Query 007523
Match_columns 600
No_of_seqs 376 out of 2512
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 11:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02443 acyl-coenzyme A oxida 100.0 1E-106 3E-111 894.3 64.0 599 1-599 1-600 (664)
2 KOG0136 Acyl-CoA oxidase [Lipi 100.0 2E-107 5E-112 846.4 50.0 587 1-598 9-607 (670)
3 PTZ00460 acyl-CoA dehydrogenas 100.0 1E-101 2E-106 854.0 60.8 576 5-599 2-586 (646)
4 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 3.1E-99 7E-104 766.6 47.2 581 5-598 19-626 (661)
5 PLN02312 acyl-CoA oxidase 100.0 5.1E-98 1E-102 827.8 58.7 566 11-598 46-647 (680)
6 PLN02636 acyl-coenzyme A oxida 100.0 7.9E-98 2E-102 828.3 58.4 573 12-599 48-652 (686)
7 cd01150 AXO Peroxisomal acyl-C 100.0 7.1E-97 2E-101 817.6 60.9 557 6-598 2-574 (610)
8 KOG0141 Isovaleryl-CoA dehydro 100.0 9.9E-63 2.2E-67 467.8 22.3 358 27-440 41-420 (421)
9 KOG0140 Medium-chain acyl-CoA 100.0 9.4E-62 2E-66 461.0 21.4 359 25-442 26-407 (408)
10 KOG0139 Short-chain acyl-CoA d 100.0 3.2E-62 7E-67 472.5 18.0 341 28-427 38-398 (398)
11 TIGR03203 pimD_small pimeloyl- 100.0 6.8E-53 1.5E-57 445.3 29.4 351 28-435 5-374 (378)
12 PRK09463 fadE acyl-CoA dehydro 100.0 2.4E-50 5.2E-55 448.8 44.1 498 13-571 63-622 (777)
13 cd01162 IBD Isobutyryl-CoA deh 100.0 9.3E-50 2E-54 422.4 31.9 353 28-439 2-374 (375)
14 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.7E-49 3.6E-54 422.0 32.5 351 27-439 13-382 (386)
15 cd01161 VLCAD Very long chain 100.0 9.3E-50 2E-54 426.8 30.5 365 18-440 20-407 (409)
16 PLN02526 acyl-coenzyme A oxida 100.0 2.7E-49 5.8E-54 422.9 32.5 365 14-440 13-399 (412)
17 KOG0137 Very-long-chain acyl-C 100.0 7.1E-49 1.5E-53 403.7 34.0 472 70-590 112-621 (634)
18 cd01160 LCAD Long chain acyl-C 100.0 2.8E-49 6.1E-54 418.6 31.9 351 29-437 1-371 (372)
19 cd01157 MCAD Medium chain acyl 100.0 5.4E-49 1.2E-53 417.2 31.2 354 28-439 2-377 (378)
20 PRK13026 acyl-CoA dehydrogenas 100.0 1.2E-47 2.7E-52 425.4 42.7 331 68-446 109-487 (774)
21 PRK03354 crotonobetainyl-CoA d 100.0 9.4E-49 2E-53 415.1 32.2 357 27-441 5-379 (380)
22 KOG0138 Glutaryl-CoA dehydroge 100.0 2.7E-49 5.8E-54 374.9 23.4 352 28-439 56-426 (432)
23 PRK12341 putative acyl-CoA deh 100.0 1.7E-48 3.8E-53 413.4 32.3 355 27-440 5-379 (381)
24 PTZ00461 isovaleryl-CoA dehydr 100.0 1E-48 2.3E-53 418.6 30.7 353 26-440 36-408 (410)
25 cd01156 IVD Isovaleryl-CoA deh 100.0 1.5E-48 3.2E-53 413.7 31.4 354 28-439 3-376 (376)
26 PLN02519 isovaleryl-CoA dehydr 100.0 2.2E-48 4.7E-53 415.3 32.3 356 28-439 27-402 (404)
27 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 4.2E-48 9.1E-53 409.3 30.6 349 28-436 2-370 (372)
28 TIGR03204 pimC_large pimeloyl- 100.0 9.7E-48 2.1E-52 408.7 30.4 357 27-438 4-393 (395)
29 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 7E-47 1.5E-51 402.8 32.7 358 31-438 3-393 (394)
30 cd01158 SCAD_SBCAD Short chain 100.0 1.4E-46 3E-51 398.2 30.8 353 29-439 1-373 (373)
31 COG1960 CaiA Acyl-CoA dehydrog 100.0 6.5E-46 1.4E-50 395.7 29.8 357 29-440 7-389 (393)
32 PLN02876 acyl-CoA dehydrogenas 100.0 1.2E-45 2.6E-50 424.9 32.3 289 105-440 525-819 (822)
33 cd00567 ACAD Acyl-CoA dehydrog 100.0 8.6E-45 1.9E-49 377.6 30.6 326 29-435 1-327 (327)
34 cd01154 AidB Proteins involved 100.0 1.8E-44 3.8E-49 386.0 31.7 328 70-438 68-417 (418)
35 PTZ00456 acyl-CoA dehydrogenas 100.0 1E-44 2.2E-49 400.0 30.0 340 70-438 102-479 (622)
36 cd01152 ACAD_fadE6_17_26 Putat 100.0 2.4E-44 5.1E-49 381.6 28.1 349 29-438 1-379 (380)
37 PRK11561 isovaleryl CoA dehydr 100.0 4.6E-44 1E-48 386.2 28.4 290 104-439 139-441 (538)
38 cd01153 ACAD_fadE5 Putative ac 100.0 4.5E-43 9.7E-48 374.8 31.6 337 70-435 39-404 (407)
39 cd01163 DszC Dibenzothiophene 100.0 1.3E-40 2.9E-45 352.8 27.6 327 70-438 25-372 (377)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 8.5E-38 1.8E-42 335.3 42.1 390 100-589 104-515 (520)
41 cd01159 NcnH Naphthocyclinone 100.0 5.4E-36 1.2E-40 316.7 24.3 325 70-439 25-370 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 2.7E-36 5.8E-41 282.5 19.3 287 108-440 91-383 (392)
43 PF01756 ACOX: Acyl-CoA oxidas 99.9 1.8E-22 4E-27 191.7 15.6 123 475-598 1-128 (187)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.9 2.9E-20 6.3E-25 199.5 24.1 248 110-405 119-391 (477)
45 PF00441 Acyl-CoA_dh_1: Acyl-C 99.8 5.6E-20 1.2E-24 168.6 17.6 145 275-438 6-150 (150)
46 PF14749 Acyl-CoA_ox_N: Acyl-c 99.5 3.2E-14 6.9E-19 126.0 10.6 115 17-131 1-125 (125)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 2.2E-13 4.8E-18 100.3 5.1 51 133-191 1-51 (52)
48 PF08028 Acyl-CoA_dh_2: Acyl-C 99.4 5.4E-12 1.2E-16 113.4 12.3 130 285-425 1-132 (134)
49 TIGR02310 HpaB-2 4-hydroxyphen 98.6 3.8E-06 8.3E-11 90.7 21.1 239 118-400 138-398 (519)
50 COG2368 Aromatic ring hydroxyl 98.5 1E-05 2.2E-10 84.5 20.1 246 112-404 125-398 (493)
51 PF02771 Acyl-CoA_dh_N: Acyl-C 98.3 4.3E-07 9.3E-12 78.7 3.9 93 28-129 1-113 (113)
52 PF11794 HpaB_N: 4-hydroxyphen 97.3 0.0014 3.1E-08 64.9 10.5 123 117-254 124-263 (264)
53 PF03241 HpaB: 4-hydroxyphenyl 86.7 9.7 0.00021 36.6 11.5 75 323-404 44-118 (205)
54 PTZ00457 acyl-CoA dehydrogenas 84.3 8.2 0.00018 42.6 11.0 71 322-404 432-502 (520)
55 KOG0137 Very-long-chain acyl-C 77.4 32 0.00069 37.8 12.0 68 322-400 536-603 (634)
56 PF02607 B12-binding_2: B12 bi 27.8 1.6E+02 0.0034 22.9 5.3 35 563-597 45-79 (79)
57 COG1902 NemA NADH:flavin oxido 22.8 47 0.001 34.9 1.6 64 383-451 154-219 (363)
58 PRK09463 fadE acyl-CoA dehydro 21.8 7E+02 0.015 29.3 10.9 98 322-439 562-662 (777)
59 PF12584 TRAPPC10: Trafficking 20.2 2.5E+02 0.0054 25.2 5.6 29 196-226 87-115 (147)
No 1
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.3e-106 Score=894.26 Aligned_cols=599 Identities=87% Similarity=1.359 Sum_probs=543.4
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcc
Q 007523 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (600)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 80 (600)
|.|+.+|++||++++||+++|+.+|+|+++..+.|+++++++++||+|...+...++++++++...+....+++.+.++|
T Consensus 1 ~~~~~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~ 80 (664)
T PLN02443 1 MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELR 80 (664)
T ss_pred CCchHHHHHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77889999999999999999999999999999999999999999999998766779999999999999889999898999
Q ss_pred cch-hhhhhhhhccCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCC
Q 007523 81 LSE-EASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 159 (600)
Q Consensus 81 ~~~-~g~~~~~~~~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~ 159 (600)
|.. +........+.+.++.+|+.+|+++|..+||+||+++|||++.+|+++||||+|||+||||+.+++|||++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~ 160 (664)
T PLN02443 81 LTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160 (664)
T ss_pred CCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCC
Confidence 876 3333344556667788999999999999999999999999999999999999999999999999999999999899
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccc
Q 007523 160 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 239 (600)
Q Consensus 160 ~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~ 239 (600)
+||||||+++|+||||+|++..||+++|+||++++++++|+++|+||+||+++|.+.|||+++++++|+|..++++.|||
T Consensus 161 efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng 240 (664)
T PLN02443 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240 (664)
T ss_pred EEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcce
Confidence 99999999999999999955899999999999888888999999999999999999999999999999993233568999
Q ss_pred eEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007523 240 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 319 (600)
Q Consensus 240 ~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~ 319 (600)
+|.|+|||||++++||++++|+++|.+..+..+.+..++.|..+|+.+++.++|++++|+++|++|+.+|+|||.+.+.+
T Consensus 241 ~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~ 320 (664)
T PLN02443 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGP 320 (664)
T ss_pred EEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCcc
Confidence 99999999999999999999999999987654434788999999999999999999999999999999999999976667
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 007523 320 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 399 (600)
Q Consensus 320 e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~G 399 (600)
|.|+++||++|+||+|+++.+++++++.+++++.+++.....+..+.....+.|..++++|++++|.+.+++++|+|+||
T Consensus 321 e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cG 400 (664)
T PLN02443 321 ETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCG 400 (664)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88999999999999999999999999999999998865544433443334568889999999999999999999999999
Q ss_pred ccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHHhhhcCCccccCCCCCH
Q 007523 400 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 479 (600)
Q Consensus 400 g~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 479 (600)
|+||+.+++++++++|++..+|+||+|+++++++|+++++.+.+..+++++.++..||.+............+..++.|+
T Consensus 401 G~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 480 (664)
T PLN02443 401 GHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQCRCGVQTAEDWLNP 480 (664)
T ss_pred CccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhhhhcccccccccccccCH
Confidence 99999999999999999999999999999999999999999988877888888889998765544333333456789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 007523 480 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYA 559 (600)
Q Consensus 480 ~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~~~~~~~~~vL~~L~~Lya 559 (600)
++++++|++|+++++..++++++++.+..++||+++++++++|+||++++++++|+++|++..++++++++|.+||+||+
T Consensus 481 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~~~~~f~~~~~~~~~~~~~~~~L~~l~~L~~ 560 (664)
T PLN02443 481 SVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKKQLQNLCYIYA 560 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999998777778899999999999999999999999999999863458899999999999999
Q ss_pred HHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007523 560 LHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 599 (600)
Q Consensus 560 L~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~~ 599 (600)
|+.|+++++||+++||+|++|++.|++.|.+||.+|||+.
T Consensus 561 l~~i~~~~~~fl~~~~ls~~~~~~i~~~i~~l~~~lrp~a 600 (664)
T PLN02443 561 LYLLHKHLGDFLSTGCITPKQASLANDQLRSLYSQVRPNA 600 (664)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 9999999999999999999999999999999999999973
No 2
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-107 Score=846.40 Aligned_cols=587 Identities=51% Similarity=0.796 Sum_probs=547.3
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCC-CCccccccHHHHHHHHHHHHHHHHHHHHHc
Q 007523 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFR-KDNRAMLSRKELFKNTLRKAAYAWKRIIEL 79 (600)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (600)
+|| ||++||.+++||+++|+.+|+|++|....|+++++.+.++|.|. ..+...+++++.++...++....++.+.++
T Consensus 9 ~Np--dl~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el 86 (670)
T KOG0136|consen 9 DNP--DLQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMREL 86 (670)
T ss_pred CCh--HHHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467 99999999999999999999999999999999999999999998 446678999999999999988889988888
Q ss_pred ccch-h-h----hhhhhhccCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEE
Q 007523 80 RLSE-E-A----SMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTAT 153 (600)
Q Consensus 80 G~~~-~-g----~~~~~~~~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~ 153 (600)
++.. . . .....+..++.|+.+|++||.++|...||+||.++||++....+++||||+||.|||+|+++++|||+
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~At 166 (670)
T KOG0136|consen 87 QDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTAT 166 (670)
T ss_pred HhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeee
Confidence 8765 1 1 12233445588899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCc
Q 007523 154 FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 233 (600)
Q Consensus 154 ~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~ 233 (600)
||+.+++||||||+.++.|||++++|+.|+|++|+|+++.+|+++|+|.|+||+||++||.+.|||+|+|+++||| +
T Consensus 167 yD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg---~ 243 (670)
T KOG0136|consen 167 YDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMG---F 243 (670)
T ss_pred ecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCcccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007523 234 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 313 (600)
Q Consensus 234 ~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg 313 (600)
+|.|||++.|+|||||++|||.++++|.++|.|+.+..++ ..|++|...|..++....-.+.+|++||+||+..|+||.
T Consensus 244 ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~ 322 (670)
T KOG0136|consen 244 NGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSE 322 (670)
T ss_pred cCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999988775 899999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHH
Q 007523 314 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 393 (600)
Q Consensus 314 ~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~ 393 (600)
..++.+|+.|+|||++|+||.|.+|..||.++++.++.++|.+..+.+..++.+.++++|++++++|+.+||.+.+.+++
T Consensus 323 i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~ 402 (670)
T KOG0136|consen 323 IRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQ 402 (670)
T ss_pred CCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHHhhhcCCcccc
Q 007523 394 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 473 (600)
Q Consensus 394 ~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 473 (600)
||+.||||||++.++++.+|-.+.+.|||||+|.||..|+||+|+|.+.+..+|+++.+++.|+........ .....
T Consensus 403 ~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~~~---~~~~~ 479 (670)
T KOG0136|consen 403 CRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALKPQ---LISGA 479 (670)
T ss_pred HHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccCcc---ccccc
Confidence 999999999999999999999999999999999999999999999999999999988789999875443211 11234
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 007523 474 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 549 (600)
Q Consensus 474 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~~~~~~~~~ 549 (600)
.++.+ + ++++|++++.+++..+.+++.+ +.+.+.+||.++++|+++|++|+++++++.|++.|.+...++.+++
T Consensus 480 ~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk~f~~kv~~~~~~~~vk~ 557 (670)
T KOG0136|consen 480 GDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVKTFLEKVEKHISDPAVKE 557 (670)
T ss_pred cchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 56666 5 9999999999999999888544 5677899999999999999999999999999999997557889999
Q ss_pred HHHHHHHHHhHHHHHhchhHHHhc-CCCCHHHHHHHHHHHHHHHHhhcCc
Q 007523 550 ILEILCHIYALHLVHKHLGDFVST-GCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 550 vL~~L~~LyaL~~I~~~~~~fl~~-~~ls~~~~~~i~~~v~~l~~~Lr~~ 598 (600)
||.+||.||+++.|.+++|+|+.. +|+|+.|++.++.++++++++||||
T Consensus 558 vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpn 607 (670)
T KOG0136|consen 558 VLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPN 607 (670)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999 9999999999999999999999997
No 3
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-101 Score=853.99 Aligned_cols=576 Identities=33% Similarity=0.549 Sum_probs=509.6
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCc-cccccHHHHHHHHHHHHHHHHHHHHHcccch
Q 007523 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDN-RAMLSRKELFKNTLRKAAYAWKRIIELRLSE 83 (600)
Q Consensus 5 ~~l~~~r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 83 (600)
.+|++||++++||+++|+.+|+|++|+.+.+.++++++.++|+|.... ..+++++++++....+...+.+.+. ...
T Consensus 2 ~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~lsr~e~~~~~~~k~~~~~~~~~---~~~ 78 (646)
T PTZ00460 2 QMLEEARKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVHPDYYNWSRQDQILLNAEKTREAHKHLN---LAN 78 (646)
T ss_pred hhHHHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccCCCcccCCHHHHHHHHHHHHHHHHHHcC---chh
Confidence 479999999999999999999999999999999999999999998763 3468999999998877777666532 111
Q ss_pred hhhhhhhhc--cCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeE
Q 007523 84 EASMLRSSV--DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEF 161 (600)
Q Consensus 84 ~g~~~~~~~--~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~ 161 (600)
.......++ ..+.++.+|+.+|+++|..+||++|+++|||++.+|++++|||+|||+||||+.+++|||++|+++|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~def 158 (646)
T PTZ00460 79 PNYYTPNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEF 158 (646)
T ss_pred hhHHhhhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEE
Confidence 111112233 445678899999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceE
Q 007523 162 VIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 241 (600)
Q Consensus 162 vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v 241 (600)
|||||+++|+||||+|+|..||+++|+||++++++++|+++|+||+||.++|.+.|||+++++++|+| +++.+||.|
T Consensus 159 vLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G---~~~~dng~l 235 (646)
T PTZ00460 159 VIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMG---YAVKDNGFL 235 (646)
T ss_pred EECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccC---cCCCCceEE
Confidence 99999999999999986789999999999988778899999999999999999999999999999999 999999999
Q ss_pred EecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 007523 242 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 321 (600)
Q Consensus 242 ~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~ 321 (600)
.|+|||||++++||++++|+++|.|..++..+ ..+..|..+|+.+++.++|++++|+++|++|+++|+|||++ +++|.
T Consensus 236 ~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~-~~~E~ 313 (646)
T PTZ00460 236 SFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTND-NKQEN 313 (646)
T ss_pred EeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-CCCCC
Confidence 99999999999999999999999877654344 78899999999999999999999999999999999999974 55699
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007523 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 401 (600)
Q Consensus 322 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~ 401 (600)
||++||++|+||+||++.+++++++++++++.+++.....+..+....++.|..++++|++++|.+.+++++|+|+|||+
T Consensus 314 pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~ 393 (646)
T PTZ00460 314 SVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGH 393 (646)
T ss_pred cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999987554433333333456789999999999999999999999999999
Q ss_pred ccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCC-CCCccccccccchhHHhhhcCCccccCCCCCHH
Q 007523 402 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYG-NMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPS 480 (600)
Q Consensus 402 Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (600)
||++++++++++||+++.+|+||+|+++++++|+.+++.+.+..++ +.+.++.+||.+.... ..++.+++
T Consensus 394 Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~ 464 (646)
T PTZ00460 394 GYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFNFLSHITEK---------LADQTTIE 464 (646)
T ss_pred cccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHhhhh---------ccccCChH
Confidence 9999999999999999999999999999999999999998776554 3445577788654211 12356678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 007523 481 AILEAFEARAIRMSVACAQNLSK----FTNQEEGFAE-LAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILC 555 (600)
Q Consensus 481 ~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~-~~~~l~~la~a~~e~~il~~F~~~v~~~~~~~~~~~vL~~L~ 555 (600)
++.++|++|+.+++..+++++.+ +.+.+++||+ ++++++++|+||++++++++|++.|++ + +++++++|.+||
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~l~~~a~ah~~~~~~~~f~~~i~~-~-~~~~~~vL~~l~ 542 (646)
T PTZ00460 465 SLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIALASAASRFIEYFNYLCFLDTINN-A-NKSTKEILTQLA 542 (646)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHHH
Confidence 89999999999998888777653 4566789999 789999999999999999999999986 4 889999999999
Q ss_pred HHHhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007523 556 HIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 599 (600)
Q Consensus 556 ~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~~ 599 (600)
.||+|+.|++++|+|+++||+|++|++.|++.+.+||.+|||+.
T Consensus 543 ~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 586 (646)
T PTZ00460 543 DLYGITMLLNNPQGLIEKGQITVEQIKLLQETREQLYPIIKPNA 586 (646)
T ss_pred HHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 99999999999999999999999999999999999999999973
No 4
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-99 Score=766.61 Aligned_cols=581 Identities=34% Similarity=0.533 Sum_probs=501.1
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-
Q 007523 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE- 83 (600)
Q Consensus 5 ~~l~~~r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~- 83 (600)
.+|..+|+.++|||++|+.+++|..+..+++.++.+.++++|.+-..+....+++++++..+. .|+.+.+.|...
T Consensus 19 ~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~----r~~~l~~~gv~~~ 94 (661)
T KOG0135|consen 19 SPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMK----RIKRLVELGVFKF 94 (661)
T ss_pred CCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHH----HHHHHHHhccCcc
Confidence 478999999999999999999983348999999999999999444445566778888876542 244455446443
Q ss_pred ---h-hhh----------hhhhccC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCC
Q 007523 84 ---E-ASM----------LRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG 147 (600)
Q Consensus 84 ---~-g~~----------~~~~~~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~ 147 (600)
+ +.. ..+..+. +.-+++|+.+|+.++..+||+.+++ |+..+.+.+++||||+||++||||+.+
T Consensus 95 ~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~ 173 (661)
T KOG0135|consen 95 WLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKG 173 (661)
T ss_pred eeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccc
Confidence 1 110 0122233 4567899999999999999998877 999999999999999999999999999
Q ss_pred CceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCc
Q 007523 148 LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 227 (600)
Q Consensus 148 ~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~ 227 (600)
|+|||||||.+++||||||+.++.|+||+|+|.+|+|++|+|++...|.++|+|.|||||||++|+...|||.|+|++.|
T Consensus 174 I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K 253 (661)
T KOG0135|consen 174 IQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHK 253 (661)
T ss_pred eeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCcccceEEecceecCccccccccccccCCCceeeccc-c--hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 228 FGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-P--RQ-LLYGTMVYVRQTIVADASCALSRAVCIAT 303 (600)
Q Consensus 228 ~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~-~--~~-~~~~~l~~~r~~~aa~~~g~~~~al~~a~ 303 (600)
.| ++|.|||.+.|+|||||++|||+++++|+++|.|+++-. + ++ ...+.+..+|+.+++.++|.++-+++||+
T Consensus 254 ~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAI 330 (661)
T KOG0135|consen 254 IG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAI 330 (661)
T ss_pred cc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhh
Confidence 99 999999999999999999999999999999999998422 1 11 46788899999999999999999999999
Q ss_pred HHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHH
Q 007523 304 RYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 383 (600)
Q Consensus 304 ~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~a 383 (600)
||+..|+|||++.+++|.||++||.+|+||.|+++.+++.+++..++...|.+...+...+.. ..++|+++|++|.++
T Consensus 331 RYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~keiHALsSg~K~~~ 408 (661)
T KOG0135|consen 331 RYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEIHALSSGLKPVA 408 (661)
T ss_pred hhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHhccchhh
Confidence 999999999998888999999999999999999999999999999999999887766543332 478999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHH
Q 007523 384 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL 463 (600)
Q Consensus 384 t~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (600)
||...+++++|+++||||||..+|+++.+..|..+.+||||||+||.||+++.||+++.. +...+|.++..|++.....
T Consensus 409 TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~-~~~e~p~~~~~~ln~~~s~ 487 (661)
T KOG0135|consen 409 TWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVS-QKKETPLSFVGFLNEYPSS 487 (661)
T ss_pred hHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHH-hhccCCchHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999987 3444566666666554443
Q ss_pred hhhcCCc-cccCCCCCHHHHHHHHHHHHHHHH-HHHHHH---HHhcCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 007523 464 MQCHCGV-QKAEDWLNPSAILEAFEARAIRMS-VACAQN---LSKFTNQEEGFAELAADLV-EAAVAHCQLIVVSKFIEK 537 (600)
Q Consensus 464 ~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~---l~~~~~~~~~~n~~~~~l~-~la~a~~e~~il~~F~~~ 537 (600)
....... .....+.++++++ ++.|..++++ +..+.+ ++.+.+.+++||.++++.. .+|.||+|..|++.|+++
T Consensus 488 ~~~~~~s~~~~d~l~~~~f~~-~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~~q~h~~~~La~a~~E~~il~~~l~h 566 (661)
T KOG0135|consen 488 PDPVLASQLVSDTLRSSQFQL-CYFWLRCHLLLETVASRERQLQSGLSSFEARNKCQVHQLRELALAFTEHTILQRFLDH 566 (661)
T ss_pred CCccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3222222 2233344567777 6666666644 444433 4456677889999887655 599999999999999999
Q ss_pred HhhcCCCCChHHHHHHHHHHHhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007523 538 LQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 538 v~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~ 598 (600)
+.+ ++++.++.||..+++||||++|++|++.|+.+||++++++..+++.+..+|.+|||+
T Consensus 567 ~~k-~~~~s~k~vL~l~~dlyal~lLek~~~ll~~~gy~s~~~a~~vr~~~l~lc~elr~~ 626 (661)
T KOG0135|consen 567 VHK-LPDPSVKAVLGLVRDLYALWLLEKHPALLYITGYVSGEFAGDVREKVLKLCAELRPV 626 (661)
T ss_pred Hhc-CCChhHHHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHHHHHHhccHH
Confidence 999 999999999999999999999999999999999999999999999999999999985
No 5
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=5.1e-98 Score=827.78 Aligned_cols=566 Identities=29% Similarity=0.466 Sum_probs=490.3
Q ss_pred hccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC---------ccccccHHHHHHHHHHHHHHHHHHHHHccc
Q 007523 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD---------NRAMLSRKELFKNTLRKAAYAWKRIIELRL 81 (600)
Q Consensus 11 r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 81 (600)
.++++||+++|+.+|+| ++.++|+++++++.++|.|... +...+++++.++.. .+.|+.+.+.|+
T Consensus 46 ~~~~sf~~~~l~~~l~g--~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~~----~~~~~~l~~~g~ 119 (680)
T PLN02312 46 NESYAFDVKEMRKLLDG--HNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREIT----MKRILYLLERGV 119 (680)
T ss_pred cccCCCCHHHHHHHhCC--ccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHhH----HHHHHHHHHhhh
Confidence 78999999999999998 5588999999999999999753 33456777777654 455777777776
Q ss_pred ch----hhh---hh--------hhhccC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCC
Q 007523 82 SE----EAS---ML--------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 144 (600)
Q Consensus 82 ~~----~g~---~~--------~~~~~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd 144 (600)
.+ +++ .. .+..+. +.++.+|+.+|+++|..+||++|+++|||++.+|++++|||+|||+||||
T Consensus 120 ~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSd 199 (680)
T PLN02312 120 FRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSN 199 (680)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcc
Confidence 54 111 01 111122 23577899999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEecc
Q 007523 145 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDI 224 (600)
Q Consensus 145 ~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~ 224 (600)
+.+++|||++|+++|+||||||+++|+||||+|++..||+++|+||++++++++|+++|+||+||.++ .+.|||+++++
T Consensus 200 v~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~-~~~PGV~ig~~ 278 (680)
T PLN02312 200 VRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDG-NICPNIRIADC 278 (680)
T ss_pred hhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCC-CCCCCEEeccC
Confidence 99999999999888999999999999999999944899999999999888788999999999999754 77999999999
Q ss_pred CCccCCCCcCCcccceEEecceecCccccccccccccCCCceeeccc---ch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 225 GMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PR-QLLYGTMVYVRQTIVADASCALSRAVC 300 (600)
Q Consensus 225 ~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~---~~-~~~~~~l~~~r~~~aa~~~g~~~~al~ 300 (600)
++|+| +++.+|++|.|||||||++|+||++++|+++|.|.++.. .. ..++..|..+|+.+++.++|++++|++
T Consensus 279 ~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~ 355 (680)
T PLN02312 279 GHKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLA 355 (680)
T ss_pred CCccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999997422 11 145688999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHH
Q 007523 301 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 380 (600)
Q Consensus 301 ~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K 380 (600)
+|++|+++|+|||.+++++|.||++||++|+||+||++.++++++.+.++.+.+++. ......+.|..++++|
T Consensus 356 iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~-------~~~~~~~~~~~as~aK 428 (680)
T PLN02312 356 IAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR-------TPESNKAIHVVSSGFK 428 (680)
T ss_pred HHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccccchhHHHHHHHH
Confidence 999999999999987777889999999999999999999999998888887766531 1111246788999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccc--ccccc
Q 007523 381 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGT--TTYMG 458 (600)
Q Consensus 381 ~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~--~~~l~ 458 (600)
++++|.+.+++++|+|+|||+||+.++++++++||+++.+|+||+|+++++++|+++++.+.+.+++++|.+. .+|+.
T Consensus 429 a~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~~~~~~ 508 (680)
T PLN02312 429 AVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYVSAKKRNKPFKGLGLEHMN 508 (680)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998887777665542 45653
Q ss_pred chhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc----CChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 459 RAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF----TNQEEGFAELAADLVEAAVAHCQLIVVSKF 534 (600)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~----~~~~~~~n~~~~~l~~la~a~~e~~il~~F 534 (600)
.... ......+..++.|+++++++|++|+++++..+++++++. .+.+.+||.+...++++|+||++++++++|
T Consensus 509 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~i~~~F 585 (680)
T PLN02312 509 GPRP---VIPTQLTSSTLRDSQFQLNLFCLRERDLLERFASEVSELQSKGESREFAFLLSYQLAEDLGRAFSERAILQTF 585 (680)
T ss_pred cccc---cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2110 000112446899999999999999999999998887643 345689999999999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007523 535 IEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 535 ~~~v~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~ 598 (600)
+++|++ +.+++++++|.+||+||+|+.|+++ ++|+++||||++|++.|++.|.+||.+|||+
T Consensus 586 ~~~i~~-~~~~~~~~vL~~L~~Lyal~~i~~~-~~fl~~~~ls~~~~~~i~~~i~~L~~~lrp~ 647 (680)
T PLN02312 586 LDAEAN-LPTGSLKDVLGLLRSLYVLISLDED-PSFLRYGYLSPDNVALVRKEVAKLCGELRPH 647 (680)
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHHhHHHHHhh-HHHHhcCCCCHHHHHHHHHHHHHHHHHHhHh
Confidence 999997 7899999999999999999999766 7999999999999999999999999999997
No 6
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=7.9e-98 Score=828.32 Aligned_cols=573 Identities=32% Similarity=0.509 Sum_probs=488.8
Q ss_pred ccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-h---h--
Q 007523 12 KKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-E---A-- 85 (600)
Q Consensus 12 ~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~---g-- 85 (600)
++++||+++|+.++++ ++.++++++++|+.++|.|..+.. .+.++..+.. ..++++.+.++|+.+ . .
T Consensus 48 ~~~~f~~~~l~~~l~~--~~~~~r~~v~~~~~~~~~~~~~~~--~~~~~~~e~~---~~~l~~~~~~~g~~~~~~~~~~~ 120 (686)
T PLN02636 48 IKLSVNTEKLSLYMRG--KHRDIQEKIYEFFNSRPDLQTPVE--ISKDEHRELC---MRQLTGLVREAGIRPMKYLVEDP 120 (686)
T ss_pred ccCCCCHHHHHhhcCC--cHHHHHHHHHHHHHhCccccCCch--hhHHHhhhhH---HHHHHHHHHhcCccccccccCCH
Confidence 5799999999999986 467899999999999998854321 2222222211 156778888999854 1 1
Q ss_pred hhh------hhhccC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCC
Q 007523 86 SML------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 157 (600)
Q Consensus 86 ~~~------~~~~~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~ 157 (600)
... .+..+. +.++++|+.+|+++|..+||+||+++|||++.+|++++|||+|||+||||+++++|||++|++
T Consensus 121 ~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~ 200 (686)
T PLN02636 121 AKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPL 200 (686)
T ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCC
Confidence 100 111122 345789999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEecCCCCccccccCCCCCCccEEEEEEEEecC------CCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCC
Q 007523 158 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD------GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 231 (600)
Q Consensus 158 ~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~------~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~ 231 (600)
+|+||||||+++|+||||+|++..||+++|+||++.+ ++++|+++||||+||.++|.+.|||+++++++|+|
T Consensus 201 ~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G-- 278 (686)
T PLN02636 201 TDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVG-- 278 (686)
T ss_pred CCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccC--
Confidence 8999999999999999999944569999999999743 24689999999999999999999999999999999
Q ss_pred CcCCcccceEEecceecCccccccccccccCCCceeec--ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007523 232 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQS--NVPR--QLLYGTMVYVRQTIVADASCALSRAVCIATRYSA 307 (600)
Q Consensus 232 ~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~--~~~~--~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~ 307 (600)
+++.+||.|.|||||||++||||++++|+++|.|.++ ...+ ..++..|..+|+.+++.++|++++|+++|++|+.
T Consensus 279 -~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~ 357 (686)
T PLN02636 279 -LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSL 357 (686)
T ss_pred -CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999873 1111 2678899999999999999999999999999999
Q ss_pred hccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHH
Q 007523 308 VRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTAT 387 (600)
Q Consensus 308 ~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a 387 (600)
+|+|||+ ++++|.||++||.+|++|+||++.+++++++.+.+...+..... .++.....+.|..++++|++++|.+
T Consensus 358 ~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~as~aK~~~t~~a 433 (686)
T PLN02636 358 LRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKK---THDDQLVADVHALSAGLKAYITSYT 433 (686)
T ss_pred cCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999998 45678899999999999999999999998877777665543321 2232233568999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHH-hhh
Q 007523 388 ADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL-MQC 466 (600)
Q Consensus 388 ~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 466 (600)
.+++++|+|+|||+||+.++++++++||+++.+|+||+|+++++++|+++++.+.+..++..+.++..||.+.... ...
T Consensus 434 ~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 513 (686)
T PLN02636 434 AKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLSVTWNYLRESMNTYLSQ 513 (686)
T ss_pred HHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999987766666666678888654321 111
Q ss_pred cCC----ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007523 467 HCG----VQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF---TNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQ 539 (600)
Q Consensus 467 ~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~---~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~ 539 (600)
+.. ..+..++.|+++++++|++|+.+++..++.++++. ...+++||+++++++++|+||++++++++|++.|+
T Consensus 514 ~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~awn~~~~~l~~~a~ah~~~~~~~~f~~~v~ 593 (686)
T PLN02636 514 PNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVE 593 (686)
T ss_pred cccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 12345699999999999999999999998888642 34578999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007523 540 QDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 599 (600)
Q Consensus 540 ~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~~ 599 (600)
+ +++++++++|.+||+||+|+.|++++|||+++||+|++|++.|++.+.+||.+|||+.
T Consensus 594 ~-~~~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 652 (686)
T PLN02636 594 R-CPDRSTRAALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNVA 652 (686)
T ss_pred h-cCCHHHHHHHHHHHHHHhHHHHHHhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 7 7899999999999999999999999999999999999999999999999999999973
No 7
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=7.1e-97 Score=817.60 Aligned_cols=557 Identities=43% Similarity=0.698 Sum_probs=495.8
Q ss_pred chHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC-ccccccHHHHHHHHHHHHHHHHHHHHHcccch-
Q 007523 6 QLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD-NRAMLSRKELFKNTLRKAAYAWKRIIELRLSE- 83 (600)
Q Consensus 6 ~l~~~r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~- 83 (600)
+|++||++++||+++|+.+|+|+++..+.++++.+++.++|.|... .....+|++.+++..+...+....+.++++..
T Consensus 2 ~l~~eR~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (610)
T cd01150 2 DLDKERASATFDWKALTHILEGGEENLRRKREVERELESDPLFQRELPSKHLSREELYEELKRKAKTDVERMGELMADDP 81 (610)
T ss_pred hhHHhhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 7999999999999999999999898899999999999999999875 23457888888777777667777777777743
Q ss_pred -hhhhh---hhhccC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCC
Q 007523 84 -EASML---RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 157 (600)
Q Consensus 84 -~g~~~---~~~~~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~ 157 (600)
+.... ....+. +.++++|+++|+++|..+||+||+++|||++.+|+++||||+|||+||||+.+++|||++|++
T Consensus 82 ~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~ 161 (610)
T cd01150 82 EKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPL 161 (610)
T ss_pred HHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCC
Confidence 21111 111222 346789999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcc
Q 007523 158 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD 237 (600)
Q Consensus 158 ~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~ 237 (600)
+++||||||+++|+||||+|++..|++++|+||+..+++++|+++|+||+||.++|.+.|||+++++++|+| +++.+
T Consensus 162 t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G---~~g~d 238 (610)
T cd01150 162 TQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMG---LNGVD 238 (610)
T ss_pred CCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccC---CCCCC
Confidence 799999999999999999995567999999999987778899999999999999999999999999999999 99999
Q ss_pred cceEEecceecCccccccccccccCCCceeeccc-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007523 238 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-PR---QLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 313 (600)
Q Consensus 238 ~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~-~~---~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg 313 (600)
||.|.|+|||||++++|+++++|+++|.|..+.. +. ..+...+..+|+.+++.++|++++|+++|++|++.|+|||
T Consensus 239 ng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg 318 (610)
T cd01150 239 NGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFG 318 (610)
T ss_pred eEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecC
Confidence 9999999999999999999999999999988544 22 1456677889999999999999999999999999999999
Q ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHH
Q 007523 314 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 393 (600)
Q Consensus 314 ~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~ 393 (600)
++++++|.||++||++|+||+|+++.+++++.+..++...+.......+.++....++.|..++++|++++|.+.+++++
T Consensus 319 ~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~ 398 (610)
T cd01150 319 PKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQE 398 (610)
T ss_pred CCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98788899999999999999999999999999888887776655444443443444678999999999999999999999
Q ss_pred HHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHHhhhcCCcccc
Q 007523 394 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 473 (600)
Q Consensus 394 ~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 473 (600)
|+|+|||+||+.+++++++++|+++.+|+||+|+++++++++++++.+.+.++
T Consensus 399 ~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~--------------------------- 451 (610)
T cd01150 399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS--------------------------- 451 (610)
T ss_pred HHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC---------------------------
Confidence 99999999999999999999999999999999999999999999987654211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 007523 474 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 549 (600)
Q Consensus 474 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~~~~~~~~~ 549 (600)
+++++++|++|+.+++..+++++.+ +.+..++||+++++++++|+||+++++++.|++.|++ +++++++.
T Consensus 452 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~~~a~Ah~~~~~~~~f~~~~~~-~~~~~~~~ 525 (610)
T cd01150 452 -----LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLRCAAKAHTEYTVLQRFHESVEE-IVDPSVRA 525 (610)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHH
Confidence 4567889999999999888877653 3466789999999999999999999999999999997 78999999
Q ss_pred HHHHHHHHHhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007523 550 ILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 550 vL~~L~~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~ 598 (600)
||.+||.||+|+.|+++++||++++|+|++|++.|++.+.+||.+|||+
T Consensus 526 vL~~L~~Ly~l~~i~~~~g~fl~~~~ls~~~~~~~~~~~~~l~~~lrp~ 574 (610)
T cd01150 526 VLKRLCDLYALWLLEEHIADFLEGGFLGGQDVKAVREALLALLPQLRPD 574 (610)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997
No 8
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=9.9e-63 Score=467.84 Aligned_cols=358 Identities=21% Similarity=0.280 Sum_probs=312.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h--hhhhhhhcc-------
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E--ASMLRSSVD------- 93 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~--g~~~~~~~~------- 93 (600)
-++||..||++++.|+.++-.... .+++....|+ ..+++|+.+.++|+++ + ||.+.++++
T Consensus 41 ~~~e~~~~r~sv~kF~qeelaP~a---~eidk~n~~~----~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE 113 (421)
T KOG0141|consen 41 LSDEQDQLRESVRKFFQEELAPHA---SEIDKANEFK----DLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEE 113 (421)
T ss_pred CCHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCcc----hHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHH
Confidence 468999999999999988543221 2333333343 2477999999999988 1 444433221
Q ss_pred -------CcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 94 -------EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 94 -------~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
....++.|.+++..-|.+.||+||+++|||++.+|+.+|++|||||++|||+.++++.|+++ |+.||||
T Consensus 114 ~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~--g~~yiLN-- 189 (421)
T KOG0141|consen 114 ISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKK--GDDYILN-- 189 (421)
T ss_pred HHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceec--CCcEEec--
Confidence 14468899999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecC--CCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEec
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 244 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~--~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~ 244 (600)
|+|+||+| ++.||.+||+|.++.. ...+|+++|||. ..+||++..+.-+|+| |+|++++++.|+
T Consensus 190 ---GsK~witN-G~~advliVyAkTd~~a~~~~hGIt~FiVE-------kgm~GFs~~~KLdKlG---mrgsdTcELvFe 255 (421)
T KOG0141|consen 190 ---GSKFWITN-GPDADVLIVYAKTDHSAVPPSHGITAFIVE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFE 255 (421)
T ss_pred ---CcEEEEec-CCCCcEEEEEEecCCCCCCCcCceEEEEEc-------CCCcccccchhhHhhc---CCCCcchheehh
Confidence 99999999 9999999999999876 456999999999 8999999999999999 999999999999
Q ss_pred ceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcccc
Q 007523 245 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 324 (600)
Q Consensus 245 ~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~ 324 (600)
|++||++|+||. +++++- +++..+...|+.+++..+|.++.+++.+..|+++|++||+ +|+
T Consensus 256 d~~vpas~ilg~------enkGvY------vlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk-------~ig 316 (421)
T KOG0141|consen 256 DCKVPASNILGE------ENKGVY------VLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGK-------KIG 316 (421)
T ss_pred hccCcHHHhcCc------CCceEE------EEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCC-------chh
Confidence 999999999995 444443 4556777899999999999999999999999999999999 999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 007523 325 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 404 (600)
Q Consensus 325 ~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~ 404 (600)
+||.+|+++|+|...+.+.|+.++.++..-|. +.. ....+++++.|+++.+.+++-+|+|++||.||.
T Consensus 317 ~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~-------g~~-----~~kdcag~il~aaE~~tqVald~iQ~~GGnGYi 384 (421)
T KOG0141|consen 317 HFQLLQGKLADMYTTLCASRSYVYNVARACDA-------GNV-----DPKDCAGVILYAAEKATQVALDAIQCLGGNGYI 384 (421)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-------CCC-----ChhhhhhhhhhHhhhhHHHHHHHHhhccCcccc
Confidence 99999999999999999999999988766542 221 133488999999999999999999999999999
Q ss_pred cCCChhhhhcccccccccccchHHHHHHHHHHHHHH
Q 007523 405 CSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 405 ~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
+|+|+++++||++.+.|+.|++++.+..|+|.+.+.
T Consensus 385 neyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 385 NEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred cccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999998653
No 9
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.4e-62 Score=461.00 Aligned_cols=359 Identities=22% Similarity=0.302 Sum_probs=312.9
Q ss_pred HcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h--hhhhhhhccC----
Q 007523 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E--ASMLRSSVDE---- 94 (600)
Q Consensus 25 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~--g~~~~~~~~~---- 94 (600)
+..+++|.++++.+++|..+.-+ +. ..+++....+ ..++.+...++|+.. + ||.+.+.++.
T Consensus 26 f~L~e~qke~q~~A~kFa~~e~~-P~--aae~Dk~ge~------P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~ 96 (408)
T KOG0140|consen 26 FGLTEDQKEFQEAARKFAKDEMI-PN--AAEYDKSGEF------PWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIF 96 (408)
T ss_pred cCcchHHHHHHHHHHHHHHHhhc-cc--hhhhcccCCC------cHHHHHHHHHcccCcccCccccCCCCchhHHHHHHH
Confidence 45568999999999999876422 11 1122322333 345566667888876 1 5554432221
Q ss_pred ----------cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEe
Q 007523 95 ----------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 164 (600)
Q Consensus 95 ----------~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLn 164 (600)
...+..| +|+.+.|..+|++|||++||++++....+++||+||||+|||+.++.|+|++. ||+||||
T Consensus 97 E~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYiiN 173 (408)
T KOG0140|consen 97 EALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN 173 (408)
T ss_pred HHHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEEc
Confidence 2234556 48999999999999999999999999999999999999999999999999977 9999999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEEecCC---CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceE
Q 007523 165 SPTLTSSKWWPGGLGKVSTHAVVYARLITDG---QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 241 (600)
Q Consensus 165 tp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~---~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v 241 (600)
|+|.||+| +.+|+|++|+||+++++ ..+++++|+|+ .++||++.+....+|| .|.+|+-.|
T Consensus 174 -----GsKawItg-~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe-------~dTpGlt~GkKE~nmG---qr~sdTR~i 237 (408)
T KOG0140|consen 174 -----GSKAWITG-AGHANWYFVLARTDPDPKTPAGKAFTAFIVE-------GDTPGLTRGKKEKNMG---QRCSDTRGI 237 (408)
T ss_pred -----Cceeeeec-CCccceEEEEEecCCCCCCCCCcceEEEEEe-------CCCCCcCcChhhhccc---ccCCCCcee
Confidence 99999999 99999999999999873 45789999999 8999999999999999 999999999
Q ss_pred EecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 007523 242 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 321 (600)
Q Consensus 242 ~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~ 321 (600)
.|+||+||.+|+||. +|.++. +.++.++.+|..+++.++|.++++++.+++|+.+|+|||.
T Consensus 238 tFEDvrVP~~Nvlg~------~G~GFk------vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~------- 298 (408)
T KOG0140|consen 238 TFEDVRVPKENVLGA------PGAGFK------VAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGT------- 298 (408)
T ss_pred eeeecccchhccccC------CCccce------ehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCc-------
Confidence 999999999999995 888887 7889999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007523 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 401 (600)
Q Consensus 322 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~ 401 (600)
||+++|.+|..||+|...++.+|.+.+.+++.+|+ ++ ++ ...+|++|.++++.|..++..++|++||.
T Consensus 299 ~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~-------~r----~~-sy~aSiAK~fA~D~an~~at~AvQifGG~ 366 (408)
T KOG0140|consen 299 PIANHQAVQFMLADMAINLELARLMTRNAAWEVDN-------GR----RN-SYYASIAKLFATDTANQAATNAVQIFGGN 366 (408)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----cc-hHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999887752 11 23 66799999999999999999999999999
Q ss_pred ccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHH
Q 007523 402 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 442 (600)
Q Consensus 402 Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~ 442 (600)
||..|+|+++++||+++++||||+|++++..|+|.||..+.
T Consensus 367 Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 367 GFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred CccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998753
No 10
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-62 Score=472.55 Aligned_cols=341 Identities=23% Similarity=0.307 Sum_probs=300.5
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-h-----hhhhhhhc---------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-E-----ASMLRSSV--------- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~-----g~~~~~~~--------- 92 (600)
+|++.++.+++++|..+. +.+. ...++++..+ ...+.+.+.|+|+.+ + ||.+..++
T Consensus 38 ~E~e~~l~~tvrkfa~~~-i~Pl--v~~mD~~~~~------~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEi 108 (398)
T KOG0139|consen 38 SETEQMLQKTVRKFAQEE-IKPL--VREMDRESRY------PASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEI 108 (398)
T ss_pred CcHHHHHHHHHHHHHHHh-cchH--HHhhhhhccC------CHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHH
Confidence 477889999999988763 2111 1234444333 356788899999998 2 55543322
Q ss_pred ---cC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ---DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ---~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+. ++.+.+|+.|..++|..+||+|||++|+|.+ .|+.++|||++||+.|||+..+.|+|++| ||.|+||
T Consensus 109 sk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN--- 182 (398)
T KOG0139|consen 109 SKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN--- 182 (398)
T ss_pred hccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe---
Confidence 11 4556789999999999999999999888876 67889999999999999999999999998 8999999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+||+| +..|++++|+|.+++..+.+|+++|+|| ++.||++++...+|+| +|+++++.+.|+|||
T Consensus 183 --GsKmWItN-~~~A~~~lVfan~d~~~~~Kgit~fiV~-------rd~~Gl~~~k~eDKLG---mRaSsTcql~fedVr 249 (398)
T KOG0139|consen 183 --GSKMWITN-AGEADWFLVFANADPSKGYKGITCFIVP-------RDTPGLSLGKKEDKLG---MRASSTCQLHFEDVR 249 (398)
T ss_pred --cceeeecC-CcccceEEEEEecChhhccCceeEEEee-------CCCCCcccCCcccccc---ccccceeeEEecccc
Confidence 99999999 9999999999999887788999999999 8999999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++||. .|.+.. .....|+.+|+.++|+++|.++.+++.++.|+++|.|||+ +|.++|
T Consensus 250 Vpks~IlGe------~G~Gyk------yAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk-------~l~d~Q 310 (398)
T KOG0139|consen 250 VPKSSILGE------YGKGYK------YAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGK-------RLLDFQ 310 (398)
T ss_pred ccchhhccc------CCcchH------HHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcc-------hhhhHH
Confidence 999999995 677776 7788899999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+||+||++.++++++|+++|+++++-+. + .+...+++|+|.++++.|..++..|+|+.||.||+.++
T Consensus 311 ~iQhqiA~~~teiEaaRlL~ynaAr~k~~-------G-----~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~ 378 (398)
T KOG0139|consen 311 GLQHQIADMATEIEAARLLVYNAARMKDQ-------G-----LPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDF 378 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------C-----CchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999887652 1 23566799999999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchH
Q 007523 408 GLPELFAVYVPACTYEGDNI 427 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~ 427 (600)
+.+++|||++...||||+++
T Consensus 379 paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 379 PAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred cHHHHhhhceeeeeecCCCC
Confidence 99999999999999999864
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=6.8e-53 Score=445.33 Aligned_cols=351 Identities=18% Similarity=0.165 Sum_probs=291.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h--hhhhhhhcc--------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E--ASMLRSSVD-------- 93 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~--g~~~~~~~~-------- 93 (600)
++||.++++++++|+.++..... .+...+....+..++|+.+.++||.+ + ||.+.++.+
T Consensus 5 ~~eq~~l~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel 77 (378)
T TIGR03203 5 SEEQRLLKESVEGLLKTSYDFDS-------RKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEAL 77 (378)
T ss_pred CHHHHHHHHHHHHHHHhhCCHHH-------HHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHH
Confidence 57899999999999987532110 11111222234467899999999988 2 444322211
Q ss_pred ----CcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 007523 94 ----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 169 (600)
Q Consensus 94 ----~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~ 169 (600)
.+.++..+..++...|..+|+++||++|||++++|+.++++++|||++|||+.+++|+|+++ +|+|+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~----- 150 (378)
T TIGR03203 78 GKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID----- 150 (378)
T ss_pred hCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEc--CCEEEEE-----
Confidence 12333333335556788999999999999999999999999999999999999999999987 7899999
Q ss_pred ccccccCCCCCCccEEEEEEEEecCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceec
Q 007523 170 SSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 248 (600)
Q Consensus 170 G~K~~v~~~a~~A~~~vV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 248 (600)
|+|+||++ +..||+++|+|+++++. +..|+++|+|| .+.|||++.+.+.++| . .++.|.|+||+|
T Consensus 151 G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~g---~---~~~~l~fd~v~v 216 (378)
T TIGR03203 151 GEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVP-------AGAKGVTIKGYPTQDG---L---HAADITFTGVVV 216 (378)
T ss_pred eEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEE-------CCCCCceeccccccCC---C---ceeeEEECCCcc
Confidence 99999999 99999999999975432 34689999999 7789999988777666 5 358899999999
Q ss_pred CccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHH
Q 007523 249 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~ 328 (600)
|.+++||. .|.++. .+...+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 217 p~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~-------pi~~~Q~ 277 (378)
T TIGR03203 217 GADAAIGD------PENALP------LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV-------PIGSFQV 277 (378)
T ss_pred cHHhhcCC------cchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc-------cchhhHH
Confidence 99999984 454443 5667888999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007523 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 408 (600)
+||+|++|.+.+++++++++.+++..+. +. ..+....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 278 vq~~lAdm~~~~e~ar~l~~~aa~~~~~--------~~--~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~ 347 (378)
T TIGR03203 278 LQHRAADMFVAVEQARSMAMFATMASDF--------DD--AKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAK 347 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccch
Confidence 9999999999999999999998776531 10 0123456889999999999999999999999999999999
Q ss_pred hhhhhcccccccccccchHHHHHHHHH
Q 007523 409 LPELFAVYVPACTYEGDNIVLLLQVAR 435 (600)
Q Consensus 409 l~~~~rd~~~~~~~~G~~~vl~~~ia~ 435 (600)
++++|||++...+++|++++++.+++.
T Consensus 348 ~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 348 IGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999998887
No 12
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-50 Score=448.76 Aligned_cols=498 Identities=16% Similarity=0.142 Sum_probs=347.9
Q ss_pred cCCCCHHHHHHHHc--CChhhHHHHHH-HHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h
Q 007523 13 KAQFDVDEMKIVWA--GSRHAFQVSDR-IARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E 84 (600)
Q Consensus 13 ~~~f~~~~l~~~~~--~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~ 84 (600)
.-.+|++.+-.+=+ -++|++++++. +++++..-. .++..+ ....+..++|+.+++.||.+ +
T Consensus 63 ~G~~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~~~~--------~~~~~~---~~~~~P~e~w~~L~e~G~~gl~IPee 131 (777)
T PRK09463 63 SGKPDWKKLLNYPKPTLTAEEQAFLDGPVEELCRMVN--------DWQITH---ELADLPPEVWQFIKEHGFFGMIIPKE 131 (777)
T ss_pred CCCCChHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHhc---cccCCCHHHHHHHHHCCCCcCCCchh
Confidence 34556666522112 25678888886 666654210 011000 00123357899999999997 2
Q ss_pred -hhhhhhhc------------cCc--chhhhhhhhhH-HHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCC
Q 007523 85 -ASMLRSSV------------DEP--AFTDLHWGMFV-PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGL 148 (600)
Q Consensus 85 -g~~~~~~~------------~~~--~~~~~h~~l~~-~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~ 148 (600)
||.+.+.. +.+ ..+.+|..++. ..|..+||+|||++|||++++|+.++||++|||++|||+.++
T Consensus 132 yGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i 211 (777)
T PRK09463 132 YGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSI 211 (777)
T ss_pred hCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccc
Confidence 44332111 111 12345655553 478899999999999999999999999999999999999999
Q ss_pred ceEEEE---eCCCC---eEEEecCCCCccccccCCCCCCccEEEEEEEE-ecC-----CCCCceEEEEEeeccCCCCCCC
Q 007523 149 ETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD-----GQDHGVNGFIVQLRSLEDHSPL 216 (600)
Q Consensus 149 ~TtA~~---d~~~~---~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~-~~~-----~~~~g~~~flV~~rd~~~~~~~ 216 (600)
+|+++. +.+|+ +|+|| |+|.|||+ ++.||+++|++++ +++ +++.|+++|||| .+.
T Consensus 212 ~Tta~~~~a~~dGd~~~g~vLN-----G~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp-------~d~ 278 (777)
T PRK09463 212 PDTGVVCKGEWQGEEVLGMRLT-----WNKRYITL-APIATVLGLAFKLYDPDGLLGDKEDLGITCALIP-------TDT 278 (777)
T ss_pred cccceeeeeeecCCcccceEEE-----EEEEeeCC-CCccCEEEEEEEecCcccccCCCCCCceEEEEEE-------CCC
Confidence 876542 12255 59999 99999999 9999999999986 322 235789999999 788
Q ss_pred CCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHH-HHHHHHHHHHH
Q 007523 217 PGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVADASCAL 295 (600)
Q Consensus 217 pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r-~~~aa~~~g~~ 295 (600)
|||++++.+.++| ++ ..++.+.|+||+||.+++||.. ...|.++. .+...+..+| +.+++.++|++
T Consensus 279 pGV~ig~~~~~lG---~r-~~~g~v~fddV~VP~d~lLG~~---~~~G~G~~------~l~~~L~~gR~i~laA~avG~a 345 (777)
T PRK09463 279 PGVEIGRRHFPLN---VP-FQNGPTRGKDVFIPLDYIIGGP---KMAGQGWR------MLMECLSVGRGISLPSNSTGGA 345 (777)
T ss_pred CCeEecccccccC---cc-cccceEEeeeeecCHHHhcccc---cccChHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 87 5689999999999999999841 01255554 6778899999 89999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHH
Q 007523 296 SRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHAC 375 (600)
Q Consensus 296 ~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (600)
+++++.+++|+++|+|||+ ||++||.+|++|++|.+.+++++++.+.+++.++. ++ .....
T Consensus 346 r~al~~Av~YA~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~-------G~-----~~~~~ 406 (777)
T PRK09463 346 KLAALATGAYARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDL-------GE-----KPSVL 406 (777)
T ss_pred HHHHHHHHHHHHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHH
Confidence 9999999999999999999 99999999999999999999888888777655531 11 12456
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcccccccC--CChhhhhcccccccccccchHHHHHHH-----H----HHHHHHHHHh
Q 007523 376 TAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQV-----A----RFLMKTVSQL 444 (600)
Q Consensus 376 ~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~--~~l~~~~rd~~~~~~~~G~~~vl~~~i-----a----~~ll~~~~~~ 444 (600)
++++|+++++.+.+++++|+|+|||+||+.+ ++++++|||++...|+||+|++++..+ + -++++.+..+
T Consensus 407 aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~iifgqga~r~hp~~~~~~~~~ 486 (777)
T PRK09463 407 SAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLMIFGQGAIRCHPYVLKEMEAA 486 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHHHcCCcchhcCHHHHHHHHHH
Confidence 8899999999999999999999999999997 899999999999999999999999886 0 1233333322
Q ss_pred cCC---------CCCccccccccc-h-hHHh-hhcCCccccCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Q 007523 445 GYG---------NMPVGTTTYMGR-A-EQLM-QCHCGVQKAEDWLNPS--AILEAFEARAIRMSVACAQNLSKFTNQEEG 510 (600)
Q Consensus 445 ~~~---------~~~~~~~~~l~~-~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 510 (600)
... ++|.+...|+-. . ..+. ......... ...++. -..+.+++.+..+...+---|. ..+..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~a~~~d~~l~---~~g~~ 562 (777)
T PRK09463 487 QNNDKQALKAFDKALFGHIGFVVSNAVRSFWLGLTGGRLSA-APVDDATKRYYRQLNRLSANLALLADVSML---VLGGS 562 (777)
T ss_pred hcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHH---HHhHH
Confidence 111 122222222211 0 0000 000000000 112332 1111122222221111111111 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhchhHHH
Q 007523 511 FAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFV 571 (600)
Q Consensus 511 ~n~~~~~l~~la~a~~e~~il~~F~~~v~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl 571 (600)
....+..+.+++.+.+++|++.+-+.+.+. ...+.-...|...+.-++++.+++....++
T Consensus 563 l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 622 (777)
T PRK09463 563 LKRRERLSARLGDILSQLYLASAVLKRYED-EGRPEADLPLVHWAVQDALYQAEQALDGLL 622 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667788999999999999998888875 223333356888888899999999775543
No 13
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=9.3e-50 Score=422.41 Aligned_cols=353 Identities=24% Similarity=0.303 Sum_probs=296.6
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh----------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS---------- 91 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~---------- 91 (600)
+|+|.++++.+++|+.++..... ..++...++..++|+.+.+.||.+ + ||.+...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 72 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHA---------ADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEAL 72 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch---------hhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHH
Confidence 47888999999999977422111 011112223467899999999987 2 4432211
Q ss_pred --ccCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 92 --VDEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 92 --~~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
.+.+. .+.+|. +++..+..+|+++|+++|+|++.+|+.++++++|||++|||+..++|+|+++ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~--- 146 (375)
T cd01162 73 STGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN--- 146 (375)
T ss_pred HhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE---
Confidence 11122 234553 5667788899999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+||+| +..||+++|+|++..+ ...++++|+|| .+.|||++.+.|+++| +++++++.|.|+||+
T Consensus 147 --G~k~~vs~-~~~ad~~~v~a~~~~~-~~~~~~~~lv~-------~~~~gv~v~~~~~~~g---~~~~~~~~l~f~~v~ 212 (375)
T cd01162 147 --GSKAFISG-AGDSDVYVVMARTGGE-GPKGISCFVVE-------KGTPGLSFGANEKKMG---WNAQPTRAVIFEDCR 212 (375)
T ss_pred --EEEEEecC-CCCCCEEEEEEEecCC-CCCceEEEEEe-------CCCCCeecCCcccccC---CCCCCeeEEEECceE
Confidence 99999999 8999999999997543 23578899999 7789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++|+. +|.+.. .....+..+|+.+++.++|+++++++.+++|+++|+|||. ||++||
T Consensus 213 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-------~l~~~~ 273 (375)
T cd01162 213 VPVENRLGG------EGQGFG------IAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGK-------PLADFQ 273 (375)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhH
Confidence 999999984 555443 4455677889999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++.+++.+++.+++ +. ++....++++|+++++.+.++++.++|+|||+||+.++
T Consensus 274 ~vq~~la~~~~~l~~a~~~~~~a~~~~~~-------~~----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~ 342 (375)
T cd01162 274 ALQFKLADMATELVASRLMVRRAASALDR-------GD----PDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDY 342 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 99999999999999999999998877652 11 12344678899999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
++++++||++...+++|++++++.++++.+++
T Consensus 343 ~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 343 PVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred hHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998864
No 14
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.7e-49 Score=421.96 Aligned_cols=351 Identities=22% Similarity=0.256 Sum_probs=294.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h-hhhhhhhc---------
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E-ASMLRSSV--------- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~-g~~~~~~~--------- 92 (600)
-++||.++++.+++|+.+...-.. ........+..++|+.+.+.||.+ + ||.+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l 83 (386)
T cd01151 13 LTEEERAIRDTAREFCQEELAPRV---------LEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREV 83 (386)
T ss_pred CCHHHHHHHHHHHHHHHHhcCccH---------HHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHH
Confidence 358899999999999987421100 011111123467899999999875 2 44322111
Q ss_pred ---cCc--chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ---DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ---~~~--~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+ .++.+|..++..+|..+|+++|+++|+|++++|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 158 (386)
T cd01151 84 ERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN--- 158 (386)
T ss_pred HhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE---
Confidence 112 234566656667788999999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+|+++ +..||+++|+|+++.+ .++++|+|| ...|||++.+.|+++| +++++++.+.|+||+
T Consensus 159 --G~K~~is~-~~~Ad~~lv~ar~~~~---~~~~~flVp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~f~~v~ 222 (386)
T cd01151 159 --GSKTWITN-SPIADVFVVWARNDET---GKIRGFILE-------RGMKGLSAPKIQGKFS---LRASITGEIVMDNVF 222 (386)
T ss_pred --EEEEeecC-CCcCCEEEEEEEECCC---CcEEEEEEc-------CCCCCeecCCCCCCcC---CCCCceeEEEEccEE
Confidence 99999999 8999999999997542 468899999 6789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++++. +.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|
T Consensus 223 Vp~~~~l~~-------~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q 282 (386)
T cd01151 223 VPEENLLPG-------AEGLR------GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGR-------PLAAFQ 282 (386)
T ss_pred eCHHHcCCc-------cccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC-------chhhhH
Confidence 999999973 22222 3456777889999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++.+++++++.+++ .. .....++++|.++++.+.++++.++|+|||+||+.++
T Consensus 283 ~vq~~la~~~~~~eaar~l~~~a~~~~d~-------~~-----~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 350 (386)
T cd01151 283 LVQKKLADMLTEIALGLLACLRVGRLKDQ-------GK-----ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEY 350 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC
Confidence 99999999999999999999998876652 11 1233578899999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++++|||++...+++|++++++..+++.+++
T Consensus 351 ~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 351 HIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999875
No 15
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=9.3e-50 Score=426.75 Aligned_cols=365 Identities=21% Similarity=0.251 Sum_probs=303.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh
Q 007523 18 VDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS 91 (600)
Q Consensus 18 ~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~ 91 (600)
|+-|+. +-+++|.++++.+++|+++...... .++.. .+..++|+.+.+.||.+ + ||.+...
T Consensus 20 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~-----~d~~~------~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~ 86 (409)
T cd01161 20 PSVLTE--EQTEELNMLVGPVEKFFEEVNDPAK-----NDQLE------KIPRKTLTQLKELGLFGLQVPEEYGGLGLNN 86 (409)
T ss_pred ccccCc--cCCHHHHHHHHHHHHHHHHhCCchh-----hcccc------CCCHHHHHHHHhCCCCCCCCChhhCCCCCCH
Confidence 344444 3357899999999999987532111 11111 23357899999999987 1 4432211
Q ss_pred c-----------cCc--chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCC
Q 007523 92 V-----------DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQT 158 (600)
Q Consensus 92 ~-----------~~~--~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~ 158 (600)
. +.+ ..+.+|..+....+..+|+++|+++|+|++++|+.++|+++|||++|||+..++|+|++++++
T Consensus 87 ~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g 166 (409)
T cd01161 87 TQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDG 166 (409)
T ss_pred HHHHHHHHHHhhChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCC
Confidence 1 111 224566655555678899999999999999999999999999999999999999999997667
Q ss_pred CeEEEecCCCCccccccCCCCCCccEEEEEEEEec---CCC-CCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcC
Q 007523 159 DEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT---DGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 234 (600)
Q Consensus 159 ~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~---~~~-~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~ 234 (600)
++|+|| |+|+|++| +..||+++|.|++.. ++. ..++++|+|| .+.|||++.+.|+++| ++
T Consensus 167 ~g~~l~-----G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp-------~~~~gv~~~~~~~~~G---~~ 230 (409)
T cd01161 167 KHYVLN-----GSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFIVE-------RSFGGVTNGPPEKKMG---IK 230 (409)
T ss_pred CEEEEE-----eEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEEEe-------CCCCCcccCCcccccC---CC
Confidence 899999 99999999 899999999999752 221 3578899999 6789999999999999 99
Q ss_pred CcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007523 235 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGS 314 (600)
Q Consensus 235 ~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~ 314 (600)
+++++.|.|+||+||++++|+. .|.+.. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 231 g~~s~~v~~~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~ 298 (409)
T cd01161 231 GSNTAEVYFEDVKIPVENVLGE------VGDGFK------VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGK 298 (409)
T ss_pred CCCceEEEeccEEECHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc
Confidence 9999999999999999999984 444433 4556788899999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHH
Q 007523 315 KNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEEC 394 (600)
Q Consensus 315 ~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~ 394 (600)
||.++|.+|++|+++.+.+++++.+++.+++.+++ .. ..+....++++|+++++.+.++++.|
T Consensus 299 -------~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~-------~~---~~~~~~~~~~aK~~a~~~a~~v~~~a 361 (409)
T cd01161 299 -------KIHEFGLIQEKLANMAILQYATESMAYMTSGNMDR-------GL---KAEYQIEAAISKVFASEAAWLVVDEA 361 (409)
T ss_pred -------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC---CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877652 11 11345568999999999999999999
Q ss_pred HHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHH
Q 007523 395 RKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 395 ~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
+|+|||.||+.++++++++||++...+++|++++++.+|++.+|++
T Consensus 362 ~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 362 IQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999865
No 16
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.7e-49 Score=422.91 Aligned_cols=365 Identities=22% Similarity=0.298 Sum_probs=300.6
Q ss_pred CCCCHHHHHHH-HcC--ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h-h
Q 007523 14 AQFDVDEMKIV-WAG--SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E-A 85 (600)
Q Consensus 14 ~~f~~~~l~~~-~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~-g 85 (600)
+-|.+.-|++. ++. ++||.++++++++|+.++..-.. .+ ......+..++|+.+.+.||.+ + |
T Consensus 13 ~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~--------~~-~~~~~~~p~~~~~~l~~~G~~~~~v~~~G 83 (412)
T PLN02526 13 SIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIM--------TE-YWEKAEFPFHIIPKLGSLGIAGGTIKGYG 83 (412)
T ss_pred CCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccch--------HH-HHHhCCCCHHHHHHHHHCCCCcCcccccC
Confidence 34555555444 433 58999999999999987421100 01 0111234467899999999987 2 4
Q ss_pred hhhhhhc------------cCc--chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceE
Q 007523 86 SMLRSSV------------DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETT 151 (600)
Q Consensus 86 ~~~~~~~------------~~~--~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~Tt 151 (600)
|.+.++. +.+ ..+.+|..++...|..+|+++|+++|+|++++|+.++|+++|||++|||+.++.|+
T Consensus 84 G~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~ 163 (412)
T PLN02526 84 CPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTT 163 (412)
T ss_pred CCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeE
Confidence 4332111 112 12345666666789999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCC
Q 007523 152 ATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 231 (600)
Q Consensus 152 A~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~ 231 (600)
|+++ +|+|+|| |+|+||+| +..||+++|+|+++.+ .++++|+|| .+.|||++.+.|+++|
T Consensus 164 a~~~--~gg~~ln-----G~K~~vs~-~~~Ad~~lv~a~~~~~---~~~~~flV~-------~~~~Gv~~~~~~~~~G-- 223 (412)
T PLN02526 164 ATKV--EGGWILN-----GQKRWIGN-STFADVLVIFARNTTT---NQINGFIVK-------KGAPGLKATKIENKIG-- 223 (412)
T ss_pred EEEE--CCEEEEE-----EEEeeecC-CCccCEEEEEEEeCCC---CCeEEEEEc-------CCCCCeEcCCCCCccC--
Confidence 9998 7899999 99999999 8999999999997532 358899999 7789999999999999
Q ss_pred CcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007523 232 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQ 311 (600)
Q Consensus 232 ~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~q 311 (600)
+++++++.|.|+||+||++++|+. .+ ... .....+...|+.+++.++|+++++++.+++|+++|+|
T Consensus 224 -~r~t~s~~v~f~~v~Vp~~~~l~~------~~-~~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~ 289 (412)
T PLN02526 224 -LRMVQNGDIVLKDVFVPDEDRLPG------VN-SFQ------DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQ 289 (412)
T ss_pred -cCCCCeeEEEEeeEEECHHHhCCC------cc-cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 999999999999999999999973 22 111 3345677899999999999999999999999999999
Q ss_pred cCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHH
Q 007523 312 FGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGI 391 (600)
Q Consensus 312 fg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~ 391 (600)
||+ ||++||.+|+++++|.+.+++++.+++++++.++. +. .....++++|+++++.+.+++
T Consensus 290 fg~-------~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~ 350 (412)
T PLN02526 290 FGA-------PLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYES-------GK-----MTPGHASLGKAWITKKARETV 350 (412)
T ss_pred CCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CChHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999998876652 11 113347889999999999999
Q ss_pred HHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHH
Q 007523 392 EECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 392 ~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
+.|+|+|||+||+++++++++|||++...+++|++++++..+++.+++.
T Consensus 351 ~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 351 ALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999763
No 17
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.1e-49 Score=403.74 Aligned_cols=472 Identities=21% Similarity=0.227 Sum_probs=357.7
Q ss_pred HHHHHHHHHcccch-----h-hhhhhh------hc------cC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccc
Q 007523 70 AYAWKRIIELRLSE-----E-ASMLRS------SV------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 129 (600)
Q Consensus 70 ~~~~~~~~~~G~~~-----~-g~~~~~------~~------~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 129 (600)
...|..++++|..+ + +|.+.. ++ +. ++.+..|.++....|..+||++||++|||++++|+
T Consensus 112 ~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~ 191 (634)
T KOG0137|consen 112 ETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGK 191 (634)
T ss_pred hhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCC
Confidence 34578888999877 1 333211 11 11 33345666677778999999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCC----CCCceEEEEE
Q 007523 130 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFIV 205 (600)
Q Consensus 130 ~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~----~~~g~~~flV 205 (600)
.+++||+|||..|||+.++.|+|+..++++.|+|| |.|.||+| +..||+++|||++..++ ..+++++|||
T Consensus 192 ~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Flv 265 (634)
T KOG0137|consen 192 LIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFLV 265 (634)
T ss_pred ccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEec-CccceeeeeeeccccCCCCccccCceEEEEE
Confidence 99999999999999999999999999999999999 99999999 99999999999997543 2378999999
Q ss_pred eeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHH
Q 007523 206 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 285 (600)
Q Consensus 206 ~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~ 285 (600)
+ ++..||+-++...|+| .++++.+.|.|++|.||.+|+||. +|.++. +.+..++.+|+
T Consensus 266 e-------r~~~Gvt~G~~e~k~G---iKgsnt~~v~f~~~ki~~envlG~------~G~G~k------va~nilnsgR~ 323 (634)
T KOG0137|consen 266 E-------RDFGGVTNGPPEKKMG---IKGSNTAEVHFEGVKIPIENVLGK------PGDGFK------VAMNILNSGRF 323 (634)
T ss_pred e-------ccccCccCCCchhhhc---ccccceeeeeeccccccHHHhcCC------CCcchH------HHHHHHccCCc
Confidence 9 6788999999999999 999999999999999999999995 788776 77888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 007523 286 TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 365 (600)
Q Consensus 286 ~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 365 (600)
.+++..+|.++++++.+.+|+..|.|||. ++.+|-.+|.+++.|...+|++.++.+..+..+|+
T Consensus 324 ~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~--------- 387 (634)
T KOG0137|consen 324 GMAAALLGLMKRIIEEAADYATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDE--------- 387 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc---------
Confidence 99999999999999999999999999999 99999999999999999999999999987665542
Q ss_pred CCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhc
Q 007523 366 FSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLG 445 (600)
Q Consensus 366 ~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~ 445 (600)
....+.+..+++.|.++++.++.++++++|++||+||+.+.++++.+||++..+|+||+|++++.-||..-+...++..
T Consensus 388 -~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q~ag~~l 466 (634)
T KOG0137|consen 388 -VGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQHAGKHL 466 (634)
T ss_pred -ccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHHhhhHHH
Confidence 2235678889999999999999999999999999999999999999999999999999999999999987665443211
Q ss_pred -------CCCCCccccccccchhHHhhhcCCccccCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHhcCChhhhHHHHHH
Q 007523 446 -------YGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEA--FEARAIRMSVACAQNLSKFTNQEEGFAELAA 516 (600)
Q Consensus 446 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~ 516 (600)
+..||--...=..+.....+ .-......+..||+....+ ++.... ++..+.+++-. ++.+...+-+.
T Consensus 467 ~~~~r~~kn~n~gli~~~~~~~~~~~g-~~~~~~ls~hvhpsL~~saq~~e~~~~-~~~~~Ve~ll~--k~~k~iv~~q~ 542 (634)
T KOG0137|consen 467 ATGVRALKNANPGLIGGKVSRLRSLRG-PGTGLYLSEHVHPSLQDSAQKLESSLA-RFQQVVEKLLT--KHGKGIVEEQS 542 (634)
T ss_pred HHHHHHhhcCCcchhcchhhhhhhccC-CCcccccccccCHHHHHHHHHHHHHHH-HHHHHHHHHHH--HhccchhHHHH
Confidence 11122100000001111111 0011223455677765542 222211 12222333221 23445556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC----CCCChHHHHHHHHHHHhHHHHHhchhHHHhcCCCC-HHHHHHHHHHHHH
Q 007523 517 DLVEAAVAHCQLIVVSKFIEKLQQDI----PGKGVKPILEILCHIYALHLVHKHLGDFVSTGCIT-AKQASLANEQLRS 590 (600)
Q Consensus 517 ~l~~la~a~~e~~il~~F~~~v~~~~----~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~~~ls-~~~~~~i~~~v~~ 590 (600)
.+.++|.+-+..|.+-.-+++.+++. +..+..-.+....+.-+-....+........+..+ -.++..+.+++.+
T Consensus 543 ~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~~~~~~d~~i~~~sk~v~e 621 (634)
T KOG0137|consen 543 VLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSGHVVNLDRNIVSLSKTVLE 621 (634)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcHHHHHHHHHHHh
Confidence 88999999999999999999998752 23334444444444445555555554333343444 4446666666654
No 18
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=2.8e-49 Score=418.57 Aligned_cols=351 Identities=23% Similarity=0.291 Sum_probs=294.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc----------
Q 007523 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV---------- 92 (600)
Q Consensus 29 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~---------- 92 (600)
+||.++++.+++|+.+.-. +. ...++....+..++|+.+.+.||.+ + ||.+..+.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~-~~--------~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la 71 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVA-PF--------HHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELA 71 (372)
T ss_pred ChHHHHHHHHHHHHHHhCc-hh--------HHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
Confidence 4788999999999987421 10 1112222224467899999999987 1 44332111
Q ss_pred --cCc-chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 007523 93 --DEP-AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 169 (600)
Q Consensus 93 --~~~-~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~ 169 (600)
..+ ..+.+|..++...+..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|+++ +++|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~----- 144 (372)
T cd01160 72 RAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN----- 144 (372)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----
Confidence 112 124557656777899999999999999999999999999999999999999999999998 7899999
Q ss_pred ccccccCCCCCCccEEEEEEEEecC-CCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceec
Q 007523 170 SSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 248 (600)
Q Consensus 170 G~K~~v~~~a~~A~~~vV~A~~~~~-~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 248 (600)
|+|+||+| +..||+++|+|++..+ +.+.++++|+|| .+.|||++.+.|+++| +++++++.|.|+||+|
T Consensus 145 G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~V 213 (372)
T cd01160 145 GSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVE-------RGTPGFSRGRKLKKMG---WKAQDTAELFFDDCRV 213 (372)
T ss_pred eEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEe-------CCCCCeecCCcccccc---CCCCCeEEEEecceEc
Confidence 99999999 8999999999998654 234688999999 6789999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHH
Q 007523 249 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~ 328 (600)
|.+++|+. ++.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~ 274 (372)
T cd01160 214 PAENLLGE------ENKGFY------YLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGK-------TLAQLQV 274 (372)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHH
Confidence 99999985 443332 4456677889999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007523 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 408 (600)
+|++|++|.+.+++++.+++.+++.+++ .. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 275 vq~~la~~~~~~~~a~~~~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~ 342 (372)
T cd01160 275 VRHKIAELATKVAVTRAFLDNCAWRHEQ-------GR-----LDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYP 342 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCH
Confidence 9999999999999999999988765541 11 12345788999999999999999999999999999999
Q ss_pred hhhhhcccccccccccchHHHHHHHHHHH
Q 007523 409 LPELFAVYVPACTYEGDNIVLLLQVARFL 437 (600)
Q Consensus 409 l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 437 (600)
++++|||++...+++|++++++.++++.+
T Consensus 343 l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 343 IARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999865
No 19
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=5.4e-49 Score=417.22 Aligned_cols=354 Identities=21% Similarity=0.286 Sum_probs=292.6
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc---------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV--------- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~--------- 92 (600)
++||.++++++++|+.+...... ...++. ..+..++|+.+.+.||.+ + ||.+.++.
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~---~~~d~~------~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l 72 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVA---AEYDKS------GEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEEL 72 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccch---HHHHhh------CCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 47889999999999988532111 111111 123467899999999988 1 44332211
Q ss_pred ---cCcchhhhh-hhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007523 93 ---DEPAFTDLH-WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 168 (600)
Q Consensus 93 ---~~~~~~~~h-~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 168 (600)
+.+.++.++ ..+....+..+|+++||++|||++.+|+.++++++|||++|||+.++.|+|+++ +|+|+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~---- 146 (378)
T cd01157 73 AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN---- 146 (378)
T ss_pred HhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe----
Confidence 112222222 134444567789999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEecCCC---CCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecc
Q 007523 169 TSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 245 (600)
Q Consensus 169 ~G~K~~v~~~a~~A~~~vV~A~~~~~~~---~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 245 (600)
|+|+|+++ +..||+++|+|++++++. ..++.+|+|| .+.|||++.+.|.++| +++++++.+.|+|
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~s~~~~~~~ 214 (378)
T cd01157 147 -GQKMWITN-GGKANWYFLLARSDPDPKCPASKAFTGFIVE-------ADTPGIQPGRKELNMG---QRCSDTRGITFED 214 (378)
T ss_pred -eEEEeecC-CccCCEEEEEEEeCCcccCCCCCceEEEEEc-------CCCCCeeccCcccccC---CCCCCceEEEecc
Confidence 99999999 899999999999864332 3578899999 7789999999999999 9999999999999
Q ss_pred eecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 007523 246 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 246 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~ 325 (600)
|+||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 215 v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-------~i~~ 275 (378)
T cd01157 215 VRVPKENVLIG------EGAGFK------IAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGK-------LIAE 275 (378)
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-------cHHH
Confidence 99999999984 454433 4556677789999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007523 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 405 (600)
||.+|++|++|.+.+++++.+++.+++.++. +. .....++++|+++++.+.++++.|+|+|||.||++
T Consensus 276 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 343 (378)
T cd01157 276 HQAVSFMLADMAMKVELARLAYQRAAWEVDS-------GR-----RNTYYASIAKAFAADIANQLATDAVQIFGGNGFNS 343 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 9999999999999999999999998776541 11 12345678999999999999999999999999999
Q ss_pred CCChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 406 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 406 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++++++|||++...+++|++++++..+++.++.
T Consensus 344 ~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 344 EYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred CCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998864
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-47 Score=425.36 Aligned_cols=331 Identities=19% Similarity=0.186 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHcccch-----h-hhhhhhhc------c------C--cchhhhhhhhh-HHHHhcCCCHHHHHhHHHHHh
Q 007523 68 KAAYAWKRIIELRLSE-----E-ASMLRSSV------D------E--PAFTDLHWGMF-VPAIKGQGTDEQHQKWLPLAY 126 (600)
Q Consensus 68 ~~~~~~~~~~~~G~~~-----~-g~~~~~~~------~------~--~~~~~~h~~l~-~~~i~~~gt~eq~~~~l~~i~ 126 (600)
+..++|+.+++.||.+ + ||.+.+.. + . +..+.+|..++ +.+|..+||+|||++|||+++
T Consensus 109 ~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LA 188 (774)
T PRK13026 109 LPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLA 188 (774)
T ss_pred CCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHh
Confidence 3467899999999997 2 44332111 1 1 12234555554 357899999999999999999
Q ss_pred ccceeeEEeccCCCCCCCCCCCceEEEE---eCCCC---eEEEecCCCCccccccCCCCCCccEEEEEEEE-ecC-----
Q 007523 127 KMEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD----- 194 (600)
Q Consensus 127 ~g~~~~~~a~tE~~~Gsd~~~~~TtA~~---d~~~~---~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~-~~~----- 194 (600)
+|+.++||++|||++|||+.++.|+|+. +.+|+ +|+|| |+|+|||+ ++.||+++|.+++ +++
T Consensus 189 sGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g~ 262 (774)
T PRK13026 189 DGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITL-APVATVLGLAFKLRDPDGLLGD 262 (774)
T ss_pred CCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecC-ccccCEEEEEEEeeCccccccC
Confidence 9999999999999999999999977652 12365 69999 99999999 9999999888764 333
Q ss_pred CCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchh
Q 007523 195 GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQ 274 (600)
Q Consensus 195 ~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~ 274 (600)
+++.|+++|+|| .+.|||++++.++++| +++ .++.+.|+||+||.+++||+. +..|.++.
T Consensus 263 ~~~~GiT~fLVp-------~d~pGV~ig~~~~~lG---~~~-~~g~v~fdDV~VP~d~lLG~~---~~~G~G~~------ 322 (774)
T PRK13026 263 KKELGITCALIP-------TDHPGVEIGRRHNPLG---MAF-MNGTTRGKDVFIPLDWIIGGP---DYAGRGWR------ 322 (774)
T ss_pred CCCCceEEEEEE-------CCCCCeEeeccccccc---cCc-ccceEEEeeeEccHHHhcCCc---ccCChHHH------
Confidence 235689999999 7889999999999999 886 468999999999999999851 01366654
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHH---HHHHHHHHHHHH
Q 007523 275 LLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA---SAYAFRFVGEWL 350 (600)
Q Consensus 275 ~~~~~l~~~r-~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a---~~~a~~~~~~~~ 350 (600)
.+...++.+| +.+++.++|+++.+++.+++|+++|+|||+ ||++||.+|++|++|.+ .+++++.+++.+
T Consensus 323 ~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a 395 (774)
T PRK13026 323 MLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTTG 395 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999 899999999999999999999999999999 99999999999999998 567777776654
Q ss_pred HHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC--CChhhhhcccccccccccchHH
Q 007523 351 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIV 428 (600)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~--~~l~~~~rd~~~~~~~~G~~~v 428 (600)
. + .+. .....++++|+++++.+.+++++|+|+|||.||+++ ++++++|||++...+++|+|++
T Consensus 396 ~---D-------~G~-----~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei 460 (774)
T PRK13026 396 L---D-------LGV-----KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANIL 460 (774)
T ss_pred H---H-------CCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHH
Confidence 2 2 111 124568999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHH--HH-------HHHHHHHHhcC
Q 007523 429 LLLQV--AR-------FLMKTVSQLGY 446 (600)
Q Consensus 429 l~~~i--a~-------~ll~~~~~~~~ 446 (600)
++..+ +. ++++++..++.
T Consensus 461 ~R~l~ifgqga~rchp~~~~e~~a~~~ 487 (774)
T PRK13026 461 TRNLMIFGQGATRCHPYVLAEMEAAAM 487 (774)
T ss_pred HHHHHHhhccHhhCCchHHHHHHHhhC
Confidence 98743 22 46666665543
No 21
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.4e-49 Score=415.14 Aligned_cols=357 Identities=18% Similarity=0.148 Sum_probs=292.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc--------
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV-------- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~-------- 92 (600)
-++||.++++++|+|++++..-+. ...++....+..+.|+.+.+.||.+ + ||.+..+.
T Consensus 5 ~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~ 76 (380)
T PRK03354 5 LNDEQELFVAGIRELMASENWEAY--------FAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWME 76 (380)
T ss_pred CCHHHHHHHHHHHHHHHhccCChh--------HHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHH
Confidence 358899999999999987532111 0112222234467899999999987 1 54332211
Q ss_pred ----cCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007523 93 ----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 168 (600)
Q Consensus 93 ----~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 168 (600)
+.+.++..+.......|..+|+++|+++|||++.+|+.+.|+++|||++|||+..+.|+|+.+ +|+|+||
T Consensus 77 la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln---- 150 (380)
T PRK03354 77 LGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN---- 150 (380)
T ss_pred HHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe----
Confidence 113222222212345788899999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceec
Q 007523 169 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 248 (600)
Q Consensus 169 ~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 248 (600)
|+|+|+++ +.+||+++|+|+++.+.+..++..|+|| .+.|||++. .|+++| +++++++.|.|+||+|
T Consensus 151 -G~K~fis~-~~~ad~~~v~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~V 217 (380)
T PRK03354 151 -GSKCFITS-SAYTPYIVVMARDGASPDKPVYTEWFVD-------MSKPGIKVT-KLEKLG---LRMDSCCEITFDDVEL 217 (380)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceeEEEEE-------CCCCceEec-cccccC---CCCCCeEEEEEccEEe
Confidence 99999999 8999999999997533333567889999 678999997 589999 9999999999999999
Q ss_pred CccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHH
Q 007523 249 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~ 328 (600)
|.+++++. +|.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|.
T Consensus 218 p~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~ 278 (380)
T PRK03354 218 DEKDMFGR------EGNGFN------RVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGE-------AIGRFQL 278 (380)
T ss_pred cHHHcCCC------CChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHHhHH
Confidence 99999984 454432 3334566788899999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007523 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 408 (600)
+|++|++|.+.+++++.+++++++.+++ .. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 279 vq~~la~~~~~~~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 346 (380)
T PRK03354 279 IQEKFAHMAIKLNSMKNMLYEAAWKADN-------GT-----ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHR 346 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCh
Confidence 9999999999999999999998766541 11 11234778999999999999999999999999999999
Q ss_pred hhhhhcccccccccccchHHHHHHHHHHHHHHH
Q 007523 409 LPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 441 (600)
Q Consensus 409 l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 441 (600)
++++|||++...+++|++++++..+++.+++.+
T Consensus 347 l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 347 ISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999988654
No 22
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-49 Score=374.89 Aligned_cols=352 Identities=22% Similarity=0.280 Sum_probs=299.8
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-h----hhh-----hhhhc-----
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-E----ASM-----LRSSV----- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~----g~~-----~~~~~----- 92 (600)
++|...+|+++|.++++.-.. ...+..+.+. ++.++..+|..+|+.+ . |-. ..+++
T Consensus 56 T~dE~air~~~Reycq~~l~P---rvtea~r~e~------F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEve 126 (432)
T KOG0138|consen 56 TEDEIAIRDTFREYCQERLMP---RVTEANRNEV------FDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREVE 126 (432)
T ss_pred CHHHHHHHHHHHHHHHHHhhh---HHHHHhhhcc------CChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHHH
Confidence 467788999999999873210 1122223333 3467778888888887 2 111 11211
Q ss_pred --cC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007523 93 --DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 168 (600)
Q Consensus 93 --~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 168 (600)
+. ..++++|.++...+|..+|+++||++|||.+++|+.++||++|||.||||+.+++|+|+||..+..|.||
T Consensus 127 RVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN---- 202 (432)
T KOG0138|consen 127 RVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN---- 202 (432)
T ss_pred HhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC----
Confidence 22 3467899999999999999999999999999999999999999999999999999999999877789999
Q ss_pred CccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceec
Q 007523 169 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 248 (600)
Q Consensus 169 ~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 248 (600)
|+|.||+| ++.||.+||+||...+++ +.-|||+ ++++|++...+..|++ ++.+.+|.|.+|+|+|
T Consensus 203 -GsKtWI~n-sp~aDl~vvwAr~~t~n~---I~GFi~~-------k~~~GL~apkI~gK~s---LRas~tG~Ilmd~V~V 267 (432)
T KOG0138|consen 203 -GSKTWITN-SPMADLFVVWARCETDNK---IRGFILE-------KGMRGLSAPKIEGKFS---LRASATGMILMDGVEV 267 (432)
T ss_pred -CeeeeecC-CcccceEEEEEecccCCc---eeeEEEe-------cCCCCCcCCCcCCeee---eeecccCceeecCCcC
Confidence 99999999 999999999999875543 7789999 8999999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHH
Q 007523 249 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~ 328 (600)
|++++|.. -..+. -.++.++..|..++-.++|++..+++++.+|...|+|||+ |++.+|.
T Consensus 268 PeE~~LPg-------~~s~q------gpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~-------PLAanQL 327 (432)
T KOG0138|consen 268 PEENLLPG-------ASSLQ------GPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR-------PLAANQL 327 (432)
T ss_pred ChhhcCCC-------ccccC------CchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC-------chhHHHH
Confidence 99999952 11221 3457888999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007523 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 408 (600)
+|.+|++|+..+.+.-.+++++..++|+. ......++..|.+.+--++++++.++++.||.|.+.|+-
T Consensus 328 ~Q~Kladmltei~lgl~~clrl~rLkd~g------------~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyh 395 (432)
T KOG0138|consen 328 IQKKLADMLTEITLGLQACLRLGRLKDQG------------KATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYH 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc------------cCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHH
Confidence 99999999999999988999888877631 112345788999999999999999999999999999999
Q ss_pred hhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 409 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 409 l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+-+++-+....-+|||+-+++...++|.+.+
T Consensus 396 v~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 396 VIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred HHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 9999999999999999999999999998865
No 23
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-48 Score=413.40 Aligned_cols=355 Identities=17% Similarity=0.148 Sum_probs=293.1
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc--------
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV-------- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~-------- 92 (600)
-++||.+++++++.|+.+.-.-. .....+....+..++|+.+.+.||.+ + ||.+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~ 76 (381)
T PRK12341 5 LTEEQELLLASIRELITRNFPEE--------YFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEE 76 (381)
T ss_pred CCHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHH
Confidence 35788999999999998742100 01112222234467899999999987 1 44332211
Q ss_pred ----cCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHH-hccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLA-YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ----~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i-~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+ .+.++..+....|..+|+++||++|+|++ .+|+.++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 77 la~~~~~-~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln--- 150 (381)
T PRK12341 77 VSKCGAP-AFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN--- 150 (381)
T ss_pred HhhcChh-HHHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE---
Confidence 112 22234345566788899999999999998 599999999999999999999999999987 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCC-CCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~-~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+|+|| +..||+++|+|++..++. ..++.+|+|| .+.|||++. .|+++| +++++++.|.|+||
T Consensus 151 --G~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~-------~~~~gv~~~-~~~~~G---~~~~~~~~v~~~~v 216 (381)
T PRK12341 151 --GQKTFITG-AKEYPYMLVLARDPQPKDPKKAFTLWWVD-------SSKPGIKIN-PLHKIG---WHMLSTCEVYLDNV 216 (381)
T ss_pred --eEEEEEcC-CccCCEEEEEEEcCCCCCCCCceEEEEEe-------CCCCceeec-cccccc---CCCCCceEEEECcE
Confidence 99999999 899999999999764432 3578899999 778999995 589999 99999999999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++|+. +|.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.++
T Consensus 217 ~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~ 277 (381)
T PRK12341 217 EVEESDLVGE------EGMGFL------NVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGK-------PIGHN 277 (381)
T ss_pred EecHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-------cHHHh
Confidence 9999999985 444432 3345677889999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|+++.+.+++++.+++++++.+++ +. .....++++|.++++.+.++++.++|+|||+||..+
T Consensus 278 ~~v~~~la~~~~~~~aar~~~~~a~~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~ 345 (381)
T PRK12341 278 QLIQEKLTLMAIKIENMRNMVYKVAWQADN-------GQ-----SLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDE 345 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 999999999999999999999988765541 11 123457889999999999999999999999999999
Q ss_pred CChhhhhcccccccccccchHHHHHHHHHHHHHH
Q 007523 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
++++++|||++...+++|++++++.++++.+++.
T Consensus 346 ~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 346 ARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred CHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998864
No 24
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-48 Score=418.59 Aligned_cols=353 Identities=20% Similarity=0.229 Sum_probs=294.6
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc-------
Q 007523 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV------- 92 (600)
Q Consensus 26 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~------- 92 (600)
.-+++|.++++++++|+.+...-.. ...+....+..++|+.+.+.||.+ + ||.+....
T Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e 106 (410)
T PTZ00461 36 NPTPEHAALRETVAKFSREVVDKHA---------REDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHH 106 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCccH---------HHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHH
Confidence 3457899999999999977421110 111112234467899999999987 1 44322111
Q ss_pred -----cC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007523 93 -----DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 165 (600)
Q Consensus 93 -----~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 165 (600)
+. +.++.+|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||+.++.|+|+++. +++|+||
T Consensus 107 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg~~L~- 184 (410)
T PTZ00461 107 ELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGNYVLN- 184 (410)
T ss_pred HHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCeEEEE-
Confidence 11 22345565566777888999999999999999999999999999999999999999999873 3479999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecc
Q 007523 166 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 245 (600)
Q Consensus 166 p~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 245 (600)
|+|+||+| +..||+++|+|+++ .++.+|+|| .+.|||++.+.|+++| +++++++.+.|+|
T Consensus 185 ----G~K~~vs~-a~~Ad~~lv~a~~~-----~~~~~flVp-------~~~~Gv~v~~~~~~~G---~r~~~~~~l~f~~ 244 (410)
T PTZ00461 185 ----GSKIWITN-GTVADVFLIYAKVD-----GKITAFVVE-------RGTKGFTQGPKIDKCG---MRASHMCQLFFED 244 (410)
T ss_pred ----eEEEeECC-CccCCEEEEEEEeC-----CceEEEEEe-------CCCCCeecCCCCcccC---CCCCceEEEEEcc
Confidence 99999999 89999999999863 247899999 6789999999999999 9999999999999
Q ss_pred eecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 007523 246 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 246 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~ 325 (600)
|+||++++|+. +|.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 245 v~Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 305 (410)
T PTZ00461 245 VVVPAENLLGE------EGKGMV------GMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGK-------PISN 305 (410)
T ss_pred eecCHHHhCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCc-------CHHh
Confidence 99999999985 454433 4456677899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007523 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 405 (600)
+|.+|++|+++.+.+++++.+++.+++.++. .+ .....++++|.++++.+.++++.++|+|||+||+.
T Consensus 306 ~q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~ 373 (410)
T PTZ00461 306 FGQIQRYIAEGYADTEAAKALVYSVSHNVHP-------GN-----KNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSR 373 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 9999999999999999999999988765531 11 12345678999999999999999999999999999
Q ss_pred CCChhhhhcccccccccccchHHHHHHHHHHHHHH
Q 007523 406 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 406 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
+++++++|||++...+++|++++++..+++.+++.
T Consensus 374 ~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 374 DMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred CCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998763
No 25
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.5e-48 Score=413.66 Aligned_cols=354 Identities=21% Similarity=0.264 Sum_probs=296.9
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc---------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV--------- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~--------- 92 (600)
++||.++++.+++|+.++..... ...+....+..++|+.+.+.||.+ + ||.+..+.
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l 73 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPLA---------AKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEI 73 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHH
Confidence 46889999999999987422110 111111123467899999999987 2 44322111
Q ss_pred ---cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ---DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ---~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+. .+..|..++...|..+|+++|+++|+|++++|+.++++++|||++|||+..++|+|+++ +++|+||
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~--- 148 (376)
T cd01156 74 SRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN--- 148 (376)
T ss_pred hccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE---
Confidence 1132 23456656667899999999999999999999999999999999999999999999988 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+|++| +..||+++|+|++..+++..++.+|+|| ...|||++.+.|+++| +++++++.|.|+||+
T Consensus 149 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~ 215 (376)
T cd01156 149 --GSKMWITN-GPDADTLVVYAKTDPSAGAHGITAFIVE-------KGMPGFSRAQKLDKLG---MRGSNTCELVFEDCE 215 (376)
T ss_pred --EEEEEecC-CCcCCEEEEEEEeCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---CCCCCceEEEeCceE
Confidence 99999999 8999999999997655445678999999 6789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||++++|+. .+.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||
T Consensus 216 Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~ 276 (376)
T cd01156 216 VPEENILGG------ENKGVY------VLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQ-------PIGEFQ 276 (376)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------chHHhH
Confidence 999999984 344332 4556778899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|+++++|.+.+++++++++++++.++. +. . ....++.+|.++++.+.++++.++|+|||+||+.++
T Consensus 277 ~v~~~la~~~~~l~aar~~~~~aa~~~d~-------~~-~----~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 344 (376)
T cd01156 277 LVQGKLADMYTRLNASRSYLYTVAKACDR-------GN-M----DPKDAAGVILYAAEKATQVALDAIQILGGNGYINDY 344 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 99999999999999999999998876642 11 1 123467789999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++++|||++...+++|++++++..+++.++|
T Consensus 345 ~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 345 PTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998764
No 26
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=2.2e-48 Score=415.33 Aligned_cols=356 Identities=20% Similarity=0.275 Sum_probs=296.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc---------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV--------- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~--------- 92 (600)
+++|.++++.+++|+.+...-.. ...++...++ ....+|+.+.+.||.+ + ||.+....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~a---~~~d~~~~~p----~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~l 99 (404)
T PLN02519 27 DDTQLQFKESVQQFAQENIAPHA---AAIDATNSFP----KDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEI 99 (404)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch---HHHHhcCCCC----chHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHH
Confidence 47889999999999987421111 0111111111 1123699999999987 2 44332111
Q ss_pred ---cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ---DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ---~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+. .+.+|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 100 a~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln--- 174 (404)
T PLN02519 100 SRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLN--- 174 (404)
T ss_pred hhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEE---
Confidence 1122 24557666677899999999999999999999999999999999999999999999988 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+|++| +..||+++|+|+++.++++.|+.+|+|| ...|||++.+.|+++| +++++++.+.|+||+
T Consensus 175 --G~K~~vs~-a~~ad~~~v~a~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~G---~rgt~s~~v~f~~v~ 241 (404)
T PLN02519 175 --GNKMWCTN-GPVAQTLVVYAKTDVAAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFENCF 241 (404)
T ss_pred --eEEEeecC-CCcCCEEEEEEEeCCCCCCCeeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEEeCeEE
Confidence 99999999 8999999999998655455688999999 6789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++++. .|.+.. .....+...|+.+++.++|+++++++.+++|+++|.|||+ |+.++|
T Consensus 242 Vp~~~~lg~------~~~G~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------pl~~~~ 302 (404)
T PLN02519 242 VPEENVLGQ------EGKGVY------VMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGR-------PIGEFQ 302 (404)
T ss_pred ecHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------cHHHhH
Confidence 999999985 343332 3445677889999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++++++.+++.++. +. . ....++.+|.++++.+.++++.++|+|||+||+.++
T Consensus 303 ~v~~~la~~~~~l~aar~~~~~aa~~~~~-------~~-~----~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~ 370 (404)
T PLN02519 303 FIQGKLADMYTSLQSSRSYVYSVARDCDN-------GK-V----DRKDCAGVILCAAERATQVALQAIQCLGGNGYINEY 370 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCC
Confidence 99999999999999999999998876642 11 1 123467789999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++++|||++...+++|++++++..+++.+++
T Consensus 371 ~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~ 402 (404)
T PLN02519 371 PTGRLLRDAKLYEIGAGTSEIRRMLIGRELFK 402 (404)
T ss_pred hHHHHHHhhhcceeeCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999876
No 27
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=4.2e-48 Score=409.30 Aligned_cols=349 Identities=21% Similarity=0.196 Sum_probs=287.6
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc---------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV--------- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~--------- 92 (600)
++||.++++.+++|+.+...... ...+....+..++|+.+.+.||.+ + ||.+..+.
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~---------~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~l 72 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGF---------KERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQI 72 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHH
Confidence 46888999999999987432111 011111234567899999999987 1 44332211
Q ss_pred ---cCcchhh-hhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007523 93 ---DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 168 (600)
Q Consensus 93 ---~~~~~~~-~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 168 (600)
+.+.++. .+..+++..+..+|+++|+++|||++.+|+.++++++|||++|||+.++.|+|+++ +|+|+||
T Consensus 73 a~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln---- 146 (372)
T TIGR03207 73 ARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN---- 146 (372)
T ss_pred HhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE----
Confidence 1132222 11234556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEecCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 169 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 169 ~G~K~~v~~~a~~A~~~vV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+||+| +..||+++|+|++..++ ...++.+|+|| .+.|||++. .|+++| +++++++.|.|+||+
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 213 (372)
T TIGR03207 147 -GEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVP-------MDLPGITRN-RFDCHG---QRAIGRGSIFFENVR 213 (372)
T ss_pred -EEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEc-------CCCCCeecC-cchhcc---CCCCCeeEEEECcee
Confidence 99999999 89999999999975432 23578899999 678999985 589999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++|+. ++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 214 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~-------~i~~~q 274 (372)
T TIGR03207 214 VPADHMLGN------EGQGFV------QVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGK-------PLSAFQ 274 (372)
T ss_pred ccHHHcCCC------CChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhhH
Confidence 999999984 444432 3455678899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++++++++++.++. +. .....++++|.++++.+.++++.|+|+|||.||+.+
T Consensus 275 ~v~~~la~~~~~~~~ar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~- 341 (372)
T TIGR03207 275 GVSHPLADAETQVEAARLLCLQTLWLKDH-------GL-----PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG- 341 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-
Confidence 99999999999999999999998776541 11 113357889999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARF 436 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ 436 (600)
+++++|||++...+++|++++++.+|++.
T Consensus 342 ~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 342 DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999873
No 28
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9.7e-48 Score=408.67 Aligned_cols=357 Identities=16% Similarity=0.165 Sum_probs=282.1
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h--hhhhhhhc--------
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E--ASMLRSSV-------- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~--g~~~~~~~-------- 92 (600)
-++||.++++++++|+.++........ +.....++. ....++|+.+.++||.+ + ||.+.++.
T Consensus 4 lteeq~~l~~~~r~f~~~~~~~~~~~~--~~~~~~~~~--~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~ee 79 (395)
T TIGR03204 4 FSKEEQAFRDEVRSFFKDNVPADTRQK--LVEGRHLTK--DEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEE 79 (395)
T ss_pred CCHHHHHHHHHHHHHHHHhCChhhhhh--hhccCCCCh--HHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 358999999999999987533211000 000000110 11136899999999998 2 44332211
Q ss_pred ----cCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007523 93 ----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 168 (600)
Q Consensus 93 ----~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 168 (600)
..|.|+..+..+.+..|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|+++ +++|+||
T Consensus 80 lg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln---- 153 (395)
T TIGR03204 80 LQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKK--GDKWIIN---- 153 (395)
T ss_pred HHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEc--CCEEEEe----
Confidence 124454444335556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEecCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 169 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 169 ~G~K~~v~~~a~~A~~~vV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+||++ +..||+++|+|+++.++ +..|+++|+|| .+.|||++.+...+.| +.+++.|.|+||+
T Consensus 154 -G~K~~vt~-a~~Ad~~lv~a~~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~~-----~~~~~~v~f~~v~ 219 (395)
T TIGR03204 154 -GQKTWTTL-AQHADWIFCLCRTDPTAKKQMGISFILVD-------MKSKGITVRPIQTIDG-----GVEVNEVFFDDVE 219 (395)
T ss_pred -eEEEeecC-CccCCeEEEEEEeCCCCCCCCCeEEEEEe-------CCCCCeEecChhhccC-----CCceeEEEEcceE
Confidence 99999999 99999999999975332 34678999999 6789999987655433 5668999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++|+. .+.++. .....+...|+.+++ +|.++++++.+++|+++|+|||+ ||++||
T Consensus 220 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~-------~i~~~q 278 (395)
T TIGR03204 220 VPYENLVGE------ENKGWD------YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK-------PVIEDA 278 (395)
T ss_pred EcHHHcCCC------CCchHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC-------ccccCH
Confidence 999999984 344433 556677788887765 79999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHH----------
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL---------- 397 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~---------- 397 (600)
.+|++|++|.+.+++++.++++++..... .+.. .....++++|.++++.+.++++.|+|+
T Consensus 279 ~vq~~la~~~~~~~aar~l~~~aa~~~~~------~~~~----~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~ 348 (395)
T TIGR03204 279 KFREKLAAVEIELKALELTQLRVVADEGK------HGKG----KPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDV 348 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99999999999999999999998632110 0111 112458999999999999999999985
Q ss_pred hcccccccC----CChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 398 CGGHGYLCS----SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 398 ~Gg~Gy~~~----~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
|||.||+.+ +++.++|||++...+++|++++++..|++.+|
T Consensus 349 ~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l 393 (395)
T TIGR03204 349 HGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL 393 (395)
T ss_pred cccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence 889999955 57999999999999999999999999999876
No 29
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7e-47 Score=402.76 Aligned_cols=358 Identities=18% Similarity=0.209 Sum_probs=287.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCccccccHHHH-H----HHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc------c
Q 007523 31 AFQVSDRIARLVASDPAFRKDNRAMLSRKEL-F----KNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV------D 93 (600)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~------~ 93 (600)
.+++++++|+|++++..-.. ..+++... . ..+.....++|+.+.++||.+ + ||.+.++. +
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e 79 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAE---QEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAE 79 (394)
T ss_pred HHHHHHHHHHHHHHhcCccH---HHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHH
Confidence 35799999999987532100 01111000 0 001123467899999999988 1 44332111 0
Q ss_pred -------Ccchhhhhh--hhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEE
Q 007523 94 -------EPAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVI 163 (600)
Q Consensus 94 -------~~~~~~~h~--~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~-~Gsd~~~~~TtA~~d~~~~~~vL 163 (600)
.+.++..+. ......|..+|+++|+++|||++++|+.++|+++|||+ .|||+..+.|+|+++ +|+|+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~L 157 (394)
T cd01155 80 ETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVI 157 (394)
T ss_pred HHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEE
Confidence 112222221 12335788999999999999999999999999999997 579999999999998 789999
Q ss_pred ecCCCCccccccCCCCCC--ccEEEEEEEEecCC--CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCC--cc
Q 007523 164 HSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT--MD 237 (600)
Q Consensus 164 ntp~~~G~K~~v~~~a~~--A~~~vV~A~~~~~~--~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~--~~ 237 (600)
| |+|+|+|| +.+ ||+++|+|+++.++ ++.++.+|+|| .+.|||++.+.|+++| +++ ++
T Consensus 158 n-----G~k~~vs~-~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp-------~~~~Gv~i~~~~~~~G---~r~~~t~ 221 (394)
T cd01155 158 N-----GRKWWSSG-AGDPRCKIAIVMGRTDPDGAPRHRQQSMILVP-------MDTPGVTIIRPLSVFG---YDDAPHG 221 (394)
T ss_pred E-----EEEEEEcC-CCCCCCCEEEEEEEeCCCcCCCCCceEEEEEe-------CCCCCeEeeccccccC---CCCCCCC
Confidence 9 99999999 754 78999999986442 23578899999 7789999999999999 997 56
Q ss_pred cceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007523 238 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 317 (600)
Q Consensus 238 ~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~ 317 (600)
++.|.|+||+||.+++|+. +|.+.. .....+...|+..++.++|+++++++.+++|++.|+|||+
T Consensus 222 s~~v~f~dv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~--- 286 (394)
T cd01155 222 HAEITFDNVRVPASNLILG------EGRGFE------IAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK--- 286 (394)
T ss_pred eeEEEEccEEecHHHcCCC------CChHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC---
Confidence 7899999999999999984 444433 4556777889999999999999999999999999999999
Q ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007523 318 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL 397 (600)
Q Consensus 318 ~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~ 397 (600)
||+++|.+|++|++|.+.+++++++++.+++.+++ ... .+....++++|+++++.+.++++.|+|+
T Consensus 287 ----~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~~---~~~~~~~~~aK~~~~~~a~~~~~~a~~~ 352 (394)
T cd01155 287 ----KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDT-------VGN---KAARKEIAMIKVAAPRMALKIIDRAIQV 352 (394)
T ss_pred ----cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCC---cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877642 110 1234568899999999999999999999
Q ss_pred hcccccccCCChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 398 CGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 398 ~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
|||+||+.+++++++|||++...+++|++++++.++++.++
T Consensus 353 ~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 353 HGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred hcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875
No 30
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1.4e-46 Score=398.23 Aligned_cols=353 Identities=25% Similarity=0.313 Sum_probs=294.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c----
Q 007523 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V---- 92 (600)
Q Consensus 29 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~---- 92 (600)
+||.++++.+++|+.+...... .. .+....+..+.|+.+.+.||.+ + ||.+..+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a---~~------~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~ 71 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLA---AE------MDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELA 71 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccch---HH------HhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHH
Confidence 4688999999999975321111 01 1111123456899999999987 2 4432111 1
Q ss_pred --cCc--chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007523 93 --DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 168 (600)
Q Consensus 93 --~~~--~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 168 (600)
+.+ ..+.+|..++...+..+|+++|+++|++++.+|+.++++++|||++|||+..++|+|+++ +++|+||
T Consensus 72 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~---- 145 (373)
T cd01158 72 KVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN---- 145 (373)
T ss_pred hhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe----
Confidence 112 234567656777888999999999999999999999999999999999999999999998 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceec
Q 007523 169 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 248 (600)
Q Consensus 169 ~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 248 (600)
|+|+|++| +..||+++|.|++..+++..++.+|+|| ...|||++.+.|+++| +++++++.|.|+||+|
T Consensus 146 -G~k~~vsg-~~~ad~~lv~a~~~~~~~~~~~~~~lvp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~~~~v~V 213 (373)
T cd01158 146 -GSKMWITN-GGEADFYIVFAVTDPSKGYRGITAFIVE-------RDTPGLSVGKKEDKLG---IRGSSTTELIFEDVRV 213 (373)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---cCCCCceEEEeCcEEe
Confidence 99999999 8999999999987554445678899999 6789999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHH
Q 007523 249 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~ 328 (600)
|.+++|+. .|.+.. .....+..+|+.+++.++|+++++++.+++|+++|+|||. |+.++|.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~-------~~~~~~~ 274 (373)
T cd01158 214 PKENILGE------EGEGFK------IAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGK-------PIADFQG 274 (373)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------cHHHhHH
Confidence 99999985 343332 3455677889999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007523 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 408 (600)
+|++++++.+.+++++.+++.+++.++. .. +....++.+|+++++.+.++++.|+++|||.||+.+++
T Consensus 275 v~~~la~~~~~l~aa~~~~~~aa~~~~~-------~~-----~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~ 342 (373)
T cd01158 275 IQFKLADMATEIEAARLLTYKAARLKDN-------GE-----PFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYP 342 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCCh
Confidence 9999999999999999999988776541 11 23455788999999999999999999999999999999
Q ss_pred hhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 409 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 409 l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
++++|||++...+++|++++++.++++.+||
T Consensus 343 l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 343 VERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999875
No 31
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=6.5e-46 Score=395.73 Aligned_cols=357 Identities=27% Similarity=0.344 Sum_probs=291.4
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c----
Q 007523 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V---- 92 (600)
Q Consensus 29 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~---- 92 (600)
+++.++++.+++|+.++..... ....+.. . ......+.|+.+.+.|+.+ + ||.+... .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~--~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 7 EEQEALRAEVREFAEEELAPEA---AEIDRRI-E--DERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCcch---hhhhhhc-c--cccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 5677899999999987543100 0111100 0 1111257788999999987 2 4321111 1
Q ss_pred --cCc--chhhhhhh---hhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCc-eEEEEeCCCCeEEEe
Q 007523 93 --DEP--AFTDLHWG---MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLE-TTATFDPQTDEFVIH 164 (600)
Q Consensus 93 --~~~--~~~~~h~~---l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~-TtA~~d~~~~~~vLn 164 (600)
+.+ ..+.+|.. .....+..+|+++|+++|||++.+|+.++|+++|||++|||+.++. |+++.+ +++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~~ln 158 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDYVLN 158 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEec--CCCEEEE
Confidence 111 12223221 2334677899999999999999999999999999999999999998 666664 3449999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEEecC-CCCCceEEEEEeeccCCCCCC-CCCeEEeccCCccCCCCcCCcccceEE
Q 007523 165 SPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSP-LPGITIGDIGMKFGNGAYNTMDNGVLR 242 (600)
Q Consensus 165 tp~~~G~K~~v~~~a~~A~~~vV~A~~~~~-~~~~g~~~flV~~rd~~~~~~-~pGv~i~~~~~~~G~~~~~~~~~~~v~ 242 (600)
|+|+|||| +..||+++|+|+++.+ .+.+|+++|+|| .+ .|||++.+.+.+.| +++++++.|.
T Consensus 159 -----G~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~flV~-------~~~~~Gv~~~~~~~~~G---~r~~~~~~v~ 222 (393)
T COG1960 159 -----GQKIWISN-APVADWLLVLARTDPAPGKHKGISLFLVP-------KDLTPGVSVGPILKKMG---LRGSATGEVF 222 (393)
T ss_pred -----eEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEEEEe-------CCCCCCeeeccccCcCC---cCCCCeeEEE
Confidence 99999999 9999999999998765 456799999999 66 59999999977548 9999999999
Q ss_pred ecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc
Q 007523 243 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 322 (600)
Q Consensus 243 f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~ 322 (600)
|+||+||.++++|. .|.++. .....+..+|+.+++.++|.++++++.+++|+++|+|||+ |
T Consensus 223 f~~v~vp~~~lig~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~ 283 (393)
T COG1960 223 FDDVRVPAENLLGE------EGDGFK------IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR-------P 283 (393)
T ss_pred ECCeeccHHHcCCc------CCchHH------HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC-------c
Confidence 99999999999983 566554 6778889999999999999999999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007523 323 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 402 (600)
Q Consensus 323 i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~G 402 (600)
|++||.+|++|++|.+.+++++.+++++++..+. .. .....++++|.++++.+.++++.++|+|||.|
T Consensus 284 i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~-------~~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g 351 (393)
T COG1960 284 IADFQLVQFKLADMAAELEAARLLVLRAAELADA-------GD-----DAGAEAAMAKLFATEAALEVADEAVQVHGGYG 351 (393)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999997766542 11 12267899999999999999999999999999
Q ss_pred cccCCChhhhhcccccccccccchHHHHHHHHHHHHHH
Q 007523 403 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 403 y~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
|+.+++++++|||++...+++|++++++..+++.+++.
T Consensus 352 ~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~ 389 (393)
T COG1960 352 YTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGL 389 (393)
T ss_pred cccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999875
No 32
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=1.2e-45 Score=424.93 Aligned_cols=289 Identities=19% Similarity=0.255 Sum_probs=256.9
Q ss_pred hHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCC--CC
Q 007523 105 FVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--KV 181 (600)
Q Consensus 105 ~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~-~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a--~~ 181 (600)
.+.+|..+|+++||++|||++++|+.++|+++|||+ +|||+.++.|+|+++ +|+|+|| |+|+||+| + ..
T Consensus 525 ~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtg-a~~~~ 596 (822)
T PLN02876 525 NMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSG-AMDPR 596 (822)
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecC-CCCCC
Confidence 345788999999999999999999999999999997 789999999999987 7899999 99999998 6 47
Q ss_pred ccEEEEEEEEecCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCc--ccceEEecceecCccccccccc
Q 007523 182 STHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVS 258 (600)
Q Consensus 182 A~~~vV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~--~~~~v~f~~v~VP~~~lL~~~~ 258 (600)
||+++|+|+++.++ +..++.+|+|| .+.|||++.+.|.++| +++. +++.|.|+||+||.+++|+.
T Consensus 597 ad~~lv~ar~~~~~~~~~~~s~flV~-------~~~pGv~i~~~~~~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg~-- 664 (822)
T PLN02876 597 CRVLIVMGKTDFNAPKHKQQSMILVD-------IQTPGVQIKRPLLVFG---FDDAPHGHAEISFENVRVPAKNILLG-- 664 (822)
T ss_pred CCEEEEEEecCCCCCCCCcceEEEEe-------CCCCCceeecccceec---cCCCCCCeeEEEEcceeechhheecC--
Confidence 99999999975432 23568899999 6789999999999999 9974 57899999999999999974
Q ss_pred cccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHH
Q 007523 259 QVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA 338 (600)
Q Consensus 259 ~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a 338 (600)
+|.+.. .+...+..+|+..++.++|++++|++.+++|+++|+|||+ ||+++|.+|++|++|.+
T Consensus 665 ----~g~g~~------~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~ 727 (822)
T PLN02876 665 ----EGRGFE------IAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGK-------LIAQHGSFLSDLAKCRV 727 (822)
T ss_pred ----CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------chhhCHHHHHHHHHHHH
Confidence 454433 5567778899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhccccc
Q 007523 339 SAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVP 418 (600)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~ 418 (600)
.+++++++++.+++.++.. .. .+....++++|+++++.+.+++++|+|+|||+||+++++++++|||++.
T Consensus 728 ~leaar~l~~~aa~~~d~~-------~~---~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~ 797 (822)
T PLN02876 728 ELEQTRLLVLEAADQLDRL-------GN---KKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATART 797 (822)
T ss_pred HHHHHHHHHHHHHHHHHcc-------CC---cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhh
Confidence 9999999999998776521 10 1234568899999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHH
Q 007523 419 ACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 419 ~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
..+++|++++++..+++.+++.
T Consensus 798 ~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 798 LRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred cccccChHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 33
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=8.6e-45 Score=377.62 Aligned_cols=326 Identities=27% Similarity=0.361 Sum_probs=280.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccchhhhhhhhhccCcchhhhhhhhhHHH
Q 007523 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEASMLRSSVDEPAFTDLHWGMFVPA 108 (600)
Q Consensus 29 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~~~~h~~l~~~~ 108 (600)
++|.++++.+++++.++...... ...+.....|+.+.++||. +++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~---------------------~~~~~ 47 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYAR------------ERRETPEEPWELLAELGLL---------------------LGAAL 47 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccHH------------hHHhhCCCCHHHHHHHHHH---------------------hchHH
Confidence 46788999999999875322110 0011224557788787764 56667
Q ss_pred HhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEE
Q 007523 109 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVY 188 (600)
Q Consensus 109 i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~ 188 (600)
|..+|+++|+++||+.+.+|+.++|+++|||++|||+..+.|+++++ +++|+|| |+|+|+++ +..||+++|+
T Consensus 48 l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~ad~~lv~ 119 (327)
T cd00567 48 LLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISN-GGDADLFIVL 119 (327)
T ss_pred HHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecC-CccCCEEEEE
Confidence 88899999999999999999999999999999999999999999988 6899999 99999999 8999999999
Q ss_pred EEEecCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCcee
Q 007523 189 ARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYV 267 (600)
Q Consensus 189 A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~ 267 (600)
|++..++ +..++.+|+|| .+.|||++.+.|.++| +++++++.+.|+||+||.+++++. .+.+.
T Consensus 120 a~~~~~~~~~~~~~~~lvp-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~l~~------~~~g~ 183 (327)
T cd00567 120 ARTDEEGPGHRGISAFLVP-------ADTPGVTVGRIWDKMG---MRGSGTGELVFDDVRVPEDNLLGE------EGGGF 183 (327)
T ss_pred EEeCCCCCCCCceEEEEEe-------CCCCCeEecccccccc---CCCCceEEEEECCEEecHHHcCCC------CCchH
Confidence 9976543 34578899999 6779999999999999 999999999999999999999984 33332
Q ss_pred ecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Q 007523 268 QSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVG 347 (600)
Q Consensus 268 ~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~ 347 (600)
. .....+...|+.+++.++|+++++++.+++|++.|+|||. |+.++|.+|++|+++.+.+++++.++
T Consensus 184 ~------~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~~~~~~ 250 (327)
T cd00567 184 E------LAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-------PLAEFQAVQFKLADMAAELEAARLLL 250 (327)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------ccccchHHHHHHHHHHHHHHHHHHHH
Confidence 2 3556677889999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchH
Q 007523 348 EWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNI 427 (600)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~ 427 (600)
+.+++.++. .. ......++++|+++++.+.++++.|+++|||+||+++++++++|||++...+++|+++
T Consensus 251 ~~a~~~~~~-------~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~ 319 (327)
T cd00567 251 YRAAWLLDQ-------GP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAE 319 (327)
T ss_pred HHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHH
Confidence 988776642 11 1245667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007523 428 VLLLQVAR 435 (600)
Q Consensus 428 vl~~~ia~ 435 (600)
+++.++++
T Consensus 320 ~~~~~~~~ 327 (327)
T cd00567 320 IQRLIIAR 327 (327)
T ss_pred HHHHHhcC
Confidence 99988763
No 34
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.8e-44 Score=385.99 Aligned_cols=328 Identities=21% Similarity=0.222 Sum_probs=270.6
Q ss_pred HHHHHHHHHcccch----h---hhhhh-----hhc-----cCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccc---
Q 007523 70 AYAWKRIIELRLSE----E---ASMLR-----SSV-----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME--- 129 (600)
Q Consensus 70 ~~~~~~~~~~G~~~----~---g~~~~-----~~~-----~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~--- 129 (600)
.++++.+.+.||.+ + ++... .++ ....|+.+|. .++.+|..+|+++|+ +|||++++|+
T Consensus 68 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~ 145 (418)
T cd01154 68 HALMRRLIEEGVINIEDGPAGEGRRHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKT 145 (418)
T ss_pred HHHHHHHHHcCCccCCchhhCCCcHHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCccc
Confidence 45677888888875 1 11111 111 1133444554 578899999998865 6999999997
Q ss_pred -eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecC-CCCCceEEEEEee
Q 007523 130 -IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQL 207 (600)
Q Consensus 130 -~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~-~~~~g~~~flV~~ 207 (600)
.++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+|+ + .||+++|+|+++++ ++..|+++|+||.
T Consensus 146 ~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~ 217 (418)
T cd01154 146 GLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GHKWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPR 217 (418)
T ss_pred chhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EEEEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEec
Confidence 899999999999999999999999874 6789999 99999999 8 99999999998754 3457999999995
Q ss_pred ccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHH
Q 007523 208 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 287 (600)
Q Consensus 208 rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~ 287 (600)
+.++ ...|||+|.+.|+++| ++++++++|.|+|| .+++||. .|.++. .+...+...|+.+
T Consensus 218 ~~~~--~~~~Gv~i~~~~~~~G---~r~~~~~ev~f~dv---~~~~lG~------~g~G~~------~~~~~l~~~R~~~ 277 (418)
T cd01154 218 LLED--GTRNGYRIRRLKDKLG---TRSVATGEVEFDDA---EAYLIGD------EGKGIY------YILEMLNISRLDN 277 (418)
T ss_pred cCCC--CCCCCeEecccccccC---CCCCCeEEEEecCc---CccccCC------CCccHH------HHHHHHHHHHHHH
Confidence 4322 1236999999999999 99999999999998 3788884 565554 5667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007523 288 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 367 (600)
Q Consensus 288 aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (600)
++.++|+++++++.+++|+++|++||+ ||+++|.+|++|+++.+.+++++++++++++.++... .....
T Consensus 278 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~----~~~~~ 346 (418)
T cd01154 278 AVAALGIMRRALSEAYHYARHRRAFGK-------PLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAA----ADKPV 346 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCChh
Confidence 999999999999999999999999999 9999999999999999999999999999987765310 00000
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 368 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 368 ~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
........++++|+++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+.|.+-
T Consensus 347 ~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 347 EAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 00112345788999999999999999999999999999999999999999999999999999999998774
No 35
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-44 Score=400.01 Aligned_cols=340 Identities=19% Similarity=0.191 Sum_probs=273.7
Q ss_pred HHHHHHHHHcccch-----h-hhhhhhhc-----cC-----cchhhhh--hh-hhHHHHhcCCCHHHHHhHHHHHhccce
Q 007523 70 AYAWKRIIELRLSE-----E-ASMLRSSV-----DE-----PAFTDLH--WG-MFVPAIKGQGTDEQHQKWLPLAYKMEI 130 (600)
Q Consensus 70 ~~~~~~~~~~G~~~-----~-g~~~~~~~-----~~-----~~~~~~h--~~-l~~~~i~~~gt~eq~~~~l~~i~~g~~ 130 (600)
.++|+.+.+.||.+ + ||.+.... .+ ..++.++ .. ....+|..+||++||++|||++.+|++
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~ 181 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEW 181 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCh
Confidence 36799999999998 1 44332111 11 1122221 11 234578999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCC-eEEEecCCCCccccccCCCCCCc----cEEEEEEEEecC-CCCCceEEEE
Q 007523 131 IGCYAQTELGHGSNVQGLETTATFDPQTD-EFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITD-GQDHGVNGFI 204 (600)
Q Consensus 131 ~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~-~~vLntp~~~G~K~~v~~~a~~A----~~~vV~A~~~~~-~~~~g~~~fl 204 (600)
++++++|||++|||+..++|+|+++ +| +|+|| |+|+||++ +.++ ++++|+||++++ .+..|+++|+
T Consensus 182 ~~t~alTEp~aGSD~~~l~T~A~~~--gdG~y~L~-----G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFl 253 (622)
T PTZ00456 182 SGTMCLTEPQCGTDLGQVKTKAEPS--ADGSYKIT-----GTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFL 253 (622)
T ss_pred hhhhhccCCccCCCcccCeeEEEEC--CCCcEEEe-----eEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEE
Confidence 9999999999999999999999987 44 69999 99999998 7763 578999998653 3457899999
Q ss_pred EeeccCCC---CCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHH
Q 007523 205 VQLRSLED---HSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 281 (600)
Q Consensus 205 V~~rd~~~---~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~ 281 (600)
||...++. ....+||++..+.+|+| +++++++.|.|+| |.+++||. ++.+.. .++..|+
T Consensus 254 Vp~~~~~~~G~~~~~~gv~~~~~~~kmG---~~gs~t~~l~fd~---~~~~llG~------~~~Gl~------~~~~~mn 315 (622)
T PTZ00456 254 VPRHVVKPDGSLETAKNVKCIGLEKKMG---IKGSSTCQLSFEN---SVGYLIGE------PNAGMK------QMFTFMN 315 (622)
T ss_pred EeCCCCCcCCCccCCCCeeecCcccccC---CCCCceEEEEeeC---hhHhhcCC------CChHHH------HHHHHHH
Confidence 99643211 12347899999999999 9999999999999 46789984 555554 6778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC-----CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 282 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTD 356 (600)
Q Consensus 282 ~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~-----~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~ 356 (600)
.+|+.+++.++|+++++++.+++|+++|+||+...+ ....||+++|.+|++|++|.+.+++++.+++++++.++.
T Consensus 316 ~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~ 395 (622)
T PTZ00456 316 TARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDI 395 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854321 134599999999999999999999999999999887764
Q ss_pred HHHHHhhCCCCC----hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHH-H
Q 007523 357 VTQRLQANDFST----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL-L 431 (600)
Q Consensus 357 ~~~~~~~~~~~~----~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~-~ 431 (600)
.... .+... .......++++|+++++.+.++++.|+|+|||+||++++++++++||++...+++|+|+++. .
T Consensus 396 ~~~~---~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~d 472 (622)
T PTZ00456 396 HAAA---KDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALD 472 (622)
T ss_pred cccc---cchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHH
Confidence 2100 01000 01234578899999999999999999999999999999999999999999999999999997 5
Q ss_pred HHHHHHH
Q 007523 432 QVARFLM 438 (600)
Q Consensus 432 ~ia~~ll 438 (600)
.++|.++
T Consensus 473 li~rkll 479 (622)
T PTZ00456 473 FIGRKVL 479 (622)
T ss_pred HHHHHhh
Confidence 8899887
No 36
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.4e-44 Score=381.64 Aligned_cols=349 Identities=19% Similarity=0.182 Sum_probs=276.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcc--ccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh---------
Q 007523 29 RHAFQVSDRIARLVASDPAFRKDNR--AMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS--------- 91 (600)
Q Consensus 29 ~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~--------- 91 (600)
+||.++++.+++|+.++........ ...+.... +..+.|+.+.+.||.+ + ||.+...
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~ 74 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGRE------DRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREE 74 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccch------HHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHH
Confidence 4688999999999988643221110 01111111 2346678899999887 2 4432211
Q ss_pred ---ccCcchhh-hhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 92 ---VDEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 92 ---~~~~~~~~-~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
.+.+.++. .+..+++..|..+|+++|+++||+++.+|+.++++++|||++|||+..+.|+|+.+ +++|+||
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~--- 149 (380)
T cd01152 75 MAAAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN--- 149 (380)
T ss_pred HHhcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe---
Confidence 12233332 22234566789999999999999999999999999999999999999999999987 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCC-CCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~-~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+||++ +..||+++|+|++.+++. ..++.+|+|| ...|||++.+.|.++| +++++.+.|+||
T Consensus 150 --G~K~~it~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~g-----~~~~~~l~f~~v 214 (380)
T cd01152 150 --GQKIWTSG-AHYADWAWLLVRTDPEAPKHRGISILLVD-------MDSPGVTVRPIRSING-----GEFFNEVFLDDV 214 (380)
T ss_pred --cEEEEEcC-ccccCEEEEEEEeCCCccCcCCeEEEEEe-------CCCCceEeeehhhccC-----CCCcceEEecCc
Confidence 99999999 899999999999764332 3578999999 6789999999998876 456899999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++|+. +|.+.. .+...+...|+.+++ .+..+++.+++|+++|.+||+ ||+++
T Consensus 215 ~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~~~----~~~~~~~~a~~~a~~r~~~g~-------~l~~~ 271 (380)
T cd01152 215 RVPDANRVGE------VNDGWK------VAMTTLNFERVSIGG----SAATFFELLLARLLLLTRDGR-------PLIDD 271 (380)
T ss_pred CcchhcccCC------CCchHH------HHHHHHHhcccccch----hhhHHHHHHHHHHHHHHhcCC-------CcccC
Confidence 9999999984 454433 445556667766554 444555677889999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|++|.+.+++++.+++.+++.+++ .. .....++++|+++++.+.++++.|+|++||.||+.+
T Consensus 272 ~~vq~~la~~~~~l~~a~~l~~~aa~~~~~-------~~-----~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~ 339 (380)
T cd01152 272 PLVRQRLARLEAEAEALRLLVFRLASALAA-------GK-----PPGAEASIAKLFGSELAQELAELALELLGTAALLRD 339 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC-----CCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 999999999999999999999999887652 11 122347899999999999999999999999999988
Q ss_pred --------CChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 407 --------SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 407 --------~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
+++++++||++...+++|++++++..+++.++
T Consensus 340 ~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~ 379 (380)
T cd01152 340 PAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLL 379 (380)
T ss_pred cccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999876
No 37
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-44 Score=386.21 Aligned_cols=290 Identities=20% Similarity=0.191 Sum_probs=251.5
Q ss_pred hhHHHHhcCCCHHHHHhHHHHHhccc-------------eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCc
Q 007523 104 MFVPAIKGQGTDEQHQKWLPLAYKME-------------IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 170 (600)
Q Consensus 104 l~~~~i~~~gt~eq~~~~l~~i~~g~-------------~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G 170 (600)
..+..+..+|+++|+++|||++.+|+ .++++++|||++|||+..++|+|+++. +|+|+|| |
T Consensus 139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G 212 (538)
T PRK11561 139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----G 212 (538)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----E
Confidence 44556677789999999999999997 467999999999999999999999852 6789999 9
Q ss_pred cccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCc
Q 007523 171 SKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 250 (600)
Q Consensus 171 ~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~ 250 (600)
.|||+|+ +.||+++|+||++ .|+++|+||...++ ...+||++.+.++|+| ++++++++|.|+|| .
T Consensus 213 ~K~fiSa--~~AD~~lVlArt~-----~Gls~FlVp~~~p~--g~~nGv~i~rl~~klG---~r~~~t~ev~f~dv---~ 277 (538)
T PRK11561 213 HKWFFSV--PQSDAHLVLAQAK-----GGLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASSEVEFQDA---I 277 (538)
T ss_pred EEEEEEc--hhhCEEEEEEEEC-----CceEEEEEECCCCC--CCCCceEEeccccccc---CCCCceeEEEECCH---H
Confidence 9999994 7899999999974 47999999932111 0123899999999999 99999999999999 4
Q ss_pred cccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHH
Q 007523 251 NQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 330 (600)
Q Consensus 251 ~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q 330 (600)
+++||. +|.++. .+...++..|+.+++.++|+++++++.+++|+++|+|||+ ||+++|.+|
T Consensus 278 ~~llG~------~g~G~~------~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-------~L~~~q~vq 338 (538)
T PRK11561 278 GWLLGE------EGEGIR------LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-------PLIEQPLMR 338 (538)
T ss_pred HHHCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------ccccCHHHH
Confidence 789984 666665 6777889999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChh
Q 007523 331 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 410 (600)
Q Consensus 331 ~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~ 410 (600)
++|++|.+.+++++++++++++.+++. .+..........++++|.++++.+.+++++|+|+|||+||+++++++
T Consensus 339 ~~LAdm~~~ieaar~l~~~aa~~~d~~------~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~le 412 (538)
T PRK11561 339 QVLSRMALQLEGQTALLFRLARAWDRR------ADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELP 412 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHH
Confidence 999999999999999999999888631 11000111345677899999999999999999999999999999999
Q ss_pred hhhcccccccccccchHHHHHHHHHHHHH
Q 007523 411 ELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 411 ~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++||++...+++|+++++...++|.+.+
T Consensus 413 rl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 413 RLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999998875
No 38
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=4.5e-43 Score=374.76 Aligned_cols=337 Identities=19% Similarity=0.224 Sum_probs=264.9
Q ss_pred HHHHHHHHHcccch-----h-hhhhhhh------c------cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccc
Q 007523 70 AYAWKRIIELRLSE-----E-ASMLRSS------V------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 129 (600)
Q Consensus 70 ~~~~~~~~~~G~~~-----~-g~~~~~~------~------~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 129 (600)
.++|+.+.+.||.+ + ||.+.+. . +.+.+ +.+| .....|..+|+++|+++|+|++.+|+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~ 116 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGE 116 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 56799999999987 2 4432111 1 11222 2333 34557888899999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCc----cEEEEEEEEecCC-CCCceEEEE
Q 007523 130 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITDG-QDHGVNGFI 204 (600)
Q Consensus 130 ~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A----~~~vV~A~~~~~~-~~~g~~~fl 204 (600)
.++|+++|||++|||+..++|+|++++ +|+|+|| |+|+|+|| +.+| ++++|+|++..++ +..++++|+
T Consensus 117 ~~~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~fl 189 (407)
T cd01153 117 WTGTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFL 189 (407)
T ss_pred eeEEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEE
Confidence 999999999999999999999999874 3589999 99999998 7776 5788999875322 335789999
Q ss_pred EeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHH
Q 007523 205 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 284 (600)
Q Consensus 205 V~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r 284 (600)
||.+.++ ...|||++.+.|+++| +++++++.|.|+||+|| +|+. +|.++. .....+...|
T Consensus 190 Vp~~~~~--~~~~gv~i~~~~~~~G---~r~t~s~~v~f~~v~Vp---~lg~------~~~g~~------~~~~~l~~~r 249 (407)
T cd01153 190 VPKFLDD--GERNGVTVARIEEKMG---LHGSPTCELVFDNAKGE---LIGE------EGMGLA------QMFAMMNGAR 249 (407)
T ss_pred EeccCcC--CCCCCeEeccchhccC---CCCCCeEEEEEcCEEEe---eeCC------CCccHH------HHHHHHHHHH
Confidence 9943111 1138999999999999 99999999999999999 6763 454443 5567788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007523 285 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGG-PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQA 363 (600)
Q Consensus 285 ~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~-~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 363 (600)
+.+++.++|+++++++.+++|+++|+|||++... +..++.++|.+|++|++|.+.+++++.+++++++.+++.......
T Consensus 250 ~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~ 329 (407)
T cd01153 250 LGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATE 329 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch
Confidence 9999999999999999999999999999993211 112389999999999999999999999999998877642100000
Q ss_pred CCCCC--hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHH-HHHH
Q 007523 364 NDFST--LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLL-QVAR 435 (600)
Q Consensus 364 ~~~~~--~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~-~ia~ 435 (600)
.+... .......++++|+++++.+.++++.++++|||.||+.+++++++|||++...+++|++++++. .+++
T Consensus 330 ~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~ 404 (407)
T cd01153 330 GEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404 (407)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence 00000 001245678899999999999999999999999999999999999999999999999998887 4443
No 39
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.3e-40 Score=352.79 Aligned_cols=327 Identities=17% Similarity=0.085 Sum_probs=257.2
Q ss_pred HHHHHHHHHcccch-----h-hhhhhhhc------------cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccc
Q 007523 70 AYAWKRIIELRLSE-----E-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 129 (600)
Q Consensus 70 ~~~~~~~~~~G~~~-----~-g~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 129 (600)
.+.|+.+.+.||.+ + ||.+.++. +.+.+ +.+|. .....|..+|+++|+++|++++.+|+
T Consensus 25 ~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~ 103 (377)
T cd01163 25 YEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGW 103 (377)
T ss_pred HHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCC
Confidence 56799999999987 1 44332111 11322 24554 33567888999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeecc
Q 007523 130 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 209 (600)
Q Consensus 130 ~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd 209 (600)
+++ .++|||++|+ +..+.|+++.+ +|+|+|| |+|.|||+ +..||+++|+|+++. .++.+|+||
T Consensus 104 ~~~-~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~----~~~~~~lV~--- 166 (377)
T cd01163 104 IFG-NAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTG-ALFSDWVTVSALDEE----GKLVFAAVP--- 166 (377)
T ss_pred eEE-EeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecC-CccceEEEEEEEcCC----CcEEEEEEe---
Confidence 765 5999999886 66777777766 7899999 99999999 899999999998532 346789999
Q ss_pred CCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHH
Q 007523 210 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 289 (600)
Q Consensus 210 ~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa 289 (600)
.+.|||++.+.|+++| +++++++.|.|+||+||.+++|+. .+.+.. ....+...|+.+++
T Consensus 167 ----~~~~Gv~i~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~lg~------~~~g~~-------~~~~~~~~~l~~aa 226 (377)
T cd01163 167 ----TDRPGITVVDDWDGFG---QRLTASGTVTFDNVRVEPDEVLPR------PNAPDR-------GTLLTAIYQLVLAA 226 (377)
T ss_pred ----CCCCceeecCCccccc---CccCCcceEEEeeEEECHHHccCC------Cccccc-------cccccHHHHHHHHH
Confidence 7789999999999999 999999999999999999999985 333321 01123356788999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-ccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 007523 290 DASCALSRAVCIATRYSAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 368 (600)
Q Consensus 290 ~~~g~~~~al~~a~~ya~~R~-qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (600)
.++|+++++++.+++|+++|+ +||.+... +++++|.+|++|++|.+.+++++++++.+++.+++........+...
T Consensus 227 ~~lG~a~~al~~~~~~~~~R~~~~g~~~~~---~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~ 303 (377)
T cd01163 227 VLAGIARAALDDAVAYVRSRTRPWIHSGAE---SARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEA 303 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCCcc---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 999999999999999999995 88873211 58899999999999999999999999999988875321100000101
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 369 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 369 ~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
..+....++++|.++++.+.++++.|+|+|||+||+++++++++|||++...++...+ .....++.+++
T Consensus 304 ~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~ 372 (377)
T cd01163 304 RGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhc
Confidence 1234566889999999999999999999999999999999999999999988777664 44455666654
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-38 Score=335.26 Aligned_cols=390 Identities=14% Similarity=0.059 Sum_probs=288.4
Q ss_pred hhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCC
Q 007523 100 LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 179 (600)
Q Consensus 100 ~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a 179 (600)
.|..++...|..+|+++||++|||++++|+.++++|+|| +.|||+.+++|+|+++. +|+|+|| |+|.|+ | +
T Consensus 104 ~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~-g 174 (520)
T PTZ00457 104 QHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-F-A 174 (520)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-c-C
Confidence 465566678888999999999999999999999999998 99999999999999863 4579999 999976 6 8
Q ss_pred CCccEEEEEEEEec----C-C--CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccc
Q 007523 180 KVSTHAVVYARLIT----D-G--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQ 252 (600)
Q Consensus 180 ~~A~~~vV~A~~~~----~-~--~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~ 252 (600)
..||+++|+|++.+ + + +..|+++|+|| .+.|||++++ +.|.|||| |.++
T Consensus 175 ~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~-------~dapGVtv~~---------------~eV~FddV--P~~~ 230 (520)
T PTZ00457 175 ASATHFLVLAKTLTQTAAEEGATEVSRNSFFICA-------KDAKGVSVNG---------------DSVVFENT--PAAD 230 (520)
T ss_pred chhcEEEEEeecCCcccccccccCcCceEEEEEE-------CCCCceEEec---------------CEEEECCC--CHHH
Confidence 99999999999753 1 1 13579999999 7889999862 47999997 9999
Q ss_pred cccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHH
Q 007523 253 MLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNR 332 (600)
Q Consensus 253 lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~r 332 (600)
+||. .|.++. .....+..+|+.+++.++|+++++++.+++|++ +|.+||+
T Consensus 231 vLG~------~g~G~~------~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~ 280 (520)
T PTZ00457 231 VVGV------VGEGFK------DAMITLFTEQYLYAASLLGIMKRVVQELRGSNA------------------EEGATDT 280 (520)
T ss_pred hCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHH
Confidence 9984 565554 566788899999999999999999999999974 3799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHH---HHHHHHHHHHHHHhcccccccCCCh
Q 007523 333 LFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT---TATADGIEECRKLCGGHGYLCSSGL 409 (600)
Q Consensus 333 La~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at---~~a~~~~~~~~q~~Gg~Gy~~~~~l 409 (600)
|++|.+.+++++++++.+++.+|+ + ..+.+..++++|+|++ +.+..++++++| .++++
T Consensus 281 LAdma~~ieAarsl~y~AA~~~D~-------g----~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~ 341 (520)
T PTZ00457 281 VASFACAMYAMESTLYALTANLDL-------P----TEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTL 341 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-------C----CcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccH
Confidence 999999999999999999998863 1 1346788999999999 888888888877 79999
Q ss_pred hhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCcccccc---ccchhHHhhhcCCccccCCCCCHHHHHHHH
Q 007523 410 PELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTY---MGRAEQLMQCHCGVQKAEDWLNPSAILEAF 486 (600)
Q Consensus 410 ~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (600)
++++||++.+.++||+|++|+ ..-+. .+ ..++-..... |..++.-........ ..+|..+..
T Consensus 342 E~~~rd~ri~~i~egs~~~l~----~~~~~-ag----~~~~g~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~l~~-- 406 (520)
T PTZ00457 342 EKCFANARLFLSMMESRDFLY----SSAVC-CG----VEDYGLFFQRASTLQMMQARTLRSLGVR----DRVPIKNLP-- 406 (520)
T ss_pred HHHHHHHHHHHHhhhHHHHHH----HHHHh-hc----ccchHHHHHHhhhhhhHHHHHHHhcCCC----CCCCcchhH--
Confidence 999999999999999999999 11111 00 1111101000 111110000000000 013321111
Q ss_pred HHHHHHHHHHHHHHHHhc-----CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCChHHHHHHHHHH
Q 007523 487 EARAIRMSVACAQNLSKF-----TNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQD----IPGKGVKPILEILCHI 557 (600)
Q Consensus 487 ~~r~~~~~~~~~~~l~~~-----~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~----~~~~~~~~vL~~L~~L 557 (600)
.+++++.+..++... ..++....+.+..|.+++++-+++|.+.+-.++.++. .+..+....|.+.++.
T Consensus 407 ---~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~ 483 (520)
T PTZ00457 407 ---DCSLIDEAVVAFGNAVEATFVRSGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIA 483 (520)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 122333333332221 1245667778889999999999999999988887652 2334444567888888
Q ss_pred HhHHHHHhchhHHHhcCCCCHHHHHHHHHHHH
Q 007523 558 YALHLVHKHLGDFVSTGCITAKQASLANEQLR 589 (600)
Q Consensus 558 yaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~ 589 (600)
-|-.++..+...+..+++.+-+..+.|-..+.
T Consensus 484 ~a~~rv~~~~~~~~~~~~~~~~~~~~~a~~~~ 515 (520)
T PTZ00457 484 MAVSRARQLSEESCNVGKTADDSYKRIALEMC 515 (520)
T ss_pred HHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Confidence 89999999998888777777555555554443
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=5.4e-36 Score=316.65 Aligned_cols=325 Identities=13% Similarity=0.039 Sum_probs=246.8
Q ss_pred HHHHHHHHHcccch-----h-hhhhhhh------------ccCcchh--hhhhhhhHHHHhcCCCHHHHHhHHHHHhccc
Q 007523 70 AYAWKRIIELRLSE-----E-ASMLRSS------------VDEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 129 (600)
Q Consensus 70 ~~~~~~~~~~G~~~-----~-g~~~~~~------------~~~~~~~--~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 129 (600)
.++|+.+.+.||.+ + ||.+.+. .+.+.++ ..+ .+....+..+++++|++.|++.. .+.
T Consensus 25 ~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 102 (370)
T cd01159 25 DEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIV-ATHSRMLAAFPPEAQEEVWGDGP-DTL 102 (370)
T ss_pred HHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH-HHHHHHHHhCCHHHHHHHhCCCC-Cce
Confidence 46788899999887 1 4432211 1122222 222 34556777889999988887632 111
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeecc
Q 007523 130 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 209 (600)
Q Consensus 130 ~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd 209 (600)
..+ ...+.|+|+++ +|+|+|| |+|.|||+ +..||+++|.|++..+++..++.+|+||
T Consensus 103 ~~g------------~~~~~t~A~~~--~~gy~ln-----G~K~~it~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~--- 159 (370)
T cd01159 103 LAG------------SYAPGGRAERV--DGGYRVS-----GTWPFASG-CDHADWILVGAIVEDDDGGPLPRAFVVP--- 159 (370)
T ss_pred EEe------------eecCCceeEEe--CCeEEEe-----ccccCccC-CCcCceeEeeeECCCCCCCCcceEEEEE---
Confidence 111 12457889887 7899999 99999999 8999999999997543334678999999
Q ss_pred CCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHH
Q 007523 210 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 289 (600)
Q Consensus 210 ~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa 289 (600)
.+ ||++.+.|+++| +++++++.|.|+||+||.+++|+........+.+... +. .....+...|+.+++
T Consensus 160 ----~~--Gv~~~~~~~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~--~~-~~~~~~~~~~~~~aa 227 (370)
T cd01159 160 ----RA--EYEIVDTWHVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGST--PV-YRMPLRQVFPLSFAA 227 (370)
T ss_pred ----hH--HCEEeccccccc---ccccCCCcEEEcceEcCccceecccccccCCCCCCCC--cc-ccCchHHHHHHHHHH
Confidence 44 999999999999 9999999999999999999999742100000111000 00 011234467889999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 007523 290 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTL 369 (600)
Q Consensus 290 ~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (600)
.++|+++++++.+++|+++|.||+.. + .||+++|.+|++|++|.+.+++++.+++.+++.+++... ..+. ..
T Consensus 228 ~~lG~a~~~l~~~~~~~~~R~~~~~~-g---~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~---~~~~-~~ 299 (370)
T cd01159 228 VSLGAAEGALAEFLELAGKRVRQYGA-A---VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHAL---AGGP-ID 299 (370)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCC-c---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CC
Confidence 99999999999999999999998421 0 189999999999999999999999999999998875321 1111 11
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccch-HHHHHHHHHHHHH
Q 007523 370 PEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 439 (600)
Q Consensus 370 ~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll~ 439 (600)
.+....++++|+++++.+.++++.++|+|||+||+.+++++++|||++...+++|++ ++++..+++.+|+
T Consensus 300 ~~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 300 VEERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 234456788999999999999999999999999999999999999999999999999 9999999998863
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.7e-36 Score=282.48 Aligned_cols=287 Identities=21% Similarity=0.301 Sum_probs=253.9
Q ss_pred HHhcCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCC-CCccEE
Q 007523 108 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG-KVSTHA 185 (600)
Q Consensus 108 ~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~-~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a-~~A~~~ 185 (600)
.|..||++||+.+||.++.+|++..|||||||. +.||..++++.-+++ ++.|||| |+|||+||.+ +-|.++
T Consensus 91 vl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sga~~PkCrv~ 163 (392)
T KOG1469|consen 91 VLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISGAGDPKCRIA 163 (392)
T ss_pred ehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecCCCCCceEEE
Confidence 478899999999999999999999999999998 678999999999998 8999999 9999999832 558899
Q ss_pred EEEEEEecCC--CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcc--cceEEecceecCcccccccccccc
Q 007523 186 VVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVT 261 (600)
Q Consensus 186 vV~A~~~~~~--~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~--~~~v~f~~v~VP~~~lL~~~~~v~ 261 (600)
+++.+++... ++...++.||| -.+|||.|.......| +...+ ..+|+|+|||||..|+|-.
T Consensus 164 i~mGkt~~~~~~rhkQqSmiLVp-------M~TpGvkiiRpltVfG---~~DapgGH~Ei~F~~VrVP~~NmlLG----- 228 (392)
T KOG1469|consen 164 IFMGKTDNTSASRHKQQSMILVP-------MNTPGVKIIRPLTVFG---YTDAPGGHFEIHFENVRVPATNMLLG----- 228 (392)
T ss_pred EEecccCCCccchhhcccEEEEe-------cCCCCeeEeeeeeeec---cccCCCCcceEEEEEEEeeccceeec-----
Confidence 9999987652 34556789999 6789999998888888 65443 5799999999999999863
Q ss_pred CCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHH
Q 007523 262 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAY 341 (600)
Q Consensus 262 ~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~ 341 (600)
+|.++. +..+-+..+|+..|.-.+|.+++|+++.-+-+..|..||+ ++..+.++.+-+|..-..++
T Consensus 229 -eGrGFE------IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-------~l~q~~s~~~diA~sRveiE 294 (392)
T KOG1469|consen 229 -EGRGFE------IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-------KLVQHGSVAHDIAESRVEIE 294 (392)
T ss_pred -CCCcce------eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhhcchHHHHHHHHHhHhh
Confidence 677765 5556677899999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccc
Q 007523 342 AFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACT 421 (600)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~ 421 (600)
.+|.++.+++..+|.. + ...+....+|.|+.+...+..+++.++|.|||.|.+.+.++.++|.-++...+
T Consensus 295 qaRLLvLkAAh~mD~~------G----~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lri 364 (392)
T KOG1469|consen 295 QARLLVLKAAHSMDTL------G----NKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRI 364 (392)
T ss_pred hhhhhhhhhhhhhhhh------c----chhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEe
Confidence 9999999998887642 1 13455668999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHH
Q 007523 422 YEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 422 ~~G~~~vl~~~ia~~ll~~ 440 (600)
..|..++++..+++.-++.
T Consensus 365 adgPd~vhL~ai~~le~~~ 383 (392)
T KOG1469|consen 365 ADGPDEVHLSAIAKLELRD 383 (392)
T ss_pred ccCCCccchhhhhhhhHHH
Confidence 9999999999999877654
No 43
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=99.89 E-value=1.8e-22 Score=191.73 Aligned_cols=123 Identities=31% Similarity=0.535 Sum_probs=116.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCChHH
Q 007523 475 DWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQ-QDIPGKGVKP 549 (600)
Q Consensus 475 ~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~-~~~~~~~~~~ 549 (600)
||.||++++++|++|+++++..+++++++ +.+.+++||+++++++++|+||+++++++.|+++|+ . +.++++++
T Consensus 1 d~~~~~~l~~a~~~r~~~ll~~~~~~l~~~~~~g~~~~~awn~~~~~l~~~a~Ah~e~~i~~~f~~~i~~~-~~~~~~~~ 79 (187)
T PF01756_consen 1 DLLDPEFLLQAFEHRAARLLQRAAQKLQKLMKSGKSPFEAWNDCSVQLVRAAKAHAERYILEQFIEAIQSS-CADPEVRQ 79 (187)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSG--SSTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCChHHHH
Confidence 57899999999999999999999999765 567889999999999999999999999999999999 5 89999999
Q ss_pred HHHHHHHHHhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007523 550 ILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 550 vL~~L~~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~ 598 (600)
||.+||.||+|+.|++++|+|+++||||++|++.|++++.+||.+|||+
T Consensus 80 vL~~L~~Lyal~~i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~ 128 (187)
T PF01756_consen 80 VLRQLCQLYALSIIEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPN 128 (187)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999997
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.86 E-value=2.9e-20 Score=199.54 Aligned_cols=248 Identities=8% Similarity=0.061 Sum_probs=187.1
Q ss_pred hcCCCHH--HHHhHHHHHhccceeeEEeccCCCC-CC----CCCCCce--EEEEeCCCCeEEEecCCCCccccccCCCCC
Q 007523 110 KGQGTDE--QHQKWLPLAYKMEIIGCYAQTELGH-GS----NVQGLET--TATFDPQTDEFVIHSPTLTSSKWWPGGLGK 180 (600)
Q Consensus 110 ~~~gt~e--q~~~~l~~i~~g~~~~~~a~tE~~~-Gs----d~~~~~T--tA~~d~~~~~~vLntp~~~G~K~~v~~~a~ 180 (600)
..+|++- --.+|+..+....+..+.++|.|-. -| ....... ..+ ++++|||||| |.|.|+|+ +
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vv-e~~~dGiVV~-----GaK~~~T~-~- 190 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVV-EQTDKGVIVR-----GARMTATF-P- 190 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEE-EEcCCCEEEe-----CHHHhhhh-c-
Confidence 4455443 2357999999999999999998852 12 1111111 222 2337899999 99999998 7
Q ss_pred CccEEEEEEEEecCCCC-Cc--eEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCc-----------ccceEEecce
Q 007523 181 VSTHAVVYARLITDGQD-HG--VNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM-----------DNGVLRFEHV 246 (600)
Q Consensus 181 ~A~~~vV~A~~~~~~~~-~g--~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~-----------~~~~v~f~~v 246 (600)
.||.++|++++...+++ .+ ..+|+|| .++|||++.....++| .++. ..+.|.||||
T Consensus 191 ~ad~~~V~~~~~~~~~~~~~~ya~~F~VP-------~dtpGl~~i~r~~~~~---~~~~~D~plssrfde~da~vvFDdV 260 (477)
T TIGR02309 191 IADEILIFPSTVLKAGAEKDPYALAFAIP-------TNTPGLHFVCREALDG---GDSPFDHPLSSRFEEMDALVIFDDV 260 (477)
T ss_pred ccceEEEeccCCCCCccCCCCeEEEEEee-------CCCCceEEEeCCccCC---CCCcccCccccccCCCeEEEEeCce
Confidence 99999999987654332 33 5799999 8999999998888888 6665 5689999999
Q ss_pred ecCcccc--ccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcccc
Q 007523 247 RIPRNQM--LMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 324 (600)
Q Consensus 247 ~VP~~~l--L~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~ 324 (600)
+||.+++ +|.... .|.++. .. ..++..+..++|.+..+++.++.|+.. .+||. ++.
T Consensus 261 ~VPwe~VF~~g~~e~---a~~~f~---------~~--~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~-------gi~ 318 (477)
T TIGR02309 261 LVPWERIFILGDVEL---CNNAYA---------AT--GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI-------GAD 318 (477)
T ss_pred eccHHHhhhcCCHHH---HHHHHH---------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-------Ccc
Confidence 9999999 663100 022211 11 123556788899999999999999999 99999 899
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 007523 325 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 404 (600)
Q Consensus 325 ~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~ 404 (600)
++|.+|++|++|++.+++++++.+.+.+..+. ............++++|.++++...++. +|+|.+||.|+.
T Consensus 319 ~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~-------~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 319 GFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKE-------NAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------CCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 99999999999999999999999988765431 1111111124568999999999999995 999999999997
Q ss_pred c
Q 007523 405 C 405 (600)
Q Consensus 405 ~ 405 (600)
.
T Consensus 391 ~ 391 (477)
T TIGR02309 391 T 391 (477)
T ss_pred e
Confidence 5
No 45
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.84 E-value=5.6e-20 Score=168.63 Aligned_cols=145 Identities=27% Similarity=0.225 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 275 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 354 (600)
Q Consensus 275 ~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~ 354 (600)
++...+..+|+.+++.++|.++.+++.+++|++.|++||+ |+.++|.++++|+++.+.+++++++++++...+
T Consensus 6 ~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~ 78 (150)
T PF00441_consen 6 VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAARRL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhcccccccccc
Confidence 6777899999999999999999999999999999999998 999999999999999999999999999998876
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHH
Q 007523 355 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA 434 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia 434 (600)
+. +. .....++++|.++++.+.++++.|++++||.||..+++++++++|++...+++|++++++.+|+
T Consensus 79 ~~-------~~-----~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia 146 (150)
T PF00441_consen 79 DA-------GQ-----NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIA 146 (150)
T ss_dssp HT-------TS-----STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHH
T ss_pred cc-------cc-----ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHH
Confidence 52 11 1266788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007523 435 RFLM 438 (600)
Q Consensus 435 ~~ll 438 (600)
+.+|
T Consensus 147 ~~~l 150 (150)
T PF00441_consen 147 RRLL 150 (150)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9886
No 46
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=99.54 E-value=3.2e-14 Score=126.03 Aligned_cols=115 Identities=39% Similarity=0.636 Sum_probs=92.6
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCC-CccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h----hh
Q 007523 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRK-DNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E----AS 86 (600)
Q Consensus 17 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~----g~ 86 (600)
|+++|+.+|+|++++.+.|+++.+++.+||+|.. .+...+++++.++.+.+....+++.+.+.+|.. + +.
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKPPDRYFLSREERYERALRKARRLIKLLKQLGWDDNQDPDDAFMIGL 80 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHH--
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 7999999999999999999999999999999998 667889999999999999999999999999853 1 12
Q ss_pred hhhhhccCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhcccee
Q 007523 87 MLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 131 (600)
Q Consensus 87 ~~~~~~~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~ 131 (600)
....+++++.|+.+|++||.++|...||+||+++|||++.+.++|
T Consensus 81 ~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 81 LMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 335667788899999999999999999999999999999998875
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.42 E-value=2.2e-13 Score=100.31 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.2
Q ss_pred EEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEE
Q 007523 133 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 191 (600)
Q Consensus 133 ~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~ 191 (600)
|||+|||++|+|+..++|+|+++ +++|+|| |.|+||++ ++.||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEET-TTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECC-cCccCEEEEEEEE
Confidence 78999999999999999999999 7889999 99999999 9999999999997
No 48
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.37 E-value=5.4e-12 Score=113.37 Aligned_cols=130 Identities=17% Similarity=0.049 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--cCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007523 285 QTIVADASCALSRAVCIATRYSAVRRQ--FGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 362 (600)
Q Consensus 285 ~~~aa~~~g~~~~al~~a~~ya~~R~q--fg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 362 (600)
+.+++.++|+++++++.+++|++.|.. .+. ++.+.|.+|.+++++.+.+++++...+.++..+++....
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~-------~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~-- 71 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA-------PLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADA-- 71 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-------BCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 357899999999999999999998887 333 899999999999999999999999999998887654332
Q ss_pred hCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccc
Q 007523 363 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGD 425 (600)
Q Consensus 363 ~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~ 425 (600)
++.. .++........|.++++.+.++++.+++++||.|+...++++|+|||+.....+...
T Consensus 72 -g~~~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 72 -GEEL-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp -T-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred -cCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 2221 245566778889999999999999999999999999999999999999988776554
No 49
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.62 E-value=3.8e-06 Score=90.65 Aligned_cols=239 Identities=11% Similarity=0.093 Sum_probs=136.6
Q ss_pred HHhHHHHHhccceeeEEeccCCCC-CC----CCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEE-EEEE
Q 007523 118 HQKWLPLAYKMEIIGCYAQTELGH-GS----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV-YARL 191 (600)
Q Consensus 118 ~~~~l~~i~~g~~~~~~a~tE~~~-Gs----d~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV-~A~~ 191 (600)
-.+|+..+....+..+.|+|.|-. -| ....+-...+. +.++|.||+ |.|...|+ ++.+|..+| +...
T Consensus 138 ~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~-a~~a~ei~V~~~~~ 210 (519)
T TIGR02310 138 ARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATN-SALTHYNFIGFGSA 210 (519)
T ss_pred HHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcc-cchhcceeeccCcc
Confidence 467999999999999999998742 12 11111122222 226789999 99999998 899998888 4443
Q ss_pred e--cCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcc----C-CCCcC-------CcccceEEecceecCcccccccc
Q 007523 192 I--TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF----G-NGAYN-------TMDNGVLRFEHVRIPRNQMLMRV 257 (600)
Q Consensus 192 ~--~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~----G-~~~~~-------~~~~~~v~f~~v~VP~~~lL~~~ 257 (600)
. .+.++.. ..|.|| .++|||++.-....- + +..+. +-.-+-|.||||+||.++++--
T Consensus 211 ~~~~~d~dyA-vaFavP-------~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~- 281 (519)
T TIGR02310 211 QIIGDNDDFA-LMFIAP-------MDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIY- 281 (519)
T ss_pred cccCCCCCeE-EEEEeE-------cCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceec-
Confidence 1 1223333 479999 899999886332211 0 00011 1113679999999999999841
Q ss_pred ccccCCCcee-ecccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHH
Q 007523 258 SQVTREGKYV-QSNVPRQLLYGTMVYVRQT-IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFP 335 (600)
Q Consensus 258 ~~v~~~g~~~-~~~~~~~~~~~~l~~~r~~-~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~ 335 (600)
+++..-..+. ..... ..+..-...|.. .+-..+|++..+.+ + -| +..++.+|.+|++
T Consensus 282 gd~e~~~~~~~~~~~~--~~~~~q~~~r~~~k~dfl~G~a~~~ae----~------~G---------~~~~~hVqekl~E 340 (519)
T TIGR02310 282 RDFERCRTWAQYGGFA--RLFPMQACTRLAVKLDFITGLLHKALQ----C------TG---------VLEFRGVQAQMGE 340 (519)
T ss_pred CCHHHHHhHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH----H------hC---------cccchHHHHHHHH
Confidence 1110000011 00000 000000011111 11122333333222 2 12 4578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007523 336 LLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 400 (600)
Q Consensus 336 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg 400 (600)
+++..+.+++....+...-. .......-.-...+..+|.+.++..-++.+.+.+.+||
T Consensus 341 li~~~E~~~a~~~Aa~~~~~-------~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 341 VVAWRNLFWTLTDAMAGSAY-------QWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred HHHHHHHHHHHHHHHHhcCc-------cCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 99999998877665532110 11111111223445678999999999999988866664
No 50
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.52 E-value=1e-05 Score=84.53 Aligned_cols=246 Identities=15% Similarity=0.145 Sum_probs=143.4
Q ss_pred CCCHH--HHHhHHHHHhccceeeEEeccCCCC-CC----CCC--CCceEEEEeCCCCeEEEecCCCCccccccCCCCCCc
Q 007523 112 QGTDE--QHQKWLPLAYKMEIIGCYAQTELGH-GS----NVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 182 (600)
Q Consensus 112 ~gt~e--q~~~~l~~i~~g~~~~~~a~tE~~~-Gs----d~~--~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A 182 (600)
+|++- --.+|+..+.......+-|+|.|-. .| -.. .+-...+. ...+|.|++ |.|..+|+ +..+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVve-e~~dGIVVr-----GAK~~aT~-~a~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVE-ETEDGIVVR-----GAKALATG-SALT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEE-EecCceEEE-----ChHHHhcc-cccc
Confidence 45543 2357999999999999999998742 11 111 12222222 225789999 99999999 8999
Q ss_pred cEEEEE-EEEe-cCCCCCceEEEEEeeccCCCCCCCCCeEEeccCC-ccCCCCcCCc------------ccceEEeccee
Q 007523 183 THAVVY-ARLI-TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGM-KFGNGAYNTM------------DNGVLRFEHVR 247 (600)
Q Consensus 183 ~~~vV~-A~~~-~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~-~~G~~~~~~~------------~~~~v~f~~v~ 247 (600)
|..+|+ .+.- .+.++. -..|.|| .++|||.+.-... ..| .++.+. .-+.|.||||+
T Consensus 198 dei~V~Pt~~~~~~d~df-Av~FaiP-------~dt~GvK~i~r~s~~~~-~~~~~g~fd~plssrfde~dailVfDdVf 268 (493)
T COG2368 198 DEIFVLPTRSMQEDDKDF-AVAFAIP-------MDTEGVKFICRRSYELG-RGAEGGPFDYPLSSRFDENDAILVFDDVF 268 (493)
T ss_pred ceEEEeeccccCCCCCce-EEEEEcc-------cCCCceEEEecCcchhh-cccCCCCCCCccccccccCceEEEecccc
Confidence 999988 3322 122233 3479999 8899987743321 111 001111 12459999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccccCCCCCCCCccc
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGT-MVYVRQTIVADASCALS---RAVCIATRYSAVRRQFGSKNGGPETQV 323 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~-l~~~r~~~aa~~~g~~~---~al~~a~~ya~~R~qfg~~~~~~e~~i 323 (600)
||.++++- +.++..--.. ..... ..+.|...+..-.+-+. .+....+++. -+
T Consensus 269 VPWERVf~-y~d~~~~~~~--------~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~~---------------Gv 324 (493)
T COG2368 269 VPWERVFI-YRDLERAYAW--------YAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAETN---------------GV 324 (493)
T ss_pred cchhheee-eccHHHHHHH--------HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh---------------Cc
Confidence 99999984 1111100000 01011 11122211211111111 1112222221 35
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Q 007523 324 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 403 (600)
Q Consensus 324 ~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy 403 (600)
.+|+.+|.+|++|++-.+.+.++...++.... .......-.-...+...|.+++..-.++.+.+.++.||.-.
T Consensus 325 ~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~-------~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i 397 (493)
T COG2368 325 EEFRHIQEKLGEMIALLELMWALSDAAAEEAQ-------KNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGII 397 (493)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCcee
Confidence 68999999999999999988877766543221 11111112234567789999999999999999999887543
Q ss_pred c
Q 007523 404 L 404 (600)
Q Consensus 404 ~ 404 (600)
+
T Consensus 398 ~ 398 (493)
T COG2368 398 T 398 (493)
T ss_pred e
Confidence 3
No 51
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.32 E-value=4.3e-07 Score=78.66 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc---------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV--------- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~--------- 92 (600)
||++.++++++++|+.++-. +....+.....+..++|+.+.+.||.+ + ||.+....
T Consensus 1 t~~~~~l~~~~~~~~~~~~~---------~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l 71 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIA---------PHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEEL 71 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTH---------HHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHch---------HHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhh
Confidence 57899999999999976220 011222122234567899999999987 1 44322111
Q ss_pred ---cCc--chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccc
Q 007523 93 ---DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 129 (600)
Q Consensus 93 ---~~~--~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~ 129 (600)
+.+ ..+.+|.++++.+|..+|++||+++|||++++||
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 72 ARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 112 2356777788889999999999999999999986
No 52
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.35 E-value=0.0014 Score=64.90 Aligned_cols=123 Identities=14% Similarity=0.198 Sum_probs=74.0
Q ss_pred HHHhHHHHHhccceeeEEeccCCCC--CCCC-C---CCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEE
Q 007523 117 QHQKWLPLAYKMEIIGCYAQTELGH--GSNV-Q---GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYAR 190 (600)
Q Consensus 117 q~~~~l~~i~~g~~~~~~a~tE~~~--Gsd~-~---~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~ 190 (600)
--.+|+..+....+..+.|++.|-. +... + .+-...+.. ..+|.||+ |.|...|+ ++.||.++|+--
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~-a~~adei~V~p~ 196 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATG-APYADEILVFPT 196 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEET-GCCSSEEEE--S
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcC-CcccccEEEeec
Confidence 3467999999999999999999852 1111 1 122222222 25899999 99999998 999999999753
Q ss_pred Eec--CCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCC--CcC--Cc-----ccceEEecceecCccccc
Q 007523 191 LIT--DGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG--AYN--TM-----DNGVLRFEHVRIPRNQML 254 (600)
Q Consensus 191 ~~~--~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~--~~~--~~-----~~~~v~f~~v~VP~~~lL 254 (600)
..- +.+++ -.+|.|| .++||+++.-........ .+. .+ .-+.|.||||+||.++++
T Consensus 197 ~~~~~~d~dy-Av~FavP-------~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 197 RAMRPGDEDY-AVAFAVP-------MNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSTTCCGGG--EEEEEE-------TT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred cCCCCCCCce-EEEEEcc-------CCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 321 12223 3489999 899999886543322200 011 00 125799999999999875
No 53
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=86.66 E-value=9.7 Score=36.56 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=53.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007523 323 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 402 (600)
Q Consensus 323 i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~G 402 (600)
+..+|.||.+|++++...+.++++...+.... ..........-......+|.+.++...++++.+++++||.=
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a-------~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEA-------EPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT--------EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 56799999999999999999988776553211 11111112223445678999999999999999999999865
Q ss_pred cc
Q 007523 403 YL 404 (600)
Q Consensus 403 y~ 404 (600)
.+
T Consensus 117 i~ 118 (205)
T PF03241_consen 117 IT 118 (205)
T ss_dssp TC
T ss_pred ee
Confidence 44
No 54
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=84.31 E-value=8.2 Score=42.61 Aligned_cols=71 Identities=18% Similarity=0.074 Sum_probs=53.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007523 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 401 (600)
Q Consensus 322 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~ 401 (600)
.|.+-|.+..||+++.+.+||+...+.++.....+ +- +........+++||.+...++-..+-+++..
T Consensus 432 ~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~-------~~----~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~- 499 (520)
T PTZ00457 432 QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSK-------GL----PSAKVEGELASAFIAMAVSRARQLSEESCNV- 499 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC----CchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 78999999999999999999999887777554431 11 1222234578999999999998888888876
Q ss_pred ccc
Q 007523 402 GYL 404 (600)
Q Consensus 402 Gy~ 404 (600)
++.
T Consensus 500 ~~~ 502 (520)
T PTZ00457 500 GKT 502 (520)
T ss_pred Ccc
Confidence 554
No 55
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=77.45 E-value=32 Score=37.85 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007523 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 400 (600)
Q Consensus 322 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg 400 (600)
-|.+-|.+-+|||+.++.+|++-+...++.+.+.. .++......+.++++|++...++...+-++-++
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i-----------gl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI-----------GLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999888888766541 223455667888999999999988888887777
No 56
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.85 E-value=1.6e+02 Score=22.93 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=27.9
Q ss_pred HHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 007523 563 VHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 597 (600)
Q Consensus 563 I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~ 597 (600)
.-+..|...+.|-++..|.-...+.+...+..|+|
T Consensus 45 ~m~~iG~~w~~~~~~v~~e~~as~~~~~~l~~l~p 79 (79)
T PF02607_consen 45 AMEEIGELWEEGEISVAQEHLASEAMRAALSILKP 79 (79)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhCC
Confidence 33467888899999999988888888888888876
No 57
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=22.76 E-value=47 Score=34.94 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCChhhhhccccccc--ccccchHHHHHHHHHHHHHHHHHhcCCCCCc
Q 007523 383 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC--TYEGDNIVLLLQVARFLMKTVSQLGYGNMPV 451 (600)
Q Consensus 383 at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~--~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~ 451 (600)
|+..|.++.-+.+|+||+|||+- ++++....--+ -|.|+ -.-+.++...+++..++.-....|+
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYLi----~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~~~v 219 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYLL----SQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGADFPV 219 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchHH----HHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCCceE
Confidence 45556667777889999999984 44444333222 36666 6677788888888887654433333
No 58
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=21.79 E-value=7e+02 Score=29.29 Aligned_cols=98 Identities=21% Similarity=0.179 Sum_probs=55.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007523 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 401 (600)
Q Consensus 322 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~ 401 (600)
.|..-|.+..||+|+++.+|++.+...+.- + .+. +. .. ...+.+.+.++..++.+.+-+.
T Consensus 562 ~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~-------~~~----~~--~~----~~l~~~~~~~~~~~~~~~~~~~ 621 (777)
T PRK09463 562 SLKRRERLSARLGDILSQLYLASAVLKRYE---D-------EGR----PE--AD----LPLVHWAVQDALYQAEQALDGL 621 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-------CCC----ch--hH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 577778889999999999999877665542 1 011 11 11 2334444444444444433221
Q ss_pred -ccccCCChhhhhcccc--cccccccchHHHHHHHHHHHHH
Q 007523 402 -GYLCSSGLPELFAVYV--PACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 402 -Gy~~~~~l~~~~rd~~--~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
.=...-.+..++|-.. ....+.+.++.+..++|+.++.
T Consensus 622 ~~n~p~~~~~~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 622 LRNFPNRVVAGLLRVLVFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHcCCchHHHHHHHHeeeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 1111112334444332 1345778889999999998874
No 59
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=20.16 E-value=2.5e+02 Score=25.21 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=21.3
Q ss_pred CCCceEEEEEeeccCCCCCCCCCeEEeccCC
Q 007523 196 QDHGVNGFIVQLRSLEDHSPLPGITIGDIGM 226 (600)
Q Consensus 196 ~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~ 226 (600)
...-+.+-|+|++ .++.+.|.|+|....+
T Consensus 87 ~~~~~~l~LIPL~--~G~L~lP~V~i~~~~~ 115 (147)
T PF12584_consen 87 SEHEIPLTLIPLR--AGYLPLPKVEIRPYDP 115 (147)
T ss_pred CeEEEEEEEEecc--cceecCCEEEEEeccC
Confidence 3345678899987 3557889999988763
Done!