Query 007523
Match_columns 600
No_of_seqs 376 out of 2512
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ddh_A Acyl-COA oxidase; beta 100.0 1E-96 3E-101 826.7 61.6 591 1-598 1-602 (661)
2 1w07_A Acyl-COA oxidase; oxido 100.0 1.6E-95 6E-100 818.3 64.6 596 1-598 1-599 (659)
3 2z1q_A Acyl-COA dehydrogenase; 100.0 4.4E-59 1.5E-63 516.8 40.4 470 28-566 29-524 (577)
4 3owa_A Acyl-COA dehydrogenase; 100.0 5.9E-58 2E-62 507.4 44.3 499 28-586 34-565 (597)
5 2jif_A Short/branched chain sp 100.0 7.4E-55 2.5E-59 464.1 31.0 356 26-440 28-403 (404)
6 2uxw_A VERY-long-chain specifi 100.0 2.9E-53 9.7E-58 471.2 42.4 487 33-580 56-584 (607)
7 3pfd_A Acyl-COA dehydrogenase; 100.0 3.9E-55 1.3E-59 465.0 25.8 363 17-439 11-393 (393)
8 2d29_A Acyl-COA dehydrogenase; 100.0 3E-54 1E-58 457.4 32.3 355 27-439 7-385 (387)
9 1ukw_A Acyl-COA dehydrogenase; 100.0 2.2E-54 7.4E-59 457.2 30.0 353 28-439 6-378 (379)
10 1buc_A Butyryl-COA dehydrogena 100.0 3.9E-54 1.3E-58 456.0 31.0 355 27-438 5-382 (383)
11 2vig_A Short-chain specific ac 100.0 3.9E-54 1.3E-58 457.0 30.4 358 27-442 6-383 (391)
12 1ivh_A Isovaleryl-COA dehydrog 100.0 2.7E-54 9.3E-59 458.7 28.8 357 27-441 13-393 (394)
13 1egd_A Medium chain acyl-COA d 100.0 5.5E-54 1.9E-58 456.6 30.6 357 27-441 16-394 (396)
14 2dvl_A Acyl-COA dehydrogenase; 100.0 6.1E-54 2.1E-58 452.7 30.1 348 28-438 4-371 (372)
15 3r7k_A Probable acyl COA dehyd 100.0 5E-54 1.7E-58 457.9 29.2 352 27-437 29-401 (403)
16 3p4t_A Putative acyl-COA dehyd 100.0 6E-54 2.1E-58 457.2 29.8 361 17-437 18-399 (403)
17 2pg0_A Acyl-COA dehydrogenase; 100.0 1.9E-53 6.5E-58 450.9 32.0 353 27-437 10-383 (385)
18 1rx0_A Acyl-COA dehydrogenase 100.0 2E-53 6.8E-58 451.8 31.6 354 27-439 19-392 (393)
19 4hr3_A Putative acyl-COA dehyd 100.0 3.3E-53 1.1E-57 453.6 30.8 360 26-441 8-412 (415)
20 3ii9_A Glutaryl-COA dehydrogen 100.0 4.2E-54 1.4E-58 457.5 23.7 358 20-439 14-391 (396)
21 2ix5_A Acyl-coenzyme A oxidase 100.0 1.7E-53 5.8E-58 457.0 28.5 352 26-439 54-424 (436)
22 3sf6_A Glutaryl-COA dehydrogen 100.0 2.9E-53 9.9E-58 452.0 30.0 350 26-439 29-398 (403)
23 3swo_A Glutaryl-COA dehydrogen 100.0 6.9E-54 2.4E-58 456.3 25.0 350 26-439 25-393 (399)
24 2wbi_A Acyl-COA dehydrogenase 100.0 9.8E-53 3.4E-57 451.2 33.8 375 16-443 14-422 (428)
25 3nf4_A Acyl-COA dehydrogenase; 100.0 1.2E-53 4.2E-58 452.8 25.8 352 27-439 16-387 (387)
26 2eba_A Putative glutaryl-COA d 100.0 9.6E-53 3.3E-57 445.5 29.5 350 27-439 11-381 (385)
27 1siq_A GCD, glutaryl-COA dehyd 100.0 6E-52 2E-56 440.5 28.9 353 26-439 13-384 (392)
28 3mpi_A Glutaryl-COA dehydrogen 100.0 2.4E-52 8.1E-57 444.4 25.3 352 27-437 5-382 (397)
29 1r2j_A Protein FKBI; polyketid 100.0 7.1E-52 2.4E-56 435.8 24.4 318 68-439 25-363 (366)
30 3mkh_A Nitroalkane oxidase; ox 100.0 1.7E-50 5.8E-55 435.6 29.6 368 27-440 7-417 (438)
31 2c12_A Nitroalkane oxidase; ox 100.0 2.6E-48 8.8E-53 418.6 31.7 363 27-438 6-418 (439)
32 3mxl_A Nitrososynthase; flavin 100.0 9.9E-48 3.4E-52 408.7 22.2 357 27-439 9-393 (395)
33 3m9v_A FAD-dependent oxidoredu 100.0 6.7E-46 2.3E-50 399.8 24.9 365 17-439 12-404 (439)
34 2or0_A Hydroxylase; APC7385, r 100.0 8.4E-46 2.9E-50 396.0 23.7 351 28-439 19-401 (414)
35 2rfq_A 3-HSA hydroxylase, oxyg 100.0 1.9E-44 6.6E-49 383.2 27.0 350 33-439 11-386 (394)
36 3djl_A Protein AIDB; alpha hel 100.0 1.5E-44 5.1E-49 395.3 26.1 322 70-439 89-441 (541)
37 2jbr_A P-hydroxyphenylacetate 100.0 1.1E-44 3.7E-49 388.3 22.9 351 33-439 39-414 (422)
38 2yyk_A 4-hydroxyphenylacetate- 100.0 8.6E-34 2.9E-38 306.2 23.5 272 114-437 122-422 (481)
39 1u8v_A Gamma-aminobutyrate met 100.0 6.5E-34 2.2E-38 307.5 22.3 274 108-431 119-420 (490)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 3.2E-29 1.1E-33 270.0 25.2 281 112-438 127-431 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.9 5E-22 1.7E-26 214.4 24.5 254 116-415 134-400 (517)
42 3owa_A Acyl-COA dehydrogenase; 89.2 2.4 8.3E-05 46.3 12.2 120 299-439 471-591 (597)
43 2uxw_A VERY-long-chain specifi 55.1 91 0.0031 33.8 12.5 67 322-399 509-575 (607)
44 2k6o_A Cathelicidin antimicrob 21.4 1.1E+02 0.0039 19.4 3.4 23 578-600 14-36 (37)
No 1
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=1e-96 Score=826.67 Aligned_cols=591 Identities=43% Similarity=0.737 Sum_probs=511.0
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcc
Q 007523 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (600)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 80 (600)
|+| +|++||++++||+++|+.+|+|++++.++|+++++++.++|.|...+...+++++.++...++...+.+.+.++|
T Consensus 1 ~~~--~l~~er~~~~f~~~~l~~~l~g~~~~~~~r~~~~~~l~~~p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 78 (661)
T 2ddh_A 1 MNP--DLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYG 78 (661)
T ss_dssp CCH--HHHHHHHHCSSCHHHHHHHHHTSHHHHHHHHHHHHHHHTCGGGCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCh--HHHHHHhhCCCCHHHHHHHHCCChhHHHHHHHHHHHHhcCcccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566 899999999999999999999999999999999999999999886555568888888888888788777777888
Q ss_pred cch-h-hhhhhhhccC--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeC
Q 007523 81 LSE-E-ASMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 156 (600)
Q Consensus 81 ~~~-~-g~~~~~~~~~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~ 156 (600)
+.+ . ......+++. +.++.+|+.+++++|..+||++|+++|||++++|++++|||+|||+||||+.+++|+|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~ 158 (661)
T 2ddh_A 79 ISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDP 158 (661)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred CCCchHHHHHHHHhccchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcC
Confidence 765 2 2222233332 57788998899999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCc
Q 007523 157 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM 236 (600)
Q Consensus 157 ~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~ 236 (600)
++|+|+||||+++|+|+||||++.+||+++|+|+++++++++|+++|+||+||+++|.+.|||+|+++|+++| ++++
T Consensus 159 ~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~G---l~g~ 235 (661)
T 2ddh_A 159 KTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG---YEEM 235 (661)
T ss_dssp TTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSS---CTTC
T ss_pred CCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCccccc---CCCC
Confidence 8899999999999999999986789999999999987766789999999999999999999999999999999 9999
Q ss_pred ccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007523 237 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN 316 (600)
Q Consensus 237 ~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~ 316 (600)
++++|.|+||+||++++|+++++|+++|.+..+.... ..+..|..+|+.+++.++|+++++++++++|++.|+|||+++
T Consensus 236 ~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~ 314 (661)
T 2ddh_A 236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQ 314 (661)
T ss_dssp CCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSST
T ss_pred cceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCC
Confidence 9999999999999999999888887788876543222 567788899999999999999999999999999999999876
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007523 317 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 396 (600)
Q Consensus 317 ~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q 396 (600)
+.+|.||++||.+|++|+++++.+++++++++++++.+++.....+.++.....+.+..++++|+++++.+.++++.|+|
T Consensus 315 ~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q 394 (661)
T 2ddh_A 315 SEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRM 394 (661)
T ss_dssp TSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999888643322222232223467889999999999999999999999
Q ss_pred HhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchh-HHhhhcC--Ccccc
Q 007523 397 LCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLMQCHC--GVQKA 473 (600)
Q Consensus 397 ~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~--~~~~~ 473 (600)
+|||+||+.++++++++||+++.++++|+|+++++++++.+|+.+.+..++....++..||.+.. .....++ ...+.
T Consensus 395 ~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 474 (661)
T 2ddh_A 395 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRIQPQQVAVWPTM 474 (661)
T ss_dssp HTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCCCGGGGGGGGCCC--------------
T ss_pred HhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHhhhhhhccccccccccch
Confidence 99999999999999999999999999999999999999999999987766665566889997653 2211111 11346
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 007523 474 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 549 (600)
Q Consensus 474 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~~~~~~~~~ 549 (600)
.++.||++++++|++|+++++..+++++++ +++.+++||+++++++++|+||+++++++.|++.|++ ++++++++
T Consensus 475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~a~~~~~~~~~f~~~~~~-~~~~~~~~ 553 (661)
T 2ddh_A 475 VDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPK-IQDKAVQA 553 (661)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHGGG-CSSHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChhHHH
Confidence 788999999999999999999988888744 4567899999999999999999999999999999997 88899999
Q ss_pred HHHHHHHHHhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007523 550 ILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 550 vL~~L~~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~ 598 (600)
||.+||.||+|+.|+++++||+++||||++|++.|++.+.+||.+|||+
T Consensus 554 ~L~~l~~L~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~ 602 (661)
T 2ddh_A 554 VLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPN 602 (661)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997
No 2
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=1.6e-95 Score=818.34 Aligned_cols=596 Identities=81% Similarity=1.263 Sum_probs=512.5
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcc
Q 007523 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (600)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 80 (600)
|.|.++|++||++++||+++|..++++++||.++|+++++|+.++|.|........+..+.+...+.....+...+.++|
T Consensus 1 ~~~~~~l~~er~~~~f~~~~l~~~~~~~~e~~~lr~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G 80 (659)
T 1w07_A 1 MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRIIELR 80 (659)
T ss_dssp -CCCCTTHHHHTTCSSCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGCCTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHccCCCCHHHHHHHHCCChHHHHHHHHHHHHHhcCcccccCCccCCChHHHHHHHHHHHHHHHHhHHHhC
Confidence 77889999999999999999999999889999999999999999988753222233444444333333222233334555
Q ss_pred cch-hhhhhhhhccCcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCC
Q 007523 81 LSE-EASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 159 (600)
Q Consensus 81 ~~~-~g~~~~~~~~~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~ 159 (600)
+.. +.......++.+.++.+|+.+++++|..+||++|+++|||++++|++++|+|+|||+||||+.+++|+|++|+++|
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~ 160 (659)
T 1w07_A 81 LNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTD 160 (659)
T ss_dssp CCHHHHHHHHHHHCCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTT
T ss_pred CCchHHHHHHHHhccchhhhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCC
Confidence 322 2111222334454578888899999999999999999999999999999999999999999999999999998789
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccc
Q 007523 160 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 239 (600)
Q Consensus 160 ~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~ 239 (600)
+|+||||+++|+|+||+|++..||+++|+|+++++++++|+++|+||+||+++|.+.|||+++++|+++|..++++++++
T Consensus 161 g~vLntP~~~G~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~ 240 (659)
T 1w07_A 161 EFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240 (659)
T ss_dssp EEEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCE
T ss_pred EEEEcCCCCCeEEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCce
Confidence 99999999999999999856899999999999877667799999999999889999999999999999985557899999
Q ss_pred eEEecceecCccccccccccccCCCceeec-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 007523 240 VLRFEHVRIPRNQMLMRVSQVTREGKYVQS-NVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGG 318 (600)
Q Consensus 240 ~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~-~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~ 318 (600)
.|.|+||+||++++|+++++|.++|.+..+ ..+. ..+..|..+|+.+++.++|+++++++++++|++.|+|||++++.
T Consensus 241 ~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~~~~~~-~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 319 (659)
T 1w07_A 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQ-LVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGG 319 (659)
T ss_dssp EEEESSEEEEGGGBCCSSEEECTTCCEEECSSCGG-GCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---C
T ss_pred EEEeccEEECHHHhcCCcCccCCCCceecCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCC
Confidence 999999999999999998888888888763 2222 45667788999999999999999999999999999999986667
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 007523 319 PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 398 (600)
Q Consensus 319 ~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~ 398 (600)
+|.||++||.+|++|+++++.+++++++++++++.+++.....+.++.....+.+..++++|+++++.+.++++.|+|+|
T Consensus 320 ~e~pi~~~q~vq~rLa~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~ 399 (659)
T 1w07_A 320 IETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLC 399 (659)
T ss_dssp CCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999988876554444333333346788999999999999999999999999
Q ss_pred cccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHHhhhcCCccccCCCCC
Q 007523 399 GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLN 478 (600)
Q Consensus 399 Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 478 (600)
||+||++++++++++||++..++++|+|+++++++++.+|+.+.+.+++..+.++..||.+.......+....+..++.|
T Consensus 400 GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 479 (659)
T 1w07_A 400 GGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAEDWLN 479 (659)
T ss_dssp GGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHTTTTTSCCCCGGGGGGGGHHHHTSCCCCCCSGGGGGC
T ss_pred cCcccccccCHHHHHHhcceeEEEeCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhhhhhccccccCchhhcCC
Confidence 99999999999999999999999999999999999999999998877777777899999876554433233223467899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHH
Q 007523 479 PSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIP-GKGVKPILEILCHI 557 (600)
Q Consensus 479 ~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~~~-~~~~~~vL~~L~~L 557 (600)
+++++++|++|+++++..+.+++++.++.+++||+++++++++|+||+++++++.|++.|++ ++ +++++++|.+||.|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~a~a~~~~~~~~~f~~~~~~-~~~~~~~~~~l~~l~~l 558 (659)
T 1w07_A 480 PDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKFIAKLEQ-DIGGKGVKKQLNNLCYI 558 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHH
Confidence 99999999999999999999999877677899999999999999999999999999999987 77 89999999999999
Q ss_pred HhHHHHHhchhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007523 558 YALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 558 yaL~~I~~~~~~fl~~~~ls~~~~~~i~~~v~~l~~~Lr~~ 598 (600)
|+|+.|++|++||+++||||++|++.|++.+.+||.+|||+
T Consensus 559 ~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~ 599 (659)
T 1w07_A 559 YALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQVRPN 599 (659)
T ss_dssp HHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997
No 3
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=4.4e-59 Score=516.82 Aligned_cols=470 Identities=18% Similarity=0.207 Sum_probs=365.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh---------c
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS---------V 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~---------~ 92 (600)
++||.++++++++|+.++.. + . .++..........++|+.+.+.||.+ + ||.+.+. +
T Consensus 29 ~~e~~~l~~~~~~~~~~~~~----p--~--~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel 100 (577)
T 2z1q_A 29 DESVKEIARTTRTFVEREVL----P--L--LERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL 100 (577)
T ss_dssp CHHHHHHHHHHHHHHHTTTH----H--H--HHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCc----h--h--HHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 57899999999999986321 0 0 01110000123467899999999987 2 4432111 1
Q ss_pred c--C--cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007523 93 D--E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 168 (600)
Q Consensus 93 ~--~--~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~ 168 (600)
. . +..+.+|..++..+|..+||++||++|||++++|+.++|+++|||++|||+.+++|+|+++++|++|+||
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLn---- 176 (577)
T 2z1q_A 101 SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILN---- 176 (577)
T ss_dssp TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE----
T ss_pred hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEE----
Confidence 1 1 1224567667777899999999999999999999999999999999999999999999997778899999
Q ss_pred CccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceec
Q 007523 169 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 248 (600)
Q Consensus 169 ~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 248 (600)
|+|+|||| +..||+++|+|+++ + .|+++|+|| .+.|||++++.|+++| +++++++.|.|+||+|
T Consensus 177 -G~K~~it~-a~~Ad~~~V~Ar~~--g--~gis~flVp-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fddv~V 240 (577)
T 2z1q_A 177 -GVKQWISN-AGFAHLFTVFAKVD--G--EHFTAFLVE-------RDTPGLSFGPEEKKMG---IKASSTRQVILEDVKV 240 (577)
T ss_dssp -EEEEEEET-TTTCSEEEEEEEET--T--TEEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEEE
T ss_pred -EEeeCCCC-CCccCEEEEEEEeC--C--CeeEEEEEe-------CCCCCeEecCCCCCCC---CCCCceeEEEecceec
Confidence 99999999 89999999999974 2 589999999 7799999999999999 9999999999999999
Q ss_pred CccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHH
Q 007523 249 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~ 328 (600)
|.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 241 P~~~llg~------~g~g~~------~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~-------pi~~~q~ 301 (577)
T 2z1q_A 241 PVENVLGE------IGKGHK------IAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGR-------PIGRFGL 301 (577)
T ss_dssp EGGGEESC------TTCTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSS-------BGGGSHH
T ss_pred cHHHccCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------chhhhHH
Confidence 99999984 566554 5667788899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007523 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST------LPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 402 (600)
Q Consensus 329 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~G 402 (600)
+|++|++|.+.+++++++++++++.++.... .+... ..+.+..++++|+++++.+.++++.|+|+|||+|
T Consensus 302 vq~~La~~~~~~~aar~~~~~aa~~~d~~~~----~~~~~~~~~~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G 377 (577)
T 2z1q_A 302 IQQKLGEMASRIYAAESAVYRTVGLIDEALL----GKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYG 377 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccccchhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCee
Confidence 9999999999999999999999888765321 00000 1245677899999999999999999999999999
Q ss_pred cccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchh-HHhhhcCCccccCCCCCHHH
Q 007523 403 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLMQCHCGVQKAEDWLNPSA 481 (600)
Q Consensus 403 y~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 481 (600)
|+++++++++|||++...+++|+|++++.++++.+++...+ +. .....++.+.. .+.+ +. . ...+.+...
T Consensus 378 ~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~~~~---~~--l~~~~~~~~~~~~~~~--~~-~-~~~l~~~~~ 448 (577)
T 2z1q_A 378 YSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRRALK---GQ--LPLMQAAQRLQKELLE--PS-F-EEPEDLELH 448 (577)
T ss_dssp GBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC------------------------------------CCHHHH
T ss_pred ecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHHHhh---cC--CcHHHHHHHHHHHHcC--CC-C-ChhHHHHHH
Confidence 99999999999999999999999999999999998865432 11 11123444332 1111 00 0 123334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHH
Q 007523 482 ILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALH 561 (600)
Q Consensus 482 ~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~~~~~~~~~vL~~L~~LyaL~ 561 (600)
+++.+..+....+..+..++.+... ..+..+.++|++|+++|++..++.++++. .+. +..|.+++..+++.
T Consensus 449 ~l~~~~~~~~~~~~~~~~~~~~~l~------~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~~~-~~~l~~~~~~~~~~ 519 (577)
T 2z1q_A 449 QVQNLKKLALMVAGLAVQKYGQGVE------EEQEVLGAVADILIDAYAAESALLRARRL--GGL-APVLARIYLAQALD 519 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGG------GCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc-HHHHHHHHHHHHHH
Confidence 7777777777777766666543211 22578899999999999999999999974 233 66777777778888
Q ss_pred HHHhc
Q 007523 562 LVHKH 566 (600)
Q Consensus 562 ~I~~~ 566 (600)
.|...
T Consensus 520 ~~~~~ 524 (577)
T 2z1q_A 520 RAQAG 524 (577)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88888
No 4
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=5.9e-58 Score=507.39 Aligned_cols=499 Identities=17% Similarity=0.218 Sum_probs=372.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHH-HHHHHHHHHHHHHHcccch-----h-hhhhhhhc------c-
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKN-TLRKAAYAWKRIIELRLSE-----E-ASMLRSSV------D- 93 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~------~- 93 (600)
++||.++++++++|+.++.. +. .+.++. ......++|+.+.++||.+ + ||.+.+.. +
T Consensus 34 t~eq~~l~~~vr~f~~~~~~-p~--------~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Ee 104 (597)
T 3owa_A 34 SSEHKMIAKTTEDFIVNEVL-PE--------LEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEK 104 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHTG-GG--------HHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc-hh--------HHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHH
Confidence 57899999999999987421 10 111111 1234578899999999987 2 44332111 1
Q ss_pred -----C-cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 94 -----E-PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 94 -----~-~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
. ...+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++++|++|+||
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLn--- 181 (597)
T 3owa_A 105 FSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLN--- 181 (597)
T ss_dssp HGGGTHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE---
T ss_pred HHccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEe---
Confidence 0 1234566666667788999999999999999999999999999999999999999999998778899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+|||| +..||+++|+|+++. .|+++|+|| .+.|||++.+.|+++| +++++++.|.|+||+
T Consensus 182 --G~K~~is~-a~~Ad~~lV~Art~~----~g~s~flV~-------~~~pGv~v~~~~~~~G---lrgs~t~~v~fddV~ 244 (597)
T 3owa_A 182 --GEKQWITN-SAFADVFIVYAKIDG----EHFSAFIVE-------KDYAGVSTSPEEKKMG---IKCSSTRTLILEDAL 244 (597)
T ss_dssp --EEEEEEET-TTTCSEEEEEEEETT----TEEEEEEEE-------TTSTTEEECCCCCBSS---CTTSCEEEEEEEEEE
T ss_pred --eEEEEeCC-CccCCEEEEEEEeCC----CceEEEEEe-------CCCCCeEEeccccccc---CCCCCceEEEEecee
Confidence 99999999 899999999999742 479999999 7889999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 245 VP~~~lLG~------~g~G~~------~~~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~-------pi~~~q 305 (597)
T 3owa_A 245 VPKENLLGE------IGKGHI------IAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQ-------PIARFP 305 (597)
T ss_dssp EEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSH
T ss_pred ecHHHhcCc------ccchHH------HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------cccccH
Confidence 999999984 555543 5677888999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CC-----CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN--DF-----STLPEAHACTAGLKSLTTTATADGIEECRKLCGG 400 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg 400 (600)
.+|++|++|.+.+++++++++++++.+++........ +. ....+....++++|+++++.+.+++++|+|+|||
T Consensus 306 ~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~GG 385 (597)
T 3owa_A 306 LIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGG 385 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999887543110000 00 0001346678999999999999999999999999
Q ss_pred cccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHHhhhcCC-ccccCCCCCH
Q 007523 401 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCG-VQKAEDWLNP 479 (600)
Q Consensus 401 ~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~ 479 (600)
+||+++++++++|||++...+++|+|++++..+++.+++.+.+ ++.|. +.....+.+.... .+.....-.+
T Consensus 386 ~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~~~k---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l 457 (597)
T 3owa_A 386 YGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRKAMK---GELPL-----LQKAQKLQEELMMMMPEEVGDEPL 457 (597)
T ss_dssp GGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHT---TSSCH-----HHHHHHHHHHHTTC---CCCSSTT
T ss_pred ccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHHHhc---CCcch-----hHHHHHHHHHHhhcCCCccccccH
Confidence 9999999999999999999999999999999999999987643 32221 2222111111000 0110000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C----CCCChHHHHHHH
Q 007523 480 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQD-I----PGKGVKPILEIL 554 (600)
Q Consensus 480 ~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~-~----~~~~~~~vL~~L 554 (600)
+.-...++.. .++...+...+-. +.+..+.+.+..|.++|+.-++.|.+.+.+.+.+++ + ...+....|.++
T Consensus 458 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 534 (597)
T 3owa_A 458 ALQKYLVNNA-KKIGLMVAGLAAQ--KYGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEV 534 (597)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH--HHGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHHHHH
Confidence 1111111211 1112212111111 134566677888999999999999999999998864 2 123455567777
Q ss_pred HHHHhHHHHHhchhHHHhcCCCCHHHHHHHHH
Q 007523 555 CHIYALHLVHKHLGDFVSTGCITAKQASLANE 586 (600)
Q Consensus 555 ~~LyaL~~I~~~~~~fl~~~~ls~~~~~~i~~ 586 (600)
++.-|..+|+......+ ..+-.++..+.+..
T Consensus 535 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 565 (597)
T 3owa_A 535 FCQEAFNEIEAHAKETL-IAVENGDMLRMMLS 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhhccchHHHHHHH
Confidence 77778888888755443 33444444433333
No 5
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=7.4e-55 Score=464.07 Aligned_cols=356 Identities=19% Similarity=0.270 Sum_probs=302.6
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc-------
Q 007523 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV------- 92 (600)
Q Consensus 26 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~------- 92 (600)
.-++||.++++++++|++++.. + .....+....+..++|+.+.+.||.+ + ||.+.++.
T Consensus 28 ~~~~e~~~l~~~~r~~~~~~~~----p-----~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~e 98 (404)
T 2jif_A 28 TFTDEEMMIKSSVKKFAQEQIA----P-----LVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIE 98 (404)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTG----G-----GHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCc----c-----cHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHH
Confidence 4568999999999999987421 1 01112222223467899999999987 2 44322111
Q ss_pred -----cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007523 93 -----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 165 (600)
Q Consensus 93 -----~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 165 (600)
+.+.+ +.+|..++..+|..+|+++||++|||++.+|+ ++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 99 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~--g~g~vln- 174 (404)
T 2jif_A 99 ELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKE--GDYYVLN- 174 (404)
T ss_dssp HHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE-
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEe--CCEEEEE-
Confidence 11222 34566677888999999999999999999985 7999999999999999999999998 7899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecc
Q 007523 166 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 245 (600)
Q Consensus 166 p~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 245 (600)
|+|+||+| +..||+++|+|+++.+++..|+++|+|| .+.|||++.+.|+++| +++++++.|.|||
T Consensus 175 ----G~K~~is~-a~~Ad~~~v~ar~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~ 239 (404)
T 2jif_A 175 ----GSKMWISS-AEHAGLFLVMANVDPTIGYKGITSFLVD-------RDTPGLHIGKPENKLG---LRASSTCPLTFEN 239 (404)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEEE
T ss_pred ----eEEEeecC-CcccCEEEEEEEeCCCCCCCceEEEEEe-------cCCCCeEeccCccccc---CCCCceEEEEEcc
Confidence 99999999 9999999999998655455689999999 7889999999999999 9999999999999
Q ss_pred eecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 007523 246 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 246 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~ 325 (600)
|+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 240 v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~ 300 (404)
T 2jif_A 240 VKVPEANILGQ------IGHGYK------YAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGK-------RLFD 300 (404)
T ss_dssp EEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------cccc
Confidence 99999999984 454443 4566778899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007523 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 405 (600)
||.+|++|++|.+.+++++++++++++.++. +. +....++++|+++++.+.++++.|+|+|||+||++
T Consensus 301 ~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~ 368 (404)
T 2jif_A 301 FQGLQHQVAHVATQLEAARLLTYNAARLLEA-------GK-----PFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTK 368 (404)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----ccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceecC
Confidence 9999999999999999999999999877641 11 12445789999999999999999999999999999
Q ss_pred CCChhhhhcccccccccccchHHHHHHHHHHHHHH
Q 007523 406 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 406 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~ 440 (600)
+++++++|||++...+++|++++++..|++.+++.
T Consensus 369 ~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~~ 403 (404)
T 2jif_A 369 DYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAE 403 (404)
T ss_dssp TSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhccceeecCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999998864
No 6
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=2.9e-53 Score=471.24 Aligned_cols=487 Identities=17% Similarity=0.193 Sum_probs=352.8
Q ss_pred HHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc------------cC
Q 007523 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV------------DE 94 (600)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~------------~~ 94 (600)
++++.+++|+.+... + ..++.......++|+.+.+.||.+ + ||.+.... +.
T Consensus 56 ~l~~~~~~~~~~~~~----~-------~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~ 124 (607)
T 2uxw_A 56 ELVEPVSRFFEEVND----P-------AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDL 124 (607)
T ss_dssp HHHHHHHHHHHHTCC----H-------HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhhcC----H-------HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHccc
Confidence 488999999987421 1 111111223467899999999987 2 44332111 11
Q ss_pred --cchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccc
Q 007523 95 --PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 172 (600)
Q Consensus 95 --~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K 172 (600)
+..+.+|..++..+|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++++|++|+|| |+|
T Consensus 125 s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~Ln-----G~K 199 (607)
T 2uxw_A 125 GVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLN-----GSK 199 (607)
T ss_dssp HHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEE-----EEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEE-----eEE
Confidence 1223455555567889999999999999999999999999999999999999999999998767799999 999
Q ss_pred cccCCCCCCccEEEEEEEEecCC---C--CCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 173 WWPGGLGKVSTHAVVYARLITDG---Q--DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 173 ~~v~~~a~~A~~~vV~A~~~~~~---~--~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
+|||| +..||+++|+|++...+ + ..|+++|+|| .+.|||++.+.|+|+| +++++++.|.|+||+
T Consensus 200 ~~is~-~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp-------~~~~Gv~v~~~~~~~G---~rg~~t~~v~fddv~ 268 (607)
T 2uxw_A 200 LWISN-GGLADIFTVFAKTPVTDPATGAVKEKITAFVVE-------RGFGGITHGPPEKKMG---IKASNTAEVFFDGVR 268 (607)
T ss_dssp EEEET-TTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEE-------GGGSSEEECCCCCCSS---CTTSCEEEEEEEEEE
T ss_pred EeecC-CcccCEEEEEEEecCCCcccCCCCCceEEEEEe-------CCCCCeEEecCccccC---CCCCCeeEEEeccEE
Confidence 99999 99999999999986421 1 4689999999 6789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++||. .|.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 269 VP~~~llG~------~g~G~~------~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~-------pi~~~~ 329 (607)
T 2uxw_A 269 VPSENVLGE------VGSGFK------VAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGE-------KIHNFG 329 (607)
T ss_dssp EEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSH
T ss_pred ecHHHhcCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhcH
Confidence 999999984 566554 6677888899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++++++++++.++. +. ++....++++|+++++.+.+++++|+|+|||+||++++
T Consensus 330 ~vq~~La~~~~~~eaaral~~~aa~~~d~-------~~----~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~ 398 (607)
T 2uxw_A 330 LIQEKLARMVMLQYVTESMAYMVSANMDQ-------GA----TDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEP 398 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999999999998876652 11 23456789999999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHHHHHHHHHh-----cCCCCCcccccc-----ccchhHHhhhcCCccccCCCC
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQL-----GYGNMPVGTTTY-----MGRAEQLMQCHCGVQKAEDWL 477 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~~-----~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~ 477 (600)
+++++|||++...+++|+|++++..++...++...+. .+-.+|.....+ +..+......... ....+..
T Consensus 399 ~l~r~~Rda~~~~i~eGt~~i~~~~ia~~glq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 477 (607)
T 2uxw_A 399 GVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSG-LSLSGLV 477 (607)
T ss_dssp SHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHGGGCSCCCTTC--------------------CC-CCCBTTB
T ss_pred HHHHHHHhcccceeeCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhhccc-ccccccC
Confidence 9999999999999999999999999987777654421 222223222111 1111111110000 0001111
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCChHHHH
Q 007523 478 NP--SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQD----IPGKGVKPIL 551 (600)
Q Consensus 478 ~~--~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~e~~il~~F~~~v~~~----~~~~~~~~vL 551 (600)
++ +...+.++.....+...+..-+.. .+......+..+.+++...++.|.+..-+.+.+++ .+..+....|
T Consensus 478 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~ 554 (607)
T 2uxw_A 478 HPELSRSGELAVRALEQFATVVEAKLIK---HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKML 554 (607)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHH---HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 22 222222333322222221111211 11122223445667777777777666666665532 1222334567
Q ss_pred HHHHHHHhHHHHHhchhHHHhc-CCCCHHH
Q 007523 552 EILCHIYALHLVHKHLGDFVST-GCITAKQ 580 (600)
Q Consensus 552 ~~L~~LyaL~~I~~~~~~fl~~-~~ls~~~ 580 (600)
.+.+.-.++..|++....+.++ ...+.+.
T Consensus 555 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (607)
T 2uxw_A 555 CDTWCIEAAARIREGMAALQSDPWQQELYR 584 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 7788888999999999887765 5544433
No 7
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=3.9e-55 Score=465.00 Aligned_cols=363 Identities=22% Similarity=0.240 Sum_probs=300.0
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhh
Q 007523 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRS 90 (600)
Q Consensus 17 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~ 90 (600)
++.-|++.+ ++||.++++++++|++++... .....+....+..++|+.+.+.||.+ + ||.+.+
T Consensus 11 ~p~~m~~~~--~~e~~~l~~~~r~~~~~~~~~---------~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~ 79 (393)
T 3pfd_A 11 NPSFELFQL--PEEHIALREAIRALAEKEIAP---------YAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGAD 79 (393)
T ss_dssp -------------CHHHHHHHHHHHHHHHTGG---------GHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCC
T ss_pred CCcccCCCC--CHHHHHHHHHHHHHHHHhCch---------HHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCC
Confidence 344456544 489999999999999763210 11112222234567899999999987 2 443321
Q ss_pred hc------------cCcchh--hhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeC
Q 007523 91 SV------------DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 156 (600)
Q Consensus 91 ~~------------~~~~~~--~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~ 156 (600)
+. +.+.++ ..| .++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~- 157 (393)
T 3pfd_A 80 SVATCIVIEEVARVDCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVAD- 157 (393)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEE-
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEc-
Confidence 11 113332 334 35566788999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCc
Q 007523 157 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM 236 (600)
Q Consensus 157 ~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~ 236 (600)
+|+|+|| |+|+|+|| +..||+++|+|+++.+++..|+++|+|| .+.|||++.+.|+++| ++++
T Consensus 158 -~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~ 220 (393)
T 3pfd_A 158 -GDDWILN-----GSKCWITN-GGKSTWYTVMAVTDPDKGANGISAFMVH-------KDDEGFTVGPKERKLG---IKGS 220 (393)
T ss_dssp -TTEEEEE-----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE-------TTSTTEEEEEECCBSS---CTTS
T ss_pred -CCEEEEe-----eEEEEecC-CcccCEEEEEEEeCCCCCCCceEEEEEE-------CCCCCeEecCCCCccc---CCCC
Confidence 7899999 99999999 9999999999998766556789999999 7889999999999999 9999
Q ss_pred ccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007523 237 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN 316 (600)
Q Consensus 237 ~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~ 316 (600)
++++|.||||+||.+++||. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 221 ~~~~v~fddv~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-- 286 (393)
T 3pfd_A 221 PTTELYFENCRIPGDRIIGE------PGTGFK------TALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGR-- 286 (393)
T ss_dssp CEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE--
T ss_pred CceEEEEccEEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCc--
Confidence 99999999999999999984 455443 5667788899999999999999999999999999999999
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007523 317 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 396 (600)
Q Consensus 317 ~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q 396 (600)
||++||.+|++|++|.+.+++++.+++++++.+++ +. ++....++++|+++++.+.++++.|+|
T Consensus 287 -----~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~----~~~~~~~~~aK~~a~~~a~~~~~~a~q 350 (393)
T 3pfd_A 287 -----PVSDNQGVQFMLADMAMKIEAARLMVYSAAARAER-------GE----GDLGFISAASKCFASDVAMEVTTDAVQ 350 (393)
T ss_dssp -----EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------C--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887763 11 123455789999999999999999999
Q ss_pred HhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 397 LCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 397 ~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+|||+||+++++++++|||++...+++|++++++..|++.+|+
T Consensus 351 ~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 351 LFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998863
No 8
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=3e-54 Score=457.43 Aligned_cols=355 Identities=21% Similarity=0.201 Sum_probs=303.0
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c--
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V-- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~-- 92 (600)
-++||.++++++++|+.+... + .....+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~----~-----~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 77 (387)
T 2d29_A 7 EGAEERQVLGPFREFLKAEVA----P-----GAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTG----G-----GHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcc----h-----hHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 358999999999999975321 0 01112222223467899999999987 2 4432111 1
Q ss_pred ----cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 93 ----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 93 ----~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
+.+.+ +.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 153 (387)
T 2d29_A 78 IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKV--EGGWRLN-- 153 (387)
T ss_dssp HHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEe--CCEEEEE--
Confidence 11333 3456557788899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecCC----CCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEE
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 242 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~~----~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~ 242 (600)
|+|+|+|| +..||+++|+|++++++ +..|+++|+|| .+.|||++.+.|+++| +++++++.|.
T Consensus 154 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~ 219 (387)
T 2d29_A 154 ---GTKQFITQ-GSVAGVYVVMARTDPPPSPERKHQGISAFAFF-------RPERGLKVGRKEEKLG---LTASDTAQLI 219 (387)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEE-------CCSSSEEECCCCCCSS---CTTSCEEEEE
T ss_pred ---eEEeccCC-CCcCCEEEEEEEeCCccccCCCCCCeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEE
Confidence 99999999 89999999999986443 45689999999 7789999999999999 9999999999
Q ss_pred ecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc
Q 007523 243 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 322 (600)
Q Consensus 243 f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~ 322 (600)
|+||+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ |
T Consensus 220 f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~ 280 (387)
T 2d29_A 220 LEDLFVPEEALLGE------RGKGFY------DVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGR-------P 280 (387)
T ss_dssp EEEEEEEGGGEESS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------E
T ss_pred EeeEEECHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCc-------c
Confidence 99999999999984 455443 5567788899999999999999999999999999999999 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007523 323 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 402 (600)
Q Consensus 323 i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~G 402 (600)
|++||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+|
T Consensus 281 i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g 348 (387)
T 2d29_A 281 IAEFEGVSFKLAEAATELEAARLLYLKAAELKDA-------GR-----PFTLEAAQAKLFASEAAVKACDEAIQILGGYG 348 (387)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 9999999999999999999999999999887652 11 23467899999999999999999999999999
Q ss_pred cccCCChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 403 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 403 y~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
|+++++++++|||++...+++|++++++..+++.+++
T Consensus 349 ~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~ 385 (387)
T 2d29_A 349 YVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385 (387)
T ss_dssp GSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999885
No 9
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.2e-54 Score=457.20 Aligned_cols=353 Identities=21% Similarity=0.286 Sum_probs=302.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c---
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V--- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~--- 92 (600)
++||.++++++++|+.+... + .....+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~----~-----~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel 76 (379)
T 1ukw_A 6 TEEQRQLQALARRFAKEVIL----P-----VAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEEL 76 (379)
T ss_dssp CHHHHHHHHHHHHHHHHTTG----G-----GHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc----h-----hHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 58999999999999976321 0 01112222233467899999999987 2 4432111 1
Q ss_pred ---cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ---DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ---~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+.+ +.+| .++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 150 (379)
T 1ukw_A 77 AYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQ--GDHYVLN--- 150 (379)
T ss_dssp HHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE---
T ss_pred HHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEe--CCEEEEE---
Confidence 11323 3455 47788899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+|+|| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.|+++| +++++++.|.||||+
T Consensus 151 --G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~~Gv~v~~~~~~~G---~~~~~~~~v~fd~v~ 217 (379)
T 1ukw_A 151 --GTKMWISN-GGEAEWVVVFATVNPELRHKGVVALVVE-------RGTPGFKAIKIHGKMG---QRASGTYELVFEDVK 217 (379)
T ss_dssp --EEEEEEET-TTTEEEEEEEEESCGGGGGGGEEEEEEE-------TTCTTEEEEECCCCSS---CTTSCEEEEEEEEEE
T ss_pred --EEEecccC-CCcCCEEEEEEEcCCCCCCCceEEEEEe-------CCCCCeEecCcccccc---CCCCCeeEEEEeeEE
Confidence 99999999 9999999999998655455689999999 7789999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++||. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 218 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~i~~~q 278 (379)
T 1ukw_A 218 VPVENRLGE------EGEGFK------IAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGE-------PIANFQ 278 (379)
T ss_dssp EEGGGEESC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGGSH
T ss_pred ecHHhcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhhhH
Confidence 999999984 454443 5566778899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||++++
T Consensus 279 ~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 346 (379)
T 1ukw_A 279 AIQFKLVDMLIGIETARMYTYYAAWLADQ-------GL-----PHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREF 346 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhhCCeecCCCC
Confidence 99999999999999999999999887752 11 2345689999999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++++|||++...+++|++++++..+++.+|+
T Consensus 347 ~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 347 PVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp SHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998874
No 10
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.9e-54 Score=455.96 Aligned_cols=355 Identities=20% Similarity=0.196 Sum_probs=303.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhh---hhhc-----
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASML---RSSV----- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~---~~~~----- 92 (600)
-++||.++++++++|+.++.... ....+....+..++|+.+.+.||.+ + ||.+ .++.
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v 75 (383)
T 1buc_A 5 LTDIQQDFLKLAHDFGEKKLAPT---------VTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILA 75 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTT---------HHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchh---------HHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHH
Confidence 35889999999999997642110 1112222223467899999999987 2 4444 2221
Q ss_pred -------cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEE
Q 007523 93 -------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 163 (600)
Q Consensus 93 -------~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vL 163 (600)
+.+.+ +.+|..+++.+|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|++++ +|+|+|
T Consensus 76 ~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~-~~g~~l 154 (383)
T 1buc_A 76 VEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKND-DGTYTL 154 (383)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEE
T ss_pred HHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcC-CCEEEE
Confidence 11222 34565577889999999999999999999999999999999999999999999999874 578999
Q ss_pred ecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEe
Q 007523 164 HSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRF 243 (600)
Q Consensus 164 ntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f 243 (600)
| |+|+|+|| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.|+++| +++++++.|.|
T Consensus 155 n-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~~Gv~v~~~~~~~g---~~~~~~~~v~f 218 (383)
T 1buc_A 155 N-----GSKIFITN-GGAADIYIVFAMTDKSKGNHGITAFILE-------DGTPGFTYGKKEDKMG---IHTSQTMELVF 218 (383)
T ss_dssp E-----EEEEEEET-TTTCSEEEEEEESCSSSSTTSEEEEEEE-------TTCTTEEEEEECCCSS---CTTSCEEEEEE
T ss_pred E-----EEEeccCC-CCcCCEEEEEEEeCCCCCCCceEEEEEE-------CCCCCeEecCcccccc---ccCCceeEEEE
Confidence 9 99999999 8999999999998755455789999999 7789999999999999 99999999999
Q ss_pred cceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccc
Q 007523 244 EHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 323 (600)
Q Consensus 244 ~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i 323 (600)
+||+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||
T Consensus 219 ~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~-------~i 279 (383)
T 1buc_A 219 QDVKVPAENMLGE------EGKGFK------IAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGK-------PL 279 (383)
T ss_dssp EEEEECGGGEESC------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EG
T ss_pred ccEEeCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------ch
Confidence 9999999999984 455443 5566778899999999999999999999999999999999 99
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Q 007523 324 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 403 (600)
Q Consensus 324 ~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy 403 (600)
++||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||
T Consensus 280 ~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~ 347 (383)
T 1buc_A 280 CKFQSISFKLADMKMQIEAARNLVYKAACKKQE-------GK-----PFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGY 347 (383)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhcCCeec
Confidence 999999999999999999999999999887752 11 235668999999999999999999999999999
Q ss_pred ccCCChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 404 LCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 404 ~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
+++++++++|||++...+++|++++++..+++.++
T Consensus 348 ~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l 382 (383)
T 1buc_A 348 SEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382 (383)
T ss_dssp STTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999875
No 11
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=3.9e-54 Score=457.05 Aligned_cols=358 Identities=21% Similarity=0.251 Sum_probs=305.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c--
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V-- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~-- 92 (600)
-++||.++++++++|+.+..... ....+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 6 ~~~~~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 76 (391)
T 2vig_A 6 LPETHQMLLQTCRDFAEKELFPI---------AAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEE 76 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCccc---------HHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHH
Confidence 35899999999999997632100 1112222233467899999999987 2 4432211 1
Q ss_pred ----cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 93 ----DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 93 ----~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
+.+. .+.+|..++...|..+|+++|+++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 152 (391)
T 2vig_A 77 ISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAE--GDSWVLN-- 152 (391)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEe--CCEEEEe--
Confidence 1122 24556457788899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+|||| +..||+++|+|+++.++++.|+++|+|| .+.|||++.+.|+++| +++++++.|.||||
T Consensus 153 ---G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~r~~~~~~v~fd~v 218 (391)
T 2vig_A 153 ---GTKAWITN-AWEASAAVVFASTDRALQNKSISAFLVP-------MPTPGLTLGKKEDKLG---IRGSSTANLIFEDC 218 (391)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECCSSSTTSCEEEEEEE-------SSCTTEEECCCCCBSS---CTTSCEEEEEEEEE
T ss_pred ---eEEEeecC-CCcCCEEEEEEEeCCCCCCCceEEEEEe-------CCCCCeEecCcccccc---CCCCCeeEEEECcE
Confidence 99999999 8999999999998654345689999999 7789999999999999 99999999999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++||. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 219 ~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~ 279 (391)
T 2vig_A 219 RIPKDSILGE------PGMGFK------IAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGA-------PLTKL 279 (391)
T ss_dssp EEEGGGEESS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------cchhh
Confidence 9999999984 555443 5566788899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|++|.+.+++++++++++++.++. +. .....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 280 q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~ 347 (391)
T 2vig_A 280 QVIQFKLADMALALESARLLTWRAAMLKDN-------KK-----PFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTE 347 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhCCeEecCC
Confidence 999999999999999999999999887641 11 134568999999999999999999999999999999
Q ss_pred CChhhhhcccccccccccchHHHHHHHHHHHHHHHH
Q 007523 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 442 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~ 442 (600)
++++++|||++...+++|++++++..+++.+++.++
T Consensus 348 ~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~ 383 (391)
T 2vig_A 348 MPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYR 383 (391)
T ss_dssp SSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999998764
No 12
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.7e-54 Score=458.68 Aligned_cols=357 Identities=18% Similarity=0.240 Sum_probs=302.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHH--HHHHHHHHcccch-----h-hhhhhhh------c
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAA--YAWKRIIELRLSE-----E-ASMLRSS------V 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~~~-----~-g~~~~~~------~ 92 (600)
-++||.++++++++|+.++.... ....+....+.. ++|+.+.+.||.+ + ||.+.++ +
T Consensus 13 ~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ 83 (394)
T 1ivh_A 13 LSEEQRQLRQTMAKFLQEHLAPK---------AQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVM 83 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChh---------HHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHH
Confidence 46899999999999997632110 111111112223 7899999999987 2 4432111 1
Q ss_pred ------cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEe
Q 007523 93 ------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 164 (600)
Q Consensus 93 ------~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLn 164 (600)
+.+. .+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 84 eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln 161 (394)
T 1ivh_A 84 EEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKK--GNHYILN 161 (394)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEEC--SSEEEEE
T ss_pred HHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEc--CCEEEEE
Confidence 1122 33556557888999999999999999999999999999999999999999999999998 7899999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEEecC--CCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEE
Q 007523 165 SPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 242 (600)
Q Consensus 165 tp~~~G~K~~v~~~a~~A~~~vV~A~~~~~--~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~ 242 (600)
|+|+|++| +..||+++|+|+++++ +++.|+++|+|| .+.|||++.+.|+++| +++++++.|.
T Consensus 162 -----G~K~~vs~-~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~ 225 (394)
T 1ivh_A 162 -----GNKFWITN-GPDADVLIVYAKTDLAAVPASRGITAFIVE-------KGMPGFSTSKKLDKLG---MRGSNTCELI 225 (394)
T ss_dssp -----EEEEEEET-GGGCSEEEEEEESCTTCSSGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEE
T ss_pred -----eEEEeeCC-CCcCCEEEEEEEeCCcccCCCCCeEEEEEe-------CCCCCeEecccccccc---CCCCCeeEEE
Confidence 99999999 9999999999998654 344689999999 7889999999999999 9999999999
Q ss_pred ecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc
Q 007523 243 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 322 (600)
Q Consensus 243 f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~ 322 (600)
|+||+||.+++||. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ |
T Consensus 226 fd~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~ 286 (394)
T 1ivh_A 226 FEDCKIPAANILGH------ENKGVY------VLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQ-------K 286 (394)
T ss_dssp EEEEEEEGGGEESC------TTCHHH------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTE-------E
T ss_pred ECcEEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------c
Confidence 99999999999984 454443 5567778899999999999999999999999999999999 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 007523 323 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 402 (600)
Q Consensus 323 i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~G 402 (600)
|++||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+|
T Consensus 287 i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g 354 (394)
T 1ivh_A 287 IGHFQLMQGKMADMYTRLMACRQYVYNVAKACDE-------GH-----CTAKDCAGVILYSAECATQVALDGIQCFGGNG 354 (394)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999887642 11 23456889999999999999999999999999
Q ss_pred cccCCChhhhhcccccccccccchHHHHHHHHHHHHHHH
Q 007523 403 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 441 (600)
Q Consensus 403 y~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 441 (600)
|+++++++++|||++...+++|++++++..+++.+++.+
T Consensus 355 ~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~~ 393 (394)
T 1ivh_A 355 YINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 393 (394)
T ss_dssp GBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC-
T ss_pred ccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998643
No 13
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=5.5e-54 Score=456.61 Aligned_cols=357 Identities=21% Similarity=0.267 Sum_probs=302.3
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c--
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V-- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~-- 92 (600)
-++||.++++++++|+.++.. + .....+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 16 ~~~~~~~l~~~~r~~~~~~~~----~-----~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 86 (396)
T 1egd_A 16 FTEQQKEFQATARKFAREEII----P-----VAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEE 86 (396)
T ss_dssp CCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCc----h-----hHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHH
Confidence 358999999999999975211 0 11112222223457899999999987 2 4432111 1
Q ss_pred ----cCcchhh-hhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ----DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ----~~~~~~~-~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+.++. .|..++..+|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 161 (396)
T 1egd_A 87 LAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN--- 161 (396)
T ss_dssp HHHHCHHHHHHHHHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEEC--SSEEEEE---
T ss_pred HHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEe--CCEEEEE---
Confidence 1133332 56666677788999999999999999999999999999999999999999999988 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCC---CceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEec
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQD---HGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 244 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~---~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~ 244 (600)
|+|+|+|| +..||+++|+|+++.+++. .|+++|+|| .+.|||++.+.|+++| +++++++.|.||
T Consensus 162 --G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd 228 (396)
T 1egd_A 162 --GQKMWITN-GGKANWYFLLARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG---QRCSDTRGIVFE 228 (396)
T ss_dssp --EEEEEEET-TTTCSEEEEEEECCCCTTSCGGGTEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEE
T ss_pred --EEEEcccC-CcccCEEEEEEEeCCCCCCCCCCCeEEEEEe-------CCCCCeeeCCcccccc---ccCCCeeEEEEC
Confidence 99999999 8999999999998654333 689999999 7889999999999999 999999999999
Q ss_pred ceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcccc
Q 007523 245 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 324 (600)
Q Consensus 245 ~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~ 324 (600)
||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+
T Consensus 229 ~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~ 289 (396)
T 1egd_A 229 DVKVPKENVLIG------DGAGFK------VAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGK-------LLV 289 (396)
T ss_dssp EEEEEGGGBSSS------TTBHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTE-------EGG
T ss_pred cEEECHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCc-------chh
Confidence 999999999984 455443 5566778899999999999999999999999999999999 999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 007523 325 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 404 (600)
Q Consensus 325 ~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~ 404 (600)
+||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||+
T Consensus 290 ~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~ 357 (396)
T 1egd_A 290 EHQAISFMLAEMAMKVELARMSYQRAAWEVDS-------GR-----RNTYYASIAKAFAGDIANQLATDAVQILGGNGFN 357 (396)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TS-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTB
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999999887652 11 2345688999999999999999999999999999
Q ss_pred cCCChhhhhcccccccccccchHHHHHHHHHHHHHHH
Q 007523 405 CSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 441 (600)
Q Consensus 405 ~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 441 (600)
++++++++|||++...+++|++++++..+++.+++.+
T Consensus 358 ~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~~ 394 (396)
T 1egd_A 358 TEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKY 394 (396)
T ss_dssp TTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998753
No 14
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=6.1e-54 Score=452.65 Aligned_cols=348 Identities=21% Similarity=0.247 Sum_probs=298.1
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c---
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V--- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~--- 92 (600)
++||.++++++++|+.+... ......+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 4 ~~e~~~l~~~~r~~~~~~~~---------~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 74 (372)
T 2dvl_A 4 TQEQRLVLDAVRRVAREVLY---------PLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEEL 74 (372)
T ss_dssp CHHHHHHHHHHHHHHHHTHH---------HHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc---------hhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHH
Confidence 58999999999999976310 011112222223457899999999987 2 4432111 1
Q ss_pred ---cCc--chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ---DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ---~~~--~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+ ..+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 149 (372)
T 2dvl_A 75 AAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRV--KGGFVLN--- 149 (372)
T ss_dssp HHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEE--TTEEEEE---
T ss_pred HhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEE--CCEEEEE---
Confidence 112 234455456788899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEeccee
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 247 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 247 (600)
|+|+|+|| +..||+++|+|+++. |+++|+|| .+.|||++.+.|+++| +++++++.|.||||+
T Consensus 150 --G~K~~~s~-~~~Ad~~~v~a~~~~-----g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~ 211 (372)
T 2dvl_A 150 --GVKSWITS-AGHAHLYVVMARTEK-----GISAFLVE-------KGTPGLSFGRPEEKMG---LHAAHTAEVRLEEVF 211 (372)
T ss_dssp --EEEEEEET-TTTCSEEEEEEEETT-----EEEEEEEE-------TTCTTEEECCCCCCSS---CTTSCEEEEEEEEEE
T ss_pred --eEEEeecC-CCcCCEEEEEEEeCC-----CcEEEEEe-------CCCCCeEecCcccccc---cCcCCeeEEEECcEE
Confidence 99999999 999999999999742 78999999 7889999999999999 999999999999999
Q ss_pred cCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchH
Q 007523 248 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q 327 (600)
||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 212 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q 272 (372)
T 2dvl_A 212 VPEENLLGE------EGRGLA------YALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGK-------KLKEHQ 272 (372)
T ss_dssp EEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSH
T ss_pred eCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-------chhhhH
Confidence 999999984 455443 5567788899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||++++
T Consensus 273 ~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 340 (372)
T 2dvl_A 273 AIAFKIADMHVKIAAARALVLEAARKKDR-------GE-----RFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDY 340 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----chHHHHHHHHHHHHHHHHHHHHHHHHhhcCeecCCCC
Confidence 99999999999999999999999877641 11 2345689999999999999999999999999999999
Q ss_pred ChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
+++++|||++...+++|++++++..+++.++
T Consensus 341 ~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l 371 (372)
T 2dvl_A 341 RVERYYRDAKVTEIYEGTSEIQRLVIARELY 371 (372)
T ss_dssp SHHHHHHHHHGGGTTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhcceecCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999886
No 15
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=5e-54 Score=457.90 Aligned_cols=352 Identities=18% Similarity=0.209 Sum_probs=302.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc------c-
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV------D- 93 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~------~- 93 (600)
-++||.++++++++|+.++.... ....+....+..++|+.+.+.||.+ + ||.+.++. +
T Consensus 29 ~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ee 99 (403)
T 3r7k_A 29 TTPERRALSQMARSFVEREIAPK---------LAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEA 99 (403)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChh---------HHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHH
Confidence 35899999999999998642110 1112222234567899999999987 2 44332111 0
Q ss_pred -----Cc-c--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007523 94 -----EP-A--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 165 (600)
Q Consensus 94 -----~~-~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 165 (600)
.+ . ++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 100 la~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln- 176 (403)
T 3r7k_A 100 ILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVRE--GDTYVVN- 176 (403)
T ss_dssp HHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEC--SSEEEEE-
T ss_pred HHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEE--CCEEEEE-
Confidence 12 1 34446667888999999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecc
Q 007523 166 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 245 (600)
Q Consensus 166 p~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 245 (600)
|+|+|++| +..||+++|+|+++.+ +..|+++|+|| .+.|||++.+.|+++| +++++++.|.|+|
T Consensus 177 ----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~ 240 (403)
T 3r7k_A 177 ----GAKTFITS-GVRADFVTTAVRTGGP-GYGGVSLLVID-------KNSPGFEVSRRLDKMG---WRCSDTAELSFVD 240 (403)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE-------TTCTTEEEEEECCBSS---CTTSCEEEEEEEE
T ss_pred ----EEEEcccC-CccCCEEEEEEEcCCC-CCCceEEEEEe-------CCCCCeEecCcccccC---CCCCCceEEEEee
Confidence 99999999 9999999999998655 55789999999 7789999999999999 9999999999999
Q ss_pred eecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 007523 246 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 246 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~ 325 (600)
|+||.+++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 241 v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 301 (403)
T 3r7k_A 241 VRVPADNLVGA------ENSGFL------QIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGR-------PLTG 301 (403)
T ss_dssp EEEEGGGEESS------TTCHHH------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCC-------chhh
Confidence 99999999984 454443 5567788899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007523 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 405 (600)
||.+|++|++|.+.+++++++++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||++
T Consensus 302 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~G~~~ 369 (403)
T 3r7k_A 302 RQIIRHKLAEMARQVDVACTYTRAVMQRWLA-------GE-----DVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMR 369 (403)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEecC
Confidence 9999999999999999999999999887752 11 22456889999999999999999999999999999
Q ss_pred CCChhhhhcccccccccccchHHHHHHHHHHH
Q 007523 406 SSGLPELFAVYVPACTYEGDNIVLLLQVARFL 437 (600)
Q Consensus 406 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 437 (600)
+++++++|||++...+++|++++++..|++.+
T Consensus 370 ~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 370 ESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp TSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 16
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=6e-54 Score=457.25 Aligned_cols=361 Identities=19% Similarity=0.212 Sum_probs=305.4
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhh
Q 007523 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRS 90 (600)
Q Consensus 17 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~ 90 (600)
++..|++ .-++||.++++++++|+.++.... ....+....+..++|+.+.+.||.+ + ||.+.+
T Consensus 18 ~~~~M~~--~~~~e~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~ 86 (403)
T 3p4t_A 18 GPGSMSI--WTTAEREALRKTVRAFAEREVLPH---------AHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGD 86 (403)
T ss_dssp -----CT--TSSHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCC
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHhCchh---------HHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCC
Confidence 4555655 335899999999999998742111 1112222234568899999999987 2 443321
Q ss_pred h------------ccCcc---hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEe
Q 007523 91 S------------VDEPA---FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFD 155 (600)
Q Consensus 91 ~------------~~~~~---~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d 155 (600)
+ .+.+. ++.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++
T Consensus 87 ~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~ 166 (403)
T 3p4t_A 87 GADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLD 166 (403)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEe
Confidence 1 12233 34567667788899999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCC
Q 007523 156 PQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT 235 (600)
Q Consensus 156 ~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~ 235 (600)
+|+|+|| |+|+|++| +..||+++|+|+++.+ +..|+++|+|| .+.|||++.+.|+++| +++
T Consensus 167 --~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~ 227 (403)
T 3p4t_A 167 --GDHYVIN-----GAKTYITS-GVRADYVVTAARTGGP-GAGGVSLIVVD-------KGTPGFEVTRKLDKMG---WRS 227 (403)
T ss_dssp --TTEEEEE-----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE-------TTCTTEEEEEECCBSS---CTT
T ss_pred --CCEEEEE-----EEEEEecC-CcccCEEEEEEEeCCC-CCCceEEEEEe-------CCCCCeEecCCCCccc---CCC
Confidence 8899999 99999999 9999999999998654 55789999999 7789999999999999 999
Q ss_pred cccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007523 236 MDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSK 315 (600)
Q Consensus 236 ~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~ 315 (600)
++++.|.||||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 228 ~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~- 294 (403)
T 3p4t_A 228 SDTAELSYTDVRVPVANLVGS------ENTGFA------QIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGR- 294 (403)
T ss_dssp SCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-
T ss_pred CCeeEEEEcceEecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-
Confidence 999999999999999999984 454443 5667788899999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 007523 316 NGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECR 395 (600)
Q Consensus 316 ~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~ 395 (600)
||++||.+|++|++|.+.+++++++++++++.++. ++. .....++++|+++++.+.++++.|+
T Consensus 295 ------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~~----~~~~~~~~aK~~a~~~a~~v~~~a~ 357 (403)
T 3p4t_A 295 ------PLISRQAVQNTLAGMARRIDVARVYTRHVVERQLA-------GET----NLIAEVCFAKNTAVEAGEWVANQAV 357 (403)
T ss_dssp ------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887752 111 1155688999999999999999999
Q ss_pred HHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHH
Q 007523 396 KLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 437 (600)
Q Consensus 396 q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 437 (600)
|+|||+||+++++++++|||++...+++|++++++..+++.+
T Consensus 358 q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 399 (403)
T 3p4t_A 358 QLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399 (403)
T ss_dssp HHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999977
No 17
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.9e-53 Score=450.92 Aligned_cols=353 Identities=22% Similarity=0.258 Sum_probs=301.3
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh---------
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS--------- 91 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~--------- 91 (600)
-++||.++++++++|+.++.... ....+....+..++|+.+.+.||.+ + ||.+.++
T Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 80 (385)
T 2pg0_A 10 LREEHHMFRAAFRKFLEKEAYPH---------YNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEE 80 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchh---------HHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHH
Confidence 35899999999999997632111 1112222233467899999999987 2 4432111
Q ss_pred ---cc-CcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 92 ---VD-EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 92 ---~~-~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
.+ .+.++.+|..++...|..+|+++|+++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 81 la~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 155 (385)
T 2pg0_A 81 LEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD--GDYYIVN--- 155 (385)
T ss_dssp HHHHCGGGHHHHHHHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE---
T ss_pred HHhhCCchHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEc--CCEEEEE---
Confidence 12 23334347667888999999999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecC--CCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecc
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 245 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~--~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 245 (600)
|+|+|+|| +..||+++|+|+++++ +++.|+++|+|| .+.|||++.+.|+++| +++++++.|.|||
T Consensus 156 --G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~fd~ 222 (385)
T 2pg0_A 156 --GQKTFITN-GIHADLIVVACKTDPQAKPPHRGISLLVVE-------RDTPGFTRGRKLEKVG---LHAQDTAELFFQD 222 (385)
T ss_dssp --EEEEEETT-TTTCSEEEEEEESCTTCSSGGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCCEEEEEEE
T ss_pred --eEEecccC-CcccCEEEEEEEeCCccCCCCCceEEEEEe-------CCCCCeEecCCccccc---cCCCceEEEEEcc
Confidence 99999999 9999999999998644 345689999999 7789999999999999 9999999999999
Q ss_pred eecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 007523 246 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 246 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~ 325 (600)
|+||.+++|+. .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 223 v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 283 (385)
T 2pg0_A 223 AKVPAYNLLGE------EGKGFY------YLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGK-------RVSE 283 (385)
T ss_dssp EEEEGGGEESC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred eEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC-------ccch
Confidence 99999999984 455443 5566778899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007523 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 405 (600)
||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||++
T Consensus 284 ~q~v~~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~g~~~ 351 (385)
T 2pg0_A 284 FQTVQFRLAEMATEIALGRTFVDRVIEEHMA-------GK-----QIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYME 351 (385)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 9999999999999999999999999887652 11 23567899999999999999999999999999999
Q ss_pred CCChhhhhcccccccccccchHHHHHHHHHHH
Q 007523 406 SSGLPELFAVYVPACTYEGDNIVLLLQVARFL 437 (600)
Q Consensus 406 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~l 437 (600)
+++++++|||++...+++|++++++..+++.+
T Consensus 352 ~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 352 EYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp TSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred CCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864
No 18
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2e-53 Score=451.75 Aligned_cols=354 Identities=20% Similarity=0.235 Sum_probs=301.1
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------cc-
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------VD- 93 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~~- 93 (600)
-++||.++++++++|+.++.. +....++....+..++|+.+.+.||.+ + ||.+.+. ++
T Consensus 19 ~~~e~~~~~~~~r~~~~~~~~---------~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ee 89 (393)
T 1rx0_A 19 LNEEQKEFQKVAFDFAAREMA---------PNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEA 89 (393)
T ss_dssp CCHHHHHHHHHHHHHHHHHTH---------HHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCC---------ccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHH
Confidence 468999999999999976321 011122222223467899999999987 2 4432211 11
Q ss_pred -----Ccc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 94 -----EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 94 -----~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
.+. .+.+|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 90 la~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-- 164 (393)
T 1rx0_A 90 LATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQ--GDHYILN-- 164 (393)
T ss_dssp HHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhCcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEc--CCEEEEE--
Confidence 121 233453 6778899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+|+|| +..||+++|+|+++. +++.|+++|+|| .+.|||++.+.++++| +++.+++.|.||||
T Consensus 165 ---G~K~~is~-a~~Ad~~~v~a~~~~-~~~~g~~~flV~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~fd~v 229 (393)
T 1rx0_A 165 ---GSKAFISG-AGESDIYVVMCRTGG-PGPKGISCIVVE-------KGTPGLSFGKKEKKVG---WNSQPTRAVIFEDC 229 (393)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEESSS-SSGGGEEEEEEE-------TTCTTEEECCCCCBSS---CTTSCEEEEEEEEE
T ss_pred ---eEEEeecC-CccCCEEEEEEEcCC-CCCCceEEEEEe-------CCCCCeEecCcccccc---cCCCCceEEEEcCe
Confidence 99999999 999999999999753 345689999999 7889999999999999 99999999999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 230 ~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~ 290 (393)
T 1rx0_A 230 AVPVANRIGS------EGQGFL------IAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGE-------PLASN 290 (393)
T ss_dssp EEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGC
T ss_pred EeCHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------chhhh
Confidence 9999999984 454443 4556777899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|++|.+.+++++.+++++++.++. ++ .+....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 291 q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~ 359 (393)
T 1rx0_A 291 QYLQFTLADMATRLVAARLMVRNAAVALQE-------ER----KDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKD 359 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 999999999999999999999999887652 11 2346678999999999999999999999999999999
Q ss_pred CChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
++++++|||++...+++|++++++..+++.+|+
T Consensus 360 ~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 392 (393)
T 1rx0_A 360 YAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392 (393)
T ss_dssp STHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhccCceecCChHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999875
No 19
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=3.3e-53 Score=453.55 Aligned_cols=360 Identities=18% Similarity=0.212 Sum_probs=301.1
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHH------------------HHHHHHHHHHHHcccch----
Q 007523 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTL------------------RKAAYAWKRIIELRLSE---- 83 (600)
Q Consensus 26 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~G~~~---- 83 (600)
.-++||.++++++++|+.++.. + ......... ....++|+.+.+.||.+
T Consensus 8 ~~~~~~~~l~~~~r~~~~~~~~------p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P 78 (415)
T 4hr3_A 8 APSARAAELIAAVREFIDAEVM------P---VERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLP 78 (415)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHH------H---HHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCC------c---cHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCC
Confidence 3468999999999999987410 0 011111111 14467899999999987
Q ss_pred -h-hhhhhhhc------c----C---cchhhhh--hhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCC
Q 007523 84 -E-ASMLRSSV------D----E---PAFTDLH--WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNV 145 (600)
Q Consensus 84 -~-g~~~~~~~------~----~---~~~~~~h--~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~-~Gsd~ 145 (600)
+ ||.+.++. + . +.++..+ ...+...|..+|+++||++|||++++|+.++|+++|||+ +|||+
T Consensus 79 ~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~ 158 (415)
T 4hr3_A 79 DPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDA 158 (415)
T ss_dssp CTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSG
T ss_pred HHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCch
Confidence 2 44332111 1 1 1122222 122346889999999999999999999999999999999 99999
Q ss_pred CCCceEEEEeCCCCeEEEecCCCCccccccCCCCCC--ccEEEEEEEEecCC-CCCceEEEEEeeccCCCCCCCCCeEEe
Q 007523 146 QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIG 222 (600)
Q Consensus 146 ~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~--A~~~vV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~i~ 222 (600)
..++|+|+++ +|+|+|| |+|+|||| +.+ ||+++|+|++++++ +..|+++|+|| .+.|||++.
T Consensus 159 ~~~~t~A~~~--g~g~~ln-----G~K~~is~-a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~-------~~~pGv~v~ 223 (415)
T 4hr3_A 159 TNMAATAVVE--GDEVVIN-----GRKWWSTG-VGHPDCKVIIFMGLTDPNAHRYARHSMVLVP-------MDTPGITVE 223 (415)
T ss_dssp GGCCCEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCTTSCTTSSEEEEEEE-------TTSTTEEEE
T ss_pred hhCeeEEEEE--CCEEEEe-----eEEeeECC-CCCCCCCEEEEEEEeCCCCCCCCceEEEEEE-------cCCCceEec
Confidence 9999999998 8999999 99999999 855 99999999987543 34689999999 788999999
Q ss_pred ccCCccCCCCcCCcc--cceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 223 DIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC 300 (600)
Q Consensus 223 ~~~~~~G~~~~~~~~--~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~ 300 (600)
+.|+++| +++++ +++|.|+||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++
T Consensus 224 ~~~~~~g---~r~~~~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~ 288 (415)
T 4hr3_A 224 RMLPTMG---FYDEPGGHGVVSFDNVRLPADAFIAG------PGKGFE------IAQGRLGPGRVHHAMRLIGLAEVALE 288 (415)
T ss_dssp EECCBTT---BCCTTTCEEEEEEEEEEEEGGGBSSC------TTCHHH------HHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccc---cCCCCCCeeEEEEccEEECHHHcCCC------CCchHH------HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99887 9999999999999999984 455443 45667778999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHH
Q 007523 301 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 380 (600)
Q Consensus 301 ~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K 380 (600)
.+++|+++|+|||+ ||++||.+|++|++|.+.+++++++++++++.+++. . ..+....++++|
T Consensus 289 ~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-------~---~~~~~~~~~~aK 351 (415)
T 4hr3_A 289 HACRRGLDRTAFGK-------PLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTV-------G---IMGALSAVSEIK 351 (415)
T ss_dssp HHHHHHHHCEETTE-------EGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------C---GGGCHHHHHHHH
T ss_pred HHHHHHhcCccCCC-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c---CCchHHHHHHHH
Confidence 99999999999999 999999999999999999999999999998877631 0 123456788999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHH
Q 007523 381 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 441 (600)
Q Consensus 381 ~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~ 441 (600)
.++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..+++.+|+.+
T Consensus 352 ~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l~~~ 412 (415)
T 4hr3_A 352 VAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKY 412 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 20
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=4.2e-54 Score=457.51 Aligned_cols=358 Identities=21% Similarity=0.211 Sum_probs=297.8
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc-
Q 007523 20 EMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV- 92 (600)
Q Consensus 20 ~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~- 92 (600)
.|++ .-++||.++++++++|+.++.. ......+....+..++|+.+.+.||.+ + ||.+.++.
T Consensus 14 ~m~~--~~~~e~~~l~~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~ 82 (396)
T 3ii9_A 14 LLDQ--QLADDERMVRDAAHAYAQGKLA---------PRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVS 82 (396)
T ss_dssp CGGG--GSCHHHHHHHHHHHHHCCCCCH---------HHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHH
T ss_pred ccCC--CCCHHHHHHHHHHHHHHHHhCC---------hhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHH
Confidence 3444 3468999999999999865321 011122222234567899999999987 2 44332111
Q ss_pred -----------cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCC
Q 007523 93 -----------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 159 (600)
Q Consensus 93 -----------~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~ 159 (600)
+.+. .+.+|..++...|..+|+++|+++|||++++|+.++|+++|||++|||+.+++|+|+++ +|
T Consensus 83 ~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~ 160 (396)
T 3ii9_A 83 YGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKV--PG 160 (396)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEE--TT
T ss_pred HHHHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEe--CC
Confidence 1122 24566666677899999999999999999999999999999999999999999999998 89
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccc
Q 007523 160 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 239 (600)
Q Consensus 160 ~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~ 239 (600)
+|+|| |+|.|++| +..||+++|+|+++.+ +..|+++|+|| .+.|||++.+.|+++| +++++++
T Consensus 161 g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~~-g~~g~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~ 223 (396)
T 3ii9_A 161 GYSLS-----GSKMWITN-SPIADVFVVWAKLDED-GRDEIRGFILE-------KGCKGLSAPAIHGKVG---LRASITG 223 (396)
T ss_dssp EEEEE-----EEEEEEET-GGGCSEEEEEEEEEET-TEEEEEEEEEE-------TTCTTEECCBCCCCSS---CTTSCEE
T ss_pred EEEEE-----EEEEeECC-CccCCEEEEEEEecCC-CCCceEEEEEe-------cCCCCeEecccccccc---CCcCCee
Confidence 99999 99999999 9999999999998733 34579999999 7789999999999999 9999999
Q ss_pred eEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007523 240 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 319 (600)
Q Consensus 240 ~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~ 319 (600)
.|.|+||+||.+++|+. +.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 224 ~v~fddv~Vp~~~~l~~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~----- 285 (396)
T 3ii9_A 224 EIVLDEAFVPEENILPH-------VKGLR------GPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGR----- 285 (396)
T ss_dssp EEEEEEEEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-----
T ss_pred EEEEccEEECHHHccCC-------ChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCC-----
Confidence 99999999999999973 33332 5567788899999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 007523 320 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 399 (600)
Q Consensus 320 e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~G 399 (600)
||++||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+||
T Consensus 286 --~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~G 351 (396)
T 3ii9_A 286 --PLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDE-------GT-----AAVEITSIMKRNSCGKALDIARLARDMLG 351 (396)
T ss_dssp --EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999887763 11 23456889999999999999999999999
Q ss_pred ccccccCCChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 400 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 400 g~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
|+||+++++++++|||++...+++|++++++..+++.+++
T Consensus 352 g~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llg 391 (396)
T 3ii9_A 352 GNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTG 391 (396)
T ss_dssp SCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHS
T ss_pred cccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999975
No 21
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=1.7e-53 Score=457.03 Aligned_cols=352 Identities=21% Similarity=0.283 Sum_probs=298.3
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h-hhhhhhh------c--
Q 007523 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E-ASMLRSS------V-- 92 (600)
Q Consensus 26 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~-g~~~~~~------~-- 92 (600)
.-++||.++++++++|++++.. + . ...+.....+..++|+.+.+.||.+ + ||.+.+. +
T Consensus 54 ~l~~e~~~l~~~~r~f~~~~~~----p--~---~~~~~~~~~~p~~~~~~l~e~Gl~~l~~pe~GG~G~~~~~~~~v~ee 124 (436)
T 2ix5_A 54 LLTPEEQAIRKKVRECMEKEVA----P--I---MTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAE 124 (436)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTH----H--H---HHHHHHHTCCCGGGHHHHHTTTCTTTTCCSTTCCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCC----h--h---hHHHHhcCCCCHHHHHHHHHcCCCcCcCCCCCCCCCCHHHHHHHHHH
Confidence 3468999999999999976321 0 0 0111111223456899999999987 2 4432111 1
Q ss_pred ----cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 93 ----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 93 ----~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
+.+.+ +.+|..+++.+|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 125 la~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~--gdg~vLn-- 200 (436)
T 2ix5_A 125 IARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKV--EGGWKIN-- 200 (436)
T ss_dssp HHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEe--CCEEEEe--
Confidence 11222 3557667888999999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+||+| +..||+++|+|+++.+ .++++|+|| .+.|||++.+.|+++| +++++++.|.|+||
T Consensus 201 ---G~K~~is~-a~~Ad~~lv~Ar~~~~---~~~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~fddv 263 (436)
T 2ix5_A 201 ---GQKRWIGN-STFADLLIIFARNTTT---NQINGFIVK-------KDAPGLKATKIPNKIG---LRMVQNGDILLQNV 263 (436)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEEETTT---SSEEEEEEE-------TTCTTEEEEECCCBSS---STTSCEEEEEEEEE
T ss_pred ---eeccCCCC-CcccCEEEEEEEECCC---CcEEEEEEE-------CCCCCeEeeccccccC---CCcCCceeEEeccE
Confidence 99999999 9999999999997532 368999999 7889999999999999 99999999999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++|+. .+| +. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 264 ~VP~~~~lg~-----~~g--~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~-------pi~~~ 323 (436)
T 2ix5_A 264 FVPDEDRLPG-----VNS--FQ------DTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGA-------PLAAF 323 (436)
T ss_dssp EEEGGGBCTT-----CSS--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCc-----ccc--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhhc
Confidence 9999999984 122 22 4556778899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|++|.+.+++++++++++++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++
T Consensus 324 q~vq~~la~~~~~~~aar~l~~~aa~~~d~-------g~-----~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e 391 (436)
T 2ix5_A 324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYET-------GQ-----MTPGQASLGKAWISSKARETASLGRELLGGNGILAD 391 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999887652 11 124457899999999999999999999999999999
Q ss_pred CChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
++++++|||++...+++|++++++..+++.+++
T Consensus 392 ~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llg 424 (436)
T 2ix5_A 392 FLVAKAFCDLEPIYTYEGTYDINTLVTGREVTG 424 (436)
T ss_dssp GSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHhhcceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999874
No 22
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.9e-53 Score=451.97 Aligned_cols=350 Identities=22% Similarity=0.240 Sum_probs=300.8
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHH-HHHHHHHHHcccch----h-hhhhhhh------c-
Q 007523 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKA-AYAWKRIIELRLSE----E-ASMLRSS------V- 92 (600)
Q Consensus 26 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~----~-g~~~~~~------~- 92 (600)
.-++||.++++++++|+.++.... ....+....+. .++|+.+.+.||.+ + ||.+.++ +
T Consensus 29 ~l~~e~~~l~~~~r~~~~~~~~~~---------~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~e 99 (403)
T 3sf6_A 29 VLSAEEREIRDTVRSVVQRRIKPH---------IASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACL 99 (403)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCHHHHHHHHHHTTCSSTTSCSTTCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcChh---------HHHHHhcCCCCHHHHHHHHHHCCCCcccchhhCCCCCCHHHHHHHHH
Confidence 346899999999999998732110 11122222234 68899999999987 1 4432211 1
Q ss_pred -----cCc--chhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007523 93 -----DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 165 (600)
Q Consensus 93 -----~~~--~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLnt 165 (600)
+.+ ..+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 100 ela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln- 176 (403)
T 3sf6_A 100 ELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRS--GDDWILT- 176 (403)
T ss_dssp HHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-
T ss_pred HHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEE--CCEEEEE-
Confidence 112 224567667788999999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecc
Q 007523 166 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 245 (600)
Q Consensus 166 p~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 245 (600)
|+|+||+| +..||+++|+|+++ .|+++|+|| .+.|||++.+.|+++| +++++++.|.|+|
T Consensus 177 ----G~K~~is~-a~~Ad~~~v~ar~~-----~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~fd~ 236 (403)
T 3sf6_A 177 ----GTKMWITN-GSVADVAVVWARTD-----EGIRGFVVP-------TDTPGFTANTIKSKMS---LRASVTSELVLDG 236 (403)
T ss_dssp ----EEEEEEET-GGGCSEEEEEEEET-----TEEEEEEEE-------TTSTTEEEEECCSCSS---CTTSCEEEEEEEE
T ss_pred ----EEEEeecC-CcccCEEEEEEEeC-----CceEEEEEE-------CCCCCeEecCCCCccC---CCCCceeEEEEcc
Confidence 99999999 99999999999974 369999999 7889999999999999 9999999999999
Q ss_pred eecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 007523 246 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 246 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~ 325 (600)
|+||.+++|+. |.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 237 v~Vp~~~~lg~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------pi~~ 296 (403)
T 3sf6_A 237 VRLPDSARLPG-------ATSLG------APLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDR-------PIGG 296 (403)
T ss_dssp EEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGG
T ss_pred EEEcHHHccCC-------ChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-------cchh
Confidence 99999999983 33332 5567788899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007523 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 405 (600)
||.+|++|++|.+.+++++.+++++++.++. +. +....++++|.++++.+.++++.|+|+|||+||++
T Consensus 297 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~ 364 (403)
T 3sf6_A 297 FQLTQQKLADMTLEYGKGFLLALHLGRQKDA-------GE-----LAPEQVSLGKLNNVREAIEIARTARTVLGASGITG 364 (403)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcCCeEccc
Confidence 9999999999999999999999999887763 11 23456889999999999999999999999999999
Q ss_pred CCChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 406 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 406 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++++++|||++...+++|++++++..+++.+++
T Consensus 365 ~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 398 (403)
T 3sf6_A 365 EYPVMRHANNLESVLTYEGTSEMHTLIIGQALTG 398 (403)
T ss_dssp TSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred cCcHHHHHhhcccceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999985
No 23
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=6.9e-54 Score=456.32 Aligned_cols=350 Identities=21% Similarity=0.266 Sum_probs=300.5
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h-hhhhhhh------c--
Q 007523 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E-ASMLRSS------V-- 92 (600)
Q Consensus 26 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~-g~~~~~~------~-- 92 (600)
.-++||.++++++++|+.++.. ......+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 25 ~l~~e~~~l~~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~ee 95 (399)
T 3swo_A 25 LLDQDERDIAATVRQFVDTRLK---------PNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACME 95 (399)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTH---------HHHHHHHHHTCCCTTHHHHHHHHTCTTTTSCSTTCCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC---------hhHHHHHhhCCCCHHHHHHHHHCCCCcCChhhhCCCCCCHHHHHHHHHH
Confidence 4568999999999999987321 011112222223467899999999987 1 4432211 1
Q ss_pred ----cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 93 ----DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 93 ----~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
+.+. .+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 171 (399)
T 3swo_A 96 LEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRD--GSDWILN-- 171 (399)
T ss_dssp HHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEe--CCEEEEE--
Confidence 1122 24466667788999999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+|++| +..||+++|+|+++ .|+++|+|| .+.|||++.+.|+++| +++++++.|.|+||
T Consensus 172 ---G~K~~vs~-a~~Ad~~~v~a~~~-----~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~fd~v 232 (399)
T 3swo_A 172 ---GTKMWITN-GNLADVATVWAQTD-----DGIRGFLVP-------TDTPGFTANEIHRKLS---LRASVTSELVLDNV 232 (399)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEBCT-----TSCEEEEEE-------TTSTTEEEEECCCBSS---CCSSCEEEEEEEEE
T ss_pred ---EEEEeECC-CCccCEEEEEEEeC-----CceEEEEEe-------CCCCCeEeecCcCccc---CCCCceeEEEEccE
Confidence 99999999 99999999999864 468999999 7889999999999999 99999999999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++||. |.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 233 ~Vp~~~~lg~-------~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~-------~i~~~ 292 (399)
T 3swo_A 233 RLPASAQLPL-------AEGLS------APLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDK-------PLSNY 292 (399)
T ss_dssp EECGGGBCTT-------CCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EEcHHHcCCC-------ChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCc-------chhhC
Confidence 9999999983 33332 5667788899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|++|.+.+++++.+++++++.++. + .+....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 293 q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~-----~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~ 360 (399)
T 3swo_A 293 QLTQEKLANMTVELGKGMLLAIHLGRIKDA-------E-----GVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLE 360 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCC
Confidence 999999999999999999999999887752 1 1235668899999999999999999999999999999
Q ss_pred CChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
++++++|||++...+++|++++++..+++.+++
T Consensus 361 ~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 393 (399)
T 3swo_A 361 YSPLRHANNLESVLTYEGTSEMHLLSIGKALTG 393 (399)
T ss_dssp STHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHhhcceeecCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999985
No 24
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.8e-53 Score=451.23 Aligned_cols=375 Identities=17% Similarity=0.207 Sum_probs=301.4
Q ss_pred CCHHHHHHHHcCChhhHHHHHHHHHHHhcCC--CCCCCccccccHH-----HHHHHHHHHHHHHHHHHHHcccch----h
Q 007523 16 FDVDEMKIVWAGSRHAFQVSDRIARLVASDP--AFRKDNRAMLSRK-----ELFKNTLRKAAYAWKRIIELRLSE----E 84 (600)
Q Consensus 16 f~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~G~~~----~ 84 (600)
++...|++ .-++||.++++++++|++++. .... ....+.. ..+. ......++|+.+.+.||.+ +
T Consensus 14 ~~~~~m~~--~~~~e~~~l~~~~r~f~~~~~~p~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gl~~l~~P~ 88 (428)
T 2wbi_A 14 IDTTGQLF--VQTRKGQEVLIKVKHFMKQHILPAEKE--VTEFYVQNENSVDKWG-KPLVIDKLKEMAKVEGLWNLFLPA 88 (428)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHTHHHHHHH--HHC----------CCS-CCHHHHHHHHHHHHTTCCSTTCHH
T ss_pred CCCccCCC--CCCHHHHHHHHHHHHHHHhhCCchhcc--hhHHhhhccccccccC-CcccHHHHHHHHHHCCCCeecCCC
Confidence 56666765 446899999999999998752 1000 0000000 0000 0023467899999999987 3
Q ss_pred hhhhhhh------cc----C---cchhhhh--hhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCCCCC
Q 007523 85 ASMLRSS------VD----E---PAFTDLH--WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGL 148 (600)
Q Consensus 85 g~~~~~~------~~----~---~~~~~~h--~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~-~Gsd~~~~ 148 (600)
|.+.+. .+ . +.++.++ ..++...|..+|+++||++|||++++|+.++|+++|||+ +|||+.++
T Consensus 89 -G~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~ 167 (428)
T 2wbi_A 89 -VSGLSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNI 167 (428)
T ss_dssp -HHCCCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGC
T ss_pred -CCCCCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccc
Confidence 221111 11 1 1122222 224566888999999999999999999999999999999 99999999
Q ss_pred ceEEEEeCCCCeEEEecCCCCccccccCCCCCC--ccEEEEEEEEecCC--CCCceEEEEEeeccCCCCCCCCCeEEecc
Q 007523 149 ETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDI 224 (600)
Q Consensus 149 ~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~--A~~~vV~A~~~~~~--~~~g~~~flV~~rd~~~~~~~pGv~i~~~ 224 (600)
+|+|+++ +|+|+|| |+|+|||| +.. ||+++|+|+++.++ +..|+++|+|| .+.|||++.+.
T Consensus 168 ~t~A~~~--~~g~~ln-----G~K~~is~-a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~-------~~~pGv~v~~~ 232 (428)
T 2wbi_A 168 ECSIQRD--EDSYVIN-----GKKWWSSG-AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVP-------MNTPGVKIIRP 232 (428)
T ss_dssp CCEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCCTTSCGGGCEEEEEEE-------TTSTTEEEEEE
T ss_pred eEEEEEe--CCEEEEE-----eEEeccCC-CCCCcCCEEEEEEEeCCccCCCCCceEEEEEE-------CCCCcEEecCC
Confidence 9999998 7899999 99999999 877 99999999986542 34689999999 78899999999
Q ss_pred CCccCCCCcCCcc---cceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 225 GMKFGNGAYNTMD---NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCI 301 (600)
Q Consensus 225 ~~~~G~~~~~~~~---~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~ 301 (600)
|+++| +++++ +++|.|+||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.
T Consensus 233 ~~~~G---~~~~~~~~~~~v~fddv~VP~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~ 297 (428)
T 2wbi_A 233 LSVFG---YTDNFHGGHFEIHFNQVRVPATNLILG------EGRGFE------ISQGRLGPGRIHHCMRTVGLAERALQI 297 (428)
T ss_dssp CCBTT---BCCGGGCCEEEEEEEEEEEEGGGBCSC------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc---cCCCCCCCeEEEEeCceEECHHHhcCC------ccchHH------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999 99985 8999999999999999984 455443 455677889999999999999999999
Q ss_pred HHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHH
Q 007523 302 ATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKS 381 (600)
Q Consensus 302 a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~ 381 (600)
+++|+++|+|||+ ||++||.+|++|++|.+.+++++.+++++++.+++.- ..+....++++|+
T Consensus 298 a~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~g----------~~~~~~~~~~aK~ 360 (428)
T 2wbi_A 298 MCERATQRIAFKK-------KLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG----------SAGAKKEIAMIKV 360 (428)
T ss_dssp HHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHTHHHHHHHHH
T ss_pred HHHHHhhCcccCC-------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CcchHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999988876410 0134567899999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHHHHHH
Q 007523 382 LTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 443 (600)
Q Consensus 382 ~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~~~~~ 443 (600)
++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++.++++.+|+.+++
T Consensus 361 ~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~ 422 (428)
T 2wbi_A 361 AAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQAK 422 (428)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999988754
No 25
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=1.2e-53 Score=452.78 Aligned_cols=352 Identities=21% Similarity=0.221 Sum_probs=292.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c--
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V-- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~-- 92 (600)
-++||.++++++++|+.+..... ....+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 16 ~~~~~~~l~~~~r~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~ee 86 (387)
T 3nf4_A 16 PSQEAAELIELTREIADKVLDPI---------VDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEE 86 (387)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTT---------HHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCcc---------HHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHH
Confidence 35899999999999998632110 1112222234467899999999987 2 4432211 1
Q ss_pred ----cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 93 ----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 93 ----~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
+.+.+ +.+|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 87 l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-- 161 (387)
T 3nf4_A 87 IAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPT--DGGYVIN-- 161 (387)
T ss_dssp HHTTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE--
T ss_pred HHHhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEe--CCEEEEE--
Confidence 11222 34454 6777899999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+|++| +..||+++|+|++. ++..|+++|+|| .+.|||++.+.|+++| +++++++.|.|+||
T Consensus 162 ---G~K~~~s~-~~~Ad~~~v~a~~~--~~~~g~~~flV~-------~~~pGv~~~~~~~~~G---~~~~~~~~v~fd~v 225 (387)
T 3nf4_A 162 ---GSKSWITH-GGKADFYTLFARTG--EGSRGVSCFLVP-------ADQPGLSFGKPEEKMG---LHAVPTTSAFYDNA 225 (387)
T ss_dssp ---EEEEEEET-TTTCSEEEEEEECC----CCCEEEEEEE-------TTCTTEEECCCCCBSS---CCSSCEEEEEEEEE
T ss_pred ---eEEecccC-CcccCEEEEEEEeC--CCCCceEEEEEE-------CCCCCeEecCcccccc---cCCCCeeEEEEeeE
Confidence 99999999 89999999999976 345689999999 7889999999999999 99999999999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 226 ~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~ 286 (387)
T 3nf4_A 226 RIDADRRIGE------EGQGLQ------IAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGR-------KIIDH 286 (387)
T ss_dssp EEEGGGEESS------TTCHHH------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CTTTC
T ss_pred EecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCC-------chhhh
Confidence 9999999984 555443 5566778899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|++|.+.+++++.+++++++.++. + .+....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 287 q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------~-----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~ 354 (387)
T 3nf4_A 287 QGLGFLLADMAAAVATARATYLDAARRRDQ-------G-----RPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRD 354 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcHhhcCC
Confidence 999999999999999999999999877652 1 1234568899999999999999999999999999999
Q ss_pred CChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
++++++|||++...+++|++++++..|++.+++
T Consensus 355 ~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~ 387 (387)
T 3nf4_A 355 YRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp SSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred CcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998753
No 26
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=9.6e-53 Score=445.53 Aligned_cols=350 Identities=21% Similarity=0.253 Sum_probs=293.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c--
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V-- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~-- 92 (600)
-++||.++++++++|+.+... + .....+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 11 ~~~~~~~l~~~~r~~~~~~~~----~-----~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 81 (385)
T 2eba_A 11 LTPEEKEVQKAARRFLEKEAL----P-----HIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYE 81 (385)
T ss_dssp SCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCC----c-----cHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHH
Confidence 358999999999999975211 0 01111111123356899999999987 2 4432211 1
Q ss_pred ----cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCC-CCCceEEEEeCCCCeEEEec
Q 007523 93 ----DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNV-QGLETTATFDPQTDEFVIHS 165 (600)
Q Consensus 93 ----~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~-~~~~TtA~~d~~~~~~vLnt 165 (600)
+.+. .+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+ .+++|+|+++ +|+|+||
T Consensus 82 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~--~~g~~ln- 158 (385)
T 2eba_A 82 LERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARRE--GDTWVLN- 158 (385)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC----CEEEEE-
T ss_pred HHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEe--CCEEEEE-
Confidence 1122 3456666778889999999999999999999999999999999999999 9999999988 7899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecc
Q 007523 166 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 245 (600)
Q Consensus 166 p~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 245 (600)
|+|+|+|| +..||+++|+|+++ ++ . +++|+|| .+.|||++.+.|+++| +++++++.|.|+|
T Consensus 159 ----G~K~~~s~-~~~Ad~~~v~a~~~-~g--~-~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~f~~ 219 (385)
T 2eba_A 159 ----GTKMWITN-GNLAHLAVIWAKDE-GG--E-VLGFLVP-------TDTPGFQAREVKRKMS---LRASVTSELVLEE 219 (385)
T ss_dssp ----EEEEEEET-TTTCSEEEEEEECC-------EEEEEEE-------TTSTTEEEEECCSBSS---SCSSCEEEEEEEE
T ss_pred ----eeeeccCC-CcccCEEEEEEEeC-CC--c-EEEEEEe-------CCCCCeEecccccccc---cccCceeEEEEcc
Confidence 99999999 99999999999975 22 2 8899999 7789999999999999 9999999999999
Q ss_pred eecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 007523 246 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 246 v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~ 325 (600)
|+||.+++| . .|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 220 v~Vp~~~~l-~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 279 (385)
T 2eba_A 220 VRVPESLRL-P------KALGLK------APLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGE-------PLAK 279 (385)
T ss_dssp EEEEGGGBC-T------TCCSTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGG
T ss_pred EEEcHHHcc-C------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCe-------eHHh
Confidence 999999999 3 343332 4556778899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007523 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~ 405 (600)
||.+|++|++|.+.+++++.+++++++.+++ +. .....++++|.++++.+.++++.|+|+|||+||++
T Consensus 280 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~-----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~ 347 (385)
T 2eba_A 280 KQLVQAKLAEMLAWHTEGLLLAWRLARLKDE-------GK-----LTPAQVSLAKRQNVWKALQAARMARDILGGSGITL 347 (385)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 9999999999999999999999999887652 11 23456789999999999999999999999999999
Q ss_pred CCChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 406 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 406 ~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
+++++++|||++...+++|++++++..+++.+++
T Consensus 348 ~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg 381 (385)
T 2eba_A 348 EYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG 381 (385)
T ss_dssp TSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred cChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 27
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=6e-52 Score=440.49 Aligned_cols=353 Identities=20% Similarity=0.243 Sum_probs=295.9
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch----h-hhhhhhh------c--
Q 007523 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----E-ASMLRSS------V-- 92 (600)
Q Consensus 26 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~----~-g~~~~~~------~-- 92 (600)
.-++||.++++++++|+.+... + .....+....+..++|+.+.+.||.+ + ||.+.++ +
T Consensus 13 ~~~~e~~~l~~~~r~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~ee 83 (392)
T 1siq_A 13 QLTTDEILIRDTFRTYCQERLM----P-----RILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARE 83 (392)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcC----c-----chHHHHhhCCCCHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHH
Confidence 3468999999999999976311 0 01111111223457899999999986 1 3322111 1
Q ss_pred ----cCcc--hhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007523 93 ----DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 166 (600)
Q Consensus 93 ----~~~~--~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp 166 (600)
+.+. .+.+|..++...|..+|+++|+++|||++++|+.++|+++|||++|||+.+++|+|++++++|+|+||
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~ln-- 161 (392)
T 1siq_A 84 LERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN-- 161 (392)
T ss_dssp HHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEE--
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEE--
Confidence 1122 23455556677889999999999999999999999999999999999999999999998667899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecce
Q 007523 167 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 246 (600)
Q Consensus 167 ~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v 246 (600)
|+|+|+|| +..||+++|+|+++. .++++|+|| .+.|||++.+.|+++| +++++++.|.|+||
T Consensus 162 ---G~K~~vs~-~~~Ad~~~v~a~~~~----g~~~~flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v 223 (392)
T 1siq_A 162 ---GTKTWITN-SPMADLFVVWARCED----GCIRGFLLE-------KGMRGLSAPRIQGKFS---LRASATGMIIMDGV 223 (392)
T ss_dssp ---EEEEEEET-GGGCSEEEEEEEETT----SCEEEEEEE-------TTCTTEECCBCCCCSS---STTSCEEEEEEEEE
T ss_pred ---EEEEeecC-CcccCEEEEEEEECC----CCEEEEEEe-------CCCCCeEecccccccc---ccCCceEEEEEccE
Confidence 99999999 899999999999742 248899999 7789999999999999 99999999999999
Q ss_pred ecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccch
Q 007523 247 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 ~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~ 326 (600)
+||.+++|+. .+| +. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 224 ~Vp~~~~lg~-----~~g--~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~ 283 (392)
T 1siq_A 224 EVPEENVLPG-----ASS--LG------GPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGV-------PLARN 283 (392)
T ss_dssp EEEGGGBCTT-----CCS--SH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGS
T ss_pred EECHHHcCCc-----ccC--HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCc-------chhhh
Confidence 9999999974 122 21 4456777899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007523 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~ 406 (600)
|.+|++|++|.+.+++++.+++++++.++. +. .....++++|.++++.+.++++.|+|+|||+||+++
T Consensus 284 q~vq~~la~~~~~~~~ar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~q~~Gg~g~~~~ 351 (392)
T 1siq_A 284 QLIQKKLADMLTEITLGLHACLQLGRLKDQ-------DK-----AAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDE 351 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC
Confidence 999999999999999999999999877652 11 124467899999999999999999999999999999
Q ss_pred CChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
++++++|||++...+++|++++++..+++.+++
T Consensus 352 ~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llg 384 (392)
T 1siq_A 352 YHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 384 (392)
T ss_dssp GSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred CcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999874
No 28
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=2.4e-52 Score=444.44 Aligned_cols=352 Identities=18% Similarity=0.240 Sum_probs=300.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHH-HHHHHHHHHcccch-----h-hhhhh--hhc-----
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKA-AYAWKRIIELRLSE-----E-ASMLR--SSV----- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~-----~-g~~~~--~~~----- 92 (600)
-++||.++++++++|+.+... . .....+....+. .++|+.+.+.||.+ + ||.+. ...
T Consensus 5 ~~~~~~~l~~~~r~~~~~~~~--~-------~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v 75 (397)
T 3mpi_A 5 LSKELQMLQKEVRNFVNKKIV--P-------FADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIV 75 (397)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT--T-------THHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCC--h-------hHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHH
Confidence 468999999999999986421 1 111222222334 67899999999987 2 44333 221
Q ss_pred -------cCcc--hhhhhhhhhHH-HHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEE
Q 007523 93 -------DEPA--FTDLHWGMFVP-AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFV 162 (600)
Q Consensus 93 -------~~~~--~~~~h~~l~~~-~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~v 162 (600)
+.+. .+.+| .++.. .|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+
T Consensus 76 ~eela~~~~~~~~~~~~~-~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ 152 (397)
T 3mpi_A 76 TEEIARGSSALRVQLNME-VLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDK--GDHWL 152 (397)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEEC--SSEEE
T ss_pred HHHHHhhCchHHHHHHHH-HHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEe--CCEEE
Confidence 1122 23445 45566 899999999999999999999999999999999999999999999998 78999
Q ss_pred EecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEE-eeccCCCCCCCCCeEEeccCCccCCCCcCCcccceE
Q 007523 163 IHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIV-QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 241 (600)
Q Consensus 163 Lntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV-~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v 241 (600)
|| |+|+|+|| +..||+++|+|+++.+++..|+.+|+| | .+.|||++ +.|+++| +++++++.|
T Consensus 153 ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~~-------~~~~Gv~v-~~~~~~G---~~~~~~~~v 215 (397)
T 3mpi_A 153 LN-----GSKTWISN-AAQADVLIYYAYTDKAAGSRGLSAFVIEP-------RNFPGIKT-SNLEKLG---SHASPTGEL 215 (397)
T ss_dssp EE-----EEEEEEET-TTTCSSEEEEEESCGGGGGGSEEEEEECT-------TTSTTEEE-EECCCSS---CTTSCEEEE
T ss_pred EE-----EEEEeeCC-CcccCEEEEEEEcCCCCCCCceEEEEEEc-------CCCCCeEe-ccCcccc---CcCCceeEE
Confidence 99 99999999 999999999999876555678999999 8 78899999 8999999 999999999
Q ss_pred EecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 007523 242 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 321 (600)
Q Consensus 242 ~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~ 321 (600)
.|+||+||.+++|+. .|.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 216 ~fddv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~------- 276 (397)
T 3mpi_A 216 FLDNVKVPKENILGK------PGDGAR------IVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGK------- 276 (397)
T ss_dssp EEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------
T ss_pred EEeeEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-------
Confidence 999999999999984 455443 5667788899999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 007523 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 401 (600)
Q Consensus 322 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~ 401 (600)
||++||.+|++|++|.+.+++++++++++++.+++ +. .+....++++|.++++.+.++++.|+|+|||+
T Consensus 277 ~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~ 345 (397)
T 3mpi_A 277 PIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDE-------GR----LNNGLDVAMAKYAAGEAVSKCANYAMRILGAY 345 (397)
T ss_dssp EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----TEEHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CccHHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 99999999999999999999999999999887652 11 23456788999999999999999999999999
Q ss_pred ccccCCChhhhhcccccccccccchHHHHHHHH-HHH
Q 007523 402 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA-RFL 437 (600)
Q Consensus 402 Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia-~~l 437 (600)
||+++++++++|||++...+++|++++++..|+ +.+
T Consensus 346 g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l 382 (397)
T 3mpi_A 346 GYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382 (397)
T ss_dssp GGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred eecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 766
No 29
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.1e-52 Score=435.76 Aligned_cols=318 Identities=16% Similarity=0.171 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHcccch-----h-hhhhhhh------c------cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhc
Q 007523 68 KAAYAWKRIIELRLSE-----E-ASMLRSS------V------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 127 (600)
Q Consensus 68 ~~~~~~~~~~~~G~~~-----~-g~~~~~~------~------~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~ 127 (600)
+..++|+.+.+.||.+ + ||.+.++ + +.+.+ +.+|..++...|. +|+++||++|||++++
T Consensus 25 ~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~~ 103 (366)
T 1r2j_A 25 LPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELTS 103 (366)
T ss_dssp CCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHhC
Confidence 3467899999999987 2 4432211 1 11222 3455556778888 9999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEee
Q 007523 128 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 207 (600)
Q Consensus 128 g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~ 207 (600)
|+ ++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++++ + |+++|+||
T Consensus 104 G~-~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~--~--g~~~flV~- 169 (366)
T 1r2j_A 104 GK-LAAVGFSERQAGSDLSAMRTRVRLD--GDTAVVD-----GHKVWTTA-AAYADHLVVFGLQED--G--SGAVVVVP- 169 (366)
T ss_dssp C--CEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEETT-TTTCSEEEEEEBCSS--S--CCEEEEEE-
T ss_pred CC-eeEEEeCCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEecccC-CcccCEEEEEEEeCC--C--ceEEEEEE-
Confidence 99 9999999999999999999999998 7899999 99999999 999999999998743 2 78999999
Q ss_pred ccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHH-HHHHHHHHHH
Q 007523 208 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLL-YGTMVYVRQT 286 (600)
Q Consensus 208 rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~-~~~l~~~r~~ 286 (600)
.+.|||++.+.|+++| +++++++.|.|+||+||.+++|+. .|.++. .. ...+...|+.
T Consensus 170 ------~~~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~------~~~~~~l~~~r~~ 228 (366)
T 1r2j_A 170 ------ADTPGVRVERVPKPSG---CRAAGHADLHLDQVRVPAGAVLAG------SGASLP------MLVAASLAYGRKS 228 (366)
T ss_dssp ------TTSTTEEEEECSSCSS---STTSCCEEEEEEEEEEEGGGBCTT------TTSCTT------TTTHHHHHHHHHH
T ss_pred ------CCCCCeEecCCcCCcc---CCCCCeeEEEEeeEEEcHHHcCCC------CCccHH------HHHHHHhhHHHHH
Confidence 7789999999999999 999999999999999999999984 444443 44 5677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007523 287 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 366 (600)
Q Consensus 287 ~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 366 (600)
+++.++|+++++++.+++|+++|+|||+ ||++||.+|++|++|.+.+++++++++++++.+++ +.
T Consensus 229 ~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~-------g~- 293 (366)
T 1r2j_A 229 VAWGCVGILRACRTAAVAHARTREQFGR-------PLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDE-------GS- 293 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-
Confidence 9999999999999999999999999999 99999999999999999999999999999877652 10
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHHH
Q 007523 367 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 367 ~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll~ 439 (600)
.+....++++|.++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..+++.+++
T Consensus 294 ---~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lg 363 (366)
T 1r2j_A 294 ---PEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA 363 (366)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhc
Confidence 1234568999999999999999999999999999999999999999999999999999999999998864
No 30
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=1.7e-50 Score=435.56 Aligned_cols=368 Identities=14% Similarity=0.141 Sum_probs=295.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcc-ccccHHHHHHHHHHHH--HHHHHHHHHcccch-----h-hhhhhhhc-----
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKA--AYAWKRIIELRLSE-----E-ASMLRSSV----- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~-----~-g~~~~~~~----- 92 (600)
-++||.++++++|+|++++........ ...+... ..+. .++|+.+.+.||.+ + ||.+.++.
T Consensus 7 ~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 81 (438)
T 3mkh_A 7 LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSP-----LRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL 81 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCH-----HHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCcHHHHHhhcccccc-----CcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 368999999999999988531100000 0000111 0222 67899999999988 2 44332211
Q ss_pred -c------Ccchhh-hhhhhhHHHHhcCCCHHHHHhHHHHHhcc--ceeeEEeccCCCCCC-----CCCCCceEEEEeCC
Q 007523 93 -D------EPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKM--EIIGCYAQTELGHGS-----NVQGLETTATFDPQ 157 (600)
Q Consensus 93 -~------~~~~~~-~h~~l~~~~i~~~gt~eq~~~~l~~i~~g--~~~~~~a~tE~~~Gs-----d~~~~~TtA~~d~~ 157 (600)
+ .+.++. .+..++...|..+|+++ +++|||++++| +.++|+++|||++|| |+.+++|+|+++
T Consensus 82 ~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~-- 158 (438)
T 3mkh_A 82 VEECYSVEPSAALTIFATGLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLE-- 158 (438)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEE--
T ss_pred HHHHHhhChhHHHHHHHhhHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEe--
Confidence 1 122211 12235566788899999 89999999996 589999999999998 689999999998
Q ss_pred CCeEEEecCCCCccccccCCCCC-----CccEEEEEEEEec------CCCCCceEEEEEeeccCCCCCCCCC-eEEeccC
Q 007523 158 TDEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARLIT------DGQDHGVNGFIVQLRSLEDHSPLPG-ITIGDIG 225 (600)
Q Consensus 158 ~~~~vLntp~~~G~K~~v~~~a~-----~A~~~vV~A~~~~------~~~~~g~~~flV~~rd~~~~~~~pG-v~i~~~~ 225 (600)
+|+|+|| |+|+|||| +. .||+++|+|++.. .++..|+++|+||..+.+ ...|| |++.+.|
T Consensus 159 g~g~~ln-----G~K~~is~-a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~--~~~pG~v~v~~~~ 230 (438)
T 3mkh_A 159 GDEWVIN-----GEKMWATN-CAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLD--RNGEGSFEVLRHV 230 (438)
T ss_dssp TTEEEEE-----EEECSCTT-TTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHH--HHCTTSEEEEECC
T ss_pred CCEEEEE-----eEEEEecC-CCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccc--cCCCCcEEecCcC
Confidence 8899999 99999999 66 8999999999853 123468999999932100 01388 9999999
Q ss_pred CccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 226 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 305 (600)
Q Consensus 226 ~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~y 305 (600)
+++| +++++++.|.|+||+||.+++||. .|.++. .....+..+|+.+++.++|+++++++.+++|
T Consensus 231 ~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~y 295 (438)
T 3mkh_A 231 ATPG---HTSVSGPHVRYTNVRVPTKNVLCP------AGQGAK------VAFGAFDGSAVLVGAMGVGLMRAAFDAALKF 295 (438)
T ss_dssp CCSS---CTTCCCCEEEEEEEEEEGGGEEEC------TTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcC---CcCCCceEEEECcEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999984 555443 5667788899999999999999999999999
Q ss_pred hhhccccC-CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHH
Q 007523 306 SAVRRQFG-SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 384 (600)
Q Consensus 306 a~~R~qfg-~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at 384 (600)
+++|+||| + ||++||.+|++|++|.+.+++++++++++++.+++ +. .........++++|++++
T Consensus 296 a~~R~~~g~~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-~~~~~~~~~~~~aK~~a~ 360 (438)
T 3mkh_A 296 AKEDNRGGAV-------PLLERQAFADLLSGVKIQTEAARALTWKAAHAMEN-------GP-GDYDARRELALAAKVFCS 360 (438)
T ss_dssp HHHCCTTCSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CS-SCHHHHHHHHHHHHHHHH
T ss_pred HhhcEeCCCe-------eccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-CcchhHHHHHHHHHHHHH
Confidence 99999999 7 99999999999999999999999999999887763 11 111223345778999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccch-HHHHHHHHHHHHHH
Q 007523 385 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMKT 440 (600)
Q Consensus 385 ~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll~~ 440 (600)
+.+.++++.|+|+|||+||+.+++++++|||++...+++|++ ++++.++++.+++.
T Consensus 361 e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~~~v~~~~i~r~ll~~ 417 (438)
T 3mkh_A 361 EAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKP 417 (438)
T ss_dssp HHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCTTTTHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCChHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999 99999999999974
No 31
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=2.6e-48 Score=418.56 Aligned_cols=363 Identities=15% Similarity=0.114 Sum_probs=289.6
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcc-ccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c-
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~- 92 (600)
-++||.++++++++|++++........ ...+..+.++ ...++|+.+.+.||.+ + ||.+.++ +
T Consensus 6 ~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~----~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 6 LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQ----ATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHH----TTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCC----ChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 358999999999999987421100000 0000111121 1167899999999987 1 4432211 1
Q ss_pred -----cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHh--ccceeeEEeccCCCCCC-----CCCCCceEEEEeCCC
Q 007523 93 -----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAY--KMEIIGCYAQTELGHGS-----NVQGLETTATFDPQT 158 (600)
Q Consensus 93 -----~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~--~g~~~~~~a~tE~~~Gs-----d~~~~~TtA~~d~~~ 158 (600)
+.+.+ +.+| .++...|..+|+++||++|||+++ +|+.++|+++|||++|| |+.+++|+|+++ +
T Consensus 82 ela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~--~ 158 (439)
T 2c12_A 82 ELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKV--G 158 (439)
T ss_dssp HHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEE--T
T ss_pred HHHhhChHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEc--C
Confidence 11222 2344 356677899999999999999999 69999999999999998 588999999998 7
Q ss_pred CeEEEecCCCCccccccCCCCC-----CccEEEEEEEE-e----cC----CCCCceEEEEEeeccCCCCCCCC------C
Q 007523 159 DEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARL-I----TD----GQDHGVNGFIVQLRSLEDHSPLP------G 218 (600)
Q Consensus 159 ~~~vLntp~~~G~K~~v~~~a~-----~A~~~vV~A~~-~----~~----~~~~g~~~flV~~rd~~~~~~~p------G 218 (600)
|+|+|| |+|+|||| +. .||+++|+|++ + ++ ++..|+++|+||. +.| |
T Consensus 159 ~g~~ln-----G~K~~is~-~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~-------~~pGv~~~~G 225 (439)
T 2c12_A 159 NEWVIS-----GEKLWPSN-SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTR-------ETIANNKKDA 225 (439)
T ss_dssp TEEEEE-----EEEECCTT-TTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECH-------HHHHTSCGGG
T ss_pred CEEEEE-----eEEEeecC-CCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEEC-------CCCcccCCCc
Confidence 899999 99999999 76 89999999998 5 32 3446899999993 455 8
Q ss_pred eEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 219 ITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRA 298 (600)
Q Consensus 219 v~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~a 298 (600)
|++.+.|+++| +++++++.|.|+||+||.+++|+. .|.+... .....+...|+.+++.++|+++++
T Consensus 226 v~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~~~g~~~-----~~~~~l~~~r~~~aa~~~G~a~~a 291 (439)
T 2c12_A 226 YQILGEPELAG---HITTSGPHTRFTEFHVPHENLLCT------PGLKAQG-----LVETAFAMSAALVGAMAIGTARAA 291 (439)
T ss_dssp EEEEECCCBSS---CTTCCCCEEEEEEEEEEGGGBCSC------TTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeCCcccccc---cCCCCceEEEEccEEecHHHcCCC------CCccHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999984 4443210 234667789999999999999999
Q ss_pred HHHHHHHhhh-ccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHH
Q 007523 299 VCIATRYSAV-RRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTA 377 (600)
Q Consensus 299 l~~a~~ya~~-R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 377 (600)
++.+++|+++ |+|||+ ||++||.+|++|++|.+.+++++++++++++.++. +.. ........++
T Consensus 292 l~~a~~ya~~rr~~~G~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~~-~~~~~~~~~~ 356 (439)
T 2c12_A 292 FEEALVFAKSDTRGGSK-------HIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLED-------EAL-EWKVKLEMAM 356 (439)
T ss_dssp HHHHHHHHHHCCTTSSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------TTS-CHHHHHHHHH
T ss_pred HHHHHHHHhhceeeCCe-------ehhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCc-cchhhHHHHH
Confidence 9999999996 788998 99999999999999999999999999999877641 111 1111344688
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccch-HHHHHHHHHHHH
Q 007523 378 GLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLM 438 (600)
Q Consensus 378 ~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll 438 (600)
++|.++++.+.++++.|+|+|||+||+++++++++|||++...+++|++ ++++.++++.+.
T Consensus 357 ~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~G~~~~~~~~~i~~~l~ 418 (439)
T 2c12_A 357 QTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA 418 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcceeecCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988 699999887553
No 32
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=9.9e-48 Score=408.71 Aligned_cols=357 Identities=15% Similarity=0.067 Sum_probs=282.6
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhh-hhhc-------
Q 007523 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASML-RSSV------- 92 (600)
Q Consensus 27 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~-~~~~------- 92 (600)
-++||.++++.+++|+.. +. ......+....+..++|+.+.+.||.+ + ||.+ ..+.
T Consensus 9 lt~e~~~~~~~~r~~~~~---~~-------~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~e 78 (395)
T 3mxl_A 9 LTPAGRTVVDLLAGVIPR---IS-------AEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALM 78 (395)
T ss_dssp CSHHHHHHHHHHTTTHHH---HH-------HHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH---Hh-------hchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHH
Confidence 368999999999998853 11 112223333334567899999999987 1 4444 2211
Q ss_pred -----cCcch--hhhhhhhhHHHH--hcCCCHHHH---HhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCe
Q 007523 93 -----DEPAF--TDLHWGMFVPAI--KGQGTDEQH---QKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 160 (600)
Q Consensus 93 -----~~~~~--~~~h~~l~~~~i--~~~gt~eq~---~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~ 160 (600)
+.+.+ +.+|..++...+ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..++|+ + +|+
T Consensus 79 el~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t~---~--~~g 151 (395)
T 3mxl_A 79 RLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHSD---G--AGG 151 (395)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEEC---S--SSC
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEEe---c--CCE
Confidence 11222 344544444443 356999999 9999999999999999999998763 334433 3 789
Q ss_pred EEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccce
Q 007523 161 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 240 (600)
Q Consensus 161 ~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~ 240 (600)
|+|| |+|+|||| +..||+++|+|+++++++..|+++|+|| .+.|||++.+.|+++| ++++++++
T Consensus 152 ~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~~~~~g~~~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~ 215 (395)
T 3mxl_A 152 WLLS-----GRKVLVSM-APIATHFFVHAQRRDDDGSVFLAVPVVH-------RDAPGLTVLDNWDGLG---MRASGTLE 215 (395)
T ss_dssp EEEE-----EEEEEETT-GGGCSEECCCEEEECTTSCEEEECCCEE-------TTCTTEEEECCCCBSS---CTTSCCEE
T ss_pred EEEe-----eEEEEecC-ccccCEEEEEEEeCCCCCCCceEEEEEE-------CCCCceEeCCCchhcC---CCCCCcce
Confidence 9999 99999999 9999999999999876666789999999 7789999999999999 99999999
Q ss_pred EEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 007523 241 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 320 (600)
Q Consensus 241 v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e 320 (600)
|.|+||+||.+++|+.. +.|.+.. .....+...|+.+++.++|+++++++.+++|++ |+
T Consensus 216 v~f~~v~Vp~~~~lg~~----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r------ 274 (395)
T 3mxl_A 216 VVFDRCPVRADELLERG----PVGARRD------AVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GR------ 274 (395)
T ss_dssp EEEEEEEECGGGCCEEE----ESSCCCT------THHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TT------
T ss_pred EEEcceEcCHHHhcCCC----CCCccHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CC------
Confidence 99999999999999831 1343332 233334558889999999999999999999998 45
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 007523 321 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTTTATADGIEECRKLCG 399 (600)
Q Consensus 321 ~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~K~~at~~a~~~~~~~~q~~G 399 (600)
||++||.+|++|++|.+.+++++.+++++++.++....... .+... .......++++|.++++.+.++++.|+|+||
T Consensus 275 -~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~G 352 (395)
T 3mxl_A 275 -GGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDLS-GDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVG 352 (395)
T ss_dssp -CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999888775322110 11110 1123456788999999999999999999999
Q ss_pred ccccccCCChhhhhccccccc-ccccchHHHHHHHHHHHHH
Q 007523 400 GHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 400 g~Gy~~~~~l~~~~rd~~~~~-~~~G~~~vl~~~ia~~ll~ 439 (600)
|+||+++++++++|||++... +++|++++++.++++.+|+
T Consensus 353 g~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~Lg 393 (395)
T 3mxl_A 353 GLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALG 393 (395)
T ss_dssp GGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHSC
T ss_pred hHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999 9999999999999999874
No 33
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=6.7e-46 Score=399.80 Aligned_cols=365 Identities=13% Similarity=0.068 Sum_probs=283.5
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhh-h
Q 007523 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASML-R 89 (600)
Q Consensus 17 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~-~ 89 (600)
++.+|++ .-++||.++++.+++|+.. +. ......+....+..++|+.+.+.||.+ + ||.+ .
T Consensus 12 ~~~~m~~--~lt~e~~~l~~~~r~~~~~---~~-------~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~ 79 (439)
T 3m9v_A 12 STTGLYA--PVTPAGRVLLDRLAAHLPR---IR-------STAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVD 79 (439)
T ss_dssp CCSTTSS--CSSHHHHHHHHHHHTTHHH---HH-------HHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCC
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHH---Hh-------hhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCC
Confidence 5556655 3458999999999999854 11 112222333334567899999999987 2 4433 2
Q ss_pred hhc------c------Ccch--hhhhhhhhHHHH--hcCCCHHH---HHhHHHHHhccceeeEEeccCCCCCCCCCCCce
Q 007523 90 SSV------D------EPAF--TDLHWGMFVPAI--KGQGTDEQ---HQKWLPLAYKMEIIGCYAQTELGHGSNVQGLET 150 (600)
Q Consensus 90 ~~~------~------~~~~--~~~h~~l~~~~i--~~~gt~eq---~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~T 150 (600)
... + .+.+ +.+|..++...+ ..+|+++| |++|||++.+|++++|+++|||++ ++..++|
T Consensus 80 ~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t 157 (439)
T 3m9v_A 80 RLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP 157 (439)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE
T ss_pred CHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee
Confidence 111 1 1222 345544444443 46699999 899999999999999999999985 4444544
Q ss_pred EEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCC
Q 007523 151 TATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 230 (600)
Q Consensus 151 tA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~ 230 (600)
+ + +|+|+|| |+|+|+|| +.+||+++|+|+++++++..|+++|+|| .+.|||++.+.|+++|
T Consensus 158 ~---~--~~g~vln-----G~K~~~s~-a~~Ad~~~v~art~~~~~~~g~~~flVp-------~~~pGv~i~~~~~~~G- 218 (439)
T 3m9v_A 158 D---G--AGGWLLS-----GRKTLVSM-APVGTHFVINARTDGTDGPPRLASPVVT-------RDTPGFTVLDNWDGLG- 218 (439)
T ss_dssp C---S--SSCEEEE-----EEEEEETT-GGGCSEEEECEEECC--CCCCEEEEEEE-------TTCTTEEECCCCCCSS-
T ss_pred c---c--CCEEEEE-----eEEEeecC-ccccCEEEEEEEecCCCCCceeEEEEEE-------CCCCCeEECCCcccCC-
Confidence 3 3 7899999 99999999 8999999999999766666789999999 7789999999999999
Q ss_pred CCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007523 231 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR 310 (600)
Q Consensus 231 ~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~ 310 (600)
++++++++|.|+||+||.+++|+.. +.|.+.. .....+..+|+.+++.++|+++++++.+++|++
T Consensus 219 --~~~~~~~~v~fddv~VP~~~~lg~~----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~--- 283 (439)
T 3m9v_A 219 --MRASGTVDIVFDDCPIPADHVLMRD----PVGARND------AVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE--- 283 (439)
T ss_dssp --CTTSCCEEEEEEEEEECGGGEEECC----C--CCCG------GGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH---
T ss_pred --cCCCCceeEEEeeeEcCHHHccCCC----CCCchHH------HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 9999999999999999999999831 1343332 222334458889999999999999999999998
Q ss_pred ccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-ChhhHHHHHHhHHHHHHHHHHH
Q 007523 311 QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS-TLPEAHACTAGLKSLTTTATAD 389 (600)
Q Consensus 311 qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~K~~at~~a~~ 389 (600)
|+ ||+++|.+|++|+++.+.+++++.+++++++.++....... .+.. ........++++|+++++.+.+
T Consensus 284 --~r-------~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~a~~~a~~ 353 (439)
T 3m9v_A 284 --RR-------PEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLS-GDMDERGRQMMRHFQCAKLAVNRLAPE 353 (439)
T ss_dssp --TC-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 44 79999999999999999999999999999887765322110 0000 0112345677899999999999
Q ss_pred HHHHHHHHhcccccccCCChhhhhccccccc-ccccchHHHHHHHHHHHHH
Q 007523 390 GIEECRKLCGGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 390 ~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~-~~~G~~~vl~~~ia~~ll~ 439 (600)
+++.|+|+|||+||+++++++++|||++... +++|++++++..+++.+|+
T Consensus 354 v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~lg 404 (439)
T 3m9v_A 354 IVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALG 404 (439)
T ss_dssp HHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 9999999999999999885
No 34
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=8.4e-46 Score=396.04 Aligned_cols=351 Identities=12% Similarity=-0.040 Sum_probs=276.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc---------
Q 007523 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV--------- 92 (600)
Q Consensus 28 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~--------- 92 (600)
++||.++++.+++|+.+ +.. .....+....+..++|+.+.+.||.+ + ||.+.++.
T Consensus 19 ~~~~~~l~~~~r~~~~~---~~~-------~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel 88 (414)
T 2or0_A 19 FQGMGRVLDRIEVVAEE---IRG-------QAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGV 88 (414)
T ss_dssp ----CHHHHHHHHTHHH---HHH-------HHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH---HHH-------hHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHH
Confidence 47888999999999864 110 11122222233457899999999987 2 44322111
Q ss_pred ---cCcch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007523 93 ---DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 167 (600)
Q Consensus 93 ---~~~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~ 167 (600)
+.+.+ +.+| .++...|..+|+++||++|+| +|+.++|+++| | +|+|+++ +|+|+||
T Consensus 89 a~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~--~~g~~ln--- 149 (414)
T 2or0_A 89 AALDGASGWVTGIV-GVHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPV--DGGYVLK--- 149 (414)
T ss_dssp HHHCHHHHHHHHHH-TTHHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEE--TTEEEEE---
T ss_pred HhhChHHHHHHHHH-HHHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEE--CCeEEEE---
Confidence 11322 3344 367888999999999999999 79999999998 4 6899998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEecCCCCC---ceEEEEEeeccCCCCCCCCCeEEe-ccCCccCCCCcCCcccceEEe
Q 007523 168 LTSSKWWPGGLGKVSTHAVVYARLITDGQDH---GVNGFIVQLRSLEDHSPLPGITIG-DIGMKFGNGAYNTMDNGVLRF 243 (600)
Q Consensus 168 ~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~---g~~~flV~~rd~~~~~~~pGv~i~-~~~~~~G~~~~~~~~~~~v~f 243 (600)
|+|+|+|| +..||+++|+|+++.+++.. |+++|+|| .+ ||++. +.|+++| +++++++.|.|
T Consensus 150 --G~K~~is~-a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~-------~~--gv~v~~~~~~~~G---~r~~~~~~v~f 214 (414)
T 2or0_A 150 --GRWSFSSG-TDHCQWAFLGAMVGDGEGGIATPSSLHVILP-------RT--DYQIVEDTWDVIG---LRGTGSKDLIV 214 (414)
T ss_dssp --EEEEEETT-GGGCSEEEEEEEECC-----CCCSEEEEEEE-------GG--GCEEETTCCCBSS---CGGGCCEEEEE
T ss_pred --eeEeccCC-CchhhEEEEEEEecCCCCCcccceeEEEEEE-------hh--hcEEecCCCcccc---CcccCCCcEEE
Confidence 99999999 89999999999986432333 89999999 33 89999 9999999 99999999999
Q ss_pred cceecCccccccccccccC--CC----ceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCC
Q 007523 244 EHVRIPRNQMLMRVSQVTR--EG----KYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF-GSKN 316 (600)
Q Consensus 244 ~~v~VP~~~lL~~~~~v~~--~g----~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qf-g~~~ 316 (600)
|||+||.+++|+....++. +| .+.. .....+...|+.+++.++|+++++++.+++|+++|+|| |+
T Consensus 215 d~v~VP~~~~lg~~~~~~g~~~g~~~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~-- 286 (414)
T 2or0_A 215 DGAFVPGYRTLNAAKVMDGRAQKEAGRPEPL------FNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQ-- 286 (414)
T ss_dssp EEEEEEGGGEEEHHHHHHSHHHHHHTCSCSG------GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSC--
T ss_pred ccEEecHHHeeccccccccCCCccccCCCcc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--
Confidence 9999999999984211100 11 0111 22344667899999999999999999999999999999 98
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007523 317 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 396 (600)
Q Consensus 317 ~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q 396 (600)
||+++|.+|++|++|.+.+++++++++++++.+++... .+.. ...+....++++|.++++.+.++++.|+|
T Consensus 287 -----~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~---~g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q 357 (414)
T 2or0_A 287 -----KIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKVD---AGKE-ITFEERAIGRRTQIAAAWRAVRAADEIFA 357 (414)
T ss_dssp -----BGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764321 1221 11245667899999999999999999999
Q ss_pred HhcccccccCCChhhhhccccccccccc-chHHHHHHHHHHHHH
Q 007523 397 LCGGHGYLCSSGLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 439 (600)
Q Consensus 397 ~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G-~~~vl~~~ia~~ll~ 439 (600)
+|||+||+++++++++|||++...+++| ++++++..+++.+|+
T Consensus 358 ~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia~~~lg 401 (414)
T 2or0_A 358 RAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASALTQLG 401 (414)
T ss_dssp TSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHHHHHTT
T ss_pred hhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHHHHHhC
Confidence 9999999999999999999999999999 999999999999874
No 35
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=1.9e-44 Score=383.19 Aligned_cols=350 Identities=13% Similarity=0.040 Sum_probs=276.0
Q ss_pred HHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhh------c------cC
Q 007523 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSS------V------DE 94 (600)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~------~------~~ 94 (600)
++++++++|+.. +.. . ....+....+..++|+.+.+.||.+ + ||.+.++ + +.
T Consensus 11 ~l~~~~~~~~~~---~~~----~---~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~ 80 (394)
T 2rfq_A 11 EVMQRLDALLPT---LRE----R---AQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACG 80 (394)
T ss_dssp HHHHHHHHHHHH---HHH----T---HHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---HHH----h---HHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhCh
Confidence 688999998863 111 0 1112222233467899999999987 1 4432211 1 11
Q ss_pred cch--hhhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccc
Q 007523 95 PAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 172 (600)
Q Consensus 95 ~~~--~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K 172 (600)
+.+ +.+| .++...|..+|+++|+++|+| +|+.++|+++| | +|+|+++ +|+|+|| |+|
T Consensus 81 ~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~--~~g~~ln-----G~K 139 (394)
T 2rfq_A 81 STGWVSSII-GVHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVV--DGGYTVN-----GAW 139 (394)
T ss_dssp HHHHHHHHH-HHHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEE--TTEEEEE-----EEE
T ss_pred hHHHHHHHH-HHHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEe--CCeEEEe-----eeE
Confidence 223 2344 367778999999999999998 79999999998 4 5899998 7899999 999
Q ss_pred cccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccc
Q 007523 173 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQ 252 (600)
Q Consensus 173 ~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~ 252 (600)
+|||| +.+||+++|+|+++.++++.|+++|+|| .+ ||++.+.|+++| +++++++.|.||||+||.++
T Consensus 140 ~~is~-a~~Ad~~~v~a~~~~~g~~~~~~~flV~-------~~--gv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~ 206 (394)
T 2rfq_A 140 AWSSG-CDHASWAVLGGPVIKDGRPVDFVSFLIP-------RE--DYRIDDVWNVVG---LRGTGSNTVVVEDVFVPTHR 206 (394)
T ss_dssp EEETT-GGGCSEEEEEEEEEETTEEEEEEEEEEE-------GG--GCEEECCCCBSS---CGGGCCEEEEEEEEEEEGGG
T ss_pred eccCC-CcccceEEEeeeecCCCCCCceeEEEEE-------hh--hcEEeCCccccc---cccCCCCceEEcceEcChHH
Confidence 99999 8999999999998544444589999999 33 899999999999 99999999999999999999
Q ss_pred cccccccccC--CCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccCCCCCCCCccccchH
Q 007523 253 MLMRVSQVTR--EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR---QFGSKNGGPETQVIDYK 327 (600)
Q Consensus 253 lL~~~~~v~~--~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~---qfg~~~~~~e~~i~~~q 327 (600)
+|+.....+. +|...... .. .....+...|+.+++.++|+++++++.+++|+++|+ |||+ ||++||
T Consensus 207 ~lg~~~~~~g~~~g~~~~~g-~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~-------~i~~~q 277 (394)
T 2rfq_A 207 VLSFKAMSNLTAPGLERNTA-PV-YKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGE-------KAKDDP 277 (394)
T ss_dssp EEEHHHHHTTCCGGGTTCCC-GG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC-------GGGSCH
T ss_pred hcccccccccCCCCcccCCC-cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCc-------ccccCH
Confidence 9974210000 11000000 00 222345678999999999999999999999999999 9999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007523 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~ 407 (600)
.+|++|++|.+.+++++++++++++.++.... .+.. ...+....++++|.++++.+.++++.|+|+|||+||++++
T Consensus 278 ~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~---~g~~-~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~ 353 (394)
T 2rfq_A 278 FAKVRIAEASSDIDAAWRQLSGNVADEYALLV---AGEE-VPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGT 353 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCC
Confidence 99999999999999999999999988764321 1221 1124566789999999999999999999999999999999
Q ss_pred Chhhhhccccccccccc-chHHHHHHHHHHHHH
Q 007523 408 GLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 439 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~~G-~~~vl~~~ia~~ll~ 439 (600)
+++++|||++...+++| ++++++..+++.+++
T Consensus 354 ~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg 386 (394)
T 2rfq_A 354 PLQRFWRDAHAGRVHAANDPERAYVMYGTGEFG 386 (394)
T ss_dssp HHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcccccCchhHHHHHHHHHhC
Confidence 99999999999999999 999999999999874
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1.5e-44 Score=395.27 Aligned_cols=322 Identities=18% Similarity=0.171 Sum_probs=271.1
Q ss_pred HHHHHHHHHcccch-h-------hhhhhh-----hc---c--CcchhhhhhhhhHHHHhcCCCHHHHHhHHHHHhccce-
Q 007523 70 AYAWKRIIELRLSE-E-------ASMLRS-----SV---D--EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI- 130 (600)
Q Consensus 70 ~~~~~~~~~~G~~~-~-------g~~~~~-----~~---~--~~~~~~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~- 130 (600)
.+.++.+.+.||.+ . |+.... ++ + ...|..+|. .++++|..+| ++|+++|+|++.+|+.
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~sge~~ 166 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLSDRYD 166 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTCSCCC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhCCCcc
Confidence 45677888988876 1 222111 11 1 133445554 4677888899 9999999999999998
Q ss_pred ------------eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEecCCCCC
Q 007523 131 ------------IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDH 198 (600)
Q Consensus 131 ------------~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A~~~~~~~~~ 198 (600)
++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+| +..||+++|+|+++ .
T Consensus 167 p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~-~g~y~Ln-----G~K~f~S--a~~Ad~~lVlArt~-----~ 233 (541)
T 3djl_A 167 SHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLE-DGSYRLV-----GHKWFFS--VPQSDAHLVLAQTA-----G 233 (541)
T ss_dssp CCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEEE-----EEEEEEE--CTTSSEEEEEEEET-----T
T ss_pred cccccccccccceeEEEeccCCcCCCcccceeEEEEcC-CCeEEEE-----EEEEeec--ccccCEEEEEEEEC-----C
Confidence 88999999999999999999999874 4789999 9999998 68999999999973 5
Q ss_pred ceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccccccccccccCCCceeecccchhHHHH
Q 007523 199 GVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 278 (600)
Q Consensus 199 g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~ 278 (600)
|+++|+||...++ ...+||++.+.|+++| ++++++++|.|+||+ ++++|. .|.++. .+..
T Consensus 234 Gis~flVp~~~p~--~~~~Gv~i~~~~~~~G---~rgt~s~~v~fddv~---~~llG~------~g~G~~------~~~~ 293 (541)
T 3djl_A 234 GLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASCEVEFQDAI---GWLLGL------EGEGIR------LILK 293 (541)
T ss_dssp EEEEEEEESBCTT--SCBCSEEEEEECCCSS---CTTSCEEEEEEEEEE---EEEESS------TTCHHH------HTHH
T ss_pred ceEEEEEecCCCC--CCcCCeEEeeccccCC---CcCCceeEEEEccce---eeeeec------CCchHH------HHHH
Confidence 8999999943221 1234999999999999 999999999999995 888884 565554 5667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007523 279 TMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT 358 (600)
Q Consensus 279 ~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~ 358 (600)
.+..+|+.+++.++|+++++++.+++|++.|+|||+ ||+++|.+|++|+++.+.+++++.+++++++.++..
T Consensus 294 ~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~- 365 (541)
T 3djl_A 294 MGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGN-------PLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRR- 365 (541)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 788999999999999999999999999999999999 999999999999999999999999999998877631
Q ss_pred HHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 359 QRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
.+.......+..++++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|++++++..++|.++
T Consensus 366 -----~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~ 440 (541)
T 3djl_A 366 -----ADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLN 440 (541)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred -----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHH
Confidence 110001125667899999999999999999999999999999999999999999999999999999999999987
Q ss_pred H
Q 007523 439 K 439 (600)
Q Consensus 439 ~ 439 (600)
+
T Consensus 441 ~ 441 (541)
T 3djl_A 441 K 441 (541)
T ss_dssp H
T ss_pred h
Confidence 5
No 37
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=1.1e-44 Score=388.31 Aligned_cols=351 Identities=13% Similarity=0.018 Sum_probs=276.7
Q ss_pred HHHHHHHHHHhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHcccch-----h-hhhhhhhc------------cC
Q 007523 33 QVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE-----E-ASMLRSSV------------DE 94 (600)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-----~-g~~~~~~~------------~~ 94 (600)
++++++++|+.. +.. .....+....+..++|+.+.+.||.+ + ||.+.++. +.
T Consensus 39 ~l~~~~r~~~~~---~~~-------~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~ 108 (422)
T 2jbr_A 39 SMLEKIQQILPQ---IAK-------NAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACA 108 (422)
T ss_dssp CHHHHHHHHHHH---HHH-------THHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH---HHH-------hhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCc
Confidence 578888888753 110 01112222223457899999999987 2 44322111 11
Q ss_pred cchh--hhhhhhhHHHHhcCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccc
Q 007523 95 PAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 172 (600)
Q Consensus 95 ~~~~--~~h~~l~~~~i~~~gt~eq~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K 172 (600)
+.++ ..| .++...|..+|+++||++|+|+ |+.++|+++| | +|+|+++ +|+|+|| |+|
T Consensus 109 ~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~--~~g~~ln-----G~K 167 (422)
T 2jbr_A 109 GTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEV--EGGIILN-----GDY 167 (422)
T ss_dssp HHHHHHHHH-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEE--TTEEEEE-----EEE
T ss_pred CHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEe--CCEEEEe-----eeE
Confidence 3232 334 4677889999999999999986 8999999988 4 5899998 7899999 999
Q ss_pred cccCCCCCCccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCCcCCcccceEEecceecCccc
Q 007523 173 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQ 252 (600)
Q Consensus 173 ~~v~~~a~~A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~ 252 (600)
+|+|| +..||+++|+|+++.+++..|+++|+|| .+ ||++.+.|+++| +++++++.|.|+||+||.++
T Consensus 168 ~~is~-a~~Ad~~~v~a~~~~~~g~~g~~~flV~-------~~--gv~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~ 234 (422)
T 2jbr_A 168 GWSSG-CDHAEYAIVGFNRFDADGNKIYSFGVIP-------RS--DYEIVDNWYAQA---IKSSGSKMLKLVNVFIPEYR 234 (422)
T ss_dssp EEETT-GGGCSEEEEEEEEECTTSCEEEEEEEEE-------GG--GCEEECCCCBSS---SGGGCCEEEEEEEEEEEGGG
T ss_pred eeecC-CccccEEEEEEEecCCCCCceeEEEEEE-------cC--ceEEeCCccccC---cCCCCCCcEEEeeEEecHHH
Confidence 99999 8999999999998754445689999999 33 899999999999 99999999999999999999
Q ss_pred ccccccccc--CCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCccccchHH
Q 007523 253 MLMRVSQVT--REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRR--QFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 253 lL~~~~~v~--~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~--qfg~~~~~~e~~i~~~q~ 328 (600)
+|+....++ ..|.+....... .....+...|+.+++.++|+++++++.+++|+++|+ |||+ ||++||.
T Consensus 235 ~lg~~~~~~g~~~g~g~~~~~~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~-------~i~~~q~ 306 (422)
T 2jbr_A 235 ISKAKDMMEGKSAGFGLYPDSKI-FYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGA-------NVGLATP 306 (422)
T ss_dssp EEEHHHHHHTCSTTTTSCTTCSS-SSSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCC-------BCTTCHH
T ss_pred eecccccccCCCCcccccCCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------ccccCHH
Confidence 998531110 013220000000 233456678999999999999999999999999998 9999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007523 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~ 408 (600)
+|++|++|.+.+++++++++++++.+++... .++. ...+....++++|.++++.+.++++.|+|+|||+||+++++
T Consensus 307 vq~~la~~~~~~~aar~~~~~aa~~~d~~~~---~g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~ 382 (422)
T 2jbr_A 307 ALMRIAESTHQVAAARALLEKTWEDHRIHGL---NHQY-PNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSE 382 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCc
Confidence 9999999999999999999999988764321 1221 11235567899999999999999999999999999999999
Q ss_pred hhhhhcccccccccccch-HHHHHHHHHHHHH
Q 007523 409 LPELFAVYVPACTYEGDN-IVLLLQVARFLMK 439 (600)
Q Consensus 409 l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll~ 439 (600)
++++|||++...+++|++ ++++..+++.+++
T Consensus 383 l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg 414 (422)
T 2jbr_A 383 LQRLFRDAHMTGAHAYTDYDVCAQILGRELMG 414 (422)
T ss_dssp HHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHHhC
Confidence 999999999999999999 9999999999874
No 38
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=8.6e-34 Score=306.18 Aligned_cols=272 Identities=10% Similarity=0.066 Sum_probs=214.2
Q ss_pred CHHHHHhHHHHHhccceeeEEeccCCCCC--------CCCCCCceEEE-EeCCCCeEEEecCCCCccccccCCCCCCccE
Q 007523 114 TDEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNVQGLETTAT-FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTH 184 (600)
Q Consensus 114 t~eq~~~~l~~i~~g~~~~~~a~tE~~~G--------sd~~~~~TtA~-~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~ 184 (600)
.+|||++|||++++|++++|+|+|||+.| ||+. +.|+++ +| +|+|||| |+|+|+|| +.||+
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~--gdg~Vln-----G~K~~iT~--~~Ad~ 191 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQT--EKGIVVR-----GARMTATF--PLADE 191 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEEC--SSEEEEE-----EEEEEEEC--CCSSE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEE--CCEEEEE-----eEEEEecc--ccccE
Confidence 46899999999999999999999999976 6775 777775 45 8999999 99999998 89999
Q ss_pred EEEEEEEecC-CCCCceEEEEEeeccCCCCCCCCCeEEe--ccCCc--------cCCCCcCC-cccceEEecceecCccc
Q 007523 185 AVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG--DIGMK--------FGNGAYNT-MDNGVLRFEHVRIPRNQ 252 (600)
Q Consensus 185 ~vV~A~~~~~-~~~~g~~~flV~~rd~~~~~~~pGv~i~--~~~~~--------~G~~~~~~-~~~~~v~f~~v~VP~~~ 252 (600)
++|+|+++.+ +...++++|+|| .+.|||++. +.+.+ +| .+. .+++.|.||||+||.++
T Consensus 192 ~iV~art~~~~~~~~~~s~flVp-------~dtpGv~v~~r~~~~~~~s~~d~~lg---~r~~~~~~~v~FddV~VP~e~ 261 (481)
T 2yyk_A 192 VLIFPSILLQAGSEKYALAFALP-------TSTPGLHFVCREALVGGDSPFDHPLS---SRVEEMDCLVIFDDVLVPWER 261 (481)
T ss_dssp EEECCCSCCCTTCGGGCEEEEEE-------TTCTTEEEEECCCCCCCSCTTTCTTT---TTCCCCEEEEEEEEEEEEGGG
T ss_pred EEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEeccccccCCcccccccc---ccCCCCeEEEEEccEEECHHH
Confidence 9999998642 223468999999 889999995 33332 44 553 56789999999999999
Q ss_pred cccccccccCCCceeecccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHH
Q 007523 253 MLMRVSQVTREGKYVQSNVPRQLL--YGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 330 (600)
Q Consensus 253 lL~~~~~v~~~g~~~~~~~~~~~~--~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q 330 (600)
+|+. + +.|.... .. ...+..+|+..++.++|.++.++.++.+|+.. | +|+++|.+|
T Consensus 262 vl~~-G---~~~~g~~------~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~---------gi~~~q~vq 319 (481)
T 2yyk_A 262 VFIL-G---NVELCNN------AYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---I---------GADVYGHVQ 319 (481)
T ss_dssp EEEE-S---CHHHHHH------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T---------TGGGSHHHH
T ss_pred ccCC-C---CccHHHH------HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---c---------ChhhhHHHH
Confidence 9841 0 1222111 11 45667889999999999999999999888763 2 588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChh
Q 007523 331 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 410 (600)
Q Consensus 331 ~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~ 410 (600)
++|++|.+.+++++++++++++..+. .+..........++++|.++++.+.++++.|+|+|||.|++ .+++
T Consensus 320 ~~laem~~~leaar~l~~~aa~~~d~-------~~~G~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e 390 (481)
T 2yyk_A 320 EKIAEIIVYLEAMRAFWTRAEEEAKE-------NAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSE 390 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEE-------CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc-------cccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccH
Confidence 99999999999999999999875421 01111112345689999999999999999999999998888 8888
Q ss_pred hhhccccccc------ccccchHHHHHHHHHHH
Q 007523 411 ELFAVYVPAC------TYEGDNIVLLLQVARFL 437 (600)
Q Consensus 411 ~~~rd~~~~~------~~~G~~~vl~~~ia~~l 437 (600)
++| +.+... ...|.+++.+.+++|.+
T Consensus 391 ~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 391 KDF-KGPLGPFLEKFLQGAALEAKERVALFRLA 422 (481)
T ss_dssp HHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 888 774422 33599999999999854
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=6.5e-34 Score=307.51 Aligned_cols=274 Identities=12% Similarity=0.004 Sum_probs=209.1
Q ss_pred HHhcCCC--HHHHHhHHHHHhccceeeEEeccCCCCC--------CCC-CCCceEEEEeCCCCeEEEecCCCCccccccC
Q 007523 108 AIKGQGT--DEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNV-QGLETTATFDPQTDEFVIHSPTLTSSKWWPG 176 (600)
Q Consensus 108 ~i~~~gt--~eq~~~~l~~i~~g~~~~~~a~tE~~~G--------sd~-~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~ 176 (600)
.+..+|| +|||++|||++++|++++|+|+|||+.| ||+ ..++ +|+++ +|+|||| |+|+|+|
T Consensus 119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~--gdg~vln-----G~K~~iT 190 (490)
T 1u8v_A 119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKR--EDGIVVR-----GAKAHQT 190 (490)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEEC--SSEEEEE-----EEECSCT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEE--CCEEEEE-----eEEEEee
Confidence 4458999 9999999999999999999999999864 775 4454 78877 8999999 9999999
Q ss_pred CCCCCccEEEEEEEEecC-CCCCceEEEEEeeccCCCCCCCCCeEEe---ccCCc----------cCCCCc-CC-cccce
Q 007523 177 GLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG---DIGMK----------FGNGAY-NT-MDNGV 240 (600)
Q Consensus 177 ~~a~~A~~~vV~A~~~~~-~~~~g~~~flV~~rd~~~~~~~pGv~i~---~~~~~----------~G~~~~-~~-~~~~~ 240 (600)
| +..||+++|+|++..+ +...++++|+|| .+.|||++. +.+.+ +| . +. .+++.
T Consensus 191 ~-a~~Ad~~iV~art~~~~~~~~~~s~flVp-------~d~pGv~v~~~r~~~~~~~~~~~~d~~lg---~~r~~~~~~~ 259 (490)
T 1u8v_A 191 G-SINSHEHIIMPTIAMTEADKDYAVSFACP-------SDADGLFMIYGRQSCDTRKMEEGADIDLG---NKQFGGQEAL 259 (490)
T ss_dssp T-CTTCSEEEECCSSCCCGGGGGGCEEEEEE-------TTCTTEEEEECCCTTGGGGGSTTCCGGGS---SSSCCCCCEE
T ss_pred C-CcccCEEEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEecccccccccccccccCCcc---ccccCCceEE
Confidence 9 9999999999987532 223457899999 889999994 44443 55 5 43 56788
Q ss_pred EEecceecCccccccccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 007523 241 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 320 (600)
Q Consensus 241 v~f~~v~VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e 320 (600)
|.||||+||.+++|+. + ..|.... .....+...|+.+++.++|.+..++.++..... .|
T Consensus 260 v~FddV~VP~e~vl~~-g---~~~~g~~------~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~---~~-------- 318 (490)
T 1u8v_A 260 VVFDNVFIPNDRIFLC-Q---EYDFAGM------MVERFAGYHRQSYGGCKVGVGDVVIGAAALAAD---YN-------- 318 (490)
T ss_dssp EEEEEEEEEGGGEEEE-S---CGGGHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--------
T ss_pred EEECceEeCHHHccCC-C---ChhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--------
Confidence 9999999999999841 0 1232222 333445567776666666666666655544332 12
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 007523 321 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 400 (600)
Q Consensus 321 ~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg 400 (600)
+|+++|.+|++|++|.+.+++++++++++++..+. .+..........++++|.++++.+.++++.|+|+|||
T Consensus 319 -gi~~~q~vq~~laem~~~leaar~l~~~aa~~~d~-------~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg 390 (490)
T 1u8v_A 319 -GAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYP-------TAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGG 390 (490)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE-------CTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCT
T ss_pred -CchhcHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-------cccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 47799999999999999999999999998775421 0111111234568999999999999999999999999
Q ss_pred cccccCCChhhhhccc-ccccccccchHHHHH
Q 007523 401 HGYLCSSGLPELFAVY-VPACTYEGDNIVLLL 431 (600)
Q Consensus 401 ~Gy~~~~~l~~~~rd~-~~~~~~~G~~~vl~~ 431 (600)
.||+ +|++++|||. +++.++|.....++.
T Consensus 391 ~g~~--~p~er~~rd~~~~~~~~~~~~~~l~~ 420 (490)
T 1u8v_A 391 LMVT--MPSEADFKSETVVGRDGETIGDFCNK 420 (490)
T ss_dssp HHHH--CCCHHHHTCCCBCSTTSCBHHHHHHH
T ss_pred chhc--ChHHHHHhCchhccccchhHHHHHHH
Confidence 9998 8999999998 888888876555543
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.97 E-value=3.2e-29 Score=270.04 Aligned_cols=281 Identities=12% Similarity=-0.002 Sum_probs=189.4
Q ss_pred CCC--HHHHHhHHHHHhccceeeEEeccCCCC--------CCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCC
Q 007523 112 QGT--DEQHQKWLPLAYKMEIIGCYAQTELGH--------GSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV 181 (600)
Q Consensus 112 ~gt--~eq~~~~l~~i~~g~~~~~~a~tE~~~--------Gsd~~~~~TtA~~d~~~~~~vLntp~~~G~K~~v~~~a~~ 181 (600)
+|+ .+|+++|||++++|++++|+|+|||+. |||+ .++|++ .+ +|+|||| |+|+|+|| +..
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~~-~~--gdg~Vln-----G~K~~iT~-a~~ 196 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIVE-KT--DDGIIVN-----GVKAVGTG-IAF 196 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEEE-EC--SSEEEEE-----EEEEEEES-GGG
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEEE-EE--CCEEEEE-----EEEEEECC-ccc
Confidence 554 468899999999999999999999986 5888 665543 34 7899999 99999999 999
Q ss_pred ccEEEEEEEEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCC--cC-----CcccceEEecceecCccccc
Q 007523 182 STHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA--YN-----TMDNGVLRFEHVRIPRNQML 254 (600)
Q Consensus 182 A~~~vV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~--~~-----~~~~~~v~f~~v~VP~~~lL 254 (600)
||+++|+|+++.....+++++|+|| .+.|||++.+.+.++|... .+ +..++.|.||||+||.+++|
T Consensus 197 Ad~~lV~a~t~~~~~~~~~s~FlVp-------~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl 269 (515)
T 3hwc_A 197 GDYMHIGCLYRPGIPGEQVIFAAIP-------TNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVF 269 (515)
T ss_dssp CSEEEECCCCCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEE
T ss_pred cCEEEEEEEecCCCCCCeEEEEEEE-------CCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHcc
Confidence 9999999987332222238999999 8899999987777766100 11 12368899999999999999
Q ss_pred cccccccCCCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHH
Q 007523 255 MRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLF 334 (600)
Q Consensus 255 ~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa 334 (600)
+. + +.|.+.. .+...+...+...++..+|.+..++..+..++. +| +|++||.+|++|+
T Consensus 270 ~~-G---e~g~g~~------~~~~~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~---------gI~~fQ~Vq~kLA 327 (515)
T 3hwc_A 270 HI-G---NPEHAKL------YPQRIFDWVHYHILIRQVLRAELIVGLAILITE---HI---------GTSKLPTVSARVA 327 (515)
T ss_dssp EE-S---CTTGGGT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---------TCTTSHHHHHHHH
T ss_pred CC-C---CccHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc---------CCcccHHHHHHHH
Confidence 31 0 1333322 221222222111112334444444444444432 23 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCC------
Q 007523 335 PLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG------ 408 (600)
Q Consensus 335 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~------ 408 (600)
+|.+.+++++++++++++..+ ..+..........++++|.++++.+.++++.|+|+|||.+++..+.
T Consensus 328 em~~~lEaaR~l~~~Aa~~~d-------~~~~G~~~p~~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~Ps~~d~~~p 400 (515)
T 3hwc_A 328 KLVAFHLAMQAHLIASEETGF-------HTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIPSEGQWDDS 400 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTCE-------ECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCCCHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHhhc-------cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCHHHhcCc
Confidence 999999999999998876532 1111111123456899999999999999999999999999985322
Q ss_pred -hhhhhcccccccccccchHHHHHHHHHHHH
Q 007523 409 -LPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 409 -l~~~~rd~~~~~~~~G~~~vl~~~ia~~ll 438 (600)
+..++..............+-...++..+.
T Consensus 401 e~~~~l~ky~~g~~~~a~~R~kl~rl~~d~~ 431 (515)
T 3hwc_A 401 QSGQWFVKLNNGPKGNPRERVQIGRVIRDLY 431 (515)
T ss_dssp TTHHHHHHHTCCTTCCTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 232333222222234444555555665553
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.89 E-value=5e-22 Score=214.39 Aligned_cols=254 Identities=11% Similarity=-0.011 Sum_probs=180.4
Q ss_pred HHHHhHHHHHhccceeeEEeccCCCCC-C----CCCCCceE-EEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEE
Q 007523 116 EQHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLETT-ATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYA 189 (600)
Q Consensus 116 eq~~~~l~~i~~g~~~~~~a~tE~~~G-s----d~~~~~Tt-A~~d~~~~~~vLntp~~~G~K~~v~~~a~~A~~~vV~A 189 (600)
+...+|+..+....+..+.++|+|-.. | ....+-.. .+.+ +|||||| |.|.|+|| ++.||+++|++
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~--~dGiVVn-----GaK~~~T~-a~~Ad~i~V~a 205 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKN--DKGIVVS-----GVKAIGTG-VAFADWIHIGV 205 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEEC--SSEEEEE-----EEEEEEES-GGGCSEEEECC
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEc--CCeEEEe-----eEehhhcC-ccccCEEEEEe
Confidence 445689999999999999999999532 1 11111112 2223 6899999 99999999 99999999999
Q ss_pred EEecCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCccCCCC------cCCcc-cceEEecceecCccccccccccccC
Q 007523 190 RLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA------YNTMD-NGVLRFEHVRIPRNQMLMRVSQVTR 262 (600)
Q Consensus 190 ~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~~~G~~~------~~~~~-~~~v~f~~v~VP~~~lL~~~~~v~~ 262 (600)
++.+..+.++..+|+|| .++|||++.......+... .++.. .+.|.||||+||.++++.- + +
T Consensus 206 ~t~~~~~~d~~~~F~VP-------~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~-G---e 274 (517)
T 4g5e_A 206 FFRPGIPGDQIIFAATP-------VNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHL-G---N 274 (517)
T ss_dssp CCCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEE-S---C
T ss_pred ecCCCCCccceEEEEEe-------cCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHcccc-C---C
Confidence 98766556778899999 8999999955444443100 22222 3679999999999998731 0 1
Q ss_pred CCceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHH
Q 007523 263 EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYA 342 (600)
Q Consensus 263 ~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a 342 (600)
.+.... .....+...|...++..++.++.++..+..++.. +| |.+||.+|++|++|.+.+++
T Consensus 275 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae~---~G---------i~~fq~Vq~kLaEm~~~~E~ 336 (517)
T 4g5e_A 275 PEHAKL------YPQRVFDWLHYHALIRQSVRAELMAGLAILITEH---IG---------TNKIPAVQTRVAKLIGFHQA 336 (517)
T ss_dssp TTHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT---------CTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC---------CcccHHHHHHHHHHHHHHHH
Confidence 232221 3445566777777777888888888888888743 33 67899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcc
Q 007523 343 FRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAV 415 (600)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd 415 (600)
++++++.+.... ...+..........++++|.++++...+++++++|++||.|++. |-+..+++
T Consensus 337 ~ral~~aaa~~a-------~~~~~G~~~P~~~~a~~aK~~a~~~~~rv~~eaiqi~GG~g~~~--Pse~d~~~ 400 (517)
T 4g5e_A 337 MLAHIVASEELG-------FHTPGGAYKPNILIYDFGRALYLENFSQMIYELVDLSGRSALIF--ASEDQWND 400 (517)
T ss_dssp HHHHHHHHHHTC-------EECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCC--CCHHHHHC
T ss_pred HHHHHHHHHHhc-------ccCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--CCHHHhcC
Confidence 998887664321 01111111112456788999999999999999999999999984 44444444
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=89.19 E-value=2.4 Score=46.28 Aligned_cols=120 Identities=8% Similarity=-0.010 Sum_probs=76.0
Q ss_pred HHHHHHHhhhccccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHh
Q 007523 299 VCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAG 378 (600)
Q Consensus 299 l~~a~~ya~~R~qfg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 378 (600)
+-.++.++.+| +|+ .|.+-|.+..||+++.+.+|++.+.+.++...+... + .+.......+
T Consensus 471 ~~~~~~~~~~~--~~~-------~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~------~----~~~~~~~~~~ 531 (597)
T 3owa_A 471 GLMVAGLAAQK--YGK-------ALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTT------G----LEKNKQKVLY 531 (597)
T ss_dssp HHHHHHHHHHH--HGG-------GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C----SGGGHHHHHH
T ss_pred HHHHHHHHHHH--hCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------C----ccchHHHHHH
Confidence 44455555444 455 688899999999999999999999988886655421 1 1233455678
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCChhhhhcccccccccccch-HHHHHHHHHHHHH
Q 007523 379 LKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 439 (600)
Q Consensus 379 ~K~~at~~a~~~~~~~~q~~Gg~Gy~~~~~l~~~~rd~~~~~~~~G~~-~vl~~~ia~~ll~ 439 (600)
+++||.+...++-..+.++. ..+...-.+..++...+-..-+...| ..++.+||+.++.
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 591 (597)
T 3owa_A 532 TEVFCQEAFNEIEAHAKETL--IAVENGDMLRMMLSSLRKLTRHTPLNVIPKKREIAAKILE 591 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999888887 33333323333333333333333333 3444555555543
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=55.10 E-value=91 Score=33.76 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=48.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 007523 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 399 (600)
Q Consensus 322 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~K~~at~~a~~~~~~~~q~~G 399 (600)
.+.+.|.+..||++++..+|++..+..++.+.+.. +. +.......+++.|+.+...++-..+.++..
T Consensus 509 ~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~-------g~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 575 (607)
T 2uxw_A 509 GIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSE-------GH----PTAQHEKMLCDTWCIEAAARIREGMAALQS 575 (607)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68888999999999999999988887777554421 11 122233566888888888888777777443
No 44
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=21.37 E-value=1.1e+02 Score=19.41 Aligned_cols=23 Identities=4% Similarity=0.157 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCcCC
Q 007523 578 AKQASLANEQLRSLYSQVFTCVK 600 (600)
Q Consensus 578 ~~~~~~i~~~v~~l~~~Lr~~~~ 600 (600)
.+.++.|-+.|.+.+.+|+|..+
T Consensus 14 g~~~kkIgQkIKdFf~~l~pr~e 36 (37)
T 2k6o_A 14 GKEFKRIVQRIKDFLRNLVPRTE 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHHHhhCcccc
Confidence 35578888999999999999864
Done!