BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007525
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 25/216 (11%)
Query: 371 IHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVV 430
+ ++R +LE LAG N +T+ + L+ +Y++ +L ER R++ + DVV
Sbjct: 140 VKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVV 199
Query: 431 CDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA 490
D+FAGVGP I A K K++YA D+NP+A++ L++N LNKLE KI D R +D
Sbjct: 200 VDMFAGVGPFSI-ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE-VDV 257
Query: 491 MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFD 550
K +V+MNLP A +F+D I + IH Y K D
Sbjct: 258 --------KGNRVIMNLPKFAHKFIDKALDIVEEGGV--------IHYYTIGK------D 295
Query: 551 FHERIRIALVEVAVNV-EMRRVRLVAPGKWMLCASF 585
F + I++ + V E R V+ AP +++L F
Sbjct: 296 FDKAIKLFEKKCDCEVLEKRIVKSYAPREYILALDF 331
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 29/218 (13%)
Query: 371 IHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVV 430
+ ++R +LE LAG N +T+ + L+ +Y++ +L ER R++ + DVV
Sbjct: 140 VKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVV 199
Query: 431 CDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA 490
D+FAGVGP I A K K++YA D+NP+A++ L +N LNKLE KI D R +D
Sbjct: 200 VDMFAGVGPFSI-ACKNAKKIYAIDINPHAIELLXKNIKLNKLEHKIIPILSDVRE-VDV 257
Query: 491 MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFD 550
K +V+MNLP A +F+D I + IH Y K D
Sbjct: 258 --------KGNRVIMNLPKFAHKFIDKALDIVEEG--------GVIHYYTIGK------D 295
Query: 551 FHERIRIALVEVAVNVEMRRVRLV---APGKWMLCASF 585
F + I+ L E + E+ R+V AP +++L F
Sbjct: 296 FDKAIK--LFEKKCDCEVLEKRIVXSYAPREYILALDF 331
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 371 IHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVV 430
+ ++R +LE LAG N +T+ + L+ +Y++ +L ER R+ + DVV
Sbjct: 140 VKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIXKKVSLNDVV 199
Query: 431 CDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA 490
D FAGVGP I A K K++YA D+NP+A++ L++N LNKLE KI D R +D
Sbjct: 200 VDXFAGVGPFSI-ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE-VDV 257
Query: 491 MFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFD 550
K +V+ NLP A +F+D I + IH Y K D
Sbjct: 258 --------KGNRVIXNLPKFAHKFIDKALDIVEEGGV--------IHYYTIGK------D 295
Query: 551 FHERIRIALVEVAVNV-EMRRVRLVAPGKWMLCASF 585
F + I++ + V E R V+ AP +++L F
Sbjct: 296 FDKAIKLFEKKCDCEVLEKRIVKSYAPREYILALDF 331
>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Adomet
pdb|3A26|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Mesado
Length = 301
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 7/182 (3%)
Query: 309 MNEILEALLPKGMI--IPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVN 366
+ EIL LP+ ++ +P + +G + L LR E +P+K+ IA+V + ++TV+
Sbjct: 33 IREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEVLG--VKTVLR 90
Query: 367 KIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNF 426
K IH + R E+L G+++ VT+ + + + I ++ ER R+
Sbjct: 91 K-GHIHGETRKPDYELLYGSDT-VTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKP 148
Query: 427 KDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 485
++V D+FAG+G + +P A K +V A + +PY +L N LNK+E ++ +NMD R
Sbjct: 149 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR 208
Query: 486 RF 487
F
Sbjct: 209 DF 210
>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From
Pyrococcus Horikoshii
Length = 278
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 309 MNEILEALLPKGMI--IPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVN 366
+ EIL LP+ ++ +P + +G + L LR E +P+K+ IA+V + ++TV+
Sbjct: 10 IREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAEV--LGVKTVLR 67
Query: 367 KIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNF 426
K IH + R E+L G+++ VT+ + + + I ++ ER R
Sbjct: 68 K-GHIHGETRKPDYELLYGSDT-VTVHVENGIKYKLDVAKIXFSPANVKERVRXAKVAKP 125
Query: 427 KDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 485
++V D FAG+G + +P A K +V A + +PY +L N LNK+E + +N D R
Sbjct: 126 DELVVDXFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRXSAYNXDNR 185
Query: 486 RF 487
F
Sbjct: 186 DF 187
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 36/234 (15%)
Query: 358 KPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRC-FDTIYWNSKLATE 416
+ K + ++ I ++RT +++L G + + + LF+ I W+ E
Sbjct: 52 RTKCKAILLYTTQITGEFRTPHVKILYGKET--ETIHKEYGCLFKLDVAKIMWSQGNIEE 109
Query: 417 RQRLLSGFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLE 474
R+R+ N +VV D+FAG+G IP AK K VYA + NP A YL N LNKL
Sbjct: 110 RKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN 169
Query: 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR--------- 525
I + D R A +V+M + +FLD +DR
Sbjct: 170 NVIPIL-ADNRDVELKDVAD-------RVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETV 221
Query: 526 PEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKW 579
E + P L +++ + ++ E+R+++ APG W
Sbjct: 222 AEKIMYERPIERLKFYAEKNGYKL--------------IDYEVRKIKKYAPGVW 261
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERN 467
DV DV G G + + A V+RVYA D NP A+ E N
Sbjct: 35 DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXN 74
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483
DVV D F GVG I A RV A D++P + N+ + + KIE D
Sbjct: 45 DVVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGD 100
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483
DVV D F GVG I A RV A D++P + N+ + + KIE D
Sbjct: 80 DVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGD 135
>pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
Length = 297
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 418 QRLLSGFNF-KDVVCDVFAGVGPICIPAAKIVKRVYANDLNP 458
+RL+ F+F DVV D FAG G I AA+ +R +L P
Sbjct: 226 ERLVRXFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVP 267
>pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
Length = 297
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 418 QRLLSGFNF-KDVVCDVFAGVGPICIPAAKIVKRVYANDLNP 458
+RL+ F+F DVV D FAG G I AA+ +R +L P
Sbjct: 226 ERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVP 267
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 394 LFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYA 453
L H S F+ NS A R +S + + D+++GVG I AK V
Sbjct: 264 LIHPNSFFQT------NSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKG 317
Query: 454 NDLNPYAVDYLERNSVLNKLEKKIEV 479
D N +A++ RN +N ++ + EV
Sbjct: 318 FDSNEFAIEMARRNVEINNVDAEFEV 343
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 394 LFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYA 453
L H S F+ NS A R +S + + D+++GVG I AK V
Sbjct: 264 LIHPNSFFQT------NSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKG 317
Query: 454 NDLNPYAVDYLERNSVLNKLEKKIEV 479
D N +A++ RN +N ++ + EV
Sbjct: 318 FDSNEFAIEMARRNVEINNVDAEFEV 343
>pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboiia (Moraxella
Bovis)
pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboiia (Moraxella
Bovis)
Length = 260
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE 474
N D+V D F G G I A K+ + D+N V+ + N VLN+LE
Sbjct: 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVN--QANFVLNQLE 258
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487
D + D+ G G I I A VK D+N A+ + N LN L+ N D R
Sbjct: 54 DDILDLGCGYGVIGIALADEVKSTTXADINRRAIKLAKENIKLNNLD------NYDIRVV 107
Query: 488 IDAMFASQKAHKITQVVMNLP 508
++ + K K +++ N P
Sbjct: 108 HSDLYENVKDRKYNKIITNPP 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,688,131
Number of Sequences: 62578
Number of extensions: 662547
Number of successful extensions: 1670
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1646
Number of HSP's gapped (non-prelim): 19
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)