Query 007525
Match_columns 600
No_of_seqs 451 out of 2636
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 11:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2078 tRNA modification enzy 100.0 7.3E-66 1.6E-70 542.0 22.7 385 92-592 30-455 (495)
2 COG2520 Predicted methyltransf 100.0 1.2E-51 2.6E-56 432.6 27.9 266 308-588 68-340 (341)
3 PF02475 Met_10: Met-10+ like- 100.0 1.7E-45 3.8E-50 362.2 21.1 193 325-525 1-195 (200)
4 KOG1227 Putative methyltransfe 99.9 4E-26 8.6E-31 233.5 11.2 252 322-587 89-347 (351)
5 PRK15128 23S rRNA m(5)C1962 me 99.9 4.7E-22 1E-26 214.1 27.2 224 322-561 111-359 (396)
6 KOG2078 tRNA modification enzy 99.9 4.6E-25 1E-29 233.9 2.1 418 21-473 6-459 (495)
7 COG1092 Predicted SAM-dependen 99.9 5.5E-22 1.2E-26 212.7 24.2 198 322-525 107-329 (393)
8 PF10672 Methyltrans_SAM: S-ad 99.9 2.2E-20 4.7E-25 193.4 23.4 191 326-525 18-231 (286)
9 COG2265 TrmA SAM-dependent met 99.8 8.7E-19 1.9E-23 190.7 22.3 212 343-582 211-431 (432)
10 PRK11783 rlmL 23S rRNA m(2)G24 99.8 7E-19 1.5E-23 201.7 22.6 192 323-525 425-649 (702)
11 TIGR00479 rumA 23S rRNA (uraci 99.8 4.2E-18 9.1E-23 184.5 27.1 185 330-520 193-385 (431)
12 PRK03522 rumB 23S rRNA methylu 99.8 2.6E-16 5.6E-21 164.5 28.4 159 344-511 89-252 (315)
13 TIGR02085 meth_trns_rumB 23S r 99.8 7.9E-17 1.7E-21 172.4 23.5 212 344-584 149-369 (374)
14 PRK05031 tRNA (uracil-5-)-meth 99.7 4.9E-16 1.1E-20 165.7 27.6 210 345-587 131-359 (362)
15 PF05958 tRNA_U5-meth_tr: tRNA 99.7 6.1E-16 1.3E-20 164.5 16.7 172 393-586 160-348 (352)
16 TIGR02143 trmA_only tRNA (urac 99.6 1.3E-14 2.8E-19 154.4 22.0 185 379-585 145-348 (353)
17 KOG2187 tRNA uracil-5-methyltr 99.6 2.6E-15 5.5E-20 163.8 15.1 132 377-512 332-468 (534)
18 PRK13168 rumA 23S rRNA m(5)U19 99.6 1.7E-14 3.7E-19 157.5 21.6 170 396-586 263-439 (443)
19 PRK04338 N(2),N(2)-dimethylgua 99.6 1.3E-14 2.7E-19 156.2 14.8 119 406-539 31-157 (382)
20 TIGR00308 TRM1 tRNA(guanine-26 99.6 1.5E-14 3.3E-19 155.2 14.1 135 394-542 2-149 (374)
21 PF13659 Methyltransf_26: Meth 99.5 7.8E-14 1.7E-18 123.0 9.7 95 427-525 1-108 (117)
22 PRK10909 rsmD 16S rRNA m(2)G96 99.4 3.5E-12 7.7E-17 126.1 16.3 110 425-543 52-162 (199)
23 TIGR03533 L3_gln_methyl protei 99.4 2E-12 4.3E-17 133.9 14.2 106 396-510 88-200 (284)
24 TIGR00095 RNA methyltransferas 99.4 3.4E-12 7.4E-17 124.9 14.0 96 425-523 48-144 (189)
25 PF05175 MTS: Methyltransferas 99.4 2.9E-12 6.3E-17 122.6 12.5 92 426-525 31-133 (170)
26 PF03602 Cons_hypoth95: Conser 99.4 1.5E-12 3.1E-17 127.2 10.0 97 425-523 41-138 (183)
27 TIGR03704 PrmC_rel_meth putati 99.4 6.6E-12 1.4E-16 127.9 14.3 116 379-510 42-164 (251)
28 COG4123 Predicted O-methyltran 99.4 5.1E-12 1.1E-16 128.7 13.4 144 424-589 42-214 (248)
29 PRK11805 N5-glutamine S-adenos 99.4 8.6E-12 1.9E-16 130.7 14.5 117 379-510 89-212 (307)
30 COG2263 Predicted RNA methylas 99.4 3.3E-12 7.2E-17 125.0 10.4 87 425-522 44-137 (198)
31 COG2890 HemK Methylase of poly 99.3 8E-12 1.7E-16 129.4 10.6 104 396-510 79-187 (280)
32 TIGR00536 hemK_fam HemK family 99.3 2.6E-11 5.7E-16 125.1 13.8 106 396-510 81-193 (284)
33 COG0742 N6-adenine-specific me 99.3 3.1E-11 6.8E-16 118.3 13.3 121 370-515 4-129 (187)
34 PRK14967 putative methyltransf 99.3 5.3E-11 1.1E-15 118.3 14.5 93 424-525 34-152 (223)
35 PRK14966 unknown domain/N5-glu 99.3 5.7E-11 1.2E-15 129.1 15.5 117 379-510 210-330 (423)
36 COG2521 Predicted archaeal met 99.3 7.4E-11 1.6E-15 118.8 14.7 150 396-561 107-267 (287)
37 TIGR00446 nop2p NOL1/NOP2/sun 99.2 7.9E-11 1.7E-15 120.6 13.8 95 424-525 69-192 (264)
38 PF12847 Methyltransf_18: Meth 99.2 7.6E-11 1.6E-15 103.0 11.0 94 426-525 1-104 (112)
39 TIGR00537 hemK_rel_arch HemK-r 99.2 1.1E-10 2.3E-15 112.0 12.6 101 425-543 18-143 (179)
40 TIGR01177 conserved hypothetic 99.2 6.5E-11 1.4E-15 124.6 11.9 95 424-525 180-287 (329)
41 TIGR03534 RF_mod_PrmC protein- 99.2 2.6E-10 5.6E-15 113.5 14.7 105 396-510 56-165 (251)
42 PRK15001 SAM-dependent 23S rib 99.2 1.3E-09 2.7E-14 117.6 19.7 125 393-525 194-333 (378)
43 PRK00377 cbiT cobalt-precorrin 99.2 3.5E-10 7.6E-15 110.5 14.0 97 424-525 38-138 (198)
44 TIGR00406 prmA ribosomal prote 99.2 4.2E-10 9.2E-15 116.6 15.2 133 395-543 125-262 (288)
45 COG2813 RsmC 16S RNA G1207 met 99.2 3.5E-10 7.6E-15 117.9 14.2 120 396-525 127-259 (300)
46 COG2264 PrmA Ribosomal protein 99.2 1.1E-09 2.4E-14 114.5 17.4 123 396-525 129-256 (300)
47 PRK01544 bifunctional N5-gluta 99.2 1.3E-10 2.8E-15 129.4 11.0 117 379-510 71-217 (506)
48 PRK09489 rsmC 16S ribosomal RN 99.1 6.8E-10 1.5E-14 118.2 15.8 131 393-542 162-305 (342)
49 PF06325 PrmA: Ribosomal prote 99.1 9.8E-11 2.1E-15 122.4 9.1 131 396-544 128-263 (295)
50 PRK00107 gidB 16S rRNA methylt 99.1 7.4E-10 1.6E-14 108.6 14.1 105 422-542 41-147 (187)
51 PF09445 Methyltransf_15: RNA 99.1 6.6E-11 1.4E-15 113.9 6.5 83 428-513 1-83 (163)
52 TIGR00138 gidB 16S rRNA methyl 99.1 3.3E-10 7.2E-15 110.2 11.0 92 426-525 42-135 (181)
53 PRK04266 fibrillarin; Provisio 99.1 1.1E-09 2.4E-14 110.3 14.9 148 424-587 70-225 (226)
54 PRK08287 cobalt-precorrin-6Y C 99.1 7.5E-09 1.6E-13 100.0 19.3 93 424-525 29-124 (187)
55 PRK09328 N5-glutamine S-adenos 99.1 2.6E-09 5.5E-14 108.3 16.8 105 396-510 76-186 (275)
56 PRK07402 precorrin-6B methylas 99.1 1.3E-09 2.8E-14 106.2 14.0 104 424-541 38-143 (196)
57 COG1867 TRM1 N2,N2-dimethylgua 99.1 5.8E-10 1.3E-14 118.5 12.4 123 407-543 28-157 (380)
58 PRK14968 putative methyltransf 99.1 8.6E-10 1.9E-14 104.7 12.2 94 425-525 22-141 (188)
59 TIGR02469 CbiT precorrin-6Y C5 99.1 1.6E-09 3.5E-14 95.5 12.8 101 419-525 10-115 (124)
60 PRK14904 16S rRNA methyltransf 99.1 8.1E-10 1.8E-14 121.1 13.2 105 424-544 248-381 (445)
61 TIGR00080 pimt protein-L-isoas 99.1 4.1E-10 9E-15 111.4 9.7 93 424-525 75-170 (215)
62 PF13847 Methyltransf_31: Meth 99.1 6E-10 1.3E-14 103.8 10.0 104 425-542 2-112 (152)
63 PRK00121 trmB tRNA (guanine-N( 99.1 1.5E-09 3.3E-14 106.8 13.1 103 426-540 40-156 (202)
64 PTZ00146 fibrillarin; Provisio 99.1 3.8E-09 8.3E-14 110.2 16.6 168 397-586 104-285 (293)
65 PLN02781 Probable caffeoyl-CoA 99.1 2.7E-09 5.9E-14 107.7 15.0 102 424-525 66-171 (234)
66 PRK11036 putative S-adenosyl-L 99.1 2E-09 4.4E-14 109.0 13.9 96 425-525 43-142 (255)
67 PRK14902 16S rRNA methyltransf 99.1 1.2E-09 2.5E-14 119.7 12.8 96 424-525 248-372 (444)
68 PRK14903 16S rRNA methyltransf 99.1 2.5E-09 5.4E-14 117.1 15.2 81 424-510 235-318 (431)
69 PRK14901 16S rRNA methyltransf 99.0 1.4E-09 3E-14 118.9 12.8 99 424-525 250-377 (434)
70 PRK12335 tellurite resistance 99.0 2.4E-09 5.3E-14 110.6 13.8 117 399-525 90-216 (287)
71 TIGR00091 tRNA (guanine-N(7)-) 99.0 2.3E-09 4.9E-14 104.8 12.8 103 426-540 16-132 (194)
72 PRK13944 protein-L-isoaspartat 99.0 1.9E-09 4E-14 106.3 11.9 100 418-525 62-166 (205)
73 PRK11207 tellurite resistance 99.0 3.1E-09 6.7E-14 104.2 12.9 93 425-525 29-127 (197)
74 PF01170 UPF0020: Putative RNA 99.0 4.8E-10 1E-14 108.9 7.0 81 424-510 26-117 (179)
75 PRK00517 prmA ribosomal protei 99.0 5E-09 1.1E-13 106.3 14.5 126 396-543 86-216 (250)
76 PLN02476 O-methyltransferase 99.0 6.3E-09 1.4E-13 108.1 15.4 116 410-525 102-221 (278)
77 TIGR02752 MenG_heptapren 2-hep 99.0 4.1E-09 9E-14 104.3 13.3 113 416-543 33-154 (231)
78 TIGR00477 tehB tellurite resis 99.0 5.1E-09 1.1E-13 102.5 13.5 91 426-525 30-126 (195)
79 COG2226 UbiE Methylase involve 99.0 5E-09 1.1E-13 106.6 13.1 107 424-546 49-162 (238)
80 TIGR00563 rsmB ribosomal RNA s 99.0 6E-09 1.3E-13 113.6 14.4 98 424-525 236-361 (426)
81 PRK10901 16S rRNA methyltransf 99.0 4.5E-09 9.7E-14 114.7 13.3 96 424-525 242-365 (427)
82 PF02353 CMAS: Mycolic acid cy 99.0 5.9E-09 1.3E-13 107.9 13.3 98 419-525 53-159 (273)
83 PF01209 Ubie_methyltran: ubiE 99.0 2.2E-09 4.8E-14 108.6 9.6 107 424-546 45-159 (233)
84 smart00650 rADc Ribosomal RNA 98.9 4.3E-09 9.3E-14 100.3 10.3 86 424-518 11-97 (169)
85 PLN02244 tocopherol O-methyltr 98.9 5.8E-09 1.3E-13 110.6 12.1 105 425-543 117-226 (340)
86 COG2242 CobL Precorrin-6B meth 98.9 1.3E-08 2.9E-13 99.8 12.8 95 424-525 32-128 (187)
87 PLN02672 methionine S-methyltr 98.9 4.9E-09 1.1E-13 125.0 11.8 108 396-511 85-215 (1082)
88 PLN02396 hexaprenyldihydroxybe 98.9 1.5E-08 3.2E-13 107.3 13.5 95 425-525 130-228 (322)
89 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.2E-08 2.6E-13 110.4 12.8 95 426-525 122-228 (390)
90 COG0116 Predicted N6-adenine-s 98.9 1.4E-08 3E-13 109.1 12.7 143 391-546 143-347 (381)
91 KOG2904 Predicted methyltransf 98.9 5E-09 1.1E-13 107.8 8.8 119 379-510 102-233 (328)
92 PTZ00338 dimethyladenosine tra 98.9 9.9E-09 2.1E-13 107.3 11.1 84 419-510 27-112 (294)
93 PF02005 TRM: N2,N2-dimethylgu 98.9 7.5E-09 1.6E-13 111.7 10.3 116 405-525 18-147 (377)
94 PRK11727 23S rRNA mA1618 methy 98.9 6.7E-09 1.4E-13 109.9 9.6 84 426-511 114-201 (321)
95 PHA03411 putative methyltransf 98.9 3.4E-08 7.3E-13 102.5 14.5 91 405-510 45-137 (279)
96 PHA03412 putative methyltransf 98.9 1.2E-08 2.7E-13 103.7 11.0 165 408-589 33-230 (241)
97 PRK13942 protein-L-isoaspartat 98.8 1.5E-08 3.2E-13 100.7 10.7 93 424-525 74-169 (212)
98 PRK15451 tRNA cmo(5)U34 methyl 98.8 3.4E-08 7.3E-13 100.0 12.7 101 424-540 54-164 (247)
99 KOG2730 Methylase [General fun 98.8 7.1E-09 1.5E-13 103.8 7.5 106 405-513 71-179 (263)
100 PRK11873 arsM arsenite S-adeno 98.8 5.2E-08 1.1E-12 99.3 13.7 106 424-544 75-187 (272)
101 COG2519 GCD14 tRNA(1-methylade 98.8 2.8E-08 6E-13 101.5 11.5 101 424-540 92-195 (256)
102 PRK00312 pcm protein-L-isoaspa 98.8 4.2E-08 9E-13 96.6 12.4 93 424-525 76-168 (212)
103 COG2227 UbiG 2-polyprenyl-3-me 98.8 1.9E-08 4.1E-13 102.1 10.1 92 426-525 59-154 (243)
104 COG1041 Predicted DNA modifica 98.8 1.1E-08 2.4E-13 108.6 8.8 95 424-525 195-303 (347)
105 PLN02233 ubiquinone biosynthes 98.8 3.9E-08 8.4E-13 100.7 11.9 108 424-545 71-187 (261)
106 COG2230 Cfa Cyclopropane fatty 98.8 8.7E-08 1.9E-12 99.7 14.5 104 424-544 70-180 (283)
107 PRK11783 rlmL 23S rRNA m(2)G24 98.8 2.7E-08 5.9E-13 115.0 11.8 82 425-510 189-314 (702)
108 PF01596 Methyltransf_3: O-met 98.8 4.6E-08 1E-12 97.5 11.6 102 424-525 43-148 (205)
109 PRK04457 spermidine synthase; 98.8 6.3E-08 1.4E-12 99.5 12.8 107 424-543 64-180 (262)
110 PRK14896 ksgA 16S ribosomal RN 98.8 3.3E-08 7.1E-13 101.0 9.8 82 419-511 20-103 (258)
111 TIGR02021 BchM-ChlM magnesium 98.7 8.1E-08 1.8E-12 94.9 11.9 90 425-523 54-149 (219)
112 TIGR03840 TMPT_Se_Te thiopurin 98.7 9.3E-08 2E-12 95.6 11.6 103 425-543 33-155 (213)
113 PRK13255 thiopurine S-methyltr 98.7 5.6E-08 1.2E-12 97.4 9.6 94 424-525 35-148 (218)
114 PRK13943 protein-L-isoaspartat 98.7 1.6E-07 3.4E-12 99.6 13.3 93 424-525 78-173 (322)
115 PTZ00098 phosphoethanolamine N 98.7 7.9E-08 1.7E-12 98.6 10.6 120 408-544 32-160 (263)
116 TIGR00740 methyltransferase, p 98.7 1.4E-07 3.1E-12 94.4 12.1 104 424-543 51-164 (239)
117 PF08704 GCD14: tRNA methyltra 98.7 7E-08 1.5E-12 98.8 10.0 97 424-525 38-139 (247)
118 PRK10742 putative methyltransf 98.7 8.5E-08 1.8E-12 98.1 10.3 87 419-510 77-175 (250)
119 PLN02336 phosphoethanolamine N 98.7 2.9E-07 6.3E-12 101.2 14.9 111 418-544 256-373 (475)
120 PRK00811 spermidine synthase; 98.7 7.2E-07 1.6E-11 92.7 16.8 96 425-525 75-184 (283)
121 cd02440 AdoMet_MTases S-adenos 98.7 2.8E-07 6E-12 75.8 11.1 91 429-525 1-97 (107)
122 PRK11188 rrmJ 23S rRNA methylt 98.6 2.5E-07 5.3E-12 92.0 12.3 102 423-544 48-169 (209)
123 PRK00274 ksgA 16S ribosomal RN 98.6 1E-07 2.2E-12 98.2 9.7 85 424-518 40-125 (272)
124 PRK14103 trans-aconitate 2-met 98.6 2.9E-07 6.3E-12 93.2 12.4 92 419-525 20-119 (255)
125 KOG3420 Predicted RNA methylas 98.6 3.9E-08 8.5E-13 93.2 5.5 90 426-523 48-144 (185)
126 PRK10258 biotin biosynthesis p 98.6 2E-07 4.3E-12 93.8 10.9 106 419-544 33-144 (251)
127 PRK11933 yebU rRNA (cytosine-C 98.6 2.9E-07 6.4E-12 102.0 12.8 105 424-543 111-244 (470)
128 TIGR02716 C20_methyl_CrtF C-20 98.6 3.9E-07 8.3E-12 94.8 12.8 103 424-543 147-257 (306)
129 PF13649 Methyltransf_25: Meth 98.6 1.1E-07 2.3E-12 82.8 7.3 88 430-525 1-100 (101)
130 PF03848 TehB: Tellurite resis 98.6 2.4E-07 5.2E-12 91.7 10.5 96 420-525 25-126 (192)
131 PRK01683 trans-aconitate 2-met 98.6 4.2E-07 9.2E-12 91.7 12.0 89 424-525 29-123 (258)
132 PF02390 Methyltransf_4: Putat 98.6 2.7E-07 5.8E-12 91.1 9.9 101 427-539 18-132 (195)
133 TIGR01983 UbiG ubiquinone bios 98.6 8.5E-07 1.8E-11 87.2 13.0 94 426-525 45-142 (224)
134 smart00828 PKS_MT Methyltransf 98.5 4.8E-07 1E-11 89.2 11.0 100 428-542 1-106 (224)
135 PF08241 Methyltransf_11: Meth 98.5 1.2E-07 2.5E-12 79.3 5.6 85 431-525 1-90 (95)
136 PRK11705 cyclopropane fatty ac 98.5 7.9E-07 1.7E-11 96.2 12.7 98 424-542 165-269 (383)
137 PRK00216 ubiE ubiquinone/menaq 98.5 7.5E-07 1.6E-11 87.4 11.1 106 424-543 49-161 (239)
138 PRK07580 Mg-protoporphyrin IX 98.5 7.4E-07 1.6E-11 87.8 11.1 73 425-506 62-134 (230)
139 PRK03612 spermidine synthase; 98.5 1.1E-06 2.4E-11 98.7 13.8 97 424-525 295-408 (521)
140 TIGR00755 ksgA dimethyladenosi 98.5 1.3E-06 2.8E-11 88.8 12.9 90 419-519 20-115 (253)
141 TIGR00417 speE spermidine synt 98.5 6.8E-06 1.5E-10 84.6 17.8 96 425-525 71-179 (270)
142 COG0144 Sun tRNA and rRNA cyto 98.5 2.4E-06 5.2E-11 91.7 14.7 98 424-525 154-281 (355)
143 COG4076 Predicted RNA methylas 98.5 2.3E-07 5E-12 91.3 6.2 89 427-524 33-127 (252)
144 PF05185 PRMT5: PRMT5 arginine 98.5 3.2E-07 7E-12 101.2 7.7 92 427-525 187-290 (448)
145 KOG1540 Ubiquinone biosynthesi 98.4 1.4E-06 2.9E-11 89.5 11.3 108 424-546 98-220 (296)
146 PLN02585 magnesium protoporphy 98.4 8.3E-07 1.8E-11 93.9 10.0 72 426-506 144-219 (315)
147 TIGR03587 Pse_Me-ase pseudamin 98.4 6.3E-07 1.4E-11 88.9 8.4 76 419-507 36-113 (204)
148 PLN02336 phosphoethanolamine N 98.4 8.2E-07 1.8E-11 97.7 9.9 102 417-525 26-135 (475)
149 PLN02366 spermidine synthase 98.4 1.9E-05 4.2E-10 83.4 19.8 98 424-525 89-199 (308)
150 PF01135 PCMT: Protein-L-isoas 98.4 8E-07 1.7E-11 88.9 8.9 99 418-525 62-165 (209)
151 PRK08317 hypothetical protein; 98.4 2.9E-06 6.3E-11 82.7 12.6 94 424-525 17-117 (241)
152 PRK06922 hypothetical protein; 98.4 2.1E-06 4.6E-11 98.0 12.9 95 425-525 417-530 (677)
153 PRK01581 speE spermidine synth 98.4 8.3E-06 1.8E-10 87.9 16.7 97 424-525 148-261 (374)
154 COG2518 Pcm Protein-L-isoaspar 98.4 6.9E-07 1.5E-11 89.4 7.8 99 418-525 62-162 (209)
155 KOG1270 Methyltransferases [Co 98.4 5.8E-07 1.3E-11 92.4 7.4 90 427-525 90-188 (282)
156 PLN02589 caffeoyl-CoA O-methyl 98.4 6.7E-06 1.5E-10 84.3 15.0 102 424-525 77-183 (247)
157 TIGR00438 rrmJ cell division p 98.4 3.3E-06 7.2E-11 81.8 12.1 102 422-543 28-149 (188)
158 PRK15068 tRNA mo(5)U34 methylt 98.4 3.8E-06 8.2E-11 89.0 13.2 94 425-525 121-219 (322)
159 TIGR03438 probable methyltrans 98.4 3E-06 6.6E-11 88.6 12.1 107 418-525 55-170 (301)
160 PRK05134 bifunctional 3-demeth 98.4 5.2E-06 1.1E-10 82.4 13.0 94 425-525 47-144 (233)
161 PLN03075 nicotianamine synthas 98.3 4.1E-06 9E-11 87.9 12.3 94 426-525 123-226 (296)
162 COG4122 Predicted O-methyltran 98.3 6.9E-06 1.5E-10 82.9 13.4 108 424-543 57-169 (219)
163 PF07021 MetW: Methionine bios 98.3 1.2E-06 2.5E-11 86.7 7.5 94 418-523 5-103 (193)
164 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 5.8E-06 1.3E-10 80.3 12.3 102 424-542 37-145 (223)
165 COG0220 Predicted S-adenosylme 98.3 3.9E-06 8.4E-11 85.1 11.3 99 428-538 50-162 (227)
166 PF05401 NodS: Nodulation prot 98.3 5E-06 1.1E-10 82.6 11.6 145 427-590 44-199 (201)
167 KOG3191 Predicted N6-DNA-methy 98.3 3.1E-06 6.7E-11 83.1 9.8 74 427-509 44-120 (209)
168 PF02384 N6_Mtase: N-6 DNA Met 98.3 7.6E-07 1.6E-11 92.5 5.9 99 407-511 27-137 (311)
169 TIGR00452 methyltransferase, p 98.3 8.9E-06 1.9E-10 86.1 12.5 100 419-525 112-218 (314)
170 PRK05785 hypothetical protein; 98.2 6.5E-06 1.4E-10 82.8 10.7 86 424-524 49-139 (226)
171 PF10294 Methyltransf_16: Puta 98.2 8E-06 1.7E-10 78.9 10.9 120 424-556 43-171 (173)
172 TIGR02081 metW methionine bios 98.2 3.9E-06 8.4E-11 81.7 8.3 93 419-523 6-103 (194)
173 PF13489 Methyltransf_23: Meth 98.2 9E-06 1.9E-10 74.7 10.1 101 418-543 14-118 (161)
174 KOG1253 tRNA methyltransferase 98.2 1.7E-06 3.6E-11 95.3 5.6 100 424-525 107-209 (525)
175 PRK00050 16S rRNA m(4)C1402 me 98.2 7.8E-06 1.7E-10 86.0 10.4 81 424-509 17-100 (296)
176 TIGR02072 BioC biotin biosynth 98.2 8.1E-06 1.7E-10 79.9 9.9 99 426-543 34-138 (240)
177 PLN02490 MPBQ/MSBQ methyltrans 98.2 1E-05 2.2E-10 86.6 11.1 91 425-525 112-208 (340)
178 PLN02823 spermine synthase 98.2 5.5E-05 1.2E-09 80.9 16.2 95 426-525 103-213 (336)
179 KOG1499 Protein arginine N-met 98.1 4.8E-06 1E-10 88.6 7.4 77 424-507 58-135 (346)
180 PRK06202 hypothetical protein; 98.1 8.4E-06 1.8E-10 81.4 8.4 89 425-523 59-159 (232)
181 COG0030 KsgA Dimethyladenosine 98.1 1.2E-05 2.6E-10 83.0 9.5 85 418-510 20-106 (259)
182 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 1.2E-05 2.6E-10 83.8 9.6 82 424-510 83-167 (283)
183 KOG1500 Protein arginine N-met 98.1 1.7E-05 3.6E-10 84.1 9.6 110 426-544 177-293 (517)
184 KOG1663 O-methyltransferase [S 98.1 4.7E-05 1E-09 77.2 12.5 100 426-525 73-176 (237)
185 TIGR02987 met_A_Alw26 type II 98.0 7.2E-06 1.6E-10 91.8 7.2 103 407-511 5-124 (524)
186 PRK11088 rrmA 23S rRNA methylt 98.0 1.2E-05 2.6E-10 82.6 8.1 85 426-525 85-174 (272)
187 TIGR01444 fkbM_fam methyltrans 98.0 9.7E-06 2.1E-10 74.2 6.4 57 429-486 1-59 (143)
188 KOG1122 tRNA and rRNA cytosine 98.0 1.9E-05 4E-10 85.8 8.4 107 424-544 239-374 (460)
189 KOG0820 Ribosomal RNA adenine 98.0 2E-05 4.4E-10 81.6 8.2 106 395-510 27-134 (315)
190 PF01564 Spermine_synth: Sperm 97.9 0.00017 3.7E-09 73.8 14.0 126 424-564 74-213 (246)
191 PRK01544 bifunctional N5-gluta 97.9 6.2E-05 1.3E-09 84.5 11.8 100 426-538 347-460 (506)
192 PRK13256 thiopurine S-methyltr 97.9 5.6E-05 1.2E-09 76.8 9.6 109 425-544 42-167 (226)
193 PF08242 Methyltransf_12: Meth 97.9 8.9E-07 1.9E-11 76.4 -3.0 90 431-525 1-96 (99)
194 PF00398 RrnaAD: Ribosomal RNA 97.9 9.2E-05 2E-09 76.0 10.8 140 418-577 20-171 (262)
195 PRK04148 hypothetical protein; 97.8 0.0001 2.2E-09 69.3 9.5 79 426-517 16-96 (134)
196 PF04816 DUF633: Family of unk 97.8 7.6E-05 1.6E-09 74.7 8.8 70 430-505 1-72 (205)
197 smart00138 MeTrc Methyltransfe 97.8 6.6E-05 1.4E-09 77.4 8.0 94 426-525 99-235 (264)
198 PF05724 TPMT: Thiopurine S-me 97.8 5.6E-05 1.2E-09 76.1 7.2 97 424-525 35-148 (218)
199 PF05971 Methyltransf_10: Prot 97.7 4.1E-05 9E-10 80.6 5.3 83 427-511 103-189 (299)
200 cd00315 Cyt_C5_DNA_methylase C 97.6 0.00051 1.1E-08 71.2 11.8 116 429-562 2-134 (275)
201 KOG2671 Putative RNA methylase 97.6 3.4E-05 7.5E-10 82.0 2.4 86 423-513 205-298 (421)
202 KOG1271 Methyltransferases [Ge 97.5 0.00014 3.1E-09 71.7 6.3 93 427-525 68-174 (227)
203 TIGR00478 tly hemolysin TlyA f 97.5 0.00015 3.2E-09 73.7 6.4 59 409-467 55-118 (228)
204 KOG4300 Predicted methyltransf 97.5 0.00038 8.1E-09 70.1 8.7 104 429-546 79-188 (252)
205 COG3897 Predicted methyltransf 97.5 0.00013 2.7E-09 72.8 5.2 72 424-506 77-149 (218)
206 PF01555 N6_N4_Mtase: DNA meth 97.4 0.00021 4.7E-09 69.2 5.5 49 418-466 182-231 (231)
207 COG4106 Tam Trans-aconitate me 97.4 0.00071 1.5E-08 68.5 8.9 95 424-540 28-129 (257)
208 PF00145 DNA_methylase: C-5 cy 97.4 0.00033 7.1E-09 71.9 6.6 116 429-563 2-134 (335)
209 PF08003 Methyltransf_9: Prote 97.3 0.0014 3E-08 69.4 10.7 93 426-525 115-212 (315)
210 PHA01634 hypothetical protein 97.3 0.0006 1.3E-08 64.0 7.0 99 426-544 28-128 (156)
211 PRK11524 putative methyltransf 97.2 0.00051 1.1E-08 71.4 6.3 53 418-470 199-252 (284)
212 PF04445 SAM_MT: Putative SAM- 97.1 0.001 2.2E-08 68.0 6.9 79 424-507 71-159 (234)
213 PF00891 Methyltransf_2: O-met 97.1 0.0012 2.7E-08 66.1 7.5 100 424-546 98-205 (241)
214 KOG2915 tRNA(1-methyladenosine 97.1 0.0025 5.3E-08 66.5 9.4 97 424-525 103-202 (314)
215 COG0421 SpeE Spermidine syntha 97.0 0.0052 1.1E-07 64.5 11.5 93 428-525 78-183 (282)
216 PF08123 DOT1: Histone methyla 97.0 0.0037 8.1E-08 62.6 10.1 95 424-523 40-146 (205)
217 COG3963 Phospholipid N-methylt 97.0 0.0095 2.1E-07 58.4 12.4 95 424-525 46-149 (194)
218 PRK13699 putative methylase; P 97.0 0.0012 2.6E-08 66.9 6.5 53 418-470 154-207 (227)
219 COG2384 Predicted SAM-dependen 97.0 0.0013 2.9E-08 66.5 6.6 100 418-523 8-111 (226)
220 TIGR00006 S-adenosyl-methyltra 97.0 0.0063 1.4E-07 64.6 11.9 84 424-510 18-103 (305)
221 PRK11760 putative 23S rRNA C24 97.0 0.002 4.2E-08 69.3 7.7 88 424-525 209-296 (357)
222 PF13679 Methyltransf_32: Meth 96.9 0.002 4.2E-08 60.2 6.5 63 425-487 24-94 (141)
223 PF01269 Fibrillarin: Fibrilla 96.9 0.018 3.8E-07 58.7 13.5 161 409-587 51-227 (229)
224 PF01861 DUF43: Protein of unk 96.9 0.0049 1.1E-07 63.3 9.1 105 426-545 44-153 (243)
225 PF13578 Methyltransf_24: Meth 96.9 0.0012 2.7E-08 57.8 4.2 97 431-540 1-105 (106)
226 COG4262 Predicted spermidine s 96.8 0.011 2.4E-07 64.0 11.7 98 423-525 286-400 (508)
227 KOG3010 Methyltransferase [Gen 96.8 0.0036 7.9E-08 64.3 7.6 107 424-543 30-140 (261)
228 PF02527 GidB: rRNA small subu 96.8 0.0073 1.6E-07 59.6 9.5 95 423-525 44-141 (184)
229 COG0286 HsdM Type I restrictio 96.7 0.0019 4.1E-08 72.4 5.4 101 408-511 168-276 (489)
230 COG0270 Dcm Site-specific DNA 96.7 0.0029 6.2E-08 67.3 6.4 74 428-510 4-78 (328)
231 KOG2361 Predicted methyltransf 96.7 0.0038 8.2E-08 64.1 6.8 93 429-525 74-176 (264)
232 TIGR00675 dcm DNA-methyltransf 96.6 0.004 8.6E-08 65.9 6.5 96 430-544 1-111 (315)
233 PF01728 FtsJ: FtsJ-like methy 96.6 0.0092 2E-07 57.3 8.4 109 426-557 23-154 (181)
234 KOG1661 Protein-L-isoaspartate 96.5 0.0071 1.5E-07 61.1 7.1 95 423-525 79-186 (237)
235 KOG1541 Predicted protein carb 96.5 0.0038 8.2E-08 63.5 5.2 88 427-525 51-153 (270)
236 PF05148 Methyltransf_8: Hypot 96.4 0.02 4.3E-07 58.0 9.9 128 424-590 70-200 (219)
237 COG0357 GidB Predicted S-adeno 96.2 0.061 1.3E-06 54.6 12.2 104 427-546 68-174 (215)
238 PLN02232 ubiquinone biosynthes 96.2 0.021 4.5E-07 54.4 8.2 80 452-545 1-86 (160)
239 TIGR03439 methyl_EasF probable 96.0 0.074 1.6E-06 56.9 12.2 108 418-525 68-190 (319)
240 COG1889 NOP1 Fibrillarin-like 96.0 0.38 8.3E-06 48.8 16.3 163 409-586 54-228 (231)
241 PRK10458 DNA cytosine methylas 96.0 0.023 5E-07 63.6 8.6 80 427-510 88-180 (467)
242 KOG1975 mRNA cap methyltransfe 95.9 0.051 1.1E-06 58.2 10.1 106 419-525 109-230 (389)
243 PF01795 Methyltransf_5: MraW 95.8 0.033 7.2E-07 59.3 8.3 100 411-513 6-107 (310)
244 PF03291 Pox_MCEL: mRNA cappin 95.8 0.022 4.8E-07 61.0 7.1 99 426-525 62-179 (331)
245 COG0293 FtsJ 23S rRNA methylas 95.7 0.11 2.4E-06 52.4 11.2 139 424-585 43-201 (205)
246 KOG2899 Predicted methyltransf 95.5 0.015 3.2E-07 60.0 4.3 57 414-470 45-104 (288)
247 KOG1501 Arginine N-methyltrans 95.4 0.021 4.5E-07 63.1 5.3 55 429-483 69-124 (636)
248 PRK00536 speE spermidine synth 95.4 0.19 4.2E-06 52.4 12.1 91 425-525 71-164 (262)
249 PF05219 DREV: DREV methyltran 95.3 0.23 5.1E-06 51.8 12.4 102 426-543 94-200 (265)
250 PF06962 rRNA_methylase: Putat 95.2 0.058 1.3E-06 51.4 7.1 82 450-543 1-95 (140)
251 COG1189 Predicted rRNA methyla 95.1 0.12 2.5E-06 53.4 9.3 107 408-525 58-171 (245)
252 KOG4058 Uncharacterized conser 95.1 0.022 4.8E-07 55.0 3.8 70 418-487 62-134 (199)
253 KOG2198 tRNA cytosine-5-methyl 95.0 0.029 6.3E-07 60.8 4.9 86 424-510 153-247 (375)
254 PF11599 AviRa: RRNA methyltra 95.0 0.044 9.5E-07 55.8 5.7 62 410-471 32-100 (246)
255 TIGR00497 hsdM type I restrict 94.9 0.066 1.4E-06 60.2 7.5 102 406-511 195-305 (501)
256 PF05891 Methyltransf_PK: AdoM 94.8 0.11 2.4E-06 52.9 8.2 104 426-544 55-165 (218)
257 PF12147 Methyltransf_20: Puta 94.7 0.14 3.1E-06 54.2 8.9 97 426-525 135-242 (311)
258 COG4976 Predicted methyltransf 94.6 0.019 4.1E-07 58.9 2.2 89 427-525 126-218 (287)
259 PF07091 FmrO: Ribosomal RNA m 94.6 0.12 2.7E-06 53.5 8.0 77 420-505 99-177 (251)
260 PF02086 MethyltransfD12: D12 94.3 0.036 7.8E-07 55.8 3.4 47 419-465 11-59 (260)
261 COG1568 Predicted methyltransf 94.3 0.15 3.3E-06 53.7 7.9 94 426-525 152-250 (354)
262 PF06080 DUF938: Protein of un 93.9 0.15 3.4E-06 51.3 7.0 109 424-540 22-141 (204)
263 KOG3045 Predicted RNA methylas 93.7 0.5 1.1E-05 49.6 10.3 123 424-589 178-305 (325)
264 COG0275 Predicted S-adenosylme 93.7 0.58 1.2E-05 49.9 10.9 84 424-510 21-107 (314)
265 COG0863 DNA modification methy 93.3 0.18 3.8E-06 51.8 6.3 50 423-472 219-268 (302)
266 COG0500 SmtA SAM-dependent met 92.9 1 2.2E-05 37.3 9.4 90 430-525 52-148 (257)
267 PF04378 RsmJ: Ribosomal RNA s 92.9 0.34 7.4E-06 50.2 7.8 102 431-542 62-167 (245)
268 KOG4589 Cell division protein 92.1 1.6 3.5E-05 44.0 10.8 73 424-508 67-145 (232)
269 PF03059 NAS: Nicotianamine sy 92.0 0.94 2E-05 47.7 9.7 92 428-525 122-223 (276)
270 KOG0822 Protein kinase inhibit 91.7 0.15 3.2E-06 57.7 3.6 91 428-525 369-471 (649)
271 PRK11524 putative methyltransf 91.6 0.39 8.4E-06 50.1 6.4 45 477-525 9-73 (284)
272 COG1743 Adenine-specific DNA m 91.2 0.17 3.6E-06 59.4 3.5 49 423-471 87-135 (875)
273 PF07942 N2227: N2227-like pro 91.2 1.3 2.8E-05 46.5 9.7 44 427-472 57-100 (270)
274 PF05050 Methyltransf_21: Meth 91.1 0.3 6.5E-06 45.0 4.5 50 432-481 1-58 (167)
275 COG2961 ComJ Protein involved 91.1 0.87 1.9E-05 47.5 8.1 98 421-524 84-185 (279)
276 COG3129 Predicted SAM-dependen 90.6 0.26 5.7E-06 50.9 3.8 82 426-511 78-165 (292)
277 KOG3115 Methyltransferase-like 90.4 1.1 2.3E-05 45.8 7.8 98 426-525 60-176 (249)
278 COG1064 AdhP Zn-dependent alco 90.0 3.2 6.9E-05 45.1 11.6 96 424-542 164-261 (339)
279 PF00107 ADH_zinc_N: Zinc-bind 89.9 0.92 2E-05 40.5 6.4 91 436-543 1-92 (130)
280 KOG1201 Hydroxysteroid 17-beta 89.0 2 4.4E-05 45.7 9.0 58 426-486 37-97 (300)
281 PF07279 DUF1442: Protein of u 89.0 5.9 0.00013 40.5 11.9 102 426-540 41-149 (218)
282 PRK13699 putative methylase; P 88.7 0.89 1.9E-05 46.2 6.1 45 477-525 2-65 (227)
283 KOG1269 SAM-dependent methyltr 88.5 0.39 8.5E-06 52.4 3.5 107 423-544 107-219 (364)
284 KOG1596 Fibrillarin and relate 88.0 6.5 0.00014 41.2 11.6 131 383-525 114-254 (317)
285 PRK10611 chemotaxis methyltran 87.7 0.93 2E-05 47.9 5.6 93 428-525 117-255 (287)
286 KOG1709 Guanidinoacetate methy 86.3 7.5 0.00016 40.2 10.8 96 424-525 99-199 (271)
287 KOG2651 rRNA adenine N-6-methy 85.3 1.7 3.7E-05 47.8 6.1 53 414-466 135-194 (476)
288 PTZ00357 methyltransferase; Pr 85.3 1.5 3.2E-05 51.5 5.8 96 429-524 703-823 (1072)
289 KOG2912 Predicted DNA methylas 84.3 2 4.3E-05 46.4 6.0 79 431-511 107-190 (419)
290 COG3392 Adenine-specific DNA m 81.9 1 2.2E-05 47.3 2.7 39 423-461 24-62 (330)
291 COG1063 Tdh Threonine dehydrog 80.2 18 0.00038 38.9 11.5 105 424-545 166-274 (350)
292 PRK01747 mnmC bifunctional tRN 79.8 11 0.00024 43.8 10.6 93 428-525 59-199 (662)
293 PF10354 DUF2431: Domain of un 79.5 4.3 9.3E-05 39.5 5.9 101 435-545 5-130 (166)
294 PF09243 Rsm22: Mitochondrial 77.2 3.2 6.9E-05 43.3 4.6 42 427-468 34-78 (274)
295 KOG3924 Putative protein methy 76.5 12 0.00025 41.7 8.7 91 419-514 183-287 (419)
296 cd08254 hydroxyacyl_CoA_DH 6-h 75.3 30 0.00065 35.4 11.1 92 424-525 163-256 (338)
297 PF03141 Methyltransf_29: Puta 74.5 6 0.00013 44.9 6.1 70 396-465 81-159 (506)
298 PF10237 N6-adenineMlase: Prob 73.3 31 0.00068 33.7 10.0 81 420-515 19-102 (162)
299 cd08294 leukotriene_B4_DH_like 73.1 29 0.00063 35.5 10.4 88 424-525 141-234 (329)
300 cd08295 double_bond_reductase_ 73.0 33 0.00071 35.8 10.9 89 424-525 149-244 (338)
301 KOG2793 Putative N2,N2-dimethy 73.0 7.5 0.00016 40.5 5.9 78 426-507 86-170 (248)
302 KOG0024 Sorbitol dehydrogenase 72.2 6.2 0.00013 42.8 5.2 44 423-466 166-212 (354)
303 PRK07063 short chain dehydroge 72.1 39 0.00086 33.6 10.8 80 427-507 7-94 (260)
304 PLN03154 putative allyl alcoho 71.8 37 0.0008 36.1 11.1 97 424-541 156-259 (348)
305 cd08283 FDH_like_1 Glutathione 71.5 44 0.00095 35.9 11.7 44 424-467 182-228 (386)
306 PRK10309 galactitol-1-phosphat 71.5 41 0.00089 35.2 11.2 103 424-543 158-263 (347)
307 PRK13849 putative crown gall t 71.3 13 0.00027 37.9 7.1 71 441-511 23-95 (231)
308 PRK05867 short chain dehydroge 71.3 37 0.00081 33.7 10.4 79 426-507 8-94 (253)
309 KOG3178 Hydroxyindole-O-methyl 71.2 15 0.00032 40.1 7.9 95 426-542 177-277 (342)
310 cd08281 liver_ADH_like1 Zinc-d 69.5 41 0.0009 35.8 10.9 92 424-525 189-283 (371)
311 PRK09880 L-idonate 5-dehydroge 69.2 35 0.00076 35.8 10.2 99 424-542 167-268 (343)
312 KOG0919 C-5 cytosine-specific 68.2 3.9 8.4E-05 42.8 2.6 73 428-509 4-79 (338)
313 KOG2360 Proliferation-associat 68.2 5 0.00011 44.3 3.6 81 425-510 212-295 (413)
314 COG1062 AdhC Zn-dependent alco 68.0 10 0.00022 41.5 5.7 88 424-524 183-277 (366)
315 PF07015 VirC1: VirC1 protein; 67.4 20 0.00044 37.0 7.6 70 443-512 25-96 (231)
316 PRK05854 short chain dehydroge 67.2 53 0.0011 34.3 10.9 81 426-507 13-101 (313)
317 PRK07062 short chain dehydroge 67.1 56 0.0012 32.6 10.7 82 426-507 7-95 (265)
318 KOG2940 Predicted methyltransf 66.7 4.4 9.4E-05 42.2 2.6 78 419-505 65-143 (325)
319 TIGR03201 dearomat_had 6-hydro 66.1 56 0.0012 34.4 11.0 97 424-525 164-265 (349)
320 PRK06172 short chain dehydroge 65.9 64 0.0014 31.9 10.8 79 426-507 6-92 (253)
321 PF02254 TrkA_N: TrkA-N domain 65.6 32 0.00069 30.1 7.7 67 433-511 2-74 (116)
322 TIGR03451 mycoS_dep_FDH mycoth 65.6 51 0.0011 34.9 10.5 93 424-525 174-269 (358)
323 PRK08945 putative oxoacyl-(acy 65.5 47 0.001 32.7 9.7 77 426-506 11-99 (247)
324 PF01739 CheR: CheR methyltran 65.2 8.1 0.00018 38.6 4.2 93 427-525 32-168 (196)
325 KOG3201 Uncharacterized conser 65.2 9.7 0.00021 37.8 4.5 96 426-525 29-133 (201)
326 TIGR02825 B4_12hDH leukotriene 65.2 70 0.0015 33.1 11.3 88 424-525 136-230 (325)
327 KOG2920 Predicted methyltransf 64.9 4.2 9.1E-05 43.1 2.2 41 422-462 112-153 (282)
328 PRK07904 short chain dehydroge 64.8 43 0.00094 33.7 9.4 80 423-507 4-95 (253)
329 PRK07677 short chain dehydroge 64.5 63 0.0014 32.0 10.5 77 428-507 2-86 (252)
330 PRK07231 fabG 3-ketoacyl-(acyl 64.3 53 0.0011 32.1 9.7 77 427-507 5-89 (251)
331 PRK09242 tropinone reductase; 64.1 60 0.0013 32.2 10.2 82 426-507 8-96 (257)
332 PRK09424 pntA NAD(P) transhydr 64.0 11 0.00024 43.1 5.5 42 425-466 163-206 (509)
333 PLN02780 ketoreductase/ oxidor 63.8 44 0.00095 35.3 9.6 60 426-485 52-114 (320)
334 PRK08862 short chain dehydroge 63.7 64 0.0014 32.1 10.3 79 427-507 5-91 (227)
335 PRK07102 short chain dehydroge 63.3 50 0.0011 32.5 9.4 76 429-507 3-84 (243)
336 PRK06124 gluconate 5-dehydroge 63.2 84 0.0018 31.1 11.1 79 426-507 10-96 (256)
337 cd05278 FDH_like Formaldehyde 63.1 85 0.0018 32.5 11.5 93 424-525 165-260 (347)
338 PRK07831 short chain dehydroge 63.0 79 0.0017 31.5 10.9 81 426-507 16-105 (262)
339 PRK07576 short chain dehydroge 62.8 70 0.0015 32.2 10.5 79 426-507 8-94 (264)
340 PF03721 UDPG_MGDP_dh_N: UDP-g 62.8 7.2 0.00016 38.4 3.3 30 436-465 7-40 (185)
341 PRK05876 short chain dehydroge 61.6 77 0.0017 32.3 10.7 78 427-507 6-91 (275)
342 KOG2352 Predicted spermine/spe 61.6 26 0.00057 39.8 7.7 122 426-556 295-432 (482)
343 COG0677 WecC UDP-N-acetyl-D-ma 61.3 49 0.0011 37.1 9.5 96 435-543 15-130 (436)
344 COG0604 Qor NADPH:quinone redu 60.7 89 0.0019 33.4 11.3 92 424-525 140-234 (326)
345 PRK06139 short chain dehydroge 60.5 73 0.0016 33.9 10.6 80 426-507 6-92 (330)
346 cd08239 THR_DH_like L-threonin 59.6 81 0.0018 32.7 10.6 101 424-542 161-264 (339)
347 PRK06194 hypothetical protein; 59.0 80 0.0017 31.9 10.2 78 427-507 6-91 (287)
348 cd05188 MDR Medium chain reduc 58.4 1.4E+02 0.003 29.0 11.5 92 424-525 132-225 (271)
349 PRK06949 short chain dehydroge 57.9 96 0.0021 30.6 10.4 79 426-507 8-94 (258)
350 cd08261 Zn_ADH7 Alcohol dehydr 57.9 1.2E+02 0.0026 31.4 11.5 93 424-525 157-251 (337)
351 PRK07478 short chain dehydroge 57.7 1.1E+02 0.0024 30.3 10.8 76 427-507 6-91 (254)
352 PRK06720 hypothetical protein; 57.6 1.2E+02 0.0027 29.2 10.7 80 426-507 15-101 (169)
353 PRK07326 short chain dehydroge 57.2 84 0.0018 30.5 9.7 76 427-506 6-89 (237)
354 PRK08340 glucose-1-dehydrogena 57.1 1E+02 0.0022 30.8 10.4 65 440-507 16-84 (259)
355 PRK07791 short chain dehydroge 57.1 88 0.0019 32.1 10.3 78 426-507 5-100 (286)
356 cd08293 PTGR2 Prostaglandin re 56.3 93 0.002 32.3 10.4 89 424-525 150-247 (345)
357 PRK05866 short chain dehydroge 55.9 1.1E+02 0.0025 31.5 10.9 78 427-507 40-125 (293)
358 PRK06079 enoyl-(acyl carrier p 55.7 82 0.0018 31.5 9.5 77 426-507 6-91 (252)
359 PRK07109 short chain dehydroge 55.4 1.2E+02 0.0026 32.2 11.2 78 427-507 8-93 (334)
360 TIGR00571 dam DNA adenine meth 55.1 17 0.00038 37.6 4.7 43 418-462 16-59 (266)
361 PRK07890 short chain dehydroge 54.9 1.4E+02 0.003 29.4 10.9 79 426-507 4-90 (258)
362 PRK08303 short chain dehydroge 54.8 94 0.002 32.6 10.2 79 426-507 7-103 (305)
363 PRK07097 gluconate 5-dehydroge 54.2 1.3E+02 0.0028 30.1 10.8 80 426-507 9-95 (265)
364 PRK08415 enoyl-(acyl carrier p 54.2 1.1E+02 0.0024 31.4 10.4 79 426-507 4-91 (274)
365 COG1352 CheR Methylase of chem 54.1 25 0.00053 37.1 5.6 69 400-468 64-149 (268)
366 PF05430 Methyltransf_30: S-ad 53.5 44 0.00095 31.2 6.6 82 477-583 33-121 (124)
367 PRK09496 trkA potassium transp 53.2 69 0.0015 35.0 9.2 77 427-513 231-311 (453)
368 PRK08594 enoyl-(acyl carrier p 52.7 93 0.002 31.4 9.4 77 426-506 6-94 (257)
369 cd08238 sorbose_phosphate_red 52.6 1.9E+02 0.004 31.5 12.4 95 424-525 173-281 (410)
370 PRK12429 3-hydroxybutyrate deh 52.6 1.2E+02 0.0025 29.8 9.9 78 427-507 4-89 (258)
371 PRK13394 3-hydroxybutyrate deh 51.6 1.4E+02 0.003 29.4 10.3 78 427-507 7-92 (262)
372 PRK10037 cell division protein 51.3 83 0.0018 31.9 8.8 21 440-460 22-42 (250)
373 PRK08251 short chain dehydroge 51.1 1.7E+02 0.0036 28.7 10.8 79 428-507 3-89 (248)
374 PRK08589 short chain dehydroge 50.9 1.4E+02 0.0031 30.1 10.5 77 427-507 6-90 (272)
375 PRK07523 gluconate 5-dehydroge 50.9 1.3E+02 0.0029 29.6 10.2 79 426-507 9-95 (255)
376 PRK07533 enoyl-(acyl carrier p 50.8 1E+02 0.0022 30.9 9.4 77 426-507 9-96 (258)
377 KOG3987 Uncharacterized conser 50.5 6.1 0.00013 40.6 0.5 101 426-544 112-220 (288)
378 PRK07024 short chain dehydroge 50.3 1.2E+02 0.0026 30.2 9.7 74 429-506 4-85 (257)
379 PRK06125 short chain dehydroge 50.3 1.4E+02 0.0029 29.8 10.1 77 427-507 7-89 (259)
380 PRK09186 flagellin modificatio 50.1 1.8E+02 0.004 28.5 10.9 81 426-507 3-91 (256)
381 PRK08265 short chain dehydroge 49.8 1.4E+02 0.0029 30.0 10.1 75 427-507 6-88 (261)
382 cd08237 ribitol-5-phosphate_DH 49.6 27 0.00058 36.9 5.2 93 424-542 161-258 (341)
383 PF01210 NAD_Gly3P_dh_N: NAD-d 49.5 56 0.0012 30.9 6.8 84 430-524 2-95 (157)
384 PRK07666 fabG 3-ketoacyl-(acyl 49.5 1.6E+02 0.0035 28.8 10.3 78 427-507 7-92 (239)
385 PF04989 CmcI: Cephalosporin h 49.2 73 0.0016 32.5 7.9 115 408-525 15-140 (206)
386 PHA02518 ParA-like protein; Pr 49.2 37 0.0008 32.7 5.7 60 443-510 24-87 (211)
387 PRK08213 gluconate 5-dehydroge 49.2 1.5E+02 0.0033 29.3 10.3 79 426-507 11-97 (259)
388 PRK12939 short chain dehydroge 49.1 1.6E+02 0.0035 28.6 10.3 77 427-506 7-91 (250)
389 PRK06197 short chain dehydroge 48.9 1.6E+02 0.0035 30.3 10.7 81 426-507 15-103 (306)
390 PRK06914 short chain dehydroge 48.9 65 0.0014 32.4 7.6 78 427-507 3-89 (280)
391 PRK05599 hypothetical protein; 48.8 1.4E+02 0.003 29.8 9.9 74 430-507 3-85 (246)
392 PRK08217 fabG 3-ketoacyl-(acyl 48.8 2.1E+02 0.0045 27.9 11.0 79 426-507 4-90 (253)
393 KOG2782 Putative SAM dependent 48.7 13 0.00029 38.4 2.6 88 425-514 42-133 (303)
394 PF11899 DUF3419: Protein of u 48.5 31 0.00067 38.1 5.6 44 424-468 33-77 (380)
395 PRK06505 enoyl-(acyl carrier p 48.5 1.3E+02 0.0029 30.6 9.9 79 426-507 6-93 (271)
396 PRK07035 short chain dehydroge 48.5 1.9E+02 0.0041 28.4 10.8 78 427-507 8-93 (252)
397 PRK08293 3-hydroxybutyryl-CoA 47.5 1.4E+02 0.003 31.0 10.0 40 429-468 5-46 (287)
398 TIGR02822 adh_fam_2 zinc-bindi 47.5 35 0.00076 35.9 5.6 92 424-542 163-256 (329)
399 cd08285 NADP_ADH NADP(H)-depen 47.4 2.4E+02 0.0052 29.5 11.9 93 424-525 164-259 (351)
400 PRK08267 short chain dehydroge 47.1 1.2E+02 0.0025 30.2 9.1 74 429-507 3-85 (260)
401 PRK12826 3-ketoacyl-(acyl-carr 46.9 1.7E+02 0.0037 28.5 10.0 78 427-507 6-91 (251)
402 PRK08339 short chain dehydroge 46.7 71 0.0015 32.3 7.5 81 426-507 7-93 (263)
403 PRK12384 sorbitol-6-phosphate 46.6 1.7E+02 0.0036 29.0 10.0 79 428-507 3-89 (259)
404 PRK06200 2,3-dihydroxy-2,3-dih 46.2 1.8E+02 0.0039 28.9 10.3 77 426-507 5-88 (263)
405 COG2933 Predicted SAM-dependen 46.1 37 0.0008 36.3 5.3 73 424-510 209-281 (358)
406 PF07757 AdoMet_MTase: Predict 46.1 15 0.00033 34.0 2.3 34 426-459 58-91 (112)
407 PRK09291 short chain dehydroge 46.0 1.5E+02 0.0034 29.1 9.7 71 429-506 4-80 (257)
408 PLN03209 translocon at the inn 45.8 88 0.0019 36.6 8.8 80 424-507 77-167 (576)
409 PRK11064 wecC UDP-N-acetyl-D-m 45.6 1.2E+02 0.0026 33.7 9.6 30 435-464 9-42 (415)
410 PRK07889 enoyl-(acyl carrier p 45.3 1.3E+02 0.0028 30.2 9.2 77 426-507 6-93 (256)
411 PRK10904 DNA adenine methylase 45.3 29 0.00063 36.2 4.6 44 418-463 19-62 (271)
412 PRK08643 acetoin reductase; Va 45.1 2.2E+02 0.0048 28.1 10.6 77 428-507 3-87 (256)
413 PRK12859 3-ketoacyl-(acyl-carr 44.4 1.9E+02 0.0042 28.8 10.2 80 426-507 5-104 (256)
414 PRK07814 short chain dehydroge 44.3 2.5E+02 0.0054 28.1 11.0 78 426-506 9-94 (263)
415 KOG1098 Putative SAM-dependent 44.3 19 0.00041 42.1 3.2 37 423-459 41-80 (780)
416 PF03446 NAD_binding_2: NAD bi 43.9 1.3E+02 0.0027 28.6 8.3 59 434-510 6-68 (163)
417 PRK08085 gluconate 5-dehydroge 43.8 2.3E+02 0.005 28.0 10.5 79 426-507 8-94 (254)
418 PRK07774 short chain dehydroge 43.7 2.3E+02 0.0049 27.7 10.4 78 427-507 6-91 (250)
419 PRK08703 short chain dehydroge 43.7 1.9E+02 0.0042 28.2 9.9 56 427-484 6-65 (239)
420 PRK05717 oxidoreductase; Valid 43.6 1.5E+02 0.0033 29.3 9.3 74 426-507 9-92 (255)
421 cd08291 ETR_like_1 2-enoyl thi 43.6 1.9E+02 0.0041 29.9 10.3 41 426-466 143-186 (324)
422 PRK05650 short chain dehydroge 43.5 2.3E+02 0.005 28.4 10.6 75 430-507 3-85 (270)
423 TIGR03206 benzo_BadH 2-hydroxy 43.5 2.2E+02 0.0048 27.7 10.3 78 427-507 3-88 (250)
424 PRK05872 short chain dehydroge 43.2 1.8E+02 0.0038 30.0 9.9 78 426-507 8-93 (296)
425 KOG0725 Reductases with broad 43.0 1.4E+02 0.003 31.2 9.1 82 426-507 7-97 (270)
426 PRK08277 D-mannonate oxidoredu 42.6 2.5E+02 0.0054 28.2 10.7 77 427-506 10-94 (278)
427 PRK03659 glutathione-regulated 42.5 90 0.0019 36.3 8.4 65 434-510 405-475 (601)
428 PLN02253 xanthoxin dehydrogena 42.5 2.2E+02 0.0048 28.6 10.3 76 427-506 18-101 (280)
429 PF05575 V_cholerae_RfbT: Vibr 42.3 15 0.00034 36.5 1.8 56 417-472 70-127 (286)
430 PRK07454 short chain dehydroge 41.5 3.2E+02 0.0069 26.7 11.1 78 427-507 6-91 (241)
431 PLN02740 Alcohol dehydrogenase 40.4 45 0.00097 35.8 5.2 88 424-524 196-291 (381)
432 PRK06603 enoyl-(acyl carrier p 39.9 2.3E+02 0.0051 28.5 10.0 79 426-507 7-94 (260)
433 PRK06181 short chain dehydroge 39.5 3.1E+02 0.0068 27.1 10.8 75 429-506 3-85 (263)
434 KOG1099 SAM-dependent methyltr 39.5 28 0.00061 36.4 3.3 71 425-507 40-123 (294)
435 PRK06940 short chain dehydroge 39.4 1.9E+02 0.004 29.5 9.3 75 429-507 4-84 (275)
436 TIGR02818 adh_III_F_hyde S-(hy 39.3 52 0.0011 35.1 5.5 43 424-466 183-228 (368)
437 COG4798 Predicted methyltransf 38.9 57 0.0012 33.5 5.2 101 424-525 46-159 (238)
438 PRK06935 2-deoxy-D-gluconate 3 38.8 2.2E+02 0.0048 28.2 9.6 78 426-507 14-99 (258)
439 PRK07417 arogenate dehydrogena 38.4 2.2E+02 0.0048 29.4 9.8 37 430-466 3-41 (279)
440 PRK12481 2-deoxy-D-gluconate 3 38.2 2.6E+02 0.0057 27.8 10.0 77 426-507 7-91 (251)
441 PRK08993 2-deoxy-D-gluconate 3 38.2 2.6E+02 0.0055 27.8 9.9 77 426-507 9-93 (253)
442 PRK12748 3-ketoacyl-(acyl-carr 37.8 2.7E+02 0.0058 27.6 10.0 78 427-507 5-103 (256)
443 PRK06138 short chain dehydroge 37.8 3.2E+02 0.0068 26.7 10.4 77 427-507 5-89 (252)
444 PRK07792 fabG 3-ketoacyl-(acyl 37.4 2.2E+02 0.0047 29.6 9.6 79 426-506 11-96 (306)
445 PLN02989 cinnamyl-alcohol dehy 37.4 1.1E+02 0.0025 31.5 7.5 75 426-506 4-84 (325)
446 PRK05855 short chain dehydroge 37.3 2.7E+02 0.0059 30.9 10.9 78 427-507 315-400 (582)
447 PRK05875 short chain dehydroge 37.1 3.7E+02 0.008 26.9 10.9 80 427-507 7-94 (276)
448 KOG1562 Spermidine synthase [A 36.7 2.1E+02 0.0046 31.1 9.2 79 424-506 119-202 (337)
449 PF11968 DUF3321: Putative met 36.2 50 0.0011 34.0 4.4 127 428-588 53-193 (219)
450 TIGR03325 BphB_TodD cis-2,3-di 36.0 2.4E+02 0.0052 28.1 9.3 76 426-507 4-87 (262)
451 PRK03562 glutathione-regulated 35.8 75 0.0016 37.2 6.4 61 435-507 406-472 (621)
452 PRK08690 enoyl-(acyl carrier p 35.7 2.5E+02 0.0055 28.2 9.5 79 426-507 5-92 (261)
453 PRK06196 oxidoreductase; Provi 35.7 2.5E+02 0.0055 29.1 9.8 75 426-507 25-107 (315)
454 PRK06500 short chain dehydroge 35.5 3.4E+02 0.0074 26.4 10.2 75 427-507 6-88 (249)
455 cd08230 glucose_DH Glucose deh 35.3 69 0.0015 33.8 5.6 88 424-525 170-262 (355)
456 cd00401 AdoHcyase S-adenosyl-L 35.3 68 0.0015 35.9 5.7 45 422-466 197-243 (413)
457 PRK07453 protochlorophyllide o 35.3 3.1E+02 0.0068 28.4 10.4 77 427-506 6-90 (322)
458 PRK07806 short chain dehydroge 35.1 3.8E+02 0.0082 26.2 10.5 78 427-507 6-92 (248)
459 KOG1205 Predicted dehydrogenas 35.1 2.5E+02 0.0054 30.0 9.5 79 426-506 11-98 (282)
460 cd08233 butanediol_DH_like (2R 34.7 4E+02 0.0086 27.8 11.1 93 424-525 170-265 (351)
461 PF00072 Response_reg: Respons 34.6 2.7E+02 0.0059 23.2 8.4 66 451-522 1-69 (112)
462 PRK06113 7-alpha-hydroxysteroi 34.5 4.5E+02 0.0097 26.0 11.0 79 426-507 10-96 (255)
463 PF02737 3HCDH_N: 3-hydroxyacy 34.1 89 0.0019 30.5 5.7 41 430-470 2-44 (180)
464 PRK09496 trkA potassium transp 33.9 1.5E+02 0.0032 32.5 8.0 70 434-512 5-78 (453)
465 PRK12823 benD 1,6-dihydroxycyc 33.8 3.7E+02 0.0079 26.6 10.2 77 427-507 8-92 (260)
466 PRK10669 putative cation:proto 33.7 85 0.0018 35.9 6.3 68 434-511 422-493 (558)
467 PRK07074 short chain dehydroge 33.5 3.9E+02 0.0085 26.3 10.4 74 429-507 4-85 (257)
468 PRK08159 enoyl-(acyl carrier p 33.4 3.2E+02 0.0069 27.9 9.9 79 426-507 9-96 (272)
469 PRK08416 7-alpha-hydroxysteroi 33.4 4E+02 0.0088 26.5 10.5 81 426-507 7-95 (260)
470 KOG1208 Dehydrogenases with di 33.3 2.6E+02 0.0055 30.1 9.4 74 430-505 40-120 (314)
471 PRK12829 short chain dehydroge 33.1 2.4E+02 0.0053 27.7 8.8 77 426-507 10-94 (264)
472 COG0569 TrkA K+ transport syst 32.9 2.2E+02 0.0047 28.9 8.4 71 434-514 5-81 (225)
473 PRK10538 malonic semialdehyde 32.8 2.5E+02 0.0054 27.7 8.8 67 435-506 7-81 (248)
474 PRK06484 short chain dehydroge 32.6 2.7E+02 0.0059 31.0 9.9 77 426-507 4-87 (520)
475 PRK07370 enoyl-(acyl carrier p 32.2 2.4E+02 0.0051 28.4 8.6 80 426-507 5-95 (258)
476 PRK07067 sorbitol dehydrogenas 32.0 3.7E+02 0.008 26.5 9.9 74 427-506 6-87 (257)
477 COG1748 LYS9 Saccharopine dehy 31.9 2E+02 0.0043 32.2 8.5 81 428-520 2-90 (389)
478 PRK06130 3-hydroxybutyryl-CoA 31.9 4.3E+02 0.0093 27.5 10.7 40 429-468 6-47 (311)
479 TIGR03026 NDP-sugDHase nucleot 31.9 5.1E+02 0.011 28.4 11.8 32 435-466 6-41 (411)
480 TIGR00692 tdh L-threonine 3-de 31.8 5.5E+02 0.012 26.6 11.5 94 423-525 158-254 (340)
481 COG2130 Putative NADP-dependen 31.7 4.1E+02 0.0089 29.1 10.4 93 423-525 147-242 (340)
482 cd02037 MRP-like MRP (Multiple 31.6 48 0.001 31.3 3.3 59 441-511 21-79 (169)
483 PRK07832 short chain dehydroge 31.5 2.7E+02 0.0059 27.9 9.0 71 436-507 8-86 (272)
484 KOG0023 Alcohol dehydrogenase, 31.4 2.3E+02 0.0049 31.3 8.5 92 424-525 179-272 (360)
485 TIGR01963 PHB_DH 3-hydroxybuty 31.3 4.1E+02 0.0089 25.9 10.0 75 430-507 4-86 (255)
486 PLN02662 cinnamyl-alcohol dehy 31.3 1.7E+02 0.0038 29.9 7.6 74 427-506 4-83 (322)
487 PRK06701 short chain dehydroge 31.2 3.9E+02 0.0084 27.5 10.2 78 426-506 45-131 (290)
488 PRK07201 short chain dehydroge 31.2 3.5E+02 0.0077 31.0 10.8 78 427-507 371-456 (657)
489 TIGR02632 RhaD_aldol-ADH rhamn 31.1 3.6E+02 0.0078 31.9 11.0 81 426-507 413-501 (676)
490 KOG0022 Alcohol dehydrogenase, 31.1 87 0.0019 34.3 5.4 43 424-466 190-235 (375)
491 cd08263 Zn_ADH10 Alcohol dehyd 31.0 5.9E+02 0.013 26.8 11.8 93 424-525 185-280 (367)
492 PRK05993 short chain dehydroge 31.0 2.7E+02 0.0059 28.2 8.9 71 427-506 4-83 (277)
493 PRK13705 plasmid-partitioning 30.9 1.1E+02 0.0024 33.6 6.5 19 442-460 129-148 (388)
494 PRK06484 short chain dehydroge 30.9 3.4E+02 0.0074 30.2 10.4 75 426-506 268-350 (520)
495 PRK07825 short chain dehydroge 30.3 3.8E+02 0.0082 26.8 9.7 74 427-507 5-86 (273)
496 PF00106 adh_short: short chai 30.3 3.2E+02 0.007 24.8 8.6 72 434-507 6-88 (167)
497 PRK05786 fabG 3-ketoacyl-(acyl 30.3 1.6E+02 0.0035 28.5 6.9 79 426-508 4-90 (238)
498 TIGR03366 HpnZ_proposed putati 30.3 77 0.0017 32.3 4.8 89 425-525 119-211 (280)
499 KOG2798 Putative trehalase [Ca 30.2 92 0.002 34.1 5.4 35 427-461 151-185 (369)
500 PRK06114 short chain dehydroge 30.0 5E+02 0.011 25.7 10.5 79 426-507 7-94 (254)
No 1
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=100.00 E-value=7.3e-66 Score=542.05 Aligned_cols=385 Identities=43% Similarity=0.639 Sum_probs=332.1
Q ss_pred ccccccccceeeeeeeeeeecccchHHHHHHhhccccCCccccccccccCCchhhHHHhhcCCCCCCCCCCCCCCCCCCC
Q 007525 92 KAFIDETHFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGSHGGNEDFSGVVG 171 (600)
Q Consensus 92 ~~~ld~~~f~~~~~~~a~rvp~~~~~~~~~~l~~~~l~~pr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (600)
=..+|++.|..++++.|+++|.+.|+...+++.+..++.||++.|.++|-|.-
T Consensus 30 ~~~~~~~~~~tt~~l~al~~~~e~vs~~ir~~~~~~~r~p~i~~iie~~kd~l--------------------------- 82 (495)
T KOG2078|consen 30 MCMFDRSLFKTTLPLGALKLPGEPVSDDIRLAKIGILRDPRIPKIIEDPKDVL--------------------------- 82 (495)
T ss_pred EEEEehhhhhcccccchhhcCCcchHHHHHHhhhhhhccCCCCccccCCcccc---------------------------
Confidence 45689999999999999999999999999999999999999999998754420
Q ss_pred CccchhhHHHHHhhhccccccchhhhhHHHhHHHHhhhhhhcccCCCCCCCCcceeeehhhHHhhhhccccCcccCCCcc
Q 007525 172 DEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEGNGRKGELYVVEVVEEERKEMSGLLGDEFRGGEK 251 (600)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (600)
T Consensus 83 -------------------------------------------------------------------------------- 82 (495)
T KOG2078|consen 83 -------------------------------------------------------------------------------- 82 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceeEEecccccccccCCCChHHHHHHhhhhcccCCCCCeeEEEeeeeecccccChHHHHHhcCCCCCCCCeeEEEEC
Q 007525 252 WRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPSAFETVG 331 (600)
Q Consensus 252 ~~~~~rllLl~~~~~~~~~~~~p~~~~~~l~e~~~~~~~~~~e~v~~~l~l~Y~~~~~~eiL~~~LP~~~~iPssfd~iG 331 (600)
..+|++.+++.++... +.+|+..+-.++... ...++++++++.|+|+||+++||++++||++.+.|+||.++|
T Consensus 83 --~~tr~~~ls~~rv~~d-dsf~~~~ll~~e~lN----~~~~~~i~~~~~L~yE~w~~keilRavlpe~e~~~s~ft~~G 155 (495)
T KOG2078|consen 83 --EFTRLVELSPSRVPAD-DSFPEEELLVLELLN----WPELEIIPHELELTYEYWKAKEILRAVLPEEEDVPSSFTITG 155 (495)
T ss_pred --cceeEEEeeccccccc-ccchHHHHHHhhhcC----cccceeeccccccchhhhhHHHHHHhhCcccccccccceeee
Confidence 0367889998876544 337776665544321 136899999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecC
Q 007525 332 HIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNS 411 (600)
Q Consensus 332 ~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~ 411 (600)
||+|+|++++.+|++..||++++||+ +.+++|++|.+.|++.||++++++|+|+.+++|+++|+|++|++|++++|||+
T Consensus 156 hIaHLNl~~e~lpfk~iI~~Vi~DK~-n~~ktvv~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWns 234 (495)
T KOG2078|consen 156 HIAHLNLRDEQLPFKRIIGQVIYDKN-NLIKTVVNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNS 234 (495)
T ss_pred eeEEeeccchhccHHHHHHHHhhccC-CCceEeeecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeec
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCc-EEEEEcChHHHHHH
Q 007525 412 KLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKK-IEVFNMDGRRFIDA 490 (600)
Q Consensus 412 Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nr-V~~i~gDare~l~~ 490 (600)
|+++||.|+...+++|++|+|+|||+|+|++||++++|+|+|+|+||+|++||+.|+++|++... |+++++||.+|+++
T Consensus 235 RL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 235 RLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred cchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999765 99999999999952
Q ss_pred -------HHHh-----------------h--------cCCcccEEEeCCCcchHHHHHHHHHHhcC-CCCCCCCCccEEE
Q 007525 491 -------MFAS-----------------Q--------KAHKITQVVMNLPNDATEFLDAFRGIYRD-RPEDAKFTFPKIH 537 (600)
Q Consensus 491 -------l~~~-----------------~--------~~~~fD~VVmNpP~~a~eFLdaa~~lLk~-~~~~g~~~~p~IH 537 (600)
+.+. + .....+|++||+|+.+.+||..|.+.+.. ++++ ...+|+||
T Consensus 315 e~~~~~~~I~~~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d-~~~lplvh 393 (495)
T KOG2078|consen 315 EPLPYKRLIADEVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPID-KTPLPLVH 393 (495)
T ss_pred CCchhhhHHHHHHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccc-cccceeEE
Confidence 1100 0 01125899999999999999999999987 4332 34678999
Q ss_pred EEeccC---CCCCchh-HHHHHHHHHhhcc---cceEEEEeEEecCCCcEEEEEEEeccccc
Q 007525 538 LYGFSK---ARDPEFD-FHERIRIALVEVA---VNVEMRRVRLVAPGKWMLCASFVLPESVA 592 (600)
Q Consensus 538 vY~F~k---~~d~~~d-i~eRI~~~L~~~~---~~~~v~~VR~VAP~K~mycvsFrlp~~v~ 592 (600)
||||++ ......+ +..|+...++-.. ..+.+|.||+|||+|.|||++|++|..++
T Consensus 394 cy~F~k~~~~~~s~e~~V~ar~~~~~kv~~e~~~~~~~h~VR~VapnK~M~ca~~~lp~~~l 455 (495)
T KOG2078|consen 394 CYCFSKLFCDVSSTEDLVTARIVAALKVFAEDGALVSLHLVRKVAPNKEMYCASFQLPANVL 455 (495)
T ss_pred EEEEeecccCCCchHHHHHHHHHhhcceeeccccceeeeeeeccCCCcccchhhhhcHHHHh
Confidence 999999 3332223 5555544443222 23589999999999999999999999887
No 2
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=1.2e-51 Score=432.59 Aligned_cols=266 Identities=33% Similarity=0.506 Sum_probs=240.7
Q ss_pred ChHHHHHhcCCCCC---CCCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEe
Q 007525 308 LMNEILEALLPKGM---IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLA 384 (600)
Q Consensus 308 ~~~eiL~~~LP~~~---~iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLa 384 (600)
+++++++..+|.+. .+|++|+++||||+++++++..+|+..|++++++.+ +++++|+.+...+.|++|.+.+++||
T Consensus 68 ~l~~~~~~~~~~~~~~~~~p~~~~iiGdIai~~~~~e~~~~~~~i~~ai~~~~-~~vk~V~~k~~~v~G~~R~~~le~la 146 (341)
T COG2520 68 NLKEILSDRLPEEVLRELVPSSFDIIGDIAILSIPDELEPYKREIAEAILRVH-GKVKAVLLKEGPVAGEFRVPRLEVLA 146 (341)
T ss_pred HHHHHhhccchhhhhhhcCCcceEEEccEEEEeCCcccchHHHHHHHHHHhhc-cCeeEEEEecCccCCeEeccceEEee
Confidence 46677777666653 289999999999999999998789999999999998 88999999999899999999999999
Q ss_pred cCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHH
Q 007525 385 GNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDY 463 (600)
Q Consensus 385 Ge~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~ 463 (600)
|+..++|.++||||+|++|++++|||+|+++||.|+++++.+|++|||||||+|||||++|++|+ +|+|+|+||+|+++
T Consensus 147 Ge~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 147 GERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred cCCCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 49999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 464 LERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 464 l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++|+++|+++++|++++||++++..++ ..+|+|+|++|.++.+|++.++.+++.+ ++||+|.|++
T Consensus 227 L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~aDrIim~~p~~a~~fl~~A~~~~k~~--------g~iHyy~~~~ 292 (341)
T COG2520 227 LKENIRLNKVEGRVEPILGDAREVAPEL------GVADRIIMGLPKSAHEFLPLALELLKDG--------GIIHYYEFVP 292 (341)
T ss_pred HHHHHHhcCccceeeEEeccHHHhhhcc------ccCCEEEeCCCCcchhhHHHHHHHhhcC--------cEEEEEeccc
Confidence 9999999999999999999999998642 5799999999999999999999999985 6999999999
Q ss_pred CCCCchhHHHHHHHHHhhc---ccceEEEEeEEecCCCcEEEEEEEec
Q 007525 544 ARDPEFDFHERIRIALVEV---AVNVEMRRVRLVAPGKWMLCASFVLP 588 (600)
Q Consensus 544 ~~d~~~di~eRI~~~L~~~---~~~~~v~~VR~VAP~K~mycvsFrlp 588 (600)
+++.......++....... ......|.|++|||++||||+++++.
T Consensus 293 e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~vd~~v~ 340 (341)
T COG2520 293 EDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLRVL 340 (341)
T ss_pred hhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEEEEEec
Confidence 8876544566666544333 34578999999999999999999874
No 3
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=100.00 E-value=1.7e-45 Score=362.18 Aligned_cols=193 Identities=44% Similarity=0.707 Sum_probs=161.2
Q ss_pred eeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEeccEEEEEec
Q 007525 325 SAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCF 404 (600)
Q Consensus 325 ssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~ 404 (600)
+|||++|||||++++++..+|++.|+++|++++ |++++|++|.+.++|++|++++++|+|++.++|+++|+||+|.+|+
T Consensus 1 t~~~~iG~Iaiv~~~~~~~~~~~~I~~~i~~~~-~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~ 79 (200)
T PF02475_consen 1 TSFEIIGDIAIVNLPEELEPYKELIAEAILEKN-PNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDL 79 (200)
T ss_dssp -EEEEETTEEEEEB-CCCCHHHHHHHHHHHHHC--T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEEEET
T ss_pred CceEEEccEEEEeCCcccchHHHHHHHHHHHhc-cCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEEEcc
Confidence 589999999999999999999999999999998 8999999999888999999999999999989999999999999999
Q ss_pred CeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc
Q 007525 405 DTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482 (600)
Q Consensus 405 ~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g 482 (600)
+++||++|+++||+|+.+.+++|++|+|||||+|+|+|++|+ +++.|+|+|+||+|+++|++|+++|+++++|.++++
T Consensus 80 ~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~ 159 (200)
T PF02475_consen 80 SKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVING 159 (200)
T ss_dssp TTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES
T ss_pred ceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcC
Confidence 999999999999999999999999999999999999999999 678999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 483 DGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 483 Dare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|++++++ ...+|+|+||+|..+.+||+++..+++++
T Consensus 160 D~~~~~~-------~~~~drvim~lp~~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 160 DAREFLP-------EGKFDRVIMNLPESSLEFLDAALSLLKEG 195 (200)
T ss_dssp -GGG----------TT-EEEEEE--TSSGGGGHHHHHHHEEEE
T ss_pred CHHHhcC-------ccccCEEEECChHHHHHHHHHHHHHhcCC
Confidence 9999985 35799999999999999999999999875
No 4
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=99.93 E-value=4e-26 Score=233.52 Aligned_cols=252 Identities=17% Similarity=0.216 Sum_probs=199.6
Q ss_pred CCCeeEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCc-eEEEEccccc-ccccccceeEEEecCCceEEEEEeccEE
Q 007525 322 IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKI-QTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLS 399 (600)
Q Consensus 322 ~iPssfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~I-ktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~ 399 (600)
++|.+|+++|++++++.++-..+..+.|++.+.....+.. ...+.+...+ +..-|.+.++.|+|+.. ++.+++||++
T Consensus 89 ~LP~kw~~~g~lvl~~~~sF~~~~W~~~~~e~w~~va~sl~~~r~ar~~~vs~~~~R~~~v~~L~Gd~g-WV~~v~NGI~ 167 (351)
T KOG1227|consen 89 DLPLKWEIYGPLVLFPVNSFNHPIWQKIFQELWSVVAKSLGVSRLARNRLVSHLARRPPNVQPLYGDLG-WVKHVQNGIT 167 (351)
T ss_pred hccccceecCCEEEEeccccCChhHHHHHHHHHHhhhhccchhhhhhccccCccccCCCcccccccccc-ceeehhcCeE
Confidence 4899999999999999998888888999998887542111 1122233333 33458899999999975 7888999999
Q ss_pred EEEecCeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHH-HhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 400 LFRCFDTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIP-AAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 400 F~vD~~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIp-aAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
|.+|+.+.||+.+..+|+.|+.++...|++|+|||||+|||++| +.+.| +.|+|+|+||++++.|++|++.|++.++.
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~ 247 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRC 247 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999999999988999999999999999994 44556 49999999999999999999999998888
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCch---hHHHH
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEF---DFHER 554 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~---di~eR 554 (600)
.++.+|.+..- +....|||.+.+-.++.+-+..|..+|++. +| +++|+|+..+.++... +-.+.
T Consensus 248 ~i~~gd~R~~~-------~~~~AdrVnLGLlPSse~~W~~A~k~Lk~e--gg----silHIHenV~~s~~~~~~a~~v~k 314 (351)
T KOG1227|consen 248 RITEGDNRNPK-------PRLRADRVNLGLLPSSEQGWPTAIKALKPE--GG----SILHIHENVKDSDIKIVEADGVNK 314 (351)
T ss_pred HhhhccccccC-------ccccchheeeccccccccchHHHHHHhhhc--CC----cEEEEeccccccccccccccchhh
Confidence 88888887653 356799999998777888889999999986 33 4999999999876321 11111
Q ss_pred HHHHHhhcccceEEEEeEEecCCCcEEEEEEEe
Q 007525 555 IRIALVEVAVNVEMRRVRLVAPGKWMLCASFVL 587 (600)
Q Consensus 555 I~~~L~~~~~~~~v~~VR~VAP~K~mycvsFrl 587 (600)
....+...........+++++|.++|.|.+...
T Consensus 315 t~~~~~~k~~~~~tN~iks~~~r~s~~~~~s~v 347 (351)
T KOG1227|consen 315 TIKDIANKGVNSKTNRIKSFAPRISHVCVDSDV 347 (351)
T ss_pred HHHHHHhccCceeehhhccCCCccceeeeccee
Confidence 111221222345677899999999999987654
No 5
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.90 E-value=4.7e-22 Score=214.10 Aligned_cols=224 Identities=15% Similarity=0.144 Sum_probs=166.2
Q ss_pred CCC-eeEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEcccccccccc--cceeEEEecCC-ceEEEEEec
Q 007525 322 IIP-SAFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYR--TMQLEVLAGNN-SLVTMLLFH 396 (600)
Q Consensus 322 ~iP-ssfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R--~~~~evLaGe~-~~~t~vkEn 396 (600)
.+| --.|+||+++++|+.+.+ ..+++.|.++|.+.+ + .++|+.+.+....... .....+++|+. +..+.++||
T Consensus 111 glpGliVD~y~d~~vvq~~~~~~~~~~~~i~~aL~~~~-~-~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~~~~~v~E~ 188 (396)
T PRK15128 111 GLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLY-P-ECAIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEH 188 (396)
T ss_pred CCCcEEEEEECCEEEEEECcHHHHHhHHHHHHHHHHHc-C-CcEEEEcCcchhHHhcCCCccceEEecCCCCccEEEEEC
Confidence 355 369999999999999876 568999999999876 3 4688877553211111 23456889985 556779999
Q ss_pred cEEEEEecCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 397 HLSLFRCFDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 397 G~~F~vD~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNakl 470 (600)
|++|.+|+.. +|+++|.. +..+..+.+|.+|||+|||+|.|++.++..|+ +|+++|+|+.+++.+++|+++
T Consensus 189 g~~f~vdl~~g~ktG~flDqr~~---R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~ 265 (396)
T PRK15128 189 GMKLLVDIQGGHKTGYYLDQRDS---RLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL 265 (396)
T ss_pred CEEEEEecccccccCcChhhHHH---HHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 9999999985 89887643 33444456789999999999999999888765 999999999999999999999
Q ss_pred cCCC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH-------------HHHHHHHHHhcCCCCCCCCCccEE
Q 007525 471 NKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-------------EFLDAFRGIYRDRPEDAKFTFPKI 536 (600)
Q Consensus 471 Ngl~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-------------eFLdaa~~lLk~~~~~g~~~~p~I 536 (600)
|+++ ++++++++|+++++..+.. ...+||+||+|||+.+. +++..+.++++++ |++
T Consensus 266 Ngl~~~~v~~i~~D~~~~l~~~~~--~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g--------G~l 335 (396)
T PRK15128 266 NKLDLSKAEFVRDDVFKLLRTYRD--RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG--------GIL 335 (396)
T ss_pred cCCCCCcEEEEEccHHHHHHHHHh--cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC--------eEE
Confidence 9996 4699999999999866432 14579999999998531 2233556677765 577
Q ss_pred EEEeccCCCCCchhHHHHHHHHHhh
Q 007525 537 HLYGFSKARDPEFDFHERIRIALVE 561 (600)
Q Consensus 537 HvY~F~k~~d~~~di~eRI~~~L~~ 561 (600)
.++..+..-+ ..++.+-+.++...
T Consensus 336 v~~scs~~~~-~~~f~~~v~~aa~~ 359 (396)
T PRK15128 336 LTFSCSGLMT-SDLFQKIIADAAID 359 (396)
T ss_pred EEEeCCCcCC-HHHHHHHHHHHHHH
Confidence 7665444332 23555555554433
No 6
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=99.90 E-value=4.6e-25 Score=233.92 Aligned_cols=418 Identities=23% Similarity=0.215 Sum_probs=315.4
Q ss_pred CCCccccc---CcccccccCcccccceEEEeecccccccccCCCCCCCCCCCCcCCCCCCCCccchhc-----cccccc-
Q 007525 21 PLPSVIFS---PPIHSLFAKPKFIAPVTLSTFSTAAISAASGNHQSSLPYGPSLFKGKTPPTLKQQQD-----QQENET- 91 (600)
Q Consensus 21 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~- 91 (600)
++|+.++| +.+.--.|++ | .++|.|+.+.-.. +++|||++.+| .|+.-..++. +.|...
T Consensus 6 ~~~~~~~s~~~r~~~~~~p~~---k-~~~~~~~~~~~~t-------t~~l~al~~~~-e~vs~~ir~~~~~~~r~p~i~~ 73 (495)
T KOG2078|consen 6 SFPFPVISYSARFILKPYPPP---K-RIMCMFDRSLFKT-------TLPLGALKLPG-EPVSDDIRLAKIGILRDPRIPK 73 (495)
T ss_pred cCCCcchhhcceeeccCCCCc---c-eEEEEEehhhhhc-------ccccchhhcCC-cchHHHHHHhhhhhhccCCCCc
Confidence 88999888 3444334444 4 7889888776433 78999999999 5555444442 222111
Q ss_pred --ccccccccceeeeeeeeeeecccchHHHHHHhhccccCCccccccccccCCchhhHHHhhcCCCCCCC-CCCCCCCC-
Q 007525 92 --KAFIDETHFTRIFDIAALRVPAKDCYALESRLRGHLLNWPRVRNIARVLGDEIETQFVKLLGNNNDGS-HGGNEDFS- 167 (600)
Q Consensus 92 --~~~ld~~~f~~~~~~~a~rvp~~~~~~~~~~l~~~~l~~pr~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 167 (600)
+..=|...|+|.+-+.+.|||+++|.+.+.+|++++||||++++|.+.++++.+-.-++++....-.- .+.-++|.
T Consensus 74 iie~~kd~l~~tr~~~ls~~rv~~ddsf~~~~ll~~e~lN~~~~~~i~~~~~L~yE~w~~keilRavlpe~e~~~s~ft~ 153 (495)
T KOG2078|consen 74 IIEDPKDVLEFTRLVELSPSRVPADDSFPEEELLVLELLNWPELEIIPHELELTYEYWKAKEILRAVLPEEEDVPSSFTI 153 (495)
T ss_pred cccCCcccccceeEEEeecccccccccchHHHHHHhhhcCcccceeeccccccchhhhhHHHHHHhhCccccccccccee
Confidence 11112236999999999999999999999999999999999999999999988777776666664111 11111121
Q ss_pred CCCCCccchhhHHHHHhhhccccccchhhhhHHHhHHHHhhhhhhcccCCCC--CCCCcceeeehhhHHhhhhccccCcc
Q 007525 168 GVVGDEVNSVLFREELVKSFDARGFVKFRNLARISRLRRKKRKEKKEGKEGN--GRKGELYVVEVVEEERKEMSGLLGDE 245 (600)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (600)
-+++..++-+..+.++++.+|.-+|-|+ |++|+++++.+....+-+....+ .|++. +|+||=| ++.+|+.++|+-
T Consensus 154 ~GhIaHLNl~~e~lpfk~iI~~Vi~DK~-n~~ktvv~K~~~Itn~yR~~~~eviAGe~n-~vtevre-~~~~Fk~DfskV 230 (495)
T KOG2078|consen 154 TGHIAHLNLRDEQLPFKRIIGQVIYDKN-NLIKTVVNKIGRITNRYRNFKLEVIAGERN-LVTEVRE-GGERFKFDFSKV 230 (495)
T ss_pred eeeeEEeeccchhccHHHHHHHHhhccC-CCceEeeecccchhhhhcccCceEecCCCc-eEEEEec-CCeeEEEecceE
Confidence 2377889999999999999999999999 99999999998887766665554 44444 6677644 456788888887
Q ss_pred cCCCccccCceeEEecccccccccCCCChHHHHHHhhhhcccCCCCCeeEEEeeeeecccccChHHHHHhcCCCCCCCCe
Q 007525 246 FRGGEKWRGSTRLLLLDEELVDKNVEEFPEAIKVLLEQDTRENTTPTLELVKCRLTLFYDYWLMNEILEALLPKGMIIPS 325 (600)
Q Consensus 246 ~~~~~~~~~~~rllLl~~~~~~~~~~~~p~~~~~~l~e~~~~~~~~~~e~v~~~l~l~Y~~~~~~eiL~~~LP~~~~iPs 325 (600)
+ |+ .||...++++.. +-+.++.+.++.-...-..-....+ .|.+..+|.||.+-++|++.++-+...|+
T Consensus 231 Y-----Wn--sRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~ 299 (495)
T KOG2078|consen 231 Y-----WN--SRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPS 299 (495)
T ss_pred E-----ee--ccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchh
Confidence 6 87 799999998864 6667777777765543322222222 27899999999999999999999988999
Q ss_pred eEEEECcEEEEEeCCCCcccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEeccEEEEEecC
Q 007525 326 AFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFD 405 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~ 405 (600)
.++++|+.|+..++.+..+|+++|++..++++.+.+.|++++.+.+.+.+|+.+.++++|.-++.+..-|++.+|+.+++
T Consensus 300 ~iei~Nmda~~Flr~e~~~~~~~I~~~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la 379 (495)
T KOG2078|consen 300 AIEIFNMDAKDFLRQEPLPYKRLIADEVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLA 379 (495)
T ss_pred heeeecccHHHHhhcCCchhhhHHHHHHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999987778899999999999999999999999887777766778888887777
Q ss_pred e-eeecChh-----------------HHHH---HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHH
Q 007525 406 T-IYWNSKL-----------------ATER---QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYL 464 (600)
Q Consensus 406 k-fy~n~Rl-----------------~tEr---~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l 464 (600)
. .+|+++. .+|- +++. ..+++++|.| ++.++....+|.+++.++-+...+
T Consensus 380 ~k~~~d~~~lplvhcy~F~k~~~~~~s~e~~V~ar~~-------~~~kv~~e~~--~~~~~h~VR~VapnK~M~ca~~~l 450 (495)
T KOG2078|consen 380 RKGPIDKTPLPLVHCYCFSKLFCDVSSTEDLVTARIV-------AALKVFAEDG--ALVSLHLVRKVAPNKEMYCASFQL 450 (495)
T ss_pred ccCccccccceeEEEEEEeecccCCCchHHHHHHHHH-------hhcceeeccc--cceeeeeeeccCCCcccchhhhhc
Confidence 5 3332221 1121 2222 3567888888 444455567899999999999999
Q ss_pred HHHHHHcCC
Q 007525 465 ERNSVLNKL 473 (600)
Q Consensus 465 ~eNaklNgl 473 (600)
-.|...|++
T Consensus 451 p~~~l~~~~ 459 (495)
T KOG2078|consen 451 PANVLVNEL 459 (495)
T ss_pred HHHHhhhhh
Confidence 988887765
No 7
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.90 E-value=5.5e-22 Score=212.73 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=159.5
Q ss_pred CCC-eeEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccccc-cccccc-ceeEEEecC-CceEEEEEec
Q 007525 322 IIP-SAFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRT-MQLEVLAGN-NSLVTMLLFH 396 (600)
Q Consensus 322 ~iP-ssfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~-~~~evLaGe-~~~~t~vkEn 396 (600)
..| --.|+||+++++|+.+.. ...++.|.+++.+.. +.+++|+.+.+.. .+..|. ....+++|+ ....+.+.|+
T Consensus 107 gl~Gl~vD~ygd~~vvq~~s~~~~~~~~~i~~~l~~~~-~~~~~v~e~s~~~~r~~~~~~~~~~~~~g~~~~~~~~i~E~ 185 (393)
T COG1092 107 GLPGLTVDRYGDYLVVQLYSAGIEIFKEAILEALAEAF-PAPKGVYEKSDVRLRRREGLKGRSQYLKGEEAPEEVVIEEN 185 (393)
T ss_pred CCCCeEEEecCCEEEEEecccccccchHHHHHHHHHhh-cccceeEeccchhhhhhhcccccccccccccCCCcEEEEeC
Confidence 355 569999999999998876 677789999999987 6789999886322 122222 234567784 6667889999
Q ss_pred cEEEEEecC-----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 397 HLSLFRCFD-----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 397 G~~F~vD~~-----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNakl 470 (600)
|.+|.+|+. .||.++|... .++.+..+ |++|||+||++|.||+.||..|+ +|++||++..+++++++|+++
T Consensus 186 g~kf~v~~~~g~kTGfFlDqR~~R--~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 186 GVKFLVDLVDGLKTGFFLDQRDNR--RALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred CeEEEEecCCcccceeeHHhHHHH--HHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh
Confidence 999999988 4899887552 33444455 99999999999999999999997 999999999999999999999
Q ss_pred cCCC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH-------------HHHHHHHHHhcCC
Q 007525 471 NKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-------------EFLDAFRGIYRDR 525 (600)
Q Consensus 471 Ngl~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-------------eFLdaa~~lLk~~ 525 (600)
|+++ +++.++++|++++++.... .+.+||+||+|||.++. ..+..+.++++++
T Consensus 263 Ng~~~~~~~~i~~Dvf~~l~~~~~--~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 263 NGLDGDRHRFIVGDVFKWLRKAER--RGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred cCCCccceeeehhhHHHHHHHHHh--cCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 9995 5689999999999987654 35689999999998642 3466777788775
No 8
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.87 E-value=2.2e-20 Score=193.42 Aligned_cols=191 Identities=15% Similarity=0.211 Sum_probs=138.8
Q ss_pred eEEEECcEEEEEeCCCC-cccHHHHHHHHHhhcCCCceEEEEccc--cc--cccc-ccceeEEEecCCceEEEEEeccEE
Q 007525 326 AFETVGHIAHLNLREEH-QPFKYLIAKVVLDKNKPKIQTVVNKID--AI--HNDY-RTMQLEVLAGNNSLVTMLLFHHLS 399 (600)
Q Consensus 326 sfd~iG~Ia~lnL~~e~-~pyk~lI~evLldk~~P~IktVv~K~~--~I--~ge~-R~~~~evLaGe~~~~t~vkEnG~~ 399 (600)
-+|+||++++||+..+. ..++..|.++|.... + ..++.+.. .+ ...+ .....++++|+.+...++.|+|++
T Consensus 18 ~VD~y~~~lvvq~~~~~~~~~~~~l~~~L~~l~-~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~G~~~~~~~v~E~gl~ 94 (286)
T PF10672_consen 18 TVDRYGDVLVVQLYSEGMERFLDELREALEALI-P--PGIYEKKQGRSIVLRKREKEGAPSEVLYGEPPEFFTVEENGLK 94 (286)
T ss_dssp EEEEETTEEEEEE-SHHHHCTHHHHHHHHHHHH-C--CCECEEEEGGGCCCCHHTTTT-EEEEEESS-SSEEEEEETTEE
T ss_pred EEEEECCEEEEEECCcChHHHHHHHHHHHHHHh-h--cceeeeccccceeehhhhccCCCceEEecCCCCceEEEECCEE
Confidence 58999999999998765 578888988888765 2 12332211 11 1111 234577899998877889999999
Q ss_pred EEEecC-----eeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCC
Q 007525 400 LFRCFD-----TIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKL 473 (600)
Q Consensus 400 F~vD~~-----kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl 473 (600)
|.+|+. .+|+++|.. ++.+.....|.+|||+||++|.|++.||+.|+ +|++||++..+++++++|+++|++
T Consensus 95 f~v~l~~gqktGlFlDqR~n---R~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~ 171 (286)
T PF10672_consen 95 FRVDLTDGQKTGLFLDQREN---RKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGL 171 (286)
T ss_dssp EEEESSSSSSTSS-GGGHHH---HHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEEEcCCCCcceEcHHHHhh---HHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 999996 389998744 34444456799999999999999999999886 899999999999999999999998
Q ss_pred C-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH----------HHHHHHHHHhcCC
Q 007525 474 E-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT----------EFLDAFRGIYRDR 525 (600)
Q Consensus 474 ~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~----------eFLdaa~~lLk~~ 525 (600)
+ ++++++++|+++++..+.+ .++||+||+|||.++. +.+..+..+++++
T Consensus 172 ~~~~~~~~~~Dvf~~l~~~~~---~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 172 DLDRHRFIQGDVFKFLKRLKK---GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp CCTCEEEEES-HHHHHHHHHH---TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred CccceEEEecCHHHHHHHHhc---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 6 5799999999999876532 4689999999998631 3455566666664
No 9
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=8.7e-19 Score=190.66 Aligned_cols=212 Identities=20% Similarity=0.259 Sum_probs=159.8
Q ss_pred cccHHHHHHHHHhhcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HH
Q 007525 343 QPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QR 419 (600)
Q Consensus 343 ~pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~R 419 (600)
.+......+.+++.+ |.+.+++...+.. .+...+.+..+++|.. .++| |..|.+.+..|||.|..++|+ ..
T Consensus 211 ~~~~~~~~~~~~~~~-~~~~~i~~~i~~~~~~~i~g~~~~~~~~~~----~i~e-~~~~~~~~~sF~Q~N~~~~ekl~~~ 284 (432)
T COG2265 211 LPELEQALRELLEAF-PEIKGIVQNINRAKTNVIEGDEEITLYGLE----SIRE-GVSFQISPRSFFQVNPAVAEKLYET 284 (432)
T ss_pred chhHHHHHHHHHHhh-hhcceEEEEecCCCCceEEcceeEEEeccc----cccc-ceEEEeCCCCceecCHHHHHHHHHH
Confidence 566778888888887 8888888766543 3444556666777764 2333 999999999999999999998 45
Q ss_pred HHhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 420 LLSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 420 iv~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
+.+.+ .++++|+|+|||+|.|++++|++..+|+|+|++++|++.|++||+.|++.| +++..+|+++++.... ..
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~---~~ 360 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWW---EG 360 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhcc---cc
Confidence 55553 477899999999999999999999999999999999999999999999998 9999999999987542 13
Q ss_pred CcccEEEeCCCcchH--HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEec
Q 007525 498 HKITQVVMNLPNDAT--EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVA 575 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~--eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VA 575 (600)
..+|.||.|||+.+. ++++.+.+.-.. .+|++=|.... +..-+. .|.+ .+..+.+|.-+.
T Consensus 361 ~~~d~VvvDPPR~G~~~~~lk~l~~~~p~---------~IvYVSCNP~T------laRDl~-~L~~--~gy~i~~v~~~D 422 (432)
T COG2265 361 YKPDVVVVDPPRAGADREVLKQLAKLKPK---------RIVYVSCNPAT------LARDLA-ILAS--TGYEIERVQPFD 422 (432)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhcCCC---------cEEEEeCCHHH------HHHHHH-HHHh--CCeEEEEEEEec
Confidence 579999999999753 677776654322 36888776432 111111 2222 234477777766
Q ss_pred --CCCcEEE
Q 007525 576 --PGKWMLC 582 (600)
Q Consensus 576 --P~K~myc 582 (600)
|+..|+.
T Consensus 423 mFP~T~HvE 431 (432)
T COG2265 423 MFPHTHHVE 431 (432)
T ss_pred cCCCccccC
Confidence 8877764
No 10
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.82 E-value=7e-19 Score=201.70 Aligned_cols=192 Identities=13% Similarity=0.151 Sum_probs=146.2
Q ss_pred CC---eeEEEECcEEEEEeCCCC--------cccHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEE
Q 007525 323 IP---SAFETVGHIAHLNLREEH--------QPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVT 391 (600)
Q Consensus 323 iP---ssfd~iG~Ia~lnL~~e~--------~pyk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t 391 (600)
+| --+|+||++++||+.... ..++..|.++|.+......++|+.|..... . -....+.+ |+.+..+
T Consensus 425 lp~~gl~vD~y~~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~i~~k~~~~~-~-g~~~~~~~-g~~~~~~ 501 (702)
T PRK11783 425 LPEYNVAVDRYGDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPNKVVLKTRERQ-K-GKNQYQKL-AEKGEFL 501 (702)
T ss_pred CCccCeEEEEECCEEEEEECCCccccCHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeehhc-c-Ccchhhhc-cCCCceE
Confidence 66 589999999999998764 356788888887762113478988733211 1 11111222 6656667
Q ss_pred EEEeccEEEEEecCe-----eeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHH
Q 007525 392 MLLFHHLSLFRCFDT-----IYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLE 465 (600)
Q Consensus 392 ~vkEnG~~F~vD~~k-----fy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~ 465 (600)
.+.|||++|.+|+.. +|+++|.. ++.+..+.+|.+|||+|||+|.|++.+|+.|+ +|+++|+|+.|++.++
T Consensus 502 ~v~e~g~~f~v~~~~~~~tG~flDqr~~---R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~ 578 (702)
T PRK11783 502 EVTEYGAKLLVNLTDYLDTGLFLDHRPT---RRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAE 578 (702)
T ss_pred EEEECCEEEEEEcCCCCcceECHHHHHH---HHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 799999999999774 88887643 33344445689999999999999999999876 7999999999999999
Q ss_pred HHHHHcCCC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------------HHHHHHHHHHhcCC
Q 007525 466 RNSVLNKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 466 eNaklNgl~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------------~eFLdaa~~lLk~~ 525 (600)
+|+++|+++ ++++++++|+.+++..+ ..+||+||+|||+.+ .+.+..+.++++++
T Consensus 579 ~N~~~ng~~~~~v~~i~~D~~~~l~~~-----~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 579 RNFALNGLSGRQHRLIQADCLAWLKEA-----REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred HHHHHhCCCccceEEEEccHHHHHHHc-----CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 999999997 57999999999988642 357999999999743 13566677777775
No 11
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.82 E-value=4.2e-18 Score=184.51 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=143.1
Q ss_pred ECcEEEEE-eCCCCcccHHHHHHHHHhhcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEeccEEEEEecCee
Q 007525 330 VGHIAHLN-LREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTI 407 (600)
Q Consensus 330 iG~Ia~ln-L~~e~~pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kf 407 (600)
.|+++++- ......+....|++.+.+.+ |.+++|+...+.. .+.+.+.+.++++|+..+...+ +|.+|.+++..|
T Consensus 193 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~v~~v~~~~~~~~~~~~~g~~~~~l~G~~~~~~~~--~~~~~~~~~~~F 269 (431)
T TIGR00479 193 TGELLLVLRTALEGFPHKEELALELQERY-PDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKS--GDLSFSLSARDF 269 (431)
T ss_pred CCCEEEEEEECCCccccHHHHHHHHHHhC-CCceEEEEEeCCCCCCeeeCCceEEEeCCCeEEEEE--CCEEEEECCCce
Confidence 35555433 33334567778888888877 8999998754432 2334455678899987655444 899999999999
Q ss_pred eecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 007525 408 YWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483 (600)
Q Consensus 408 y~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD 483 (600)
||.|+.+++. .++.+. +.++++|||+|||+|.+++++|+.+.+|+|+|+|+.|++.+++|++.|++.| ++++++|
T Consensus 270 ~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d 348 (431)
T TIGR00479 270 FQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGT 348 (431)
T ss_pred eecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCC
Confidence 9999988876 344444 4567899999999999999999988899999999999999999999999975 9999999
Q ss_pred hHHHHHHHHHhhcCCcccEEEeCCCcch--HHHHHHHHH
Q 007525 484 GRRFIDAMFASQKAHKITQVVMNLPNDA--TEFLDAFRG 520 (600)
Q Consensus 484 are~l~~l~~~~~~~~fD~VVmNpP~~a--~eFLdaa~~ 520 (600)
+.+++..+.. ....||.|++|||+.. .++++.+..
T Consensus 349 ~~~~l~~~~~--~~~~~D~vi~dPPr~G~~~~~l~~l~~ 385 (431)
T TIGR00479 349 LETVLPKQPW--AGQIPDVLLLDPPRKGCAAEVLRTIIE 385 (431)
T ss_pred HHHHHHHHHh--cCCCCCEEEECcCCCCCCHHHHHHHHh
Confidence 9987654321 1346999999999864 567766543
No 12
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.77 E-value=2.6e-16 Score=164.47 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=123.0
Q ss_pred ccHHHHHHHHHhhcCCCceEEEEcccc-cccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHH
Q 007525 344 PFKYLIAKVVLDKNKPKIQTVVNKIDA-IHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRL 420 (600)
Q Consensus 344 pyk~lI~evLldk~~P~IktVv~K~~~-I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Ri 420 (600)
+....+.+.+.... +.+.+|....+. ..+...+.+..+++|.+.+...+ +|+.|.+.+..|||.|..++|+ ..+
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~l~g~~~~~~~~--~~~~~~~~~~sF~Q~n~~~~~~l~~~v 165 (315)
T PRK03522 89 ARLRRALPWLQAQL-PQLKVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NGVPLFIRPQSFFQTNPAVAAQLYATA 165 (315)
T ss_pred hhHHHHHHHHHHHC-CCCEEEEEEECCCCCCcccCCceEEEeCCCeEEEEE--CCEEEEECCCeeeecCHHHHHHHHHHH
Confidence 44444555566666 788888544332 22233344556788987665556 7999999999999999988887 233
Q ss_pred HhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 421 LSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 421 v~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+.+ .++.+|||+|||+|.|++++|+.+++|+|+|+|+.|++.+++|++.|++.+ ++++++|+.++... ...
T Consensus 166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~-----~~~ 239 (315)
T PRK03522 166 RDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATA-----QGE 239 (315)
T ss_pred HHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHh-----cCC
Confidence 3332 257899999999999999999999999999999999999999999999964 99999999987642 134
Q ss_pred cccEEEeCCCcch
Q 007525 499 KITQVVMNLPNDA 511 (600)
Q Consensus 499 ~fD~VVmNpP~~a 511 (600)
.||.|++|||+..
T Consensus 240 ~~D~Vv~dPPr~G 252 (315)
T PRK03522 240 VPDLVLVNPPRRG 252 (315)
T ss_pred CCeEEEECCCCCC
Confidence 6999999999874
No 13
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.76 E-value=7.9e-17 Score=172.35 Aligned_cols=212 Identities=12% Similarity=0.127 Sum_probs=147.5
Q ss_pred ccHHHHHHHHHhhcCCCceEEEEccccc-ccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHHH--HH
Q 007525 344 PFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQ--RL 420 (600)
Q Consensus 344 pyk~lI~evLldk~~P~IktVv~K~~~I-~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~--Ri 420 (600)
+..+.+.+.+.+.. +.+.+|+...+.. .+...+.+..+++|++.....+ +|+.|.+++..|||.|..++|.. .+
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~l~G~~~i~e~~--~g~~~~~~~~~F~Q~n~~~~~~l~~~~ 225 (374)
T TIGR02085 149 AQIRRALPWLIEQL-PQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NDVPLVIRPQSFFQTNPKVAAQLYATA 225 (374)
T ss_pred hhHHHHHHHHHHHC-CCcEEEEEEECCCCCCceECceEEEEcCCCeeEEEE--CCEEEEECCCccccCCHHHHHHHHHHH
Confidence 44455556566665 7888886443321 2233344556788987655555 79999999999999999998882 23
Q ss_pred HhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 421 LSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 421 v~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.+.+ .++.+|+|+|||+|.|++++|..+.+|+|+|+|+.|++.+++|++.|++++ ++++++|+.+++... ..
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~~~~-----~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQ-----MS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHHhc-----CC
Confidence 3332 356899999999999999999988999999999999999999999999974 999999999887431 23
Q ss_pred cccEEEeCCCcch--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE--Ee
Q 007525 499 KITQVVMNLPNDA--TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR--LV 574 (600)
Q Consensus 499 ~fD~VVmNpP~~a--~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR--~V 574 (600)
.||.|++|||+.. .++++.+.. ++++ ..|++=|-.. . + .+-+... .++.++.|. |.
T Consensus 300 ~~D~vi~DPPr~G~~~~~l~~l~~-~~p~--------~ivyvsc~p~--T----l----aRDl~~L-~gy~l~~~~~~Dm 359 (374)
T TIGR02085 300 APELVLVNPPRRGIGKELCDYLSQ-MAPK--------FILYSSCNAQ--T----M----AKDIAEL-SGYQIERVQLFDM 359 (374)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHh-cCCC--------eEEEEEeCHH--H----H----HHHHHHh-cCceEEEEEEecc
Confidence 5999999999963 355555543 3332 3666666321 1 1 1112222 346666666 44
Q ss_pred cCCCcEEEEE
Q 007525 575 APGKWMLCAS 584 (600)
Q Consensus 575 AP~K~mycvs 584 (600)
=|...|+=.-
T Consensus 360 FPqT~HvE~v 369 (374)
T TIGR02085 360 FPHTSHYEVL 369 (374)
T ss_pred CCCCCcEEEE
Confidence 4777766443
No 14
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.75 E-value=4.9e-16 Score=165.70 Aligned_cols=210 Identities=13% Similarity=0.189 Sum_probs=142.4
Q ss_pred cHHHHHHHHHhhcCCCceEEEEcccccccccccceeEEEecCCceEEEEEecc--EEEEEecCeeeecChhHHHH--HHH
Q 007525 345 FKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNNSLVTMLLFHH--LSLFRCFDTIYWNSKLATER--QRL 420 (600)
Q Consensus 345 yk~lI~evLldk~~P~IktVv~K~~~I~ge~R~~~~evLaGe~~~~t~vkEnG--~~F~vD~~kfy~n~Rl~tEr--~Ri 420 (600)
....+++.+.++. |.+ +|.++ .....+++|.+.+...+.-+| +.|++.+..|||.|+.++|. ..+
T Consensus 131 ~~~~~~~~l~~~~-~~~-~i~~~---------~~~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v 199 (362)
T PRK05031 131 EWEQAAKALRDAL-FNV-HLIGR---------SRKQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWA 199 (362)
T ss_pred HHHHHHHHHHHHC-CCc-EEEec---------CCCcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHH
Confidence 3455666677666 666 55222 112366789876544442245 89999999999999999988 344
Q ss_pred HhcCC-CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc---
Q 007525 421 LSGFN-FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK--- 496 (600)
Q Consensus 421 v~~l~-~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~--- 496 (600)
.+.+. .+..|||+|||+|.|++++|+...+|+|+|+++.|++.+++|++.|++++ ++++++|+.++++.+.....
T Consensus 200 ~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 200 LDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred HHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcccccc
Confidence 55443 23579999999999999999887899999999999999999999999985 99999999998865432100
Q ss_pred -------CCcccEEEeCCCcch--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceE
Q 007525 497 -------AHKITQVVMNLPNDA--TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVE 567 (600)
Q Consensus 497 -------~~~fD~VVmNpP~~a--~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~ 567 (600)
..+||.|++|||+.. .+.+..+.. +. .+|+|=|... .+..-+. .| ..++.
T Consensus 279 ~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~--------~ivyvSC~p~------tlarDl~-~L---~~gY~ 337 (362)
T PRK05031 279 LKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YE--------RILYISCNPE------TLCENLE-TL---SQTHK 337 (362)
T ss_pred cccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cC--------CEEEEEeCHH------HHHHHHH-HH---cCCcE
Confidence 125899999999964 234444332 21 3677766431 1111122 22 12466
Q ss_pred EEEeE--EecCCCcEEEEEEEe
Q 007525 568 MRRVR--LVAPGKWMLCASFVL 587 (600)
Q Consensus 568 v~~VR--~VAP~K~mycvsFrl 587 (600)
+..|. |.=|...|+=....|
T Consensus 338 l~~v~~~DmFPqT~HvE~v~lL 359 (362)
T PRK05031 338 VERFALFDQFPYTHHMECGVLL 359 (362)
T ss_pred EEEEEEcccCCCCCcEEEEEEE
Confidence 66666 444777776554433
No 15
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.68 E-value=6.1e-16 Score=164.47 Aligned_cols=172 Identities=18% Similarity=0.285 Sum_probs=107.5
Q ss_pred EEeccEEEEEecCeeeecChhHHHH--HHHHhcCCC-CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFNF-KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~~-ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNak 469 (600)
+.+.++.|++.+..|||.|..++|. ..+++.+.. +..|+|+|||+|.||+++|+++.+|+|+|+++.|++.|++|++
T Consensus 160 ~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 160 IQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHH
T ss_pred eeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHH
Confidence 3456899999999999999999998 455555442 3379999999999999999999999999999999999999999
Q ss_pred HcCCCCcEEEEEcChHHHHHHHHHh----------hcCCcccEEEeCCCcchH--HHHHHHHHHhcCCCCCCCCCccEEE
Q 007525 470 LNKLEKKIEVFNMDGRRFIDAMFAS----------QKAHKITQVVMNLPNDAT--EFLDAFRGIYRDRPEDAKFTFPKIH 537 (600)
Q Consensus 470 lNgl~nrV~~i~gDare~l~~l~~~----------~~~~~fD~VVmNpP~~a~--eFLdaa~~lLk~~~~~g~~~~p~IH 537 (600)
.|+++| ++++++++.++...+... .....+|.||+|||+.+. .+++.+.+ + . -+|+
T Consensus 240 ~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~-~--~--------~ivY 307 (352)
T PF05958_consen 240 LNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK-L--K--------RIVY 307 (352)
T ss_dssp HTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH-S--S--------EEEE
T ss_pred HcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc-C--C--------eEEE
Confidence 999997 999999998775432100 012368999999999753 45554432 2 1 2566
Q ss_pred EEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE--EecCCCcEEEEEEE
Q 007525 538 LYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR--LVAPGKWMLCASFV 586 (600)
Q Consensus 538 vY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR--~VAP~K~mycvsFr 586 (600)
+=|.... +..-+. .|. +++.+..|. |.-|...|+=.-+-
T Consensus 308 vSCnP~t------laRDl~-~L~---~~y~~~~v~~~DmFP~T~HvE~v~l 348 (352)
T PF05958_consen 308 VSCNPAT------LARDLK-ILK---EGYKLEKVQPVDMFPQTHHVETVAL 348 (352)
T ss_dssp EES-HHH------HHHHHH-HHH---CCEEEEEEEEE-SSTTSS--EEEEE
T ss_pred EECCHHH------HHHHHH-HHh---hcCEEEEEEEeecCCCCCcEEEEEE
Confidence 6664321 111111 232 245555555 55588888755443
No 16
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.65 E-value=1.3e-14 Score=154.45 Aligned_cols=185 Identities=11% Similarity=0.161 Sum_probs=128.4
Q ss_pred eeEEEecCCceEEEEEecc--EEEEEecCeeeecChhHHHH--HHHHhcCC-CCCeEEEEeeechHHHHHHhhCCCEEEE
Q 007525 379 QLEVLAGNNSLVTMLLFHH--LSLFRCFDTIYWNSKLATER--QRLLSGFN-FKDVVCDVFAGVGPICIPAAKIVKRVYA 453 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG--~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~-~ge~VLDlfAGvG~FaIpaAkkg~~V~A 453 (600)
...+++|.+.....+.-+| +.|.+++..|||.|..++|. ..+.+.+. .+..|||+|||+|.|++++|+.+.+|+|
T Consensus 145 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~ 224 (353)
T TIGR02143 145 KKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLA 224 (353)
T ss_pred CcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEE
Confidence 3466788865443332145 89999999999999988887 34555543 2457999999999999999998889999
Q ss_pred EeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh-h----c-----CCcccEEEeCCCcch--HHHHHHHHHH
Q 007525 454 NDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS-Q----K-----AHKITQVVMNLPNDA--TEFLDAFRGI 521 (600)
Q Consensus 454 vDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~-~----~-----~~~fD~VVmNpP~~a--~eFLdaa~~l 521 (600)
+|+++.|++.+++|++.|++++ ++++++|+.+++...... . . ...+|.|++|||+.. .+.++.+.+
T Consensus 225 vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~- 302 (353)
T TIGR02143 225 TEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA- 302 (353)
T ss_pred EECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc-
Confidence 9999999999999999999986 999999999987642110 0 0 123799999999864 344454433
Q ss_pred hcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeE--EecCCCcEEEEEE
Q 007525 522 YRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVR--LVAPGKWMLCASF 585 (600)
Q Consensus 522 Lk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR--~VAP~K~mycvsF 585 (600)
+. .+|+|=|-... ..+-+......+.+..|. |.=|...|+=.-.
T Consensus 303 --~~--------~ivYvsC~p~t----------laRDl~~L~~~Y~l~~v~~~DmFP~T~HvE~v~ 348 (353)
T TIGR02143 303 --YE--------RILYISCNPET----------LKANLEQLSETHRVERFALFDQFPYTHHMECGV 348 (353)
T ss_pred --CC--------cEEEEEcCHHH----------HHHHHHHHhcCcEEEEEEEcccCCCCCcEEEEE
Confidence 22 36777664321 111222222236666666 4457777765443
No 17
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.6e-15 Score=163.75 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=113.6
Q ss_pred cceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH-HHHHh-c--CCCCCeEEEEeeechHHHHHHhhCCCEEE
Q 007525 377 TMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER-QRLLS-G--FNFKDVVCDVFAGVGPICIPAAKIVKRVY 452 (600)
Q Consensus 377 ~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr-~Riv~-~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~ 452 (600)
+..+.+++|+..+.+.+ .|++|+|++..|||+|..++|. ...+. . +..+..++|+|||+|.|++.+|++..+|+
T Consensus 332 ~~~~~l~~~~~~I~E~l--~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~Vi 409 (534)
T KOG2187|consen 332 GKPLQLVGGDPYITESL--LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVI 409 (534)
T ss_pred CCCeEEEccccEEEeec--CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccccee
Confidence 46899999988777777 9999999999999999999998 44443 2 67889999999999999999999999999
Q ss_pred EEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc-EEEeCCCcchH
Q 007525 453 ANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT-QVVMNLPNDAT 512 (600)
Q Consensus 453 AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD-~VVmNpP~~a~ 512 (600)
++|++|+|+++|++||+.||++| .++++|-+.+.+..++.. ....-+ ++|+|||+.+.
T Consensus 410 GvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~-~~~~~~~v~iiDPpR~Gl 468 (534)
T KOG2187|consen 410 GVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTP-CCDSETLVAIIDPPRKGL 468 (534)
T ss_pred eeecChhhcchhhhcchhcCccc-eeeeecchhhccchhccc-CCCCCceEEEECCCcccc
Confidence 99999999999999999999997 999999998888776532 112345 78999999764
No 18
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.63 E-value=1.7e-14 Score=157.45 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=121.6
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN 471 (600)
+|+.|++.+..|||.|+.++|. ..+++. ..++++|||+|||+|.+++.+|+.+.+|+|+|+|+.|++.+++|++.|
T Consensus 263 ~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~ 342 (443)
T PRK13168 263 FGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRN 342 (443)
T ss_pred CCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 7999999999999999998887 445554 457889999999999999999999899999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchh
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFD 550 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~d 550 (600)
++++ ++++++|+.+.+....- ....||.|++|||+... +.+..+.+ +++. .+|++=|.... ...|
T Consensus 343 ~~~~-v~~~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~--------~ivyvSCnp~t--laRD 408 (443)
T PRK13168 343 GLDN-VTFYHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPK--------RIVYVSCNPAT--LARD 408 (443)
T ss_pred CCCc-eEEEEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCC--------eEEEEEeChHH--hhcc
Confidence 9986 99999999887643110 13569999999999743 44443333 2222 35555553221 1112
Q ss_pred HHHHHHHHHhhcccceEEEEeE--EecCCCcEEEEEEE
Q 007525 551 FHERIRIALVEVAVNVEMRRVR--LVAPGKWMLCASFV 586 (600)
Q Consensus 551 i~eRI~~~L~~~~~~~~v~~VR--~VAP~K~mycvsFr 586 (600)
+ . .|.+ .++.+..|+ |.-|...|+=.-..
T Consensus 409 l----~-~L~~--~gY~l~~i~~~DmFP~T~HvE~v~l 439 (443)
T PRK13168 409 A----G-VLVE--AGYRLKRAGMLDMFPHTGHVESMAL 439 (443)
T ss_pred H----H-HHhh--CCcEEEEEEEeccCCCCCcEEEEEE
Confidence 1 1 2211 235556555 45577777754443
No 19
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.59 E-value=1.3e-14 Score=156.18 Aligned_cols=119 Identities=25% Similarity=0.365 Sum_probs=98.1
Q ss_pred eeeecChhHHHHH---HHHhcCC---CCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcE
Q 007525 406 TIYWNSKLATERQ---RLLSGFN---FKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKI 477 (600)
Q Consensus 406 kfy~n~Rl~tEr~---Riv~~l~---~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV 477 (600)
.+||++....+|. .+++.+. ++.+|||+|||+|.+++.+|+. + .+|+++|+||.|++.+++|+++|++++ +
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~ 109 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-E 109 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-e
Confidence 5788887777774 4444443 3468999999999999999875 3 399999999999999999999999986 8
Q ss_pred EEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 007525 478 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLY 539 (600)
Q Consensus 478 ~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY 539 (600)
+++++|+.+++.. ...||+|++|||....+|++.+...++++ ++||+.
T Consensus 110 ~v~~~Da~~~l~~------~~~fD~V~lDP~Gs~~~~l~~al~~~~~~--------gilyvS 157 (382)
T PRK04338 110 KVFNKDANALLHE------ERKFDVVDIDPFGSPAPFLDSAIRSVKRG--------GLLCVT 157 (382)
T ss_pred EEEhhhHHHHHhh------cCCCCEEEECCCCCcHHHHHHHHHHhcCC--------CEEEEE
Confidence 8999999988742 24699999999977789999988888765 477776
No 20
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.58 E-value=1.5e-14 Score=155.20 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=109.7
Q ss_pred EeccEEEEEe-cCeeeecChhHHHHHHHH---h---cCCCC---CeEEEEeeechHHHHHHhhC--C-CEEEEEeCcHHH
Q 007525 394 LFHHLSLFRC-FDTIYWNSKLATERQRLL---S---GFNFK---DVVCDVFAGVGPICIPAAKI--V-KRVYANDLNPYA 460 (600)
Q Consensus 394 kEnG~~F~vD-~~kfy~n~Rl~tEr~Riv---~---~l~~g---e~VLDlfAGvG~FaIpaAkk--g-~~V~AvDiNP~A 460 (600)
+|+..+|.+. -..+|+|++....|...+ + ...++ -+|||+|||+|.+||.+++. | .+|++||+||.|
T Consensus 2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A 81 (374)
T TIGR00308 2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA 81 (374)
T ss_pred ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 5677777763 246899999888884322 1 12333 38999999999999999997 5 499999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 461 VDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 461 ve~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
++.+++|+++|++++ ++++++|+..++... ..+||+|.+||+.+...|++.+...++++ +++++.+
T Consensus 82 v~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~-----~~~fDvIdlDPfGs~~~fld~al~~~~~~--------glL~vTa 147 (374)
T TIGR00308 82 VESIKNNVEYNSVEN-IEVPNEDAANVLRYR-----NRKFHVIDIDPFGTPAPFVDSAIQASAER--------GLLLVTA 147 (374)
T ss_pred HHHHHHHHHHhCCCc-EEEEchhHHHHHHHh-----CCCCCEEEeCCCCCcHHHHHHHHHhcccC--------CEEEEEe
Confidence 999999999999985 999999999998642 35799999999877679999999999865 5888886
Q ss_pred cc
Q 007525 541 FS 542 (600)
Q Consensus 541 F~ 542 (600)
-.
T Consensus 148 TD 149 (374)
T TIGR00308 148 TD 149 (374)
T ss_pred cc
Confidence 43
No 21
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.50 E-value=7.8e-14 Score=123.04 Aligned_cols=95 Identities=28% Similarity=0.382 Sum_probs=82.1
Q ss_pred CCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
|.+|+|+|||+|.+++.+++.+ .+|+++|+||.+++.++.|+..+++.++++++++|+.+....+ ...+||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----PDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----TTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----cCceeEEEEE
Confidence 5789999999999999999998 8999999999999999999999999878999999999887332 2578999999
Q ss_pred CCCcch------------HHHHHHHHHHhcCC
Q 007525 506 NLPNDA------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP~~a------------~eFLdaa~~lLk~~ 525 (600)
|||+.. ..|++.+.++++++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 999862 47899999999986
No 22
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=3.5e-12 Score=126.11 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=82.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.+++.++.++ .+|+++|+++++++.+++|++.|++++ ++++++|+.+++.. ....||+|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l~~-----~~~~fDlV 125 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFLAQ-----PGTPHNVV 125 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHHhh-----cCCCceEE
Confidence 467899999999999999766554 699999999999999999999999875 99999999887642 13469999
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++|||+.. .+...+...+....+- .+-++|+|-+..+
T Consensus 126 ~~DPPy~~-g~~~~~l~~l~~~~~l--~~~~iv~ve~~~~ 162 (199)
T PRK10909 126 FVDPPFRK-GLLEETINLLEDNGWL--ADEALIYVESEVE 162 (199)
T ss_pred EECCCCCC-ChHHHHHHHHHHCCCc--CCCcEEEEEecCC
Confidence 99999632 3445555555443110 1124666655544
No 23
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.42 E-value=2e-12 Score=133.90 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=84.8
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHh-cC--CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLS-GF--NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~-~l--~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNa 468 (600)
.|..|.+++..++ +|-.+|- ...+. .+ .++.+|||+|||+|.+++.+|+. +.+|+|+|+|+.+++.+++|+
T Consensus 88 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 88 AGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred cCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 6889999986544 4544444 22332 23 34578999999999999999986 469999999999999999999
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+.|++.++++++++|+.+.+. ..+||.|++|||+.
T Consensus 166 ~~~~~~~~i~~~~~D~~~~~~-------~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFAALP-------GRKYDLIVSNPPYV 200 (284)
T ss_pred HHcCCCCcEEEEECchhhccC-------CCCccEEEECCCCC
Confidence 999998779999999876542 34799999999984
No 24
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.40 E-value=3.4e-12 Score=124.88 Aligned_cols=96 Identities=20% Similarity=0.124 Sum_probs=78.7
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-+|.+|||+|||+|.+++.|+++|+ +|+++|+++.|++.+++|++.|++.++++++++|+.+++..+.. ....+|+|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~--~~~~~dvv 125 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK--KPTFDNVI 125 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc--cCCCceEE
Confidence 3689999999999999999999986 89999999999999999999999987799999999888765321 12348999
Q ss_pred EeCCCcchHHHHHHHHHHhc
Q 007525 504 VMNLPNDATEFLDAFRGIYR 523 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk 523 (600)
++|||+.. .....+..++.
T Consensus 126 ~~DPPy~~-~~~~~~l~~l~ 144 (189)
T TIGR00095 126 YLDPPFFN-GALQALLELCE 144 (189)
T ss_pred EECcCCCC-CcHHHHHHHHH
Confidence 99999964 34444444443
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.39 E-value=2.9e-12 Score=122.57 Aligned_cols=92 Identities=29% Similarity=0.333 Sum_probs=78.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++..|||+|||+|.+++.+++++. +|+++|+|+.|++.+++|++.|++++ +++++.|..+.+. ..+||.|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-------~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-------DGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-------TTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-------ccceeEE
Confidence 678999999999999999999863 69999999999999999999999998 9999999987652 4689999
Q ss_pred EeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 504 VMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
++|||.. ..+|+..+.+.|+++
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 9999973 246788889999886
No 26
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.38 E-value=1.5e-12 Score=127.19 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-+|.+|||+|||+|.+++.|+++|+ +|+.||.|+.++..+++|++.-++.++++++++|+..++.++.. ...+||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~--~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK--KGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH--CTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc--cCCCceEE
Confidence 3689999999999999999999985 99999999999999999999999988899999999999876532 25789999
Q ss_pred EeCCCcchHHHHHHHHHHhc
Q 007525 504 VMNLPNDATEFLDAFRGIYR 523 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk 523 (600)
++|||+.....+..+...+.
T Consensus 119 flDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 119 FLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp EE--STTSCHHHHHHHHHHH
T ss_pred EECCCcccchHHHHHHHHHH
Confidence 99999975443344444443
No 27
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.37 E-value=6.6e-12 Score=127.85 Aligned_cols=116 Identities=20% Similarity=0.105 Sum_probs=87.5
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhcCC---CCCeEEEEeeechHHHHHHhhC--CCEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFN---FKDVVCDVFAGVGPICIPAAKI--VKRV 451 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~---~ge~VLDlfAGvG~FaIpaAkk--g~~V 451 (600)
++.+|-|.. .+ .|..|.+++..| + |+-.+|. +.++..+. .+.+|+|+|||+|.+++.+++. +.+|
T Consensus 42 Pl~yi~g~~----~f--~g~~~~v~~~vf-~-pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v 113 (251)
T TIGR03704 42 PLEHVLGWA----EF--CGLRIAVDPGVF-V-PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIEL 113 (251)
T ss_pred CHHHhcccC----eE--cCeEEEECCCCc-C-CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEE
Confidence 344555653 23 788999999754 4 6667776 33333332 3458999999999999999875 4699
Q ss_pred EEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 452 YANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 452 ~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+|+|+|+.|++.+++|++.|++ +++++|+.+.+.... ..+||.||+|||+.
T Consensus 114 ~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~----~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 114 HAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTAL----RGRVDILAANAPYV 164 (251)
T ss_pred EEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhc----CCCEeEEEECCCCC
Confidence 9999999999999999999873 689999987654321 24799999999984
No 28
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.37 E-value=5.1e-12 Score=128.72 Aligned_cols=144 Identities=20% Similarity=0.289 Sum_probs=107.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.....+|||+|||+|..++.+|++ . ++|+|||+.+++++.|++|+++|+++.+|+++++|..++.+... ..+||
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~----~~~fD 117 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV----FASFD 117 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----ccccC
Confidence 344789999999999999999998 4 69999999999999999999999999999999999999976532 34699
Q ss_pred EEEeCCCcch----------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHH
Q 007525 502 QVVMNLPNDA----------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIAL 559 (600)
Q Consensus 502 ~VVmNpP~~a----------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L 559 (600)
+||||||+.. .+++..+..+++++ | .+.+|| . .+|+.+.+
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~---G--~l~~V~------r-------~erl~ei~ 179 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG---G--RLAFVH------R-------PERLAEII 179 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC---C--EEEEEe------c-------HHHHHHHH
Confidence 9999999841 25788888888876 2 122232 1 12333222
Q ss_pred hhcc-cceEEEEeEEecCCC----cEEEEEEEecc
Q 007525 560 VEVA-VNVEMRRVRLVAPGK----WMLCASFVLPE 589 (600)
Q Consensus 560 ~~~~-~~~~v~~VR~VAP~K----~mycvsFrlp~ 589 (600)
.... ..++..++..|.|.. .++-+.++...
T Consensus 180 ~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 180 ELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred HHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 1111 246677788888876 45666666543
No 29
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=8.6e-12 Score=130.69 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=90.0
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHh-cCCC-C-CeEEEEeeechHHHHHHhhC--CCEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLS-GFNF-K-DVVCDVFAGVGPICIPAAKI--VKRV 451 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~-~l~~-g-e~VLDlfAGvG~FaIpaAkk--g~~V 451 (600)
++.+|.|... + .|..|++++.. |+ +|-.+|. ..++. .+.. + .+|||+|||+|.+++.+|+. +.+|
T Consensus 89 Pl~yi~g~~~----F--~g~~f~v~~~v-li-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V 160 (307)
T PRK11805 89 PAAYLTNEAW----F--CGLEFYVDERV-LV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEV 160 (307)
T ss_pred cHHHHcCcce----E--cCcEEEECCCC-cC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEE
Confidence 3444556532 3 68899999865 55 5655554 22232 2332 2 68999999999999999986 4699
Q ss_pred EEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 452 YANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 452 ~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+|+|+|+.+++.+++|++.|++.++++++++|+.+.+. ..+||.|++|||+.
T Consensus 161 ~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-------~~~fDlIvsNPPyi 212 (307)
T PRK11805 161 DAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-------GRRYDLIVSNPPYV 212 (307)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC-------CCCccEEEECCCCC
Confidence 99999999999999999999998789999999876542 34799999999984
No 30
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.3e-12 Score=124.98 Aligned_cols=87 Identities=30% Similarity=0.281 Sum_probs=76.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-.|.+|+|+|||+|.+|+.++..| ++|+|+|++|+|++.+++|+..+ .++|+++++|+.++ ...+|.|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~---------~~~~dtv 112 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF---------RGKFDTV 112 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc---------CCccceE
Confidence 367899999999999999999998 59999999999999999999983 33599999999987 3579999
Q ss_pred EeCCCcch------HHHHHHHHHHh
Q 007525 504 VMNLPNDA------TEFLDAFRGIY 522 (600)
Q Consensus 504 VmNpP~~a------~eFLdaa~~lL 522 (600)
|||||..+ ..||+.|.++-
T Consensus 113 imNPPFG~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 113 IMNPPFGSQRRHADRPFLLKALEIS 137 (198)
T ss_pred EECCCCccccccCCHHHHHHHHHhh
Confidence 99999864 48999998875
No 31
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=8e-12 Score=129.45 Aligned_cols=104 Identities=25% Similarity=0.163 Sum_probs=83.4
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcCCCCC-eEEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGFNFKD-VVCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~~ge-~VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNakl 470 (600)
.|+.|.++... | .||..||. ..++....... .|+|+|||+|.+|+.+|+.+. .|+|+|+||+|++.+++|++.
T Consensus 79 ~gl~~~v~~~v-l-iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 79 GGLRFKVDEGV-L-IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cceeeeeCCCc-e-ecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 78888888764 3 47878886 33332333333 799999999999999999864 999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|++. ++.++++|.++-++ ++||.||.|||+-
T Consensus 157 ~~l~-~~~~~~~dlf~~~~--------~~fDlIVsNPPYi 187 (280)
T COG2890 157 NGLV-RVLVVQSDLFEPLR--------GKFDLIVSNPPYI 187 (280)
T ss_pred cCCc-cEEEEeeecccccC--------CceeEEEeCCCCC
Confidence 9994 47777778877652 4899999999983
No 32
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.30 E-value=2.6e-11 Score=125.13 Aligned_cols=106 Identities=25% Similarity=0.252 Sum_probs=85.7
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcC--C-CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGF--N-FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l--~-~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa 468 (600)
.|..|.+++.. |. ||..+|. ..+++.+ . ++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.+++|+
T Consensus 81 ~g~~f~v~~~v-li-Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 81 YGLEFFVNEHV-LI-PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred cCeEEEECCCC-cC-CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 68889999874 43 7777776 3333332 2 22689999999999999999863 69999999999999999999
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+.|++.++++++++|+.+.+. ..+||.||+|||+.
T Consensus 159 ~~~~~~~~v~~~~~d~~~~~~-------~~~fDlIvsNPPyi 193 (284)
T TIGR00536 159 EKNQLEHRVEFIQSNLFEPLA-------GQKIDIIVSNPPYI 193 (284)
T ss_pred HHcCCCCcEEEEECchhccCc-------CCCccEEEECCCCC
Confidence 999998779999999876431 23799999999984
No 33
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.29 E-value=3.1e-11 Score=118.32 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=92.7
Q ss_pred ccccccccceeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHhcC----CCCCeEEEEeeechHHHHHHh
Q 007525 370 AIHNDYRTMQLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLSGF----NFKDVVCDVFAGVGPICIPAA 445 (600)
Q Consensus 370 ~I~ge~R~~~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l----~~ge~VLDlfAGvG~FaIpaA 445 (600)
.|.|++|+..+.+..|...- |....-|+.+.+.+ -.|.++||+|||+|..++.|+
T Consensus 4 Ii~G~~kgr~L~~p~~~~~R---------------------PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAl 62 (187)
T COG0742 4 IIGGKYKGRKLKTPDGPGTR---------------------PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEAL 62 (187)
T ss_pred EEeccccCCcccCCCCCCcC---------------------CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHH
Confidence 35677777777777664321 11112233344433 458999999999999999999
Q ss_pred hCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHH
Q 007525 446 KIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFL 515 (600)
Q Consensus 446 kkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFL 515 (600)
++|+ +|+.+|.|..++..+++|++.-++..+++++.+|+..+++++.. ...||.|++|||+. .+.+
T Consensus 63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---~~~FDlVflDPPy~-~~l~ 129 (187)
T COG0742 63 SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---REPFDLVFLDPPYA-KGLL 129 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC---CCcccEEEeCCCCc-cchh
Confidence 9986 99999999999999999999999888899999999988766431 23599999999996 4444
No 34
>PRK14967 putative methyltransferase; Provisional
Probab=99.28 E-value=5.3e-11 Score=118.33 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+.++++|||+|||+|.+++.+++.+. +|+++|+|+.+++.+++|++.+++. ++++++|+.+.+. ...||.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~-------~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVE-------FRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhcc-------CCCeeE
Confidence 56789999999999999999999875 9999999999999999999999883 8899999876532 357999
Q ss_pred EEeCCCcch-------------------------HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-------------------------~eFLdaa~~lLk~~ 525 (600)
|++|||+.. ..+++.+.+.++++
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 999999641 23667778888876
No 35
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.28 E-value=5.7e-11 Score=129.06 Aligned_cols=117 Identities=17% Similarity=0.109 Sum_probs=92.4
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYAN 454 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~Av 454 (600)
++..|-|... . .|..|.+++..+. ||..+|. +.+++.+.++.+|||+|||+|.+++.+++. +++|+|+
T Consensus 210 PlqYIlG~~~----F--~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAV 281 (423)
T PRK14966 210 PVAYILGVRE----F--YGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRAS 281 (423)
T ss_pred CceeEeeeee----e--cCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEE
Confidence 4555666532 3 7889999988543 8888887 445555667789999999999999999874 5799999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|+|+.|++.+++|++.|++ +++++++|..+... . ...+||.|++|||+.
T Consensus 282 DiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l--~---~~~~FDLIVSNPPYI 330 (423)
T PRK14966 282 DISPPALETARKNAADLGA--RVEFAHGSWFDTDM--P---SEGKWDIIVSNPPYI 330 (423)
T ss_pred ECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccc--c---cCCCccEEEECCCCC
Confidence 9999999999999999986 49999999866421 0 124799999999983
No 36
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.27 E-value=7.4e-11 Score=118.77 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=109.0
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcC
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNg 472 (600)
+|++.+=.. +.+.+..-... ++. .++|++|||.|.|-|++||.++++|+ .|+.+|.||..++.+.-|--.-+
T Consensus 107 dGIrMhrt~----~tdP~~Dt~~K-v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~ 181 (287)
T COG2521 107 DGIRMHRTK----GTDPLEDTLAK-VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRE 181 (287)
T ss_pred ccEEEeccc----CcCcHHHHHhh-hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcc
Confidence 898887322 22332222222 223 56799999999999999999999998 99999999999999887754444
Q ss_pred CC-CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 473 LE-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 473 l~-nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+. -.++++.||+.++++.+. +++||.||-|||+++ .+|.+++.++|+++ | ..+|+-.....
T Consensus 182 l~~~~i~iilGD~~e~V~~~~----D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg---G----rlFHYvG~Pg~ 250 (287)
T COG2521 182 LFEIAIKIILGDAYEVVKDFD----DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG---G----RLFHYVGNPGK 250 (287)
T ss_pred ccccccEEecccHHHHHhcCC----ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC---C----cEEEEeCCCCc
Confidence 42 248999999999998753 578999999999974 58999999999987 3 47887654432
Q ss_pred CCCchhHHHHHHHHHhh
Q 007525 545 RDPEFDFHERIRIALVE 561 (600)
Q Consensus 545 ~d~~~di~eRI~~~L~~ 561 (600)
.--..++...+.+.|..
T Consensus 251 ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 251 RYRGLDLPKGVAERLRR 267 (287)
T ss_pred ccccCChhHHHHHHHHh
Confidence 11122555666655543
No 37
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.24 E-value=7.9e-11 Score=120.60 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|.. ...|+|+|+++.+++.+++|++.+++.+ |+++++|+..+... ...|
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~------~~~f 141 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAA------VPKF 141 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhh------ccCC
Confidence 568999999999999999998874 3589999999999999999999999986 99999999876321 3469
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|+|++|||.+. .++|..+.++++++
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999763 24778888888876
No 38
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.23 E-value=7.6e-11 Score=103.03 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+|.+|||+|||+|.+++.+++ .+++|+|+|++|++++.+++|+..++..++++++++|+ ..... ....||.|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----FLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----TSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----cCCCCCEE
Confidence 578999999999999999999 68899999999999999999998888888899999999 33211 24579999
Q ss_pred EeCC-Cc---c----hHHHHHHHHHHhcCC
Q 007525 504 VMNL-PN---D----ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNp-P~---~----a~eFLdaa~~lLk~~ 525 (600)
+++. -. . ..++++.+.+.++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 9977 11 1 135788889999886
No 39
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.22 E-value=1.1e-10 Score=112.02 Aligned_cols=101 Identities=27% Similarity=0.343 Sum_probs=83.8
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|+|+|||+|.+++.+++.+.+|+++|+||++++.+++|++.|++. ++++++|+.+.. ..+||.|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~--------~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV--------RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc--------CCcccEEE
Confidence 45678999999999999999998889999999999999999999999873 899999987643 24799999
Q ss_pred eCCCcc-------------------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 505 MNLPND-------------------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 505 mNpP~~-------------------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|||.. ...+++.+.++++++ |++.++....
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g--------G~~~~~~~~~ 143 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG--------GRVQLIQSSL 143 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC--------CEEEEEEecc
Confidence 999973 135788888888876 4666665444
No 40
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.22 E-value=6.5e-11 Score=124.59 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=83.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+++|+.|+|+|||+|.+++.++..|..|+|+|+|+.+++.++.|++.+++.+ +.++++|+.+... ....||.|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~------~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL------SSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc------ccCCCCEE
Confidence 6789999999999999999999999999999999999999999999999987 8999999987531 13579999
Q ss_pred EeCCCcch-------------HHHHHHHHHHhcCC
Q 007525 504 VMNLPNDA-------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a-------------~eFLdaa~~lLk~~ 525 (600)
++|||+.. .+++..+.+.|+++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 99999731 35788888888876
No 41
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.20 E-value=2.6e-10 Score=113.49 Aligned_cols=105 Identities=23% Similarity=0.190 Sum_probs=81.4
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcCC-CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGFN-FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~-~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNakl 470 (600)
.|.+|.++...+ .++..++. ..+++.+. .+.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.
T Consensus 56 ~~~~~~~~~~~~--~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 56 YGLDFKVSPGVL--IPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred eceEEEECCCcc--cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 455666665533 24444443 34444443 3458999999999999999986 46999999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+++.+ ++++++|+.+.. ..++||.|++|||+.
T Consensus 134 ~~~~~-~~~~~~d~~~~~-------~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 134 LGLDN-VTFLQSDWFEPL-------PGGKFDLIVSNPPYI 165 (251)
T ss_pred cCCCe-EEEEECchhccC-------cCCceeEEEECCCCC
Confidence 99974 999999987643 146799999999975
No 42
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.18 E-value=1.3e-09 Score=117.65 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=90.0
Q ss_pred EEeccEEEEEecCeeeecChhHHHHHHHHhcCCC--CCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATERQRLLSGFNF--KDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l~~--ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa 468 (600)
+.+.+++|.-.++ ||=-.++..=-+-+++.+.. +.+|||+|||+|.+++.+++++ .+|+++|+|+.|++.+++|+
T Consensus 194 ~~~~~~~~~~~~g-VFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 194 LEGTDWTIHNHAN-VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred EcCceEEEEecCC-ccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3334445544444 33222332111234444432 4689999999999999999873 69999999999999999999
Q ss_pred HHcCCC--CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 469 VLNKLE--KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 469 klNgl~--nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
+.|+.. .+++++.+|+.+.+. ..+||.|++|||.. +.+++..+.+.|+++
T Consensus 273 ~~n~~~~~~~v~~~~~D~l~~~~-------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 273 ETNMPEALDRCEFMINNALSGVE-------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred HHcCcccCceEEEEEccccccCC-------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence 999864 258999999865431 35799999999974 246788888888876
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.18 E-value=3.5e-10 Score=110.53 Aligned_cols=97 Identities=18% Similarity=0.277 Sum_probs=81.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|+|+|||+|.+++.+|+. +.+|+|+|+++.+++.+++|++.+++.++++++++|+.+++... ...|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-----~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-----NEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----CCCC
Confidence 668999999999999999999874 35999999999999999999999997556999999998876431 3579
Q ss_pred cEEEeCCCc-chHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~-~a~eFLdaa~~lLk~~ 525 (600)
|+|+++... ....+++.+.++++++
T Consensus 113 D~V~~~~~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 113 DRIFIGGGSEKLKEIISASWEIIKKG 138 (198)
T ss_pred CEEEECCCcccHHHHHHHHHHHcCCC
Confidence 999997643 2357889999999876
No 44
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.17 E-value=4.2e-10 Score=116.59 Aligned_cols=133 Identities=20% Similarity=0.189 Sum_probs=102.6
Q ss_pred eccEEEEEecCeeeecChhHHHH--HHHH-hcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 395 FHHLSLFRCFDTIYWNSKLATER--QRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 395 EnG~~F~vD~~kfy~n~Rl~tEr--~Riv-~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNakl 470 (600)
++.....+|+...|-.-...+.+ .+++ ....++++|||+|||+|.+++.+++.|. +|+|+|+++.+++.+++|++.
T Consensus 125 ~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 125 EDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 35677889999888765444443 2222 2356789999999999999999998875 899999999999999999999
Q ss_pred cCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 471 NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 471 Ngl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++.+++.++.+|.... ...+||.|++|..... ..++..+.++++++ |++.+-.+..
T Consensus 205 n~~~~~~~~~~~~~~~~--------~~~~fDlVvan~~~~~l~~ll~~~~~~Lkpg--------G~li~sgi~~ 262 (288)
T TIGR00406 205 NQVSDRLQVKLIYLEQP--------IEGKADVIVANILAEVIKELYPQFSRLVKPG--------GWLILSGILE 262 (288)
T ss_pred cCCCcceEEEecccccc--------cCCCceEEEEecCHHHHHHHHHHHHHHcCCC--------cEEEEEeCcH
Confidence 99987788888773322 1357999999986543 36788889999886 5777666543
No 45
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=3.5e-10 Score=117.87 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=91.3
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN 471 (600)
.+++|.-+++-|=++ ++..=-+-+++.+ ..+..|+|+|||.|++++.+|+.. .+|+.+|+|..|++.+++|++.|
T Consensus 127 ~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 127 HELTFKTLPGVFSRD-KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred CceEEEeCCCCCcCC-CcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 456666666544333 2211112344432 234599999999999999999985 59999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch---------HHHHHHHHHHhcCC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------TEFLDAFRGIYRDR 525 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a---------~eFLdaa~~lLk~~ 525 (600)
++++. +++..|..+-+. ++||.||||||..+ .+++..+.+.|+++
T Consensus 206 ~~~~~-~v~~s~~~~~v~--------~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 206 GVENT-EVWASNLYEPVE--------GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred CCCcc-EEEEeccccccc--------ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 99974 788888877652 37999999999852 37888999999876
No 46
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-09 Score=114.47 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=92.5
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHH-hcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv-~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklN 471 (600)
+.+..++||+-.|=.-...|-+ .+.+ +...+|.+|+|+|||+|-+||.+++.|+ +|+|+|++|.|++.+++|+++|
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc
Confidence 4567888888766544433333 1222 3477999999999999999999999986 7999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
++...+..-..+..+.+ ..++||+||.|--+.. ..+.+.+.+.++++
T Consensus 209 ~v~~~~~~~~~~~~~~~-------~~~~~DvIVANILA~vl~~La~~~~~~lkpg 256 (300)
T COG2264 209 GVELLVQAKGFLLLEVP-------ENGPFDVIVANILAEVLVELAPDIKRLLKPG 256 (300)
T ss_pred CCchhhhcccccchhhc-------ccCcccEEEehhhHHHHHHHHHHHHHHcCCC
Confidence 99853333333333332 1358999999986543 36778889999886
No 47
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.15 E-value=1.3e-10 Score=129.43 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=92.5
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhcCC--------------------------CCCeE
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSGFN--------------------------FKDVV 430 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~--------------------------~ge~V 430 (600)
++.+|.|.. .. .|..|.+++.- +.||-.||- +.+++.+. ++.+|
T Consensus 71 PlqYI~G~~----~F--~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 142 (506)
T PRK01544 71 PIAYITGVK----EF--YSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNI 142 (506)
T ss_pred CHHHHhCcC----EE--cCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEE
Confidence 444556653 24 78999999875 568888887 33333221 34689
Q ss_pred EEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC
Q 007525 431 CDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 508 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP 508 (600)
||+|||+|.+++.+|+. +.+|+|+|+|+.|++.+++|++.|++.+++.++++|+.+.+. ..+||.||+|||
T Consensus 143 LDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlIvsNPP 215 (506)
T PRK01544 143 LELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFIVSNPP 215 (506)
T ss_pred EEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEEEECCC
Confidence 99999999999998875 469999999999999999999999998789999999876431 357999999999
Q ss_pred cc
Q 007525 509 ND 510 (600)
Q Consensus 509 ~~ 510 (600)
+.
T Consensus 216 Yi 217 (506)
T PRK01544 216 YI 217 (506)
T ss_pred CC
Confidence 74
No 48
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.15 E-value=6.8e-10 Score=118.18 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=98.5
Q ss_pred EEeccEEEEEecCeeeecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH
Q 007525 393 LLFHHLSLFRCFDTIYWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 393 vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa 468 (600)
..-.++.+...+..|.++.-...-+ .+++.+ ....+|||+|||.|.+++.+++++ .+|+++|+|+.|++.+++|+
T Consensus 162 y~~~~l~i~~~pgvFs~~~lD~gt~-lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 162 YQVDGLTVKTLPGVFSRDGLDVGSQ-LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL 240 (342)
T ss_pred eecCCEEEEeCCCCCCCCCCCHHHH-HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3335677888887777754433222 233322 234589999999999999999874 59999999999999999999
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc---------hHHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND---------ATEFLDAFRGIYRDRPEDAKFTFPKIHLY 539 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY 539 (600)
+.|++. .+++.+|+.+.+ .++||.||+|||.. ...++..+.+.|+++ |.+.+.
T Consensus 241 ~~n~l~--~~~~~~D~~~~~--------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg--------G~L~iV 302 (342)
T PRK09489 241 AANGLE--GEVFASNVFSDI--------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG--------GELRIV 302 (342)
T ss_pred HHcCCC--CEEEEccccccc--------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC--------CEEEEE
Confidence 999986 467888876532 35799999999974 257889999999986 467666
Q ss_pred ecc
Q 007525 540 GFS 542 (600)
Q Consensus 540 ~F~ 542 (600)
...
T Consensus 303 an~ 305 (342)
T PRK09489 303 ANA 305 (342)
T ss_pred EeC
Confidence 543
No 49
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=9.8e-11 Score=122.36 Aligned_cols=131 Identities=26% Similarity=0.270 Sum_probs=96.3
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHH-hcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLL-SGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv-~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklN 471 (600)
+.+...+||+..|=.-...|-+ .+++ +...+|++|||+|||+|.+||.|++.|+ +|+|+|++|.|++.+++|+++|
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc
Confidence 5567889999888776666555 2233 3477899999999999999999999986 8999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
++.+++.+. ...+. ...+||+|+.|.-+.. ...++.+.++++++ |++-+=.+-.+
T Consensus 208 ~~~~~~~v~--~~~~~--------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~--------G~lIlSGIl~~ 263 (295)
T PF06325_consen 208 GVEDRIEVS--LSEDL--------VEGKFDLVVANILADVLLELAPDIASLLKPG--------GYLILSGILEE 263 (295)
T ss_dssp T-TTCEEES--CTSCT--------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEE--------EEEEEEEEEGG
T ss_pred CCCeeEEEE--Eeccc--------ccccCCEEEECCCHHHHHHHHHHHHHhhCCC--------CEEEEccccHH
Confidence 999877653 11222 1367999999987654 35667778888875 46666555443
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.13 E-value=7.4e-10 Score=108.62 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=86.9
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+.++.+|||+|||+|.+++.+|+. +++|+|+|+++.+++.+++|++.+++++ ++++++|+.++.. .++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~ 112 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEK 112 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCC
Confidence 44667899999999999999999863 5799999999999999999999999987 9999999987531 357
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
||.|+++--.....++..+.+.++++ |++.+..+.
T Consensus 113 fDlV~~~~~~~~~~~l~~~~~~LkpG--------G~lv~~~~~ 147 (187)
T PRK00107 113 FDVVTSRAVASLSDLVELCLPLLKPG--------GRFLALKGR 147 (187)
T ss_pred ccEEEEccccCHHHHHHHHHHhcCCC--------eEEEEEeCC
Confidence 99999985434467889999999987 466655433
No 51
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.13 E-value=6.6e-11 Score=113.95 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=62.8
Q ss_pred CeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 428 DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
++|+|+|||+|+-+|..|+.+.+|+|+|+||.-++.+++|++.-|+.++|+++++|..+.+..+.. ...+|.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEEECC
Confidence 479999999999999999999999999999999999999999999998999999999998754221 11289999999
Q ss_pred CcchHH
Q 007525 508 PNDATE 513 (600)
Q Consensus 508 P~~a~e 513 (600)
|-...+
T Consensus 78 PWGGp~ 83 (163)
T PF09445_consen 78 PWGGPS 83 (163)
T ss_dssp -BSSGG
T ss_pred CCCCcc
Confidence 986533
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.12 E-value=3.3e-10 Score=110.15 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++.+|||+|||+|.+++.+|..+ ++|+|+|+|+.+++.+++|++.+++++ ++++++|+.++. ...+||.|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~-------~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQ-------HEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhcc-------ccCCccEE
Confidence 48899999999999999988753 689999999999999999999999976 999999998752 13579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+++.-.....++..+.++++++
T Consensus 114 ~s~~~~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 114 TSRALASLNVLLELTLNLLKVG 135 (181)
T ss_pred EehhhhCHHHHHHHHHHhcCCC
Confidence 9986333456778888888876
No 53
>PRK04266 fibrillarin; Provisional
Probab=99.12 E-value=1.1e-09 Score=110.34 Aligned_cols=148 Identities=15% Similarity=0.052 Sum_probs=96.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|++|||+|||+|.+++.+|+.. .+|+|+|+++++++.+.++++.. . +|.++.+|+.+.... . .....||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~-nv~~i~~D~~~~~~~-~--~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K-NIIPILADARKPERY-A--HVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C-CcEEEECCCCCcchh-h--hccccCC
Confidence 5689999999999999999999873 58999999999999999888753 4 489999998752110 0 0124699
Q ss_pred EEEeCCCc--chHHHHHHHHHHhcCCCCCCCCCccEEEE-EeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEecCCC
Q 007525 502 QVVMNLPN--DATEFLDAFRGIYRDRPEDAKFTFPKIHL-YGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGK 578 (600)
Q Consensus 502 ~VVmNpP~--~a~eFLdaa~~lLk~~~~~g~~~~p~IHv-Y~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K 578 (600)
.|+.|.+. ....++..+.++|+++ |++-+ ..+.. .+...+. .|..+.....++..++..++.+....
T Consensus 144 ~i~~d~~~p~~~~~~L~~~~r~LKpG--------G~lvI~v~~~~-~d~~~~~-~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 144 VIYQDVAQPNQAEIAIDNAEFFLKDG--------GYLLLAIKARS-IDVTKDP-KEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred EEEECCCChhHHHHHHHHHHHhcCCC--------cEEEEEEeccc-ccCcCCH-HHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 99987754 2235688999999987 34433 11211 1111111 12222222333334555555555554
Q ss_pred c---EEEEEEEe
Q 007525 579 W---MLCASFVL 587 (600)
Q Consensus 579 ~---mycvsFrl 587 (600)
+ ||++.++.
T Consensus 214 ~~~~h~~~v~~~ 225 (226)
T PRK04266 214 YHKDHAAVVARK 225 (226)
T ss_pred CcCCeEEEEEEc
Confidence 5 99998874
No 54
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.10 E-value=7.5e-09 Score=99.96 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=77.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.+++.+ ++|+++|+|+.+++.+++|++.+++.+ ++++++|+...+ ...||
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~--------~~~~D 99 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIEL--------PGKAD 99 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhc--------CcCCC
Confidence 4678999999999999999999863 699999999999999999999999875 999999975322 24799
Q ss_pred EEEeCCCc-chHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~-~a~eFLdaa~~lLk~~ 525 (600)
.|+++... ...++++.+.+.|+++
T Consensus 100 ~v~~~~~~~~~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 100 AIFIGGSGGNLTAIIDWSLAHLHPG 124 (187)
T ss_pred EEEECCCccCHHHHHHHHHHhcCCC
Confidence 99998643 2456888888888876
No 55
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=2.6e-09 Score=108.26 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=80.4
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNak 469 (600)
.|..|.++... | .+|..+|. ..++.. ..++.+|+|+|||+|.+++.+++.. .+|+|+|+++.+++.+++|++
T Consensus 76 ~~~~~~~~~~~-l-ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 76 WGLDFKVSPGV-L-IPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cCcEEEECCCc-e-eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 46677777653 2 46666665 333322 3467899999999999999999874 699999999999999999999
Q ss_pred HcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 470 LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 470 lNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
++..+++.++++|+.+.+. ..+||+|++|||+.
T Consensus 154 -~~~~~~i~~~~~d~~~~~~-------~~~fD~Iv~npPy~ 186 (275)
T PRK09328 154 -HGLGARVEFLQGDWFEPLP-------GGRFDLIVSNPPYI 186 (275)
T ss_pred -hCCCCcEEEEEccccCcCC-------CCceeEEEECCCcC
Confidence 4444469999999855321 35799999999985
No 56
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.10 E-value=1.3e-09 Score=106.17 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=84.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++++|||+|||+|.+++.+|+. +++|+|+|+||++++.+++|++.+++.+ ++++++|+.+.+..+ ...+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~-----~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECLAQL-----APAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHHhhC-----CCCCC
Confidence 457899999999999999999864 4799999999999999999999999975 999999998755331 23468
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
.++++.......++..+.+.++++ |.+-++..
T Consensus 112 ~v~~~~~~~~~~~l~~~~~~Lkpg--------G~li~~~~ 143 (196)
T PRK07402 112 RVCIEGGRPIKEILQAVWQYLKPG--------GRLVATAS 143 (196)
T ss_pred EEEEECCcCHHHHHHHHHHhcCCC--------eEEEEEee
Confidence 888876544467899999999876 46666654
No 57
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=5.8e-10 Score=118.55 Aligned_cols=123 Identities=22% Similarity=0.290 Sum_probs=101.1
Q ss_pred eeecChhHHHHHHHH---hcCC-C-CCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEE
Q 007525 407 IYWNSKLATERQRLL---SGFN-F-KDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEV 479 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv---~~l~-~-ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~ 479 (600)
||+|++.+-.|.-.+ +.+. . ..+|+|.+||+|.=+|.+|.. +. +|+++|+||.|++.+++|+++|...+ ..+
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v 106 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEV 106 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-cee
Confidence 899999887774322 2222 1 678999999999999999986 44 89999999999999999999997665 788
Q ss_pred EEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 480 FNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 480 i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++|+..++.+. ...||+|=+||-.+...|+|++++..+.+ |.+++-+-..
T Consensus 107 ~n~DAN~lm~~~-----~~~fd~IDiDPFGSPaPFlDaA~~s~~~~--------G~l~vTATD~ 157 (380)
T COG1867 107 INKDANALLHEL-----HRAFDVIDIDPFGSPAPFLDAALRSVRRG--------GLLCVTATDT 157 (380)
T ss_pred ecchHHHHHHhc-----CCCccEEecCCCCCCchHHHHHHHHhhcC--------CEEEEEeccc
Confidence 889999998752 36799999999888889999999999875 4677665543
No 58
>PRK14968 putative methyltransferase; Provisional
Probab=99.09 E-value=8.6e-10 Score=104.72 Aligned_cols=94 Identities=31% Similarity=0.386 Sum_probs=80.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCc-EEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKK-IEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nr-V~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++.+|||+|||+|.+++.+++.+++|+|+|+++++++.+++|+..|++.++ +.++++|..+.+. ...||.|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-------GDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-------ccCceEE
Confidence 5788999999999999999999989999999999999999999999998755 8899999866432 2479999
Q ss_pred EeCCCcch-------------------------HHHHHHHHHHhcCC
Q 007525 504 VMNLPNDA-------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a-------------------------~eFLdaa~~lLk~~ 525 (600)
++|||... ..++..+.++++++
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 99998642 24678888888876
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.09 E-value=1.6e-09 Score=95.52 Aligned_cols=101 Identities=29% Similarity=0.317 Sum_probs=82.3
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
.+++. +.++++|+|+|||.|.+++.++++ +++|+++|+|+.+++.+++|++.+++.+ ++++++|+...+...
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 85 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDS--- 85 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhh---
Confidence 34443 456789999999999999999986 3699999999999999999999999875 899999987543221
Q ss_pred hcCCcccEEEeCCCc-chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~-~a~eFLdaa~~lLk~~ 525 (600)
..+||.|+++.+. ...++++.+.+.++++
T Consensus 86 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 86 --LPEPDRVFIGGSGGLLQEILEAIWRRLRPG 115 (124)
T ss_pred --cCCCCEEEECCcchhHHHHHHHHHHHcCCC
Confidence 3579999997643 3467899999999986
No 60
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=8.1e-10 Score=121.06 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=85.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+++. +++|+|+|+|+.+++.+++|++.+|+.+ |+++++|+.++.. ...|
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~-------~~~f 319 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSP-------EEQP 319 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCccccccc-------CCCC
Confidence 457899999999999999988874 3599999999999999999999999975 9999999987641 3579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|.|++|+|.++ .++|..+.++++++ |++.+.+.+-.
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg--------G~lvystcs~~ 381 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG--------GVLVYATCSIE 381 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC--------cEEEEEeCCCC
Confidence 99999999743 13678888888876 46655554443
No 61
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.08 E-value=4.1e-10 Score=111.36 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=77.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|||+|||+|++++.+|+.. .+|+++|+++++++.+++|++.+++++ ++++++|+.+.... ...|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~------~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEP------LAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcc------cCCC
Confidence 6789999999999999999999874 369999999999999999999999975 99999999765421 3579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+++.+.. ...+.+.+.|+++
T Consensus 148 D~Ii~~~~~~--~~~~~~~~~L~~g 170 (215)
T TIGR00080 148 DRIYVTAAGP--KIPEALIDQLKEG 170 (215)
T ss_pred CEEEEcCCcc--cccHHHHHhcCcC
Confidence 9999997653 3445677788876
No 62
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.07 E-value=6e-10 Score=103.84 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCeEEEEeeechHHHHHHhh-C--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAK-I--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAk-k--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++.+|||+|||+|.+++.+++ . +.+|+++|+|+++++.++++++.+++. +++++++|+.+ +...+ ...||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCee
Confidence 4678999999999999999994 3 579999999999999999999999999 49999999998 43101 15799
Q ss_pred EEEeCCCcc----hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 502 QVVMNLPND----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 502 ~VVmNpP~~----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+|+++.+.. ...++..+.++++++ |.+.+..+.
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~--------G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPG--------GILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCC--------cEEEEEECC
Confidence 999987642 246788999999876 455555554
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.07 E-value=1.5e-09 Score=106.79 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=83.1
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
++.+|||+|||+|.+++.+|+. +.+|+|+|+|+.+++.+++|++.+++.+ ++++++|+.+.+...+ ....||.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~---~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMF---PDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHc---CccccceE
Confidence 6789999999999999999886 3689999999999999999999999865 9999999944443222 24679999
Q ss_pred EeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+++.|.. ...++..+.++++++ |++.+.+
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg--------G~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG--------GEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCC--------CEEEEEc
Confidence 9975431 257899999999986 4666544
No 64
>PTZ00146 fibrillarin; Provisional
Probab=99.07 E-value=3.8e-09 Score=110.24 Aligned_cols=168 Identities=10% Similarity=0.011 Sum_probs=103.4
Q ss_pred cEEEEEecCeeeecChhHHHHHHHHh----c-CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHH
Q 007525 397 HLSLFRCFDTIYWNSKLATERQRLLS----G-FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 397 G~~F~vD~~kfy~n~Rl~tEr~Riv~----~-l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNa 468 (600)
++.|++ ||+.-+.=-..|+. . ++++++|||+|||+|+++.++|... ..|||+|+++++.+.+.+-+
T Consensus 104 ~~eyR~------w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 104 KIEYRV------WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred cceeee------eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 455664 77764432223322 1 6799999999999999999999873 58999999999887777665
Q ss_pred HHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc--chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC-C
Q 007525 469 VLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN--DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA-R 545 (600)
Q Consensus 469 klNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~--~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~-~ 545 (600)
+.. . +|.++.+|++.-..... ....+|+|++|... .+..++.++.+.|+++ +.+-+ .+.+. .
T Consensus 178 k~r--~-NI~~I~~Da~~p~~y~~---~~~~vDvV~~Dva~pdq~~il~~na~r~LKpG--------G~~vI-~ika~~i 242 (293)
T PTZ00146 178 KKR--P-NIVPIIEDARYPQKYRM---LVPMVDVIFADVAQPDQARIVALNAQYFLKNG--------GHFII-SIKANCI 242 (293)
T ss_pred hhc--C-CCEEEECCccChhhhhc---ccCCCCEEEEeCCCcchHHHHHHHHHHhccCC--------CEEEE-EEecccc
Confidence 432 3 38899999875321100 13479999998743 2335667888899986 34444 33332 2
Q ss_pred CCchhHHHHHHHHHhhcccc--eEEEEeEEecCC-CcEEEEEEE
Q 007525 546 DPEFDFHERIRIALVEVAVN--VEMRRVRLVAPG-KWMLCASFV 586 (600)
Q Consensus 546 d~~~di~eRI~~~L~~~~~~--~~v~~VR~VAP~-K~mycvsFr 586 (600)
+...+.++++++++ ..++. +....+.+..|. +.|.++..+
T Consensus 243 d~g~~pe~~f~~ev-~~L~~~GF~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 243 DSTAKPEVVFASEV-QKLKKEGLKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred ccCCCHHHHHHHHH-HHHHHcCCceEEEEecCCccCCcEEEEEE
Confidence 22235556655444 22222 333333344443 355555444
No 65
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.06 E-value=2.7e-09 Score=107.73 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=84.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+..+|||+|||+|+-++.+|+. +++|+++|+++++++.+++|++.+++.++|+++++|+.+.+..+....+.+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 556889999999999977777653 36999999999999999999999999988999999999998776432224689
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
|.|++|.+.. -..+++.+.++++++
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 9999997543 246788888999886
No 66
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=2e-09 Score=109.01 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+|+.|.+|+++|+++.+++.++++++.+++.++++++++|+.++... ..+.||.|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-----~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-----LETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----cCCCCCEEE
Confidence 456899999999999999999999999999999999999999999999877799999999886432 246899999
Q ss_pred eCCCc----chHHHHHHHHHHhcCC
Q 007525 505 MNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+.... ....++..+.++++++
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCC
Confidence 86542 2346789999999987
No 67
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=1.2e-09 Score=119.68 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=81.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||+|.+++.+|+. +++|+|+|+++.+++.+++|++.+|+.+ ++++++|+.+....+ .+.|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~-----~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKF-----AEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchh-----cccC
Confidence 567899999999999999999985 3699999999999999999999999987 999999998764321 2579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|.|++|||.++ .++|..+.++++++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999642 24788888899886
No 68
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=2.5e-09 Score=117.07 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=70.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|.. +.+|+|+|+++.+++.+++|++..|+.+ ++++++|+.++... . .+.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~-~----~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEY-V----QDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhh-h----hccC
Confidence 568999999999999999999875 4699999999999999999999999986 99999999876421 1 3579
Q ss_pred cEEEeCCCcc
Q 007525 501 TQVVMNLPND 510 (600)
Q Consensus 501 D~VVmNpP~~ 510 (600)
|.|++|+|.+
T Consensus 309 D~Vl~DaPCs 318 (431)
T PRK14903 309 DRILVDAPCT 318 (431)
T ss_pred CEEEECCCCC
Confidence 9999999994
No 69
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=1.4e-09 Score=118.86 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=81.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|..++.+|+. .++|+|+|+++.+++.+++|++.+|+.+ |+++++|+.+...... ...+.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~--~~~~~f 326 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKP--QWRGYF 326 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccc--cccccC
Confidence 567999999999999999999975 2589999999999999999999999986 9999999987642100 013579
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
|.|++|+|.++ .++|+.+.++++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999752 25688888888876
No 70
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.04 E-value=2.4e-09 Score=110.62 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=87.0
Q ss_pred EEEEecCeeeecChhH----HHHHHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC
Q 007525 399 SLFRCFDTIYWNSKLA----TERQRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE 474 (600)
Q Consensus 399 ~F~vD~~kfy~n~Rl~----tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~ 474 (600)
.|..++..+|+..... .+-..++..+ ++.+|||+|||+|.+++++|+.|.+|+|+|+|+.+++.+++|++.+++
T Consensus 90 ~fy~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l- 167 (287)
T PRK12335 90 SFYCKPEDYFHKKYNLTATHSEVLEAVQTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL- 167 (287)
T ss_pred EEEEcchhhHhhhhccccccHHHHHHhhcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-
Confidence 4666666655544321 1112222233 445999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC------cchHHHHHHHHHHhcCC
Q 007525 475 KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP------NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 475 nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP------~~a~eFLdaa~~lLk~~ 525 (600)
+ +++...|+.... ..+.||.|++... .....++..+.+.++++
T Consensus 168 ~-v~~~~~D~~~~~-------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 168 N-IRTGLYDINSAS-------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred c-eEEEEechhccc-------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 3 888888886532 1367999987643 22346888888899886
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.04 E-value=2.3e-09 Score=104.75 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=86.2
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+.+|||+|||.|.+++.+|++ ...|+|+|+++.+++.+++|++.+++.| ++++++|+.++..... +.+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~---~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFF---PDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhC---CCCceeEE
Confidence 5679999999999999999987 3689999999999999999999999985 9999999998765433 23579999
Q ss_pred EeCCCcc------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 504 VMNLPND------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 504 VmNpP~~------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
++|+|.. ..+++..+.++|+++ |.+++-+
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg--------G~l~~~t 132 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG--------GVIHFKT 132 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCC--------CEEEEEe
Confidence 9997642 147899999999987 5776644
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=1.9e-09 Score=106.35 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=81.0
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~ 492 (600)
.++++. +.++++|||+|||+|+++..+++. +++|+++|+++++++.+++|++.+++.++++++++|+.+.+..
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-- 139 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-- 139 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--
Confidence 344444 467899999999999999988875 3699999999999999999999999987799999999875421
Q ss_pred HhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||.|+++-... .+.+.+.+.|+++
T Consensus 140 ----~~~fD~Ii~~~~~~--~~~~~l~~~L~~g 166 (205)
T PRK13944 140 ----HAPFDAIIVTAAAS--TIPSALVRQLKDG 166 (205)
T ss_pred ----CCCccEEEEccCcc--hhhHHHHHhcCcC
Confidence 35799999986542 4456777888876
No 73
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.02 E-value=3.1e-09 Score=104.16 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=78.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.+++.+|++|.+|+|+|+++.+++.++++++.+++.+ +++.++|+.++. ....||.|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~-------~~~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLT-------FDGEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCC-------cCCCcCEEE
Confidence 456899999999999999999999999999999999999999999999975 899999987642 135699998
Q ss_pred eCCCc------chHHHHHHHHHHhcCC
Q 007525 505 MNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP~------~a~eFLdaa~~lLk~~ 525 (600)
++... ....++..+.++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCC
Confidence 76432 2357889999999986
No 74
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.01 E-value=4.8e-10 Score=108.87 Aligned_cols=81 Identities=28% Similarity=0.353 Sum_probs=63.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CE---------EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KR---------VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~---------V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~ 492 (600)
.++|+.|+|.|||+|++.|.+|..+ .. ++|.|+++.+++.+++|++..++.+.+.+.+.|+.++..
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~--- 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL--- 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG---
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc---
Confidence 6789999999999999999999763 34 889999999999999999999998889999999998751
Q ss_pred HhhcCCcccEEEeCCCcc
Q 007525 493 ASQKAHKITQVVMNLPND 510 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~ 510 (600)
..+.+|.||+|||+.
T Consensus 103 ---~~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 103 ---PDGSVDAIVTNPPYG 117 (179)
T ss_dssp ---TTSBSCEEEEE--ST
T ss_pred ---ccCCCCEEEECcchh
Confidence 246899999999995
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.01 E-value=5e-09 Score=106.26 Aligned_cols=126 Identities=23% Similarity=0.231 Sum_probs=92.6
Q ss_pred ccEEEEEecCeeeecChhHHHH---HHHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHc
Q 007525 396 HHLSLFRCFDTIYWNSKLATER---QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr---~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklN 471 (600)
+.....+|+.-.|-.-...+-+ ..+.....++.+|||+|||+|..++.+++.|. +|+|+|++|.+++.+++|++.|
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred CeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 4455677777666544333222 12223366899999999999999999988876 6999999999999999999999
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 472 KLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 472 gl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.+.+.+..+|. +||.|++|.... ...+++.+.+.++++ |++.+..+..
T Consensus 166 ~~~~~~~~~~~~~--------------~fD~Vvani~~~~~~~l~~~~~~~Lkpg--------G~lilsgi~~ 216 (250)
T PRK00517 166 GVELNVYLPQGDL--------------KADVIVANILANPLLELAPDLARLLKPG--------GRLILSGILE 216 (250)
T ss_pred CCCceEEEccCCC--------------CcCEEEEcCcHHHHHHHHHHHHHhcCCC--------cEEEEEECcH
Confidence 9965566544432 599999997654 246778888889886 4666665543
No 76
>PLN02476 O-methyltransferase
Probab=99.01 E-value=6.3e-09 Score=108.09 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=93.2
Q ss_pred cChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH
Q 007525 410 NSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486 (600)
Q Consensus 410 n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare 486 (600)
....+.+-.+++-...+..+|||+|+|+|+.++.+|+. +.+|+++|.+++.++.+++|++.+|+.++|+++.+|+.+
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34444443344434566889999999999999999974 458999999999999999999999999889999999999
Q ss_pred HHHHHHHhhcCCcccEEEeCCCcch-HHHHHHHHHHhcCC
Q 007525 487 FIDAMFASQKAHKITQVVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
.++.+..+...+.||.|++|.+... .++++.+.++++++
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 9987543222357999999998643 57788888888876
No 77
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.00 E-value=4.1e-09 Score=104.25 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=88.5
Q ss_pred HHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHH
Q 007525 416 ERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA 490 (600)
Q Consensus 416 Er~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~ 490 (600)
.++.+++. +.++++|||+|||+|.+++.+++. +++|+++|+++.+++.+++|++.+++.+ ++++++|+.+..
T Consensus 33 ~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-- 109 (231)
T TIGR02752 33 WRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELP-- 109 (231)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCC--
Confidence 34445544 457899999999999999999875 3599999999999999999999888864 999999997752
Q ss_pred HHHhhcCCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 491 MFASQKAHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
. +.++||.|+++... ...+++.++.++|+++ |++.+.++..
T Consensus 110 -~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g--------G~l~~~~~~~ 154 (231)
T TIGR02752 110 -F---DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG--------GKVVCLETSQ 154 (231)
T ss_pred -C---CCCCccEEEEecccccCCCHHHHHHHHHHHcCcC--------eEEEEEECCC
Confidence 1 24689999997542 1357888899999886 4666666543
No 78
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.00 E-value=5.1e-09 Score=102.47 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=75.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
++.+|||+|||+|.+++.+|++|.+|+|+|+++.+++.++++++.+++. +.+..+|..... ....||.|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~-------~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA-------LNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc-------ccCCCCEEEE
Confidence 4679999999999999999999999999999999999999999999885 777788875431 1347999998
Q ss_pred CCCcc------hHHHHHHHHHHhcCC
Q 007525 506 NLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP~~------a~eFLdaa~~lLk~~ 525 (600)
+.+.. ...++..+.++|+++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCC
Confidence 75532 246888999999986
No 79
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=5e-09 Score=106.57 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=92.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|+.|||++||+|-+++.+++.. ++|+++|+|+.|++.+++-+..-++.+ |+++.+||.+.. + ++.+||
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP---f---~D~sFD 121 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP---F---PDNSFD 121 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC---C---CCCccC
Confidence 3479999999999999999999975 699999999999999999999888887 999999999875 2 468999
Q ss_pred EEEeC-----CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 502 QVVMN-----LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 502 ~VVmN-----pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+|.|. .| .....|.++.|+++++ |.+-|-+|.+-..
T Consensus 122 ~vt~~fglrnv~-d~~~aL~E~~RVlKpg--------G~~~vle~~~p~~ 162 (238)
T COG2226 122 AVTISFGLRNVT-DIDKALKEMYRVLKPG--------GRLLVLEFSKPDN 162 (238)
T ss_pred EEEeeehhhcCC-CHHHHHHHHHHhhcCC--------eEEEEEEcCCCCc
Confidence 99984 33 2467899999999997 5888888887544
No 80
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.97 E-value=6e-09 Score=113.61 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|++|||+|||.|++++.+|+. + ++|+|+|+++.+++.+++|++.+|+...+++..+|+...... . ....||
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~---~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-A---ENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-c---cccccC
Confidence 567999999999999999999985 3 699999999999999999999999974455577777543210 0 135799
Q ss_pred EEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
+|++|+|.++ .++|+.+.++++++
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999763 35788889999886
No 81
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=4.5e-09 Score=114.70 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|++|||+|||+|..++.+++.+ .+|+|+|+++.+++.+++|++.+|+. ++++++|+.+.... . ...+||
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~-~---~~~~fD 315 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQW-W---DGQPFD 315 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhh-c---ccCCCC
Confidence 5689999999999999999999864 59999999999999999999999985 68999999864321 1 135799
Q ss_pred EEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
.|++|||.++ .++|..+..+++++
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999753 15788888888886
No 82
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.97 E-value=5.9e-09 Score=107.92 Aligned_cols=98 Identities=21% Similarity=0.215 Sum_probs=74.8
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.+++. +++|++|||+|||.|.+++.+|++ |++|+++.++++.++++++.++..|+.+++++.++|.+++.
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-------
Confidence 44544 789999999999999999999998 99999999999999999999999999999999999998753
Q ss_pred cCCcccEEEe-CC-----CcchHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVM-NL-----PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVm-Np-----P~~a~eFLdaa~~lLk~~ 525 (600)
.+||+||. .. +..-..|+..+.++|+++
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred --CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 37999885 11 122357899999999987
No 83
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.96 E-value=2.2e-09 Score=108.56 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=79.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||++||+|-+++.+++. + ++|+++|+++.+++.+++.++..+..+ |+++++|+.+..- ++++|
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~lp~------~d~sf 117 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDLPF------PDNSF 117 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB--S-------TT-E
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHhcC------CCCce
Confidence 568999999999999999999985 3 599999999999999999999988874 9999999988642 25789
Q ss_pred cEEEe-----CCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 501 TQVVM-----NLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 501 D~VVm-----NpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
|.|+| |.|. ....|.++.++|+++ |++-|.+|++...
T Consensus 118 D~v~~~fglrn~~d-~~~~l~E~~RVLkPG--------G~l~ile~~~p~~ 159 (233)
T PF01209_consen 118 DAVTCSFGLRNFPD-RERALREMYRVLKPG--------GRLVILEFSKPRN 159 (233)
T ss_dssp EEEEEES-GGG-SS-HHHHHHHHHHHEEEE--------EEEEEEEEEB-SS
T ss_pred eEEEHHhhHHhhCC-HHHHHHHHHHHcCCC--------eEEEEeeccCCCC
Confidence 99997 4443 356899999999997 6899999988654
No 84
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.94 E-value=4.3e-09 Score=100.30 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.+++.|||+|||.|.++..+++++++|+|+|+++.+++.+++|+.. .. +++++++|+.++.. ....+|.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~-~v~ii~~D~~~~~~------~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--AD-NLTVIHGDALKFDL------PKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CC-CEEEEECchhcCCc------cccCCCEE
Confidence 45788999999999999999999988999999999999999999854 23 59999999988742 12358999
Q ss_pred EeCCCcch-HHHHHHH
Q 007525 504 VMNLPNDA-TEFLDAF 518 (600)
Q Consensus 504 VmNpP~~a-~eFLdaa 518 (600)
+.|||+.. .+.+..+
T Consensus 82 i~n~Py~~~~~~i~~~ 97 (169)
T smart00650 82 VGNLPYNISTPILFKL 97 (169)
T ss_pred EECCCcccHHHHHHHH
Confidence 99999964 2344443
No 85
>PLN02244 tocopherol O-methyltransferase
Probab=98.94 E-value=5.8e-09 Score=110.63 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=87.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.++++|||+|||+|.+++.++++ +++|+|+|+++.+++.++++++.+++.++++++++|+.+.. + +.+.||.|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~---~---~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP---F---EDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---C---CCCCccEE
Confidence 56889999999999999999986 78999999999999999999999999777999999997642 1 24689999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.--. ....++.++.++++++ |++.+.+|..
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpG--------G~lvi~~~~~ 226 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPG--------GRIIIVTWCH 226 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCC--------cEEEEEEecc
Confidence 975321 2357899999999987 5777766654
No 86
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.92 E-value=1.3e-08 Score=99.77 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=83.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|++++|+|||+|..++.+|.. .++|||+|-++++++..++|++..+++| ++++.+||-+.+.. ...+|
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~------~~~~d 104 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPD------LPSPD 104 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcC------CCCCC
Confidence 779999999999999999999954 4699999999999999999999999886 99999999998853 22799
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+|+++==....+.|+.+...|+++
T Consensus 105 aiFIGGg~~i~~ile~~~~~l~~g 128 (187)
T COG2242 105 AIFIGGGGNIEEILEAAWERLKPG 128 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHcCcC
Confidence 999976555668889999988886
No 87
>PLN02672 methionine S-methyltransferase
Probab=98.92 E-value=4.9e-09 Score=124.97 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=85.3
Q ss_pred ccEEEEEecCeeeecChhHHHH--HHHHhcCC----CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATER--QRLLSGFN----FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERN 467 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr--~Riv~~l~----~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eN 467 (600)
.|+.|.++++- +.||-.+|. +. ++... ++.+|+|+|||+|.+++.+|++. .+|+|+|+||+|++.+++|
T Consensus 85 ~~l~~~V~p~V--LIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 85 KKLTMMEIPSI--FIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred cCCceeeCCCc--ccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 78889998874 458877776 22 32221 34689999999999999999863 6999999999999999999
Q ss_pred HHHcCCC---------------CcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 468 SVLNKLE---------------KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 468 aklNgl~---------------nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
+++|+++ ++++++++|..+.+.. ...+||+||.|||+-.
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~-----~~~~fDlIVSNPPYI~ 215 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD-----NNIELDRIVGCIPQIL 215 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccc-----cCCceEEEEECCCcCC
Confidence 9998653 4699999999876531 1236999999999853
No 88
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.90 E-value=1.5e-08 Score=107.31 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=79.4
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.+|.+|||+|||.|.++.++|+.|++|+|+|+++++++.+++++..+++..+++++++|+.++.. ..++||.|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence 35779999999999999999999999999999999999999998888775569999999987642 146899999
Q ss_pred eCCC----cchHHHHHHHHHHhcCC
Q 007525 505 MNLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP----~~a~eFLdaa~~lLk~~ 525 (600)
+.-. .....|+.++.++++++
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCC
Confidence 7321 12357999999999987
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.90 E-value=1.2e-08 Score=110.36 Aligned_cols=95 Identities=14% Similarity=0.284 Sum_probs=83.0
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+..+||+|||.|.+++.+|++ ...++|+|+++.+++.+.+++..+++.| +.++++|+..++.. + +.+.+|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~-~---~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLEL-L---PSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhh-C---CCCceeEE
Confidence 4679999999999999999987 4699999999999999999999999987 99999999987643 3 35789999
Q ss_pred EeCCCcc----------hHHHHHHHHHHhcCC
Q 007525 504 VMNLPND----------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~----------a~eFLdaa~~lLk~~ 525 (600)
+++.|.. ...|+..+.++|+++
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 9988752 257999999999986
No 90
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.4e-08 Score=109.09 Aligned_cols=143 Identities=19% Similarity=0.218 Sum_probs=100.4
Q ss_pred EEEEeccEEEEEecCe---------eeecChhHHHH--HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCC--------
Q 007525 391 TMLLFHHLSLFRCFDT---------IYWNSKLATER--QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVK-------- 449 (600)
Q Consensus 391 t~vkEnG~~F~vD~~k---------fy~n~Rl~tEr--~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~-------- 449 (600)
+.+.++.+...+|.+. +|.-+--..|. .-|+.. ..+++.++|.+||+|+|.|.||..+.
T Consensus 143 v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R 222 (381)
T COG0116 143 VELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNR 222 (381)
T ss_pred EEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCcccc
Confidence 4455566677777664 33333323344 222222 55778999999999999999998763
Q ss_pred ---------------------------------EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 450 ---------------------------------RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 450 ---------------------------------~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
..+|+|+++.+++.|+.|++..|+.+.|++.++|+..+-..
T Consensus 223 ~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------ 296 (381)
T COG0116 223 RFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------ 296 (381)
T ss_pred ccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------
Confidence 37799999999999999999999999999999999887531
Q ss_pred CCcccEEEeCCCcch-------HH-HHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 497 AHKITQVVMNLPNDA-------TE-FLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a-------~e-FLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
.+.+|+||+|||+.- .+ ....+.+.++.. +..-..|.|+..++
T Consensus 297 ~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~-------~~~ws~~v~tt~e~ 347 (381)
T COG0116 297 LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL-------LAGWSRYVFTTSED 347 (381)
T ss_pred CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH-------hcCCceEEEEccHH
Confidence 257899999999952 22 334444444432 12236688877654
No 91
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=5e-09 Score=107.77 Aligned_cols=119 Identities=21% Similarity=0.188 Sum_probs=86.2
Q ss_pred eeEEEecCCceEEEEEeccEEEEEecCeeeecChhHHHH--HHHHhc-----CCCCCeEEEEeeechHHHHHHhhC--CC
Q 007525 379 QLEVLAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATER--QRLLSG-----FNFKDVVCDVFAGVGPICIPAAKI--VK 449 (600)
Q Consensus 379 ~~evLaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr--~Riv~~-----l~~ge~VLDlfAGvG~FaIpaAkk--g~ 449 (600)
.+.+|-|+.+. .++.....++ | +.+|-.||- +++++. ...+..+||+|||+|.+++.++.. .+
T Consensus 102 PlQYIlg~~~F------~~l~l~~~pg-V-lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~ 173 (328)
T KOG2904|consen 102 PLQYILGSQPF------GDLDLVCKPG-V-LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQC 173 (328)
T ss_pred ChhheeccCcc------CCceEEecCC-e-eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCc
Confidence 34445565442 2333333333 2 457888876 445543 235678999999999999999985 47
Q ss_pred EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChH----HHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 450 RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR----RFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 450 ~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDar----e~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
.|+|+|.++.|+..+.+|+.++++.+++.+++-+.. +-.. + ..++.|.++.|||+-
T Consensus 174 ~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l----~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 174 TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-L----LEGKIDLLVSNPPYI 233 (328)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-c----ccCceeEEecCCCcc
Confidence 999999999999999999999999999999865433 2211 1 247899999999983
No 92
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.88 E-value=9.9e-09 Score=107.32 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=72.7
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. +.+++.|+|+|||.|.++..+++.+.+|+|+|+++.+++.+++|+..++..++++++++|+.+.-
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-------- 98 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-------- 98 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--------
Confidence 44443 66889999999999999999999988999999999999999999998876556999999997752
Q ss_pred CCcccEEEeCCCcc
Q 007525 497 AHKITQVVMNLPND 510 (600)
Q Consensus 497 ~~~fD~VVmNpP~~ 510 (600)
...+|.||.|+|+.
T Consensus 99 ~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 FPYFDVCVANVPYQ 112 (294)
T ss_pred ccccCEEEecCCcc
Confidence 23589999999996
No 93
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.87 E-value=7.5e-09 Score=111.69 Aligned_cols=116 Identities=28% Similarity=0.339 Sum_probs=86.7
Q ss_pred CeeeecChhHHHHHHHH------hc----CCCCCeEEEEeeechHHHHHHhhC--C-CEEEEEeCcHHHHHHHHHHHHHc
Q 007525 405 DTIYWNSKLATERQRLL------SG----FNFKDVVCDVFAGVGPICIPAAKI--V-KRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 405 ~kfy~n~Rl~tEr~Riv------~~----l~~ge~VLDlfAGvG~FaIpaAkk--g-~~V~AvDiNP~Ave~l~eNaklN 471 (600)
..+|+|+...-.|...+ +. ..++-+|||.+||+|-=||.+|+. + .+|++||+||+|++.+++|+++|
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 45899999888774222 11 123458999999999999999987 3 59999999999999999999999
Q ss_pred CCCC-cEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 472 KLEK-KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 472 gl~n-rV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
++++ ++++.++||..++.. ....||+|=+||-.+...||+++.+..+.+
T Consensus 98 ~~~~~~~~v~~~DAn~ll~~-----~~~~fD~IDlDPfGSp~pfldsA~~~v~~g 147 (377)
T PF02005_consen 98 GLEDERIEVSNMDANVLLYS-----RQERFDVIDLDPFGSPAPFLDSALQAVKDG 147 (377)
T ss_dssp T-SGCCEEEEES-HHHHHCH-----STT-EEEEEE--SS--HHHHHHHHHHEEEE
T ss_pred cccCceEEEehhhHHHHhhh-----ccccCCEEEeCCCCCccHhHHHHHHHhhcC
Confidence 9987 799999999998741 257899999999888899999999999875
No 94
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.87 E-value=6.7e-09 Score=109.87 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEE-EcChHHHHHHHHHhhcCCccc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVF-NMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i-~gDare~l~~l~~~~~~~~fD 501 (600)
.+.+|||+|||+|.++..++.+ +.+++|+|+++.|++.+++|++.| ++.++|++. +.|..++...+.. ..+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~--~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH--KNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc--cCCceE
Confidence 4578999999999887776654 679999999999999999999999 899889886 4555554433211 246899
Q ss_pred EEEeCCCcch
Q 007525 502 QVVMNLPNDA 511 (600)
Q Consensus 502 ~VVmNpP~~a 511 (600)
+|++|||+..
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999999964
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=98.87 E-value=3.4e-08 Score=102.48 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=71.6
Q ss_pred CeeeecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc
Q 007525 405 DTIYWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482 (600)
Q Consensus 405 ~kfy~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g 482 (600)
...|+.|....... ++. ...+.+|||+|||+|.+++.++++ +.+|+++|+|+.+++.+++|. . +++++++
T Consensus 45 ~G~FfTP~~i~~~f-~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~ 116 (279)
T PHA03411 45 SGAFFTPEGLAWDF-TID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----P-EAEWITS 116 (279)
T ss_pred ceeEcCCHHHHHHH-Hhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----c-CCEEEEC
Confidence 45678887665432 222 334578999999999999999875 469999999999999999874 2 3889999
Q ss_pred ChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 483 DGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 483 Dare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
|++++.. ..+||.||+|||+.
T Consensus 117 D~~e~~~-------~~kFDlIIsNPPF~ 137 (279)
T PHA03411 117 DVFEFES-------NEKFDVVISNPPFG 137 (279)
T ss_pred chhhhcc-------cCCCcEEEEcCCcc
Confidence 9988752 35799999999985
No 96
>PHA03412 putative methyltransferase; Provisional
Probab=98.87 E-value=1.2e-08 Score=103.66 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=101.1
Q ss_pred eecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc
Q 007525 408 YWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI-----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 482 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk-----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g 482 (600)
|+.|...+.+. ++... .+.+|||+|||+|.+++.++++ ...|+|+|+|+.|++.+++|+. ++.++++
T Consensus 33 FfTP~~iAr~~-~i~~~-~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~ 104 (241)
T PHA03412 33 FFTPIGLARDF-TIDAC-TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINA 104 (241)
T ss_pred cCCCHHHHHHH-HHhcc-CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEc
Confidence 55565443322 22223 4679999999999999999874 3589999999999999998852 2789999
Q ss_pred ChHHHHHHHHHhhcCCcccEEEeCCCcch----------------HHHHHHHHHHhcCCCCC---CCCCcc--EEEEEec
Q 007525 483 DGRRFIDAMFASQKAHKITQVVMNLPNDA----------------TEFLDAFRGIYRDRPED---AKFTFP--KIHLYGF 541 (600)
Q Consensus 483 Dare~l~~l~~~~~~~~fD~VVmNpP~~a----------------~eFLdaa~~lLk~~~~~---g~~~~p--~IHvY~F 541 (600)
|+.... ...+||+||+|||+.. ..++..+.++++++..- ....+. --|.|..
T Consensus 105 D~~~~~-------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~ 177 (241)
T PHA03412 105 DALTTE-------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQ 177 (241)
T ss_pred chhccc-------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceee
Confidence 987642 1357999999999851 24677777766654100 000011 1233332
Q ss_pred cCCCCCchhHHHHHHHHHhhc---c----cceEEEEeEEecCCCcEEEEEEEecc
Q 007525 542 SKARDPEFDFHERIRIALVEV---A----VNVEMRRVRLVAPGKWMLCASFVLPE 589 (600)
Q Consensus 542 ~k~~d~~~di~eRI~~~L~~~---~----~~~~v~~VR~VAP~K~mycvsFrlp~ 589 (600)
..... +.-..+..++-+-. . ..+-...-+.|+|--..+|++|.=+.
T Consensus 178 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PHA03412 178 DESTT--SSKCKKFLDETGLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNEPE 230 (241)
T ss_pred ccCcc--cHHHHHHHHhcCeeecCCCCccceeehhhccCCCccceEEEEeecCcC
Confidence 32221 11121222211110 0 11223346789999999999998765
No 97
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=1.5e-08 Score=100.68 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=76.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|||+|||+|+++..+++. + ++|+++|+++++++.+++|++.+++.+ ++++++|+.+... ....|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~~~~------~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTLGYE------ENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCC------cCCCc
Confidence 678999999999999999998876 2 599999999999999999999999875 9999999876432 13579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+++-- ..+....+.+.|+++
T Consensus 147 D~I~~~~~--~~~~~~~l~~~Lkpg 169 (212)
T PRK13942 147 DRIYVTAA--GPDIPKPLIEQLKDG 169 (212)
T ss_pred CEEEECCC--cccchHHHHHhhCCC
Confidence 99998742 234456677788876
No 98
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.83 E-value=3.4e-08 Score=99.99 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=82.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+.++.+|||+|||+|..++.+++. +++|+|+|+++.+++.+++|+..++..++++++++|+.+.. ...
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~ 125 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IEN 125 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCC
Confidence 568899999999999999988862 57999999999999999999999988777999999987652 235
Q ss_pred ccEEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 500 ITQVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 500 fD~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+|.|+++... ....++..+.++|+++ |.+-+.+
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpG--------G~l~l~e 164 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPG--------GALVLSE 164 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCC--------CEEEEEE
Confidence 8999987532 1246788999999886 4565555
No 99
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.83 E-value=7.1e-09 Score=103.83 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=83.5
Q ss_pred CeeeecC-hhHHHH--HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE
Q 007525 405 DTIYWNS-KLATER--QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481 (600)
Q Consensus 405 ~kfy~n~-Rl~tEr--~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~ 481 (600)
...||.+ .-.+|+ .++...+ ..++|+|.|||+|+-+|..|.+++.|+|+|++|.-+.++++|++.-|+.++|++++
T Consensus 71 e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 71 EGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred cceEEeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 3344443 334444 2333333 67899999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhcCCcccEEEeCCCcchHH
Q 007525 482 MDGRRFIDAMFASQKAHKITQVVMNLPNDATE 513 (600)
Q Consensus 482 gDare~l~~l~~~~~~~~fD~VVmNpP~~a~e 513 (600)
||..+....+... ...+|.|.+-||-+...
T Consensus 150 GD~ld~~~~lq~~--K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 150 GDFLDLASKLKAD--KIKYDCVFLSPPWGGPS 179 (263)
T ss_pred chHHHHHHHHhhh--hheeeeeecCCCCCCcc
Confidence 9999987655432 23478999999876443
No 100
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.82 E-value=5.2e-08 Score=99.27 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|||+|||.|..++.+++. + .+|+++|+++.+++.+++|++.+++.+ ++++.+|+.+.. + +.+.|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~---~---~~~~f 147 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALP---V---ADNSV 147 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCC---C---CCCce
Confidence 678999999999999998887764 3 489999999999999999999999874 999999986642 1 24579
Q ss_pred cEEEeCCC----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 501 TQVVMNLP----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 501 D~VVmNpP----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|.|+.+.- ......+..+.++|+++ |++.+.++...
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpG--------G~l~i~~~~~~ 187 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKPG--------GRFAISDVVLR 187 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCCC--------cEEEEEEeecc
Confidence 99997742 23457899999999986 57888776543
No 101
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.8e-08 Score=101.52 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=90.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+|+|.|+|.++..+|.. | ++|+..|+.++.++.|++|++.-++.|+|+...+|+.+.+. ...|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v 164 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV 164 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence 789999999999999999999973 3 59999999999999999999999999889999999998864 3479
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|+|++|.|. ..++++.+..+|+++ +++-||+
T Consensus 165 Dav~LDmp~-PW~~le~~~~~Lkpg--------g~~~~y~ 195 (256)
T COG2519 165 DAVFLDLPD-PWNVLEHVSDALKPG--------GVVVVYS 195 (256)
T ss_pred CEEEEcCCC-hHHHHHHHHHHhCCC--------cEEEEEc
Confidence 999999998 689999999999987 4666664
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.81 E-value=4.2e-08 Score=96.59 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.++.+|||+|||+|+++..+++.+.+|+++|+++++++.+++|++.+++.+ +++.++|+.+... ....||.|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~------~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWP------AYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCC------cCCCcCEE
Confidence 5678999999999999999888877799999999999999999999999986 9999999865432 13579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+++.+.. ...+.+...|+++
T Consensus 149 ~~~~~~~--~~~~~l~~~L~~g 168 (212)
T PRK00312 149 LVTAAAP--EIPRALLEQLKEG 168 (212)
T ss_pred EEccCch--hhhHHHHHhcCCC
Confidence 9987543 3456677778775
No 103
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.81 E-value=1.9e-08 Score=102.05 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=78.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
+|.+|||+|||.|.++.++|+.|+.|+|+|+++.+++.++.-+..+++. +...+..+.+.... .++||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~------~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA------GGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc------CCCccEEEE
Confidence 6889999999999999999999999999999999999999999999996 67777777776532 478999986
Q ss_pred CC----CcchHHHHHHHHHHhcCC
Q 007525 506 NL----PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 Np----P~~a~eFLdaa~~lLk~~ 525 (600)
.= -.....|+.+..++++++
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCC
Confidence 31 223457999999999986
No 104
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.81 E-value=1.1e-08 Score=108.64 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=82.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l~~l~~~~~~~~fD~ 502 (600)
+++|+.|+|.|||||+|.|.|.-.|++|+|+|++..+++-++.|.+.-++++ ..++.+ ||.... + ...++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lp---l---~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLP---L---RDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCC---C---CCCccce
Confidence 8899999999999999999999999999999999999999999999999987 666766 998764 2 1346999
Q ss_pred EEeCCCcch-------------HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-------------~eFLdaa~~lLk~~ 525 (600)
|+.|||+.. .++++.+...++++
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 999999841 26888889999875
No 105
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.79 E-value=3.9e-08 Score=100.70 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=84.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHH--cCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVL--NKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNakl--Ngl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
+.++++|||+|||+|.+++.++++ + ++|+|+|+++++++.+++++.. ++...+++++++|+.++. + +.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~---~~~ 144 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---F---DDC 144 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---C---CCC
Confidence 567899999999999999999875 3 5999999999999999987642 222235999999997753 1 246
Q ss_pred cccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 499 KITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 499 ~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+||.|+++.-- ....++.++.++|+++ |.+.+-+|.+.+
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG--------G~l~i~d~~~~~ 187 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPG--------SRVSILDFNKST 187 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcC--------cEEEEEECCCCC
Confidence 89999985321 2457899999999987 588888888754
No 106
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=8.7e-08 Score=99.69 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=86.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+++|++|||+|||.|.+++.||++ |++|+|+++|++.++.+++.++..|++++|++...|-+++- +.||.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---------e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---------EPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---------cccce
Confidence 789999999999999999999998 89999999999999999999999999988999999999874 45999
Q ss_pred EEe-CCC-----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 503 VVM-NLP-----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 503 VVm-NpP-----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
||. .-- ..-..|+..+.++|+++ |.+-.|++...
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~--------G~~llh~I~~~ 180 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPG--------GRMLLHSITGP 180 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCC--------ceEEEEEecCC
Confidence 985 111 11346888888888876 45556666543
No 107
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.79 E-value=2.7e-08 Score=114.99 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--------------------------------------------CEEEEEeCcHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--------------------------------------------KRVYANDLNPYA 460 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--------------------------------------------~~V~AvDiNP~A 460 (600)
.+++.++|.|||+|+|.|.||..+ .+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 568999999999999999998631 269999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 461 VDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 461 ve~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
++.+++|++.+|+.+.+++.++|+.++.... ..+.+|.||+|||+.
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPYg 314 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCCc
Confidence 9999999999999888999999998864210 124699999999984
No 108
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.78 E-value=4.6e-08 Score=97.45 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=86.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+...||++|+|+|+-++.+|+. +++|+++|+||+.++.+++|++..|+.++|+++.+|+.+++..+......+.|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 346679999999999999999974 57999999999999999999999999989999999999999887654223589
Q ss_pred cEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
|.|++|-... -..+++.+.++++++
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEEEE
T ss_pred eEEEEcccccchhhHHHHHhhhccCC
Confidence 9999998664 357888899999876
No 109
>PRK04457 spermidine synthase; Provisional
Probab=98.77 E-value=6.3e-08 Score=99.48 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+...|||+|||.|.++..+++. +.+|+++|++|++++.++++...++...+++++.+|+++++... ..+||
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-----~~~yD 138 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-----RHSTD 138 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-----CCCCC
Confidence 345688999999999999988875 46999999999999999999887766557999999999998642 35799
Q ss_pred EEEeCCCcc--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPND--------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~~--------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++|.... ..+|+..+.+.|+++ |++-+..|..
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg--------Gvlvin~~~~ 180 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSD--------GIFVVNLWSR 180 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCC--------cEEEEEcCCC
Confidence 999985321 268999999999986 4666655544
No 110
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.75 E-value=3.3e-08 Score=101.01 Aligned_cols=82 Identities=26% Similarity=0.369 Sum_probs=68.7
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. +.++++|+|+|||.|.+++.+++++.+|+|+|+++.+++.+++++.. .. +++++++|+.++.
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~-~v~ii~~D~~~~~-------- 88 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AG-NVEIIEGDALKVD-------- 88 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CC-CEEEEEeccccCC--------
Confidence 44443 56789999999999999999999988999999999999999998854 33 5999999998752
Q ss_pred CCcccEEEeCCCcch
Q 007525 497 AHKITQVVMNLPNDA 511 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a 511 (600)
...+|.|++|||+..
T Consensus 89 ~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 LPEFNKVVSNLPYQI 103 (258)
T ss_pred chhceEEEEcCCccc
Confidence 124799999999963
No 111
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.74 E-value=8.1e-08 Score=94.88 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=72.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..++..+++++.++|+.+.. .+||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---------GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---------CCcCEEE
Confidence 4689999999999999999999888999999999999999999999888656999999987642 4699888
Q ss_pred eC------CCcchHHHHHHHHHHhc
Q 007525 505 MN------LPNDATEFLDAFRGIYR 523 (600)
Q Consensus 505 mN------pP~~a~eFLdaa~~lLk 523 (600)
+. ++......+..+.++++
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~ 149 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTK 149 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhC
Confidence 63 12222345566655554
No 112
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.72 E-value=9.3e-08 Score=95.55 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC--------------CCcEEEEEcChHHHHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL--------------EKKIEVFNMDGRRFIDA 490 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl--------------~nrV~~i~gDare~l~~ 490 (600)
.++.+|||+|||.|..++.+|.+|..|+|+|++|.|++.+.. .+++ ..+|+++++|..++-..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 577899999999999999999999999999999999998643 2222 12488999999876321
Q ss_pred HHHhhcCCcccEEE-----eCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 491 MFASQKAHKITQVV-----MNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 491 l~~~~~~~~fD~VV-----mNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
..+.||.|+ +-.|.. -..++..+.++++++ |++++.+|..
T Consensus 110 -----~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg--------G~~ll~~~~~ 155 (213)
T TIGR03840 110 -----DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG--------ARQLLITLDY 155 (213)
T ss_pred -----cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC--------CeEEEEEEEc
Confidence 023466443 334433 346899999999987 5778887765
No 113
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.70 E-value=5.6e-08 Score=97.45 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC--------------CCcEEEEEcChHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL--------------EKKIEVFNMDGRRFID 489 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl--------------~nrV~~i~gDare~l~ 489 (600)
+.++.+|||++||.|..++.+|.+|+.|+|+|+++.|++.+.. .+++ ..+|+++++|+.++..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 3567899999999999999999999999999999999998642 3332 2358999999988742
Q ss_pred HHHHhhcCCcccEEE-----eCCCc-chHHHHHHHHHHhcCC
Q 007525 490 AMFASQKAHKITQVV-----MNLPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 490 ~l~~~~~~~~fD~VV-----mNpP~-~a~eFLdaa~~lLk~~ 525 (600)
. ....||.|+ +-+|. .-..++..+.++|+++
T Consensus 112 ~-----~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 112 A-----DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred c-----cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 1 124677766 33443 3457899999999987
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.70 E-value=1.6e-07 Score=99.56 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=75.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
++++++|||+|||+|.+++.+|+.. ..|+++|+++++++.+++|++.+++++ +.++++|+.+.+.. ...|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~------~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPE------FAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccc------cCCc
Confidence 5688999999999999999999853 379999999999999999999999975 99999998765432 2469
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+++.. .....+.+.+.++++
T Consensus 151 D~Ii~~~g--~~~ip~~~~~~Lkpg 173 (322)
T PRK13943 151 DVIFVTVG--VDEVPETWFTQLKEG 173 (322)
T ss_pred cEEEECCc--hHHhHHHHHHhcCCC
Confidence 99999742 223445566777765
No 115
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.69 E-value=7.9e-08 Score=98.55 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=88.8
Q ss_pred eecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcCh
Q 007525 408 YWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG 484 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDa 484 (600)
|+.++-...-..+++. +.++.+|||+|||+|..+..+++. +++|+|+|+++.+++.+++++.. .+++.+.++|+
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~ 108 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDI 108 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCc
Confidence 4555534334556654 578899999999999999999875 67999999999999999998654 23599999998
Q ss_pred HHHHHHHHHhhcCCcccEEEeCC-----C-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 485 RRFIDAMFASQKAHKITQVVMNL-----P-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 485 re~l~~l~~~~~~~~fD~VVmNp-----P-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+.. + +.++||+|++.. + .....++..+.++|+++ |++-+.++...
T Consensus 109 ~~~~---~---~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG--------G~lvi~d~~~~ 160 (263)
T PTZ00098 109 LKKD---F---PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN--------GILLITDYCAD 160 (263)
T ss_pred ccCC---C---CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEeccc
Confidence 6431 1 246899999842 2 13457889999999987 46666666543
No 116
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.69 E-value=1.4e-07 Score=94.44 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=82.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+.++.+|||+|||+|.+++.++++ +++|+++|+++.+++.++++++..+...+++++++|+.++. ...
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~ 122 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKN 122 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCC
Confidence 467889999999999999999874 57999999999999999999988776556999999998753 235
Q ss_pred ccEEEeCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+|.|+++..- ....++..+.+.|+++ |.+-+.+...
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg--------G~l~i~d~~~ 164 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPN--------GVLVLSEKFR 164 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCC--------eEEEEeeccc
Confidence 7888876431 2357889999999886 4666665443
No 117
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.69 E-value=7e-08 Score=98.80 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=76.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH-HHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR-FIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare-~l~~l~~~~~~~~ 499 (600)
+.+|++|++.|.|+|.+++.+|+. | ++|+..|.+++-++.|++|++.+++.++|++.+.|+.+ .... +....
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~----~~~~~ 113 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE----ELESD 113 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST----T-TTS
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc----cccCc
Confidence 789999999999999999999985 3 59999999999999999999999998789999999863 2211 11357
Q ss_pred ccEEEeCCCcchHHHHHHHHHHh-cCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIY-RDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lL-k~~ 525 (600)
+|.|++|+|. ..+.++.+.++| +++
T Consensus 114 ~DavfLDlp~-Pw~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 114 FDAVFLDLPD-PWEAIPHAKRALKKPG 139 (247)
T ss_dssp EEEEEEESSS-GGGGHHHHHHHE-EEE
T ss_pred ccEEEEeCCC-HHHHHHHHHHHHhcCC
Confidence 9999999998 467788899999 554
No 118
>PRK10742 putative methyltransferase; Provisional
Probab=98.68 E-value=8.5e-08 Score=98.10 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=74.3
Q ss_pred HHHhc--CCCCC--eEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc------C--CCCcEEEEEcChHH
Q 007525 419 RLLSG--FNFKD--VVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN------K--LEKKIEVFNMDGRR 486 (600)
Q Consensus 419 Riv~~--l~~ge--~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN------g--l~nrV~~i~gDare 486 (600)
.+++. +++|. +|||++||.|.-|+.+|..|++|+++|-||.+...+++|++.. + +..+++++++|+.+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 44444 46777 8999999999999999999999999999999999999999984 2 22469999999999
Q ss_pred HHHHHHHhhcCCcccEEEeCCCcc
Q 007525 487 FIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 487 ~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
++... ...||+|.+|||+.
T Consensus 157 ~L~~~-----~~~fDVVYlDPMfp 175 (250)
T PRK10742 157 ALTDI-----TPRPQVVYLDPMFP 175 (250)
T ss_pred HHhhC-----CCCCcEEEECCCCC
Confidence 99752 34799999999984
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.67 E-value=2.9e-07 Score=101.20 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
..+++. +.++.+|||+|||+|.+++.+|+. +++|+|+|+++.+++.+++|+. +...++++.++|+.+.. +
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~---~-- 328 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT---Y-- 328 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC---C--
Confidence 445543 467889999999999999999986 6799999999999999999986 44446999999987642 1
Q ss_pred hcCCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 495 QKAHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+.++||.|++.--. ....++..+.++++++ |++-+.++...
T Consensus 329 -~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg--------G~l~i~~~~~~ 373 (475)
T PLN02336 329 -PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG--------GKVLISDYCRS 373 (475)
T ss_pred -CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCC--------eEEEEEEeccC
Confidence 24579999985221 2357899999999986 46666666553
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.67 E-value=7.2e-07 Score=92.66 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=78.3
Q ss_pred CCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHc--CC--CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLN--KL--EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklN--gl--~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
...++||++|||.|.++..+++. + .+|+++|+++.+++.++++.... +. +.+++++.+|+++++.. ..+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-----~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-----TEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-----CCC
Confidence 45689999999999999999987 4 59999999999999999998643 22 34799999999999864 246
Q ss_pred cccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
+||+|++|.+. ...+|+..+.+.|+++
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 89999998532 1357888888999876
No 121
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.67 E-value=2.8e-07 Score=75.80 Aligned_cols=91 Identities=19% Similarity=0.309 Sum_probs=74.1
Q ss_pred eEEEEeeechHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
+|+|+|||.|.++..+++ .+.+++++|+++.++..++++...++.. ++.++.+|..+.... ....+|.|++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPE-----ADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccc-----cCCceEEEEEcc
Confidence 489999999999999998 4579999999999999999766555554 499999999887531 145799999999
Q ss_pred Ccch-----HHHHHHHHHHhcCC
Q 007525 508 PNDA-----TEFLDAFRGIYRDR 525 (600)
Q Consensus 508 P~~a-----~eFLdaa~~lLk~~ 525 (600)
+... ..++..+...++++
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCC
Confidence 8765 56778888888765
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.65 E-value=2.5e-07 Score=92.04 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=74.2
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcC
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKA 497 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~ 497 (600)
.+++|..|||+|||+|.++..++++. +.|+|+|+++ .+.+.+ ++++++|+.+. +..+...-..
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~~-v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIVG-VDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCCC-cEEEecCCCChHHHHHHHHHhCC
Confidence 36789999999999999999998863 5899999999 134554 89999998874 2332221124
Q ss_pred CcccEEEeCC-Ccch--------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 498 HKITQVVMNL-PNDA--------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 498 ~~fD~VVmNp-P~~a--------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
..+|.|++|+ |... ...|..+.++|+++ |++-+-.|...
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG--------G~~vi~~~~~~ 169 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG--------GSFVVKVFQGE 169 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC--------CEEEEEEecCc
Confidence 6799999886 3210 34678888999886 46666667653
No 123
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.65 E-value=1e-07 Score=98.25 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=68.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.+++.|||+|||+|.++..+++++.+|+|+|+++.+++.+++|+.. .+++++++|+.++-.. ...++.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~------~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS------ELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH------HcCcceE
Confidence 56789999999999999999999988999999999999999988742 3599999999876311 1115899
Q ss_pred EeCCCcch-HHHHHHH
Q 007525 504 VMNLPNDA-TEFLDAF 518 (600)
Q Consensus 504 VmNpP~~a-~eFLdaa 518 (600)
|.|||+.. ..++..+
T Consensus 110 v~NlPY~iss~ii~~~ 125 (272)
T PRK00274 110 VANLPYNITTPLLFHL 125 (272)
T ss_pred EEeCCccchHHHHHHH
Confidence 99999864 3444443
No 124
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.63 E-value=2.9e-07 Score=93.23 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=73.2
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
.+++. ..++.+|||+|||+|.++..++++ +++|+|+|+++.+++.++++ +++++++|+.++.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~------ 85 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK------ 85 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC------
Confidence 34444 357899999999999999999987 57999999999999998763 2678999987653
Q ss_pred hcCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
....||.|+++... ....++..+.++|+++
T Consensus 86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCC
Confidence 13579999998643 2356788889999886
No 125
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.9e-08 Score=93.23 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.|..++|+|||.|-+++.++.-+ ..|+|+||+|+|++...+|++.-.+. +.+.++|..+... ..+.||.+|
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~------~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLEL------KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhc------cCCeEeeEE
Confidence 68999999999999998888765 58999999999999999999998885 6889999877653 247899999
Q ss_pred eCCCcch------HHHHHHHHHHhc
Q 007525 505 MNLPNDA------TEFLDAFRGIYR 523 (600)
Q Consensus 505 mNpP~~a------~eFLdaa~~lLk 523 (600)
+|||... .+|++++..+.+
T Consensus 120 iNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred ecCCCCcccccccHHHHHHHHHHHH
Confidence 9999864 378888887664
No 126
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.62 E-value=2e-07 Score=93.83 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=82.1
Q ss_pred HHHhcCC--CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFN--FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~--~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++.+. ++..|||+|||+|.++..+++.+++|+++|+|+.+++.++++.. .+.++++|+.+.. + .
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~---~---~ 100 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP---L---A 100 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc---C---C
Confidence 4445443 46799999999999999999889999999999999999988742 1457889987642 1 2
Q ss_pred CCcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 497 AHKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 497 ~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
...||.|+++.+. ....++..+.++++++ |.+.+-+|...
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g--------G~l~~~~~~~~ 144 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPG--------GVVAFTTLVQG 144 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCC--------eEEEEEeCCCC
Confidence 4579999998754 2347889999999986 57777777654
No 127
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.61 E-value=2.9e-07 Score=102.03 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=87.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|||+|||.|.=+..+|.. ...|+|+|+++.-++.+++|+++.|+.| |.+.+.|+..+.... ...|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~-----~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAAL-----PETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhc-----hhhc
Confidence 478999999999999999999875 2589999999999999999999999987 999999998764321 3569
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|.|++|.|.++ .+.|+.+..+++++ |+| ||.-+.
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG--------G~L-VYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG--------GTL-VYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC--------cEE-EEECCC
Confidence 99999999862 35788888888886 455 776665
No 128
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.61 E-value=3.9e-07 Score=94.82 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=83.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||+|.+++.++++. .+|+++|+ |.+++.+++|++..++.++++++.+|+.+.. ...+|
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--------~~~~D 217 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--------YPEAD 217 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--------CCCCC
Confidence 5678899999999999999999873 69999998 8999999999999999888999999987531 12368
Q ss_pred EEEeCC-----C-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNL-----P-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNp-----P-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.|++.- + ......+..+.+.++++ |++.++++.-
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pg--------G~l~i~d~~~ 257 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSG--------GRLLILDMVI 257 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCC--------CEEEEEEecc
Confidence 776532 2 22356888899999886 5888888754
No 129
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.60 E-value=1.1e-07 Score=82.84 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=68.6
Q ss_pred EEEEeeechHHHHHHhhCC-----CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 430 VCDVFAGVGPICIPAAKIV-----KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAkkg-----~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
|||+|||.|..+..+++.. .+++++|+++++++.++++....+. +++++++|+.++.. ..++||.|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence 7999999999999999763 7999999999999999999998777 48999999988532 256899999
Q ss_pred e-CC--Ccc----hHHHHHHHHHHhcCC
Q 007525 505 M-NL--PND----ATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 m-Np--P~~----a~eFLdaa~~lLk~~ 525 (600)
+ .. .+. ...+++.+.++++++
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 8 33 222 246777777777653
No 130
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.60 E-value=2.4e-07 Score=91.66 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=71.0
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.++.+ ++.++||++||.|.-|+.+|++|..|+|+|+|+.+++.+++-++.++++ |++...|..++. ....
T Consensus 25 a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~-------~~~~ 94 (192)
T PF03848_consen 25 AVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD-------FPEE 94 (192)
T ss_dssp HCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TTT
T ss_pred HHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc-------ccCC
Confidence 34444 4568999999999999999999999999999999999999999999997 999999987653 1357
Q ss_pred ccEEEeC-----CCc-chHHHHHHHHHHhcCC
Q 007525 500 ITQVVMN-----LPN-DATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmN-----pP~-~a~eFLdaa~~lLk~~ 525 (600)
+|.|+.. +++ .....++.+...++++
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 9998742 222 2345667777777765
No 131
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.58 E-value=4.2e-07 Score=91.70 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=72.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++.+|||+|||.|.++..+++. +++|+|+|+++.+++.++++. . ++.++.+|+.++. ...+||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~~~-------~~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P-DCQFVEADIASWQ-------PPQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhccC-------CCCCcc
Confidence 457899999999999999999986 479999999999999998874 3 3789999987653 135799
Q ss_pred EEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
.|+++... ....++..+.++|+++
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence 99998653 2347888899999886
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.57 E-value=2.7e-07 Score=91.14 Aligned_cols=101 Identities=16% Similarity=0.293 Sum_probs=83.8
Q ss_pred CCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
...+||+|||.|.|.+.+|+. ...++|+|+....+..+...+...++.| +.++++||..++..+++ .+++|.|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~---~~~v~~i~ 93 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFP---PGSVDRIY 93 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHST---TTSEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhccc---CCchheEE
Confidence 349999999999999999986 4699999999999999999999999997 99999999999887763 47899999
Q ss_pred eCCCc------------chHHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 007525 505 MNLPN------------DATEFLDAFRGIYRDRPEDAKFTFPKIHLY 539 (600)
Q Consensus 505 mNpP~------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY 539 (600)
++.|. ...+|++.+.++|+++ |.||+-
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g--------G~l~~~ 132 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPG--------GELYFA 132 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEE--------EEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCC--------CEEEEE
Confidence 98775 2358999999999986 567653
No 133
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.56 E-value=8.5e-07 Score=87.16 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=77.7
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
.+.+|||+|||+|.++..+++.+..|+++|+++.+++.+++|+..+++. ++.+.++|+.++... ...+||.|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-----~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK-----GAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC-----CCCCccEEEe
Confidence 4789999999999999999998889999999999999999999998875 388999998877532 1357999988
Q ss_pred CCC----cchHHHHHHHHHHhcCC
Q 007525 506 NLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP----~~a~eFLdaa~~lLk~~ 525 (600)
+-. .....++..+.++++++
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCC
Confidence 632 12356888888988876
No 134
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.55 E-value=4.8e-07 Score=89.16 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=80.1
Q ss_pred CeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 428 DVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
++|||+|||.|.+++.+++. +++|+++|+++++++.++++++.+++.++++++++|..+.. ..+.||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-------~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-------FPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-------CCCCCCEeeh
Confidence 36999999999999999986 36999999999999999999999999888999999985432 1347999986
Q ss_pred CC----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 506 NL----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 506 Np----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.- -.....++..+.++|+++ |++-+.++.
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~ 106 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDG--------GHLVLADFI 106 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCC--------CEEEEEEcc
Confidence 32 112357899999999986 466666553
No 135
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.54 E-value=1.2e-07 Score=79.29 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=67.1
Q ss_pred EEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC-
Q 007525 431 CDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP- 508 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP- 508 (600)
||+|||.|.++..++++ +..|+++|+++.+++.++++...++ +.+.++|+.++. + +.++||+|++.--
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~---~---~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLP---F---PDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSS---S----TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCc---c---ccccccccccccce
Confidence 79999999999999999 7899999999999999999876544 458999988873 1 2578999997532
Q ss_pred ---cchHHHHHHHHHHhcCC
Q 007525 509 ---NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 509 ---~~a~eFLdaa~~lLk~~ 525 (600)
.....++.++.++++++
T Consensus 71 ~~~~~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPG 90 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEE
T ss_pred eeccCHHHHHHHHHHHcCcC
Confidence 22357899999999986
No 136
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.52 E-value=7.9e-07 Score=96.23 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=77.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+++|++|||+|||+|.+++.+|+. |++|+|+|+++++++.++++++ ++ .+++..+|..+. .++||.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CCCCCE
Confidence 578999999999999999999986 7899999999999999999984 44 278888987653 257999
Q ss_pred EEeCCC------cchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 503 VVMNLP------NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 503 VVmNpP------~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|++... ..-..++..+.++|+++ |.+-++++.
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG--------G~lvl~~i~ 269 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPD--------GLFLLHTIG 269 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC--------cEEEEEEcc
Confidence 986532 11246889999999986 455555554
No 137
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.51 E-value=7.5e-07 Score=87.45 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=83.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|||+|||.|.+++.++..+ .+|+++|+++.+++.+++|+..+++.+++.++.+|+.+... ..+.|
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~ 122 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSF 122 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCc
Confidence 3467899999999999999999875 79999999999999999999888776679999999877531 24579
Q ss_pred cEEEeCCC----cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 501 TQVVMNLP----NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 501 D~VVmNpP----~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|.|+++.- .....++..+..+++++ |.+-+.++..
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~g--------G~li~~~~~~ 161 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPG--------GRLVILEFSK 161 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCC--------cEEEEEEecC
Confidence 99987431 12457888999999876 4555555543
No 138
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.51 E-value=7.4e-07 Score=87.77 Aligned_cols=73 Identities=23% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++..|||+|||+|.++..+++.+..|+++|+++.+++.+++++..+++.+++.+..+|... ..+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEEE
Confidence 46789999999999999999999889999999999999999999988886679999999321 135799998
Q ss_pred eC
Q 007525 505 MN 506 (600)
Q Consensus 505 mN 506 (600)
+.
T Consensus 133 ~~ 134 (230)
T PRK07580 133 CL 134 (230)
T ss_pred Ec
Confidence 75
No 139
>PRK03612 spermidine synthase; Provisional
Probab=98.51 E-value=1.1e-06 Score=98.65 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=79.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC-----CC-CcEEEEEcChHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK-----LE-KKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg-----l~-nrV~~i~gDare~l~~l~~~~ 495 (600)
.++.++|||+|||.|..+..+++.+ .+|+++|+||++++.+++|...+. ++ .+++++++|++++++.
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----- 369 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----- 369 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence 3567899999999999999998874 599999999999999999754332 32 3799999999998864
Q ss_pred cCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
..++||+|++|+|.. ..+|++.+.+.|+++
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 246899999998753 247889999999886
No 140
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.50 E-value=1.3e-06 Score=88.83 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=70.2
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
++++. ..++++|||+|||+|.++..+++++..|+|+|+++.+++.++.++.. . .+++++++|+.++...
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~-~~v~v~~~D~~~~~~~------ 90 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--Y-ERLEVIEGDALKVDLP------ 90 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--C-CcEEEEECchhcCChh------
Confidence 45543 46789999999999999999999988999999999999999988743 2 3599999999875321
Q ss_pred CCccc---EEEeCCCcch-HHHHHHHH
Q 007525 497 AHKIT---QVVMNLPNDA-TEFLDAFR 519 (600)
Q Consensus 497 ~~~fD---~VVmNpP~~a-~eFLdaa~ 519 (600)
.+| .|+.|+|+.. ...+..+.
T Consensus 91 --~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 91 --DFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred --HcCCcceEEEcCChhhHHHHHHHHh
Confidence 244 9999999853 34444443
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.48 E-value=6.8e-06 Score=84.61 Aligned_cols=96 Identities=10% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc-C-C-CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN-K-L-EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN-g-l-~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
....+||++|||.|.++..+++.. .+|+++|+++.+++.++++.... + + ..+++++.+|+++++... .++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----ENT 145 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CCC
Confidence 345699999999999999888874 58999999999999999987543 2 2 236899999999998642 468
Q ss_pred ccEEEeCCCcc--------hHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPND--------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~--------a~eFLdaa~~lLk~~ 525 (600)
||+||+|++.. ..+|++.+.+.|+++
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 99999998731 458899999999886
No 142
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.4e-06 Score=91.69 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=82.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+|++|+||||+-|+=+.++|.. |..|+|+|+++.=++.+++|+++-|+.| +.+++.|++.+..... ...+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~---~~~~ 229 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLP---GGEK 229 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccccccccccc---ccCc
Confidence 678999999999999999988874 3568999999999999999999999998 9999999987754322 1235
Q ss_pred ccEEEeCCCcch--------------------------HHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPNDA--------------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a--------------------------~eFLdaa~~lLk~~ 525 (600)
||.|++|+|.++ .++|+.+..+++++
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999852 25788899999876
No 143
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.47 E-value=2.3e-07 Score=91.33 Aligned_cols=89 Identities=24% Similarity=0.249 Sum_probs=73.6
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
.+++.|+|+|+|.+++.||+++.+|+|+|.+|.-..++.+|++.+|..| ++++++||+++- -+..|+|++.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~--------fe~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYD--------FENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEeccccccc--------ccccceeHHH
Confidence 3899999999999999999998899999999999999999999999986 999999998863 1357888887
Q ss_pred CCcchH------HHHHHHHHHhcC
Q 007525 507 LPNDAT------EFLDAFRGIYRD 524 (600)
Q Consensus 507 pP~~a~------eFLdaa~~lLk~ 524 (600)
.-.++. ..+.+++..|+.
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~ 127 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRY 127 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhc
Confidence 665542 345555555543
No 144
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.45 E-value=3.2e-07 Score=101.18 Aligned_cols=92 Identities=32% Similarity=0.335 Sum_probs=73.0
Q ss_pred CCeEEEEeeechHHHHHHhhCC------CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg------~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|+|+|||.|+++..+++.+ .+|||+|-||.|+..+++-++.|+++++|+++++|++++-. ++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 5789999999999988777653 59999999999999999998999999899999999999842 5689
Q ss_pred cEEEeCCCc------chHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPN------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~------~a~eFLdaa~~lLk~~ 525 (600)
|+||.-+-. ...+.|+++.+.|+++
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 999976543 3467888888888875
No 145
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.44 E-value=1.4e-06 Score=89.45 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=89.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--C------CEEEEEeCcHHHHHHHHHHHHHcCCCCc--EEEEEcChHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--V------KRVYANDLNPYAVDYLERNSVLNKLEKK--IEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g------~~V~AvDiNP~Ave~l~eNaklNgl~nr--V~~i~gDare~l~~l~~ 493 (600)
...+..|||++||+|-+|+-+.+. . .+|+.+|+||+++..+++.++.-++... +.++++||.+.. +
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp---F- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP---F- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---C-
Confidence 346789999999999999988874 2 6899999999999999999988888543 899999999875 2
Q ss_pred hhcCCcccEEEe-----CCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 494 SQKAHKITQVVM-----NLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 494 ~~~~~~fD~VVm-----NpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+...||.++| |-+. ....|.++.++||++ |++-|-+|++.+.
T Consensus 174 --dd~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpG--------Grf~cLeFskv~~ 220 (296)
T KOG1540|consen 174 --DDDSFDAYTIAFGIRNVTH-IQKALREAYRVLKPG--------GRFSCLEFSKVEN 220 (296)
T ss_pred --CCCcceeEEEecceecCCC-HHHHHHHHHHhcCCC--------cEEEEEEcccccc
Confidence 3578999888 3333 457899999999997 5899999999874
No 146
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.44 E-value=8.3e-07 Score=93.87 Aligned_cols=72 Identities=25% Similarity=0.165 Sum_probs=59.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCC----CCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL----EKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl----~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
++.+|||+|||+|.+++.+++.|++|+|+|+|+.+++.+++|++.... ..++.+..+|..++ .+.||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---------~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---------SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---------CCCcC
Confidence 578999999999999999999999999999999999999999886522 12478888987543 25799
Q ss_pred EEEeC
Q 007525 502 QVVMN 506 (600)
Q Consensus 502 ~VVmN 506 (600)
.|++.
T Consensus 215 ~Vv~~ 219 (315)
T PLN02585 215 TVTCL 219 (315)
T ss_pred EEEEc
Confidence 88753
No 147
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.43 E-value=6.3e-07 Score=88.86 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+++..+.++..|||+|||+|.++..+++. +++|+|+|+|+++++.+++|. . .+.++++|+.+.. .
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~~~-------~ 102 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFDPF-------K 102 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccCCC-------C
Confidence 33445677889999999999999999886 579999999999999999874 2 2677888887621 2
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
..+||.|+++-
T Consensus 103 ~~sfD~V~~~~ 113 (204)
T TIGR03587 103 DNFFDLVLTKG 113 (204)
T ss_pred CCCEEEEEECC
Confidence 46899999754
No 148
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.42 E-value=8.2e-07 Score=97.69 Aligned_cols=102 Identities=17% Similarity=0.074 Sum_probs=76.2
Q ss_pred HHHHHhcC--CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 417 RQRLLSGF--NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 417 r~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
+..+++.+ .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++ .++...+++++++|+...... +
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~-~-- 99 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLN-I-- 99 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccC-C--
Confidence 34555553 357799999999999999999998899999999999976543 444434599999998642111 1
Q ss_pred hcCCcccEEEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
+..+||.|+++.+.. ..+++..+.++++++
T Consensus 100 -~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 100 -SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred -CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 246799999987543 246888888989876
No 149
>PLN02366 spermidine synthase
Probab=98.42 E-value=1.9e-05 Score=83.37 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=80.2
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHc--CCC-CcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLN--KLE-KKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklN--gl~-nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
....++||++|||.|..+..+++.. .+|+.+|+++..++.+++..... +++ .+++++.+|++++++.. +.+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~----~~~ 164 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA----PEG 164 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc----cCC
Confidence 3567899999999999999999873 48999999999999999987542 343 37999999999998642 135
Q ss_pred cccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
+||+|++|.+. ...+|+..+.+.|+++
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 79999998754 2458999999999986
No 150
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.42 E-value=8e-07 Score=88.89 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=74.2
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~ 492 (600)
.++++. +++|++|||+|||+|+++-.+|.. | ..|+++|+++..++.+++|++..++.| |.++++|+......
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~-- 138 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWPE-- 138 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTGG--
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhcccc--
Confidence 345543 789999999999999999999986 3 379999999999999999999999986 99999999876532
Q ss_pred HhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||+|+++--.. +.-..+...|+.+
T Consensus 139 ----~apfD~I~v~~a~~--~ip~~l~~qL~~g 165 (209)
T PF01135_consen 139 ----EAPFDRIIVTAAVP--EIPEALLEQLKPG 165 (209)
T ss_dssp ----G-SEEEEEESSBBS--S--HHHHHTEEEE
T ss_pred ----CCCcCEEEEeeccc--hHHHHHHHhcCCC
Confidence 35799999985432 2224566667765
No 151
>PRK08317 hypothetical protein; Provisional
Probab=98.41 E-value=2.9e-06 Score=82.70 Aligned_cols=94 Identities=20% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++.+|||+|||.|.+++.++... ++|+++|+++.+++.++++... ...++.+.++|+.+.. . ....|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~---~---~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP---F---PDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC---C---CCCCc
Confidence 5678999999999999999999862 5999999999999999998332 2235899999986542 1 24679
Q ss_pred cEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
|.|+++... ....++..+.++++++
T Consensus 89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 89 DAVRSDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred eEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence 999986432 2356889999999986
No 152
>PRK06922 hypothetical protein; Provisional
Probab=98.40 E-value=2.1e-06 Score=98.02 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=76.0
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.++..+|+. +.+|+|+|+++.+++.+++++..++. ++.++++|+.++.. .+ +.++||.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~-~f---edeSFDv 490 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSS-SF---EKESVDT 490 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCcc-cc---CCCCEEE
Confidence 46889999999999999888875 46999999999999999999876654 48899999987431 12 2467999
Q ss_pred EEeCCCcc-----------------hHHHHHHHHHHhcCC
Q 007525 503 VVMNLPND-----------------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~-----------------a~eFLdaa~~lLk~~ 525 (600)
|+++++.. ...++..+.++|+++
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 99885431 247888999999986
No 153
>PRK01581 speE spermidine synthase; Validated
Probab=98.40 E-value=8.3e-06 Score=87.92 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHH---HHc--CC-CCcEEEEEcChHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNS---VLN--KL-EKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNa---klN--gl-~nrV~~i~gDare~l~~l~~~~ 495 (600)
.....+||++|||.|..+..+++.. .+|+++|++|++++.+++.- ..| .+ +.+++++.+|+++++..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-----
Confidence 4556799999999999888888864 59999999999999999632 122 23 34799999999999864
Q ss_pred cCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
...+||+|++|+|.. ..+|+..+.+.|+++
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 246799999998642 257999999999986
No 154
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.9e-07 Score=89.37 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=79.5
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
.++++. +++|+.||++|||+|+-+--+|+.+.+|+++|..+..++.+++|++..|+.| |.+.++|+..-...
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~----- 135 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPE----- 135 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCC-----
Confidence 345543 7899999999999999999999998899999999999999999999999998 99999999876532
Q ss_pred cCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...||+|+..--. .+.=+.+..-|+++
T Consensus 136 -~aPyD~I~Vtaaa--~~vP~~Ll~QL~~g 162 (209)
T COG2518 136 -EAPYDRIIVTAAA--PEVPEALLDQLKPG 162 (209)
T ss_pred -CCCcCEEEEeecc--CCCCHHHHHhcccC
Confidence 4689999985311 11113445557765
No 155
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.40 E-value=5.8e-07 Score=92.38 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCC-----cEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEK-----KIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~n-----rV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
|..|||+|||.|-++.++|+.|+.|+|+|+++++++.+++.++.+-+.+ ++++.+.|+.+.. +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---------~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---------GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---------cccc
Confidence 5789999999999999999999999999999999999999976665443 3677777777653 4599
Q ss_pred EEEeCCC----cchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP----~~a~eFLdaa~~lLk~~ 525 (600)
.|++--- ....+|++.....++++
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCC
Confidence 9986321 12357999999999987
No 156
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.39 E-value=6.7e-06 Score=84.33 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=84.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh-cCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ-KAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~-~~~~ 499 (600)
..+...||++|+++|+-|+.+|+. +++|+++|.+++.++.+++|++..|+.++|+++.||+.+.+..+...+ ..++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 345679999999999999999874 469999999999999999999999999999999999999998865321 1258
Q ss_pred ccEEEeCCCcc-hHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~-a~eFLdaa~~lLk~~ 525 (600)
||.|++|--.. -..+++.+.++++++
T Consensus 157 fD~iFiDadK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 157 FDFIFVDADKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred ccEEEecCCHHHhHHHHHHHHHhcCCC
Confidence 99999995432 246777778888775
No 157
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.39 E-value=3.3e-06 Score=81.78 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=70.9
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhc
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQK 496 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~ 496 (600)
..+.+|++|||+|||+|.++..++++. ++|+|+|+|+.+ +..+ ++++++|+.+. +..+.+..+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHhC
Confidence 346889999999999999999888752 479999999964 2333 78888887653 111111112
Q ss_pred CCcccEEEeCCC-c-c-------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 497 AHKITQVVMNLP-N-D-------------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 497 ~~~fD~VVmNpP-~-~-------------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
...||.|++|.+ . . ...++..+.++++++ |.+.+..|..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~lvi~~~~~ 149 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK--------GNFVVKVFQG 149 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC--------CEEEEEEccC
Confidence 457999999852 1 1 135788888888876 4666655544
No 158
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.38 E-value=3.8e-06 Score=88.95 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=71.5
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..|.+|||+|||.|.+++.++..|. .|+|+|.++.++..++...+..+...++.++.+|+.+... ...||.|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEE
Confidence 3688999999999999999999874 7999999999887655444433333359999999876531 3579999
Q ss_pred EeCC-C---cchHHHHHHHHHHhcCC
Q 007525 504 VMNL-P---NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNp-P---~~a~eFLdaa~~lLk~~ 525 (600)
++.- - .....++..+.+.|+++
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCC
Confidence 9742 1 12357889999999886
No 159
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.37 E-value=3e-06 Score=88.57 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=76.3
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~ 494 (600)
..|++.+.++..|||+|||+|.++.++++. +.+|+|+|+|+++++.+++++....-.-+|.++++|..+.+......
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP 134 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc
Confidence 345556778889999999999999999987 57999999999999999999876432224788999998754321100
Q ss_pred hcCCcccEEEeC------CCcchHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMN------LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmN------pP~~a~eFLdaa~~lLk~~ 525 (600)
.......++++ +|..+..+|..+.+.|+++
T Consensus 135 -~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 135 -AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred -ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 00122233333 2334567899999999886
No 160
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.36 E-value=5.2e-06 Score=82.44 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=77.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.++..|||+|||.|.+++.+++.+++|+++|+|+.+++.+++|+..++. .+.+..+|+.++... ..+.||.|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-----HPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-----cCCCccEEE
Confidence 4688999999999999999999989999999999999999999988877 378888998876532 246899998
Q ss_pred eCCCc----chHHHHHHHHHHhcCC
Q 007525 505 MNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+.... ....++..+.+.++++
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 120 CMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred EhhHhhccCCHHHHHHHHHHHcCCC
Confidence 85321 2346788888888876
No 161
>PLN03075 nicotianamine synthase; Provisional
Probab=98.34 E-value=4.1e-06 Score=87.93 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=75.0
Q ss_pred CCCeEEEEeeechHH-HHHHhh-C--CCEEEEEeCcHHHHHHHHHHHHH-cCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 426 FKDVVCDVFAGVGPI-CIPAAK-I--VKRVYANDLNPYAVDYLERNSVL-NKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 426 ~ge~VLDlfAGvG~F-aIpaAk-k--g~~V~AvDiNP~Ave~l~eNakl-Ngl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++|+|+|||-|++ ++.+++ . +.+++++|+++++++.++++++. .++.++++|..+|+.+.... ...|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~------l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES------LKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc------cCCc
Confidence 778999999997766 454443 2 46899999999999999999965 88988899999999885321 2579
Q ss_pred cEEEeCC-----CcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNL-----PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNp-----P~~a~eFLdaa~~lLk~~ 525 (600)
|+|+++- +..-.+.++.+.+.++++
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCC
Confidence 9999982 123457889999999886
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.34 E-value=6.9e-06 Score=82.90 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=90.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE-cChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-MDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~-gDare~l~~l~~~~~~~~ 499 (600)
..+...||++|.++|+-|+.+|.. ..+++++|.||+.++.|++|++..|++++|+.+. +|+.+.+... ..++
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~ 132 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGS 132 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCC
Confidence 567889999999999999999975 2589999999999999999999999999999999 6999988651 2578
Q ss_pred ccEEEeCCCc-chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 500 ITQVVMNLPN-DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 500 fD~VVmNpP~-~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
||.|++|-=. .-.+|++.+..+++++ +.|-+....-
T Consensus 133 fDliFIDadK~~yp~~le~~~~lLr~G--------Gliv~DNvl~ 169 (219)
T COG4122 133 FDLVFIDADKADYPEYLERALPLLRPG--------GLIVADNVLF 169 (219)
T ss_pred ccEEEEeCChhhCHHHHHHHHHHhCCC--------cEEEEeeccc
Confidence 9999998522 2358999999999986 4666665543
No 163
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.33 E-value=1.2e-06 Score=86.73 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~ 496 (600)
+.|.+.+.+|.+|||+|||.|.+--.+.. +++.++|+|++++.+..+.. +| +.++++|+.+.+... +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f----~ 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADF----P 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhC----C
Confidence 45777899999999999999999888876 68899999999998876544 45 468999999987653 4
Q ss_pred CCcccEEEeCCCcc----hHHHHHHHHHHhc
Q 007525 497 AHKITQVVMNLPND----ATEFLDAFRGIYR 523 (600)
Q Consensus 497 ~~~fD~VVmNpP~~----a~eFLdaa~~lLk 523 (600)
+.+||.|||+---. ..+.|++++++-+
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 68999999863111 1244555555543
No 164
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.33 E-value=5.8e-06 Score=80.33 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=78.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+|+|+|||.|.++..+++.+ ++++++|+++.+++.++++.. ..+++.++.+|+.+.. . ..+.|
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~---~---~~~~~ 107 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP---F---EDNSF 107 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC---C---CCCcE
Confidence 3468899999999999999999874 489999999999999999876 3345899999998753 1 13579
Q ss_pred cEEEeCC----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNL----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNp----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|+|+++. ......+++.+..+++++ |++-+.++.
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~ 145 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPG--------GRLVILEFS 145 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCC--------cEEEEEEec
Confidence 9998753 223467889999999886 456555543
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.33 E-value=3.9e-06 Score=85.11 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=87.6
Q ss_pred CeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 428 DVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
.++||+|||.|.|.+.+|++. ..++|+|+....+..+..-+...++.| +.++++||.+++..+. ++++.|.|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~---~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLI---PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcC---CCCCeeEEEE
Confidence 589999999999999999974 589999999999999999999999985 9999999999998765 2458999999
Q ss_pred CCCc------------chHHHHHHHHHHhcCCCCCCCCCccEEEE
Q 007525 506 NLPN------------DATEFLDAFRGIYRDRPEDAKFTFPKIHL 538 (600)
Q Consensus 506 NpP~------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHv 538 (600)
+.|. ....|+..+.+.|+++ |.||+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g--------G~l~~ 162 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG--------GVLHF 162 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCC--------CEEEE
Confidence 9886 2358999999999987 57776
No 166
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.32 E-value=5e-06 Score=82.64 Aligned_cols=145 Identities=20% Similarity=0.135 Sum_probs=93.7
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
-..++|+|||+|-|+..+|.++..++|+|+++.|++.+++.+. +..+ |++.++|..++. +.++||.||+-
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~-V~~~~~dvp~~~-------P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPH-VEWIQADVPEFW-------PEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SS-EEEEES-TTT----------SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCC-eEEEECcCCCCC-------CCCCeeEEEEe
Confidence 3689999999999999999998899999999999999999875 4564 999999998875 36789999974
Q ss_pred -------CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC----CCCchhHHHHHHHHHhhcccceEEEEeEEec
Q 007525 507 -------LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA----RDPEFDFHERIRIALVEVAVNVEMRRVRLVA 575 (600)
Q Consensus 507 -------pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~----~d~~~di~eRI~~~L~~~~~~~~v~~VR~VA 575 (600)
+......+++.+...|.++ | -.|-+| |..+ ..-.. -.+-|...+.+.+..++...++.-+
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pg---G----~LV~g~-~rd~~c~~wgh~~-ga~tv~~~~~~~~~~~~~~~~~~~~ 184 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPG---G----HLVFGH-ARDANCRRWGHAA-GAETVLEMLQEHLTEVERVECRGGS 184 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEE---E----EEEEEE-E-HHHHHHTT-S---HHHHHHHHHHHSEEEEEEEEE-SS
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCC---C----EEEEEE-ecCCcccccCccc-chHHHHHHHHHHhhheeEEEEcCCC
Confidence 2122235677777888776 2 123333 2211 00000 1122333444555667888899999
Q ss_pred CCCcEEEEEEEeccc
Q 007525 576 PGKWMLCASFVLPES 590 (600)
Q Consensus 576 P~K~mycvsFrlp~~ 590 (600)
|+..-+-+.|+-|.+
T Consensus 185 ~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 185 PNEDCLLARFRNPVS 199 (201)
T ss_dssp TTSEEEEEEEE--SS
T ss_pred CCCceEeeeecCCcC
Confidence 999999999998854
No 167
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.1e-06 Score=83.11 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+.++++|||+|..+-.+++. + ....|.||||+|++..++.++.|++. +.+++.|....++ .++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~-------~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR-------NESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc-------cCCccEE
Confidence 678999999999999999885 3 57999999999999999999999985 8899999988875 3689999
Q ss_pred EeCCCc
Q 007525 504 VMNLPN 509 (600)
Q Consensus 504 VmNpP~ 509 (600)
+.|||+
T Consensus 115 vfNPPY 120 (209)
T KOG3191|consen 115 VFNPPY 120 (209)
T ss_pred EECCCc
Confidence 999998
No 168
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.30 E-value=7.6e-07 Score=92.50 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=65.2
Q ss_pred eeecChhHHHHHHHHhc--CCCCCeEEEEeeechHHHHHHhh---------CCCEEEEEeCcHHHHHHHHHHHHHcCCCC
Q 007525 407 IYWNSKLATERQRLLSG--FNFKDVVCDVFAGVGPICIPAAK---------IVKRVYANDLNPYAVDYLERNSVLNKLEK 475 (600)
Q Consensus 407 fy~n~Rl~tEr~Riv~~--l~~ge~VLDlfAGvG~FaIpaAk---------kg~~V~AvDiNP~Ave~l~eNaklNgl~n 475 (600)
.|+.|+...+- +++. ..++++|+|.+||+|.|.+.+.+ ....++|+|+++.++..++-|+.++++..
T Consensus 27 ~~~TP~~i~~l--~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 27 QFYTPREIVDL--MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp GC---HHHHHH--HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred eeehHHHHHHH--HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 35566655432 2332 45678999999999999999886 34689999999999999999999988754
Q ss_pred c-EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 476 K-IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 476 r-V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
. ..+.++|........ ....||.||+|||...
T Consensus 105 ~~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFI----KNQKFDVIIGNPPFGS 137 (311)
T ss_dssp BGCEEEES-TTTSHSCT----ST--EEEEEEE--CTC
T ss_pred ccccccccccccccccc----cccccccccCCCCccc
Confidence 3 468888876542110 1357999999999853
No 169
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.25 E-value=8.9e-06 Score=86.13 Aligned_cols=100 Identities=13% Similarity=-0.021 Sum_probs=73.9
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
+++.. ..+|.+|||+|||+|.+++.++..|. .|+|+|.++.++..++...+..+...++.+..+++.+...
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~------ 185 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE------ 185 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC------
Confidence 45553 35689999999999999999998875 7999999999987654433332223358888888876531
Q ss_pred cCCcccEEEeCCC----cchHHHHHHHHHHhcCC
Q 007525 496 KAHKITQVVMNLP----NDATEFLDAFRGIYRDR 525 (600)
Q Consensus 496 ~~~~fD~VVmNpP----~~a~eFLdaa~~lLk~~ 525 (600)
...||.|++.-- .....+|.++.++|+++
T Consensus 186 -~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 186 -LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred -CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC
Confidence 247999987531 13457899999999987
No 170
>PRK05785 hypothetical protein; Provisional
Probab=98.24 E-value=6.5e-06 Score=82.81 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++.+|||+|||+|.++..+++. +.+|+|+|+++++++.+++. ...+++|+.+.. + +.++||.
T Consensus 49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp---~---~d~sfD~ 113 (226)
T PRK05785 49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALP---F---RDKSFDV 113 (226)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCC---C---CCCCEEE
Confidence 345789999999999999999988 57999999999999998753 134678887642 1 2578999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRD 524 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~ 524 (600)
|++..-- .....+.++.+++++
T Consensus 114 v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 114 VMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred EEecChhhccCCHHHHHHHHHHHhcC
Confidence 9986522 234688899999986
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.24 E-value=8e-06 Score=78.95 Aligned_cols=120 Identities=21% Similarity=0.320 Sum_probs=74.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcC--CCCcEEEEEcChHHHH-HHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRFI-DAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNg--l~nrV~~i~gDare~l-~~l~~~~~~~ 498 (600)
..++.+||++|||+|..|+.+|+. +++|++-|.++ +++.++.|++.|+ ..+++.+...|..+.. .... ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---EPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---ccc
Confidence 557899999999999999999998 57999999999 9999999999998 5667888888865533 2222 235
Q ss_pred cccEEEe-CCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHH
Q 007525 499 KITQVVM-NLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIR 556 (600)
Q Consensus 499 ~fD~VVm-NpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~ 556 (600)
.||+|+. |.-+ ....++..+..+++++ + ..+-.|..-.. ....+.++++
T Consensus 119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~---~----~vl~~~~~R~~--~~~~F~~~~~ 171 (173)
T PF10294_consen 119 SFDVILASDVLYDEELFEPLVRTLKRLLKPN---G----KVLLAYKRRRK--SEQEFFDRLK 171 (173)
T ss_dssp SBSEEEEES--S-GGGHHHHHHHHHHHBTT----T----TEEEEEE-S-T--GGCHHHHHH-
T ss_pred cCCEEEEecccchHHHHHHHHHHHHHHhCCC---C----EEEEEeCEecH--HHHHHHHHhh
Confidence 7999885 4433 3456778888888765 2 25555554322 2234555543
No 172
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.22 E-value=3.9e-06 Score=81.68 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=68.2
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
.+.+.+.++++|||+|||.|.++..+++. +..++++|+++++++.++. + +++++++|+.+.+.. . ..
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~-~---~~ 73 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEA-F---PD 73 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccc-c---CC
Confidence 45556778899999999999999988865 5689999999999988754 2 267888998764321 1 24
Q ss_pred CcccEEEeCCCc----chHHHHHHHHHHhc
Q 007525 498 HKITQVVMNLPN----DATEFLDAFRGIYR 523 (600)
Q Consensus 498 ~~fD~VVmNpP~----~a~eFLdaa~~lLk 523 (600)
.+||.|+++..- ....+|.++.+..+
T Consensus 74 ~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 74 KSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 679999998653 23456666666544
No 173
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.21 E-value=9e-06 Score=74.70 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=73.9
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
.++.....++.+|||+|||.|.++..+++.|.+|+++|+++.+++. . ++...+.+..+... +.
T Consensus 14 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~~------~~ 76 (161)
T PF13489_consen 14 ERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------R-NVVFDNFDAQDPPF------PD 76 (161)
T ss_dssp HHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------T-TSEEEEEECHTHHC------HS
T ss_pred HHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------h-hhhhhhhhhhhhhc------cc
Confidence 3444446788999999999999999999999999999999999998 1 13333333332221 25
Q ss_pred CcccEEEeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 498 HKITQVVMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 498 ~~fD~VVmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+.||.|++.--- ....+|..+.++++++ |++.+..+..
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lkpg--------G~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPG--------GYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEE--------EEEEEEEEBT
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCC--------CEEEEEEcCC
Confidence 789999985321 2467899999999986 5777777654
No 174
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.7e-06 Score=95.29 Aligned_cols=100 Identities=25% Similarity=0.223 Sum_probs=87.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++-+|||.+|++|--+|..|+. | .+|+|+|+|+.+++..++|++.|++++.++...+||.-.+-... .....|
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~--~~~~~F 184 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP--MVAKFF 184 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc--cccccc
Confidence 456778999999999999999985 3 48999999999999999999999999999999999998875421 113679
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|=+||-.+...|||+|.+.++.+
T Consensus 185 DvIDLDPyGs~s~FLDsAvqav~~g 209 (525)
T KOG1253|consen 185 DVIDLDPYGSPSPFLDSAVQAVRDG 209 (525)
T ss_pred ceEecCCCCCccHHHHHHHHHhhcC
Confidence 9999999888889999999999876
No 175
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.19 E-value=7.8e-06 Score=85.95 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=66.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|.+++|+.||.|+++..+++.. ++|+|+|.+|+|++.+++++.. .++++++++|..++...+.. ....+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~--~~~~v 91 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE--GLGKV 91 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc--CCCcc
Confidence 4578899999999999999999873 6999999999999999988754 35799999999998654321 11269
Q ss_pred cEEEeCCCc
Q 007525 501 TQVVMNLPN 509 (600)
Q Consensus 501 D~VVmNpP~ 509 (600)
|.|++|+=-
T Consensus 92 DgIl~DLGv 100 (296)
T PRK00050 92 DGILLDLGV 100 (296)
T ss_pred CEEEECCCc
Confidence 999988754
No 176
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.19 E-value=8.1e-06 Score=79.90 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=76.5
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+.+|||+|||.|.++..+++.+ .+|+++|+++.+++.++.+.. . ++.++.+|+.+... +.+.||.|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d~~~~~~------~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----E-NVQFICGDAEKLPL------EDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----C-CCeEEecchhhCCC------CCCceeEE
Confidence 45689999999999999999875 478999999999999887654 2 48899999876531 24679999
Q ss_pred EeCCCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 504 VMNLPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 504 VmNpP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
+++-.. ....++..+.++++++ |++-+-++..
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~~~--------G~l~~~~~~~ 138 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLKPG--------GLLAFSTFGP 138 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcCCC--------cEEEEEeCCc
Confidence 987543 2357889999999886 4666555543
No 177
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.18 E-value=1e-05 Score=86.60 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=72.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.++++...+ +++++.+|+.+... ..+.||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence 46789999999999999998875 469999999999999999987533 37789999876421 2457999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcCC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
|+++... .....+.++.++|+++
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCC
Confidence 9986532 2346789999999986
No 178
>PLN02823 spermine synthase
Probab=98.16 E-value=5.5e-05 Score=80.90 Aligned_cols=95 Identities=16% Similarity=0.283 Sum_probs=78.1
Q ss_pred CCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
....||.+|+|.|..+..+++. + .+|+++|++|..++.++++...++ + +.+++++.+|++.+++. ..++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-----~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-----RDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-----CCCCc
Confidence 4568999999999999988885 3 589999999999999999987653 2 35799999999999854 24689
Q ss_pred cEEEeCCCc----------chHHHHH-HHHHHhcCC
Q 007525 501 TQVVMNLPN----------DATEFLD-AFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~----------~a~eFLd-aa~~lLk~~ 525 (600)
|+|++|.+. ...+|+. .+.+.|+++
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence 999999633 1458887 888899876
No 179
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.13 E-value=4.8e-06 Score=88.59 Aligned_cols=77 Identities=26% Similarity=0.266 Sum_probs=68.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
+-.+.+|||+|||+|-+++.+|+.|+ +|+|+|-+.-| +.+++.++.|++++.|+++.+.+.+.. + |.+++|.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~--L----P~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE--L----PVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe--c----CccceeE
Confidence 45789999999999999999999986 99999999888 999999999999999999999999872 1 2478999
Q ss_pred EEeCC
Q 007525 503 VVMNL 507 (600)
Q Consensus 503 VVmNp 507 (600)
||..-
T Consensus 131 IvSEW 135 (346)
T KOG1499|consen 131 IVSEW 135 (346)
T ss_pred Eeehh
Confidence 99654
No 180
>PRK06202 hypothetical protein; Provisional
Probab=98.11 E-value=8.4e-06 Score=81.39 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=63.9
Q ss_pred CCCCeEEEEeeechHHHHHHhh----CC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 425 NFKDVVCDVFAGVGPICIPAAK----IV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAk----kg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
.++.+|||+|||+|.++..+++ .| .+|+|+|+++++++.+++++..+++ .+..+|+..+.. ..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~------~~~ 128 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA------EGE 128 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc------cCC
Confidence 4678999999999999998875 23 4999999999999999988765554 444444433311 146
Q ss_pred cccEEEeCCCcc------hHHHHHHHHHHhc
Q 007525 499 KITQVVMNLPND------ATEFLDAFRGIYR 523 (600)
Q Consensus 499 ~fD~VVmNpP~~------a~eFLdaa~~lLk 523 (600)
+||.|+++.--. ..+++.++.++++
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 899999985321 2356777777665
No 181
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.2e-05 Score=83.03 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=69.9
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
++|++. +.+++.|+++|+|.|.++.++++++.+|+|+|+++..++.|++... .. ++++++++|+..+--.-.
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~-~n~~vi~~DaLk~d~~~l--- 93 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PY-DNLTVINGDALKFDFPSL--- 93 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cc-cceEEEeCchhcCcchhh---
Confidence 456654 6678999999999999999999999999999999999999998765 23 359999999987631100
Q ss_pred cCCcccEEEeCCCcc
Q 007525 496 KAHKITQVVMNLPND 510 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~ 510 (600)
..++.||.|+|+.
T Consensus 94 --~~~~~vVaNlPY~ 106 (259)
T COG0030 94 --AQPYKVVANLPYN 106 (259)
T ss_pred --cCCCEEEEcCCCc
Confidence 1579999999996
No 182
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.10 E-value=1.2e-05 Score=83.77 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=70.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|+.|||+||+-|+-+..+|.. ...|+|+|+++.-++.++.|+++.|+.+ +.+++.|+........ ...|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~----~~~f 157 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKP----ESKF 157 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHH----TTTE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecccccccccc----cccc
Confidence 568999999999999999999875 2599999999999999999999999997 8888899998865432 3469
Q ss_pred cEEEeCCCcc
Q 007525 501 TQVVMNLPND 510 (600)
Q Consensus 501 D~VVmNpP~~ 510 (600)
|.|++|+|.+
T Consensus 158 d~VlvDaPCS 167 (283)
T PF01189_consen 158 DRVLVDAPCS 167 (283)
T ss_dssp EEEEEECSCC
T ss_pred chhhcCCCcc
Confidence 9999999985
No 183
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.06 E-value=1.7e-05 Score=84.12 Aligned_cols=110 Identities=23% Similarity=0.174 Sum_probs=84.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.|.+|+|+|||+|.++..||..|+ +|||+|-+ ++.+++++=++-|++.++|.++.|.+.+.- .+++.|++|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-------LPEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-------LPEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-------CchhccEEE
Confidence 688999999999999999999985 99999988 467899999999999999999999998763 257899999
Q ss_pred eCCCcch------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 505 MNLPNDA------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 505 mNpP~~a------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
..|=... .+-.-.+++.+++...- --..+.||.--|+.+
T Consensus 249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkM-fPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESYLHARKWLKPNGKM-FPTVGDIHLAPFSDE 293 (517)
T ss_pred eccchhhhhhHHHHHHHHHHHhhcCCCCcc-cCcccceeecccchH
Confidence 8875532 23223456777776211 112467898777654
No 184
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=4.7e-05 Score=77.22 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=86.6
Q ss_pred CCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
...+++|+|..+|+=++..|.. +++|+|+|+|+++++...+=.+..|+..+|.++.|++-+.+.++.+....++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5789999999999999888874 6799999999999999999999999999999999999999999887655678999
Q ss_pred EEeCCCcch-HHHHHHHHHHhcCC
Q 007525 503 VVMNLPNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~~a-~eFLdaa~~lLk~~ 525 (600)
+++|-=... ..+.+..+++++.+
T Consensus 153 aFvDadK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 153 AFVDADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred EEEccchHHHHHHHHHHHhhcccc
Confidence 999853221 26778888998876
No 185
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.05 E-value=7.2e-06 Score=91.82 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=69.8
Q ss_pred eeecChhHHHHH--HHHhcCC-----CCCeEEEEeeechHHHHHHhhCC----------CEEEEEeCcHHHHHHHHHHHH
Q 007525 407 IYWNSKLATERQ--RLLSGFN-----FKDVVCDVFAGVGPICIPAAKIV----------KRVYANDLNPYAVDYLERNSV 469 (600)
Q Consensus 407 fy~n~Rl~tEr~--Riv~~l~-----~ge~VLDlfAGvG~FaIpaAkkg----------~~V~AvDiNP~Ave~l~eNak 469 (600)
-|+.|...++.. .+..... .+.+|+|.+||+|.|.++++.+. ..++|+|+++.++..++.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 466777666651 2222211 34589999999999999998631 369999999999999999998
Q ss_pred HcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 470 LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 470 lNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
..+.- .+.+.+.|.......... ...+.||+||.|||+..
T Consensus 85 ~~~~~-~~~i~~~d~l~~~~~~~~-~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 85 EFALL-EINVINFNSLSYVLLNIE-SYLDLFDIVITNPPYGR 124 (524)
T ss_pred hcCCC-Cceeeecccccccccccc-cccCcccEEEeCCCccc
Confidence 77622 255666664432111011 11357999999999964
No 186
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.04 E-value=1.2e-05 Score=82.58 Aligned_cols=85 Identities=12% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCCeEEEEeeechHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.+.+|||+|||+|.++..+++. ++.|+|+|+++.+++.++++. . ++.+..+|+.+.. + ..+.|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~lp---~---~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHRLP---F---ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeecccCC---C---cCCce
Confidence 4578999999999999988764 247999999999999987652 3 3788889987642 1 24679
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+... +..++.++.++|+++
T Consensus 153 D~I~~~~---~~~~~~e~~rvLkpg 174 (272)
T PRK11088 153 DAIIRIY---APCKAEELARVVKPG 174 (272)
T ss_pred eEEEEec---CCCCHHHHHhhccCC
Confidence 9998754 234567889999986
No 187
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.03 E-value=9.7e-06 Score=74.20 Aligned_cols=57 Identities=33% Similarity=0.313 Sum_probs=51.0
Q ss_pred eEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH
Q 007525 429 VVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare 486 (600)
+|+|+|||+|.+++.+++.+ ++|+++|.+|.+++.+++|++.|++.+ +.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 58999999999999999875 379999999999999999999999976 8888876654
No 188
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.98 E-value=1.9e-05 Score=85.82 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=86.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhh--CC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAK--IV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAk--kg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.++|++|+||||--|+=+.++|. ++ ..|+|+|.|..-++.++.|+.+.|+.| ..+.+.|+++|....+ .++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~----~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF----PGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc----Cccc
Confidence 57899999999999988877775 33 589999999999999999999999997 7789999998864433 3489
Q ss_pred cEEEeCCCcch--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 501 TQVVMNLPNDA--------------------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 501 D~VVmNpP~~a--------------------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
|+|++|-|.++ .+.|..|..+++.+ | |-||.-+.-
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G---G------vLVYSTCSI 374 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG---G------VLVYSTCSI 374 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC---c------EEEEEeeec
Confidence 99999999864 14567778887764 3 667776653
No 189
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.97 E-value=2e-05 Score=81.62 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=86.5
Q ss_pred eccEEEEEecCeeeecChhHHHHHHHHh--cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 395 FHHLSLFRCFDTIYWNSKLATERQRLLS--GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 395 EnG~~F~vD~~kfy~n~Rl~tEr~Riv~--~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
..|..|.-|++.-+..|.+.. +.|++ .++++++||++|-|+|..+..+..+|++|+|+|++|.++..+.+..+---
T Consensus 27 ~~~~kfnkd~GQHilkNp~v~--~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 27 SGGSKFNKDFGQHILKNPLVI--DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred ccCcccccccchhhhcCHHHH--HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 356788888888777664332 34443 38899999999999999999999999999999999999999999876555
Q ss_pred CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 473 LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 473 l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
.+++.+++.||....- ...||.+|.|+|+.
T Consensus 105 ~~~kLqV~~gD~lK~d--------~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 105 KSGKLQVLHGDFLKTD--------LPRFDGCVSNLPYQ 134 (315)
T ss_pred ccceeeEEecccccCC--------CcccceeeccCCcc
Confidence 5688999999986531 35699999999984
No 190
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.93 E-value=0.00017 Score=73.81 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=93.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCC---CCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKL---EKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl---~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
......||=+|.|.|..+-.+.+.. .+|+++||+|..++.+++-...... +.+++++.+|++.++++. ..
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~ 148 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE 148 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence 3467899999999999999999875 6999999999999999997765432 347999999999999752 34
Q ss_pred -cccEEEeCCCc--------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhccc
Q 007525 499 -KITQVVMNLPN--------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAV 564 (600)
Q Consensus 499 -~fD~VVmNpP~--------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~ 564 (600)
+||+|++|++. .+.+|++.+.+.|+++ |++.+..-+.... ......+.+.+.....
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~--------Gv~v~~~~~~~~~--~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD--------GVLVLQAGSPFLH--PELFKSILKTLRSVFP 213 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE--------EEEEEEEEETTTT--HHHHHHHHHHHHTTSS
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC--------cEEEEEccCcccc--hHHHHHHHHHHHHhCC
Confidence 89999998765 2479999999999986 5666665333322 2344555556655433
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.93 E-value=6.2e-05 Score=84.46 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.+..+||+|||.|.|.+.+|+.. ..++|+|+....+..+.+.++..++.| +.++++|+..+... + +..++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~-~---~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILND-L---PNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHh-c---CcccccEE
Confidence 57899999999999999999973 589999999999999999999999987 88999998765543 3 24679999
Q ss_pred EeCCCc------------chHHHHHHHHHHhcCCCCCCCCCccEEEE
Q 007525 504 VMNLPN------------DATEFLDAFRGIYRDRPEDAKFTFPKIHL 538 (600)
Q Consensus 504 VmNpP~------------~a~eFLdaa~~lLk~~~~~g~~~~p~IHv 538 (600)
.++.|. ...+|++.+.++|+++ |.||+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g--------G~i~~ 460 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDN--------GNLVF 460 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCC--------CEEEE
Confidence 998885 2358999999999987 57775
No 192
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.89 E-value=5.6e-05 Score=76.76 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=79.6
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH-------cC----CCCcEEEEEcChHHHHHHHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL-------NK----LEKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl-------Ng----l~nrV~~i~gDare~l~~l~~ 493 (600)
.++.+||+.+||-|.-++.+|.+|..|+|+|+++.|++.+.+.... +. -...|+++++|.+++-...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-- 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-- 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc--
Confidence 4678999999999999999999999999999999999998652110 00 0125899999999863200
Q ss_pred hhcCCcccEEE-----eC-CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 494 SQKAHKITQVV-----MN-LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 494 ~~~~~~fD~VV-----mN-pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
...+.||.|+ += ||..-..+...+..+++++ +.+++.+|...
T Consensus 120 -~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg--------g~llll~~~~~ 167 (226)
T PRK13256 120 -NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN--------TQILLLVMEHD 167 (226)
T ss_pred -cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC--------cEEEEEEEecC
Confidence 0124677644 12 4455567889999999986 57888888643
No 193
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.89 E-value=8.9e-07 Score=76.37 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=57.4
Q ss_pred EEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC
Q 007525 431 CDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 508 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP 508 (600)
||+|||+|.++..++.. ..+++++|+|+.+++.+++.+...+..+ ...++.+..+..... ..++||.|++.-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD----PPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc----cccccceehhhhh
Confidence 79999999999999987 5799999999999999999888877654 555555554443210 1248999998543
Q ss_pred c----chHHHHHHHHHHhcCC
Q 007525 509 N----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 509 ~----~a~eFLdaa~~lLk~~ 525 (600)
- ....++..+.++++++
T Consensus 76 l~~l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS
T ss_pred HhhhhhHHHHHHHHHHHcCCC
Confidence 2 2346777777777775
No 194
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.86 E-value=9.2e-05 Score=75.98 Aligned_cols=140 Identities=20% Similarity=0.238 Sum_probs=94.7
Q ss_pred HHHHhc--CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSG--FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~--l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
++|++. +.+++.|+|+|+|.|.++-.+++.+.+|+++|+++..++.+++... ...+++++++|+.++-....
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~--- 93 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDL--- 93 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGH---
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHh---
Confidence 345554 4579999999999999999999999999999999999999998766 22359999999987632100
Q ss_pred cCCcccEEEeCCCcch-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhh--------cc-cc
Q 007525 496 KAHKITQVVMNLPNDA-TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVE--------VA-VN 565 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a-~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~--------~~-~~ 565 (600)
.......|+.|+|+.. ..++..+....+. |..+.+.+... ++.+|+-..-+. .. .-
T Consensus 94 ~~~~~~~vv~NlPy~is~~il~~ll~~~~~---------g~~~~~l~vq~-----e~a~rl~a~pg~~~~~~lsv~~q~~ 159 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISSPILRKLLELYRF---------GRVRMVLMVQK-----EVAERLLAKPGSKRYSRLSVLAQAF 159 (262)
T ss_dssp CSSSEEEEEEEETGTGHHHHHHHHHHHGGG---------CEEEEEEEEEH-----HHHHHHHTSTTSTTCSHHHHHHHHH
T ss_pred hcCCceEEEEEecccchHHHHHHHhhcccc---------cccceEEEEeh-----hhhhhccCCCCCCccchhhhhhhhh
Confidence 0134568999999853 3566666664432 47788887653 344444321110 00 12
Q ss_pred eEEEEeEEecCC
Q 007525 566 VEMRRVRLVAPG 577 (600)
Q Consensus 566 ~~v~~VR~VAP~ 577 (600)
.+++.+..|.|.
T Consensus 160 ~~i~~l~~v~~~ 171 (262)
T PF00398_consen 160 FDIKLLFKVPPS 171 (262)
T ss_dssp EEEEEEEEE-GG
T ss_pred hceeEecccCCc
Confidence 567777777755
No 195
>PRK04148 hypothetical protein; Provisional
Probab=97.83 E-value=0.0001 Score=69.35 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=60.5
Q ss_pred CCCeEEEEeeechH-HHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGP-ICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~-FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
++.+|+|+|||.|. ++..+++.|..|+|+|+||.+++.++++ + +.++.+|.++--..+. ..+|.|.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y-----~~a~liy 82 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIY-----KNAKLIY 82 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHH-----hcCCEEE
Confidence 45789999999996 9999999999999999999999888776 2 5788899887543332 3588887
Q ss_pred e-CCCcchHHHHHH
Q 007525 505 M-NLPNDATEFLDA 517 (600)
Q Consensus 505 m-NpP~~a~eFLda 517 (600)
. .||......+-.
T Consensus 83 sirpp~el~~~~~~ 96 (134)
T PRK04148 83 SIRPPRDLQPFILE 96 (134)
T ss_pred EeCCCHHHHHHHHH
Confidence 4 777644443333
No 196
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.80 E-value=7.6e-05 Score=74.66 Aligned_cols=70 Identities=27% Similarity=0.305 Sum_probs=56.0
Q ss_pred EEEEeeechHHHHHHhhCCC--EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 430 VCDVFAGVGPICIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAkkg~--~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
|+|+||-=|+.++.+++.|. +|+|+|+|+..++.+++|++.+++.++|++..+|+.+.+.. .+..|.||+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEE
Confidence 78999999999999999984 89999999999999999999999999999999999988742 233566664
No 197
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.77 E-value=6.6e-05 Score=77.39 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=67.1
Q ss_pred CCCeEEEEeeechH----HHHHHhhC-------CCEEEEEeCcHHHHHHHHHHHH----HcC------------------
Q 007525 426 FKDVVCDVFAGVGP----ICIPAAKI-------VKRVYANDLNPYAVDYLERNSV----LNK------------------ 472 (600)
Q Consensus 426 ~ge~VLDlfAGvG~----FaIpaAkk-------g~~V~AvDiNP~Ave~l~eNak----lNg------------------ 472 (600)
++.+|+|+|||+|- +|+.+++. +.+|+|+|+|+.|++.|++++- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999994 56666653 3589999999999999998651 111
Q ss_pred ----CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC------CcchHHHHHHHHHHhcCC
Q 007525 473 ----LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL------PNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 473 ----l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp------P~~a~eFLdaa~~lLk~~ 525 (600)
+.++|++.++|+.+... +.+.||.|++.- +......+..+.++|+++
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 22357888888876421 146799999832 112346889999999986
No 198
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.76 E-value=5.6e-05 Score=76.12 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=71.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHH-HHHHHcCC----------CCcEEEEEcChHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLE-RNSVLNKL----------EKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~-eNaklNgl----------~nrV~~i~gDare~l~~l~ 492 (600)
..++.+||+.+||.|.-.+.+|.+|..|+|+|+++.|++.+. +|.....+ .++|+++++|.+++-..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~-- 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE-- 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence 567789999999999999999999999999999999999984 33221111 13589999999986432
Q ss_pred HhhcCCcccEEEe-----C-CCcchHHHHHHHHHHhcCC
Q 007525 493 ASQKAHKITQVVM-----N-LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 493 ~~~~~~~fD~VVm-----N-pP~~a~eFLdaa~~lLk~~ 525 (600)
..++||.|.= - ||..-..+...+..+++++
T Consensus 113 ---~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 113 ---DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp ---CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred ---hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 1236887761 2 4555568899999999986
No 199
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.70 E-value=4.1e-05 Score=80.59 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=51.5
Q ss_pred CCeEEEEeeechH-HHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEcChH-HHHHHHHHhhcCCcccE
Q 007525 427 KDVVCDVFAGVGP-ICIPAAKI-VKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNMDGR-RFIDAMFASQKAHKITQ 502 (600)
Q Consensus 427 ge~VLDlfAGvG~-FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~gDar-e~l~~l~~~~~~~~fD~ 502 (600)
.-++||+|+|.-. +.|..++. |.+++|.|+++.++++|++|++.| +++++|+++...-. .++..+.. ..+.||.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--ccceeeE
Confidence 3479999999774 46766664 789999999999999999999999 99999998866432 22222221 2468999
Q ss_pred EEeCCCcch
Q 007525 503 VVMNLPNDA 511 (600)
Q Consensus 503 VVmNpP~~a 511 (600)
.++|||..+
T Consensus 181 tmCNPPFy~ 189 (299)
T PF05971_consen 181 TMCNPPFYS 189 (299)
T ss_dssp EEE-----S
T ss_pred EecCCcccc
Confidence 999999864
No 200
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.61 E-value=0.00051 Score=71.23 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=77.7
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
+|+|+|||+|.+++.+...|. .|+|+|+++.|++..+.|.. + .++++|+.++..... ...+|.++++|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~----~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDF----IPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhc----CCCCCEEEeCC
Confidence 589999999999998888876 68999999999999999863 1 156788877653211 24699999999
Q ss_pred CcchH--------------HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--chhHHHHHHHHHhhc
Q 007525 508 PNDAT--------------EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP--EFDFHERIRIALVEV 562 (600)
Q Consensus 508 P~~a~--------------eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~--~~di~eRI~~~L~~~ 562 (600)
|.... ..+-.+.++++.. .|.+-+.+.++.-.. .......+...|...
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~-------~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~ 134 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLFFEIIRILKEK-------KPKYFLLENVKGLLTHDNGNTLKVILNTLEEL 134 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHHHHHHHHHHhc-------CCCEEEEEcCcchhccCchHHHHHHHHHHHhC
Confidence 97421 1233444444432 266778888875321 123344454455443
No 201
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.57 E-value=3.4e-05 Score=82.03 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=66.8
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHH-------HHHHHHHHcCCCC-cEEEEEcChHHHHHHHHHh
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVD-------YLERNSVLNKLEK-KIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave-------~l~eNaklNgl~n-rV~~i~gDare~l~~l~~~ 494 (600)
++++|+.|+|.|.|+|.|-+++|.-|+.|+|-||+-.++. ..+.|.+.-|... -+.++.+|...-.- .
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~--r-- 280 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL--R-- 280 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch--h--
Confidence 4889999999999999999999999999999999999888 3455666667543 35677777654321 1
Q ss_pred hcCCcccEEEeCCCcchHH
Q 007525 495 QKAHKITQVVMNLPNDATE 513 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~a~e 513 (600)
....||.||+|||+...+
T Consensus 281 -sn~~fDaIvcDPPYGVRe 298 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVRE 298 (421)
T ss_pred -hcceeeEEEeCCCcchhh
Confidence 135799999999997543
No 202
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.55 E-value=0.00014 Score=71.74 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc---
Q 007525 427 KDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT--- 501 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD--- 501 (600)
.++|||+|||.|.+-..+|+.| ...+++|.++.|++.|+.-++.++++|.|++.+.|..+- ..+ ..+||
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~----~~qfdlvl 141 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL----SGQFDLVL 141 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc----ccceeEEe
Confidence 3499999999999999999987 369999999999999999999999999999999998763 111 23455
Q ss_pred ------EEEeCC--Ccch-HHHHHHHHHHhcCC
Q 007525 502 ------QVVMNL--PNDA-TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ------~VVmNp--P~~a-~eFLdaa~~lLk~~ 525 (600)
.|=+.| |... .-+++...++|+++
T Consensus 142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred ecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 443332 2221 35788888888875
No 203
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.53 E-value=0.00015 Score=73.71 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=44.3
Q ss_pred ecChhHHHHHHHHhcC---CCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHH-HHHH
Q 007525 409 WNSKLATERQRLLSGF---NFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDY-LERN 467 (600)
Q Consensus 409 ~n~Rl~tEr~Riv~~l---~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~-l~eN 467 (600)
|.+|-..--..+++.+ .+|.+|||+|||+|.|+.+++++|+ +|+|+|+++.++.. +++|
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC
Confidence 4455443335555543 3788999999999999999999974 89999999977765 4444
No 204
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00038 Score=70.05 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=82.2
Q ss_pred eEEEEeeechHHHHHHh-hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEE-EEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 429 VVCDVFAGVGPICIPAA-KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIE-VFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaA-kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~-~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
.||++|||+|+---.+- +.+++|+++|-||.+-+++.+.++.|+-.+ ++ ++.+|+++.. ++ .+.++|.||.-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~-~l----~d~s~DtVV~T 152 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLP-QL----ADGSYDTVVCT 152 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCc-cc----ccCCeeeEEEE
Confidence 47999999997544333 457899999999999999999999997765 66 8999998864 32 25789999875
Q ss_pred CCc----chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 507 LPN----DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 507 pP~----~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+-- ...+.|.++.++|+++ |.+...+-.+++.
T Consensus 153 lvLCSve~~~k~L~e~~rlLRpg--------G~iifiEHva~~y 188 (252)
T KOG4300|consen 153 LVLCSVEDPVKQLNEVRRLLRPG--------GRIIFIEHVAGEY 188 (252)
T ss_pred EEEeccCCHHHHHHHHHHhcCCC--------cEEEEEecccccc
Confidence 532 4568999999999997 5777777777653
No 205
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.50 E-value=0.00013 Score=72.76 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=62.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.-.|.+|||+|+|+|--+|.+|+.|+ .|++.|+.|.+...++.|++.|+++ |.+...|.-. ....+|+
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---------~~~~~Dl 145 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---------SPPAFDL 145 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---------CCcceeE
Confidence 34689999999999999999999985 8999999999999999999999985 7888777643 1457998
Q ss_pred EEeC
Q 007525 503 VVMN 506 (600)
Q Consensus 503 VVmN 506 (600)
++..
T Consensus 146 ~Lag 149 (218)
T COG3897 146 LLAG 149 (218)
T ss_pred EEee
Confidence 8874
No 206
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.41 E-value=0.00021 Score=69.16 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=39.7
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHH
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~e 466 (600)
+++++. -.+|++|||.|||+|+.+++|.+.|.+.+++|++++.++.+++
T Consensus 182 ~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 182 ERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 355544 5789999999999999999999999999999999999998874
No 207
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.38 E-value=0.00071 Score=68.54 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=73.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+..-..|+|+|||.|.-+-.++++ ++.|+|+|.+++|++.++.. +.| +++..+|.+++- +....|
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~-------p~~~~d 94 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK-------PEQPTD 94 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC-------CCCccc
Confidence 345678999999999999999988 57999999999999988543 454 899999999885 245688
Q ss_pred EEEeCC-----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 502 QVVMNL-----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 502 ~VVmNp-----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
+++.|- |.+ .+.+......|.++ |++-|.-
T Consensus 95 llfaNAvlqWlpdH-~~ll~rL~~~L~Pg--------g~LAVQm 129 (257)
T COG4106 95 LLFANAVLQWLPDH-PELLPRLVSQLAPG--------GVLAVQM 129 (257)
T ss_pred hhhhhhhhhhcccc-HHHHHHHHHhhCCC--------ceEEEEC
Confidence 888873 333 35566777777775 5776653
No 208
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.37 E-value=0.00033 Score=71.91 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=75.4
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp 507 (600)
+|+|+|||+|.+++-+.+.|. -|+|+|+++.|.+..+.|.. ...++|+.++-...+. . .+|+++..|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~---~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP---K-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH---H-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc---c-cceEEEecc
Confidence 589999999999999999885 79999999999999999975 6788999887654332 2 499999999
Q ss_pred Ccch-------------H-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--chhHHHHHHHHHhhcc
Q 007525 508 PNDA-------------T-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDP--EFDFHERIRIALVEVA 563 (600)
Q Consensus 508 P~~a-------------~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~--~~di~eRI~~~L~~~~ 563 (600)
|... . ..+..++++++.- -|.+-+.+.++.-.. .....+.+.+.|.+..
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~-------~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lG 134 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL-------KPKYFLLENVPGLLSSKNGEVFKEILEELEELG 134 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH-------S-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTT
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhc-------cceEEEecccceeeccccccccccccccccccc
Confidence 9731 0 1233444444321 145777888874321 1233455555555543
No 209
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.33 E-value=0.0014 Score=69.39 Aligned_cols=93 Identities=12% Similarity=-0.001 Sum_probs=64.4
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.|.+|||+|||.|+++..++..|+ .|+|+|-++..+-..+-=.+.-|.+..+..+. ...+-++. .+.||.|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~------~~~FDtVF 187 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPN------LGAFDTVF 187 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccc------cCCcCEEE
Confidence 689999999999999999999986 79999998887665444333334333233332 33333322 35799887
Q ss_pred e-CCCc---chHHHHHHHHHHhcCC
Q 007525 505 M-NLPN---DATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 m-NpP~---~a~eFLdaa~~lLk~~ 525 (600)
+ .--+ +..+.|..+...++++
T Consensus 188 ~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 188 SMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred EeeehhccCCHHHHHHHHHHhhCCC
Confidence 4 4333 2467889999999876
No 210
>PHA01634 hypothetical protein
Probab=97.32 E-value=0.0006 Score=63.96 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=72.4
Q ss_pred CCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
.+.+|+|+||++|--+|..+-+|+ +|+|+|.+|...+.+++|++.|.+-++..... ++-. .-+.||..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~------~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNG------EYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccc------cCCCcceEE
Confidence 688999999999999999999986 89999999999999999999998755433222 2211 135799999
Q ss_pred eCCCcchHHHHH-HHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 505 MNLPNDATEFLD-AFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 505 mNpP~~a~eFLd-aa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
||--. -.+.|+ ..+.-|+. -.|-+|.|++.
T Consensus 98 iDCeG-CE~~l~v~~l~ky~q---------~ci~ihdwt~n 128 (156)
T PHA01634 98 MDCEG-CEEKLNVSMLKKYKQ---------WCIGIHDWTKN 128 (156)
T ss_pred EEccc-hHHhcCHHHHHHHHh---------heeeeehhhhh
Confidence 99643 233333 12333333 26889999875
No 211
>PRK11524 putative methyltransferase; Provisional
Probab=97.23 E-value=0.00051 Score=71.39 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl 470 (600)
++++.. -.+|++|||.|||+|+.++.|.+.|.+.+|+|++++.++.+++.+..
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 455554 46899999999999999999999999999999999999999998753
No 212
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.12 E-value=0.001 Score=68.03 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCCC--CeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc---C-C----CCcEEEEEcChHHHHHHHHH
Q 007525 424 FNFK--DVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN---K-L----EKKIEVFNMDGRRFIDAMFA 493 (600)
Q Consensus 424 l~~g--e~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN---g-l----~nrV~~i~gDare~l~~l~~ 493 (600)
+++| .+|||+-||-|.=|+-+|..|++|+++|-||.....++..++.. . + ..+++++++|+.+++..
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~--- 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ--- 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC---
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh---
Confidence 3555 48999999999999999988999999999999888877654432 1 1 13699999999999861
Q ss_pred hhcCCcccEEEeCC
Q 007525 494 SQKAHKITQVVMNL 507 (600)
Q Consensus 494 ~~~~~~fD~VVmNp 507 (600)
+...||+|.+||
T Consensus 148 --~~~s~DVVY~DP 159 (234)
T PF04445_consen 148 --PDNSFDVVYFDP 159 (234)
T ss_dssp --HSS--SEEEE--
T ss_pred --cCCCCCEEEECC
Confidence 257899999998
No 213
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.12 E-value=0.0012 Score=66.15 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.....|||+|+|.|.+++.++++ +.+++..|+ |+.++.+++ .++|+++.+|.++-+ +. +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~--------P~-~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL--------PV-AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC--------SS-ES
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhh--------cc-cc
Confidence 556778999999999999999986 469999999 889988888 567999999998432 33 99
Q ss_pred EEEeC-----CC-cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 502 QVVMN-----LP-NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 502 ~VVmN-----pP-~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
.|+|- .| ..+...|..+..+++++ . -+.|.++++.-.++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg-~-----~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPG-K-----DGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEEC-T-----TEEEEEEEEEECSS
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCC-C-----CCeEEEEeeccCCC
Confidence 98873 22 34568899999999864 1 15899998874433
No 214
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0025 Score=66.52 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=79.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|.+||+.|.|+|.++..+|+.- .+++..|....-.+.+.+-.+.-++.++++++.-|+-..--. . ....+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~-~---ks~~a 178 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL-I---KSLKA 178 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc-c---ccccc
Confidence 7899999999999999999999963 599999999999999999999999988899988776331100 0 13579
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|.+|+|+- .+.++.+..+++.+
T Consensus 179 DaVFLDlPaP-w~AiPha~~~lk~~ 202 (314)
T KOG2915|consen 179 DAVFLDLPAP-WEAIPHAAKILKDE 202 (314)
T ss_pred ceEEEcCCCh-hhhhhhhHHHhhhc
Confidence 9999999983 56677777788765
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0052 Score=64.53 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=77.4
Q ss_pred CeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC--C-CCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 428 DVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg--l-~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..||-+|-|-|..+-.+++.. .+++.+||+|..++++++=...-. . +.|++++.+|+.++++.. ..+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CCcCCE
Confidence 499999999999999999986 599999999999999998664422 2 358999999999999752 347999
Q ss_pred EEeCC--C---c---chHHHHHHHHHHhcCC
Q 007525 503 VVMNL--P---N---DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNp--P---~---~a~eFLdaa~~lLk~~ 525 (600)
||+|. | . +..+|++...++|+++
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 99974 2 2 2479999999999986
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.05 E-value=0.0037 Score=62.63 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=58.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHH-------cCC-CCcEEEEEcChHHH--HHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVL-------NKL-EKKIEVFNMDGRRF--IDAM 491 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNakl-------Ngl-~nrV~~i~gDare~--l~~l 491 (600)
+.++++.+|+|||+|-..+.+|.. ++ +++|+|+.+...+.++.+.+. .+. ..++++.++|..+. ...+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 678999999999999999988864 55 699999999999888765543 333 23588899997543 3333
Q ss_pred HHhhcCCcccEEEeCCCcchHHHHHHHHHHhc
Q 007525 492 FASQKAHKITQVVMNLPNDATEFLDAFRGIYR 523 (600)
Q Consensus 492 ~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk 523 (600)
. ...|+|++|--.+..+....+...+.
T Consensus 120 ~-----s~AdvVf~Nn~~F~~~l~~~L~~~~~ 146 (205)
T PF08123_consen 120 W-----SDADVVFVNNTCFDPDLNLALAELLL 146 (205)
T ss_dssp G-----HC-SEEEE--TTT-HHHHHHHHHHHT
T ss_pred h-----cCCCEEEEeccccCHHHHHHHHHHHh
Confidence 2 24799999865555555445544444
No 217
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.04 E-value=0.0095 Score=58.44 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=74.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
...|--|+++|.|+|.|+-.+.++| ..++++|.|++-+..|.+- ..+ +.+++||+.+.-..+. +.++..|
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~-~~ii~gda~~l~~~l~-e~~gq~~ 118 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPG-VNIINGDAFDLRTTLG-EHKGQFF 118 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCC-ccccccchhhHHHHHh-hcCCCee
Confidence 4567789999999999999999987 3799999999999987653 333 7799999988643332 2246779
Q ss_pred cEEEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
|.||..+|-. ..+.|+.+...+..+
T Consensus 119 D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 119 DSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred eeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 9999988763 357788888777654
No 218
>PRK13699 putative methylase; Provisional
Probab=97.04 E-value=0.0012 Score=66.90 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=46.3
Q ss_pred HHHHhc-CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH
Q 007525 418 QRLLSG-FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 418 ~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl 470 (600)
+++++. -.+|++|||.|||+|+.++.+.+.|.+.+|+|++++.++.+.+.++.
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345543 56899999999999999999999999999999999999999888755
No 219
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.02 E-value=0.0013 Score=66.50 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=79.0
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhh
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ 495 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~ 495 (600)
..++++++.+..++|+||--|+.++.+.+.+ ..++|.|+|+-.++.+.+|++.|++..++++.++|+...+.
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~------ 81 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE------ 81 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC------
Confidence 3567778888889999999999999999985 48999999999999999999999999999999999977664
Q ss_pred cCCcccEEEe-CCCcc-hHHHHHHHHHHhc
Q 007525 496 KAHKITQVVM-NLPND-ATEFLDAFRGIYR 523 (600)
Q Consensus 496 ~~~~fD~VVm-NpP~~-a~eFLdaa~~lLk 523 (600)
....+|.|++ ..=.. ..++|++...-++
T Consensus 82 ~~d~~d~ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 82 LEDEIDVIVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred ccCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence 1335776554 33222 2356666555554
No 220
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.02 E-value=0.0063 Score=64.58 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=67.3
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..+|.+++|+-+|-|+.+..+++. .++|+|+|.+|.|++.++++.+.. .+++++++++-.++...+.+. ....+|
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~-~~~~vD 94 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL-LVTKID 94 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc-CCCccc
Confidence 467889999999999999999986 379999999999999999987643 457999999998876544221 134689
Q ss_pred EEEeCCCcc
Q 007525 502 QVVMNLPND 510 (600)
Q Consensus 502 ~VVmNpP~~ 510 (600)
.|++|+=-+
T Consensus 95 gIl~DLGvS 103 (305)
T TIGR00006 95 GILVDLGVS 103 (305)
T ss_pred EEEEeccCC
Confidence 999887543
No 221
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.97 E-value=0.002 Score=69.33 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=65.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.+|.+++|+||+.|+|+-.++++|.+|+|||..+-+ .++.. ..+|+.+.+|+..+.+. ...+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~------~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP------RKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC------CCCCCEE
Confidence 4689999999999999999999999999999966522 22222 23699999999887531 4579999
Q ss_pred EeCCCcchHHHHHHHHHHhcCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~ 525 (600)
++|.-........-+...+..+
T Consensus 275 VcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEecccCHHHHHHHHHHHHhcC
Confidence 9997665545555555566543
No 222
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.93 E-value=0.002 Score=60.19 Aligned_cols=63 Identities=22% Similarity=0.120 Sum_probs=52.2
Q ss_pred CCCCeEEEEeeechHHHHHHhh-----C-CCEEEEEeCcHHHHHHHHHHHHHcC--CCCcEEEEEcChHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAK-----I-VKRVYANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRF 487 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAk-----k-g~~V~AvDiNP~Ave~l~eNaklNg--l~nrV~~i~gDare~ 487 (600)
.+...|+|+|||-|+++..++. . +.+|+|+|.|+..++.+.+.++..+ +..++.+..++..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 5678999999999999999998 4 6799999999999999999998877 544566666655443
No 223
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.91 E-value=0.018 Score=58.74 Aligned_cols=161 Identities=16% Similarity=0.050 Sum_probs=95.0
Q ss_pred ecChhHHHHHHHHhc-----CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEE
Q 007525 409 WNSKLATERQRLLSG-----FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVF 480 (600)
Q Consensus 409 ~n~Rl~tEr~Riv~~-----l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i 480 (600)
||+.-+.=-..+++- +++|..||-+||.+|+..-+.+.. | ..|||+|.+|++.+.|-.=++.- . +|-++
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~-NIiPI 127 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--P-NIIPI 127 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--T-TEEEE
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--C-ceeee
Confidence 777644322333321 678999999999999999999985 3 59999999999999988555442 2 48999
Q ss_pred EcChHHHHHHHHHhhcCCcccEEEeCCC--cchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC----CC-CchhHHH
Q 007525 481 NMDGRRFIDAMFASQKAHKITQVVMNLP--NDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA----RD-PEFDFHE 553 (600)
Q Consensus 481 ~gDare~l~~l~~~~~~~~fD~VVmNpP--~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~----~d-~~~di~e 553 (600)
-+||+.--.... .-+.+|.|+.|-. ..+.-++..+...|+++ | |..-..|+ .. +...+-.
T Consensus 128 l~DAr~P~~Y~~---lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~g---G-------~~~i~iKa~siD~t~~p~~vf~ 194 (229)
T PF01269_consen 128 LEDARHPEKYRM---LVEMVDVIFQDVAQPDQARIAALNARHFLKPG---G-------HLIISIKARSIDSTADPEEVFA 194 (229)
T ss_dssp ES-TTSGGGGTT---TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEE---E-------EEEEEEEHHHH-SSSSHHHHHH
T ss_pred eccCCChHHhhc---ccccccEEEecCCChHHHHHHHHHHHhhccCC---c-------EEEEEEecCcccCcCCHHHHHH
Confidence 999986432110 1347999999964 44556778888888876 2 22222232 11 1112222
Q ss_pred HHHHHHhhcccceEEEEeEEecCC-CcEEEEEEEe
Q 007525 554 RIRIALVEVAVNVEMRRVRLVAPG-KWMLCASFVL 587 (600)
Q Consensus 554 RI~~~L~~~~~~~~v~~VR~VAP~-K~mycvsFrl 587 (600)
...+.|.+ .++.+...-+..|- +.|+++..+.
T Consensus 195 ~e~~~L~~--~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 195 EEVKKLKE--EGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHHHHHHC--TTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred HHHHHHHH--cCCChheEeccCCCCCCcEEEEEEe
Confidence 22223332 24566666677774 5788776553
No 224
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.85 E-value=0.0049 Score=63.29 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=64.0
Q ss_pred CCCeEEEEeeechHHHHHHhh--CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk--kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.|..|+=+|= --..||++|. ...+|+.+|+++..++++++.++..|+. |+++..|.++-++.-+ .++||.+
T Consensus 44 ~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFDVF 116 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BSEE
T ss_pred cCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCCEE
Confidence 5778876662 2355666665 3579999999999999999999999996 9999999999876422 4789999
Q ss_pred EeCCCcchH---HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 504 VMNLPNDAT---EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 504 VmNpP~~a~---eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+.|||++.. -|+.....+|+.. | ..-++.|+..+
T Consensus 117 ~TDPPyT~~G~~LFlsRgi~~Lk~~---g-----~~gy~~~~~~~ 153 (243)
T PF01861_consen 117 FTDPPYTPEGLKLFLSRGIEALKGE---G-----CAGYFGFTHKE 153 (243)
T ss_dssp EE---SSHHHHHHHHHHHHHTB-ST---T------EEEEEE-TTT
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCC---C-----ceEEEEEecCc
Confidence 999999853 5888888888753 2 23355676644
No 225
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.85 E-value=0.0012 Score=57.76 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=41.4
Q ss_pred EEEeeechHHHHHHhhC---C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 431 CDVFAGVGPICIPAAKI---V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk---g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
|++|+..|..++.+++. . .+++++|.++. .+..+++++..++.++++++++|..+.+..+. ..++|.+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence 57888889888877753 2 37999999997 55556666667777779999999999887653 357999999
Q ss_pred CCCcchH---HHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 506 NLPNDAT---EFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 506 NpP~~a~---eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
|-..... ..+..+...++++ ++|.+|.
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~g--------gviv~dD 105 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPG--------GVIVFDD 105 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEE--------EEEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--------eEEEEeC
Confidence 9875433 3444444445543 5777764
No 226
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.82 E-value=0.011 Score=63.96 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=78.7
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC-----CC-CcEEEEEcChHHHHHHHHHh
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK-----LE-KKIEVFNMDGRRFIDAMFAS 494 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg-----l~-nrV~~i~gDare~l~~l~~~ 494 (600)
.++..+.||-+|.|-|--.-.+.|.. .+|+-+|++|.+++.+++|..+-. ++ -++++++.|+..|++..
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a--- 362 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA--- 362 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence 35677899999999999888888874 499999999999999998865433 33 37999999999999763
Q ss_pred hcCCcccEEEeCCCcc---------hHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPND---------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~---------a~eFLdaa~~lLk~~ 525 (600)
...||.||.|+|.- +.+|...+.+.+++.
T Consensus 363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~ 400 (508)
T COG4262 363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAET 400 (508)
T ss_pred --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence 45899999999862 357777777777654
No 227
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.79 E-value=0.0036 Score=64.27 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=72.0
Q ss_pred CCCCC-eEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKD-VVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge-~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..++. .++|+|||+|--++-+|..-.+|+|+|+|+.+++.+++--...-..-...+...+..+++. ..+++|.
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g------~e~SVDl 103 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG------GEESVDL 103 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC------CCcceee
Confidence 34444 8999999999777778877789999999999999877643222111113344444444431 2568998
Q ss_pred EEeCCCc---chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 503 VVMNLPN---DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 503 VVmNpP~---~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|++-=-. .-.+|...+.++|++. | +.|-++++..
T Consensus 104 I~~Aqa~HWFdle~fy~~~~rvLRk~---G----g~iavW~Y~d 140 (261)
T KOG3010|consen 104 ITAAQAVHWFDLERFYKEAYRVLRKD---G----GLIAVWNYND 140 (261)
T ss_pred ehhhhhHHhhchHHHHHHHHHHcCCC---C----CEEEEEEccC
Confidence 8862110 1146889999999986 2 4788887764
No 228
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.78 E-value=0.0073 Score=59.58 Aligned_cols=95 Identities=18% Similarity=0.061 Sum_probs=74.3
Q ss_pred cCCCCC-eEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKD-VVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge-~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
.+.... .++|+|+|-|.=||++|-. ..+|+.+|.+..=+.+++.-+..-+++| ++++++.+.+.. ....
T Consensus 44 ~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~-------~~~~ 115 (184)
T PF02527_consen 44 FLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPE-------YRES 115 (184)
T ss_dssp CS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTT-------TTT-
T ss_pred hhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccc-------cCCC
Confidence 344444 8999999999999998864 3599999999999999999999999996 999999999811 2578
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
||.|++=--.....++.-+..+++++
T Consensus 116 fd~v~aRAv~~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 116 FDVVTARAVAPLDKLLELARPLLKPG 141 (184)
T ss_dssp EEEEEEESSSSHHHHHHHHGGGEEEE
T ss_pred ccEEEeehhcCHHHHHHHHHHhcCCC
Confidence 99999865555557777777777765
No 229
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.72 E-value=0.0019 Score=72.42 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=71.4
Q ss_pred eecChhHHHHHHHHhcC--CCCCeEEEEeeechHHHHHHhhC----C--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEE
Q 007525 408 YWNSKLATERQRLLSGF--NFKDVVCDVFAGVGPICIPAAKI----V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEV 479 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~l--~~ge~VLDlfAGvG~FaIpaAkk----g--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~ 479 (600)
|+.|+...+ -+++.+ .+..+|+|..||+|.|-+.+++. . +..+|.|+|+..+..++-|+-++|+...+..
T Consensus 168 fyTP~~v~~--liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 168 FYTPREVSE--LIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred cCChHHHHH--HHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 455664433 233333 46789999999999999988863 1 5799999999999999999999999743556
Q ss_pred EEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 480 FNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 480 i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
..+|...-.... .......||.|++|||.+.
T Consensus 246 ~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~ 276 (489)
T COG0286 246 RHGDTLSNPKHD-DKDDKGKFDFVIANPPFSG 276 (489)
T ss_pred cccccccCCccc-ccCCccceeEEEeCCCCCc
Confidence 666654322110 0012367999999999974
No 230
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.0029 Score=67.28 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=59.2
Q ss_pred CeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 428 DVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
-+++|+|||+|.+.+-+...|. -+.|+|++|.|++..+.|... ..++.+|..++...... ...+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~---~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALR---KSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhcc---ccCCCEEEeC
Confidence 4799999999999998888885 799999999999999998654 35677888776543221 1168999999
Q ss_pred CCcc
Q 007525 507 LPND 510 (600)
Q Consensus 507 pP~~ 510 (600)
||..
T Consensus 75 pPCQ 78 (328)
T COG0270 75 PPCQ 78 (328)
T ss_pred CCCc
Confidence 9984
No 231
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0038 Score=64.15 Aligned_cols=93 Identities=19% Similarity=0.354 Sum_probs=68.9
Q ss_pred eEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 429 VVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
+|+++|||+|....|+.+- +-+|+|+|-+|.|++..++|...+- .++..+..|...-- +...-..+.+|.|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~--~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPS--LKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchh--ccCCCCcCccceEE
Confidence 7999999999999999984 2589999999999999999988775 34666666653321 11111246788877
Q ss_pred eC------CCcchHHHHHHHHHHhcCC
Q 007525 505 MN------LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 505 mN------pP~~a~eFLdaa~~lLk~~ 525 (600)
|= +|......++...++++++
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 63 3444557889999999986
No 232
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.59 E-value=0.004 Score=65.92 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=67.9
Q ss_pred EEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC
Q 007525 430 VCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 508 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP 508 (600)
|+|+|||+|.+++-+-..|. -|.|+|+++.|++..+.|.. + .++++|+.++...- ...+|+++..||
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEecCC
Confidence 68999999999999988887 57789999999999999852 2 34568888764321 235899999999
Q ss_pred cch-------------H-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 509 NDA-------------T-EFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 509 ~~a-------------~-eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
... . ..+..+.++++.. -|.+-+.+.++.
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~-------~P~~~v~ENV~~ 111 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEK-------KPKFFLLENVKG 111 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhc-------CCCEEEeeccHH
Confidence 631 1 1233445555432 256777777763
No 233
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.58 E-value=0.0092 Score=57.33 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-----HHHHHHhhcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-----IDAMFASQKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~-----l~~l~~~~~~ 497 (600)
.+.+|+|+||+.|+|+-.++.++ .+|+|+|+++. ....+ +..+++|..+. +..... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~~i~~~~~-~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIKDIRKLLP-ESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSHHGGGSHG-TTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHHhhhhhcc-ccc
Confidence 34899999999999999999987 69999999987 22333 66777776432 111111 012
Q ss_pred CcccEEEeCC-C----------cch----HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHH
Q 007525 498 HKITQVVMNL-P----------NDA----TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRI 557 (600)
Q Consensus 498 ~~fD~VVmNp-P----------~~a----~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~ 557 (600)
..+|.|++|- | ... ...+..+...++++ |.+-+=.|..... . .+...+..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~g--------G~~v~K~~~~~~~-~-~~~~~l~~ 154 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPG--------GTFVIKVFKGPEI-E-ELIYLLKR 154 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTT--------EEEEEEESSSTTS-H-HHHHHHHH
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCC--------CEEEEEeccCccH-H-HHHHHHHh
Confidence 5899999997 1 111 23455666777775 4555555553332 2 44444443
No 234
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0071 Score=61.12 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=75.3
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcC--------C-CCcEEEEEcChHHHHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNK--------L-EKKIEVFNMDGRRFID 489 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNg--------l-~nrV~~i~gDare~l~ 489 (600)
.+.+|-..||+|+|+|+++-.+|+. |..+.++|.-|+.+++.++|+..-- + ..++.++.||++..-.
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 4789999999999999999988863 3445999999999999999997642 2 1347888999987643
Q ss_pred HHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 490 AMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 490 ~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...+||+|-+. +.+.+...++...|+++
T Consensus 159 ------e~a~YDaIhvG--Aaa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 159 ------EQAPYDAIHVG--AAASELPQELLDQLKPG 186 (237)
T ss_pred ------ccCCcceEEEc--cCccccHHHHHHhhccC
Confidence 24689999998 55566777788888875
No 235
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.48 E-value=0.0038 Score=63.55 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=63.3
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe-
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM- 505 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm- 505 (600)
..-|||++||+|--+-.+...|...+++||+|.|++.+.+ -+ +++ .++.+|.-+-++- ..++||-+|.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e---~eg--dlil~DMG~Glpf-----rpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-RE---LEG--DLILCDMGEGLPF-----RPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hh---hhc--CeeeeecCCCCCC-----CCCccceEEEe
Confidence 5689999999999998888889999999999999999987 22 222 4667776665532 3578998773
Q ss_pred -------C------CCcc-hHHHHHHHHHHhcCC
Q 007525 506 -------N------LPND-ATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 -------N------pP~~-a~eFLdaa~~lLk~~ 525 (600)
| -|.. -..|...+..+++.+
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 1 1221 235666677777765
No 236
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.42 E-value=0.02 Score=57.95 Aligned_cols=128 Identities=11% Similarity=0.048 Sum_probs=75.4
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
..++-+|.|+|||-+.+|-.. ..+.+|+..|+... | .. ++.+|.....- ..+.+|++
T Consensus 70 ~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n---~~--Vtacdia~vPL------~~~svDv~ 126 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N---PR--VTACDIANVPL------EDESVDVA 126 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S---TT--EEES-TTS-S--------TT-EEEE
T ss_pred cCCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C---CC--EEEecCccCcC------CCCceeEE
Confidence 345679999999999999433 34568999999752 2 22 45677766542 25789999
Q ss_pred EeCCCcc---hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEEecCCCcE
Q 007525 504 VMNLPND---ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRLVAPGKWM 580 (600)
Q Consensus 504 VmNpP~~---a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~VAP~K~m 580 (600)
|.-+--. -..||.++.++|+++ |.+.+.+-.-.-+. +...+ .....+++..+..-..+++.
T Consensus 127 VfcLSLMGTn~~~fi~EA~RvLK~~--------G~L~IAEV~SRf~~-------~~~F~-~~~~~~GF~~~~~d~~n~~F 190 (219)
T PF05148_consen 127 VFCLSLMGTNWPDFIREANRVLKPG--------GILKIAEVKSRFEN-------VKQFI-KALKKLGFKLKSKDESNKHF 190 (219)
T ss_dssp EEES---SS-HHHHHHHHHHHEEEE--------EEEEEEEEGGG-S--------HHHHH-HHHHCTTEEEEEEE--STTE
T ss_pred EEEhhhhCCCcHHHHHHHHheeccC--------cEEEEEEecccCcC-------HHHHH-HHHHHCCCeEEecccCCCeE
Confidence 9876443 258999999999986 68999887543221 11111 22234567777777889999
Q ss_pred EEEEEEeccc
Q 007525 581 LCASFVLPES 590 (600)
Q Consensus 581 ycvsFrlp~~ 590 (600)
+-+.|+....
T Consensus 191 ~~f~F~K~~~ 200 (219)
T PF05148_consen 191 VLFEFKKIRK 200 (219)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEEcCc
Confidence 9999998753
No 237
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.061 Score=54.58 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=82.0
Q ss_pred CCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc-ccEE
Q 007525 427 KDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK-ITQV 503 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~-fD~V 503 (600)
+.+++|+|+|.|.=|||+|-. ..+|+-+|.+..-+.+++.=++.-+++| ++++++.+.++-.+ .. ||.|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~-------~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE-------KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc-------cccCcEE
Confidence 689999999999999998842 4579999999999999999999999997 99999999998532 23 9998
Q ss_pred EeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 007525 504 VMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARD 546 (600)
Q Consensus 504 VmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d 546 (600)
+.=--+......+-...+++.+ |.+-.|-|.+..+
T Consensus 140 tsRAva~L~~l~e~~~pllk~~--------g~~~~~k~~~~~~ 174 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVG--------GGFLAYKGLAGKD 174 (215)
T ss_pred EeehccchHHHHHHHHHhcccC--------CcchhhhHHhhhh
Confidence 8765554455666667777764 3566666766544
No 238
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.16 E-value=0.021 Score=54.41 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=60.0
Q ss_pred EEEeCcHHHHHHHHHHHHHcC--CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc----chHHHHHHHHHHhcCC
Q 007525 452 YANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 452 ~AvDiNP~Ave~l~eNaklNg--l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
+|+|+++++++.++++.+..+ ..++++++++|+.+..- ..+.||.|++..-- ...+++.++.++|+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 489999999999988765432 22359999999987631 24689999986411 2357899999999987
Q ss_pred CCCCCCCccEEEEEeccCCC
Q 007525 526 PEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 526 ~~~g~~~~p~IHvY~F~k~~ 545 (600)
|.+.+.+|.+.+
T Consensus 75 --------G~l~i~d~~~~~ 86 (160)
T PLN02232 75 --------SRVSILDFNKSN 86 (160)
T ss_pred --------eEEEEEECCCCC
Confidence 688889988643
No 239
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.99 E-value=0.074 Score=56.86 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=73.5
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhh------CCCEEEEEeCcHHHHHHHHHHHHHcCCCC-cEEEEEcChHHHHHH
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAK------IVKRVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDA 490 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAk------kg~~V~AvDiNP~Ave~l~eNaklNgl~n-rV~~i~gDare~l~~ 490 (600)
..|+..+.++..++|+|||.|.=+-.+.. +...-+++|++.++++.+..++..-.+.+ .|..+++|-.+.+..
T Consensus 68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW 147 (319)
T ss_pred HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh
Confidence 35666688888999999999987443322 24689999999999999999998544543 255599998887653
Q ss_pred HHHhhcCCcccEEEe------C-CCcchHHHHHHHHH-HhcCC
Q 007525 491 MFASQKAHKITQVVM------N-LPNDATEFLDAFRG-IYRDR 525 (600)
Q Consensus 491 l~~~~~~~~fD~VVm------N-pP~~a~eFLdaa~~-lLk~~ 525 (600)
+...........++. | .|..+..||..+.+ .+.++
T Consensus 148 l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 148 LKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred cccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 321001122333332 3 34457789999998 88765
No 240
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.38 Score=48.75 Aligned_cols=163 Identities=20% Similarity=0.170 Sum_probs=103.2
Q ss_pred ecChhHHHHHHHHhc-----CCCCCeEEEEeeechHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE
Q 007525 409 WNSKLATERQRLLSG-----FNFKDVVCDVFAGVGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481 (600)
Q Consensus 409 ~n~Rl~tEr~Riv~~-----l~~ge~VLDlfAGvG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~ 481 (600)
||++-+.--..+++- +++|+.||=|||-+|+..-+.+.. | ..|||+|.+|.....|..=++. .+++-++.
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL 130 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPIL 130 (231)
T ss_pred eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeee
Confidence 777644322334432 679999999999999999999986 4 5899999999999988877665 23588999
Q ss_pred cChHHHHHHHHHhhcCCcccEEEeCC--CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC--CCCCchhHHHHHHH
Q 007525 482 MDGRRFIDAMFASQKAHKITQVVMNL--PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK--ARDPEFDFHERIRI 557 (600)
Q Consensus 482 gDare~l~~l~~~~~~~~fD~VVmNp--P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k--~~d~~~di~eRI~~ 557 (600)
+||+.--.... .-+.+|.|..|- |..+.=+...+...|+++ | ..+|-+=.-+= ..++. .+-++--.
T Consensus 131 ~DA~~P~~Y~~---~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~---G---~~~i~iKArSIdvT~dp~-~vf~~ev~ 200 (231)
T COG1889 131 EDARKPEKYRH---LVEKVDVIYQDVAQPNQAEILADNAEFFLKKG---G---YVVIAIKARSIDVTADPE-EVFKDEVE 200 (231)
T ss_pred cccCCcHHhhh---hcccccEEEEecCCchHHHHHHHHHHHhcccC---C---eEEEEEEeecccccCCHH-HHHHHHHH
Confidence 99976432211 135689999886 555666778888888876 2 01333322221 12222 22221112
Q ss_pred HHhhcccceEEEEeEEecCC-CcEEEEEEE
Q 007525 558 ALVEVAVNVEMRRVRLVAPG-KWMLCASFV 586 (600)
Q Consensus 558 ~L~~~~~~~~v~~VR~VAP~-K~mycvsFr 586 (600)
.|.+ ..+++..+.+..|- +.|+.+..+
T Consensus 201 kL~~--~~f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 201 KLEE--GGFEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred HHHh--cCceeeEEeccCCcccceEEEEEe
Confidence 2322 23566777777774 567766543
No 241
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.97 E-value=0.023 Score=63.59 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHH------------HHH
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA------------MFA 493 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~------------l~~ 493 (600)
.-+++|+|||+|++++-+-..|. -|.|+|+++.|.+..+.|... -. ...++++|..++... ...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CC-ccceeccChhhCccccccccchhhhhhhhh
Confidence 34899999999999999877775 689999999999999988421 11 134556666655210 000
Q ss_pred hhcCCcccEEEeCCCcc
Q 007525 494 SQKAHKITQVVMNLPND 510 (600)
Q Consensus 494 ~~~~~~fD~VVmNpP~~ 510 (600)
. ....+|+++..||..
T Consensus 165 ~-~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 165 Q-HIPDHDVLLAGFPCQ 180 (467)
T ss_pred c-cCCCCCEEEEcCCCC
Confidence 0 012589999999974
No 242
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.89 E-value=0.051 Score=58.22 Aligned_cols=106 Identities=13% Similarity=0.003 Sum_probs=75.9
Q ss_pred HHHh-cCCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCC-----cEEEEEcChHHH-HHH
Q 007525 419 RLLS-GFNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEK-----KIEVFNMDGRRF-IDA 490 (600)
Q Consensus 419 Riv~-~l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~n-----rV~~i~gDare~-l~~ 490 (600)
.+++ ..++++.++||+||-|+=.+-.-+.| ...+++||...+++.+++..+..+-.. .+.++.+|.... +..
T Consensus 109 ~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d 188 (389)
T KOG1975|consen 109 VLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD 188 (389)
T ss_pred HHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH
Confidence 3444 36789999999999999999888877 489999999999999998765432111 278999998754 333
Q ss_pred HHHhhcCCcccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 491 MFASQKAHKITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
+.+. ...+||+|=+-.-. .+.-+|..+.+.|+++
T Consensus 189 ~~e~-~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 189 LLEF-KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred hccC-CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 3321 23449987654322 2445788888888886
No 243
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.76 E-value=0.033 Score=59.29 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH
Q 007525 411 SKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI 488 (600)
Q Consensus 411 ~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l 488 (600)
|-+..|--..+. ..++.+++|+-.|.|+.+..++++ +++|+|+|.+|+|++.++++++.. .+++.+++++-.++.
T Consensus 6 PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 6 PVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLD 82 (310)
T ss_dssp -TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHH
T ss_pred cccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHH
Confidence 334445433333 567889999999999999999986 479999999999999998876533 567999999987776
Q ss_pred HHHHHhhcCCcccEEEeCCCcchHH
Q 007525 489 DAMFASQKAHKITQVVMNLPNDATE 513 (600)
Q Consensus 489 ~~l~~~~~~~~fD~VVmNpP~~a~e 513 (600)
..+........+|-|++|+=-++.+
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGvSS~Q 107 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGVSSMQ 107 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S--HHH
T ss_pred HHHHHccCCCccCEEEEccccCHHH
Confidence 5443221245799999998665443
No 244
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.75 E-value=0.022 Score=61.02 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=66.6
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHc---------CCCCcEEEEEcChHHH-HHHHHHh
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLN---------KLEKKIEVFNMDGRRF-IDAMFAS 494 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklN---------gl~nrV~~i~gDare~-l~~l~~~ 494 (600)
++..|||||||-|+-..=..+.+ ..++|+|++..+++.+++..+.. +..=...++.+|+... +...+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 78999999999999777666655 69999999999999999988321 1111367889998642 2211110
Q ss_pred hcCCcccEEEeCCCc--------chHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPN--------DATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~--------~a~eFLdaa~~lLk~~ 525 (600)
....||+|-|-.-- .+..+|..+...|+++
T Consensus 142 -~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 142 -RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp -TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred -cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 12489988875421 2557899999999986
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.11 Score=52.35 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~ 498 (600)
+.+|.+|+|+||--|.++-.++++. ..|+|+|+.|-.. +.+ |.++++|..+- ...+...-...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 7899999999999999999999873 3599999998532 344 88999987542 22222211234
Q ss_pred cccEEEeCCCc--ch-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHHHHhhcc
Q 007525 499 KITQVVMNLPN--DA-------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRIALVEVA 563 (600)
Q Consensus 499 ~fD~VVmNpP~--~a-------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~~L~~~~ 563 (600)
.+|+|+.|+-. +. ...++-+...++++ |..-+=.|..++. .++...+++.... .
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~--------G~fv~K~fqg~~~--~~~l~~~~~~F~~-v 179 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG--------GSFVAKVFQGEDF--EDLLKALRRLFRK-V 179 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC--------CeEEEEEEeCCCH--HHHHHHHHHhhce-e
Confidence 47999976532 11 12345556666664 4566666665433 2444444433221 1
Q ss_pred cceEEEEeEEecCCCcEEEEEE
Q 007525 564 VNVEMRRVRLVAPGKWMLCASF 585 (600)
Q Consensus 564 ~~~~v~~VR~VAP~K~mycvsF 585 (600)
......--|+.|+-.+-+|..|
T Consensus 180 ~~~KP~aSR~~S~E~y~v~~~~ 201 (205)
T COG0293 180 KIFKPKASRKRSREIYLVAKGF 201 (205)
T ss_pred EEecCccccCCCceEEEEEecc
Confidence 1111122355555444445444
No 246
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=95.48 E-value=0.015 Score=60.02 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=46.3
Q ss_pred HHHHHHHHhc-CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHH
Q 007525 414 ATERQRLLSG-FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 414 ~tEr~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNakl 470 (600)
..+|.++++. .-.+..+||+||-.|..++.+|+. |+ .|+|+||++..++.|++|++.
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 3445444432 445678999999999999999997 54 899999999999999999864
No 247
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.40 E-value=0.021 Score=63.07 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=50.8
Q ss_pred eEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 007525 429 VVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD 483 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD 483 (600)
.|||+++|+|-+++.|++.|+ .|+|+|.-.-+.+.|++-...||.+++|.+++.-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 589999999999999999876 9999999999999999999999999888887753
No 248
>PRK00536 speE spermidine synthase; Provisional
Probab=95.36 E-value=0.19 Score=52.40 Aligned_cols=91 Identities=8% Similarity=-0.101 Sum_probs=69.5
Q ss_pred CCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH--cCCCC-cEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVL--NKLEK-KIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl--Ngl~n-rV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..-++||=+|.|-|..+-.++|...+|+.|||+++.++.+++-.-. .+++| |++++. +..+ ...++||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~----~~~~~fD 141 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLD----LDIKKYD 141 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhh----ccCCcCC
Confidence 4558999999999999999999877999999999999999982211 13433 688775 1211 1136899
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+||+|... ..+|.....++|+++
T Consensus 142 VIIvDs~~-~~~fy~~~~~~L~~~ 164 (262)
T PRK00536 142 LIICLQEP-DIHKIDGLKRMLKED 164 (262)
T ss_pred EEEEcCCC-ChHHHHHHHHhcCCC
Confidence 99999433 368999999999986
No 249
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.33 E-value=0.23 Score=51.79 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=70.7
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
....+||+|||-|..+..+|..-.+|+|.|+|+.|...|++ -|. +++ |..++-. .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~------~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQ------TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhc------cCCceEEEee
Confidence 45789999999999999999888899999999999776664 333 333 2223321 1457998876
Q ss_pred -CCCc---chHHHHHHHHHHhcCCCCC-CCCCccEEEEEeccC
Q 007525 506 -NLPN---DATEFLDAFRGIYRDRPED-AKFTFPKIHLYGFSK 543 (600)
Q Consensus 506 -NpP~---~a~eFLdaa~~lLk~~~~~-g~~~~p~IHvY~F~k 543 (600)
|.-. .....|..+...++++..- -..-+|+-|+.++..
T Consensus 158 LNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~ 200 (265)
T PF05219_consen 158 LNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGG 200 (265)
T ss_pred hhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCC
Confidence 4432 3357889999999885100 012247778888865
No 250
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.23 E-value=0.058 Score=51.36 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=57.7
Q ss_pred EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC---Cc----------chHHHHH
Q 007525 450 RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL---PN----------DATEFLD 516 (600)
Q Consensus 450 ~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp---P~----------~a~eFLd 516 (600)
+|||.||.++|++..++.++.+++.++|++++..=..+... .. .+.+|.++.|+ |. +....|+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~-i~---~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY-IP---EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh-Cc---cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 69999999999999999999999988899998765554322 21 24799999996 43 2457889
Q ss_pred HHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 517 AFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 517 aa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.++.+|+++ |+|-+.++..
T Consensus 77 ~al~lL~~g--------G~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPG--------GIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEE--------EEEEEEE--S
T ss_pred HHHHhhccC--------CEEEEEEeCC
Confidence 999999886 5666666554
No 251
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.12 Score=53.39 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=72.5
Q ss_pred eecChhHHHH-HHHHhc---CCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEE-E
Q 007525 408 YWNSKLATER-QRLLSG---FNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVF-N 481 (600)
Q Consensus 408 y~n~Rl~tEr-~Riv~~---l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i-~ 481 (600)
.|.+|-. .+ ..+++. ..+|.++||+||-+|+|+-.+..+|+ +|||+|..-.-+.+=-+| +.+|..+ +
T Consensus 58 ~yVSRG~-~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~ 130 (245)
T COG1189 58 PYVSRGG-LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLER 130 (245)
T ss_pred CccccHH-HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEec
Confidence 4556633 33 444543 45899999999999999999999975 999999976554442221 2244444 4
Q ss_pred cChHHHHHHHHHhhcCCcccEEEeCCCcchH-HHHHHHHHHhcCC
Q 007525 482 MDGRRFIDAMFASQKAHKITQVVMNLPNDAT-EFLDAFRGIYRDR 525 (600)
Q Consensus 482 gDare~l~~l~~~~~~~~fD~VVmNpP~~a~-eFLdaa~~lLk~~ 525 (600)
.+++.+....+ .+..|.+++|.-..+. ..|..+..+++++
T Consensus 131 tN~r~l~~~~~----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~ 171 (245)
T COG1189 131 TNVRYLTPEDF----TEKPDLIVIDVSFISLKLILPALLLLLKDG 171 (245)
T ss_pred CChhhCCHHHc----ccCCCeEEEEeehhhHHHHHHHHHHhcCCC
Confidence 56665544332 3478999999876543 5678888888764
No 252
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.022 Score=54.97 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=58.9
Q ss_pred HHHHhcCC--CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH
Q 007525 418 QRLLSGFN--FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 487 (600)
Q Consensus 418 ~Riv~~l~--~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~ 487 (600)
+.+++++. +....+|+|+|-|.+.+.+|+.| ...+++|+||+.+.+.+-.+-+.++...+.+...|...+
T Consensus 62 ~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 62 ENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 34555533 44689999999999999999998 489999999999999999999999988788888777665
No 253
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.01 E-value=0.029 Score=60.76 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCC------EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH-Hhh-
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVK------RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF-ASQ- 495 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~------~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~-~~~- 495 (600)
+++|++||||||--|.=++.+....+ .|+|||.++.=...+++-++.-.-.+ +.+.+.|+..+..... ..+
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~-~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN-LLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-eeeecccceeccccccccCch
Confidence 68999999999999988876665422 89999999999999998885544443 6666777655532211 000
Q ss_pred -cCCcccEEEeCCCcc
Q 007525 496 -KAHKITQVVMNLPND 510 (600)
Q Consensus 496 -~~~~fD~VVmNpP~~ 510 (600)
....||.|++|-|.+
T Consensus 232 ~~~~~fDrVLvDVPCS 247 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCS 247 (375)
T ss_pred hhhhhcceeEEecccC
Confidence 135799999999984
No 254
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.96 E-value=0.044 Score=55.78 Aligned_cols=62 Identities=27% Similarity=0.298 Sum_probs=44.4
Q ss_pred cChhHHHH-HHHHhcC-CC-CCeEEEEeeechHHHHHHhh--CC--CEEEEEeCcHHHHHHHHHHHHHc
Q 007525 410 NSKLATER-QRLLSGF-NF-KDVVCDVFAGVGPICIPAAK--IV--KRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 410 n~Rl~tEr-~Riv~~l-~~-ge~VLDlfAGvG~FaIpaAk--kg--~~V~AvDiNP~Ave~l~eNaklN 471 (600)
--|+..|- +|.+..+ .. .-++.|.|||.|++.--++- .. ..|+|-|+|+++++++++|+.+-
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 35778887 6776654 22 34799999999998665553 22 48999999999999999998754
No 255
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.87 E-value=0.066 Score=60.20 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=67.8
Q ss_pred eeeecChhHHHH-HHHHhc-CCCCCeEEEEeeechHHHHHHhhC---C---CEEEEEeCcHHHHHHHHHHHHHcCCCC-c
Q 007525 406 TIYWNSKLATER-QRLLSG-FNFKDVVCDVFAGVGPICIPAAKI---V---KRVYANDLNPYAVDYLERNSVLNKLEK-K 476 (600)
Q Consensus 406 kfy~n~Rl~tEr-~Riv~~-l~~ge~VLDlfAGvG~FaIpaAkk---g---~~V~AvDiNP~Ave~l~eNaklNgl~n-r 476 (600)
.+|+.++...+- .+++.. ..++..|.|++||+|.|-+.+.+. | ..+++.|+++.++..++.|+.++++.. .
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t 274 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYAN 274 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccc
Confidence 455666654433 233332 336689999999999999876542 2 369999999999999999999888742 2
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
....++|...-... . ....||.|++|||...
T Consensus 275 ~~~~~~dtl~~~d~-~---~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 275 FNIINADTLTTKEW-E---NENGFEVVVSNPPYSI 305 (501)
T ss_pred cCcccCCcCCCccc-c---ccccCCEEeecCCccc
Confidence 33444543221110 0 1346999999999853
No 256
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.82 E-value=0.11 Score=52.85 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=71.7
Q ss_pred CCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
...+.||+|||+|..+-.+... ..+|-.+|.++.-++.|++.+..++- ...++++.-..+|.+. ..+||.|-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P~------~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTPE------EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccCC------CCcEeEEE
Confidence 3568999999999999877654 56999999999999999987655221 2367899999988753 46899998
Q ss_pred eCCCc------chHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 505 MNLPN------DATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 505 mNpP~------~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
+.--- .-.+||......|+++ |+|.+=+....
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~--------G~IvvKEN~~~ 165 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPN--------GVIVVKENVSS 165 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEE--------EEEEEEEEEES
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCC--------cEEEEEecCCC
Confidence 75432 1257888888888875 68888877643
No 257
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.69 E-value=0.14 Score=54.20 Aligned_cols=97 Identities=16% Similarity=0.088 Sum_probs=71.0
Q ss_pred CCCeEEEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
..-+|+|+.||.|..-+-+... ...|.-.|.+|..++..++-++.+|+++.+++.++||++.-.. .+ ....++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l-~~--l~p~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL-AA--LDPAPT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh-hc--cCCCCC
Confidence 3457999999999999888764 2489999999999999999999999998669999999986322 11 134467
Q ss_pred EEEe-CC----Ccch--HHHHHHHHHHhcCC
Q 007525 502 QVVM-NL----PNDA--TEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVm-Np----P~~a--~eFLdaa~~lLk~~ 525 (600)
++|+ .+ |... ...|.-+..++.++
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 7665 22 3221 23456666666664
No 258
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.61 E-value=0.019 Score=58.93 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=65.9
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
-.+++|+|||+|-++.++-....+.+++|||..|++.+.+. ++-+ ..+++|+..|++.. ..++||.|+.-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~DLi~Aa 195 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFDLIVAA 195 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCcccchhhh
Confidence 47999999999999999988888999999999999877653 3422 45667777776532 25789988752
Q ss_pred --CCcch--HHHHHHHHHHhcCC
Q 007525 507 --LPNDA--TEFLDAFRGIYRDR 525 (600)
Q Consensus 507 --pP~~a--~eFLdaa~~lLk~~ 525 (600)
+|+.. ..++..+.+++.++
T Consensus 196 DVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 196 DVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred hHHHhhcchhhHHHHHHHhcCCC
Confidence 34422 34667778888775
No 259
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.56 E-value=0.12 Score=53.47 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=54.4
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
+...+...++|+|++||-=|++++.... +..++|.||+..+++.+..=+..-++.. ++...|...-. +.
T Consensus 99 if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~--~~~v~Dl~~~~-------~~ 169 (251)
T PF07091_consen 99 IFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPH--DARVRDLLSDP-------PK 169 (251)
T ss_dssp HCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CE--EEEEE-TTTSH-------TT
T ss_pred HHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCc--ceeEeeeeccC-------CC
Confidence 4444566789999999999999998876 3699999999999999999998888864 55555554432 34
Q ss_pred CcccEEEe
Q 007525 498 HKITQVVM 505 (600)
Q Consensus 498 ~~fD~VVm 505 (600)
...|+.++
T Consensus 170 ~~~DlaLl 177 (251)
T PF07091_consen 170 EPADLALL 177 (251)
T ss_dssp SEESEEEE
T ss_pred CCcchhhH
Confidence 56787665
No 260
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=94.30 E-value=0.036 Score=55.77 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=34.4
Q ss_pred HHHhcCC--CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHH
Q 007525 419 RLLSGFN--FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLE 465 (600)
Q Consensus 419 Riv~~l~--~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~ 465 (600)
.|.+.+. ...+++|+|||.|..++.++..+..|+++|+|+..+...+
T Consensus 11 ~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 11 WIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp HHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 4555565 6899999999999999988878889999999999887666
No 261
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.29 E-value=0.15 Score=53.73 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 426 FKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
.|..|+=+| ----++|++|-- ..+|..+||+...++..++-++.-|+.| ++.+.-|.+.-+++-+ ..+||++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kFDvf 225 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKFDVF 225 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhCCee
Confidence 355677776 566778888765 4699999999999999999999999987 9999999998776544 3689999
Q ss_pred EeCCCcch---HHHHHHHHHHhcCC
Q 007525 504 VMNLPNDA---TEFLDAFRGIYRDR 525 (600)
Q Consensus 504 VmNpP~~a---~eFLdaa~~lLk~~ 525 (600)
+.|||.+. ..||..-...|+..
T Consensus 226 iTDPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 226 ITDPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred ecCchhhHHHHHHHHhccHHHhcCC
Confidence 99999974 24666666666654
No 262
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=93.93 E-value=0.15 Score=51.32 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=77.8
Q ss_pred CCCCCe-EEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHH--HhhcCC
Q 007525 424 FNFKDV-VCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF--ASQKAH 498 (600)
Q Consensus 424 l~~ge~-VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~--~~~~~~ 498 (600)
+..... ||+++||+|-.+...|+. ...=.--|.++.....++..+...++.|-...+..|+.+-.-... ......
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 555565 999999999999999986 357778899999999999999988888755667777754311000 000134
Q ss_pred cccEEEe-CC-----CcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVM-NL-----PNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVm-Np-----P~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.||.|++ |. ...+..++..+.++|+++ |.+-+|.
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g--------G~L~~YG 141 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPG--------GLLFLYG 141 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCC--------CEEEEeC
Confidence 7898885 43 223456778888888875 5788884
No 263
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.68 E-value=0.5 Score=49.57 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
-....+|.|+|||-+-+|. +...+|++.|+-+ +. -.++.+|.+...- .+++.|++
T Consensus 178 r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a--------------~~--~~V~~cDm~~vPl------~d~svDva 232 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA--------------VN--ERVIACDMRNVPL------EDESVDVA 232 (325)
T ss_pred CcCceEEEecccchhhhhh---ccccceeeeeeec--------------CC--CceeeccccCCcC------ccCcccEE
Confidence 3456789999999998876 4446899999864 32 2566788877542 26789999
Q ss_pred EeCCCcc---hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHHH--HHhhcccceEEEEeEEecCCC
Q 007525 504 VMNLPND---ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIRI--ALVEVAVNVEMRRVRLVAPGK 578 (600)
Q Consensus 504 VmNpP~~---a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~~--~L~~~~~~~~v~~VR~VAP~K 578 (600)
|.-+--. -..|+.++.++|+.+ |.+.+-+.. .|+.. .+...+..++|.....---++
T Consensus 233 V~CLSLMgtn~~df~kEa~RiLk~g--------G~l~IAEv~----------SRf~dv~~f~r~l~~lGF~~~~~d~~n~ 294 (325)
T KOG3045|consen 233 VFCLSLMGTNLADFIKEANRILKPG--------GLLYIAEVK----------SRFSDVKGFVRALTKLGFDVKHKDVSNK 294 (325)
T ss_pred EeeHhhhcccHHHHHHHHHHHhccC--------ceEEEEehh----------hhcccHHHHHHHHHHcCCeeeehhhhcc
Confidence 9766432 358999999999987 345443332 22221 111122234444444444567
Q ss_pred cEEEEEEEecc
Q 007525 579 WMLCASFVLPE 589 (600)
Q Consensus 579 ~mycvsFrlp~ 589 (600)
+++.+.|..+.
T Consensus 295 ~F~lfefkK~~ 305 (325)
T KOG3045|consen 295 YFTLFEFKKTP 305 (325)
T ss_pred eEEEEEEecCC
Confidence 88888888754
No 264
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.65 E-value=0.58 Score=49.92 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..++.+.+|+--|-|+.+-.+.++. ++++|+|.+|.|++.+++....++ +++.++++.-.++...+... ...++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~-~i~~v 97 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL-GIGKV 97 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc-CCCce
Confidence 5678999999999999999998874 589999999999999999988766 46999999877765543322 24578
Q ss_pred cEEEeCCCcc
Q 007525 501 TQVVMNLPND 510 (600)
Q Consensus 501 D~VVmNpP~~ 510 (600)
|-|++|+=-+
T Consensus 98 DGiL~DLGVS 107 (314)
T COG0275 98 DGILLDLGVS 107 (314)
T ss_pred eEEEEeccCC
Confidence 9999988543
No 265
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.28 E-value=0.18 Score=51.76 Aligned_cols=50 Identities=26% Similarity=0.241 Sum_probs=45.3
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
.-.+|++|+|.|+|+|+.++.+...|...+++|++++.++.+.+.+..+.
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 36689999999999999999999999999999999999999999887654
No 266
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.94 E-value=1 Score=37.32 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=56.8
Q ss_pred EEEEeeechHHH--HHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-HHHHHHhhcC-CcccEEEe
Q 007525 430 VCDVFAGVGPIC--IPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKA-HKITQVVM 505 (600)
Q Consensus 430 VLDlfAGvG~Fa--IpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~-l~~l~~~~~~-~~fD~VVm 505 (600)
++|++||.|... ......+..++++|+++.++...+......+... +.++.+|.... +. + .. ..+|.+.+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~---~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLP--F---EDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCC--C---CCCCceeEEee
Confidence 999999999965 2222223589999999999999554443322221 67777777652 21 1 11 36888844
Q ss_pred CCCcc---hHHHHHHHHHHhcCC
Q 007525 506 NLPND---ATEFLDAFRGIYRDR 525 (600)
Q Consensus 506 NpP~~---a~eFLdaa~~lLk~~ 525 (600)
..... ....+..+.+.++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~ 148 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPG 148 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCC
Confidence 33321 256778888888764
No 267
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.94 E-value=0.34 Score=50.15 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=61.3
Q ss_pred EEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 431 CDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
+..|.|+=.++..+.+...+.+++|+.|..++.|++|+... .+|.+.+.|+++.+..++. +..+=-.|++|||+-
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allP--P~~rRglVLIDPpYE 136 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLP--PPERRGLVLIDPPYE 136 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S---TTS-EEEEE-----
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCC--CCCCCeEEEECCCCC
Confidence 78999999999999988889999999999999999997653 3699999999999887763 234455899999985
Q ss_pred hH----HHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 511 AT----EFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 511 a~----eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.. ...+.+..+++.-.. | -++-+|=..
T Consensus 137 ~~~dy~~v~~~l~~a~kR~~~-G----~~~iWYPi~ 167 (245)
T PF04378_consen 137 QKDDYQRVVDALAKALKRWPT-G----VYAIWYPIK 167 (245)
T ss_dssp STTHHHHHHHHHHHHHHH-TT-S----EEEEEEEES
T ss_pred CchHHHHHHHHHHHHHHhcCC-c----EEEEEeecc
Confidence 32 345555666654321 1 356677654
No 268
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.05 E-value=1.6 Score=44.03 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC---CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHH--HHHHHhhcC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFI--DAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg---~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l--~~l~~~~~~ 497 (600)
+.++++|||+||-.|.++--|-++. ..|+++||-+-. -+.+ +.++++ |..+-. ..+++.-+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 6789999999999999999888863 589999986421 2333 566666 665432 233433356
Q ss_pred CcccEEEeCCC
Q 007525 498 HKITQVVMNLP 508 (600)
Q Consensus 498 ~~fD~VVmNpP 508 (600)
..+|.|+.|.-
T Consensus 135 r~VdvVlSDMa 145 (232)
T KOG4589|consen 135 RPVDVVLSDMA 145 (232)
T ss_pred CcccEEEeccC
Confidence 78999998863
No 269
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.98 E-value=0.94 Score=47.73 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=56.3
Q ss_pred CeEEEEeeechHHHH-HHhhC---CCEEEEEeCcHHHHHHHHHHHH-HcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 428 DVVCDVFAGVGPICI-PAAKI---VKRVYANDLNPYAVDYLERNSV-LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 428 e~VLDlfAGvG~FaI-paAkk---g~~V~AvDiNP~Ave~l~eNak-lNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
.+|+=+|||.=|++. .+|+. +..|.++|++|+|++.+++=++ ..++.+++.++++|+.+.... -..||+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d------l~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD------LKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------SE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc------cccCCE
Confidence 489989888777754 55544 4689999999999999998777 667888899999999876533 236999
Q ss_pred EEeCC-Cc----chHHHHHHHHHHhcCC
Q 007525 503 VVMNL-PN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNp-P~----~a~eFLdaa~~lLk~~ 525 (600)
|++-- .. ...+.++.+.+..+++
T Consensus 196 V~lAalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 196 VFLAALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp EEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred EEEhhhcccccchHHHHHHHHHhhCCCC
Confidence 88753 33 2356788888877765
No 270
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.72 E-value=0.15 Score=57.75 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=70.0
Q ss_pred CeEEEEeeechHHHHHHhh------CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 428 DVVCDVFAGVGPICIPAAK------IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAk------kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.+|+=+|||-|+++-...+ +..++||+|-||.|+-.|+. .+....+++|+++.+|.+++-. +.++.|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a------p~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA------PREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC------chhhcc
Confidence 4688899999999654433 23589999999999999876 6666778899999999999852 135688
Q ss_pred EEEeCCCcc------hHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPND------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~------a~eFLdaa~~lLk~~ 525 (600)
.+|..+-.+ +.|=||.+.+.+++.
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCC
Confidence 888765442 467788888888875
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=91.57 E-value=0.39 Score=50.08 Aligned_cols=45 Identities=9% Similarity=0.243 Sum_probs=35.9
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch--------------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA--------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a--------------------~eFLdaa~~lLk~~ 525 (600)
..++++|+.+++..+. .+++|+|++|||+.. .+++.++.++|+++
T Consensus 9 ~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~ 73 (284)
T PRK11524 9 KTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQ 73 (284)
T ss_pred CEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999986542 568999999999742 24778888888876
No 272
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=91.23 E-value=0.17 Score=59.40 Aligned_cols=49 Identities=29% Similarity=0.218 Sum_probs=43.8
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLN 471 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklN 471 (600)
....+..++|-|||-|.+.+.+++.|+.|+|+|+||.|+-.++.-++.-
T Consensus 87 ~~~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 87 TPFEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred CcccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhcc
Confidence 3456788999999999999999999999999999999999998877653
No 273
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=91.16 E-value=1.3 Score=46.54 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
..+||-.|||.|.++..+|++|..|.|||.+-.|+ +--|.-+|+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Ml--l~s~fiLn~ 100 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFML--LASNFILNH 100 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHH--HHHHHHHcc
Confidence 46899999999999999999999999999998884 444555564
No 274
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.14 E-value=0.3 Score=44.96 Aligned_cols=50 Identities=32% Similarity=0.333 Sum_probs=33.3
Q ss_pred EEeeech--HHHHHHh--hC--CCEEEEEeCcHHHHHHHHHH--HHHcCCCCcEEEEE
Q 007525 432 DVFAGVG--PICIPAA--KI--VKRVYANDLNPYAVDYLERN--SVLNKLEKKIEVFN 481 (600)
Q Consensus 432 DlfAGvG--~FaIpaA--kk--g~~V~AvDiNP~Ave~l~eN--aklNgl~nrV~~i~ 481 (600)
|+||++| ...+..+ .. +.+|+++|-+|..++.++.| +.+|+..+.++++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 5555443 22 46999999999999999999 88886543344443
No 275
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.08 E-value=0.87 Score=47.46 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=74.4
Q ss_pred HhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 421 LSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 421 v~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+..+.+|.. +..|+|+=-++-.+.+..-+..++|+-|.=+..++.|.. + +.++.+.++|++..+...+. +.++=
T Consensus 84 i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~~~l~a~LP--P~erR 157 (279)
T COG2961 84 VRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGFLALKAHLP--PKERR 157 (279)
T ss_pred HHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcHHHHhhhCC--CCCcc
Confidence 334566665 999999999998888888899999999999999999987 2 33699999999998876542 34445
Q ss_pred cEEEeCCCcchHH----HHHHHHHHhcC
Q 007525 501 TQVVMNLPNDATE----FLDAFRGIYRD 524 (600)
Q Consensus 501 D~VVmNpP~~a~e----FLdaa~~lLk~ 524 (600)
-.|++|||+-... .++.+...|+.
T Consensus 158 glVLIDPPfE~~~eY~rvv~~l~~~~kR 185 (279)
T COG2961 158 GLVLIDPPFELKDEYQRVVEALAEAYKR 185 (279)
T ss_pred eEEEeCCCcccccHHHHHHHHHHHHHHh
Confidence 6899999996542 34455555554
No 276
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.63 E-value=0.26 Score=50.87 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=57.2
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEc-ChHHHHHHHHHhhcCCc
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNM-DGRRFIDAMFASQKAHK 499 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~g-Dare~l~~l~~~~~~~~ 499 (600)
++-++||+|.| .-.|.-. ..|.+-++-|+++.|++.++.|+..| ++++.|++... |-...+..+.. ..+.
T Consensus 78 ~~i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~ 153 (292)
T COG3129 78 KNIRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNER 153 (292)
T ss_pred CceEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--ccce
Confidence 45578888655 4443222 13678999999999999999999999 88877776543 33333322221 2578
Q ss_pred ccEEEeCCCcch
Q 007525 500 ITQVVMNLPNDA 511 (600)
Q Consensus 500 fD~VVmNpP~~a 511 (600)
||.+++|||..+
T Consensus 154 yd~tlCNPPFh~ 165 (292)
T COG3129 154 YDATLCNPPFHD 165 (292)
T ss_pred eeeEecCCCcch
Confidence 999999999864
No 277
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.39 E-value=1.1 Score=45.75 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcC-------CCCcEEEEEcChHHHHHHHHHhhc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK-------LEKKIEVFNMDGRRFIDAMFASQK 496 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNg-------l~nrV~~i~gDare~l~~l~~~~~ 496 (600)
..-.++|+|||-|.+.+.++-+- .-++|.||--...+|.++.+...+ +.| +-+..+++..++.+++..+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kg- 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKG- 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhc-
Confidence 34569999999999999999873 589999999999999999988765 554 8899999999998877531
Q ss_pred CCcccEEEeCCCcc----------hHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPND----------ATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~----------a~eFLdaa~~lLk~~ 525 (600)
.-.-+.+...-|.+ ....+.....+++.+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~g 176 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREG 176 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcC
Confidence 11123333333442 124567777777765
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.04 E-value=3.2 Score=45.07 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCCCeEEEEeee-chHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++|+=.|+| .|..++.+|+ .|++|+|+|.+++-.+.+++ -|- -.+++....+.+..+. +.+|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~----lGA---d~~i~~~~~~~~~~~~-----~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK----LGA---DHVINSSDSDALEAVK-----EIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH----hCC---cEEEEcCCchhhHHhH-----hhCc
Confidence 7789998888775 7788999998 58999999999999998775 232 2445533222332221 2388
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.||---| ..-++.+.++++.+ |++.+-...
T Consensus 232 ~ii~tv~---~~~~~~~l~~l~~~--------G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG---PATLEPSLKALRRG--------GTLVLVGLP 261 (339)
T ss_pred EEEECCC---hhhHHHHHHHHhcC--------CEEEEECCC
Confidence 7776555 33457778888876 456665554
No 279
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.90 E-value=0.92 Score=40.49 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=63.0
Q ss_pred echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchHHH
Q 007525 436 GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEF 514 (600)
Q Consensus 436 GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~eF 514 (600)
|+|.+++.+|+. |++|+++|.++.-.+.+++ .|.. .++..+-.++..++.+-.....+|.|+--.. ....
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--SGDT 71 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSS--SHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEecC--cHHH
Confidence 689999999985 7899999999999888765 4533 3344433333333222112346897776544 2467
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 515 LDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 515 Ldaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
++.+..+++++ +++.++.+..
T Consensus 72 ~~~~~~~l~~~--------G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPG--------GRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEE--------EEEEEESSTS
T ss_pred HHHHHHHhccC--------CEEEEEEccC
Confidence 88899999886 6899998877
No 280
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.03 E-value=2 Score=45.74 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=51.0
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 486 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare 486 (600)
.|++||--|+|.| .+++.+|++|+++..+|+|++..+...+.++.+| ++..+.+|.-+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~ 97 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISD 97 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCC
Confidence 5899999999988 6888999999999999999999999999999886 47888888743
No 281
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.98 E-value=5.9 Score=40.52 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=71.3
Q ss_pred CCCeEEEEeeech----HHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcCh-HHHHHHHHHhhcCC
Q 007525 426 FKDVVCDVFAGVG----PICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG-RRFIDAMFASQKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG----~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDa-re~l~~l~~~~~~~ 498 (600)
.-..+++..|+.| ++++.+|.+ |.++++|--+++.....++.+...++.+.++|+.++. .+.+..+ .
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~------~ 114 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL------K 114 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc------c
Confidence 3467899977654 345555544 6799999999999888888888888887789999985 5566543 3
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYG 540 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~ 540 (600)
.+|.++.|-= ..+|...++++++-+..+ .+|-||.
T Consensus 115 ~iDF~vVDc~--~~d~~~~vl~~~~~~~~G-----aVVV~~N 149 (218)
T PF07279_consen 115 GIDFVVVDCK--REDFAARVLRAAKLSPRG-----AVVVCYN 149 (218)
T ss_pred CCCEEEEeCC--chhHHHHHHHHhccCCCc-----eEEEEec
Confidence 5899999863 356665666666654322 3555553
No 282
>PRK13699 putative methylase; Provisional
Probab=88.71 E-value=0.89 Score=46.20 Aligned_cols=45 Identities=2% Similarity=0.029 Sum_probs=35.7
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch-------------------HHHHHHHHHHhcCC
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------------TEFLDAFRGIYRDR 525 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a-------------------~eFLdaa~~lLk~~ 525 (600)
++++++|+.+.++.+ +++++|+||.|||+.. .+++.++.++|+++
T Consensus 2 ~~l~~gD~le~l~~l----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpg 65 (227)
T PRK13699 2 SRFILGNCIDVMARF----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKD 65 (227)
T ss_pred CeEEechHHHHHHhC----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCC
Confidence 368899999998765 3678999999999951 24567788888875
No 283
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=88.52 E-value=0.39 Score=52.36 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=77.0
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.+.++..++|++||+|+.+...+.. ++.+++++.|+..+.....-....++.++..+..+|...-. + .+..||
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~---f---edn~fd 180 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP---F---EDNTFD 180 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC---C---CccccC
Confidence 3678889999999999999999986 57999999999988887777777777765555444443322 1 245677
Q ss_pred EEEe-C----CCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 007525 502 QVVM-N----LPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKA 544 (600)
Q Consensus 502 ~VVm-N----pP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~ 544 (600)
.+-. + .|. ....+.++.+.++++ |..-+|+|.+.
T Consensus 181 ~v~~ld~~~~~~~-~~~~y~Ei~rv~kpG--------G~~i~~e~i~~ 219 (364)
T KOG1269|consen 181 GVRFLEVVCHAPD-LEKVYAEIYRVLKPG--------GLFIVKEWIKT 219 (364)
T ss_pred cEEEEeecccCCc-HHHHHHHHhcccCCC--------ceEEeHHHHHh
Confidence 5432 2 232 356777888887775 68889999764
No 284
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=88.00 E-value=6.5 Score=41.18 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=81.3
Q ss_pred EecCCceEEEEEeccEEEEEecCeeeecChhHHHHHHHHh-----cCCCCCeEEEEeeechHHHHHHhhC-C--CEEEEE
Q 007525 383 LAGNNSLVTMLLFHHLSLFRCFDTIYWNSKLATERQRLLS-----GFNFKDVVCDVFAGVGPICIPAAKI-V--KRVYAN 454 (600)
Q Consensus 383 LaGe~~~~t~vkEnG~~F~vD~~kfy~n~Rl~tEr~Riv~-----~l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~Av 454 (600)
+||+....++....-|.|++ ||+--+.-..-|+. .+++|..||-|+|+.|+..-+.+.. | .-|||+
T Consensus 114 vYgEkRisv~~~~~kvEyRV------WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAV 187 (317)
T KOG1596|consen 114 VYGEKRISVENEDGKVEYRV------WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAV 187 (317)
T ss_pred ccCceEEEeecCCCcEEEEE------eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEE
Confidence 55655443333333455554 77642221122221 2789999999999999998888875 3 479999
Q ss_pred eCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc--hHHHHHHHHHHhcCC
Q 007525 455 DLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND--ATEFLDAFRGIYRDR 525 (600)
Q Consensus 455 DiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~--a~eFLdaa~~lLk~~ 525 (600)
|.++++=..|..=++ +-.| |.++-.||+.--+.-. .-.-+|.|+.|.+.. +.-..-.+.-.|+++
T Consensus 188 Efs~rsGRdL~nmAk--kRtN-iiPIiEDArhP~KYRm---lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~g 254 (317)
T KOG1596|consen 188 EFSHRSGRDLINMAK--KRTN-IIPIIEDARHPAKYRM---LVGMVDVIFADVAQPDQARIVALNAQYFLKNG 254 (317)
T ss_pred EecccchHHHHHHhh--ccCC-ceeeeccCCCchheee---eeeeEEEEeccCCCchhhhhhhhhhhhhhccC
Confidence 999999888765443 3344 8888899876432100 123589999987653 322223445556665
No 285
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=87.70 E-value=0.93 Score=47.95 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=59.1
Q ss_pred CeEEEEeeech--HHHHHHh--hC------CCEEEEEeCcHHHHHHHHHHHH----HcC---------------------
Q 007525 428 DVVCDVFAGVG--PICIPAA--KI------VKRVYANDLNPYAVDYLERNSV----LNK--------------------- 472 (600)
Q Consensus 428 e~VLDlfAGvG--~FaIpaA--kk------g~~V~AvDiNP~Ave~l~eNak----lNg--------------------- 472 (600)
-+|+.++|.+| +++|++. .. ..+|+|.|||+.+++.|++.+= ..+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 5555443 31 2489999999999999998731 001
Q ss_pred -----CCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC--CCc----chHHHHHHHHHHhcCC
Q 007525 473 -----LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN--LPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 473 -----l~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN--pP~----~a~eFLdaa~~lLk~~ 525 (600)
+.+.|.+...|..+.. . ...+.||.|++- +-+ .....+..+...|+++
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~---~--~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQ---W--AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred EEChHHHccCEEEcccCCCCC---C--ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 1133445555543310 0 013579999872 112 2456888999999886
No 286
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=86.31 E-value=7.5 Score=40.18 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=76.6
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
..+|.+||.+|-|-|...-.+-.+. .+=+-+|.+|+.++.++.+.-..+ .+|.++.+-..+.+..+. ++.||-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~----d~~FDG 172 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLP----DKHFDG 172 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhcccc----ccCcce
Confidence 4689999999999999887776653 567779999999999998765443 358999999999887764 567999
Q ss_pred EEeCCCc----chHHHHHHHHHHhcCC
Q 007525 503 VVMNLPN----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 503 VVmNpP~----~a~eFLdaa~~lLk~~ 525 (600)
|.-|--. ....|-+.+.++++++
T Consensus 173 I~yDTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 173 IYYDTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred eEeechhhHHHHHHHHHHHHhhhcCCC
Confidence 9998642 2357888999999986
No 287
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=85.34 E-value=1.7 Score=47.83 Aligned_cols=53 Identities=28% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHhc------CCCCCeEEEEeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHH
Q 007525 414 ATERQRLLSG------FNFKDVVCDVFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 414 ~tEr~Riv~~------l~~ge~VLDlfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~e 466 (600)
+.|-+++.+. +.+-+.|+|+|+|.|+.+-.++-+ |-.|+|||-|....+.+++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4455555543 345678999999999999988865 7799999999777765543
No 288
>PTZ00357 methyltransferase; Provisional
Probab=85.25 E-value=1.5 Score=51.53 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=65.2
Q ss_pred eEEEEeeechHHH---HHHhhC-C--CEEEEEeCcHHHHHHHHHHHH-HcCC-------CCcEEEEEcChHHHHHHHH-H
Q 007525 429 VVCDVFAGVGPIC---IPAAKI-V--KRVYANDLNPYAVDYLERNSV-LNKL-------EKKIEVFNMDGRRFIDAMF-A 493 (600)
Q Consensus 429 ~VLDlfAGvG~Fa---IpaAkk-g--~~V~AvDiNP~Ave~l~eNak-lNgl-------~nrV~~i~gDare~l~~l~-~ 493 (600)
+|+=+|||=|++. +.|++. + .+|+|+|-||.++.++..+.+ .+.. .++|++++.|+|++-.... .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999985 444443 3 489999999877666655532 2234 3469999999999832100 0
Q ss_pred h----hcCCcccEEEeCCCcc------hHHHHHHHHHHhcC
Q 007525 494 S----QKAHKITQVVMNLPND------ATEFLDAFRGIYRD 524 (600)
Q Consensus 494 ~----~~~~~fD~VVmNpP~~------a~eFLdaa~~lLk~ 524 (600)
+ ...+++|+||.-+-.+ +.|=|+.+.+.|++
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 0 0013699999876542 56888888888875
No 289
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=84.34 E-value=2 Score=46.38 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=56.6
Q ss_pred EEEeeechHHHHHHhhC----CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH-HHHHHHhhcCCcccEEEe
Q 007525 431 CDVFAGVGPICIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKAHKITQVVM 505 (600)
Q Consensus 431 LDlfAGvG~FaIpaAkk----g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~-l~~l~~~~~~~~fD~VVm 505 (600)
+|+| +|.-.|..+-. +..-.|.|++..++.+++.|+..|+++..+.+++....+. +.......+...||.+.+
T Consensus 107 iDIg--tgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIG--TGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eecc--CchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 5665 45555555542 4689999999999999999999999998888887755332 222221112446999999
Q ss_pred CCCcch
Q 007525 506 NLPNDA 511 (600)
Q Consensus 506 NpP~~a 511 (600)
|||.+.
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 999874
No 290
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.87 E-value=1 Score=47.33 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=34.0
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAV 461 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Av 461 (600)
....|.+++|+|+|+|..+-.+-+.|..|+|+|+--.++
T Consensus 24 ~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysy 62 (330)
T COG3392 24 EDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSY 62 (330)
T ss_pred cccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHHHH
Confidence 356788999999999999999999999999999965554
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.22 E-value=18 Score=38.93 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=66.7
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l~~l~~~~~~~~ 499 (600)
..++.+|+=+||| +|.+++.+|+. | .+|+++|.+++-++.+++-. +.+ .+..... +....+..+. .+..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~-~~~~~~~~~~~~~~~~~t---~g~g 238 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GAD-VVVNPSEDDAGAEILELT---GGRG 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCe-EeecCccccHHHHHHHHh---CCCC
Confidence 3445589999998 67777778875 5 59999999999999988621 111 0111111 3333332221 1336
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
+|+++=--- +...+..+..+++++ +.|++-.+....
T Consensus 239 ~D~vie~~G--~~~~~~~ai~~~r~g--------G~v~~vGv~~~~ 274 (350)
T COG1063 239 ADVVIEAVG--SPPALDQALEALRPG--------GTVVVVGVYGGE 274 (350)
T ss_pred CCEEEECCC--CHHHHHHHHHHhcCC--------CEEEEEeccCCc
Confidence 897775332 455778889988886 578887776544
No 292
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.83 E-value=11 Score=43.82 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=62.2
Q ss_pred CeEEEEeeechHHHHHHhh------------CC--CEEEEEeCcHHHHHHHHHHHH-------------------HcCC-
Q 007525 428 DVVCDVFAGVGPICIPAAK------------IV--KRVYANDLNPYAVDYLERNSV-------------------LNKL- 473 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAk------------kg--~~V~AvDiNP~Ave~l~eNak-------------------lNgl- 473 (600)
=+|+|+|-|+|.-.+.+.+ .. -+.+++|..|-+.+.+.+-.. ..|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 5799999999986665542 01 279999986644433333221 1232
Q ss_pred -----CC--cEEEEEcChHHHHHHHHHhhcCCcccEEEeCC--Ccc-----hHHHHHHHHHHhcCC
Q 007525 474 -----EK--KIEVFNMDGRRFIDAMFASQKAHKITQVVMNL--PND-----ATEFLDAFRGIYRDR 525 (600)
Q Consensus 474 -----~n--rV~~i~gDare~l~~l~~~~~~~~fD~VVmNp--P~~-----a~eFLdaa~~lLk~~ 525 (600)
.+ .++.+.||+++.+.++. ..+|.+.+|+ |.. ..+++..+.++.+++
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~-----~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLD-----ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPG 199 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhcc-----ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCC
Confidence 12 35688899999987642 4699999997 443 357888888888875
No 293
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=79.48 E-value=4.3 Score=39.49 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=58.8
Q ss_pred eechHHHHHHhhC-C--CEEEE--EeCcHHHHH---HHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 435 AGVGPICIPAAKI-V--KRVYA--NDLNPYAVD---YLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 435 AGvG~FaIpaAkk-g--~~V~A--vDiNP~Ave---~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
=|-=.|++.+|+. + ..++| .|...+..+ .+..|++.-.-.+-...+..||...-.... .....||+||.|
T Consensus 5 eGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~--~~~~~FDrIiFN 82 (166)
T PF10354_consen 5 EGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFR--LKNQRFDRIIFN 82 (166)
T ss_pred ccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccccc--ccCCcCCEEEEe
Confidence 3444566666664 3 35555 444444333 233565543222212345667766543221 024679999999
Q ss_pred CCcch-----------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 007525 507 LPNDA-----------------TEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKAR 545 (600)
Q Consensus 507 pP~~a-----------------~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~ 545 (600)
.|..+ ..|+..+..+++++ |.|||--....+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~--------G~IhVTl~~~~p 130 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPD--------GEIHVTLKDGQP 130 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC--------CEEEEEeCCCCC
Confidence 99865 15777888888764 589987665543
No 294
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=77.22 E-value=3.2 Score=43.34 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHH
Q 007525 427 KDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNa 468 (600)
..+|||+|||.|+-...+... -..++++|.|+.+.+.++.=+
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 468999999999866655542 248999999999999777643
No 295
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=76.51 E-value=12 Score=41.66 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=64.5
Q ss_pred HHHhc--CCCCCeEEEEeeechHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcC-------C-CCcEEEEEcChHH
Q 007525 419 RLLSG--FNFKDVVCDVFAGVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNK-------L-EKKIEVFNMDGRR 486 (600)
Q Consensus 419 Riv~~--l~~ge~VLDlfAGvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNg-------l-~nrV~~i~gDare 486 (600)
++++. +.+++...|+|+|||.....+|.. ++ .-+|+|+....-+++..|.+.|+ - .+.++.++++...
T Consensus 183 si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 183 SIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 44443 779999999999999988777665 33 78899998877777777766652 1 2457888888654
Q ss_pred --HHHHHHHhhcCCcccEEEeCCCcchHHH
Q 007525 487 --FIDAMFASQKAHKITQVVMNLPNDATEF 514 (600)
Q Consensus 487 --~l~~l~~~~~~~~fD~VVmNpP~~a~eF 514 (600)
+...+. ...++|++|--++..+.
T Consensus 263 ~~~v~eI~-----~eatvi~vNN~~Fdp~L 287 (419)
T KOG3924|consen 263 PKRVTEIQ-----TEATVIFVNNVAFDPEL 287 (419)
T ss_pred HHHHHHHh-----hcceEEEEecccCCHHH
Confidence 233332 35789999887776544
No 296
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=75.35 E-value=30 Score=35.44 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=56.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++++|+..++| +|..++.+|+. |.+|++++.+++..+.+++ .+++..+.....+..+.+ ... ....+|
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~---~~~~~D 234 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG---LGGGFD 234 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh---cCCCce
Confidence 6778888887765 68888888874 7899999999998887754 344321111112232323 111 245689
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+|+-... ....+..+.+.++++
T Consensus 235 ~vid~~g--~~~~~~~~~~~l~~~ 256 (338)
T cd08254 235 VIFDFVG--TQPTFEDAQKAVKPG 256 (338)
T ss_pred EEEECCC--CHHHHHHHHHHhhcC
Confidence 7664321 134566777777765
No 297
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=74.48 E-value=6 Score=44.95 Aligned_cols=70 Identities=9% Similarity=-0.138 Sum_probs=41.4
Q ss_pred ccEEEEEecCeeeecChhHHHHHHHHhcC----CCC--CeEEEEeeechHHHHHHhhCCCEEEEE---eCcHHHHHHHH
Q 007525 396 HHLSLFRCFDTIYWNSKLATERQRLLSGF----NFK--DVVCDVFAGVGPICIPAAKIVKRVYAN---DLNPYAVDYLE 465 (600)
Q Consensus 396 nG~~F~vD~~kfy~n~Rl~tEr~Riv~~l----~~g--e~VLDlfAGvG~FaIpaAkkg~~V~Av---DiNP~Ave~l~ 465 (600)
.|=.|.|.-+...|-++...=-+.|.+.+ ..| .++||+|||+|.||..+..++..+..+ |..+..++.+.
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal 159 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL 159 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh
Confidence 44456665555555544332223343332 233 369999999999999999998655443 33444444444
No 298
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=73.29 E-value=31 Score=33.68 Aligned_cols=81 Identities=14% Similarity=0.011 Sum_probs=51.3
Q ss_pred HHhcCCCCCeEEEEeeechHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHH--HHHHHHHhhc
Q 007525 420 LLSGFNFKDVVCDVFAGVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR--FIDAMFASQK 496 (600)
Q Consensus 420 iv~~l~~ge~VLDlfAGvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare--~l~~l~~~~~ 496 (600)
+.+....+.+|+-++|=+-+.++.... -+.+++..|++..--. +.+. .+..=|..+ -+..- .
T Consensus 19 l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~----------~~~~-~F~fyD~~~p~~~~~~----l 83 (162)
T PF10237_consen 19 LLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ----------FGGD-EFVFYDYNEPEELPEE----L 83 (162)
T ss_pred HHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh----------cCCc-ceEECCCCChhhhhhh----c
Confidence 333345678999999999888887722 2468999999875433 2211 233333322 22221 2
Q ss_pred CCcccEEEeCCCcchHHHH
Q 007525 497 AHKITQVVMNLPNDATEFL 515 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFL 515 (600)
.+++|+||+|||....+.+
T Consensus 84 ~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred CCCceEEEECCCCCCHHHH
Confidence 4689999999999876655
No 299
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.07 E-value=29 Score=35.53 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=56.2
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---ChHHHHHHHHHhhcC
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DGRRFIDAMFASQKA 497 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Dare~l~~l~~~~~~ 497 (600)
+.+|++|+=.+ .|+|.+++.+|+. |++|++++.+++-.+.+++ .|.+. ++.. |..+.+..+. .
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~~---vi~~~~~~~~~~v~~~~----~ 209 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFDA---VFNYKTVSLEEALKEAA----P 209 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCE---EEeCCCccHHHHHHHHC----C
Confidence 67888888776 4788888888885 7899999999998887765 35432 2322 3333332221 2
Q ss_pred CcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 498 HKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 498 ~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
..+|.|+ |.-. . ..+..+.+.++++
T Consensus 210 ~gvd~vl-d~~g-~-~~~~~~~~~l~~~ 234 (329)
T cd08294 210 DGIDCYF-DNVG-G-EFSSTVLSHMNDF 234 (329)
T ss_pred CCcEEEE-ECCC-H-HHHHHHHHhhccC
Confidence 4578655 5432 2 4556667777654
No 300
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=72.99 E-value=33 Score=35.80 Aligned_cols=89 Identities=20% Similarity=0.115 Sum_probs=58.0
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE---c-ChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN---M-DGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~---g-Dare~l~~l~~~~~ 496 (600)
+++|++|+=.++ |+|.+++.+|+. |.+|++...+++-.+.+++. .|.+. ++. . |..+.+..+.
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~---vi~~~~~~~~~~~i~~~~---- 218 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDD---AFNYKEEPDLDAALKRYF---- 218 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCce---eEEcCCcccHHHHHHHhC----
Confidence 678999998875 788899988885 78999999999888877653 24432 232 1 3333333221
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...+|.|+ |.-. . ..+..+...++++
T Consensus 219 ~~gvd~v~-d~~g-~-~~~~~~~~~l~~~ 244 (338)
T cd08295 219 PNGIDIYF-DNVG-G-KMLDAVLLNMNLH 244 (338)
T ss_pred CCCcEEEE-ECCC-H-HHHHHHHHHhccC
Confidence 24578665 5433 2 4556777777765
No 301
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=72.96 E-value=7.5 Score=40.53 Aligned_cols=78 Identities=21% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCC-----CCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKL-----EKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl-----~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
....||.+|+|+|--++.+|... ..|..-| .|..++.++.|...|+. ...+.+...+....+.... ....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD-~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~---~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTD-LPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF---RLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCC-chhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh---ccCC
Confidence 45679999999999999999964 5665544 56778888888666654 3235444444333322111 1223
Q ss_pred -ccEEEeCC
Q 007525 500 -ITQVVMNL 507 (600)
Q Consensus 500 -fD~VVmNp 507 (600)
+|+|++--
T Consensus 162 ~~DlilasD 170 (248)
T KOG2793|consen 162 PFDLILASD 170 (248)
T ss_pred cccEEEEee
Confidence 89988743
No 302
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.16 E-value=6.2 Score=42.80 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=38.7
Q ss_pred cCCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHH
Q 007525 423 GFNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLER 466 (600)
Q Consensus 423 ~l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~e 466 (600)
.++.|.+||-+||| +|-.++..|+. |+ +|+.+|+++..++.+++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 47899999999999 68888888885 64 99999999999999987
No 303
>PRK07063 short chain dehydrogenase; Provisional
Probab=72.07 E-value=39 Score=33.57 Aligned_cols=80 Identities=15% Similarity=0.018 Sum_probs=49.8
Q ss_pred CCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+|+-.|++ |.++.. ++++|++|+.++.+++..+.+...+...+...++.++.+|..+. +..+++. ...+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5677766653 444444 44568999999999998888777766532233578888887542 2222211 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.|-
T Consensus 86 ~id~li~~a 94 (260)
T PRK07063 86 PLDVLVNNA 94 (260)
T ss_pred CCcEEEECC
Confidence 689888753
No 304
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=71.80 E-value=37 Score=36.08 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=62.2
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc----ChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM----DGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g----Dare~l~~l~~~~~ 496 (600)
+.+|++|+=.+| |+|.+++.+|+. |++|++++.+++-.+.++.. .|.+. +++. |..+.+..+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~~---vi~~~~~~~~~~~i~~~~---- 225 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFDE---AFNYKEEPDLDAALKRYF---- 225 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCCE---EEECCCcccHHHHHHHHC----
Confidence 678999988876 599999999885 78999999999887776533 34432 2322 3333333321
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGF 541 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F 541 (600)
...+|+|+ |.-. ...+..+..+++++ +++.+|..
T Consensus 226 ~~gvD~v~-d~vG--~~~~~~~~~~l~~~--------G~iv~~G~ 259 (348)
T PLN03154 226 PEGIDIYF-DNVG--GDMLDAALLNMKIH--------GRIAVCGM 259 (348)
T ss_pred CCCcEEEE-ECCC--HHHHHHHHHHhccC--------CEEEEECc
Confidence 23588666 5432 24567777778765 45555654
No 305
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=71.52 E-value=44 Score=35.93 Aligned_cols=44 Identities=25% Similarity=0.193 Sum_probs=36.9
Q ss_pred CCCCCeEEEEeeec-hHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGV-GPICIPAAKI-VK-RVYANDLNPYAVDYLERN 467 (600)
Q Consensus 424 l~~ge~VLDlfAGv-G~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eN 467 (600)
+.+|++|+..+||. |.+++.+|+. |. +|++++.+++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 56889999998876 8888888875 65 699999999998888764
No 306
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.52 E-value=41 Score=35.22 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=60.2
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCE-EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKR-VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~-V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+=.+|| +|.+++.+|+. |.+ |++++.+++-.+.+++ .|...-+..-..+ .+.+..+. ....+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~~~~ 229 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RELRF 229 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cCCCC
Confidence 5678888877653 45555566664 764 8999999998887643 3432111111122 22222222 13457
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
|.+++|.-.. ...+..+.++++++ |.+.++.+..
T Consensus 230 d~~v~d~~G~-~~~~~~~~~~l~~~--------G~iv~~G~~~ 263 (347)
T PRK10309 230 DQLILETAGV-PQTVELAIEIAGPR--------AQLALVGTLH 263 (347)
T ss_pred CeEEEECCCC-HHHHHHHHHHhhcC--------CEEEEEccCC
Confidence 8777775442 35678888888876 4666666543
No 307
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=71.27 E-value=13 Score=37.94 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=35.7
Q ss_pred HHHHhhCCCEEEEEeCcHHH--HHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 441 CIPAAKIVKRVYANDLNPYA--VDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 441 aIpaAkkg~~V~AvDiNP~A--ve~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
|..++++|.+|..+|.+|.. ..++......+.+.........+....+....+.-....||+||+|.|...
T Consensus 23 A~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~ 95 (231)
T PRK13849 23 CAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALADTHGGS 95 (231)
T ss_pred HHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCCCEEEEeCCCCc
Confidence 44555678899999997764 455433222222221122222221122222221111246999999988743
No 308
>PRK05867 short chain dehydrogenase; Provisional
Probab=71.26 E-value=37 Score=33.67 Aligned_cols=79 Identities=14% Similarity=-0.013 Sum_probs=50.2
Q ss_pred CCCeEEEEeeechHHHH----HHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICI----PAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaI----paAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.|.+++-.|++ |.++. .+++.|++|+.++.+++..+.+...++..+ +++.++.+|..+. +..+++. ...
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46677777753 33343 444568999999999998888777666544 3477888887542 2222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.+|.|.
T Consensus 85 g~id~lv~~a 94 (253)
T PRK05867 85 GGIDIAVCNA 94 (253)
T ss_pred CCCCEEEECC
Confidence 4689988764
No 309
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=71.21 E-value=15 Score=40.08 Aligned_cols=95 Identities=14% Similarity=0.019 Sum_probs=70.0
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
.-...+|+|+|+|..+-.+..+--.|-+++.+...+-.+..+.. -| |+.+-+|.+.-++ +.|.|+|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI~m 242 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAIWM 242 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeEEE
Confidence 35899999999999998888865579999999888888877765 44 5566788765432 3567776
Q ss_pred -----CCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 506 -----NLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 506 -----NpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.+.. -.+||......++++ |.|-+-+..
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~--------GkIiv~E~V 277 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPG--------GKIIVVENV 277 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCC--------CEEEEEecc
Confidence 55543 357888888888765 567777773
No 310
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=69.55 E-value=41 Score=35.79 Aligned_cols=92 Identities=16% Similarity=0.051 Sum_probs=53.1
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++|+=.++| +|.+++.+|+. |+ +|+++|.+++-.+.+++ .|.+ .+++.+..++...+.+. ....+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~-~~~g~ 260 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVREL-TGGGV 260 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHH-hCCCC
Confidence 6778888877653 45555666664 76 79999999998887764 3443 22332222222222111 12358
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+---. ....+..+.++++++
T Consensus 261 d~vid~~G--~~~~~~~~~~~l~~~ 283 (371)
T cd08281 261 DYAFEMAG--SVPALETAYEITRRG 283 (371)
T ss_pred CEEEECCC--ChHHHHHHHHHHhcC
Confidence 87764321 234566777777765
No 311
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=69.18 E-value=35 Score=35.84 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=57.1
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
..+|++|+=.+|| +|.+++.+|+. |+ +|+++|.+++..+.+++ .|.+ .++..+-.++ .++... .+.+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~-~~~~~~--~g~~ 236 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD---KLVNPQNDDL-DHYKAE--KGYF 236 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc---EEecCCcccH-HHHhcc--CCCC
Confidence 3468888877653 55566666664 66 79999999998887764 3443 1222111111 111111 2348
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|.|+ |.-. +...+..+..+++++ |++.++...
T Consensus 237 D~vi-d~~G-~~~~~~~~~~~l~~~--------G~iv~~G~~ 268 (343)
T PRK09880 237 DVSF-EVSG-HPSSINTCLEVTRAK--------GVMVQVGMG 268 (343)
T ss_pred CEEE-ECCC-CHHHHHHHHHHhhcC--------CEEEEEccC
Confidence 8655 5433 234567788888875 466666553
No 312
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=68.20 E-value=3.9 Score=42.76 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=48.1
Q ss_pred CeEEEEeeechHH--HHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEE
Q 007525 428 DVVCDVFAGVGPI--CIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 504 (600)
Q Consensus 428 e~VLDlfAGvG~F--aIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VV 504 (600)
-+|+.+++|+|.. |+..|... .-|-|+|+|+.|-+.-..|-.-|=+.. ..+-...+.+|- .-.+|.++
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~-~~I~~lt~kefd--------~l~~~m~l 74 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKT-RNIQSLTVKEFD--------KLQANMLL 74 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhc-cccceeeHhhhh--------hcccceEe
Confidence 3689999999975 55555554 479999999999998888843332321 112222334442 13588999
Q ss_pred eCCCc
Q 007525 505 MNLPN 509 (600)
Q Consensus 505 mNpP~ 509 (600)
|.||.
T Consensus 75 MSPpC 79 (338)
T KOG0919|consen 75 MSPPC 79 (338)
T ss_pred eCCCC
Confidence 99986
No 313
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=68.17 E-value=5 Score=44.29 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=64.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
.+|..|+|.+|--|.=++++|.. -.+++|.|.++.-+++++.-++..|++. ++...+|..... ... .-....
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t~-~~~---~~~~v~ 286 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNTA-TPE---KFRDVT 286 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCCC-Ccc---ccccee
Confidence 46799999999999999988863 3589999999999999999999999986 777788876531 100 013467
Q ss_pred EEEeCCCcc
Q 007525 502 QVVMNLPND 510 (600)
Q Consensus 502 ~VVmNpP~~ 510 (600)
.|++||+.+
T Consensus 287 ~iL~DpscS 295 (413)
T KOG2360|consen 287 YILVDPSCS 295 (413)
T ss_pred EEEeCCCCC
Confidence 899999874
No 314
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=67.97 E-value=10 Score=41.50 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=56.1
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc----ChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM----DGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g----Dare~l~~l~~~~~ 496 (600)
+++|+.|.=.+|| +|--+|..|+. | .+++|+|+|++-.+++++ -|. ..+++. |+-+.+.++.
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGA---T~~vn~~~~~~vv~~i~~~T---- 251 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGA---THFVNPKEVDDVVEAIVELT---- 251 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCC---ceeecchhhhhHHHHHHHhc----
Confidence 7789999888875 77777877775 5 499999999999999875 343 334444 4555554432
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRD 524 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~ 524 (600)
+.-.|+++ |--. ..+.++.++.+..+
T Consensus 252 ~gG~d~~~-e~~G-~~~~~~~al~~~~~ 277 (366)
T COG1062 252 DGGADYAF-ECVG-NVEVMRQALEATHR 277 (366)
T ss_pred CCCCCEEE-EccC-CHHHHHHHHHHHhc
Confidence 22456553 2111 23455666666654
No 315
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=67.37 E-value=20 Score=37.04 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHhhCCCEEEEEeCcH--HHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcchH
Q 007525 443 PAAKIVKRVYANDLNP--YAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT 512 (600)
Q Consensus 443 paAkkg~~V~AvDiNP--~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a~ 512 (600)
.+|.+|.+|.-+|-+| ...+|.+.-.+.+.+.+++.++..+-...+....+.-....||+|++|+...+-
T Consensus 25 ~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDleG~as 96 (231)
T PF07015_consen 25 ELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDLEGGAS 96 (231)
T ss_pred HHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeCCCCCc
Confidence 3445688888888765 456774433334456666888877655555444322112358999999986543
No 316
>PRK05854 short chain dehydrogenase; Provisional
Probab=67.20 E-value=53 Score=34.34 Aligned_cols=81 Identities=11% Similarity=-0.056 Sum_probs=48.4
Q ss_pred CCCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~ 497 (600)
.|.+++=.|++ |.++.. +++.|++|+.+.-|++..+.+...+....-..++.++.+|..+.- +.+.+. ...
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35667666653 444444 445689999999998877776666654322224888888875431 221111 113
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|++|.|.
T Consensus 92 ~~iD~li~nA 101 (313)
T PRK05854 92 RPIHLLINNA 101 (313)
T ss_pred CCccEEEECC
Confidence 5689888653
No 317
>PRK07062 short chain dehydrogenase; Provisional
Probab=67.10 E-value=56 Score=32.58 Aligned_cols=82 Identities=11% Similarity=-0.105 Sum_probs=49.5
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
.|.+++-.||+.| .++..+++.|++|++++.+++..+.+.+.+....-..++.++.+|..+.- ..+.+. ...+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 3567777775432 23334445689999999999888777666654322224778888875532 222111 0135
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.|-
T Consensus 87 ~id~li~~A 95 (265)
T PRK07062 87 GVDMLVNNA 95 (265)
T ss_pred CCCEEEECC
Confidence 689888764
No 318
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=66.69 E-value=4.4 Score=42.21 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHhcCCCCCeEEEEeeechHHHHHHhhCCC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcC
Q 007525 419 RLLSGFNFKDVVCDVFAGVGPICIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 497 (600)
Q Consensus 419 Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~ 497 (600)
|+.+.-+....++|+|||.|+.+-.+...+. +++-+|.+-.+++.++. ++-+++. +..+.+|-... . + +.
T Consensus 65 rvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~--~~~~v~DEE~L-d--f---~e 135 (325)
T KOG2940|consen 65 RVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIE--TSYFVGDEEFL-D--F---KE 135 (325)
T ss_pred HHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceE--EEEEecchhcc-c--c---cc
Confidence 3433334567899999999999999988875 89999999999987764 2335553 55666775432 2 2 24
Q ss_pred CcccEEEe
Q 007525 498 HKITQVVM 505 (600)
Q Consensus 498 ~~fD~VVm 505 (600)
.++|.||.
T Consensus 136 ns~DLiis 143 (325)
T KOG2940|consen 136 NSVDLIIS 143 (325)
T ss_pred cchhhhhh
Confidence 57887774
No 319
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=66.13 E-value=56 Score=34.40 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|++|+=.+|| +|..++.+|+. |.+|+++|.+++-.+.+++ .|.+..+..-..|..++...+.+...+..+|
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d 239 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCCC
Confidence 6778999888874 35556666664 7799999999998887754 2443211111222222322211100122344
Q ss_pred E---EEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 Q---VVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~---VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
. ++.|-.. ....+..+..+++++
T Consensus 240 ~~~d~v~d~~g-~~~~~~~~~~~l~~~ 265 (349)
T TIGR03201 240 STGWKIFECSG-SKPGQESALSLLSHG 265 (349)
T ss_pred CCcCEEEECCC-ChHHHHHHHHHHhcC
Confidence 1 3444433 234566777788765
No 320
>PRK06172 short chain dehydrogenase; Provisional
Probab=65.88 E-value=64 Score=31.85 Aligned_cols=79 Identities=11% Similarity=-0.071 Sum_probs=49.6
Q ss_pred CCCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+++-.|+ .|.++.. +++.|++|++++-+++..+.+.+.++..+ .++.++.+|+.+. +..+++. ...
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 3567777775 3444444 44568899999999988877777665543 3588889988542 2222111 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.||.+.
T Consensus 83 g~id~li~~a 92 (253)
T PRK06172 83 GRLDYAFNNA 92 (253)
T ss_pred CCCCEEEECC
Confidence 4689888753
No 321
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=65.64 E-value=32 Score=30.15 Aligned_cols=67 Identities=25% Similarity=0.250 Sum_probs=47.0
Q ss_pred EeeechHHHHHHhhC---CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcccEEEeC
Q 007525 433 VFAGVGPICIPAAKI---VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 433 lfAGvG~FaIpaAkk---g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~fD~VVmN 506 (600)
+-||.|.++..+++. +. .|+.+|.+++.++.++.. + +.++.||+.+. +.++ .-..++.|++.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a----~i~~a~~vv~~ 69 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA----GIEKADAVVIL 69 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT----TGGCESEEEEE
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc----CccccCEEEEc
Confidence 458999999988873 44 899999999998877643 2 57899999765 3221 13468888887
Q ss_pred CCcch
Q 007525 507 LPNDA 511 (600)
Q Consensus 507 pP~~a 511 (600)
.+...
T Consensus 70 ~~~d~ 74 (116)
T PF02254_consen 70 TDDDE 74 (116)
T ss_dssp SSSHH
T ss_pred cCCHH
Confidence 66654
No 322
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=65.62 E-value=51 Score=34.88 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=53.3
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+-.+|| +|.+++.+|+. |. +|+++|.+++-.+.+++ .|.+.-+.....|..+.+..+. ....+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~---~~~g~ 246 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT---GGFGA 246 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh---CCCCC
Confidence 6788998887653 45555666664 66 59999999998888754 3443111111223333333222 12358
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+ |.-.. ...+..+..+++++
T Consensus 247 d~vi-d~~g~-~~~~~~~~~~~~~~ 269 (358)
T TIGR03451 247 DVVI-DAVGR-PETYKQAFYARDLA 269 (358)
T ss_pred CEEE-ECCCC-HHHHHHHHHHhccC
Confidence 8665 54322 34556677777765
No 323
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=65.52 E-value=47 Score=32.72 Aligned_cols=77 Identities=10% Similarity=-0.026 Sum_probs=48.2
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChH--------HHHHHHHH
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR--------RFIDAMFA 493 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDar--------e~l~~l~~ 493 (600)
++.+|+=.| |.|.++..++ +.|++|++++.+++..+.+...++..+.. ++.++.+|+. ++...+.+
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecccCCCHHHHHHHHHHHHH
Confidence 566666666 4566666555 45889999999998887777766654433 3666666653 11222221
Q ss_pred hhcCCcccEEEeC
Q 007525 494 SQKAHKITQVVMN 506 (600)
Q Consensus 494 ~~~~~~fD~VVmN 506 (600)
..+.+|.||.+
T Consensus 89 --~~~~id~vi~~ 99 (247)
T PRK08945 89 --QFGRLDGVLHN 99 (247)
T ss_pred --HhCCCCEEEEC
Confidence 13468988875
No 324
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=65.23 E-value=8.1 Score=38.63 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCeEEEEeeech--HHHHHH--hh-----CC--CEEEEEeCcHHHHHHHHHHH----HHcCC------------------
Q 007525 427 KDVVCDVFAGVG--PICIPA--AK-----IV--KRVYANDLNPYAVDYLERNS----VLNKL------------------ 473 (600)
Q Consensus 427 ge~VLDlfAGvG--~FaIpa--Ak-----kg--~~V~AvDiNP~Ave~l~eNa----klNgl------------------ 473 (600)
.-+|+.+||++| +++|++ .. .+ .+|+|.|+|+.+++.|++.+ ...++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 347999999999 454444 33 12 38999999999999988642 11111
Q ss_pred -----CCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCC--c----chHHHHHHHHHHhcCC
Q 007525 474 -----EKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP--N----DATEFLDAFRGIYRDR 525 (600)
Q Consensus 474 -----~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP--~----~a~eFLdaa~~lLk~~ 525 (600)
.+.|.+.+.|..+.. ...+.||+|++--- + .....++.+...|+++
T Consensus 112 v~~~lr~~V~F~~~NL~~~~------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPD------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred EChHHcCceEEEecccCCCC------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 134566666655511 12457999987321 1 1245677777777765
No 325
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.23 E-value=9.7 Score=37.82 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=60.2
Q ss_pred CCCeEEEEeeec-hHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCC--cEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 426 FKDVVCDVFAGV-GPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEK--KIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 426 ~ge~VLDlfAGv-G~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~n--rV~~i~gDare~l~~l~~~~~~~~f 500 (600)
.|..||++|+|- |--++.+|.+. ..|+--|=|.++++..++-...|.... ++.++.-+.... +... ...+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~--eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQ--EQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHH--hhCcc
Confidence 478899999984 55567777764 689999999999999999998885543 122222221111 1111 24589
Q ss_pred cEEEe-CCCcch---HHHHHHHHHHhcCC
Q 007525 501 TQVVM-NLPNDA---TEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVm-NpP~~a---~eFLdaa~~lLk~~ 525 (600)
|.|+. |--.+. ....+.+..+|++.
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~ 133 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPS 133 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcc
Confidence 98876 332221 23456666667664
No 326
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=65.17 E-value=70 Score=33.09 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=56.4
Q ss_pred CCCCCeEEEEee--echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc----ChHHHHHHHHHhhc
Q 007525 424 FNFKDVVCDVFA--GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM----DGRRFIDAMFASQK 496 (600)
Q Consensus 424 l~~ge~VLDlfA--GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g----Dare~l~~l~~~~~ 496 (600)
+.+|++||=.++ |+|.+++.+|+. |.+|++.+.+++-.+.+++ .|.+. ++.. +..+.+... .
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~~---vi~~~~~~~~~~~~~~~----~ 204 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFDV---AFNYKTVKSLEETLKKA----S 204 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCE---EEeccccccHHHHHHHh----C
Confidence 678999987773 688899988885 7899999999998887753 35532 2322 222333221 1
Q ss_pred CCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 497 AHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 497 ~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...+|+|+ |.-. . ..+..+..+++++
T Consensus 205 ~~gvdvv~-d~~G-~-~~~~~~~~~l~~~ 230 (325)
T TIGR02825 205 PDGYDCYF-DNVG-G-EFSNTVIGQMKKF 230 (325)
T ss_pred CCCeEEEE-ECCC-H-HHHHHHHHHhCcC
Confidence 23588665 5433 2 3446777778765
No 327
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=64.87 E-value=4.2 Score=43.07 Aligned_cols=41 Identities=17% Similarity=-0.095 Sum_probs=36.7
Q ss_pred hcCCCCCeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHH
Q 007525 422 SGFNFKDVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVD 462 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave 462 (600)
++.-.|++|+|+|||.|--+|.+.++| +.|.+.|.|.+.++
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 345579999999999999999999998 79999999999983
No 328
>PRK07904 short chain dehydrogenase; Provisional
Probab=64.78 E-value=43 Score=33.67 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=50.7
Q ss_pred cCCCCCeEEEEeeechHHHHHHh----hCC-CEEEEEeCcHHH-HHHHHHHHHHcCCCCcEEEEEcChHHH------HHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAA----KIV-KRVYANDLNPYA-VDYLERNSVLNKLEKKIEVFNMDGRRF------IDA 490 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaA----kkg-~~V~AvDiNP~A-ve~l~eNaklNgl~nrV~~i~gDare~------l~~ 490 (600)
.+..+.+|+-.|| +|.++..+| ++| .+|++++.+++. .+.+.+.++.++-. +++++.+|+.+. +..
T Consensus 4 ~~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~-~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 4 AVGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS-SVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred ccCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC-ceEEEEecCCChHHHHHHHHH
Confidence 3456677777776 455555544 454 799999999875 66666666655533 488888887542 222
Q ss_pred HHHhhcCCcccEEEeCC
Q 007525 491 MFASQKAHKITQVVMNL 507 (600)
Q Consensus 491 l~~~~~~~~fD~VVmNp 507 (600)
+.+ .+.+|.+|.+.
T Consensus 82 ~~~---~g~id~li~~a 95 (253)
T PRK07904 82 AFA---GGDVDVAIVAF 95 (253)
T ss_pred HHh---cCCCCEEEEee
Confidence 221 24689888654
No 329
>PRK07677 short chain dehydrogenase; Provisional
Probab=64.48 E-value=63 Score=32.00 Aligned_cols=77 Identities=14% Similarity=0.028 Sum_probs=46.0
Q ss_pred CeEEEEeeechHHHH----HHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCc
Q 007525 428 DVVCDVFAGVGPICI----PAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 499 (600)
Q Consensus 428 e~VLDlfAGvG~FaI----paAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~ 499 (600)
.+++-.|+ .|.++. .+++.|++|++++.++...+.+...++..+ .++.++.+|..+. +..+.+. ...+.
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45665555 333443 444568899999999988777766555433 3588888887432 2222111 01246
Q ss_pred ccEEEeCC
Q 007525 500 ITQVVMNL 507 (600)
Q Consensus 500 fD~VVmNp 507 (600)
.|++|.+-
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 89888664
No 330
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.29 E-value=53 Score=32.12 Aligned_cols=77 Identities=18% Similarity=0.038 Sum_probs=47.3
Q ss_pred CCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.+||=.|+ +|.++.. ++++|.+|++++-++...+.+..++.. ..++.++.+|..+.- ..+++. ....
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 445665554 3444444 445688999999999887777666544 234788888875432 222111 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|+||.+.
T Consensus 81 ~~d~vi~~a 89 (251)
T PRK07231 81 SVDILVNNA 89 (251)
T ss_pred CCCEEEECC
Confidence 689988764
No 331
>PRK09242 tropinone reductase; Provisional
Probab=64.10 E-value=60 Score=32.22 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=50.6
Q ss_pred CCCeEEEEee--echH-HHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFA--GVGP-ICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfA--GvG~-FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
.+.+++-.|+ |+|. ++..+++.|++|++++.+++..+.+..++....-..++.++.+|..+. +..+.+. ...+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567777765 3332 333444568999999999998888777776542223578888887542 1222111 1135
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|+||.+.
T Consensus 88 ~id~li~~a 96 (257)
T PRK09242 88 GLHILVNNA 96 (257)
T ss_pred CCCEEEECC
Confidence 689988765
No 332
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=64.05 E-value=11 Score=43.07 Aligned_cols=42 Identities=29% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHH
Q 007525 425 NFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 425 ~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~e 466 (600)
.++++|+=+||| +|-.++.+|+. |+.|+++|.+++..+.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 478999999999 57778888875 8899999999999988775
No 333
>PLN02780 ketoreductase/ oxidoreductase
Probab=63.77 E-value=44 Score=35.32 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=41.6
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChH
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 485 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDar 485 (600)
.|.+++-.||..| .++..+|++|++|+.++.|++.++.+.+.++...-..++..+..|..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 3778888886444 45556667799999999999999888877765321123666666654
No 334
>PRK08862 short chain dehydrogenase; Provisional
Probab=63.71 E-value=64 Score=32.11 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=50.8
Q ss_pred CCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC-
Q 007525 427 KDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH- 498 (600)
Q Consensus 427 ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~- 498 (600)
|.+++=.|++.| .++..++++|+.|+.++.+++.++.+.+.++..+. .+..+..|..+. +..+++. ...+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 567777776655 35556667799999999999998888777766553 366677765332 2222211 0123
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|.
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 789888774
No 335
>PRK07102 short chain dehydrogenase; Provisional
Probab=63.32 E-value=50 Score=32.47 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=47.4
Q ss_pred eEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHhhcCCcccE
Q 007525 429 VVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFASQKAHKITQ 502 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~~~~~~fD~ 502 (600)
+|+-.| |+|.++..++ ++|.+|++++.+++..+.+.+++..++-. +++++.+|..+.- ..+.++ ....+|.
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~-~~~~~d~ 79 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAV-AVSTHELDILDTASHAAFLDS-LPALPDI 79 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHHHHHHH-HhhcCCE
Confidence 455444 4566665544 45889999999998877766666554323 5888999876542 222221 1234688
Q ss_pred EEeCC
Q 007525 503 VVMNL 507 (600)
Q Consensus 503 VVmNp 507 (600)
+|.+.
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 88753
No 336
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=63.17 E-value=84 Score=31.05 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=49.9
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+++-.|+ .|.++..++ +.|++|+.++-+++..+.+...++.++- ++.++.+|..+. +..+++. ...
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4667776664 455555444 4689999999999888777776665543 477888886542 1222111 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+++|.+|.+.
T Consensus 87 ~~id~vi~~a 96 (256)
T PRK06124 87 GRLDILVNNV 96 (256)
T ss_pred CCCCEEEECC
Confidence 4678888764
No 337
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=63.09 E-value=85 Score=32.45 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=54.3
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+..++| +|..++.+|+. |. .|++++.++...+.+++. +....+...+.+..+.+..+. ....+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~---~~~~~ 237 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELT---GGRGV 237 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHc---CCCCC
Confidence 5678888887665 57777888875 74 899999998877766642 332111111222323333221 23468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|.|+-.-. ....+..+.+.++++
T Consensus 238 d~vld~~g--~~~~~~~~~~~l~~~ 260 (347)
T cd05278 238 DCVIEAVG--FEETFEQAVKVVRPG 260 (347)
T ss_pred cEEEEccC--CHHHHHHHHHHhhcC
Confidence 97764322 224667777777654
No 338
>PRK07831 short chain dehydrogenase; Provisional
Probab=62.96 E-value=79 Score=31.52 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=50.0
Q ss_pred CCCeEEEEee---echHH-HHHHhhCCCEEEEEeCcHHHHHHHHHHHHHc-CCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFA---GVGPI-CIPAAKIVKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfA---GvG~F-aIpaAkkg~~V~AvDiNP~Ave~l~eNaklN-gl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.+.+++=.|+ |+|.- +..++.+|+.|+.+|.+++.++.+.+.++.+ +- .++.++.+|..+. +..+.+. ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567777774 35533 3344567899999999998887777666542 21 2478888887543 2222211 11
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+.+|.+|.+.
T Consensus 95 ~g~id~li~~a 105 (262)
T PRK07831 95 LGRLDVLVNNA 105 (262)
T ss_pred cCCCCEEEECC
Confidence 24689888765
No 339
>PRK07576 short chain dehydrogenase; Provisional
Probab=62.82 E-value=70 Score=32.21 Aligned_cols=79 Identities=18% Similarity=0.043 Sum_probs=46.8
Q ss_pred CCCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+++-.|+ .|.++.. ++..|+.|++++.+++..+.+...+...+ .++.++.+|+.+. +..+++. ...
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567777765 4444444 44568899999999887766655544332 2467788887542 1222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|.+|.+.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 4689988654
No 340
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=62.78 E-value=7.2 Score=38.39 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=20.0
Q ss_pred echHHHHHHh----hCCCEEEEEeCcHHHHHHHH
Q 007525 436 GVGPICIPAA----KIVKRVYANDLNPYAVDYLE 465 (600)
Q Consensus 436 GvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~ 465 (600)
|.|+.++++| +.|.+|+++|+|++-++.++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 6676666555 56899999999999887655
No 341
>PRK05876 short chain dehydrogenase; Provisional
Probab=61.59 E-value=77 Score=32.34 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=47.5
Q ss_pred CCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++-.|++ |.++.. ++++|++|+.++.++..++.+.+.++..+. ++.++.+|+.+. +..+.+. ...+
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5566655543 444444 455689999999999888776665554443 477888887543 1222111 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.|.
T Consensus 83 ~id~li~nA 91 (275)
T PRK05876 83 HVDVVFSNA 91 (275)
T ss_pred CCCEEEECC
Confidence 679888764
No 342
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=61.59 E-value=26 Score=39.80 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=76.2
Q ss_pred CCCeEEEEeeechHHHHHHhh-CC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh-hcCCcccE
Q 007525 426 FKDVVCDVFAGVGPICIPAAK-IV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS-QKAHKITQ 502 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk-kg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~-~~~~~fD~ 502 (600)
.+..++-++=|.|.+...+-. .+ ..++|+|+.|++++.+..+...-.-. +..+.-.|+.+++.+..+. .....||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 345566667777777665543 24 68999999999999999987654433 3456667899998876542 12457898
Q ss_pred EEeCC------------Ccc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCchhHHHHHH
Q 007525 503 VVMNL------------PND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEFDFHERIR 556 (600)
Q Consensus 503 VVmNp------------P~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~di~eRI~ 556 (600)
++.|. |.+ +..+|..+...+.+. |++-++--++...-...+..+++
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~--------g~f~inlv~r~~~~~~~~~~~l~ 432 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPR--------GMFIINLVTRNSSFKDEVLMNLA 432 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCcc--------ceEEEEEecCCcchhHHHHHhhh
Confidence 87642 111 345666777777665 34444444444433334444444
No 343
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=61.27 E-value=49 Score=37.10 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred eechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhc---------CCccc
Q 007525 435 AGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK---------AHKIT 501 (600)
Q Consensus 435 AGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~---------~~~fD 501 (600)
-|-|+.++|+| ++|.+|+|+|||+..++.+.. | ...+..-+..+.+....+.+. -...|
T Consensus 15 iGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d 86 (436)
T COG0677 15 IGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECD 86 (436)
T ss_pred EccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCC
Confidence 37777777766 468899999999999986542 2 234445555555544433210 11467
Q ss_pred EEEeCCCc--c-----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 007525 502 QVVMNLPN--D-----ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSK 543 (600)
Q Consensus 502 ~VVmNpP~--~-----a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k 543 (600)
.+|+--|. . ...++..+.+...+.-+. |.+-+++=+-
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k-----G~LVIlEST~ 130 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKK-----GDLVILESTT 130 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC-----CCEEEEecCC
Confidence 76654332 2 245666665555543222 3566676544
No 344
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=60.67 E-value=89 Score=33.44 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=57.5
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+++|++||=.+ .|+|.+++.+|+. |..++++--+++-.+++++ .|-+.-+.....|..+-++++. .+..+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t---~g~gv 212 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELT---GGKGV 212 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHc---CCCCc
Confidence 67899988887 5899999999996 5577777777766664443 3433223344555555554433 13358
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
| +|.|+-. .+.+......++++
T Consensus 213 D-vv~D~vG--~~~~~~~l~~l~~~ 234 (326)
T COG0604 213 D-VVLDTVG--GDTFAASLAALAPG 234 (326)
T ss_pred e-EEEECCC--HHHHHHHHHHhccC
Confidence 8 4556544 23445566666654
No 345
>PRK06139 short chain dehydrogenase; Provisional
Probab=60.55 E-value=73 Score=33.90 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=50.7
Q ss_pred CCCeEEEEee--ech-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFA--GVG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfA--GvG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
.+.+|+=.|+ |+| .++..++++|++|+.++-+++.++.+.+.++..+. ++.++..|+.+. +..+.+. ...+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3566776665 333 23334455789999999999999888888776654 367777887532 2222211 0135
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|-
T Consensus 84 ~iD~lVnnA 92 (330)
T PRK06139 84 RIDVWVNNV 92 (330)
T ss_pred CCCEEEECC
Confidence 689988764
No 346
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=59.64 E-value=81 Score=32.75 Aligned_cols=101 Identities=18% Similarity=0.044 Sum_probs=55.3
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCE-EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKR-VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~-V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+=.++| +|.+++.+|+. |++ |++++.+++-.+.+++ .|.+.-+.....+ .+.+..+. ....+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SGAGA 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CCCCC
Confidence 5678888777553 44555556654 776 9999999988777643 3443211111112 22222221 13368
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
|+|+--. . ....+..+.++++.+ +++..+.+.
T Consensus 233 d~vid~~-g-~~~~~~~~~~~l~~~--------G~~v~~g~~ 264 (339)
T cd08239 233 DVAIECS-G-NTAARRLALEAVRPW--------GRLVLVGEG 264 (339)
T ss_pred CEEEECC-C-CHHHHHHHHHHhhcC--------CEEEEEcCC
Confidence 8666432 2 233556667777765 456555553
No 347
>PRK06194 hypothetical protein; Provisional
Probab=59.03 E-value=80 Score=31.86 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=47.0
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+||=.| |.|.++..++ ++|++|+.+|.+++..+.+...+...+. ++.++.+|+.+. +..+.+. ...+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45666444 4455555544 4688999999998877666555544333 478899998543 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+.
T Consensus 83 ~id~vi~~A 91 (287)
T PRK06194 83 AVHLLFNNA 91 (287)
T ss_pred CCCEEEECC
Confidence 578887654
No 348
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=58.39 E-value=1.4e+02 Score=29.04 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.++++|+..++| +|..++.+++. |.+|++++.+++..+.++.. +....+.....+....+. .. ....+|
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~---~~~~~d 203 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LT---GGGGAD 203 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-Hh---cCCCCC
Confidence 4788999999988 47777777764 78999999999888777542 322111111122222221 11 245699
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
.|+-.-.. ...+..+...+++.
T Consensus 204 ~vi~~~~~--~~~~~~~~~~l~~~ 225 (271)
T cd05188 204 VVIDAVGG--PETLAQALRLLRPG 225 (271)
T ss_pred EEEECCCC--HHHHHHHHHhcccC
Confidence 88865433 13456666677654
No 349
>PRK06949 short chain dehydrogenase; Provisional
Probab=57.92 E-value=96 Score=30.57 Aligned_cols=79 Identities=16% Similarity=0.040 Sum_probs=48.3
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+|+-.| |+|.++..++ +.|++|++++.+++.++.+...+...+ .++.++.+|+.+. +..+.+. ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 356677666 4555555544 458899999999998887777654433 2477888887432 1111110 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.+|.+-
T Consensus 85 ~~~d~li~~a 94 (258)
T PRK06949 85 GTIDILVNNS 94 (258)
T ss_pred CCCCEEEECC
Confidence 4678888754
No 350
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=57.85 E-value=1.2e+02 Score=31.42 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|+.||..++| +|..++.+|+. |.+|+++.-+++..+.+++ .+.+.-+.....+..+.+..+. ....+|
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~~vd 229 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---DGEGAD 229 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---CCCCCC
Confidence 6788888888766 47788888875 8899999999888887743 2332111111223333333222 234588
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+++..- .....+..+.+.++..
T Consensus 230 ~vld~~--g~~~~~~~~~~~l~~~ 251 (337)
T cd08261 230 VVIDAT--GNPASMEEAVELVAHG 251 (337)
T ss_pred EEEECC--CCHHHHHHHHHHHhcC
Confidence 777642 1234566667777654
No 351
>PRK07478 short chain dehydrogenase; Provisional
Probab=57.69 E-value=1.1e+02 Score=30.29 Aligned_cols=76 Identities=14% Similarity=-0.034 Sum_probs=48.4
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH------HHHHHHhhc
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQK 496 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~------l~~l~~~~~ 496 (600)
+.+++=.|+ .|.++..++ +.|.+|+.++-++...+.+...++..+. ++.++.+|..+. +..+.+ .
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~--~ 80 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVE--R 80 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHH--h
Confidence 456665544 455544444 4688999999999988887776665442 477888887543 222221 1
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+.+|++|.|-
T Consensus 81 ~~~id~li~~a 91 (254)
T PRK07478 81 FGGLDIAFNNA 91 (254)
T ss_pred cCCCCEEEECC
Confidence 34689988754
No 352
>PRK06720 hypothetical protein; Provisional
Probab=57.56 E-value=1.2e+02 Score=29.20 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=47.3
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
.+.+++-.|++.| .++..+++.|.+|+.+|.++...+.+.+.+...+ ..+.++..|..+. +..+.+. ...+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4667777776543 2444455678999999999887766655554323 2366778886432 1221110 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.|-
T Consensus 93 ~iDilVnnA 101 (169)
T PRK06720 93 RIDMLFQNA 101 (169)
T ss_pred CCCEEEECC
Confidence 678888764
No 353
>PRK07326 short chain dehydrogenase; Provisional
Probab=57.16 E-value=84 Score=30.52 Aligned_cols=76 Identities=11% Similarity=-0.033 Sum_probs=47.8
Q ss_pred CCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.+|+-.| |+|.++..+++ +|.+|++++.++.....+...+... .++.++.+|..+.- ....+. ....
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56677666 46666666654 5889999999998887776665433 34888888865431 111111 0123
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
.+|.||.+
T Consensus 82 ~~d~vi~~ 89 (237)
T PRK07326 82 GLDVLIAN 89 (237)
T ss_pred CCCEEEEC
Confidence 67888864
No 354
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=57.13 E-value=1e+02 Score=30.79 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=41.1
Q ss_pred HHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCcccEEEeCC
Q 007525 440 ICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKITQVVMNL 507 (600)
Q Consensus 440 FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~fD~VVmNp 507 (600)
++..++++|++|+.++.+++.++.+.+.++..+ ++.++.+|+.+. +..+++. ...+.+|++|.|.
T Consensus 16 ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~na 84 (259)
T PRK08340 16 VARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 344445578999999999988877776665432 377888887432 2222211 0135689888753
No 355
>PRK07791 short chain dehydrogenase; Provisional
Probab=57.09 E-value=88 Score=32.12 Aligned_cols=78 Identities=22% Similarity=0.079 Sum_probs=46.7
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcH---------HHHHHHHHHHHHcCCCCcEEEEEcChHHH------
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNP---------YAVDYLERNSVLNKLEKKIEVFNMDGRRF------ 487 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP---------~Ave~l~eNaklNgl~nrV~~i~gDare~------ 487 (600)
.+.+++-.|++.| .++..+++.|++|+.++.+. +..+.+.+.++..+. ++.++..|+.+.
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHHH
Confidence 4667777776543 23344556789999998875 555555555544332 477788887542
Q ss_pred HHHHHHhhcCCcccEEEeCC
Q 007525 488 IDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 488 l~~l~~~~~~~~fD~VVmNp 507 (600)
+..+.+ ..+.+|.+|.|.
T Consensus 83 ~~~~~~--~~g~id~lv~nA 100 (286)
T PRK07791 83 VDAAVE--TFGGLDVLVNNA 100 (286)
T ss_pred HHHHHH--hcCCCCEEEECC
Confidence 222222 135689888763
No 356
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=56.26 E-value=93 Score=32.27 Aligned_cols=89 Identities=8% Similarity=0.022 Sum_probs=55.3
Q ss_pred CCCC--CeEEEEee--echHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc---ChHHHHHHHHHh
Q 007525 424 FNFK--DVVCDVFA--GVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM---DGRRFIDAMFAS 494 (600)
Q Consensus 424 l~~g--e~VLDlfA--GvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g---Dare~l~~l~~~ 494 (600)
+.+| ++|+=.++ |+|.+++.+|+. |+ +|++++-+++-.+.+++. .|.+. ++.. |..+.+..+.
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~---vi~~~~~~~~~~i~~~~-- 221 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDA---AINYKTDNVAERLRELC-- 221 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcE---EEECCCCCHHHHHHHHC--
Confidence 4555 78877764 789999988885 77 899999999887777653 34432 2322 3333333321
Q ss_pred hcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 495 QKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 495 ~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
...+|.|+ |.-... .+..+...++++
T Consensus 222 --~~gvd~vi-d~~g~~--~~~~~~~~l~~~ 247 (345)
T cd08293 222 --PEGVDVYF-DNVGGE--ISDTVISQMNEN 247 (345)
T ss_pred --CCCceEEE-ECCCcH--HHHHHHHHhccC
Confidence 24588766 433222 246677777765
No 357
>PRK05866 short chain dehydrogenase; Provisional
Probab=55.88 E-value=1.1e+02 Score=31.54 Aligned_cols=78 Identities=14% Similarity=0.000 Sum_probs=48.4
Q ss_pred CCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+|+=.|+ .|.++.. +++.|++|++++.+++..+.+.+.+...+. .+.++.+|+.+. +..+.+. ...+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456766664 3444444 445689999999999888777666654332 477888887542 2222211 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.+.
T Consensus 117 ~id~li~~A 125 (293)
T PRK05866 117 GVDILINNA 125 (293)
T ss_pred CCCEEEECC
Confidence 689988764
No 358
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.67 E-value=82 Score=31.54 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=44.6
Q ss_pred CCCeEEEEeee----ch-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFAG----VG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfAG----vG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.|.+++-.|++ +| .++..+++.|++|+.++.|....+.+++. ++ ..+.++..|+.+. +..+.+. ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD--EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc--CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 46778888864 55 34555566799999998885433333221 22 2477888887542 2222211 01
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+++|++|.|.
T Consensus 81 ~g~iD~lv~nA 91 (252)
T PRK06079 81 VGKIDGIVHAI 91 (252)
T ss_pred hCCCCEEEEcc
Confidence 35689888653
No 359
>PRK07109 short chain dehydrogenase; Provisional
Probab=55.44 E-value=1.2e+02 Score=32.16 Aligned_cols=78 Identities=14% Similarity=-0.027 Sum_probs=48.9
Q ss_pred CCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+|+=.|+ +|.++..+ +++|++|+.++-+++.++.+.+.++..+. ++.++.+|+.+. +..+.+. ...+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 455665554 34444444 45689999999999988888777765443 478888887543 2222110 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|-
T Consensus 85 ~iD~lInnA 93 (334)
T PRK07109 85 PIDTWVNNA 93 (334)
T ss_pred CCCEEEECC
Confidence 689888764
No 360
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=55.12 E-value=17 Score=37.64 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=33.5
Q ss_pred HHHHhcCCC-CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHH
Q 007525 418 QRLLSGFNF-KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVD 462 (600)
Q Consensus 418 ~Riv~~l~~-ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave 462 (600)
.+|...+.. ..+.+|.|||.|..++.+.. ..++.+|+|++.+.
T Consensus 16 ~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~ 59 (266)
T TIGR00571 16 PEIKKHLPKNFNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLIN 59 (266)
T ss_pred HHHHHhcCcccCEEEEecCCcchhheeecC--cEEEEecCCHHHHH
Confidence 456666654 46899999999999986543 46899999998875
No 361
>PRK07890 short chain dehydrogenase; Provisional
Probab=54.94 E-value=1.4e+02 Score=29.43 Aligned_cols=79 Identities=11% Similarity=-0.081 Sum_probs=48.5
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+|+=.| |+|.++..+| ++|++|+.++.++...+.+...+...+ .++.++..|..+. +..+++. ...
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 355666444 4555555544 468999999999988777666555433 2478888887542 2222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.||.+.
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 4689888754
No 362
>PRK08303 short chain dehydrogenase; Provisional
Probab=54.81 E-value=94 Score=32.56 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=46.0
Q ss_pred CCCeEEEEeeechHHHHH----HhhCCCEEEEEeCcH----------HHHHHHHHHHHHcCCCCcEEEEEcChHHH--HH
Q 007525 426 FKDVVCDVFAGVGPICIP----AAKIVKRVYANDLNP----------YAVDYLERNSVLNKLEKKIEVFNMDGRRF--ID 489 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP----------~Ave~l~eNaklNgl~nrV~~i~gDare~--l~ 489 (600)
.|.+++-.|++.| ++.. +++.|++|+.++.+. +.++.+.+.++..+ .++.++.+|+.+. +.
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVR 83 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHH
Confidence 3667877776443 4444 445689999998873 44444544444433 2467788887543 22
Q ss_pred HHHHh--hcCCcccEEEeCC
Q 007525 490 AMFAS--QKAHKITQVVMNL 507 (600)
Q Consensus 490 ~l~~~--~~~~~fD~VVmNp 507 (600)
.+.+. ...+.+|++|.|.
T Consensus 84 ~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHcCCccEEEECC
Confidence 22211 0135689888875
No 363
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=54.23 E-value=1.3e+02 Score=30.06 Aligned_cols=80 Identities=20% Similarity=0.055 Sum_probs=50.0
Q ss_pred CCCeEEEEeee--ch-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 426 FKDVVCDVFAG--VG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAG--vG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
.+.+++-.|++ +| .++..++..|++|+..+.+++.++.+..+.+..+. ++.++.+|..+.- ..++.. ...+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 35566666654 33 23444556789999999999988887777765432 4788889875432 222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.+.
T Consensus 87 ~id~li~~a 95 (265)
T PRK07097 87 VIDILVNNA 95 (265)
T ss_pred CCCEEEECC
Confidence 689888654
No 364
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.15 E-value=1.1e+02 Score=31.36 Aligned_cols=79 Identities=14% Similarity=0.007 Sum_probs=44.3
Q ss_pred CCCeEEEEee----ech-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFA----GVG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfA----GvG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.+.+++=.|+ |+| .++..+++.|++|+..+.|...-+.+++-.+..+ .. .++.+|+.+. +..+.+. ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 4678888886 445 3445556679999999998643333333222222 22 4677787543 2222211 11
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+++|++|.|.
T Consensus 81 ~g~iDilVnnA 91 (274)
T PRK08415 81 LGKIDFIVHSV 91 (274)
T ss_pred cCCCCEEEECC
Confidence 35789888663
No 365
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=54.06 E-value=25 Score=37.09 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=44.5
Q ss_pred EEEecCeeeecChhHHHH-HHHHh----cCC-CCCeEEEEeeech--HHHHHHh--hC-------CCEEEEEeCcHHHHH
Q 007525 400 LFRCFDTIYWNSKLATER-QRLLS----GFN-FKDVVCDVFAGVG--PICIPAA--KI-------VKRVYANDLNPYAVD 462 (600)
Q Consensus 400 F~vD~~kfy~n~Rl~tEr-~Riv~----~l~-~ge~VLDlfAGvG--~FaIpaA--kk-------g~~V~AvDiNP~Ave 462 (600)
+.++.+.||+++-.-.+- ..++. .-. .--+|+-++|++| +.+|+++ .. ..+|+|.||+..+++
T Consensus 64 ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~ 143 (268)
T COG1352 64 LTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE 143 (268)
T ss_pred hhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH
Confidence 344556788876433222 23332 111 2457999999999 5665554 32 258999999999999
Q ss_pred HHHHHH
Q 007525 463 YLERNS 468 (600)
Q Consensus 463 ~l~eNa 468 (600)
.|+..+
T Consensus 144 ~A~~G~ 149 (268)
T COG1352 144 KARAGI 149 (268)
T ss_pred HHhcCC
Confidence 988643
No 366
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=53.50 E-value=44 Score=31.17 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=50.4
Q ss_pred EEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcc-------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCch
Q 007525 477 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND-------ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFSKARDPEF 549 (600)
Q Consensus 477 V~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~-------a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~k~~d~~~ 549 (600)
++++.||+++.++++ ...+|.|.+|+-.- ..+++..+.++++++ +++--|+ .+
T Consensus 33 L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~--------~~l~Tys--~a----- 92 (124)
T PF05430_consen 33 LTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPG--------GTLATYS--SA----- 92 (124)
T ss_dssp EEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEE--------EEEEES----B-----
T ss_pred EEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCC--------cEEEEee--ch-----
Confidence 678999999999864 36799999997332 358999999998875 3454444 32
Q ss_pred hHHHHHHHHHhhcccceEEEEeEEecCCCcEEEE
Q 007525 550 DFHERIRIALVEVAVNVEMRRVRLVAPGKWMLCA 583 (600)
Q Consensus 550 di~eRI~~~L~~~~~~~~v~~VR~VAP~K~mycv 583 (600)
..++..|... +..+.++..+.....|...
T Consensus 93 ---~~Vr~~L~~a--GF~v~~~~g~g~Kr~~~~a 121 (124)
T PF05430_consen 93 ---GAVRRALQQA--GFEVEKVPGFGRKREMLRA 121 (124)
T ss_dssp ---HHHHHHHHHC--TEEEEEEE-STTSSEEEEE
T ss_pred ---HHHHHHHHHc--CCEEEEcCCCCCcchheEE
Confidence 2255566543 4667777776555555544
No 367
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=53.17 E-value=69 Score=35.02 Aligned_cols=77 Identities=17% Similarity=0.085 Sum_probs=50.6
Q ss_pred CCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccE
Q 007525 427 KDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 502 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~ 502 (600)
...|+ -||.|.+|..+++ .|..|+.+|.+|+.++.+++.. .+ +.++.||+.+.- .+.+. .-..+|.
T Consensus 231 ~~~ii--IiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~-~~~i~gd~~~~~-~L~~~-~~~~a~~ 300 (453)
T PRK09496 231 VKRVM--IVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PN-TLVLHGDGTDQE-LLEEE-GIDEADA 300 (453)
T ss_pred CCEEE--EECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CC-CeEEECCCCCHH-HHHhc-CCccCCE
Confidence 34454 4566888877776 3679999999999998777642 22 678999986541 12111 2356888
Q ss_pred EEeCCCcchHH
Q 007525 503 VVMNLPNDATE 513 (600)
Q Consensus 503 VVmNpP~~a~e 513 (600)
|++-.+.....
T Consensus 301 vi~~~~~~~~n 311 (453)
T PRK09496 301 FIALTNDDEAN 311 (453)
T ss_pred EEECCCCcHHH
Confidence 88877765433
No 368
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.68 E-value=93 Score=31.36 Aligned_cols=77 Identities=12% Similarity=-0.030 Sum_probs=42.7
Q ss_pred CCCeEEEEeeec-hHHHHH----HhhCCCEEEEEeCcH---HHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh-
Q 007525 426 FKDVVCDVFAGV-GPICIP----AAKIVKRVYANDLNP---YAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS- 494 (600)
Q Consensus 426 ~ge~VLDlfAGv-G~FaIp----aAkkg~~V~AvDiNP---~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~- 494 (600)
.|.+++-.|++. +.++.. +++.|++|+..+.+. +.++.+...+ ++ .++.++..|+.+. +..+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~--~~--~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL--EG--QESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc--CC--CceEEEecCCCCHHHHHHHHHHH
Confidence 467888888752 444444 445688999886553 3444333222 12 3477888887543 2222211
Q ss_pred -hcCCcccEEEeC
Q 007525 495 -QKAHKITQVVMN 506 (600)
Q Consensus 495 -~~~~~fD~VVmN 506 (600)
...+++|.+|.|
T Consensus 82 ~~~~g~ld~lv~n 94 (257)
T PRK08594 82 KEEVGVIHGVAHC 94 (257)
T ss_pred HHhCCCccEEEEC
Confidence 013578988865
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=52.60 E-value=1.9e+02 Score=31.51 Aligned_cols=95 Identities=13% Similarity=0.059 Sum_probs=57.5
Q ss_pred CCCCCeEEEEe--eechHHHHHHhhC-C---CEEEEEeCcHHHHHHHHHHHH----HcCCCCcEEEEE----cChHHHHH
Q 007525 424 FNFKDVVCDVF--AGVGPICIPAAKI-V---KRVYANDLNPYAVDYLERNSV----LNKLEKKIEVFN----MDGRRFID 489 (600)
Q Consensus 424 l~~ge~VLDlf--AGvG~FaIpaAkk-g---~~V~AvDiNP~Ave~l~eNak----lNgl~nrV~~i~----gDare~l~ 489 (600)
+++|++|+=.+ .|+|.+++.+|+. | .+|+++|.+++-++.+++... .+|.. ..+++ .|..+.+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHH
Confidence 56788888776 3588888888885 3 289999999999998877421 11221 12332 12333333
Q ss_pred HHHHhhcCCcccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 490 AMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 490 ~l~~~~~~~~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
.+. ....+|.|+..-.. ...+..+..+++++
T Consensus 251 ~~t---~g~g~D~vid~~g~--~~~~~~a~~~l~~~ 281 (410)
T cd08238 251 ELT---GGQGFDDVFVFVPV--PELVEEADTLLAPD 281 (410)
T ss_pred HHh---CCCCCCEEEEcCCC--HHHHHHHHHHhccC
Confidence 322 23458988765322 24556667777654
No 370
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.59 E-value=1.2e+02 Score=29.85 Aligned_cols=78 Identities=19% Similarity=-0.003 Sum_probs=49.8
Q ss_pred CCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.+|| +..|+|.++..+++ +|.+|++++.++...+.+...++..+. ++.++.+|..+.- ..+.+. ...+
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34555 44456777777776 478999999999988877766665443 4788888875431 122111 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+-
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 689888653
No 371
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.56 E-value=1.4e+02 Score=29.43 Aligned_cols=78 Identities=15% Similarity=-0.006 Sum_probs=46.9
Q ss_pred CCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.++|=.| |+|.++..+ +++|.+|++++.+++..+.+.+.+...+ .++.++.+|..+.- ..+++. ....
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 55666444 444555444 4468899999999988777766654433 34788889875432 222111 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+.
T Consensus 84 ~~d~vi~~a 92 (262)
T PRK13394 84 SVDILVSNA 92 (262)
T ss_pred CCCEEEECC
Confidence 578887643
No 372
>PRK10037 cell division protein; Provisional
Probab=51.32 E-value=83 Score=31.87 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=16.7
Q ss_pred HHHHHhhCCCEEEEEeCcHHH
Q 007525 440 ICIPAAKIVKRVYANDLNPYA 460 (600)
Q Consensus 440 FaIpaAkkg~~V~AvDiNP~A 460 (600)
+|..+|++|++|..+|++|..
T Consensus 22 LA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 22 LAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred HHHHHHhcCCcEEEEeCChhh
Confidence 345566779999999999975
No 373
>PRK08251 short chain dehydrogenase; Provisional
Probab=51.12 E-value=1.7e+02 Score=28.74 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=49.1
Q ss_pred CeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCCc
Q 007525 428 DVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 499 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~~ 499 (600)
.+++-.| |+|.++..++ +.|++|+.++-++...+.+...+....-..++.++.+|..+.- ..+++. ...+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4566555 4666666555 4588999999999988877766554322235888888876532 222111 01346
Q ss_pred ccEEEeCC
Q 007525 500 ITQVVMNL 507 (600)
Q Consensus 500 fD~VVmNp 507 (600)
+|+||.+-
T Consensus 82 id~vi~~a 89 (248)
T PRK08251 82 LDRVIVNA 89 (248)
T ss_pred CCEEEECC
Confidence 89888764
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=50.93 E-value=1.4e+02 Score=30.11 Aligned_cols=77 Identities=17% Similarity=0.060 Sum_probs=44.3
Q ss_pred CCeEEEEeeechHHHH----HHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICI----PAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaI----paAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.++|=.|++ |.++. .++++|++|++++.+ ...+.+.+.++..+ .++.++.+|+.+. +..+.+. ...+
T Consensus 6 ~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5566666653 33344 455578999999999 55555555554433 2477888887543 1222111 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|.
T Consensus 82 ~id~li~~A 90 (272)
T PRK08589 82 RVDVLFNNA 90 (272)
T ss_pred CcCEEEECC
Confidence 689888764
No 375
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=50.86 E-value=1.3e+02 Score=29.65 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=50.8
Q ss_pred CCCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+||=.| |.|.++..+++ .|++|+..+-++...+.+...++..+. ++.++.+|..+. +..+++. ...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 456777666 45666666554 588999999999888877777665443 477888887542 2222211 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
...|.+|.+.
T Consensus 86 ~~~d~li~~a 95 (255)
T PRK07523 86 GPIDILVNNA 95 (255)
T ss_pred CCCCEEEECC
Confidence 4688888764
No 376
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.83 E-value=1e+02 Score=30.94 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=44.8
Q ss_pred CCCeEEEEeeech-HHH----HHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH------HHHHHHh
Q 007525 426 FKDVVCDVFAGVG-PIC----IPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFAS 494 (600)
Q Consensus 426 ~ge~VLDlfAGvG-~Fa----IpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~------l~~l~~~ 494 (600)
.|.+++-.|++.| .++ ..+++.|++|+.++.+....+.+++-.+. +.. +.++.+|+.+. +..+.+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~--~~~-~~~~~~D~~~~~~v~~~~~~~~~- 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE--LDA-PIFLPLDVREPGQLEAVFARIAE- 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh--hcc-ceEEecCcCCHHHHHHHHHHHHH-
Confidence 4678888887542 444 44555689999999987654433332222 222 45677786432 222222
Q ss_pred hcCCcccEEEeCC
Q 007525 495 QKAHKITQVVMNL 507 (600)
Q Consensus 495 ~~~~~fD~VVmNp 507 (600)
..+.+|++|.|.
T Consensus 85 -~~g~ld~lv~nA 96 (258)
T PRK07533 85 -EWGRLDFLLHSI 96 (258)
T ss_pred -HcCCCCEEEEcC
Confidence 135689888763
No 377
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=50.48 E-value=6.1 Score=40.58 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=62.2
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEe
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 505 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVm 505 (600)
...++||+|||-|-++..++-.-.+|||-|++..+...+++- +.. |-. +.++.. .+-++|+|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk----~yn--Vl~----~~ew~~------t~~k~dli~c 175 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK----NYN--VLT----EIEWLQ------TDVKLDLILC 175 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc----CCc--eee----ehhhhh------cCceeehHHH
Confidence 346899999999999999887767899999999988877642 111 110 111211 1223554432
Q ss_pred -CC---CcchHHHHHHHHHHhcCCCCCC----CCCccEEEEEeccCC
Q 007525 506 -NL---PNDATEFLDAFRGIYRDRPEDA----KFTFPKIHLYGFSKA 544 (600)
Q Consensus 506 -Np---P~~a~eFLdaa~~lLk~~~~~g----~~~~p~IHvY~F~k~ 544 (600)
|+ =......|+.+..++.+. .| ..-+|+.|+.+|...
T Consensus 176 lNlLDRc~~p~kLL~Di~~vl~ps--ngrvivaLVLP~~hYVE~N~~ 220 (288)
T KOG3987|consen 176 LNLLDRCFDPFKLLEDIHLVLAPS--NGRVIVALVLPYMHYVETNTS 220 (288)
T ss_pred HHHHHhhcChHHHHHHHHHHhccC--CCcEEEEEEecccceeecCCC
Confidence 21 122346677777778764 12 122577888887554
No 378
>PRK07024 short chain dehydrogenase; Provisional
Probab=50.30 E-value=1.2e+02 Score=30.23 Aligned_cols=74 Identities=16% Similarity=-0.000 Sum_probs=43.6
Q ss_pred eEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCcc
Q 007525 429 VVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 500 (600)
Q Consensus 429 ~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~f 500 (600)
+|+=.|+ +|.++.. ++++|++|+.++.+++..+.+.+.+...+ ++.++.+|..+. +.++.+. ...+.+
T Consensus 4 ~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 4 KVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred EEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 4444443 4444444 44568899999999988776655443222 488888887542 2222111 012457
Q ss_pred cEEEeC
Q 007525 501 TQVVMN 506 (600)
Q Consensus 501 D~VVmN 506 (600)
|.+|.|
T Consensus 80 d~lv~~ 85 (257)
T PRK07024 80 DVVIAN 85 (257)
T ss_pred CEEEEC
Confidence 988865
No 379
>PRK06125 short chain dehydrogenase; Provisional
Probab=50.25 E-value=1.4e+02 Score=29.79 Aligned_cols=77 Identities=18% Similarity=0.006 Sum_probs=48.7
Q ss_pred CCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcc
Q 007525 427 KDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKI 500 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~f 500 (600)
+.+++=.|+ +|.++..+ ++.|++|++++.+++..+.+...+.... ..++.++.+|..+. +..+.+. .+.+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~--~g~i 82 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAE--AGDI 82 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHH--hCCC
Confidence 566666664 44455444 4568899999999988877766665432 22477888887542 2233321 3568
Q ss_pred cEEEeCC
Q 007525 501 TQVVMNL 507 (600)
Q Consensus 501 D~VVmNp 507 (600)
|.+|.+.
T Consensus 83 d~lv~~a 89 (259)
T PRK06125 83 DILVNNA 89 (259)
T ss_pred CEEEECC
Confidence 9888764
No 380
>PRK09186 flagellin modification protein A; Provisional
Probab=50.13 E-value=1.8e+02 Score=28.50 Aligned_cols=81 Identities=19% Similarity=0.080 Sum_probs=48.9
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+|+=.|+ +|.++..+| +.|.+|+.++.+++..+.+...+....-...+.++.+|+.+. +..+++. ...
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 3556666665 344555544 458899999999988887777664432222366778887542 2222211 112
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|+||.+-
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 4589998764
No 381
>PRK08265 short chain dehydrogenase; Provisional
Probab=49.76 E-value=1.4e+02 Score=30.00 Aligned_cols=75 Identities=12% Similarity=-0.000 Sum_probs=44.1
Q ss_pred CCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++-.|+ +|.++.. +++.|++|+.++.+++..+.+.+-+ ..++.++.+|+.+. +..+++. ...+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 556666664 3444444 4456899999999987655544332 23477888887543 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|.
T Consensus 80 ~id~lv~~a 88 (261)
T PRK08265 80 RVDILVNLA 88 (261)
T ss_pred CCCEEEECC
Confidence 689888764
No 382
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=49.59 E-value=27 Score=36.88 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC--C-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk--g-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
+++|++|+-.||| +|.+++.+|++ | ++|+++|.+++-.+.+++ .+. ...+ + +... ...
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~~~-------~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DIPE-------DLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hhhh-------ccC
Confidence 4679999988764 44445555553 3 589999999988887764 121 1111 1 1111 123
Q ss_pred ccEEEeCCCcc-hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 500 ITQVVMNLPND-ATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 500 fD~VVmNpP~~-a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
+|+|+=--... ....++.+.++++++ +++.++.+.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~--------G~iv~~G~~ 258 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQ--------GTIGLMGVS 258 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCC--------cEEEEEeec
Confidence 78665322211 234567778888775 466666654
No 383
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=49.46 E-value=56 Score=30.92 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=53.7
Q ss_pred EEEEeeechHHHHH--HhhCCCEEEEEeCcHHHHHHHHHHHHHcCC-------CCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 430 VCDVFAGVGPICIP--AAKIVKRVYANDLNPYAVDYLERNSVLNKL-------EKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 430 VLDlfAGvG~FaIp--aAkkg~~V~AvDiNP~Ave~l~eNaklNgl-------~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
|.=+|||.++.++. ++.+|..|+-...+++.++.++++-. |.. ..++. +..|..+.++ ..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~~i~-~t~dl~~a~~---------~a 70 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPENIK-ATTDLEEALE---------DA 70 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEETTEE-EESSHHHHHT---------T-
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCcccc-cccCHHHHhC---------cc
Confidence 55567777766554 34568899999999999999888754 321 12354 3567766652 47
Q ss_pred cEEEeCCCcchH-HHHHHHHHHhcC
Q 007525 501 TQVVMNLPNDAT-EFLDAFRGIYRD 524 (600)
Q Consensus 501 D~VVmNpP~~a~-eFLdaa~~lLk~ 524 (600)
|.|++-.|..+. ++++.+...+++
T Consensus 71 d~IiiavPs~~~~~~~~~l~~~l~~ 95 (157)
T PF01210_consen 71 DIIIIAVPSQAHREVLEQLAPYLKK 95 (157)
T ss_dssp SEEEE-S-GGGHHHHHHHHTTTSHT
T ss_pred cEEEecccHHHHHHHHHHHhhccCC
Confidence 999999998764 455665555544
No 384
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.45 E-value=1.6e+02 Score=28.75 Aligned_cols=78 Identities=10% Similarity=-0.071 Sum_probs=49.1
Q ss_pred CCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++-.| |+|.++..+++ +|++|++++.++...+.+...++..+ .++.++.+|..+. +..+++. ....
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45666666 46666666554 58899999999988777666655433 3588888887443 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+.
T Consensus 84 ~id~vi~~a 92 (239)
T PRK07666 84 SIDILINNA 92 (239)
T ss_pred CccEEEEcC
Confidence 689888764
No 385
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=49.25 E-value=73 Score=32.48 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=56.0
Q ss_pred eecChhHHHHHHHHhcCCCCCeEEEEeeechHHHHHHhhC------CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEE
Q 007525 408 YWNSKLATERQRLLSGFNFKDVVCDVFAGVGPICIPAAKI------VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN 481 (600)
Q Consensus 408 y~n~Rl~tEr~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk------g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~ 481 (600)
.+.+.-..--++++-.++ -++|+++|.--|+=++..|+. .++|+++|++........ ++...+..+|++++
T Consensus 15 ~q~P~Dm~~~qeli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~ 91 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQ 91 (206)
T ss_dssp SS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEE
T ss_pred hcCHHHHHHHHHHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEE
Confidence 344433332245554455 479999999999988877752 369999999543332111 11123446799999
Q ss_pred cChHHHH--HHHHHhhcCCcccEEEeCCCc---chHHHHHHHHHHhcCC
Q 007525 482 MDGRRFI--DAMFASQKAHKITQVVMNLPN---DATEFLDAFRGIYRDR 525 (600)
Q Consensus 482 gDare~l--~~l~~~~~~~~fD~VVmNpP~---~a~eFLdaa~~lLk~~ 525 (600)
||..+.- .+............||.|-=. ....-|.....+++++
T Consensus 92 Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G 140 (206)
T PF04989_consen 92 GDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPG 140 (206)
T ss_dssp S-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT
T ss_pred CCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCC
Confidence 9986532 111100012345678888652 2345566667777665
No 386
>PHA02518 ParA-like protein; Provisional
Probab=49.17 E-value=37 Score=32.69 Aligned_cols=60 Identities=20% Similarity=0.092 Sum_probs=31.4
Q ss_pred HHhhCCCEEEEEeCcHHH--HHHHHHHHHHcCCCCcEEEEE--cChHHHHHHHHHhhcCCcccEEEeCCCcc
Q 007525 443 PAAKIVKRVYANDLNPYA--VDYLERNSVLNKLEKKIEVFN--MDGRRFIDAMFASQKAHKITQVVMNLPND 510 (600)
Q Consensus 443 paAkkg~~V~AvDiNP~A--ve~l~eNaklNgl~nrV~~i~--gDare~l~~l~~~~~~~~fD~VVmNpP~~ 510 (600)
.+|++|.+|..+|++|.. ..|+.. ..++. ..+.... .+..+.+..+ ...||+||+|.|..
T Consensus 24 ~la~~g~~vlliD~D~q~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~~l~~~-----~~~~d~viiD~p~~ 87 (211)
T PHA02518 24 WLHADGHKVLLVDLDPQGSSTDWAEA--REEGE-PLIPVVRMGKSIRADLPKV-----ASGYDYVVVDGAPQ 87 (211)
T ss_pred HHHhCCCeEEEEeCCCCCChHHHHHh--cccCC-CCCchhhccHHHHHHHHHH-----hccCCEEEEeCCCC
Confidence 345578999999999874 333321 11111 1111111 1122333222 24699999998864
No 387
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=49.16 E-value=1.5e+02 Score=29.32 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=50.6
Q ss_pred CCCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.++|=.| |.|.++..+|+ +|++|+.++-+++..+.+...+..++. ++.++.+|..+. +..+++. ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 356677666 55666666554 588999999999888777766655432 477888887642 2222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|.||.+.
T Consensus 88 ~~id~vi~~a 97 (259)
T PRK08213 88 GHVDILVNNA 97 (259)
T ss_pred CCCCEEEECC
Confidence 4689888764
No 388
>PRK12939 short chain dehydrogenase; Provisional
Probab=49.12 E-value=1.6e+02 Score=28.62 Aligned_cols=77 Identities=13% Similarity=-0.005 Sum_probs=48.7
Q ss_pred CCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++ +..|.|+++..+|+ +|++|++++.+++....+...++.-+ .++.++.+|+.+. +..+++. ....
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 55666 44456777777665 58899999999987776665554322 3488899998643 2222211 0124
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
.+|.||.+
T Consensus 84 ~id~vi~~ 91 (250)
T PRK12939 84 GLDGLVNN 91 (250)
T ss_pred CCCEEEEC
Confidence 68988864
No 389
>PRK06197 short chain dehydrogenase; Provisional
Probab=48.93 E-value=1.6e+02 Score=30.29 Aligned_cols=81 Identities=10% Similarity=-0.086 Sum_probs=48.1
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~ 497 (600)
.+.+|+=.| |+|.++..+| ++|.+|+.+.-+++..+.+.+.+....-..++.++.+|+.+.- ..+.+. ...
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 456677555 3455555554 4688999999998877666555543211224788889876542 222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|++|.|-
T Consensus 94 ~~iD~li~nA 103 (306)
T PRK06197 94 PRIDLLINNA 103 (306)
T ss_pred CCCCEEEECC
Confidence 4689888764
No 390
>PRK06914 short chain dehydrogenase; Provisional
Probab=48.89 E-value=65 Score=32.40 Aligned_cols=78 Identities=19% Similarity=0.107 Sum_probs=49.4
Q ss_pred CCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--H---HHHHhhcC
Q 007525 427 KDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--D---AMFASQKA 497 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~---~l~~~~~~ 497 (600)
+.++|-.| |+|.++..+ +++|++|++++-+++..+.+...+...+...+++++.+|..+.- . .+.+ ..
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~--~~ 79 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK--EI 79 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH--hc
Confidence 34555555 344444444 45689999999999888877766665555446889999985532 1 1111 13
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.||.+.
T Consensus 80 ~~id~vv~~a 89 (280)
T PRK06914 80 GRIDLLVNNA 89 (280)
T ss_pred CCeeEEEECC
Confidence 4678888764
No 391
>PRK05599 hypothetical protein; Provisional
Probab=48.83 E-value=1.4e+02 Score=29.80 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=46.0
Q ss_pred EEEEeeechHHHHHHhh---CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH------HHHHHHhhcCCcc
Q 007525 430 VCDVFAGVGPICIPAAK---IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQKAHKI 500 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAk---kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~------l~~l~~~~~~~~f 500 (600)
++-.|++ +.++..+|+ +|.+|+.++-+++.++.+.+.++..+-. .+.++.+|+.+. +..+.+ ..+..
T Consensus 3 vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~--~~g~i 78 (246)
T PRK05599 3 ILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQE--LAGEI 78 (246)
T ss_pred EEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHH--hcCCC
Confidence 4444443 334444433 4889999999999888887777665432 377888887553 222221 13568
Q ss_pred cEEEeCC
Q 007525 501 TQVVMNL 507 (600)
Q Consensus 501 D~VVmNp 507 (600)
|++|.|.
T Consensus 79 d~lv~na 85 (246)
T PRK05599 79 SLAVVAF 85 (246)
T ss_pred CEEEEec
Confidence 9888654
No 392
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.81 E-value=2.1e+02 Score=27.87 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=48.3
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
++.+++-.|+ .|.++..++ ++|.+|+.++.++...+.+.+.++..+ .++.++..|..+. +..+.+. ...
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567776654 455555554 458899999999987776666655433 2477888886432 2222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|.||.+.
T Consensus 81 ~~id~vi~~a 90 (253)
T PRK08217 81 GQLNGLINNA 90 (253)
T ss_pred CCCCEEEECC
Confidence 4689888764
No 393
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=48.72 E-value=13 Score=38.43 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=59.4
Q ss_pred CCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHh-h-cCCcc
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS-Q-KAHKI 500 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~-~-~~~~f 500 (600)
.+|...+||--|.|..+-.+..+. .++||.|-+|-|.+.+..-.... ...++..+.+.. ..++.+++. + .+..+
T Consensus 42 v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~F-s~~~~l~~~~gl~~~~v 119 (303)
T KOG2782|consen 42 VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNF-SYIKSLIADTGLLDVGV 119 (303)
T ss_pred CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhh-HHHHHHHHHhCCCcCCc
Confidence 468999999999999999999875 48999999999999988766311 111122222221 112222221 0 24579
Q ss_pred cEEEeCCCcchHHH
Q 007525 501 TQVVMNLPNDATEF 514 (600)
Q Consensus 501 D~VVmNpP~~a~eF 514 (600)
|-|+||+-.++.+|
T Consensus 120 DGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 120 DGILMDLGCSSMQV 133 (303)
T ss_pred ceEEeecCcccccc
Confidence 99999998876655
No 394
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=48.54 E-value=31 Score=38.09 Aligned_cols=44 Identities=27% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCCCCeEEEEeeechHHHHHHh-hCCCEEEEEeCcHHHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAA-KIVKRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaA-kkg~~V~AvDiNP~Ave~l~eNa 468 (600)
+.++++||-+.+| |--++.++ ...++|+|||+||.-...++=-.
T Consensus 33 i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 6788877766543 43444444 44589999999999888776443
No 395
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.53 E-value=1.3e+02 Score=30.64 Aligned_cols=79 Identities=14% Similarity=-0.040 Sum_probs=45.4
Q ss_pred CCCeEEEEeee----ch-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFAG----VG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfAG----vG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.+.++|-.|++ +| .++..+++.|++|+.++.+....+.+++-.+..+ . ..++.+|+.+. +..+++. ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g--~-~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG--S-DFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC--C-ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 46788888874 44 4566667789999998887654443333322222 1 24577887543 2222211 11
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+.+|++|.|-
T Consensus 83 ~g~iD~lVnnA 93 (271)
T PRK06505 83 WGKLDFVVHAI 93 (271)
T ss_pred hCCCCEEEECC
Confidence 35789888653
No 396
>PRK07035 short chain dehydrogenase; Provisional
Probab=48.45 E-value=1.9e+02 Score=28.45 Aligned_cols=78 Identities=17% Similarity=0.066 Sum_probs=45.8
Q ss_pred CCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.+|+=.|++ |.++.. +++.|.+|+.++.++...+.+.+.+...+. ++.++..|..+.- ..+.+. ...+
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG--KAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4456655544 444444 445688999999999888777766654332 3667777764431 112111 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.+.
T Consensus 85 ~id~li~~a 93 (252)
T PRK07035 85 RLDILVNNA 93 (252)
T ss_pred CCCEEEECC
Confidence 589888544
No 397
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.54 E-value=1.4e+02 Score=31.03 Aligned_cols=40 Identities=23% Similarity=0.027 Sum_probs=29.5
Q ss_pred eEEEEeeechH--HHHHHhhCCCEEEEEeCcHHHHHHHHHHH
Q 007525 429 VVCDVFAGVGP--ICIPAAKIVKRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 429 ~VLDlfAGvG~--FaIpaAkkg~~V~AvDiNP~Ave~l~eNa 468 (600)
.|.=+|+|.=+ ++..+|..|..|+.+|.+++.++.++.++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 46667777543 34444556889999999999998888765
No 398
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=47.46 E-value=35 Score=35.87 Aligned_cols=92 Identities=7% Similarity=-0.109 Sum_probs=55.4
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+++|++|+-.++| +|.+++.+|+. |++|++++.+++-.+.+++ .|.+. +++.+ +. ....+|
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~~~--~~--------~~~~~d 225 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAAS---AGGAY--DT--------PPEPLD 225 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCce---ecccc--cc--------Ccccce
Confidence 6789998887753 56666777764 7799999999998776654 45432 22111 00 012467
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDRPEDAKFTFPKIHLYGFS 542 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~~~~g~~~~p~IHvY~F~ 542 (600)
.++.--.. ...+..+.++++++ |++-++.+.
T Consensus 226 ~~i~~~~~--~~~~~~~~~~l~~~--------G~~v~~G~~ 256 (329)
T TIGR02822 226 AAILFAPA--GGLVPPALEALDRG--------GVLAVAGIH 256 (329)
T ss_pred EEEECCCc--HHHHHHHHHhhCCC--------cEEEEEecc
Confidence 54432111 23567777788765 466666653
No 399
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=47.42 E-value=2.4e+02 Score=29.46 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=52.3
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+-.++| +|.+++.+|+. |. .|+++|.+++..+.+++ .+....+.....+..+.+..+. ....+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CCCCC
Confidence 6678888777654 55566666664 66 69999999988777663 3443211111123222232222 13458
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-.-. ....+..+.+.++++
T Consensus 237 d~vld~~g--~~~~~~~~~~~l~~~ 259 (351)
T cd08285 237 DAVIIAGG--GQDTFEQALKVLKPG 259 (351)
T ss_pred cEEEECCC--CHHHHHHHHHHhhcC
Confidence 86664221 124566777777664
No 400
>PRK08267 short chain dehydrogenase; Provisional
Probab=47.10 E-value=1.2e+02 Score=30.18 Aligned_cols=74 Identities=19% Similarity=0.022 Sum_probs=45.4
Q ss_pred eEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh---hcCCc
Q 007525 429 VVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS---QKAHK 499 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~---~~~~~ 499 (600)
++|-.|+ +|.++..+ +++|.+|++++.+++.++.+...+. ..++.++.+|+.+.- ..+... ...+.
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3455554 34544444 4568899999999998877766543 224888888886532 222211 01356
Q ss_pred ccEEEeCC
Q 007525 500 ITQVVMNL 507 (600)
Q Consensus 500 fD~VVmNp 507 (600)
+|.||.+.
T Consensus 78 id~vi~~a 85 (260)
T PRK08267 78 LDVLFNNA 85 (260)
T ss_pred CCEEEECC
Confidence 89988754
No 401
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=46.86 E-value=1.7e+02 Score=28.47 Aligned_cols=78 Identities=15% Similarity=-0.030 Sum_probs=48.7
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+|+-.| |+|.++..++ ++|.+|++++-++.....+...+...+. ++.++.+|..+. +..++.. ....
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45677555 4566666554 4588999999998877766666654432 378888887543 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+.
T Consensus 83 ~~d~vi~~a 91 (251)
T PRK12826 83 RLDILVANA 91 (251)
T ss_pred CCCEEEECC
Confidence 689888765
No 402
>PRK08339 short chain dehydrogenase; Provisional
Probab=46.68 E-value=71 Score=32.26 Aligned_cols=81 Identities=6% Similarity=-0.003 Sum_probs=49.8
Q ss_pred CCCeEEEEeee--ch-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh-hcCCc
Q 007525 426 FKDVVCDVFAG--VG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS-QKAHK 499 (600)
Q Consensus 426 ~ge~VLDlfAG--vG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~-~~~~~ 499 (600)
.|.++|-.|++ +| .++..+++.|++|+.++.+++..+.+.+.++... ..++.++.+|+.+. +..+.+. ...+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 46677766653 33 2444555678999999999998887777665431 12478888887653 2222211 01246
Q ss_pred ccEEEeCC
Q 007525 500 ITQVVMNL 507 (600)
Q Consensus 500 fD~VVmNp 507 (600)
+|++|.|.
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 89888663
No 403
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=46.59 E-value=1.7e+02 Score=29.01 Aligned_cols=79 Identities=15% Similarity=0.016 Sum_probs=45.5
Q ss_pred CeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCc
Q 007525 428 DVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 499 (600)
Q Consensus 428 e~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~ 499 (600)
.+||-.|+ .|.++.. ++++|+.|+.+|.++...+.+...++.-.-..++.++.+|..+. +..+.++ .....
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45666664 4554444 44568899999999887766655443221112478888887543 2222211 01246
Q ss_pred ccEEEeCC
Q 007525 500 ITQVVMNL 507 (600)
Q Consensus 500 fD~VVmNp 507 (600)
.|.||.+.
T Consensus 82 id~vv~~a 89 (259)
T PRK12384 82 VDLLVYNA 89 (259)
T ss_pred CCEEEECC
Confidence 78888754
No 404
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=46.22 E-value=1.8e+02 Score=28.94 Aligned_cols=77 Identities=14% Similarity=0.044 Sum_probs=45.2
Q ss_pred CCCeEEEEee--echH-HHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFA--GVGP-ICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfA--GvG~-FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
++.+++-.|+ |+|. ++..+++.|+.|+.++-+++.++.+..-. ..++.++.+|+.+. +..++++ ...+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 3566777765 3332 33344556899999999988776554432 23477888887543 2222211 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.|.
T Consensus 80 ~id~li~~a 88 (263)
T PRK06200 80 KLDCFVGNA 88 (263)
T ss_pred CCCEEEECC
Confidence 688888653
No 405
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.14 E-value=37 Score=36.27 Aligned_cols=73 Identities=22% Similarity=0.223 Sum_probs=58.7
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEE
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 503 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~V 503 (600)
+.+|..-+|+||-.|+++-.+.+++-.|||+|--+-+-..+- .+.|+-...|++.|-+. ...+|-.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~d--------tg~v~h~r~DGfk~~P~------r~~idWm 274 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMD--------TGQVTHLREDGFKFRPT------RSNIDWM 274 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhc--------ccceeeeeccCcccccC------CCCCceE
Confidence 678999999999999999999999999999998775544321 23588889999988541 4578999
Q ss_pred EeCCCcc
Q 007525 504 VMNLPND 510 (600)
Q Consensus 504 VmNpP~~ 510 (600)
|+|....
T Consensus 275 VCDmVEk 281 (358)
T COG2933 275 VCDMVEK 281 (358)
T ss_pred EeehhcC
Confidence 9997654
No 406
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=46.10 E-value=15 Score=33.96 Aligned_cols=34 Identities=12% Similarity=-0.092 Sum_probs=28.8
Q ss_pred CCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHH
Q 007525 426 FKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPY 459 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~ 459 (600)
+-...+|+|||.|-+.--+.+.|..=+++|+-..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 3457999999999999999999988889887543
No 407
>PRK09291 short chain dehydrogenase; Provisional
Probab=45.99 E-value=1.5e+02 Score=29.06 Aligned_cols=71 Identities=15% Similarity=0.007 Sum_probs=45.8
Q ss_pred eEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHhhcCCcccE
Q 007525 429 VVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFASQKAHKITQ 502 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~~~~~~fD~ 502 (600)
+||-.|| +|.++..++ +.|++|++..-++...+.+....+..+. .+.++.+|..+.. .... ...+|.
T Consensus 4 ~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~----~~~id~ 76 (257)
T PRK09291 4 TILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAA----EWDVDV 76 (257)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHh----cCCCCE
Confidence 4555554 455555444 4688999999998877777666555443 3788888876542 2222 236899
Q ss_pred EEeC
Q 007525 503 VVMN 506 (600)
Q Consensus 503 VVmN 506 (600)
||.|
T Consensus 77 vi~~ 80 (257)
T PRK09291 77 LLNN 80 (257)
T ss_pred EEEC
Confidence 8886
No 408
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=45.85 E-value=88 Score=36.58 Aligned_cols=80 Identities=18% Similarity=0.077 Sum_probs=51.2
Q ss_pred CCCCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCC-------CCcEEEEEcChHHHHHHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKL-------EKKIEVFNMDGRRFIDAMF 492 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl-------~nrV~~i~gDare~l~~l~ 492 (600)
.+.|.+|+-.|+ .|.+|..++ +.|.+|++++.+++....+..++..+++ ..+++++.+|+.+.- .+.
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e-sI~ 154 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD-QIG 154 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH-HHH
Confidence 346777765554 566665544 4588999999999988777666554332 124888999987642 111
Q ss_pred HhhcCCcccEEEeCC
Q 007525 493 ASQKAHKITQVVMNL 507 (600)
Q Consensus 493 ~~~~~~~fD~VVmNp 507 (600)
+ .-+.+|+||.+.
T Consensus 155 ~--aLggiDiVVn~A 167 (576)
T PLN03209 155 P--ALGNASVVICCI 167 (576)
T ss_pred H--HhcCCCEEEEcc
Confidence 1 124589888764
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=45.64 E-value=1.2e+02 Score=33.67 Aligned_cols=30 Identities=40% Similarity=0.542 Sum_probs=22.0
Q ss_pred eechHHHHHHh----hCCCEEEEEeCcHHHHHHH
Q 007525 435 AGVGPICIPAA----KIVKRVYANDLNPYAVDYL 464 (600)
Q Consensus 435 AGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l 464 (600)
-|.|+.+.++| +.|..|+++|.|++.++.+
T Consensus 9 IGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 9 IGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred ECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 35555555544 4588999999999998864
No 410
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.34 E-value=1.3e+02 Score=30.22 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=44.0
Q ss_pred CCCeEEEEeee-chHHHHHHh----hCCCEEEEEeCcH--HHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--
Q 007525 426 FKDVVCDVFAG-VGPICIPAA----KIVKRVYANDLNP--YAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS-- 494 (600)
Q Consensus 426 ~ge~VLDlfAG-vG~FaIpaA----kkg~~V~AvDiNP--~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~-- 494 (600)
.+.+++-.|+| .+.++..+| +.|++|+..+.+. +..+.+.+.+ + .++.++..|+.+. +..+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46788888874 455555544 4688999988763 4444443322 1 2366788887543 2222211
Q ss_pred hcCCcccEEEeCC
Q 007525 495 QKAHKITQVVMNL 507 (600)
Q Consensus 495 ~~~~~fD~VVmNp 507 (600)
...+.+|++|.|-
T Consensus 81 ~~~g~iD~li~nA 93 (256)
T PRK07889 81 EHVDGLDGVVHSI 93 (256)
T ss_pred HHcCCCcEEEEcc
Confidence 1135789888753
No 411
>PRK10904 DNA adenine methylase; Provisional
Probab=45.32 E-value=29 Score=36.18 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHhcCCCCCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHHHH
Q 007525 418 QRLLSGFNFKDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAVDY 463 (600)
Q Consensus 418 ~Riv~~l~~ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Ave~ 463 (600)
.+|+..+....+-++.|||.|.+.+.. ...+++.+|+|++.+..
T Consensus 19 ~~i~~~~P~~~~yvEPF~GggaV~l~~--~~~~~ilND~n~~Lin~ 62 (271)
T PRK10904 19 DDIKRHLPKGECLIEPFVGAGSVFLNT--DFSRYILADINSDLISL 62 (271)
T ss_pred HHHHHhCCCCCcEEeccCCcceeeEec--CCCeEEEEeCCHHHHHH
Confidence 566777776778999999999998854 33568889999988753
No 412
>PRK08643 acetoin reductase; Validated
Probab=45.06 E-value=2.2e+02 Score=28.09 Aligned_cols=77 Identities=16% Similarity=-0.045 Sum_probs=47.3
Q ss_pred CeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCc
Q 007525 428 DVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 499 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~ 499 (600)
.+++=.| |+|.++..++ ++|++|+.++.+++..+.+...+...+ .++.++.+|..+. +.++++. ...+.
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3445444 4455555444 458899999999988887777665443 2477888887543 2222211 01346
Q ss_pred ccEEEeCC
Q 007525 500 ITQVVMNL 507 (600)
Q Consensus 500 fD~VVmNp 507 (600)
+|.+|.+-
T Consensus 80 id~vi~~a 87 (256)
T PRK08643 80 LNVVVNNA 87 (256)
T ss_pred CCEEEECC
Confidence 89888764
No 413
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.42 E-value=1.9e+02 Score=28.80 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=45.4
Q ss_pred CCCeEEEEee----ech-HHHHHHhhCCCEEEEEeCc-----------HHHHHHHHHHHHHcCCCCcEEEEEcChHHH--
Q 007525 426 FKDVVCDVFA----GVG-PICIPAAKIVKRVYANDLN-----------PYAVDYLERNSVLNKLEKKIEVFNMDGRRF-- 487 (600)
Q Consensus 426 ~ge~VLDlfA----GvG-~FaIpaAkkg~~V~AvDiN-----------P~Ave~l~eNaklNgl~nrV~~i~gDare~-- 487 (600)
.|.+|+=.|+ |+| .++..++.+|++|+..+.+ ......+.+.++.++. ++.++..|..+.
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV--KVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHH
Confidence 4677888887 455 3444556678888877532 2223334455555443 478888887532
Q ss_pred HHHHHHh--hcCCcccEEEeCC
Q 007525 488 IDAMFAS--QKAHKITQVVMNL 507 (600)
Q Consensus 488 l~~l~~~--~~~~~fD~VVmNp 507 (600)
+..+... ...+..|++|.|.
T Consensus 83 i~~~~~~~~~~~g~id~li~~a 104 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNA 104 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECC
Confidence 2222211 0134579999775
No 414
>PRK07814 short chain dehydrogenase; Provisional
Probab=44.30 E-value=2.5e+02 Score=28.08 Aligned_cols=78 Identities=13% Similarity=0.000 Sum_probs=48.6
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.++|=.|+ .|.++..++ ++|++|+.++.+++..+.+.+.++..+ .++.++.+|..+. +..+++. ...
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567777764 555555544 568999999999988777766654433 3478888887543 2222211 012
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
+.+|.||.+
T Consensus 86 ~~id~vi~~ 94 (263)
T PRK07814 86 GRLDIVVNN 94 (263)
T ss_pred CCCCEEEEC
Confidence 468888865
No 415
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=44.25 E-value=19 Score=42.14 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=32.5
Q ss_pred cCCCCCeEEEEeeechHHHHHHhhC---CCEEEEEeCcHH
Q 007525 423 GFNFKDVVCDVFAGVGPICIPAAKI---VKRVYANDLNPY 459 (600)
Q Consensus 423 ~l~~ge~VLDlfAGvG~FaIpaAkk---g~~V~AvDiNP~ 459 (600)
++.++.+||||||-.|++.--|++. |..|+|+||-|-
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 4779999999999999999988875 568999999873
No 416
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=43.95 E-value=1.3e+02 Score=28.62 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=39.4
Q ss_pred eeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc
Q 007525 434 FAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 509 (600)
Q Consensus 434 fAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~ 509 (600)
+-|.|..+.++|+ .|..|++.|.+++..+.+.+. + + ....+..++..+ .|+|++-.|.
T Consensus 6 ~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g----~-~~~~s~~e~~~~---------~dvvi~~v~~ 67 (163)
T PF03446_consen 6 FIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G----A-EVADSPAEAAEQ---------ADVVILCVPD 67 (163)
T ss_dssp EE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T----E-EEESSHHHHHHH---------BSEEEE-SSS
T ss_pred EEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h----h-hhhhhhhhHhhc---------ccceEeeccc
Confidence 4577777777665 488999999999988877653 2 2 344666666542 5888888776
Q ss_pred c
Q 007525 510 D 510 (600)
Q Consensus 510 ~ 510 (600)
.
T Consensus 68 ~ 68 (163)
T PF03446_consen 68 D 68 (163)
T ss_dssp H
T ss_pred c
Confidence 3
No 417
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=43.76 E-value=2.3e+02 Score=27.97 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=48.2
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.++|=.| |.|.++..++ +.|+.|+..+.++.....+...++..+. ++.++.+|..+. +..+.+. ...
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 355666665 3445554444 4588999999999888777666654432 467788887543 2222111 113
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.||.+.
T Consensus 85 ~~id~vi~~a 94 (254)
T PRK08085 85 GPIDVLINNA 94 (254)
T ss_pred CCCCEEEECC
Confidence 4689888765
No 418
>PRK07774 short chain dehydrogenase; Provisional
Probab=43.74 E-value=2.3e+02 Score=27.73 Aligned_cols=78 Identities=18% Similarity=0.074 Sum_probs=46.4
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.+++=.| |.|.++..++ ++|.+|+.++-++...+.+...+...+ .++.++..|..+.- ..+.+. ....
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45666555 4555555555 468899999999887776665544322 23677788875432 221111 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+-
T Consensus 83 ~id~vi~~a 91 (250)
T PRK07774 83 GIDYLVNNA 91 (250)
T ss_pred CCCEEEECC
Confidence 589988743
No 419
>PRK08703 short chain dehydrogenase; Provisional
Probab=43.70 E-value=1.9e+02 Score=28.24 Aligned_cols=56 Identities=9% Similarity=-0.129 Sum_probs=36.5
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcCh
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG 484 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDa 484 (600)
+.+|+-.|| .|.++..++ ++|..|++++-+++..+.+...+...+-. .+.++..|.
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~ 65 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHP-EPFAIRFDL 65 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCC-CcceEEeee
Confidence 567777774 555555554 45889999999998887776666543322 244555554
No 420
>PRK05717 oxidoreductase; Validated
Probab=43.64 E-value=1.5e+02 Score=29.34 Aligned_cols=74 Identities=14% Similarity=0.005 Sum_probs=44.0
Q ss_pred CCCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH------HHHHHHhh
Q 007525 426 FKDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQ 495 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~------l~~l~~~~ 495 (600)
.|.+|+-.|+ .|.++..+ ++.|++|+.+|.++.....+.+.. .+++.++.+|+.+. +..+.+.
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~- 81 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEVLGQ- 81 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH-
Confidence 4667776664 34444444 446889999999876554433322 23478889987653 2222211
Q ss_pred cCCcccEEEeCC
Q 007525 496 KAHKITQVVMNL 507 (600)
Q Consensus 496 ~~~~fD~VVmNp 507 (600)
.+.+|.+|.+.
T Consensus 82 -~g~id~li~~a 92 (255)
T PRK05717 82 -FGRLDALVCNA 92 (255)
T ss_pred -hCCCCEEEECC
Confidence 24689888653
No 421
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=43.59 E-value=1.9e+02 Score=29.86 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCCeEEE--EeeechHHHHHHhhC-CCEEEEEeCcHHHHHHHHH
Q 007525 426 FKDVVCD--VFAGVGPICIPAAKI-VKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 426 ~ge~VLD--lfAGvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~e 466 (600)
.+.+++- ...++|.+++.+|+. |++|++++.+++-.+.+++
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3444442 334677777777775 7899999999988888765
No 422
>PRK05650 short chain dehydrogenase; Provisional
Probab=43.52 E-value=2.3e+02 Score=28.41 Aligned_cols=75 Identities=16% Similarity=-0.028 Sum_probs=45.4
Q ss_pred EEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCccc
Q 007525 430 VCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKIT 501 (600)
Q Consensus 430 VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~fD 501 (600)
|+-.| |+|.++..+ ++.|.+|++++.+++..+.+...++..+ +++.++.+|..+. +..+.+. .....+|
T Consensus 3 vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 3 VMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 44333 345555444 4568899999999988777766665543 2477888887543 1222210 0124689
Q ss_pred EEEeCC
Q 007525 502 QVVMNL 507 (600)
Q Consensus 502 ~VVmNp 507 (600)
++|.+-
T Consensus 80 ~lI~~a 85 (270)
T PRK05650 80 VIVNNA 85 (270)
T ss_pred EEEECC
Confidence 888763
No 423
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=43.50 E-value=2.2e+02 Score=27.74 Aligned_cols=78 Identities=18% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+..+|-.|+ +|.++..++ +.|.+|++++.+++....+...++..+ .++.++.+|+.+. +..+.+. ....
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 455666654 455555554 458899999999988887777665543 2478888887543 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
..|++|.+.
T Consensus 80 ~~d~vi~~a 88 (250)
T TIGR03206 80 PVDVLVNNA 88 (250)
T ss_pred CCCEEEECC
Confidence 579888765
No 424
>PRK05872 short chain dehydrogenase; Provisional
Probab=43.16 E-value=1.8e+02 Score=30.01 Aligned_cols=78 Identities=17% Similarity=0.035 Sum_probs=45.7
Q ss_pred CCCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.|.+||-.|+ +|.++.. ++++|++|+.++.+++.++.+.+.+.. ...+..+.+|..+. +..+.+. ...
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4667776664 3444444 445689999999999887776655421 22355666776543 1121111 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.+|.|.
T Consensus 84 g~id~vI~nA 93 (296)
T PRK05872 84 GGIDVVVANA 93 (296)
T ss_pred CCCCEEEECC
Confidence 5689988764
No 425
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=42.99 E-value=1.4e+02 Score=31.17 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=57.5
Q ss_pred CCCeEEEEee--ech-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCC-CcEEEEEcChHHH--HHHHHHh--hc-
Q 007525 426 FKDVVCDVFA--GVG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLE-KKIEVFNMDGRRF--IDAMFAS--QK- 496 (600)
Q Consensus 426 ~ge~VLDlfA--GvG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~-nrV~~i~gDare~--l~~l~~~--~~- 496 (600)
.|.+++--|+ |+| ..+..+|+.|++|+..+.+++.++....-....+.. .++..+.+|+.+. ...+... ..
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 4566666665 455 677888899999999999999998888887776663 4688899998533 2222111 12
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+++|.+|.|.
T Consensus 87 ~GkidiLvnna 97 (270)
T KOG0725|consen 87 FGKIDILVNNA 97 (270)
T ss_pred CCCCCEEEEcC
Confidence 46789888654
No 426
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=42.56 E-value=2.5e+02 Score=28.20 Aligned_cols=77 Identities=9% Similarity=-0.075 Sum_probs=46.6
Q ss_pred CCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++-.|+ .|.++..+ ++.|..|+.++.+++..+.+.+.++..+ .++.++.+|..+. +..+++. ...+
T Consensus 10 ~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 10 GKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 455665554 34444444 4468899999999988777766655433 2478888887543 2222211 0124
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
.+|.+|.+
T Consensus 87 ~id~li~~ 94 (278)
T PRK08277 87 PCDILING 94 (278)
T ss_pred CCCEEEEC
Confidence 68988876
No 427
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.48 E-value=90 Score=36.32 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=45.9
Q ss_pred eeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcccEEEeCC
Q 007525 434 FAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 434 fAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~fD~VVmNp 507 (600)
-||-|.++-.+++ .|..++++|.||+.++.+++ .| ..++.||+.+. +++. .-.+.|.+|.-.
T Consensus 405 I~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a----gi~~A~~vv~~~ 472 (601)
T PRK03659 405 IVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA----GAEKAEAIVITC 472 (601)
T ss_pred EecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc----CCccCCEEEEEe
Confidence 3788888887776 36799999999999998764 22 56899998753 3221 134678777765
Q ss_pred Ccc
Q 007525 508 PND 510 (600)
Q Consensus 508 P~~ 510 (600)
+..
T Consensus 473 ~d~ 475 (601)
T PRK03659 473 NEP 475 (601)
T ss_pred CCH
Confidence 553
No 428
>PLN02253 xanthoxin dehydrogenase
Probab=42.47 E-value=2.2e+02 Score=28.62 Aligned_cols=76 Identities=17% Similarity=0.005 Sum_probs=45.6
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++-.| |.|.++..++ +.|++|+.++.+++..+.+...+. -..++.++.+|..+. +..+.+. ...+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 56677666 3455555444 568999999999877765554442 123578888887653 2221110 0124
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
.+|.+|.+
T Consensus 94 ~id~li~~ 101 (280)
T PLN02253 94 TLDIMVNN 101 (280)
T ss_pred CCCEEEEC
Confidence 68988865
No 429
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=42.33 E-value=15 Score=36.54 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHHHhcCCCCCeEEEEeeechHHHHHHhhC--CCEEEEEeCcHHHHHHHHHHHHHcC
Q 007525 417 RQRLLSGFNFKDVVCDVFAGVGPICIPAAKI--VKRVYANDLNPYAVDYLERNSVLNK 472 (600)
Q Consensus 417 r~Riv~~l~~ge~VLDlfAGvG~FaIpaAkk--g~~V~AvDiNP~Ave~l~eNaklNg 472 (600)
|..+++..+.+.+-+|+||.+|+|.--+|+. ..+++|+|--.++-...+-|+.+|+
T Consensus 70 rhwivnhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnn 127 (286)
T PF05575_consen 70 RHWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNN 127 (286)
T ss_pred hHhhhhhccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCC
Confidence 4567777788889999999999998878875 3589999999999888888988886
No 430
>PRK07454 short chain dehydrogenase; Provisional
Probab=41.54 E-value=3.2e+02 Score=26.67 Aligned_cols=78 Identities=10% Similarity=-0.115 Sum_probs=48.1
Q ss_pred CCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.+++-.| |+|.++..+++ +|.+|++++.++...+.+.+.++.. ..++.++.+|+.+.- ..+.+. ...+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45566666 45666555554 5889999999998877766555432 235888899875431 111110 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
..|.+|.+.
T Consensus 83 ~id~lv~~a 91 (241)
T PRK07454 83 CPDVLINNA 91 (241)
T ss_pred CCCEEEECC
Confidence 589888754
No 431
>PLN02740 Alcohol dehydrogenase-like
Probab=40.45 E-value=45 Score=35.79 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=50.6
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcC-----hHHHHHHHHHhh
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD-----GRRFIDAMFASQ 495 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gD-----are~l~~l~~~~ 495 (600)
+.+|++|+=.+|| +|..++.+|+. |+ +|+++|.+++-.+.+++ -|.+. +++.+ ..+.+..+.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~~~~~~~v~~~~--- 265 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD---FINPKDSDKPVHERIREMT--- 265 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE---EEecccccchHHHHHHHHh---
Confidence 6788988887653 44455555654 76 79999999998887754 34432 33321 223333222
Q ss_pred cCCcccEEEeCCCcchHHHHHHHHHHhcC
Q 007525 496 KAHKITQVVMNLPNDATEFLDAFRGIYRD 524 (600)
Q Consensus 496 ~~~~fD~VVmNpP~~a~eFLdaa~~lLk~ 524 (600)
...+|+|+ |.-. ....+..+..++++
T Consensus 266 -~~g~dvvi-d~~G-~~~~~~~a~~~~~~ 291 (381)
T PLN02740 266 -GGGVDYSF-ECAG-NVEVLREAFLSTHD 291 (381)
T ss_pred -CCCCCEEE-ECCC-ChHHHHHHHHhhhc
Confidence 12588554 4332 23455666666655
No 432
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.89 E-value=2.3e+02 Score=28.46 Aligned_cols=79 Identities=10% Similarity=-0.075 Sum_probs=43.2
Q ss_pred CCCeEEEEeee----ch-HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFAG----VG-PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfAG----vG-~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.|.+++=.|++ +| .++..+++.|++|+..+.++..-+.+++-....+ . ..++.+|+.+. +..+.+. ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g--~-~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG--C-NFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC--C-ceEEEccCCCHHHHHHHHHHHHHH
Confidence 46678878874 44 3455667779999988887543333333322222 1 23567777543 2222211 11
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+.+|++|.|.
T Consensus 84 ~g~iDilVnna 94 (260)
T PRK06603 84 WGSFDFLLHGM 94 (260)
T ss_pred cCCccEEEEcc
Confidence 35689888764
No 433
>PRK06181 short chain dehydrogenase; Provisional
Probab=39.52 E-value=3.1e+02 Score=27.10 Aligned_cols=75 Identities=15% Similarity=0.003 Sum_probs=46.0
Q ss_pred eEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCCcc
Q 007525 429 VVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 500 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~~f 500 (600)
+||-.| |.|.++..++ +.|++|++++.++...+.+.+.+...+ .++.++.+|..+.- ..++.. .....+
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455444 4455555544 458899999999988877766665443 35788888875532 222211 012357
Q ss_pred cEEEeC
Q 007525 501 TQVVMN 506 (600)
Q Consensus 501 D~VVmN 506 (600)
|.||.+
T Consensus 80 d~vi~~ 85 (263)
T PRK06181 80 DILVNN 85 (263)
T ss_pred CEEEEC
Confidence 888866
No 434
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.49 E-value=28 Score=36.40 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=49.2
Q ss_pred CCCCeEEEEeeechHHHHHHhhC--------CC---EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHH
Q 007525 425 NFKDVVCDVFAGVGPICIPAAKI--------VK---RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAM 491 (600)
Q Consensus 425 ~~ge~VLDlfAGvG~FaIpaAkk--------g~---~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l 491 (600)
..-.+|+|+||-.|.++-.++++ +. +++|||+.|-| -+++ |..+++|.... +..+
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAI 107 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHH
Confidence 34468999999999999999874 12 39999999854 3555 77888886432 1111
Q ss_pred HHhhcCCcccEEEeCC
Q 007525 492 FASQKAHKITQVVMNL 507 (600)
Q Consensus 492 ~~~~~~~~fD~VVmNp 507 (600)
.+--.+++.|.||+|=
T Consensus 108 i~hfggekAdlVvcDG 123 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDG 123 (294)
T ss_pred HHHhCCCCccEEEeCC
Confidence 1111246899999974
No 435
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.42 E-value=1.9e+02 Score=29.48 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=46.0
Q ss_pred eEEEEeeechHHHHHHhh---CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh-hcCCcccE
Q 007525 429 VVCDVFAGVGPICIPAAK---IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS-QKAHKITQ 502 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpaAk---kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~-~~~~~fD~ 502 (600)
+++=.|+ |.++..+|+ .|++|++++.+++..+.+.+.++..+. ++.++.+|+.+. +..+.+. ...+.+|.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4444444 456666664 478999999998877766655544332 477888887543 2222211 01246898
Q ss_pred EEeCC
Q 007525 503 VVMNL 507 (600)
Q Consensus 503 VVmNp 507 (600)
+|.|-
T Consensus 80 li~nA 84 (275)
T PRK06940 80 LVHTA 84 (275)
T ss_pred EEECC
Confidence 88764
No 436
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=39.33 E-value=52 Score=35.12 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=32.5
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLER 466 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~e 466 (600)
+++|++|+=.+|| +|.+++.+|+. |+ +|+++|.+++-.+.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 6778888887663 45566666764 76 89999999998887754
No 437
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=38.92 E-value=57 Score=33.48 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=54.9
Q ss_pred CCCCCeEEEEeeechHHHHHHhhC-C--CEEEEEeCcHHHHHHHHHHHHH------cCCCCcEEEEEcChHHHHH-HHHH
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKI-V--KRVYANDLNPYAVDYLERNSVL------NKLEKKIEVFNMDGRRFID-AMFA 493 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkk-g--~~V~AvDiNP~Ave~l~eNakl------Ngl~nrV~~i~gDare~l~-~l~~ 493 (600)
+++|++|+|+.-|-|+|+--++.. | ..||+.=-++...-..++-.++ -...| ++.+-.+...+.. +-..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALGAPQKLD 124 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccCCCCccc
Confidence 789999999999999999888764 2 3788865443321111111111 11222 3333333222210 0000
Q ss_pred hhcCCcccEEEeC---CCcchHHHHHHHHHHhcCC
Q 007525 494 SQKAHKITQVVMN---LPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 494 ~~~~~~fD~VVmN---pP~~a~eFLdaa~~lLk~~ 525 (600)
--+..++||++.+ .|..+..+-.++.+.||++
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG 159 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG 159 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence 0012245555543 2556778888899999987
No 438
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.77 E-value=2.2e+02 Score=28.21 Aligned_cols=78 Identities=14% Similarity=0.009 Sum_probs=44.1
Q ss_pred CCCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+||=.|++. .++.. +++.|++|+.++.+ ...+.+.+.+...+ .++.++.+|+.+. +..+++. ...
T Consensus 14 ~~k~vlItGas~-gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNT-GLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 466777777643 44444 44568999999888 33444444433322 3478888887643 1222211 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|++|.+.
T Consensus 90 g~id~li~~a 99 (258)
T PRK06935 90 GKIDILVNNA 99 (258)
T ss_pred CCCCEEEECC
Confidence 4689888764
No 439
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=38.43 E-value=2.2e+02 Score=29.41 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=25.7
Q ss_pred EEEEeeec--hHHHHHHhhCCCEEEEEeCcHHHHHHHHH
Q 007525 430 VCDVFAGV--GPICIPAAKIVKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 430 VLDlfAGv--G~FaIpaAkkg~~V~AvDiNP~Ave~l~e 466 (600)
|.=+|+|. |.++..+++.|.+|+++|.+++..+.+..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 44455553 34555555668899999999998877654
No 440
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.18 E-value=2.6e+02 Score=27.82 Aligned_cols=77 Identities=12% Similarity=-0.005 Sum_probs=42.8
Q ss_pred CCCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.|.+++-.||+ |.++..+ ++.|++|++++.+.. +.+.+.++.. ..++.++.+|..+. +..+.+. ...
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGCN-TGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 46677766654 4455444 456889998877542 2233333322 23578888887543 2222211 113
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|++|.|.
T Consensus 82 g~iD~lv~~a 91 (251)
T PRK12481 82 GHIDILINNA 91 (251)
T ss_pred CCCCEEEECC
Confidence 5689888764
No 441
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=38.17 E-value=2.6e+02 Score=27.81 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=42.4
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.|.+++-.|+ .|.++..+| +.|++|++++.+.. +.+.+.+... ..++..+.+|..+. +..+++. ...
T Consensus 9 ~~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 9 EGKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL--GRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3566666665 455555554 46899999987642 2233333322 23477888887432 2222211 113
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+..|.+|.+.
T Consensus 84 ~~~D~li~~A 93 (253)
T PRK08993 84 GHIDILVNNA 93 (253)
T ss_pred CCCCEEEECC
Confidence 4689888754
No 442
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.81 E-value=2.7e+02 Score=27.62 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCeEEEEeee----ch-HHHHHHhhCCCEEEEEeCc------------HHHHHHHHHHHHHcCCCCcEEEEEcChHHHH-
Q 007525 427 KDVVCDVFAG----VG-PICIPAAKIVKRVYANDLN------------PYAVDYLERNSVLNKLEKKIEVFNMDGRRFI- 488 (600)
Q Consensus 427 ge~VLDlfAG----vG-~FaIpaAkkg~~V~AvDiN------------P~Ave~l~eNaklNgl~nrV~~i~gDare~l- 488 (600)
+.+|+=.|++ +| .++..++++|+.|++++.+ +.... +...+... ..++.++.+|..+.-
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESY--GVRCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhc--CCeEEEEECCCCCHHH
Confidence 5677777764 44 2344455668899999876 33333 33333332 235888899975532
Q ss_pred -HHHHHh--hcCCcccEEEeCC
Q 007525 489 -DAMFAS--QKAHKITQVVMNL 507 (600)
Q Consensus 489 -~~l~~~--~~~~~fD~VVmNp 507 (600)
..+++. ...+.+|+||.+.
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 111111 0124689888764
No 443
>PRK06138 short chain dehydrogenase; Provisional
Probab=37.79 E-value=3.2e+02 Score=26.69 Aligned_cols=77 Identities=16% Similarity=0.022 Sum_probs=46.9
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++=.|| .|.++..++ ++|++|++++-+++....+...+. . ..++.++.+|..+. +..+++. ....
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 455665555 455555444 468899999999887776666655 2 23488889987543 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+.
T Consensus 81 ~id~vi~~a 89 (252)
T PRK06138 81 RLDVLVNNA 89 (252)
T ss_pred CCCEEEECC
Confidence 689888654
No 444
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.43 E-value=2.2e+02 Score=29.59 Aligned_cols=79 Identities=18% Similarity=0.068 Sum_probs=45.8
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCc-HHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh-hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLN-PYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS-QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiN-P~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~-~~~~ 498 (600)
.|.+++=.|++.| .++..+++.|++|+.+|.+ +...+.+...++..+ .++.++.+|+.+. +..+.+. ...+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 4667776665433 3344555678999999985 344555544444433 2478888887543 2222211 0025
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
.+|.+|.|
T Consensus 89 ~iD~li~n 96 (306)
T PRK07792 89 GLDIVVNN 96 (306)
T ss_pred CCCEEEEC
Confidence 68988875
No 445
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=37.42 E-value=1.1e+02 Score=31.50 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=43.8
Q ss_pred CCCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCc
Q 007525 426 FKDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHK 499 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~ 499 (600)
.+.+||-.| |.|.++..+++ .|+.|+++..++.....+.......+...+++++.+|..+. +..++ ..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~ 77 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DG 77 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cC
Confidence 356666665 56666666554 58899888777654433322222223333588899998764 23333 24
Q ss_pred ccEEEeC
Q 007525 500 ITQVVMN 506 (600)
Q Consensus 500 fD~VVmN 506 (600)
+|+||.+
T Consensus 78 ~d~vih~ 84 (325)
T PLN02989 78 CETVFHT 84 (325)
T ss_pred CCEEEEe
Confidence 7877754
No 446
>PRK05855 short chain dehydrogenase; Validated
Probab=37.28 E-value=2.7e+02 Score=30.89 Aligned_cols=78 Identities=17% Similarity=-0.004 Sum_probs=49.3
Q ss_pred CCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~ 498 (600)
+.++|=.|+ +|.++..+ ++.|.+|+.++.|+...+.+...++..+. ++.++.+|+.+.- ..+.+. ...+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 456665554 55555544 45688999999999888877766655443 4888889886532 222211 1134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|-
T Consensus 392 ~id~lv~~A 400 (582)
T PRK05855 392 VPDIVVNNA 400 (582)
T ss_pred CCcEEEECC
Confidence 689888763
No 447
>PRK05875 short chain dehydrogenase; Provisional
Probab=37.06 E-value=3.7e+02 Score=26.88 Aligned_cols=80 Identities=11% Similarity=-0.110 Sum_probs=46.9
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++-.|+ .|.++..++ ++|.+|++++-+++..+.+...+..-+...++.++.+|..+. +..+++. ....
T Consensus 7 ~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 7 DRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 566776664 344555544 458899999999887766655544322123578888887543 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.+|.+-
T Consensus 86 ~~d~li~~a 94 (276)
T PRK05875 86 RLHGVVHCA 94 (276)
T ss_pred CCCEEEECC
Confidence 679888653
No 448
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=36.74 E-value=2.1e+02 Score=31.15 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=61.5
Q ss_pred CCCCCeEEEEeeechHHHHHHhhCC--CEEEEEeCcHHHHHHHHHHHH--HcCCCC-cEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAGVGPICIPAAKIV--KRVYANDLNPYAVDYLERNSV--LNKLEK-KIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAGvG~FaIpaAkkg--~~V~AvDiNP~Ave~l~eNak--lNgl~n-rV~~i~gDare~l~~l~~~~~~~ 498 (600)
+..-+.|+-+|-|-|++.-..++.. ..+.-+|++...++.-++=.. .++.++ +|.+.-||+..|++... .+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----~~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----EN 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----cC
Confidence 4456789999999999988888874 379999999988887766443 345543 69999999999997642 46
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
+||+||.|
T Consensus 195 ~~dVii~d 202 (337)
T KOG1562|consen 195 PFDVIITD 202 (337)
T ss_pred CceEEEEe
Confidence 89999975
No 449
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=36.15 E-value=50 Score=34.02 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=70.1
Q ss_pred CeEEEEeeechHHHHHHhhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeC
Q 007525 428 DVVCDVFAGVGPICIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 506 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpaAkkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmN 506 (600)
-++||+||=....++. ..+ -.|++||+|+.. -.+.+.|-.+.. ......++||+|++.
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~----------------~~I~qqDFm~rp---lp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH----------------PGILQQDFMERP---LPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCCC----------------CCceeeccccCC---CCCCcccceeEEEEE
Confidence 4899999876654443 223 369999999721 124455544431 111125689998764
Q ss_pred C-------CcchHHHHHHHHHHhcCCCCCCCCCccEE------EEEeccCCCCCchhHHHHHHHHHhhcccceEEEEeEE
Q 007525 507 L-------PNDATEFLDAFRGIYRDRPEDAKFTFPKI------HLYGFSKARDPEFDFHERIRIALVEVAVNVEMRRVRL 573 (600)
Q Consensus 507 p-------P~~a~eFLdaa~~lLk~~~~~g~~~~p~I------HvY~F~k~~d~~~di~eRI~~~L~~~~~~~~v~~VR~ 573 (600)
+ |..--+.+..+...|++... ..+|.+ .|+..++..+ .+++...+ ..+++..|+.
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~---~~~~~LFlVlP~~Cv~NSRy~~-----~~~l~~im----~~LGf~~~~~ 179 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGL---SLFPSLFLVLPLPCVTNSRYMT-----EERLREIM----ESLGFTRVKY 179 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCc---cCcceEEEEeCchHhhcccccC-----HHHHHHHH----HhCCcEEEEE
Confidence 3 22234788999999998621 112222 2333333332 23333333 3466777777
Q ss_pred ecCCCcEEEEEEEec
Q 007525 574 VAPGKWMLCASFVLP 588 (600)
Q Consensus 574 VAP~K~mycvsFrlp 588 (600)
..-.|.+|.+ |+..
T Consensus 180 ~~~~Kl~y~l-~r~~ 193 (219)
T PF11968_consen 180 KKSKKLAYWL-FRKS 193 (219)
T ss_pred EecCeEEEEE-Eeec
Confidence 6666666544 5553
No 450
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=35.97 E-value=2.4e+02 Score=28.11 Aligned_cols=76 Identities=17% Similarity=0.034 Sum_probs=44.2
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
++.+++=.|+ +|.++..++ +.|.+|+.++.+.+.++.+... + ..++.++.+|..+. +..+++. ...
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 4 KGEVVLVTGG-ASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---H--GDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---c--CCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 3566666665 344554444 4689999999998776665432 2 22477788887543 1111111 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+..|++|.|.
T Consensus 78 g~id~li~~A 87 (262)
T TIGR03325 78 GKIDCLIPNA 87 (262)
T ss_pred CCCCEEEECC
Confidence 4678888763
No 451
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=35.80 E-value=75 Score=37.17 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=41.4
Q ss_pred eechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcccEEEeCC
Q 007525 435 AGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 435 AGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~fD~VVmNp 507 (600)
||-|.++-..++ .|..++++|.|++.++.+++ .| ..++.||+.+. +++. .-.+.|.+|.--
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a----gi~~A~~vvv~~ 472 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA----GAAKAEVLINAI 472 (621)
T ss_pred EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhc----CCCcCCEEEEEe
Confidence 566667666664 36799999999999998865 22 56899998764 3221 134677766544
No 452
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.72 E-value=2.5e+02 Score=28.21 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=42.2
Q ss_pred CCCeEEEEee-echHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFA-GVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfA-GvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.+.+++=.|+ |.+.++.. +++.|++|+....+....+.+++-.+..+ ....+.+|+.+. +..+++. ..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---SELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---CceEEECCCCCHHHHHHHHHHHHHH
Confidence 4667888886 34444444 44578999887666443333333222222 234677887542 2222211 12
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+.+|++|.|.
T Consensus 82 ~g~iD~lVnnA 92 (261)
T PRK08690 82 WDGLDGLVHSI 92 (261)
T ss_pred hCCCcEEEECC
Confidence 35689888764
No 453
>PRK06196 oxidoreductase; Provisional
Probab=35.68 E-value=2.5e+02 Score=29.08 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=46.2
Q ss_pred CCCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+|+=.|| +|.++..+++ .|.+|++++.+++..+.+...+. .+.++.+|..+. +..+.+. ...
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 4567776665 4556655554 58899999999887765544432 267788887553 2222211 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|++|.|-
T Consensus 98 ~~iD~li~nA 107 (315)
T PRK06196 98 RRIDILINNA 107 (315)
T ss_pred CCCCEEEECC
Confidence 5689888764
No 454
>PRK06500 short chain dehydrogenase; Provisional
Probab=35.47 E-value=3.4e+02 Score=26.39 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=42.4
Q ss_pred CCeEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+|+=.|+ .|.++..+ +++|++|++++.+++.++.+.+.+ + .++.++.+|..+. +..+.+. ...+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 445555554 45555444 456889999999987665554332 2 2467777776432 1111110 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|.||.+.
T Consensus 80 ~id~vi~~a 88 (249)
T PRK06500 80 RLDAVFINA 88 (249)
T ss_pred CCCEEEECC
Confidence 689888764
No 455
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=35.33 E-value=69 Score=33.78 Aligned_cols=88 Identities=8% Similarity=-0.042 Sum_probs=50.0
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCEEEEEeC---cHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCC
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKRVYANDL---NPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAH 498 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~V~AvDi---NP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~ 498 (600)
..+|+.|+-.||| +|.+++.+|+. |++|++++. ++.-.+.+++ .|.+. +.....|..+ .. ...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~-v~~~~~~~~~-~~------~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGATY-VNSSKTPVAE-VK------LVG 237 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCEE-ecCCccchhh-hh------hcC
Confidence 3578888877664 46666767764 779999987 6777666543 34321 2111112111 11 123
Q ss_pred cccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 499 KITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 499 ~fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
.+|+|+- .-. +...+..+..+++++
T Consensus 238 ~~d~vid-~~g-~~~~~~~~~~~l~~~ 262 (355)
T cd08230 238 EFDLIIE-ATG-VPPLAFEALPALAPN 262 (355)
T ss_pred CCCEEEE-CcC-CHHHHHHHHHHccCC
Confidence 5785554 322 234667788888775
No 456
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=35.33 E-value=68 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=31.4
Q ss_pred hcCCCCCeEEEEeeec-hHHHHHHhh-CCCEEEEEeCcHHHHHHHHH
Q 007525 422 SGFNFKDVVCDVFAGV-GPICIPAAK-IVKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 422 ~~l~~ge~VLDlfAGv-G~FaIpaAk-kg~~V~AvDiNP~Ave~l~e 466 (600)
+....|++|+=+|+|. |.....+++ .|++|+.+|.+|.-.+.++.
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 3345799999888884 444444444 37899999999987666543
No 457
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=35.29 E-value=3.1e+02 Score=28.42 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=45.9
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+|+-.|+ +|.++..++ ++|++|+.++-+++..+.+...+... ..++.++.+|..+. +..+.+. ....
T Consensus 6 ~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 6 KGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 456665554 455555444 46889999999988776665555322 22478888887543 2222211 0124
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
.+|++|.|
T Consensus 83 ~iD~li~n 90 (322)
T PRK07453 83 PLDALVCN 90 (322)
T ss_pred CccEEEEC
Confidence 58988866
No 458
>PRK07806 short chain dehydrogenase; Provisional
Probab=35.12 E-value=3.8e+02 Score=26.19 Aligned_cols=78 Identities=10% Similarity=-0.008 Sum_probs=42.7
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHH-HHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPY-AVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~-Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
+.+++-.|+ +|.++..++ +.|.+|+++.-+.. ..+.+...++..+ .++.++.+|+.+. +..+.+. ...
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 567777665 344444443 46889999887653 3343433333322 2478888887553 1222211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|+||.+.
T Consensus 83 ~~~d~vi~~a 92 (248)
T PRK07806 83 GGLDALVLNA 92 (248)
T ss_pred CCCcEEEECC
Confidence 4589888765
No 459
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.09 E-value=2.5e+02 Score=30.01 Aligned_cols=79 Identities=14% Similarity=0.042 Sum_probs=55.7
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH------HHHHHHhhc
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQK 496 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~------l~~l~~~~~ 496 (600)
.|.+|+--||-+| ..|..+|++|++++-+--..+-++...+-++..+-.+++.++.+|+.+. +..+.. .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~--~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR--H 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH--h
Confidence 4778888887555 5677888899987777788888888866666665443699999998553 212221 3
Q ss_pred CCcccEEEeC
Q 007525 497 AHKITQVVMN 506 (600)
Q Consensus 497 ~~~fD~VVmN 506 (600)
-+..|+.|-|
T Consensus 89 fg~vDvLVNN 98 (282)
T KOG1205|consen 89 FGRVDVLVNN 98 (282)
T ss_pred cCCCCEEEec
Confidence 5678988866
No 460
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=34.71 E-value=4e+02 Score=27.83 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=52.1
Q ss_pred CCCCCeEEEEee-echHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFA-GVGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfA-GvG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.+|++|+=.++ ++|.+++.+|+. |+ .|++++.+++-.+.+++ .+.+.-+.....+..+.+..+. ....+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~~~~~ 242 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---GGGGV 242 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---CCCCC
Confidence 567877766654 355556666664 77 89999999998887754 2443211111223333333222 12348
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+-.-.. ...+..+.++++.+
T Consensus 243 d~vid~~g~--~~~~~~~~~~l~~~ 265 (351)
T cd08233 243 DVSFDCAGV--QATLDTAIDALRPR 265 (351)
T ss_pred CEEEECCCC--HHHHHHHHHhccCC
Confidence 977754321 23456666777654
No 461
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=34.64 E-value=2.7e+02 Score=23.25 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=47.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCC--Cc-chHHHHHHHHHHh
Q 007525 451 VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL--PN-DATEFLDAFRGIY 522 (600)
Q Consensus 451 V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNp--P~-~a~eFLdaa~~lL 522 (600)
|.-+|-++...+.++.-++..++. .-....+..+++..+. ...+|.|++|. |. .+.+++..+....
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~--~v~~~~~~~~~~~~~~----~~~~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE--EVTTASSGEEALELLK----KHPPDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE--EEEEESSHHHHHHHHH----HSTESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEECCHHHHHHHhc----ccCceEEEEEeeecccccccccccccccc
Confidence 566899999999999999977773 2336677888776553 24699999983 44 4567777765544
No 462
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=34.45 E-value=4.5e+02 Score=25.97 Aligned_cols=79 Identities=16% Similarity=-0.061 Sum_probs=48.2
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~ 497 (600)
.+.+|+-.|+ .|.++..++ +.|.+|+.++.+....+.+...++.-+ .++.++..|+.+.- .++.+. ...
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3667777774 455555444 458899999999888776655554322 24778888876432 222111 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|++|.+.
T Consensus 87 ~~~d~li~~a 96 (255)
T PRK06113 87 GKVDILVNNA 96 (255)
T ss_pred CCCCEEEECC
Confidence 4689888754
No 463
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=34.15 E-value=89 Score=30.47 Aligned_cols=41 Identities=22% Similarity=0.082 Sum_probs=29.3
Q ss_pred EEEEeeech--HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHH
Q 007525 430 VCDVFAGVG--PICIPAAKIVKRVYANDLNPYAVDYLERNSVL 470 (600)
Q Consensus 430 VLDlfAGvG--~FaIpaAkkg~~V~AvDiNP~Ave~l~eNakl 470 (600)
|.=+|||+= .++..+|..|..|+.+|.|+++++.+++.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 445666642 45556667799999999999999888887765
No 464
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=33.85 E-value=1.5e+02 Score=32.48 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=48.2
Q ss_pred eeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc
Q 007525 434 FAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 509 (600)
Q Consensus 434 fAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~ 509 (600)
.||.|.++..+++ .|..|+.+|.|++.++.++++ . .+.++.+|+.+.. .+... .-..+|.|++-.+.
T Consensus 5 IiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----~--~~~~~~gd~~~~~-~l~~~-~~~~a~~vi~~~~~ 75 (453)
T PRK09496 5 IVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----L--DVRTVVGNGSSPD-VLREA-GAEDADLLIAVTDS 75 (453)
T ss_pred EECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----c--CEEEEEeCCCCHH-HHHHc-CCCcCCEEEEecCC
Confidence 4677999988887 377999999999988877652 1 2678889986532 11111 13468888887766
Q ss_pred chH
Q 007525 510 DAT 512 (600)
Q Consensus 510 ~a~ 512 (600)
...
T Consensus 76 ~~~ 78 (453)
T PRK09496 76 DET 78 (453)
T ss_pred hHH
Confidence 443
No 465
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=33.83 E-value=3.7e+02 Score=26.57 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCeEEEEeeechHHHH----HHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICI----PAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaI----paAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++=.|+ .|.++. .++++|.+|+.++.++. ...+...+...+ .++.++.+|..+. +..+.+. ...+
T Consensus 8 ~k~vlVtGa-s~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 8 GKVVVVTGA-AQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 456666664 344443 44456889999999864 333334443333 2477788886543 2222211 0134
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|-
T Consensus 84 ~id~lv~nA 92 (260)
T PRK12823 84 RIDVLINNV 92 (260)
T ss_pred CCeEEEECC
Confidence 689888764
No 466
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=33.70 E-value=85 Score=35.91 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=46.5
Q ss_pred eeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCc
Q 007525 434 FAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 509 (600)
Q Consensus 434 fAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~ 509 (600)
=||.|.++..+|+ +|..|+.+|.|++.++.+++ . + +.++.||+.+.- .+++-.-+.+|.++..-+.
T Consensus 422 I~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g-~~~i~GD~~~~~--~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 422 LVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---G-IRAVLGNAANEE--IMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred EECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---C-CeEEEcCCCCHH--HHHhcCccccCEEEEEcCC
Confidence 4777888887776 36799999999999888763 1 2 678999987631 1111113468888776655
Q ss_pred ch
Q 007525 510 DA 511 (600)
Q Consensus 510 ~a 511 (600)
..
T Consensus 492 ~~ 493 (558)
T PRK10669 492 GY 493 (558)
T ss_pred hH
Confidence 43
No 467
>PRK07074 short chain dehydrogenase; Provisional
Probab=33.53 E-value=3.9e+02 Score=26.30 Aligned_cols=74 Identities=18% Similarity=0.084 Sum_probs=43.3
Q ss_pred eEEEEeeechHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCCcc
Q 007525 429 VVCDVFAGVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 500 (600)
Q Consensus 429 ~VLDlfAGvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~~f 500 (600)
+++=.|+ +|.++..+ +++|++|++++.++...+.+...+ ++ .+++++.+|+.+.- ..+++. .....+
T Consensus 4 ~ilItGa-t~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~--~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 4 TALVTGA-AGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL--GD--ARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred EEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cC--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4444444 34445444 456889999999988776665544 22 24788888875532 122211 012358
Q ss_pred cEEEeCC
Q 007525 501 TQVVMNL 507 (600)
Q Consensus 501 D~VVmNp 507 (600)
|.||.+.
T Consensus 79 d~vi~~a 85 (257)
T PRK07074 79 DVLVANA 85 (257)
T ss_pred CEEEECC
Confidence 9888764
No 468
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.45 E-value=3.2e+02 Score=27.85 Aligned_cols=79 Identities=15% Similarity=-0.031 Sum_probs=42.2
Q ss_pred CCCeEEEEeee-chHH----HHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFAG-VGPI----CIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfAG-vG~F----aIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.+.++|=.|++ .+.+ +..+++.|++|+.+.-+....+.+++-.+. +.. +.++.+|+.+. +..+.+. ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~--~~~-~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAE--LGA-FVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHh--cCC-ceEEecCCCCHHHHHHHHHHHHHh
Confidence 45678888864 2344 444555689998887654333333333222 222 45677887432 2222211 11
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+..|++|.|.
T Consensus 86 ~g~iD~lv~nA 96 (272)
T PRK08159 86 WGKLDFVVHAI 96 (272)
T ss_pred cCCCcEEEECC
Confidence 35689888763
No 469
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=33.38 E-value=4e+02 Score=26.50 Aligned_cols=81 Identities=9% Similarity=0.009 Sum_probs=45.2
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEe-CcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYAND-LNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvD-iNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+++=.|++.| .++..+++.|++|+.+. -+++..+.+...++.. ...++.++..|+.+. +..+++. ...
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK-YGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 3567776664433 34444556788888774 4666666555444321 122478888887653 2222211 113
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|++|.|-
T Consensus 86 g~id~lv~nA 95 (260)
T PRK08416 86 DRVDFFISNA 95 (260)
T ss_pred CCccEEEECc
Confidence 5689888764
No 470
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.26 E-value=2.6e+02 Score=30.14 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=47.6
Q ss_pred EEEEeeechH-HHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH------HHHHHHhhcCCcccE
Q 007525 430 VCDVFAGVGP-ICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQKAHKITQ 502 (600)
Q Consensus 430 VLDlfAGvG~-FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~------l~~l~~~~~~~~fD~ 502 (600)
|-..-+|+|. .+..+|.+|++|+-.--|.+..+.+.+-+....-..++.+++.|.-+. .....+ .....|+
T Consensus 40 VTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~--~~~~ldv 117 (314)
T KOG1208|consen 40 VTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK--KEGPLDV 117 (314)
T ss_pred EECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh--cCCCccE
Confidence 4444456664 455667789999999999877777777776644444688999997443 222221 2456777
Q ss_pred EEe
Q 007525 503 VVM 505 (600)
Q Consensus 503 VVm 505 (600)
.|.
T Consensus 118 LIn 120 (314)
T KOG1208|consen 118 LIN 120 (314)
T ss_pred EEe
Confidence 654
No 471
>PRK12829 short chain dehydrogenase; Provisional
Probab=33.14 E-value=2.4e+02 Score=27.71 Aligned_cols=77 Identities=16% Similarity=-0.004 Sum_probs=47.0
Q ss_pred CCCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~ 497 (600)
++.++|-.|+. |.++..+++ +|+.|++++.++...+.+..... +. ++.++.+|..+.- ..+++. ...
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA--KVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788877764 666665554 58899999999887665544332 22 3677888865432 122211 012
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
..+|.||.+.
T Consensus 85 ~~~d~vi~~a 94 (264)
T PRK12829 85 GGLDVLVNNA 94 (264)
T ss_pred CCCCEEEECC
Confidence 4689988654
No 472
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.87 E-value=2.2e+02 Score=28.91 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=48.9
Q ss_pred eeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcccEEEeCC
Q 007525 434 FAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMNL 507 (600)
Q Consensus 434 fAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~fD~VVmNp 507 (600)
-.|.|.|+..+|+ .|..|+++|.+++.++..... .+ .+..+++|+.+. +.++ .-..+|+++..-
T Consensus 5 IiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----~~--~~~~v~gd~t~~~~L~~a----gi~~aD~vva~t 74 (225)
T COG0569 5 IIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----EL--DTHVVIGDATDEDVLEEA----GIDDADAVVAAT 74 (225)
T ss_pred EECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----hc--ceEEEEecCCCHHHHHhc----CCCcCCEEEEee
Confidence 4678888888887 378999999999998763321 12 268888988653 3332 135689999877
Q ss_pred CcchHHH
Q 007525 508 PNDATEF 514 (600)
Q Consensus 508 P~~a~eF 514 (600)
.......
T Consensus 75 ~~d~~N~ 81 (225)
T COG0569 75 GNDEVNS 81 (225)
T ss_pred CCCHHHH
Confidence 6654443
No 473
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=32.76 E-value=2.5e+02 Score=27.73 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=40.2
Q ss_pred eechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCcccEEEeC
Q 007525 435 AGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKITQVVMN 506 (600)
Q Consensus 435 AGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~fD~VVmN 506 (600)
.|+|.++..++ +.|++|++++.++..++.+...+ + .++.++.+|+.+. +..+++. ...+.+|.||.+
T Consensus 7 Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 7 GATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G--DNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c--cceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 45566665555 45889999999988766554432 1 2477888887543 2222211 012458988864
No 474
>PRK06484 short chain dehydrogenase; Validated
Probab=32.59 E-value=2.7e+02 Score=30.95 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=46.0
Q ss_pred CCCeEEEEeeech---HHHHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 426 FKDVVCDVFAGVG---PICIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 426 ~ge~VLDlfAGvG---~FaIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
++.+++=.|++.| .++..+++.|++|+.++.+++.++.+...+ + .++.++..|..+. +..+++. ...+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL---G--PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4566776666544 333444556899999999988777655433 2 2366778876532 2222211 0135
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
.+|++|.|.
T Consensus 79 ~iD~li~na 87 (520)
T PRK06484 79 RIDVLVNNA 87 (520)
T ss_pred CCCEEEECC
Confidence 689988773
No 475
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=32.17 E-value=2.4e+02 Score=28.38 Aligned_cols=80 Identities=16% Similarity=-0.017 Sum_probs=40.5
Q ss_pred CCCeEEEEeee-chHHHHHHh----hCCCEEEEEeCcHHH--HHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--
Q 007525 426 FKDVVCDVFAG-VGPICIPAA----KIVKRVYANDLNPYA--VDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS-- 494 (600)
Q Consensus 426 ~ge~VLDlfAG-vG~FaIpaA----kkg~~V~AvDiNP~A--ve~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~-- 494 (600)
.|.+++=.||+ .+.++..+| +.|++|+....+.+. .+.....+... .. .+.++..|+.+. +..+.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP-LN-PSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc-cC-cceEeecCcCCHHHHHHHHHHHH
Confidence 46788888873 345554444 568888877544321 11111111111 12 356777887442 2222211
Q ss_pred hcCCcccEEEeCC
Q 007525 495 QKAHKITQVVMNL 507 (600)
Q Consensus 495 ~~~~~fD~VVmNp 507 (600)
...+.+|++|.|.
T Consensus 83 ~~~g~iD~lv~na 95 (258)
T PRK07370 83 QKWGKLDILVHCL 95 (258)
T ss_pred HHcCCCCEEEEcc
Confidence 1135789888664
No 476
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=32.02 E-value=3.7e+02 Score=26.54 Aligned_cols=74 Identities=19% Similarity=0.104 Sum_probs=44.2
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++=.| |+|.++..++ ++|.+|+.++.+++..+.+.... ..++.++.+|+.+. +..+++. ...+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45566555 5566666555 45889999999998776554432 22477888886432 2222211 0124
Q ss_pred cccEEEeC
Q 007525 499 KITQVVMN 506 (600)
Q Consensus 499 ~fD~VVmN 506 (600)
..|.+|.+
T Consensus 80 ~id~li~~ 87 (257)
T PRK07067 80 GIDILFNN 87 (257)
T ss_pred CCCEEEEC
Confidence 68888875
No 477
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=31.91 E-value=2e+02 Score=32.16 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=51.3
Q ss_pred CeEEEEeeechHHHHHH----hhCC-CEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcc
Q 007525 428 DVVCDVFAGVGPICIPA----AKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKI 500 (600)
Q Consensus 428 e~VLDlfAGvG~FaIpa----Akkg-~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~f 500 (600)
..||=+|| |..+-.+ |+.+ ..|+..|-+++....+..+... ++++...|+.+. +..+++ .+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~-----~~ 69 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIK-----DF 69 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHh-----cC
Confidence 35777777 4444444 4456 6999999999999887766433 478888887654 334442 35
Q ss_pred cEEEeC-CCcchHHHHHHHHH
Q 007525 501 TQVVMN-LPNDATEFLDAFRG 520 (600)
Q Consensus 501 D~VVmN-pP~~a~eFLdaa~~ 520 (600)
|.||-= ||.....+++++..
T Consensus 70 d~VIn~~p~~~~~~i~ka~i~ 90 (389)
T COG1748 70 DLVINAAPPFVDLTILKACIK 90 (389)
T ss_pred CEEEEeCCchhhHHHHHHHHH
Confidence 877654 44445555555443
No 478
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.89 E-value=4.3e+02 Score=27.55 Aligned_cols=40 Identities=18% Similarity=-0.050 Sum_probs=28.3
Q ss_pred eEEEEeeech--HHHHHHhhCCCEEEEEeCcHHHHHHHHHHH
Q 007525 429 VVCDVFAGVG--PICIPAAKIVKRVYANDLNPYAVDYLERNS 468 (600)
Q Consensus 429 ~VLDlfAGvG--~FaIpaAkkg~~V~AvDiNP~Ave~l~eNa 468 (600)
.|.=+|+|.= .++..+++.|..|+.+|.+++.++.+++.+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 4665666632 333444556789999999999999888754
No 479
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=31.88 E-value=5.1e+02 Score=28.41 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=23.6
Q ss_pred eechHHHHHHh----hCCCEEEEEeCcHHHHHHHHH
Q 007525 435 AGVGPICIPAA----KIVKRVYANDLNPYAVDYLER 466 (600)
Q Consensus 435 AGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~e 466 (600)
-|.|+.+.++| +.|..|+++|.+++.++.++.
T Consensus 6 IGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 6 IGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred ECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence 35565555555 457899999999999887654
No 480
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=31.83 E-value=5.5e+02 Score=26.65 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=51.0
Q ss_pred cCCCCCeEEEEeee-chHHHHHHhhC-CCE-EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVFAG-VGPICIPAAKI-VKR-VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlfAG-vG~FaIpaAkk-g~~-V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
...+|+.|+-.++| +|..++.+|+. |.+ |++++-+++..+.+++ .++..-+.....+..+.+..+. ....
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~---~~~~ 230 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT---DGEG 230 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc---CCCC
Confidence 35577777665553 56666667764 765 9999888877776654 2442111112233333333222 1345
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+|.|+-.-. ....+....+.++.+
T Consensus 231 ~d~vld~~g--~~~~~~~~~~~l~~~ 254 (340)
T TIGR00692 231 VDVFLEMSG--APKALEQGLQAVTPG 254 (340)
T ss_pred CCEEEECCC--CHHHHHHHHHhhcCC
Confidence 887665322 233456666666653
No 481
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=31.67 E-value=4.1e+02 Score=29.12 Aligned_cols=93 Identities=19% Similarity=0.087 Sum_probs=65.5
Q ss_pred cCCCCCeEEEEee--echHHHHHHhh-CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCc
Q 007525 423 GFNFKDVVCDVFA--GVGPICIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK 499 (600)
Q Consensus 423 ~l~~ge~VLDlfA--GvG~FaIpaAk-kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~ 499 (600)
..+.|++|+--.| ++|..+..+|| +||+|+++==+++-++++.+- -|++.-|.....|..+.+.+.+ +..
T Consensus 147 qpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~~L~~a~----P~G 219 (340)
T COG2130 147 QPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQALKEAC----PKG 219 (340)
T ss_pred CCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHHHHHHHC----CCC
Confidence 3678888765554 58999999999 589999999999999998864 3444324444445555554433 456
Q ss_pred ccEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 500 ITQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 500 fD~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
+|+.+=|- .-+.+|+.+..+...
T Consensus 220 IDvyfeNV---Gg~v~DAv~~~ln~~ 242 (340)
T COG2130 220 IDVYFENV---GGEVLDAVLPLLNLF 242 (340)
T ss_pred eEEEEEcC---CchHHHHHHHhhccc
Confidence 88777664 446788888888754
No 482
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=31.62 E-value=48 Score=31.33 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=30.9
Q ss_pred HHHHhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcccEEEeCCCcch
Q 007525 441 CIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 511 (600)
Q Consensus 441 aIpaAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD~VVmNpP~~a 511 (600)
|..+|+.|.+|..+|.++..-..... ... . .....++...+.-....||+||+|-|...
T Consensus 21 A~~la~~g~~vllvD~D~q~~~~~~~------~~~--~----~~~~~l~~~~~~~~~~~yD~VIiD~pp~~ 79 (169)
T cd02037 21 ALALAKLGYKVGLLDADIYGPSIPKM------WRG--P----MKMGAIKQFLTDVDWGELDYLVIDMPPGT 79 (169)
T ss_pred HHHHHHcCCcEEEEeCCCCCCCchHH------HhC--c----chHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 34444568899999999866321110 000 0 01122222221111257999999988753
No 483
>PRK07832 short chain dehydrogenase; Provisional
Probab=31.52 E-value=2.7e+02 Score=27.94 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=40.8
Q ss_pred echHHHHHH----hhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCcccEEEeCC
Q 007525 436 GVGPICIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKITQVVMNL 507 (600)
Q Consensus 436 GvG~FaIpa----Akkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~fD~VVmNp 507 (600)
|+|.++..+ ++.|+.|+.++.+++..+.+...+...+-. .+.++.+|..+. +..+.+. .....+|.+|.+.
T Consensus 8 as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 86 (272)
T PRK07832 8 AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIA 86 (272)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 345555544 456889999999998877766665543322 245566776432 1111111 0134689988765
No 484
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.40 E-value=2.3e+02 Score=31.26 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=54.6
Q ss_pred CCCCCeEEEEee-echHHHHHHhhC-CCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCccc
Q 007525 424 FNFKDVVCDVFA-GVGPICIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 501 (600)
Q Consensus 424 l~~ge~VLDlfA-GvG~FaIpaAkk-g~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~fD 501 (600)
+.+|++|.-.|+ |.|.+|+.+|+. |.+|+++|-+...-+.+-++ .|-+..+... .| .+.+..+.+. .+.-.|
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd~fv~~~-~d-~d~~~~~~~~-~dg~~~ 252 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGADVFVDST-ED-PDIMKAIMKT-TDGGID 252 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcceeEEec-CC-HHHHHHHHHh-hcCcce
Confidence 568998877775 599999999996 88999999997655544433 3444323222 12 2223332211 122233
Q ss_pred EEEeCCCcchHHHHHHHHHHhcCC
Q 007525 502 QVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 502 ~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
- +.|+ +..-++.+.+++|.+
T Consensus 253 ~-v~~~---a~~~~~~~~~~lk~~ 272 (360)
T KOG0023|consen 253 T-VSNL---AEHALEPLLGLLKVN 272 (360)
T ss_pred e-eeec---cccchHHHHHHhhcC
Confidence 2 2333 444567778888765
No 485
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=31.28 E-value=4.1e+02 Score=25.87 Aligned_cols=75 Identities=15% Similarity=0.018 Sum_probs=45.1
Q ss_pred EEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHH--HHHHHh--hcCCccc
Q 007525 430 VCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKIT 501 (600)
Q Consensus 430 VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l--~~l~~~--~~~~~fD 501 (600)
||=.| |+|.++..+++ +|.+|++++.++...+.+......++ .++.++.+|..+.- ..+++. ......|
T Consensus 4 vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 4 ALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 44444 45666666654 58899999999887776665554443 24888888876531 111111 0124578
Q ss_pred EEEeCC
Q 007525 502 QVVMNL 507 (600)
Q Consensus 502 ~VVmNp 507 (600)
.||.+.
T Consensus 81 ~vi~~a 86 (255)
T TIGR01963 81 ILVNNA 86 (255)
T ss_pred EEEECC
Confidence 888653
No 486
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=31.28 E-value=1.7e+02 Score=29.91 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=42.4
Q ss_pred CCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHhhcCCcc
Q 007525 427 KDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKI 500 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~~~~~~f 500 (600)
+.+||=.| |+|.++-.+++ +|.+|++++.++.....+.......+...+++++.+|..+. +..++ ..+
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 77 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVV-----DGC 77 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHH-----cCC
Confidence 45566555 46777766665 47899988877653322222222222233588999998653 23333 247
Q ss_pred cEEEeC
Q 007525 501 TQVVMN 506 (600)
Q Consensus 501 D~VVmN 506 (600)
|.||..
T Consensus 78 d~Vih~ 83 (322)
T PLN02662 78 EGVFHT 83 (322)
T ss_pred CEEEEe
Confidence 877754
No 487
>PRK06701 short chain dehydrogenase; Provisional
Probab=31.20 E-value=3.9e+02 Score=27.51 Aligned_cols=78 Identities=12% Similarity=-0.076 Sum_probs=43.6
Q ss_pred CCCeEEEEeeechHHH----HHHhhCCCEEEEEeCcHH-HHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFAGVGPIC----IPAAKIVKRVYANDLNPY-AVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfAGvG~Fa----IpaAkkg~~V~AvDiNP~-Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.+.++|-.|+ +|.++ ..+++.|++|+.++.++. ..+.+...++..+ .++.++.+|+.+. +..++++ ..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567777775 33334 445557899999988753 3343433333333 2477888887542 2222211 01
Q ss_pred CCcccEEEeC
Q 007525 497 AHKITQVVMN 506 (600)
Q Consensus 497 ~~~fD~VVmN 506 (600)
...+|.||.+
T Consensus 122 ~~~iD~lI~~ 131 (290)
T PRK06701 122 LGRLDILVNN 131 (290)
T ss_pred cCCCCEEEEC
Confidence 2468988865
No 488
>PRK07201 short chain dehydrogenase; Provisional
Probab=31.15 E-value=3.5e+02 Score=31.00 Aligned_cols=78 Identities=18% Similarity=0.063 Sum_probs=48.8
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++-.|+ +|.++..++ +.|++|++++-+++..+.+...+...+ .++.++.+|+.+. +..+.+. ...+
T Consensus 371 ~k~vlItGa-s~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 371 GKVVLITGA-SSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 556665554 555555555 468899999999988877766654433 2478888887543 2222211 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
..|++|.|-
T Consensus 448 ~id~li~~A 456 (657)
T PRK07201 448 HVDYLVNNA 456 (657)
T ss_pred CCCEEEECC
Confidence 689888764
No 489
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=31.14 E-value=3.6e+02 Score=31.91 Aligned_cols=81 Identities=21% Similarity=0.061 Sum_probs=48.6
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.+.+||=.|+ .|.++..+| ++|++|++++.+++..+.+...+....-.+.+.++.+|+.+. +..+++. ...
T Consensus 413 ~gkvvLVTGa-sggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVTGG-AGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3566776654 455555544 468999999999988877665554321122477888887542 2222211 013
Q ss_pred CcccEEEeCC
Q 007525 498 HKITQVVMNL 507 (600)
Q Consensus 498 ~~fD~VVmNp 507 (600)
+.+|.+|.|-
T Consensus 492 g~iDilV~nA 501 (676)
T TIGR02632 492 GGVDIVVNNA 501 (676)
T ss_pred CCCcEEEECC
Confidence 4689888764
No 490
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.12 E-value=87 Score=34.31 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-C-CEEEEEeCcHHHHHHHHH
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-V-KRVYANDLNPYAVDYLER 466 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g-~~V~AvDiNP~Ave~l~e 466 (600)
+.+|++|.-.|.| +|...+.-|+. | .+++|+|+|++-.+.+++
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 7899998887765 44444444443 5 499999999999998765
No 491
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=31.01 E-value=5.9e+02 Score=26.84 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=51.1
Q ss_pred CCCCCeEEEEeee-chHHHHHHhhC-CCE-EEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHHHHHHHHhhcCCcc
Q 007525 424 FNFKDVVCDVFAG-VGPICIPAAKI-VKR-VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 424 l~~ge~VLDlfAG-vG~FaIpaAkk-g~~-V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~l~~l~~~~~~~~f 500 (600)
+.++++|+=.++| +|..++.+|+. |.. |++++-+++..+.+++ .++. .++..+-..+...+.+......+
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~~ 257 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRGV 257 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCCC
Confidence 4677777755443 55666666664 665 9999999888877643 2442 23332222222222111123468
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+---+. ...+..+.++++..
T Consensus 258 d~vld~vg~--~~~~~~~~~~l~~~ 280 (367)
T cd08263 258 DVVVEALGK--PETFKLALDVVRDG 280 (367)
T ss_pred CEEEEeCCC--HHHHHHHHHHHhcC
Confidence 988743322 12556667777654
No 492
>PRK05993 short chain dehydrogenase; Provisional
Probab=30.98 E-value=2.7e+02 Score=28.17 Aligned_cols=71 Identities=23% Similarity=0.146 Sum_probs=43.1
Q ss_pred CCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh---hcC
Q 007525 427 KDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS---QKA 497 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~---~~~ 497 (600)
+.+|+-.|| +|.++..+| ++|.+|++++-+++.++.+.. . .++++.+|..+. +..+.+. ...
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~----~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E----GLEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C----CceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456776664 455555554 468899999999987765542 2 256777887543 2222211 112
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
+.+|.+|.|
T Consensus 75 g~id~li~~ 83 (277)
T PRK05993 75 GRLDALFNN 83 (277)
T ss_pred CCccEEEEC
Confidence 468988876
No 493
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=30.89 E-value=1.1e+02 Score=33.61 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=13.5
Q ss_pred HHHhhCCCEEEEEeC-cHHH
Q 007525 442 IPAAKIVKRVYANDL-NPYA 460 (600)
Q Consensus 442 IpaAkkg~~V~AvDi-NP~A 460 (600)
..+|++|.+|..+|+ +|.+
T Consensus 129 ~~LA~~G~rVLlID~~DpQ~ 148 (388)
T PRK13705 129 QDLALKGLRVLLVEGNDPQG 148 (388)
T ss_pred HHHHhcCCCeEEEcCCCCCC
Confidence 345567889999995 7643
No 494
>PRK06484 short chain dehydrogenase; Validated
Probab=30.89 E-value=3.4e+02 Score=30.18 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=45.6
Q ss_pred CCCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
.|.++|=.|++ |.++.. +++.|++|+.++.+++.++.+.+.. + .++..+.+|+.+. +..+++. ...
T Consensus 268 ~~k~~lItGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 268 SPRVVAITGGA-RGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G--DEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 56677766654 444544 4456899999999998887766432 2 2356677776442 2222211 013
Q ss_pred CcccEEEeC
Q 007525 498 HKITQVVMN 506 (600)
Q Consensus 498 ~~fD~VVmN 506 (600)
+.+|.+|.|
T Consensus 342 g~id~li~n 350 (520)
T PRK06484 342 GRLDVLVNN 350 (520)
T ss_pred CCCCEEEEC
Confidence 568988875
No 495
>PRK07825 short chain dehydrogenase; Provisional
Probab=30.35 E-value=3.8e+02 Score=26.82 Aligned_cols=74 Identities=18% Similarity=0.034 Sum_probs=43.6
Q ss_pred CCeEEEEeeechHHHHH----HhhCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCC
Q 007525 427 KDVVCDVFAGVGPICIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 498 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIp----aAkkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~ 498 (600)
+.+++=.|| +|.++.. ++++|+.|+.++.+++..+.+...+. ++.++.+|..+. +..+.+. ...+
T Consensus 5 ~~~ilVtGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 5 GKVVAITGG-ARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456776665 3445544 44568899999999988766544432 367778886542 1111110 0124
Q ss_pred cccEEEeCC
Q 007525 499 KITQVVMNL 507 (600)
Q Consensus 499 ~fD~VVmNp 507 (600)
..|.+|.|.
T Consensus 78 ~id~li~~a 86 (273)
T PRK07825 78 PIDVLVNNA 86 (273)
T ss_pred CCCEEEECC
Confidence 678888763
No 496
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=30.33 E-value=3.2e+02 Score=24.81 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=43.9
Q ss_pred eeechHHHHHHh----hCCC-EEEEEeCc--HHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcCCcccE
Q 007525 434 FAGVGPICIPAA----KIVK-RVYANDLN--PYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKITQ 502 (600)
Q Consensus 434 fAGvG~FaIpaA----kkg~-~V~AvDiN--P~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~~~fD~ 502 (600)
..|.|+++..+| ++|. .|+.+.-+ ....+.+...++..+ . ++.++.+|..+. ++.+.+. .....+|+
T Consensus 6 tGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~ 83 (167)
T PF00106_consen 6 TGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A-KITFIECDLSDPESIRALIEEVIKRFGPLDI 83 (167)
T ss_dssp ETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S-EEEEEESETTSHHHHHHHHHHHHHHHSSESE
T ss_pred ECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c-ccccccccccccccccccccccccccccccc
Confidence 334455555555 4554 88999988 677777777777666 3 599999986432 2221111 12356888
Q ss_pred EEeCC
Q 007525 503 VVMNL 507 (600)
Q Consensus 503 VVmNp 507 (600)
+|.+.
T Consensus 84 li~~a 88 (167)
T PF00106_consen 84 LINNA 88 (167)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 88654
No 497
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.29 E-value=1.6e+02 Score=28.54 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCCeEEEEeeechHHHHHHh----hCCCEEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hcC
Q 007525 426 FKDVVCDVFAGVGPICIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKA 497 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaA----kkg~~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~~ 497 (600)
++++|+-.|++ |.++..++ +.|++|++.+-+++....+...+...+ ++.++.+|..+. +..+.+. ...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35677777763 55555554 358899999999988776655544332 378888887542 2222111 012
Q ss_pred CcccEEEeCCC
Q 007525 498 HKITQVVMNLP 508 (600)
Q Consensus 498 ~~fD~VVmNpP 508 (600)
..+|.++.+..
T Consensus 80 ~~id~ii~~ag 90 (238)
T PRK05786 80 NAIDGLVVTVG 90 (238)
T ss_pred CCCCEEEEcCC
Confidence 35788887654
No 498
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=30.27 E-value=77 Score=32.31 Aligned_cols=89 Identities=17% Similarity=0.003 Sum_probs=49.2
Q ss_pred CCCCeEEEEeee-chHHHHHHhhC-CC-EEEEEeCcHHHHHHHHHHHHHcCCCCcEEEEEc-ChHHHHHHHHHhhcCCcc
Q 007525 425 NFKDVVCDVFAG-VGPICIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHKI 500 (600)
Q Consensus 425 ~~ge~VLDlfAG-vG~FaIpaAkk-g~-~V~AvDiNP~Ave~l~eNaklNgl~nrV~~i~g-Dare~l~~l~~~~~~~~f 500 (600)
.+|++|+=.++| +|..++.+|+. |+ .|+++|.+++-.+.+++ .+.+. ++.. +..+.+..+. ....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~~~~~~~~---~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATA---LAEPEVLAERQGGLQ---NGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcE---ecCchhhHHHHHHHh---CCCCC
Confidence 478888877653 44455555553 66 49999999988777655 34431 2221 1112222221 12358
Q ss_pred cEEEeCCCcchHHHHHHHHHHhcCC
Q 007525 501 TQVVMNLPNDATEFLDAFRGIYRDR 525 (600)
Q Consensus 501 D~VVmNpP~~a~eFLdaa~~lLk~~ 525 (600)
|+|+ |--. ....++.+..+++++
T Consensus 189 d~vi-d~~G-~~~~~~~~~~~l~~~ 211 (280)
T TIGR03366 189 DVAL-EFSG-ATAAVRACLESLDVG 211 (280)
T ss_pred CEEE-ECCC-ChHHHHHHHHHhcCC
Confidence 8665 4322 233456777788765
No 499
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=30.25 E-value=92 Score=34.08 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCeEEEEeeechHHHHHHhhCCCEEEEEeCcHHHH
Q 007525 427 KDVVCDVFAGVGPICIPAAKIVKRVYANDLNPYAV 461 (600)
Q Consensus 427 ge~VLDlfAGvG~FaIpaAkkg~~V~AvDiNP~Av 461 (600)
.-.||-.|||.|.++.-+|..|..+-++|.+--|+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Ml 185 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFML 185 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHH
Confidence 56799999999999999999998888887766554
No 500
>PRK06114 short chain dehydrogenase; Provisional
Probab=30.05 E-value=5e+02 Score=25.69 Aligned_cols=79 Identities=14% Similarity=-0.071 Sum_probs=45.1
Q ss_pred CCCeEEEEeeechHHHHHHhh----CCCEEEEEeCcHH-HHHHHHHHHHHcCCCCcEEEEEcChHHH--HHHHHHh--hc
Q 007525 426 FKDVVCDVFAGVGPICIPAAK----IVKRVYANDLNPY-AVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 496 (600)
Q Consensus 426 ~ge~VLDlfAGvG~FaIpaAk----kg~~V~AvDiNP~-Ave~l~eNaklNgl~nrV~~i~gDare~--l~~l~~~--~~ 496 (600)
.+.+++-.| |.|.++..+|+ .|++|+.++.+.. .++.+.+.+...+ .++.++.+|..+. +..+.+. ..
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 355666555 45556665554 5889999998753 3454544444332 3477888887442 2221111 11
Q ss_pred CCcccEEEeCC
Q 007525 497 AHKITQVVMNL 507 (600)
Q Consensus 497 ~~~fD~VVmNp 507 (600)
.+..|.+|.|.
T Consensus 84 ~g~id~li~~a 94 (254)
T PRK06114 84 LGALTLAVNAA 94 (254)
T ss_pred cCCCCEEEECC
Confidence 35689888765
Done!