BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007526
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 173/374 (46%), Gaps = 8/374 (2%)
Query: 150 SKQTLNEFAKELRA---FSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAA 205
+++ + LRA + + + GD G+ + + L +++S +T A
Sbjct: 37 TEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEA 96
Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAK 264
G L+S L+ L+LS NP+GD G++ LC+ L+D +E+LQL L +
Sbjct: 97 GCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCE 156
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXX 323
+A +L+ L+ L ++NN I +G L + L +++ + +L
Sbjct: 157 PLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLC 216
Query: 324 XXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
SLREL L N +GD GI L GL S +L L + I+A G + +
Sbjct: 217 GIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVL 276
Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDN 442
+ ++L ++L N +GDEGA + ++L Q + ++ + ++ + ++ +L N
Sbjct: 277 QAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQN 336
Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTI 501
+ L L+ N +G G + L + L G + L LG C++ SG +A +L N ++
Sbjct: 337 KHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSL 396
Query: 502 SILDLRANGLRDEG 515
LDL N + D G
Sbjct: 397 RELDLSNNCVGDPG 410
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 176/404 (43%), Gaps = 7/404 (1%)
Query: 184 ESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK-CLCDIL 242
E L Q E V G+T K L++N +L L L N +GD GV L +
Sbjct: 18 ELLPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQ 77
Query: 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302
+++L L + L + G + L++ LR L L++N + +G L E LL+
Sbjct: 78 SPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQ 137
Query: 303 T-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
+ L ++L+EL + N IG+ G R L GL+ +L
Sbjct: 138 CHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQL 197
Query: 362 AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG-AEKIADALKQNRTITTI 420
L + N ++ + + + SL ++L N +GD G AE L + T+
Sbjct: 198 ETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTL 257
Query: 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLG 479
L +I + G + RVL+ + L LA N +G +GA+ L E L G + +L +
Sbjct: 258 WLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVK 317
Query: 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539
C + A+ + V+ ML N + L L +N L D G + L Q+ L + L E
Sbjct: 318 SCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCE 377
Query: 540 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSF 583
+ + G ++A L AN ++ L+L+NN + G V+ L S
Sbjct: 378 VTNSGCSSLASLLLANR--SLRELDLSNNCVGDPG-VLQLLGSL 418
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 149/320 (46%), Gaps = 10/320 (3%)
Query: 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSN 217
+ L + +S GD GL L E L Q E++ +TAA + VL++
Sbjct: 106 RSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRAT 165
Query: 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAG-VERLQLSSVDLRDEGAKAIAELLKNNSIL 276
ALK L +S N IG+ G + L L D+A +E L+L + L K + ++ + + L
Sbjct: 166 RALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASL 225
Query: 277 RVLELNNNMIDYSGFTSLAEALLEN-STIRSLHXXXXXXXXXXXXXXXXXXXXXKSLREL 335
R L+L +N + +G L LL S +++L ++L+EL
Sbjct: 226 RELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKEL 285
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
L GN +GDEG R L L +L L + + S++A HV+ + K LL + L
Sbjct: 286 SLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLS 345
Query: 396 MNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
N +GD G +++ AL Q T+ + LG + + G S++A +L N + LDL+ N
Sbjct: 346 SNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDLSNNC 405
Query: 455 IGADGAKALSEVLKFHGNIN 474
+G G VL+ G++
Sbjct: 406 VGDPG------VLQLLGSLE 419
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 3/272 (1%)
Query: 145 KLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGIT 203
+L S + L + RA + +S + G+ G L + L + E + G+T
Sbjct: 149 RLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLT 208
Query: 204 AAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAG-VERLQLSSVDLRDEG 262
A K G++ S +L+ L+L N +GD G+ LC L+ A ++ L L D+ G
Sbjct: 209 PANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASG 268
Query: 263 AKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXX 321
+ + +L+ L+ L L N + G L E+LL+ + SL
Sbjct: 269 CRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQH 328
Query: 322 XXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381
K L EL L N +GD GI+ L LS L VL +G+ ++ G +A
Sbjct: 329 VSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLAS 388
Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
+ +SL ++L N +GD G ++ +L+Q
Sbjct: 389 LLLANRSLRELDLSNNCVGDPGVLQLLGSLEQ 420
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 174/368 (47%), Gaps = 7/368 (1%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
A + + + GD G+ + + L N T +++S G+T AG G+L+S L
Sbjct: 53 ALTELSLRTNELGDGGVGLVLQGL-QNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTL 111
Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ L+L+ NP+GD G+K LC+ L D +E+LQL +L + +A +L+ + + L
Sbjct: 112 RELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKEL 171
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
L+NN + G L + L +++ + SL SL+EL L
Sbjct: 172 VLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLS 231
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N +G+ GI AL GL KL L + I+A+G + ++ +SL ++L N+
Sbjct: 232 SNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNE 291
Query: 399 IGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ DEGA + ++ L+ + ++ + ++ + VL + + L ++ NP+G
Sbjct: 292 LKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGD 351
Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
+G + L + L + L LG C + SG +A++L N ++ LDL N + G
Sbjct: 352 EGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGV 411
Query: 517 KCLAQSFK 524
L +S K
Sbjct: 412 LQLLESLK 419
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 4/314 (1%)
Query: 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSN 217
+ L + ++ GD GL L E L Q E++ +TA + VL+
Sbjct: 106 RSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVK 165
Query: 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAG-VERLQLSSVDLRDEGAKAIAELLKNNSIL 276
K L LS N + + GV+ LC L D+A +E L+L + + K + +++ + + L
Sbjct: 166 ADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASL 225
Query: 277 RVLELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLREL 335
+ L+L++N + +G +L LL S +R+L +SL+EL
Sbjct: 226 QELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKEL 285
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
L N + DEG R L L +L L I S++A + + +SLL + +
Sbjct: 286 SLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMS 345
Query: 396 MNDIGDEGAEKIADALKQNRTI-TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
N +GDEG +++ AL Q T+ + LG ++ + G S++A VL N + LDL+ N
Sbjct: 346 SNPLGDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNC 405
Query: 455 IGADGAKALSEVLK 468
+G G L E LK
Sbjct: 406 MGGPGVLQLLESLK 419
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 183/422 (43%), Gaps = 10/422 (2%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225
S+D+ D E L Q E V G+T K +Q+N AL L+L
Sbjct: 3 SLDIQCEQLSD---ARWTELLPLIQQYEVVRLDDCGLTEVRCKDISSAVQANPALTELSL 59
Query: 226 SGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284
N +GD GV + L + +++L L + L + G + +L++ S LR L LN+N
Sbjct: 60 RTNELGDGGVGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTLRELHLNDN 119
Query: 285 MIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIG 343
+ +G L E L + + L +EL L N +
Sbjct: 120 PMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLH 179
Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
+ G+R L GL +L L + N I+A + + + + SL ++L N +G+ G
Sbjct: 180 EPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAG 239
Query: 404 AEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
+ L + + T+ L +I ++G + RVL+ + L LA N + +GA+
Sbjct: 240 IAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARL 299
Query: 463 LSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
L E L G + +L + C + A+ + +L + ++ L + +N L DEG + L +
Sbjct: 300 LCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCK 359
Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFF 581
+ + L + L ++ + G ++A L AN ++ L+L+NN + G V+ L
Sbjct: 360 ALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANR--SLRELDLSNNCMGGPG-VLQLLE 416
Query: 582 SF 583
S
Sbjct: 417 SL 418
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 3/253 (1%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALKT 222
F + +S + + G+ L + L + E + GITAA K V+ S +L+
Sbjct: 168 FKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQE 227
Query: 223 LNLSGNPIGDEGVKCLCD-ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLEL 281
L+LS N +G+ G+ LC +L+ + + L L D+ EG K + +L+ L+ L L
Sbjct: 228 LDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSL 287
Query: 282 NNNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGN 340
+N + G L E+LLE + SL +SL EL + N
Sbjct: 288 ASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSN 347
Query: 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400
+GDEG++ L LS L L +G+ ++ G +A + +SL ++L N +G
Sbjct: 348 PLGDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMG 407
Query: 401 DEGAEKIADALKQ 413
G ++ ++LKQ
Sbjct: 408 GPGVLQLLESLKQ 420
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 9/415 (2%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
S+D+ D AE L Q + V G+T A K L+ N AL L
Sbjct: 5 IQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 224 NLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
NL N +GD GV C+ L + +++L L + L G ++ L+ L+ L L+
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNS 341
+N++ +G L E LL+ + L +EL + N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
I + G+R L GL +L L + + +++ + + + SL + L N +GD
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
G AE L + + T+ + I +KG + RVL+ + L LA N +G +GA
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
+ L E L G + +L + C A+ + +L N + L + N L D G + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
Q L + LA ++ D ++A L AN ++ L+L+NN L G
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 176/389 (45%), Gaps = 8/389 (2%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALK 221
A + +++ GD G+ + + L +++S +T AG L++ L+
Sbjct: 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 222 TLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLE 280
L+LS N +GD G++ LC+ L+D +E+LQL L + +A +L+ + L
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 281 LNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHG 339
++NN I+ +G L + L ++ + +L SLREL L
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
N +GD G+ L GL +L L I I+AKG + ++ +SL ++L N++
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
Query: 400 GDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
GDEGA + + L+ + ++ + + + S + VL N + L ++ N +
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356
Query: 459 GAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 517
G + L + L G++ L L C + S +A L N+++ LDL N L D G
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416
Query: 518 CLAQSFK---VVNEALTSIDLAFNEIRDD 543
L +S + + E L D+ ++E +D
Sbjct: 417 QLVESVRQPGCLLEQLVLYDIYWSEEMED 445
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 9/415 (2%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
S+D+ D AE L Q + V G+T A K L+ N AL L
Sbjct: 4 IQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 224 NLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
NL N +GD GV C+ L + +++L L + L G ++ L+ L+ L L+
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNS 341
+N++ +G L E LL+ + L +EL + N
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
I + G+R L GL +L L + + +++ + + + SL + L N +GD
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
G AE L + + T+ + I +KG + RVL+ + L LA N +G +GA
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
+ L E L G + +L + C A+ + +L N + L + N L D G + L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
Q L + LA ++ D ++A L AN ++ L+L+NN L G
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 413
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 176/389 (45%), Gaps = 8/389 (2%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALK 221
A + +++ GD G+ + + L +++S +T AG L++ L+
Sbjct: 56 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 115
Query: 222 TLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLE 280
L+LS N +GD G++ LC+ L+D +E+LQL L + +A +L+ + L
Sbjct: 116 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 175
Query: 281 LNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHG 339
++NN I+ +G L + L ++ + +L SLREL L
Sbjct: 176 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
N +GD G+ L GL +L L I I+AKG + ++ +SL ++L N++
Sbjct: 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 295
Query: 400 GDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
GDEGA + + L+ + ++ + + + S + VL N + L ++ N +
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355
Query: 459 GAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 517
G + L + L G++ L L C + S +A L N+++ LDL N L D G
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415
Query: 518 CLAQSFK---VVNEALTSIDLAFNEIRDD 543
L +S + + E L D+ ++E +D
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMED 444
>pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor
pdb|3UN9|B Chain B, Crystal Structure Of An Immune Receptor
pdb|3UN9|C Chain C, Crystal Structure Of An Immune Receptor
Length = 372
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%)
Query: 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392
R+L L NS+G E + L L + ++ L + NN ++A G + E + S+ +
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188
Query: 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452
+L +GDEG E +A L +NR + +++ N A A+AR +++ + L L +
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248
Query: 453 NPIGADGAKALSEV 466
N + ++G + L ++
Sbjct: 249 NELSSEGRQVLRDL 262
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQS 216
A+ L + ++++G +A LG + A +EV+ A+ + AG++ V
Sbjct: 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-- 125
Query: 217 NIALKTLNLSGNPIGDEGVKCLCDILV-DNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275
+ + L L N +G E K L D+L+ D + L+LS+ L G + E L N+
Sbjct: 126 -LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184
Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLREL 335
+ L L + + G LA L N ++ L+ SL L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244
Query: 336 HLHGNSIGDEGIRAL 350
HL+ N + EG + L
Sbjct: 245 HLYFNELSSEGRQVL 259
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 448 LDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
L L N +G + K L ++L I TL+L + A+G + + L N +++ L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190
Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538
GL DEG + LA N L +++A+N
Sbjct: 191 LHTGLGDEGLELLAAQLD-RNRQLQELNVAYN 221
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 174 FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 233
GDEGL LA L N+ +E++ A NG A + + +L+ L+L N + E
Sbjct: 195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254
Query: 234 GVKCLCDI 241
G + L D+
Sbjct: 255 GRQVLRDL 262
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
+++ +S G+ L E L N + +S G+ G++ L N L+ L
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216
Query: 224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
N++ N GD L ++ +E L L +L EG + + +L
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAE------- 381
S++E+ L GN+IG E R L ++S+K L+I S + + + E
Sbjct: 33 SVKEIVLSGNTIGTEAARWLSENIASKKD----LEIAEFSDIFTGRVKDEIPEALRLLLQ 88
Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
+ C L + L N G E + D L ++ + + L N + + + IAR L++
Sbjct: 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 442 NSV---------ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE-FV 491
+V + S+ N + K ++ + H ++T+K+ I G E +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
+ L Y + +LDL+ N G+ LA + K L + L + GA A+ A
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSARGAAAVVDA 267
Query: 552 LKANEDVAVTSLNLANN 568
E++ + +L L N
Sbjct: 268 FSKLENIGLQTLRLQYN 284
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAE------- 381
S++E+ L GN+IG E R L ++S+K L+I S + + + E
Sbjct: 32 SVKEIVLSGNTIGTEAARWLSENIASKKD----LEIAEFSDIFTGRVKDEIPEALRLLLQ 87
Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
+ C L + L N G E + D L ++ + + L N + + + IAR L++
Sbjct: 88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 147
Query: 442 NSV---------ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE-FV 491
+V + S+ N + K ++ + H ++T+K+ I G E +
Sbjct: 148 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 207
Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
+ L Y + +LDL+ N G+ LA + K L + L + GA A+ A
Sbjct: 208 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSARGAAAVVDA 266
Query: 552 LKANEDVAVTSLNLANN 568
E++ + +L L N
Sbjct: 267 FSKLENIGLQTLRLQYN 283
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 417 ITTIDLGGNNIHSKGASAIARVLKDNSV-ITSLDLAYNPIGADGAKALSEVLK-FHGNIN 474
+T++DL NN++S + + + +TSL+L+ N +G + L ++L N+
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 475 TLKL-GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 533
+L L G S E V + TI++LDL N + + Q+F + ++TS+
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 534 DLAFNEI---RDDGAFAIAQALKANEDVAVTSLNL-ANNFLTKFGQVISLFFSFLLHQIK 589
+L N++ D I A+ AN V SLNL NN +K ++ F + + +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPAN----VNSLNLRGNNLASKNCAELAKFLASIPASVT 199
Query: 590 SL 591
SL
Sbjct: 200 SL 201
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWIN 393
L+L GN + + L+ L++ + VLD+G N S+K + + N S+ +N
Sbjct: 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144
Query: 394 LYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLA 451
L ND+G + ++++ L + +++L GNN+ SK + +A+ L + +TSLDL+
Sbjct: 145 LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204
Query: 452 YNPIGADGAKALSEVL-KFHGNINTLKLGW-CQIGAS--GAEFVADMLRYNNTISI-LDL 506
N +G L+ + ++ +L L C G S + + D L++ T+ + D+
Sbjct: 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264
Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALK 553
N + E K L +F + + + +D EI + I+ ++
Sbjct: 265 VKNXSK-EQCKALGAAFPNI-QKIILVDKNGKEIHPSHSIPISNLIR 309
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI---RDD 543
G+ V + + ++ LDL N L L Q+F ++TS++L+ N + D
Sbjct: 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69
Query: 544 GAFAIAQALKANEDVAVTSLNLANNFLT 571
I A+ AN VTSLNL+ NFL+
Sbjct: 70 ELVQILAAIPAN----VTSLNLSGNFLS 93
>pdb|1IO0|A Chain A, Crystal Structure Of Tropomodulin C-Terminal Half
Length = 185
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
+K + L N V++ + D A A+AE+LK N+ L+ L + +N I SG +L
Sbjct: 54 LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113
Query: 295 AEALLENSTIRSLH 308
EAL N+++ L
Sbjct: 114 VEALQSNTSLIELR 127
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIAL 220
++ FS V G D F LAE L N T + ++ +N I+ +GI A LQSN +L
Sbjct: 67 VKKFSIV---GTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSL 123
Query: 221 KTLNL--SGNPIGDEGVKCLCDILVDNA 246
L + P+G+ + ++L N
Sbjct: 124 IELRIDNQSQPLGNNVEMEIANMLEKNT 151
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514
I KA +E LK + + + + A +A+ML+ NNT+ L++ +N +
Sbjct: 49 IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108
Query: 515 GAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
G L EAL S + + E+R D +Q L N ++ + ++ N L KFG
Sbjct: 109 GILALV-------EALQS-NTSLIELRIDNQ---SQPLGNNVEMEIANMLEKNTTLLKFG 157
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 109 VEKLLMPKPSRPSKPTAEGMNWSVGAGTNL-LSGFTGKLFRESKQTLNEFAKELRAFSSV 167
VE + PSRP P GMN V AG + L G +G L + L+ ++
Sbjct: 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITI 477
Query: 168 DMSGRNFGDEGLFFLAESLG--------YNQTAEE-VSFAANGITAAGIKAFDGVLQSNI 218
D G + D L FL +++ +N T EE +S GIT + A + +
Sbjct: 478 D--GVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 219 ALKTL-NLSGNPIGDEGVK 236
+KTL N +GD G +
Sbjct: 536 FIKTLPNGYNTLVGDRGTQ 554
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 443 SVITSLDLAYNPIGADGAKALS--EVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNN 499
SV +++D +YN IG+ K + F G N++++ L QI ++F ++ +
Sbjct: 402 SVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI----SKFPKELFSTGS 457
Query: 500 TISILDLRANGLRDEGAKCLA---QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE 556
+S ++L N L + L ++FK LTSIDL FN++ ++ +A
Sbjct: 458 PLSSINLXGNXLTEIPKNSLKDENENFKNT-YLLTSIDLRFNKLT-----KLSDDFRATT 511
Query: 557 DVAVTSLNLANNFLTKF 573
+ ++L+ N +KF
Sbjct: 512 LPYLVGIDLSYNSFSKF 528
>pdb|1PGV|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Tropomodulin C-Terminal Domain
Length = 197
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 215 QSNIALKTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
+ + LK +N++ + E ++ L + ++ +E+ L++ + D A+ + EL++ +
Sbjct: 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS 97
Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTI 304
LRVL + +N + L + L +I
Sbjct: 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSI 128
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 170 SGRNFGDEGLFFLAESLGYNQTAEEVSFA-ANGITAAGIKAFDGVLQSN 217
SG + G E L+F + S+G+ A +++FA A G TAAG+ A ++ S+
Sbjct: 9 SGVDLGTENLYFQSMSVGFI-GAGQLAFALAKGFTAAGVLAAHKIMASS 56
>pdb|3VE7|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE7|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE9|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
pdb|3VE9|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
Length = 215
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 442 NSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 501
N VI SLD +PI + + K +G + +K+GW + G E V +++ + I
Sbjct: 2 NRVILSLD---SPIPEETLR------KLNGKVAGIKVGWPLLLNLGKEKVKELVGLVDGI 52
Query: 502 SILDLR 507
ILDL+
Sbjct: 53 KILDLK 58
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 357 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
R LA+L + NNS S ++ + +C+SL+W++L N
Sbjct: 512 RLENLAILKLSNNSFSG----NIPAELGDCRSLIWLDLNTN 548
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 357 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
R LA+L + NNS S ++ + +C+SL+W++L N
Sbjct: 509 RLENLAILKLSNNSFSG----NIPAELGDCRSLIWLDLNTN 545
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 91/232 (39%), Gaps = 41/232 (17%)
Query: 197 FAANGITAAGIK-AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSS 255
+ +T + +K A + QS +K L+LSGNP+ L +E L LSS
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLNLSS 67
Query: 256 VDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXX 315
L + L++ S LR L+LNNN + + LL +I +LH
Sbjct: 68 NVLYETLD------LESLSTLRTLDLNNNYV---------QELLVGPSIETLH------- 105
Query: 316 XXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375
+ + ++L N I +R L G SR + LD+ N I
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKIT--MLRDLDEGCRSR---VQYLDLKLNEID--- 157
Query: 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
+ AE + +L +NL N I D + + LK T+DL N +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK------TLDLSSNKL 203
>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
Strength, Low Ph Crystal Form
pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
Length = 369
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 491 VADMLRY---NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547
+ + +RY +N + +L A G+ ++ KCLA ++ L L E+R++G
Sbjct: 112 IRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTY------LGEFSLRGKELRENGINR 165
Query: 548 IAQALKANED 557
I L NE+
Sbjct: 166 IGNLLVPNEN 175
>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
Deoxyhypusine Synthase
Length = 361
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 491 VADMLRY---NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547
+ + +RY +N + +L A G+ ++ KCLA ++ L L E+R++G
Sbjct: 104 IRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTY------LGEFSLRGKELRENGINR 157
Query: 548 IAQALKANED 557
I L NE+
Sbjct: 158 IGNLLVPNEN 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,383,090
Number of Sequences: 62578
Number of extensions: 592258
Number of successful extensions: 1786
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 68
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)