Query 007526
Match_columns 600
No_of_seqs 427 out of 4075
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 11:48:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 100.0 5.6E-28 1.2E-32 245.0 35.3 314 222-539 2-318 (319)
2 cd00116 LRR_RI Leucine-rich re 100.0 7.2E-28 1.6E-32 244.2 34.4 312 166-482 2-318 (319)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-31 2.3E-36 267.1 -2.5 390 126-580 46-438 (873)
4 PLN00113 leucine-rich repeat r 100.0 6E-30 1.3E-34 297.0 9.5 383 157-596 159-581 (968)
5 PLN00113 leucine-rich repeat r 100.0 6.9E-30 1.5E-34 296.5 9.2 363 157-572 183-585 (968)
6 KOG4194 Membrane glycoprotein 100.0 2.2E-30 4.8E-35 257.7 -4.2 353 156-567 96-448 (873)
7 KOG1909 Ran GTPase-activating 99.9 2.8E-26 6.2E-31 216.4 21.7 343 214-578 26-377 (382)
8 KOG1909 Ran GTPase-activating 99.9 4E-26 8.6E-31 215.4 22.1 343 149-520 17-378 (382)
9 KOG0444 Cytoskeletal regulator 99.9 1.7E-26 3.7E-31 231.6 -6.6 335 146-539 39-373 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 9.9E-26 2.1E-30 226.2 -8.5 347 157-570 27-374 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 4.9E-26 1.1E-30 217.6 -10.5 61 500-572 482-542 (565)
12 KOG4308 LRR-containing protein 99.9 1.1E-21 2.3E-26 203.6 11.8 417 152-571 42-473 (478)
13 KOG0618 Serine/threonine phosp 99.8 1.1E-22 2.3E-27 213.8 -2.6 354 161-574 44-446 (1081)
14 KOG4308 LRR-containing protein 99.8 3.1E-19 6.6E-24 185.3 12.1 362 150-512 103-473 (478)
15 KOG0472 Leucine-rich repeat pr 99.8 2.4E-22 5.2E-27 192.5 -10.8 355 156-573 62-473 (565)
16 KOG0618 Serine/threonine phosp 99.8 6.3E-21 1.4E-25 200.6 -2.0 247 246-539 241-487 (1081)
17 COG5238 RNA1 Ran GTPase-activa 99.7 4.2E-17 9.1E-22 149.1 15.3 251 148-426 16-283 (388)
18 COG5238 RNA1 Ran GTPase-activa 99.7 2.4E-16 5.3E-21 144.2 15.0 275 217-513 29-317 (388)
19 PRK15387 E3 ubiquitin-protein 99.7 1.9E-17 4.1E-22 179.8 9.3 267 162-521 201-467 (788)
20 PRK15387 E3 ubiquitin-protein 99.7 3.1E-17 6.7E-22 178.2 7.9 276 180-551 193-468 (788)
21 PRK15370 E3 ubiquitin-protein 99.6 9.4E-16 2E-20 167.8 10.8 126 360-514 305-430 (754)
22 PLN03210 Resistant to P. syrin 99.6 3.4E-16 7.4E-21 182.8 7.3 342 157-569 553-904 (1153)
23 PRK15370 E3 ubiquitin-protein 99.6 6.7E-16 1.5E-20 168.9 8.2 261 218-551 178-438 (754)
24 KOG4341 F-box protein containi 99.6 2.1E-15 4.6E-20 146.3 10.6 256 245-523 189-451 (483)
25 KOG4237 Extracellular matrix p 99.6 5.4E-17 1.2E-21 155.9 -1.7 142 151-313 55-199 (498)
26 KOG4341 F-box protein containi 99.6 2E-15 4.3E-20 146.5 7.6 302 219-551 139-450 (483)
27 PLN03210 Resistant to P. syrin 99.5 1E-14 2.3E-19 170.4 8.9 309 162-538 589-903 (1153)
28 KOG4237 Extracellular matrix p 99.5 2E-15 4.4E-20 145.2 -3.1 282 246-573 67-361 (498)
29 KOG2120 SCF ubiquitin ligase, 99.5 2.1E-13 4.5E-18 126.8 9.8 186 360-568 186-373 (419)
30 KOG3207 Beta-tubulin folding c 99.4 1.4E-14 3.1E-19 141.3 -1.7 237 144-402 103-341 (505)
31 KOG2120 SCF ubiquitin ligase, 99.4 3.2E-12 6.9E-17 119.0 9.9 245 248-523 138-386 (419)
32 KOG3207 Beta-tubulin folding c 99.3 4.5E-14 9.7E-19 137.9 -3.8 242 166-430 97-341 (505)
33 KOG0617 Ras suppressor protein 99.2 9.7E-14 2.1E-18 118.7 -7.7 157 245-430 32-188 (264)
34 KOG0617 Ras suppressor protein 99.1 4.3E-13 9.4E-18 114.8 -10.4 157 160-344 31-187 (264)
35 KOG1259 Nischarin, modulator o 99.0 2.6E-10 5.5E-15 106.5 4.0 162 385-578 282-447 (490)
36 KOG1259 Nischarin, modulator o 99.0 8E-11 1.7E-15 109.9 0.6 128 360-512 285-412 (490)
37 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.4E-15 103.0 2.1 107 330-456 19-126 (175)
38 PF14580 LRR_9: Leucine-rich r 99.0 1.5E-10 3.3E-15 103.8 1.1 128 360-507 20-148 (175)
39 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.1E-13 105.9 4.4 151 275-457 141-291 (394)
40 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.4E-13 105.7 4.4 196 277-514 96-292 (394)
41 KOG1947 Leucine rich repeat pr 98.7 2.3E-07 4.9E-12 99.7 13.1 251 245-545 187-445 (482)
42 KOG1859 Leucine-rich repeat pr 98.6 4.9E-09 1.1E-13 109.1 -1.1 127 389-541 166-292 (1096)
43 KOG0531 Protein phosphatase 1, 98.6 1.9E-09 4.1E-14 112.8 -4.6 247 160-456 70-318 (414)
44 KOG2982 Uncharacterized conser 98.6 6.9E-08 1.5E-12 90.6 5.3 111 191-312 46-156 (418)
45 KOG0531 Protein phosphatase 1, 98.5 2.6E-09 5.7E-14 111.7 -5.4 129 189-343 71-199 (414)
46 KOG1947 Leucine rich repeat pr 98.5 1.4E-06 3E-11 93.6 15.4 235 300-572 186-441 (482)
47 KOG1859 Leucine-rich repeat pr 98.5 1.8E-08 3.8E-13 105.0 0.6 134 360-513 188-323 (1096)
48 KOG3665 ZYG-1-like serine/thre 98.5 8.2E-07 1.8E-11 97.2 12.3 34 246-284 60-93 (699)
49 KOG3665 ZYG-1-like serine/thre 98.5 1.3E-06 2.7E-11 95.7 12.5 117 329-458 147-265 (699)
50 KOG2982 Uncharacterized conser 98.4 2.1E-07 4.6E-12 87.3 5.2 210 165-401 48-263 (418)
51 KOG0532 Leucine-rich repeat (L 98.4 2.7E-09 5.9E-14 108.1 -7.9 35 361-400 100-134 (722)
52 KOG0532 Leucine-rich repeat (L 98.3 1.9E-08 4.2E-13 102.1 -5.9 79 221-315 78-156 (722)
53 PF13855 LRR_8: Leucine rich r 98.0 2E-07 4.4E-12 68.5 -3.5 16 499-514 25-40 (61)
54 PLN03150 hypothetical protein; 98.0 5.9E-06 1.3E-10 90.7 6.4 86 361-458 420-505 (623)
55 PLN03150 hypothetical protein; 98.0 4.7E-06 1E-10 91.5 4.7 109 416-540 419-527 (623)
56 KOG4658 Apoptotic ATPase [Sign 98.0 9.5E-07 2.1E-11 99.2 -1.4 131 161-310 544-676 (889)
57 KOG4579 Leucine-rich repeat (L 97.9 6.3E-06 1.4E-10 68.8 2.7 114 415-545 27-140 (177)
58 PF13855 LRR_8: Leucine rich r 97.9 4.9E-07 1.1E-11 66.5 -4.0 61 499-570 1-61 (61)
59 KOG4579 Leucine-rich repeat (L 97.8 4.3E-06 9.4E-11 69.7 -0.3 112 303-431 28-139 (177)
60 KOG4658 Apoptotic ATPase [Sign 97.8 1.4E-05 3.1E-10 89.9 3.0 131 245-395 544-676 (889)
61 KOG4242 Predicted myosin-I-bin 97.5 0.0001 2.2E-09 74.0 5.1 347 188-553 133-493 (553)
62 KOG4242 Predicted myosin-I-bin 97.5 3.4E-05 7.3E-10 77.3 1.6 315 189-521 164-490 (553)
63 KOG1644 U2-associated snRNP A' 97.5 2.3E-05 4.9E-10 70.0 0.4 106 360-480 43-149 (233)
64 KOG2123 Uncharacterized conser 97.4 5.6E-05 1.2E-09 70.8 1.8 113 386-515 18-131 (388)
65 PF12799 LRR_4: Leucine Rich r 97.4 0.00011 2.3E-09 49.5 2.7 37 360-401 2-38 (44)
66 PF12799 LRR_4: Leucine Rich r 97.4 0.00016 3.4E-09 48.7 3.4 36 388-428 2-37 (44)
67 KOG2123 Uncharacterized conser 97.4 7.7E-05 1.7E-09 69.9 1.7 105 189-308 18-123 (388)
68 KOG1644 U2-associated snRNP A' 97.2 0.00013 2.8E-09 65.3 1.6 17 328-344 62-78 (233)
69 KOG3864 Uncharacterized conser 97.1 0.00025 5.4E-09 63.6 2.3 83 444-538 102-186 (221)
70 KOG3735 Tropomodulin and leiom 96.9 0.0029 6.3E-08 61.2 7.5 120 387-506 198-320 (353)
71 KOG3864 Uncharacterized conser 96.9 0.00053 1.1E-08 61.6 2.3 84 415-509 101-186 (221)
72 KOG2739 Leucine-rich acidic nu 96.4 0.0013 2.8E-08 61.6 1.3 61 360-429 44-105 (260)
73 KOG2739 Leucine-rich acidic nu 96.4 0.00096 2.1E-08 62.5 0.3 63 359-426 65-127 (260)
74 PRK15386 type III secretion pr 96.2 0.0039 8.5E-08 63.4 3.8 138 158-340 48-187 (426)
75 KOG3735 Tropomodulin and leiom 96.2 0.038 8.3E-07 53.7 9.9 135 350-484 189-326 (353)
76 smart00368 LRR_RI Leucine rich 95.9 0.014 3.1E-07 34.8 3.5 24 499-522 2-25 (28)
77 PRK15386 type III secretion pr 95.9 0.0098 2.1E-07 60.6 4.6 75 186-286 48-124 (426)
78 smart00368 LRR_RI Leucine rich 95.8 0.015 3.3E-07 34.7 3.6 25 443-467 2-26 (28)
79 PF13516 LRR_6: Leucine Rich r 95.8 0.0064 1.4E-07 34.8 1.8 21 499-519 2-22 (24)
80 PF13516 LRR_6: Leucine Rich r 95.3 0.012 2.6E-07 33.7 1.8 21 443-463 2-22 (24)
81 smart00367 LRR_CC Leucine-rich 93.8 0.072 1.6E-06 31.1 2.7 22 498-519 1-23 (26)
82 smart00367 LRR_CC Leucine-rich 91.0 0.26 5.7E-06 28.6 2.6 20 387-406 2-22 (26)
83 PF13504 LRR_7: Leucine rich r 87.2 0.39 8.4E-06 24.8 1.2 10 501-510 3-12 (17)
84 KOG3763 mRNA export factor TAP 83.0 1.8 3.9E-05 45.4 4.8 38 189-228 217-254 (585)
85 KOG3763 mRNA export factor TAP 80.6 3.4 7.3E-05 43.5 5.8 37 359-397 218-254 (585)
86 PF00560 LRR_1: Leucine Rich R 76.8 1.1 2.4E-05 24.8 0.6 12 560-571 2-13 (22)
87 PF13306 LRR_5: Leucine rich r 75.0 0.22 4.7E-06 42.4 -4.1 84 411-509 8-91 (129)
88 smart00369 LRR_TYP Leucine-ric 72.0 3.3 7.1E-05 23.8 1.8 13 500-512 3-15 (26)
89 smart00370 LRR Leucine-rich re 72.0 3.3 7.1E-05 23.8 1.8 13 500-512 3-15 (26)
90 PF13306 LRR_5: Leucine rich r 66.0 0.37 8E-06 40.9 -4.6 105 383-508 8-112 (129)
91 smart00365 LRR_SD22 Leucine-ri 59.2 8.3 0.00018 22.4 1.8 13 500-512 3-15 (26)
92 KOG0473 Leucine-rich repeat pr 44.0 1.1 2.3E-05 41.8 -5.4 59 360-428 66-124 (326)
93 KOG0473 Leucine-rich repeat pr 40.7 0.81 1.8E-05 42.5 -6.7 59 276-344 67-125 (326)
94 smart00364 LRR_BAC Leucine-ric 36.5 21 0.00046 20.8 1.0 14 500-513 3-16 (26)
95 PF03382 DUF285: Mycoplasma pr 22.3 35 0.00077 28.5 0.5 13 435-447 53-65 (120)
96 PF07723 LRR_2: Leucine Rich R 21.9 69 0.0015 18.5 1.5 8 474-481 3-10 (26)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=5.6e-28 Score=244.98 Aligned_cols=314 Identities=31% Similarity=0.400 Sum_probs=195.1
Q ss_pred EEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCC--hhhHHHHHHHHh
Q 007526 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID--YSGFTSLAEALL 299 (600)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~ 299 (600)
.|+|.++.+++..+..+... ..+|++|++++|.+++.+...++..+...++|++|+++++.+. ..++..++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 34555555554433332222 2446666666666666666666666666666666666666655 445555555565
Q ss_pred hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (600)
Q Consensus 300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l 379 (600)
.+++|++|++++|.+.......+...... ++|++|++++|.+++.+...+...+....++|+.|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 66666666666666654333333333333 55777777777766655555555554332467777777777776555556
Q ss_pred HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (600)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (600)
...+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 66666667777777777777776666666666666677777777777777666666666666677777777777777666
Q ss_pred HHHHHHHHh-hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526 460 AKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (600)
Q Consensus 460 ~~~l~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n 538 (600)
...+...+. ..+.|++|++++|.+++.+...+...+..+++|+++++++|.+++.+...+...+...-+.|++||+.+|
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 555554432 2456777777777776666666666666666777777777777776666666655443245666666665
Q ss_pred C
Q 007526 539 E 539 (600)
Q Consensus 539 ~ 539 (600)
.
T Consensus 318 ~ 318 (319)
T cd00116 318 S 318 (319)
T ss_pred C
Confidence 4
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=7.2e-28 Score=244.19 Aligned_cols=312 Identities=33% Similarity=0.440 Sum_probs=211.8
Q ss_pred EEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCC--hHHHHHHHHHHh
Q 007526 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILV 243 (600)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~ 243 (600)
.|+|.++.+.+.....+... ..+|++|++++|.+++.+...++..+...++|++|+++++.+. ..++..++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 46777777765554433333 3558888888888888878888877777788888888888776 566666777777
Q ss_pred hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhC-CCccEEEccCCCCChHHHHHH
Q 007526 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL 322 (600)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l 322 (600)
.+++|++|++++|.+.......+...... ++|++|++++|++++.++..+...+..+ ++|++|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 77888888888888776555556555444 6688888888888777777777777666 777777777777776665566
Q ss_pred HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH
Q 007526 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (600)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (600)
...+..+++|++|++++|.+++.++..+...+... +.|++|++++|.+++.+...+...+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 66666667777777777777766666555555432 46777777777766666666666666666777777777766666
Q ss_pred HHHHHHHHhhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC-CCccEEeccC
Q 007526 403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGW 480 (600)
Q Consensus 403 ~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~ 480 (600)
++..+...+.. .+.|++|++++|.+++.+...+...+..+++|+++++++|.+++++...+...+... +.|++|++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 55555544332 456666666666666666666666666666666666666666666666666665555 5666666655
Q ss_pred cC
Q 007526 481 CQ 482 (600)
Q Consensus 481 n~ 482 (600)
+.
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 54
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-31 Score=267.10 Aligned_cols=390 Identities=18% Similarity=0.149 Sum_probs=287.3
Q ss_pred CCCcccccccccccccccccccHhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHH
Q 007526 126 EGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAA 205 (600)
Q Consensus 126 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~ 205 (600)
+++.|.|. ..++.|.+..+...+...+..+ -.+.-+.||+++|.+.+.++. .+.++++|+++++..|.++
T Consensus 46 cpa~c~c~--~~lldcs~~~lea~~~~~l~g~--lp~~t~~LdlsnNkl~~id~~----~f~nl~nLq~v~l~~N~Lt-- 115 (873)
T KOG4194|consen 46 CPATCPCN--TRLLDCSDRELEAIDKSRLKGF--LPSQTQTLDLSNNKLSHIDFE----FFYNLPNLQEVNLNKNELT-- 115 (873)
T ss_pred CCCcCCCC--ceeeecCccccccccccccCCc--CccceeeeeccccccccCcHH----HHhcCCcceeeeeccchhh--
Confidence 34555555 3344555555555444444333 134456899999999887643 3456799999999999876
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC
Q 007526 206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285 (600)
Q Consensus 206 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 285 (600)
.++.......+|+.|+|.+|.|.....+.+... +.|+.|+|+.|.|+......++.. .++++|+|++|.
T Consensus 116 ---~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l----~alrslDLSrN~is~i~~~sfp~~----~ni~~L~La~N~ 184 (873)
T KOG4194|consen 116 ---RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL----PALRSLDLSRNLISEIPKPSFPAK----VNIKKLNLASNR 184 (873)
T ss_pred ---hcccccccccceeEEeeeccccccccHHHHHhH----hhhhhhhhhhchhhcccCCCCCCC----CCceEEeecccc
Confidence 344444445679999999999988755555444 889999999999887655455444 689999999999
Q ss_pred CChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEE
Q 007526 286 IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365 (600)
Q Consensus 286 i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 365 (600)
|++-+.. .|..+.+|..|.|+.|.++..+. ..|+.+++|+.|+|..|.|.....-. + ...++|+.|.
T Consensus 185 It~l~~~----~F~~lnsL~tlkLsrNrittLp~----r~Fk~L~~L~~LdLnrN~irive~lt-F----qgL~Sl~nlk 251 (873)
T KOG4194|consen 185 ITTLETG----HFDSLNSLLTLKLSRNRITTLPQ----RSFKRLPKLESLDLNRNRIRIVEGLT-F----QGLPSLQNLK 251 (873)
T ss_pred ccccccc----cccccchheeeecccCcccccCH----HHhhhcchhhhhhccccceeeehhhh-h----cCchhhhhhh
Confidence 9865433 44567799999999999998887 45567999999999999876431111 1 3445899999
Q ss_pred CcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007526 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (600)
Q Consensus 366 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 445 (600)
|..|.|....- ..+-.+.++++|+|+.|++.... ...+..++.|+.|++++|.|....+..+.- +++|
T Consensus 252 lqrN~I~kL~D----G~Fy~l~kme~l~L~~N~l~~vn----~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf----tqkL 319 (873)
T KOG4194|consen 252 LQRNDISKLDD----GAFYGLEKMEHLNLETNRLQAVN----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSF----TQKL 319 (873)
T ss_pred hhhcCcccccC----cceeeecccceeecccchhhhhh----cccccccchhhhhccchhhhheeecchhhh----cccc
Confidence 99998876321 23557889999999999887642 234556789999999999988776655543 5999
Q ss_pred CEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC---hHHHHHHHHH
Q 007526 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR---DEGAKCLAQS 522 (600)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~---~~~~~~l~~~ 522 (600)
++|+|++|.|+......+.. +..|++|+++.|.|+...-.+|..+ ++|++|||++|.|. +++...+..+
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~~l----ssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFVGL----SSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred eeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHHHh----hhhhhhcCcCCeEEEEEecchhhhccc
Confidence 99999999988766655533 3489999999999977655555544 99999999999765 3344445554
Q ss_pred HhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHH
Q 007526 523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLF 580 (600)
Q Consensus 523 l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 580 (600)
++|+.|++.+|+|+.....++..+.. |++|||.+|.|-.+-..++..
T Consensus 392 -----~~LrkL~l~gNqlk~I~krAfsgl~~------LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 392 -----PSLRKLRLTGNQLKSIPKRAFSGLEA------LEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred -----hhhhheeecCceeeecchhhhccCcc------cceecCCCCcceeeccccccc
Confidence 88999999999999877777766555 999999999998887777765
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6e-30 Score=297.00 Aligned_cols=383 Identities=19% Similarity=0.203 Sum_probs=179.3
Q ss_pred HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (600)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (600)
.+..+++|++|+|++|.+... ++..+..+++|++|++++|.++. .++..+..+++|++|++++|.+...
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~--- 227 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGE--- 227 (968)
T ss_pred HHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcC----cCChHHcCcCCccEEECcCCccCCc---
Confidence 344566677777766665432 23444555666666666666532 1223334455566666666555432
Q ss_pred HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (600)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 316 (600)
++..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+++ .++..+..+++|++|++++|.++.
T Consensus 228 -~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 228 -IPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred -CChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeecc
Confidence 333344445555555555555432 22233334555555555554432 123333344444444444444332
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH--------------------HHhhhcCCCcccEEECcCCCCChhhH
Q 007526 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL--------------------MSGLSSRKGKLAVLDIGNNSISAKGA 376 (600)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--------------------~~~l~~~~~~L~~L~Ls~n~i~~~~~ 376 (600)
. ++..+..+++|+.|++++|.+.+.....+ ...+ ...++|+.|++++|.+...
T Consensus 299 ~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~-- 371 (968)
T PLN00113 299 E----IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGE-- 371 (968)
T ss_pred C----CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEee--
Confidence 1 11222334444444444444332211111 0001 1112344444444433321
Q ss_pred HHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (600)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (600)
++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++... +..+..++.|+.|++++|.+.
T Consensus 372 --~p~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 372 --IPEGLCSSGNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGEL----PSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred --CChhHhCcCCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCEeeeEC----ChhHhcCCCCCEEECcCCccc
Confidence 222222223333333333322221 2223333444444444444443321 112222344444444444333
Q ss_pred hhHHHH--------------------HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 457 ADGAKA--------------------LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516 (600)
Q Consensus 457 ~~~~~~--------------------l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 516 (600)
+..... +... ...++|++|++++|++++..+..+.. +++|++|++++|.+....+
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~----l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGS----LSELMQLKLSENKLSGEIP 516 (968)
T ss_pred CccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhh----hhccCEEECcCCcceeeCC
Confidence 211110 0000 12245666677776666554444433 3777777777777776555
Q ss_pred HHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhhh
Q 007526 517 KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC 596 (600)
Q Consensus 517 ~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~c 596 (600)
..+... ++|++|+|++|.+++..+..+..+.. |+.|+|++|++.......+.. ...++.+++++|
T Consensus 517 ~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~p~~l~~----l~~L~~l~ls~N 581 (968)
T PLN00113 517 DELSSC-----KKLVSLDLSHNQLSGQIPASFSEMPV------LSQLDLSQNQLSGEIPKNLGN----VESLVQVNISHN 581 (968)
T ss_pred hHHcCc-----cCCCEEECCCCcccccCChhHhCccc------CCEEECCCCcccccCChhHhc----CcccCEEeccCC
Confidence 445443 67888888888887766666655433 888888888877544433322 244566666655
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6.9e-30 Score=296.51 Aligned_cols=363 Identities=17% Similarity=0.193 Sum_probs=201.8
Q ss_pred HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (600)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (600)
.+..+++|++|+|++|.+... ++..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+......
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceeccccCh
Confidence 344556666666666655422 233444455555555555554321 222233444455555555444322000
Q ss_pred --------------------HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH
Q 007526 237 --------------------CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (600)
Q Consensus 237 --------------------~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 296 (600)
.++..+..+++|++|++++|.++.. ++..+.++++|++|++++|.++. .++.
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~----~~~~ 326 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE----IPELVIQLQNLEILHLFSNNFTG----KIPV 326 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC----CChhHcCCCCCcEEECCCCccCC----cCCh
Confidence 0222223334444444444444332 22333344555555555555542 2334
Q ss_pred HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhH
Q 007526 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (600)
Q Consensus 297 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~ 376 (600)
.+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+.....+. ..++|+.|++++|.+.....
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-----~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGE----IPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-----SSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCc----CChHHhCCCCCcEEECCCCeeEeeCChhHh-----CcCCCCEEECcCCEecccCC
Confidence 445566666666666665432 223344566777777777766543221111 12245555555554443200
Q ss_pred H--------------------HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHH
Q 007526 377 F--------------------HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 436 (600)
Q Consensus 377 ~--------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 436 (600)
. .++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.....
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~p---- 469 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR----INSRKWDMPSLQMLSLARNKFFGGLP---- 469 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc----cChhhccCCCCcEEECcCceeeeecC----
Confidence 0 0333344444555555555544432 22223344556666666655543211
Q ss_pred HHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 437 RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516 (600)
Q Consensus 437 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 516 (600)
..+ ..++|+.|++++|.++..... .+..+++|++|++++|.+.+..+.. +..+++|++|+|++|.+++..+
T Consensus 470 ~~~-~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 470 DSF-GSKRLENLDLSRNQFSGAVPR----KLGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred ccc-ccccceEEECcCCccCCccCh----hhhhhhccCEEECcCCcceeeCChH----HcCccCCCEEECCCCcccccCC
Confidence 111 236788888888877654333 3455679999999999998765544 4456999999999999998777
Q ss_pred HHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526 517 KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (600)
Q Consensus 517 ~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 572 (600)
..+..+ ++|++||+++|++.+..+..+..... |+.|++++|++..
T Consensus 541 ~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~------L~~l~ls~N~l~~ 585 (968)
T PLN00113 541 ASFSEM-----PVLSQLDLSQNQLSGEIPKNLGNVES------LVQVNISHNHLHG 585 (968)
T ss_pred hhHhCc-----ccCCEEECCCCcccccCChhHhcCcc------cCEEeccCCccee
Confidence 767665 88999999999999887777765443 9999999999875
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-30 Score=257.74 Aligned_cols=353 Identities=21% Similarity=0.221 Sum_probs=273.0
Q ss_pred HHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 007526 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (600)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 235 (600)
.++.++++|++++|..|.++. ++.......+|+.|+|.+|.|+...-+.+.. .+.|++||||.|.|+....
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se~L~~----l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSEELSA----LPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HHHhcCCcceeeeeccchhhh-----cccccccccceeEEeeeccccccccHHHHHh----HhhhhhhhhhhchhhcccC
Confidence 556789999999999998876 4554445678999999999987665555543 3669999999999876544
Q ss_pred HHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (600)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 315 (600)
..++. -.++++|+|++|.|++.+...|..+ .+|..|.|+.|+|+ ......|+.+++|+.|+|..|.+.
T Consensus 167 ~sfp~----~~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNrit----tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 167 PSFPA----KVNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRIT----TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCCCC----CCCceEEeecccccccccccccccc----chheeeecccCccc----ccCHHHhhhcchhhhhhcccccee
Confidence 33433 3789999999999999877777666 78999999999996 333445666999999999999986
Q ss_pred hHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (600)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 395 (600)
.... -.|.++++|+.|.|..|++.. +-.+......++++|+|..|++... -..++-+++.|+.|+||
T Consensus 235 ive~----ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 235 IVEG----LTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQLDLS 301 (873)
T ss_pred eehh----hhhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhhh----hcccccccchhhhhccc
Confidence 5422 346689999999999998764 2222223445899999999998874 23456789999999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccE
Q 007526 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (600)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (600)
+|.|... -.+.+..++.|+.|+|+.|+|+.....++..+ ..|++|+|+.|.|+......+ ....+|++
T Consensus 302 ~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af----~~lssL~~ 369 (873)
T KOG4194|consen 302 YNAIQRI----HIDSWSFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAF----VGLSSLHK 369 (873)
T ss_pred hhhhhee----ecchhhhcccceeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHH----HHhhhhhh
Confidence 9988764 33556778999999999999998777777766 899999999998865533333 44569999
Q ss_pred EeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhC
Q 007526 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 555 (600)
Q Consensus 476 L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~ 555 (600)
||++.|.+...- +.-+..+..++.|+.|++.||+|..+.-..+... ..|++|||.+|.|....+.++..+ .
T Consensus 370 LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl-----~~LE~LdL~~NaiaSIq~nAFe~m-~-- 440 (873)
T KOG4194|consen 370 LDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL-----EALEHLDLGDNAIASIQPNAFEPM-E-- 440 (873)
T ss_pred hcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeecchhhhccC-----cccceecCCCCcceeecccccccc-h--
Confidence 999999764321 1122334445999999999999999888877776 889999999999998888887766 4
Q ss_pred cccceeEEEccC
Q 007526 556 EDVAVTSLNLAN 567 (600)
Q Consensus 556 ~~~~L~~L~l~~ 567 (600)
|++|.+..
T Consensus 441 ----Lk~Lv~nS 448 (873)
T KOG4194|consen 441 ----LKELVMNS 448 (873)
T ss_pred ----hhhhhhcc
Confidence 77776654
No 7
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-26 Score=216.42 Aligned_cols=343 Identities=25% Similarity=0.327 Sum_probs=263.7
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCC---CC---hHHHHHHHHHHhcCCCccEEeecCCCCC
Q 007526 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD---LR---DEGAKAIAELLKNNSILRVLELNNNMID 287 (600)
Q Consensus 214 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~---l~---~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 287 (600)
+.....++.|+||+|.++......++..+.+.+.|+..++++-. +. ......+...+..+++|++||||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 33344445555555555444444444444444444444444321 11 1234456666777788899999999888
Q ss_pred hhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECc
Q 007526 288 YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG 367 (600)
Q Consensus 288 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 367 (600)
..++..+.+.+.++..|++|.|.+|.++..+...+..++..+. .++ .. ...++|+.+..+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~k-----------k~-~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNK-----------KA-ASKPKLRVFICG 165 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHh-----------cc-CCCcceEEEEee
Confidence 8888888888888888999999888888888877776554421 111 01 244589999999
Q ss_pred CCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCE
Q 007526 368 NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447 (600)
Q Consensus 368 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 447 (600)
.|.+.+.+...++..+...+.|+.+.++.|.|...|+..+..++..|++|+.|||.+|.++..+..+++..++..++|++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred EECcCCCCChhHHHHHHHHHhh-CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC--ChHHHHHHHHHHh
Q 007526 448 LDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL--RDEGAKCLAQSFK 524 (600)
Q Consensus 448 L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~ 524 (600)
|++++|.+.+.|..++.+.+.. .+.|++|.+.+|.|+..+...++..+...|.|..|+|++|.+ .++++..+...+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 9999999999999999888865 789999999999999999988888888889999999999999 7778887777763
Q ss_pred hcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526 525 VVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578 (600)
Q Consensus 525 ~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 578 (600)
....-+...+.+.+.+...+............. -+.++..++-+.+.+.+-+
T Consensus 326 ~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t--~~e~~ed~e~ie~e~~ee~ 377 (382)
T KOG1909|consen 326 TAHVLLEDIDDSEEELEREGEEDEEEEVEKKET--FKELNEDGEVIEEEGIEEL 377 (382)
T ss_pred cccccchhhchhHHHHHhhhhhHHHHHHHhcCc--chhhcccccccchhHHHHh
Confidence 332456677788888888877777666655553 6777777887777665543
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.95 E-value=4e-26 Score=215.44 Aligned_cols=343 Identities=24% Similarity=0.339 Sum_probs=214.9
Q ss_pred hHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCC---C---HHHHHHHHHHHhcCCCccE
Q 007526 149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGI---T---AAGIKAFDGVLQSNIALKT 222 (600)
Q Consensus 149 ~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l---~---~~~~~~l~~~l~~~~~L~~ 222 (600)
.+.+.+.+.......+++|+||||.++.+....++..+...++|+..++++--. . ...+..|.+.+..+++|++
T Consensus 17 ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 17 EDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred hhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 344566677778889999999999999999999999999999999999998531 1 2446667778888899999
Q ss_pred EEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhc---------CCCccEEeecCCCCChhhHHH
Q 007526 223 LNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN---------NSILRVLELNNNMIDYSGFTS 293 (600)
Q Consensus 223 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~---------~~~L~~L~L~~n~i~~~~~~~ 293 (600)
||||.|.++..+...+.+.+.++..|++|.|.+|.+...+...++.++.. -+.|+++..+.|++.+.+...
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence 99999999999999999999999999999999999999888887775432 234555555555555555555
Q ss_pred HHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCCh
Q 007526 294 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (600)
Q Consensus 294 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 373 (600)
++..+...+.|+.+.+..|.+...++..+..++..|++|+.|||..|- ++.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-----------------------------ft~ 227 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-----------------------------FTL 227 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-----------------------------hhh
Confidence 555555455555555555555444444444444455555555555544 444
Q ss_pred hhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC
Q 007526 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452 (600)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 452 (600)
.+...+++.++.+++|++|++++|.+.+.|...+.+++.. .+.|+.|.+.+|.|+.++...++..+...|.|+.|+|++
T Consensus 228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 4444455555555555555555555555555555555443 455555555555555555555555555555555555555
Q ss_pred CCC--ChhHHHHHHHHHh-hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHH
Q 007526 453 NPI--GADGAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA 520 (600)
Q Consensus 453 n~i--~~~~~~~l~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 520 (600)
|.+ +++++..+...+. ....+...+.+.+.+.+.+.............=+.++..++.+.+.+...+.
T Consensus 308 N~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~ 378 (382)
T KOG1909|consen 308 NRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEELK 378 (382)
T ss_pred ccccccchhHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHhh
Confidence 555 3333333333321 1123334444445555554444444444445555555555555555554443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.7e-26 Score=231.58 Aligned_cols=335 Identities=19% Similarity=0.191 Sum_probs=242.6
Q ss_pred ccHhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEc
Q 007526 146 LFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225 (600)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L 225 (600)
+.+.....+++-+..+.+|++|.+++|++.. +-..+..++.|+.+.+.+|.+...|+ +.-+.++..|+.|||
T Consensus 39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~LRsv~~R~N~LKnsGi---P~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 39 LNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPRLRSVIVRDNNLKNSGI---PTDIFRLKDLTILDL 110 (1255)
T ss_pred echhhhhhChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchhhHHHhhhccccccCCC---Cchhcccccceeeec
Confidence 3444555666667788888888888887765 34456667888888888888765443 334456778899999
Q ss_pred cCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCcc
Q 007526 226 SGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR 305 (600)
Q Consensus 226 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 305 (600)
|+|++.. .+..+...+++-.|+|++|+|..+.-..+... ..|-.|||++|++ ..++..+..+..|+
T Consensus 111 ShNqL~E-----vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL----tDLLfLDLS~NrL-----e~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 111 SHNQLRE-----VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL----TDLLFLDLSNNRL-----EMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhhhhh-----cchhhhhhcCcEEEEcccCccccCCchHHHhh----HhHhhhccccchh-----hhcCHHHHHHhhhh
Confidence 9998865 45666667888889999998877544444444 6788899999988 67788888888999
Q ss_pred EEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHh
Q 007526 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385 (600)
Q Consensus 306 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 385 (600)
+|+|++|.+.......+ ..+.+|+.|++++.+-+-..+..-...+ .+|..+|+|.|++.. +|+.+-+
T Consensus 177 tL~Ls~NPL~hfQLrQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l----~NL~dvDlS~N~Lp~-----vPecly~ 243 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDL----HNLRDVDLSENNLPI-----VPECLYK 243 (1255)
T ss_pred hhhcCCChhhHHHHhcC----ccchhhhhhhcccccchhhcCCCchhhh----hhhhhccccccCCCc-----chHHHhh
Confidence 99999998876655443 3677888888888764433222222222 278899999998887 8888889
Q ss_pred CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (600)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (600)
+++|+.|+||+|+|++.. .....-.+|++|+++.|+++. ++.+++.++.|+.|.+.+|+++-+|+ +.
T Consensus 244 l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeGi---PS 310 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEGI---PS 310 (1255)
T ss_pred hhhhheeccCcCceeeee-----ccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccCC---cc
Confidence 999999999999888732 122223678999999998876 66777777999999999998876653 44
Q ss_pred HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (600)
Q Consensus 466 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~ 539 (600)
.++.+.+|+.+..++|.+. .+.+.+..|..|+.|.|+.|++-.- +..+.-. +.|+.||+..|.
T Consensus 311 GIGKL~~Levf~aanN~LE-----lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL-----~~l~vLDlreNp 373 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-----LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLL-----PDLKVLDLRENP 373 (1255)
T ss_pred chhhhhhhHHHHhhccccc-----cCchhhhhhHHHHHhcccccceeec-hhhhhhc-----CCcceeeccCCc
Confidence 5556668888888888763 3456677778999999999965541 1222222 778999999884
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=9.9e-26 Score=226.16 Aligned_cols=347 Identities=18% Similarity=0.219 Sum_probs=263.4
Q ss_pred HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (600)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (600)
-++++..++-|.|....+ ..+++.++.+.+|++|.+++|++. .+.+.+..++.|+.+++.+|++...|
T Consensus 27 ~v~qMt~~~WLkLnrt~L-----~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsG-- 94 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKL-----EQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSG-- 94 (1255)
T ss_pred hHHHhhheeEEEechhhh-----hhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCC--
Confidence 345677778887765544 447888888999999999999864 45566778899999999999987765
Q ss_pred HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHH-hhCCCccEEEccCCCCC
Q 007526 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL-LENSTIRSLHLNGNYGG 315 (600)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~ 315 (600)
++.-+.++..|+.|+|++|++.+ .+..+.+-+++..|+|++|+| ..|+..+ .++..|-.|+|++|.+.
T Consensus 95 -iP~diF~l~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~I-----etIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 95 -IPTDIFRLKDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNI-----ETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred -CCchhcccccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCcc-----ccCCchHHHhhHhHhhhccccchhh
Confidence 55666678999999999999876 344455558999999999998 4555543 35788999999999875
Q ss_pred hHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (600)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 395 (600)
. ++..+..+..|++|+|++|.+....++.++ ...+|+.|.+++.+-+ ...+|..+..+.+|..+|+|
T Consensus 164 ~-----LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-----smtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 164 M-----LPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-----SMTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred h-----cCHHHHHHhhhhhhhcCCChhhHHHHhcCc-----cchhhhhhhcccccch---hhcCCCchhhhhhhhhcccc
Confidence 4 445566778899999999998776666553 3347888888886433 22477778888899999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccE
Q 007526 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (600)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (600)
.|.+.. +++.+.++++|+.|+|++|.|+.... ....+ .+|++|+++.|+++. ++.++..+++|+.
T Consensus 231 ~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~-~~~~W----~~lEtLNlSrNQLt~-----LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 231 ENNLPI-----VPECLYKLRNLRRLNLSGNKITELNM-TEGEW----ENLETLNLSRNQLTV-----LPDAVCKLTKLTK 295 (1255)
T ss_pred ccCCCc-----chHHHhhhhhhheeccCcCceeeeec-cHHHH----hhhhhhccccchhcc-----chHHHhhhHHHHH
Confidence 999887 78888899999999999999987432 23444 789999999998864 4566667789999
Q ss_pred EeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhC
Q 007526 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 555 (600)
Q Consensus 476 L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~ 555 (600)
|.+.+|+++-.+. ...+.++.+|+++..++|.+.-. +..++.+ ..|+.|.|+.|.+.. -+..|.-+
T Consensus 296 Ly~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LElV-PEglcRC-----~kL~kL~L~~NrLiT-LPeaIHlL---- 361 (1255)
T KOG0444|consen 296 LYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLELV-PEGLCRC-----VKLQKLKLDHNRLIT-LPEAIHLL---- 361 (1255)
T ss_pred HHhccCcccccCC---ccchhhhhhhHHHHhhccccccC-chhhhhh-----HHHHHhcccccceee-chhhhhhc----
Confidence 9999998876543 34555568999999999976643 3446666 679999999997652 23333222
Q ss_pred cccceeEEEccCCCC
Q 007526 556 EDVAVTSLNLANNFL 570 (600)
Q Consensus 556 ~~~~L~~L~l~~n~l 570 (600)
+ .|+.||+..|+-
T Consensus 362 ~--~l~vLDlreNpn 374 (1255)
T KOG0444|consen 362 P--DLKVLDLRENPN 374 (1255)
T ss_pred C--CcceeeccCCcC
Confidence 2 299999999863
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=4.9e-26 Score=217.63 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=40.8
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526 500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (600)
Q Consensus 500 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 572 (600)
.++.+-.++|+|....+..+..+ .+|.+||+.+|.|.. .+..+..+.. +++|+++||+|..
T Consensus 482 ~lEtllas~nqi~~vd~~~l~nm-----~nL~tLDL~nNdlq~-IPp~Lgnmtn------L~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGLKNM-----RNLTTLDLQNNDLQQ-IPPILGNMTN------LRHLELDGNPFRQ 542 (565)
T ss_pred HHHHHHhccccccccChHHhhhh-----hhcceeccCCCchhh-CChhhccccc------eeEEEecCCccCC
Confidence 34444444455555555545555 789999999998874 3444555444 9999999999884
No 12
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-21 Score=203.59 Aligned_cols=417 Identities=29% Similarity=0.393 Sum_probs=350.9
Q ss_pred HHHHHHHHhCCCccEEEcCCCCCCHHH---HHHHHHHhccCCC----ccEEEcccCCCCHHHHHHHHHHHhcCCCccEEE
Q 007526 152 QTLNEFAKELRAFSSVDMSGRNFGDEG---LFFLAESLGYNQT----AEEVSFAANGITAAGIKAFDGVLQSNIALKTLN 224 (600)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~l~~~~~----L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~ 224 (600)
.++.......+.+..+.++.+...+.+ .......+....+ +..|+|.+|.+.+.+...++..+..+++|+.|+
T Consensus 42 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~ 121 (478)
T KOG4308|consen 42 RDLRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLD 121 (478)
T ss_pred HHHHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhh
Confidence 344455556677778888887777666 3333334443222 889999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHhhC-CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh---
Q 007526 225 LSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE--- 300 (600)
Q Consensus 225 Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--- 300 (600)
+++|.+++.+...+++.+... +.++.|++..|.++..+...++..+..+..++.++++.|.+...+...+...+..
T Consensus 122 l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~ 201 (478)
T KOG4308|consen 122 LSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAAS 201 (478)
T ss_pred cccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhc
Confidence 999999999999999998886 7899999999999999999999999989999999999999988888888888875
Q ss_pred -CCCccEEEccCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH
Q 007526 301 -NSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (600)
Q Consensus 301 -~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~ 378 (600)
..++++|++++|.++...+..+...+...++ +.+|++..|.+.+.++..+...+....+.++.++++.|.|++.+...
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 7799999999999999999888888888887 88899999999999999999988876678999999999999999999
Q ss_pred HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChH-HHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK-GASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
+.+.+..++.++.+.+++|.+.+.+...+...+.....+.++-+.++..... +...++.+......+.....+++...+
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGE 361 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchH
Confidence 9999999999999999999999999999999888888888888886654443 334444444444666677778888888
Q ss_pred hHHHHHHHHHhhCCC-ccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEcc
Q 007526 458 DGAKALSEVLKFHGN-INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLA 536 (600)
Q Consensus 458 ~~~~~l~~~l~~~~~-L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls 536 (600)
++...+......... +..+++..+.+.+.+...++..+..++.+.+++++.|...+++...+........ .++.++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~ 440 (478)
T KOG4308|consen 362 EGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLS 440 (478)
T ss_pred HHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhc
Confidence 877777665544333 7788888888888888888888899999999999999999998888888776654 89999999
Q ss_pred CCCCChhHHHHHHHHHHhCcccceeEEEccCCCCc
Q 007526 537 FNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571 (600)
Q Consensus 537 ~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~ 571 (600)
.|.++..+..........++. +..+-+.+|.+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 441 RNPITALGTEELQRALALNPG--ILAIRLRGNVIG 473 (478)
T ss_pred cChhhhcchHHHHHHHhcCCC--cceeecccCccc
Confidence 999999999989888887775 777777777654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-22 Score=213.79 Aligned_cols=354 Identities=19% Similarity=0.201 Sum_probs=208.1
Q ss_pred CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (600)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (600)
.-+|++|||++|++.+.+ ..+....+|+.|+++.|.|.. .+..+.++.+|++|+|.+|.+.. ++.
T Consensus 44 ~v~L~~l~lsnn~~~~fp-----~~it~l~~L~~ln~s~n~i~~-----vp~s~~~~~~l~~lnL~~n~l~~-----lP~ 108 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFP-----IQITLLSHLRQLNLSRNYIRS-----VPSSCSNMRNLQYLNLKNNRLQS-----LPA 108 (1081)
T ss_pred eeeeEEeeccccccccCC-----chhhhHHHHhhcccchhhHhh-----Cchhhhhhhcchhheeccchhhc-----Cch
Confidence 444889999999887743 333344688888888887642 23345567788888888887654 556
Q ss_pred HHhhCCCcCEEEeecCCCChHHHH--HHH-----HH--------HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCcc
Q 007526 241 ILVDNAGVERLQLSSVDLRDEGAK--AIA-----EL--------LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR 305 (600)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~--~l~-----~~--------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 305 (600)
.+..+.+|++|++++|++...... ... .+ ++. ..++.+++..|.+.+. +...+..+..
T Consensus 109 ~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~l~~n~l~~~----~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLDLRLNVLGGS----FLIDIYNLTH-- 181 (1081)
T ss_pred hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhhhhhhhcccc----hhcchhhhhe--
Confidence 666678888888888876642110 000 00 111 1244455555544321 1222212222
Q ss_pred EEEccCCCCChHHHHHHHH-------------HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCC
Q 007526 306 SLHLNGNYGGALGANALAK-------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (600)
Q Consensus 306 ~L~L~~n~l~~~~~~~l~~-------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~ 372 (600)
.|+|+.|.++......+.. .-...++|+.|+.+.|.++..... ....+|++++++.|.++
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-------p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-------PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-------cccccceeeecchhhhh
Confidence 3666666655222111100 000234566666666665532111 12237899999999888
Q ss_pred hhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC
Q 007526 373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452 (600)
Q Consensus 373 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 452 (600)
. +++++..|.+|+.++..+|+++. ++..+.....|+.|.+..|.+.. ++..+...+.|++|+|..
T Consensus 255 ~-----lp~wi~~~~nle~l~~n~N~l~~-----lp~ri~~~~~L~~l~~~~nel~y-----ip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 255 N-----LPEWIGACANLEALNANHNRLVA-----LPLRISRITSLVSLSAAYNELEY-----IPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred c-----chHHHHhcccceEecccchhHHh-----hHHHHhhhhhHHHHHhhhhhhhh-----CCCcccccceeeeeeehh
Confidence 8 78899999999999999998854 55555566778888877776543 444444457888888888
Q ss_pred CCCChhHHHHHHHHH---------------------hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526 453 NPIGADGAKALSEVL---------------------KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (600)
Q Consensus 453 n~i~~~~~~~l~~~l---------------------~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 511 (600)
|+|.......+...- ..++.|+.|.+.+|.+++..+..+... +.|+.|+|++|++
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~----~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF----KHLKVLHLSYNRL 395 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc----cceeeeeeccccc
Confidence 877655432221110 123345556666666666654443333 6677777777766
Q ss_pred ChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526 512 RDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574 (600)
Q Consensus 512 ~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 574 (600)
+......+... ..|++|+||||+++.. +..++.+.. |++|..-+|++..++
T Consensus 396 ~~fpas~~~kl-----e~LeeL~LSGNkL~~L-p~tva~~~~------L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 396 NSFPASKLRKL-----EELEELNLSGNKLTTL-PDTVANLGR------LHTLRAHSNQLLSFP 446 (1081)
T ss_pred ccCCHHHHhch-----HHhHHHhcccchhhhh-hHHHHhhhh------hHHHhhcCCceeech
Confidence 65555545444 5567777777766632 244544444 666666677666665
No 14
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.79 E-value=3.1e-19 Score=185.32 Aligned_cols=362 Identities=28% Similarity=0.373 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccC-CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC
Q 007526 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN 228 (600)
Q Consensus 150 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 228 (600)
..+.+...++.+++|..|++++|.+++.+...+.+.+... ..+++|++..|.++..+...+...+..+..++.++++.|
T Consensus 103 ~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 103 GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLN 182 (478)
T ss_pred hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhc
Confidence 4445555555566666666666666666666666665554 555566666666666666666666655556666666666
Q ss_pred CCChHHHHHHHHHHhh----CCCcCEEEeecCCCChHHHHHHHHHHhcCCC-ccEEeecCCCCChhhHHHHHHHHhhC-C
Q 007526 229 PIGDEGVKCLCDILVD----NAGVERLQLSSVDLRDEGAKAIAELLKNNSI-LRVLELNNNMIDYSGFTSLAEALLEN-S 302 (600)
Q Consensus 229 ~l~~~~~~~l~~~l~~----~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~-~ 302 (600)
.+...+...++..+.. ..++++|++++|.++...+..+...+...+. +..|++..|.+.|.++..+...+... .
T Consensus 183 ~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~ 262 (478)
T KOG4308|consen 183 GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSE 262 (478)
T ss_pred ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccch
Confidence 6655555555555553 4455666666666665555555555555444 55566666666555555555555554 4
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCCh-hhHHHHHH
Q 007526 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA-KGAFHVAE 381 (600)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~-~~~~~l~~ 381 (600)
.+++++++.|.+++.+...++..+..++.++.|.++.|.+++.+...+...+.... .+.++-+.+++... .....+..
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 341 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKT-PLLHLVLGGTGKGTRGGTSVLAE 341 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcc-cchhhhccccCccchhHHHHHHH
Confidence 55556666666555555555555555555555666555555555555555444322 34444444332222 22222222
Q ss_pred HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCC-ccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHH
Q 007526 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (600)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (600)
.......+.....+++...+++...+.......+. +..+++..+.+...+...++..+..++.++.++++.|...+++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~ 421 (478)
T KOG4308|consen 342 ADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGA 421 (478)
T ss_pred HHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhH
Confidence 22233333334444445555444444443333222 44555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 461 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
..+......+..++.++++.|.++..+...........+......+..|.++
T Consensus 422 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 422 EVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIG 473 (478)
T ss_pred HHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccc
Confidence 5554444444455555555555555555555555555555555555554443
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=2.4e-22 Score=192.51 Aligned_cols=355 Identities=21% Similarity=0.257 Sum_probs=210.3
Q ss_pred HHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHH-
Q 007526 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG- 234 (600)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~- 234 (600)
+=++.+..+++|++.+|.+.. ++.+++....++.++.++|++. .++..+....+|.+++.+.|.+..-.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls-----~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLS-----ELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred HhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHh-----hccHHHhhhhhhhhhhccccceeecCc
Confidence 334567777888887776654 3455555566666666666643 34444445555666666665543200
Q ss_pred -----------------HHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH
Q 007526 235 -----------------VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (600)
Q Consensus 235 -----------------~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (600)
...+++.+..+..+..+++.+|++.......++ ++.|++||...|.+ +.+++.
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-----m~~L~~ld~~~N~L-----~tlP~~ 201 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-----MKRLKHLDCNSNLL-----ETLPPE 201 (565)
T ss_pred hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-----HHHHHhcccchhhh-----hcCChh
Confidence 001233333344444455555544443222222 25577777777666 566777
Q ss_pred HhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHH
Q 007526 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (600)
Q Consensus 298 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~ 377 (600)
++.+.+|+.|++.+|++...+ .|.+|..|++|+++.|.+.- +........+.+..||+.+|++.+
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vLDLRdNklke---- 266 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVLDLRDNKLKE---- 266 (565)
T ss_pred hcchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccHHHh-----hHHHHhcccccceeeecccccccc----
Confidence 777777888888888765443 35677788888888887654 333333566689999999999988
Q ss_pred HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH-------HHHHHhh----------
Q 007526 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS-------AIARVLK---------- 440 (600)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------~l~~~l~---------- 440 (600)
+|..+..+++|..||+|+|.|+. ++..++++ +|+.|.+.||.+...... .+.+.+.
T Consensus 267 -~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 267 -VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred -CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 78888888999999999999887 67778777 899999999987543222 1111111
Q ss_pred --------------------cCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHH--HHHHHhhC
Q 007526 441 --------------------DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF--VADMLRYN 498 (600)
Q Consensus 441 --------------------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~--l~~~l~~~ 498 (600)
...+.+.|++++-++++...+.+..+ + -.-.+.+++++|++...+... +.++
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~-~~~Vt~VnfskNqL~elPk~L~~lkel---- 413 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-K-SEIVTSVNFSKNQLCELPKRLVELKEL---- 413 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-h-hcceEEEecccchHhhhhhhhHHHHHH----
Confidence 11234555555555555444444222 1 113556666666665443221 1111
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526 499 NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (600)
Q Consensus 499 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~ 573 (600)
.+.+++++|.++-.+. .+++. +.|..|++++|.+.+. +..+..... |+.||+++|.|...
T Consensus 414 --vT~l~lsnn~isfv~~-~l~~l-----~kLt~L~L~NN~Ln~L-P~e~~~lv~------Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 414 --VTDLVLSNNKISFVPL-ELSQL-----QKLTFLDLSNNLLNDL-PEEMGSLVR------LQTLNLSFNRFRML 473 (565)
T ss_pred --HHHHHhhcCccccchH-HHHhh-----hcceeeecccchhhhc-chhhhhhhh------hheecccccccccc
Confidence 3345556655554332 24443 6688888888777643 333444444 78888888876654
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=6.3e-21 Score=200.58 Aligned_cols=247 Identities=23% Similarity=0.236 Sum_probs=160.5
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 325 (600)
.+|+++++++|+++. ++..+..+.+|+.++..+|++ ..++..+....+|+.|.+..|.+. .++..
T Consensus 241 ~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l-----~~lp~ri~~~~~L~~l~~~~nel~-----yip~~ 305 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRL-----VALPLRISRITSLVSLSAAYNELE-----YIPPF 305 (1081)
T ss_pred ccceeeecchhhhhc-----chHHHHhcccceEecccchhH-----HhhHHHHhhhhhHHHHHhhhhhhh-----hCCCc
Confidence 456666666666555 344555556666666666666 445555555666666666666543 33344
Q ss_pred hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (600)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (600)
+.+.++|++|+|..|++.+.....+. .....+..|+.+.|.+...- .-.=...+.|+.|.+.+|.++|.
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~----v~~~~l~~ln~s~n~l~~lp----~~~e~~~~~Lq~LylanN~Ltd~--- 374 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLA----VLNASLNTLNVSSNKLSTLP----SYEENNHAALQELYLANNHLTDS--- 374 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHh----hhhHHHHHHhhhhccccccc----cccchhhHHHHHHHHhcCccccc---
Confidence 55677888888888877654332111 11113566666666555421 00012345688888999999987
Q ss_pred HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (600)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 485 (600)
....+-..++|+.|+|++|+++......+.++ +.|++|+||||+++. ++..+..+..|++|...+|++..
T Consensus 375 -c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 375 -CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred -chhhhccccceeeeeecccccccCCHHHHhch----HHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCceee
Confidence 44556667889999999998887665555555 889999999998865 44555667789999999888865
Q ss_pred hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526 486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (600)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~ 539 (600)
.+ .++. .+.|+.+|++.|+++....... .+. ++|++||++||.
T Consensus 445 fP--e~~~----l~qL~~lDlS~N~L~~~~l~~~---~p~--p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 445 FP--ELAQ----LPQLKVLDLSCNNLSEVTLPEA---LPS--PNLKYLDLSGNT 487 (1081)
T ss_pred ch--hhhh----cCcceEEecccchhhhhhhhhh---CCC--cccceeeccCCc
Confidence 43 3444 4899999999998887654332 221 789999999995
No 17
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.74 E-value=4.2e-17 Score=149.11 Aligned_cols=251 Identities=20% Similarity=0.231 Sum_probs=159.0
Q ss_pred HhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCC------HHHHHHHHHHHhcCCCcc
Q 007526 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT------AAGIKAFDGVLQSNIALK 221 (600)
Q Consensus 148 ~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~L~ 221 (600)
..+.+...+-+..+..+++++||||.|+.+.+..++..++.-.+|+..++++-..+ ...+.-+.+++.+||+|+
T Consensus 16 ~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 16 KEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred cchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 33444444555568899999999999999999999999999999999999875321 233556667778899999
Q ss_pred EEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhc---------CCCccEEeecCCCCChhhHH
Q 007526 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN---------NSILRVLELNNNMIDYSGFT 292 (600)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~---------~~~L~~L~L~~n~i~~~~~~ 292 (600)
.++||.|.++......+.+.+.+...|++|.+++|.+...+...++.++.. -|.|+......|++...
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng--- 172 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG--- 172 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC---
Confidence 999999999888888888998888999999999999888777777765432 23455555555544333
Q ss_pred HHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCC
Q 007526 293 SLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (600)
Q Consensus 293 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~ 372 (600)
+....+..+.....|+++.+..|.|..+|+..+...=.....+|+.|||.+|.++
T Consensus 173 -------------------------s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 173 -------------------------SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred -------------------------cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 3333333344444455555555555554444332211112234555555555555
Q ss_pred hhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhc--CCCccEEEccCCC
Q 007526 373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNN 426 (600)
Q Consensus 373 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~ 426 (600)
..+...++..++..+.|++|.+..|-++..|...+...+.. .++|..|-..+|.
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 55555555555555555555555555555555544444433 3444555544443
No 18
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.71 E-value=2.4e-16 Score=144.18 Aligned_cols=275 Identities=20% Similarity=0.243 Sum_probs=182.5
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC---h---HHHHHHHHHHhcCCCccEEeecCCCCChhh
Q 007526 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR---D---EGAKAIAELLKNNSILRVLELNNNMIDYSG 290 (600)
Q Consensus 217 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~---~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 290 (600)
+..+++++||+|.|+.+....++..+.+-.+|+..+++.-... + .....+...+..|+.|+..+|++|.++...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3445555555555555555555555544445555544433111 1 123345556667788888888888888777
Q ss_pred HHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCC
Q 007526 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370 (600)
Q Consensus 291 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 370 (600)
...+.+.+.+...|++|.|++|.++..+...+.+++..+- .|+ .. ...|.|+......|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--------~nK-------Ka-----a~kp~Le~vicgrNR 168 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--------YNK-------KA-----ADKPKLEVVICGRNR 168 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--------HHh-------hh-----ccCCCceEEEeccch
Confidence 7788888888888888888888887777666666554321 111 01 234578888888887
Q ss_pred CChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHH-HHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEE
Q 007526 371 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA-DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449 (600)
Q Consensus 371 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 449 (600)
+..-+.......+..-.+|+.+.+..|.|..+|+..+. ..+..+++|+.||+..|.++..+..+++.+++.-+.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 76655555566666667888888888988888776543 44566889999999999999999999999888888899999
Q ss_pred CcCCCCChhHHHHHHHHHh--hCCCccEEeccCcCCChhH-----HHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 450 LAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASG-----AEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 450 Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~-----~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
+..|-++..|...+.+.+. ..++|..|...+|.+.... ...+.+ ...|-|..|.+.||+|..
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~--~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQ--DAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhh--cccHHHHHHHHccCcchh
Confidence 9999888888887766654 3778888888888653221 111111 023455555566666654
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1.9e-17 Score=179.81 Aligned_cols=267 Identities=18% Similarity=0.183 Sum_probs=160.9
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (600)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (600)
..-..|+++++.++. ++..+. .+|+.|++.+|.++. ++. ..++|++|++++|+++.. +..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~LtsL-----P~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTSL-----PVL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccCcc-----cCc
Confidence 445678888887764 343332 478888888887763 221 136788888888877642 221
Q ss_pred HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (600)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 321 (600)
.++|++|++++|.++. ++.. ..+|+.|++++|+++. ++. ..++|+.|++++|.++..+.
T Consensus 261 ---p~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~~Lp~-- 319 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA-- 319 (788)
T ss_pred ---ccccceeeccCCchhh-----hhhc---hhhcCEEECcCCcccc-----ccc---cccccceeECCCCccccCCC--
Confidence 2577888888887664 2222 1457778888887742 222 23567888888877764321
Q ss_pred HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (600)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (600)
...+|+.|++++|.++.. .. ...+|+.|++++|.++. ++. ..++|+.|++++|.|+.
T Consensus 320 ------lp~~L~~L~Ls~N~L~~L-----P~----lp~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 320 ------LPSELCKLWAYNNQLTSL-----PT----LPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 376 (788)
T ss_pred ------CcccccccccccCccccc-----cc----cccccceEecCCCccCC-----CCC---CCcccceehhhcccccc
Confidence 123577777777776541 11 11267778887777775 332 12467777777777664
Q ss_pred HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (600)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 481 (600)
++.. ..+|+.|++++|.|+... .. .++|+.|++++|.|+... .+ ..+|+.|++++|
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~LP-----~l---~s~L~~LdLS~N~LssIP--~l------~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSLP-----VL---PSELKELMVSGNRLTSLP--ML------PSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCCC-----Cc---ccCCCEEEccCCcCCCCC--cc------hhhhhhhhhccC
Confidence 2221 246777777777776421 11 156777777777765431 11 125667777777
Q ss_pred CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHH
Q 007526 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521 (600)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 521 (600)
+|+..+ ..+..+++|+.|+|++|.+++..+..+..
T Consensus 433 qLt~LP-----~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 433 QLTRLP-----ESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred cccccC-----hHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 776432 22334477777777777777766555543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=3.1e-17 Score=178.20 Aligned_cols=276 Identities=16% Similarity=0.147 Sum_probs=195.6
Q ss_pred HHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC
Q 007526 180 FFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259 (600)
Q Consensus 180 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~ 259 (600)
..+..++. ..-..|+++++.++. ++..+. ++|+.|++++|+++. ++. ..++|++|++++|+++
T Consensus 193 ~r~~~Cl~--~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 193 QKMRACLN--NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred HHHHHHhc--CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccC
Confidence 33444443 456789999998863 333332 479999999999875 222 2478999999999988
Q ss_pred hHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccC
Q 007526 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339 (600)
Q Consensus 260 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 339 (600)
.. +.. .++|+.|++++|.++ .++. ....|+.|++++|.++..+. ..++|+.|++++
T Consensus 256 sL-----P~l---p~sL~~L~Ls~N~L~-----~Lp~---lp~~L~~L~Ls~N~Lt~LP~--------~p~~L~~LdLS~ 311 (788)
T PRK15387 256 SL-----PVL---PPGLLELSIFSNPLT-----HLPA---LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSD 311 (788)
T ss_pred cc-----cCc---ccccceeeccCCchh-----hhhh---chhhcCEEECcCCccccccc--------cccccceeECCC
Confidence 63 221 267999999999884 3443 23578899999998875432 246899999999
Q ss_pred CCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccE
Q 007526 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITT 419 (600)
Q Consensus 340 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~ 419 (600)
|+++... . ....|+.|++++|.++. ++. ...+|++|+|++|+|+. ++.. ..+|+.
T Consensus 312 N~L~~Lp-----~----lp~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~ 366 (788)
T PRK15387 312 NQLASLP-----A----LPSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS-----LPTL---PSELYK 366 (788)
T ss_pred CccccCC-----C----CcccccccccccCcccc-----ccc---cccccceEecCCCccCC-----CCCC---Ccccce
Confidence 9887521 1 12368899999998876 442 12479999999999886 3321 357889
Q ss_pred EEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCC
Q 007526 420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNN 499 (600)
Q Consensus 420 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~ 499 (600)
|++++|.|+.. +.. ..+|+.|++++|.|+.... ..++|+.|++++|.++..+. + ..
T Consensus 367 L~Ls~N~L~~L-----P~l---~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N~LssIP~--l------~~ 422 (788)
T PRK15387 367 LWAYNNRLTSL-----PAL---PSGLKELIVSGNRLTSLPV--------LPSELKELMVSGNRLTSLPM--L------PS 422 (788)
T ss_pred ehhhccccccC-----ccc---ccccceEEecCCcccCCCC--------cccCCCEEEccCCcCCCCCc--c------hh
Confidence 99999998752 222 2579999999998874321 12579999999999876532 1 14
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHH
Q 007526 500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551 (600)
Q Consensus 500 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~ 551 (600)
+|+.|++++|+|+.. +..+..+ +.|+.|+|++|++++..+..+...
T Consensus 423 ~L~~L~Ls~NqLt~L-P~sl~~L-----~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 423 GLLSLSVYRNQLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhhhccCccccc-ChHHhhc-----cCCCeEECCCCCCCchHHHHHHHH
Confidence 688899999999864 3334444 789999999999998777777544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=9.4e-16 Score=167.76 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.|+.|++++|.++. ++..+ .++|+.|++++|.++. ++..+ .++|+.|++++|+++.. +..+
T Consensus 305 sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~L~~L-----P~~l 365 (754)
T PRK15370 305 GITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKNQITVL-----PETL 365 (754)
T ss_pred hHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc-----CChhh--cCcccEEECCCCCCCcC-----Chhh
Confidence 45555555555543 22211 2355555555555543 22222 14555666665555431 1111
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
.+.|++|+|++|.++..... +. ..|+.|++++|++... +..+.......+++..|++.+|.++..
T Consensus 366 --p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~~ 430 (754)
T PRK15370 366 --PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFSER 430 (754)
T ss_pred --cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCccHH
Confidence 14556666666655432111 11 1355556666655533 222333333445566666666666543
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=3.4e-16 Score=182.78 Aligned_cols=342 Identities=15% Similarity=0.195 Sum_probs=187.5
Q ss_pred HHHhCCCccEEEcCCCCCCH--HHHHHHHHHhccC-CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007526 157 FAKELRAFSSVDMSGRNFGD--EGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 233 (600)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 233 (600)
.+..+++|+.|.+..+.... .....++..+..+ .+|+.|.+.++.+.. ++..+ ...+|++|++++|++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-
Confidence 34556666666665443211 0000112222222 356667666665432 22111 23578888888877653
Q ss_pred HHHHHHHHHhhCCCcCEEEeecCC-CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCC
Q 007526 234 GVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312 (600)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 312 (600)
+...+..+++|+.|+|+++. +.. ++. +..+++|++|+|++|... ..++..+..+++|+.|++++|
T Consensus 626 ----L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip~-ls~l~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 626 ----LWDGVHSLTGLRNIDLRGSKNLKE-----IPD-LSMATNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred ----cccccccCCCCCEEECCCCCCcCc-----CCc-cccCCcccEEEecCCCCc----cccchhhhccCCCCEEeCCCC
Confidence 34445566788888888764 332 111 344578888888877432 455667777888888888876
Q ss_pred C-CChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcE
Q 007526 313 Y-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391 (600)
Q Consensus 313 ~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 391 (600)
. ++..+ ..+ .+++|+.|++++|..... +. ....+|+.|++++|.+.. ++..+ .+++|++
T Consensus 692 ~~L~~Lp-----~~i-~l~sL~~L~Lsgc~~L~~----~p----~~~~nL~~L~L~~n~i~~-----lP~~~-~l~~L~~ 751 (1153)
T PLN03210 692 ENLEILP-----TGI-NLKSLYRLNLSGCSRLKS----FP----DISTNISWLDLDETAIEE-----FPSNL-RLENLDE 751 (1153)
T ss_pred CCcCccC-----CcC-CCCCCCEEeCCCCCCccc----cc----cccCCcCeeecCCCcccc-----ccccc-ccccccc
Confidence 4 33222 111 467788888888753211 11 122368888888887765 44333 4567777
Q ss_pred EEccCCCCChH--HHHHHH-HHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC-CChhHHHHHHHHH
Q 007526 392 INLYMNDIGDE--GAEKIA-DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVL 467 (600)
Q Consensus 392 L~Ls~n~l~~~--~~~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l 467 (600)
|++.++..... ....+. .....+++|+.|++++|..... ++..+.++++|+.|++++|. ++. ++..+
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~ 822 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI 822 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC
Confidence 77765432110 000000 0111246788888888754332 34445666888888888763 332 11111
Q ss_pred hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC-CCChhHHH
Q 007526 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN-EIRDDGAF 546 (600)
Q Consensus 468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n-~i~~~~~~ 546 (600)
.+++|++|++++|..-.. +... .++|++|+|++|.|+... ..+... ++|+.|++++| ++... +.
T Consensus 823 -~L~sL~~L~Ls~c~~L~~----~p~~---~~nL~~L~Ls~n~i~~iP-~si~~l-----~~L~~L~L~~C~~L~~l-~~ 887 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRT----FPDI---STNISDLNLSRTGIEEVP-WWIEKF-----SNLSFLDMNGCNNLQRV-SL 887 (1153)
T ss_pred -CccccCEEECCCCCcccc----cccc---ccccCEeECCCCCCccCh-HHHhcC-----CCCCEEECCCCCCcCcc-Cc
Confidence 356788888888743221 1111 257888888888777542 223332 67888888775 45532 22
Q ss_pred HHHHHHHhCcccceeEEEccCCC
Q 007526 547 AIAQALKANEDVAVTSLNLANNF 569 (600)
Q Consensus 547 ~l~~~~~~~~~~~L~~L~l~~n~ 569 (600)
.+..+. .|+.+++++|.
T Consensus 888 ~~~~L~------~L~~L~l~~C~ 904 (1153)
T PLN03210 888 NISKLK------HLETVDFSDCG 904 (1153)
T ss_pred cccccc------CCCeeecCCCc
Confidence 222221 27777777763
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=6.7e-16 Score=168.91 Aligned_cols=261 Identities=20% Similarity=0.231 Sum_probs=157.2
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH
Q 007526 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (600)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (600)
.+.+.|+++++.++.. +..+ .+.|+.|+|++|+++.. +..+. ++|++|++++|.++. ++..
T Consensus 178 ~~~~~L~L~~~~LtsL-----P~~I--p~~L~~L~Ls~N~LtsL-----P~~l~--~nL~~L~Ls~N~Lts-----LP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTI-----PACI--PEQITTLILDNNELKSL-----PENLQ--GNIKTLYANSNQLTS-----IPAT 238 (754)
T ss_pred cCceEEEeCCCCcCcC-----Cccc--ccCCcEEEecCCCCCcC-----Chhhc--cCCCEEECCCCcccc-----CChh
Confidence 3577888888777642 2221 15688888888887753 22222 578888888887752 3333
Q ss_pred HhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHH
Q 007526 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (600)
Q Consensus 298 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~ 377 (600)
+ ..+|+.|++++|.+...+. .+ ..+|+.|++++|+++. +...+ ..+|+.|++++|.++.
T Consensus 239 l--~~~L~~L~Ls~N~L~~LP~-----~l--~s~L~~L~Ls~N~L~~-----LP~~l---~~sL~~L~Ls~N~Lt~---- 297 (754)
T PRK15370 239 L--PDTIQEMELSINRITELPE-----RL--PSALQSLDLFHNKISC-----LPENL---PEELRYLSVYDNSIRT---- 297 (754)
T ss_pred h--hccccEEECcCCccCcCCh-----hH--hCCCCEEECcCCccCc-----ccccc---CCCCcEEECCCCcccc----
Confidence 2 2468888888887765432 11 1368888888887764 22212 1368888888887775
Q ss_pred HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
++..+. ++|++|++++|.++. ++..+ .++|+.|++++|.++.. +..+ .++|+.|++++|+|+.
T Consensus 298 -LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~L-----P~~l--~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 298 -LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTSL-----PASL--PPELQVLDVSKNQITV 360 (754)
T ss_pred -Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCccccC-----Chhh--cCcccEEECCCCCCCc
Confidence 333222 367778888887764 22222 25788888888877652 2222 2678888888887764
Q ss_pred hHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccC
Q 007526 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF 537 (600)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~ 537 (600)
.. ..+ .++|++|++++|.++..+.. +. ..|+.|++++|+++.. +..+...... .+.+..|++.+
T Consensus 361 LP-----~~l--p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~sl~~~~~~-~~~l~~L~L~~ 424 (754)
T PRK15370 361 LP-----ETL--PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PESLPHFRGE-GPQPTRIIVEY 424 (754)
T ss_pred CC-----hhh--cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-chhHHHHhhc-CCCccEEEeeC
Confidence 21 111 24788888888877755332 21 2477788888877643 2223222211 15677888888
Q ss_pred CCCChhHHHHHHHH
Q 007526 538 NEIRDDGAFAIAQA 551 (600)
Q Consensus 538 n~i~~~~~~~l~~~ 551 (600)
|.|.......+..+
T Consensus 425 Npls~~tl~~L~~L 438 (754)
T PRK15370 425 NPFSERTIQNMQRL 438 (754)
T ss_pred CCccHHHHHHHHHh
Confidence 88775544444333
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.61 E-value=2.1e-15 Score=146.26 Aligned_cols=256 Identities=20% Similarity=0.251 Sum_probs=144.5
Q ss_pred CCCcCEEEeecC-CCChHHHHHHHHHHhcCCCccEEeecCC-CCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 245 NAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (600)
Q Consensus 245 ~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 322 (600)
|+.|++|++..| .+++...+.++.. +++|++|+++.+ .|++.+++.+.. .+..++.+.+.||. +.+.+.+
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~--e~~le~l 260 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCL--ELELEAL 260 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHh---hhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhhcccc--cccHHHH
Confidence 444555555443 2444333323222 444555555544 344333343332 34445555555543 1122222
Q ss_pred HHHhhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCC-CC
Q 007526 323 AKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DI 399 (600)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 399 (600)
...=..+..+.++++..| .++++++..+..+.. +|+.|+.++| .+++..+.. .-.++.+|+.|-++.+ ++
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~----~lq~l~~s~~t~~~d~~l~a---Lg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH----ALQVLCYSSCTDITDEVLWA---LGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhh----HhhhhcccCCCCCchHHHHH---HhcCCCceEEEeccccchh
Confidence 222234455566665554 566666655554333 6777777775 344432222 2345677888877777 57
Q ss_pred ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEec
Q 007526 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKL 478 (600)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l 478 (600)
++.|+..+.. +++.|+.+++.++....++ .++..-.+|+.|+.|.++.| .|+|+|+..+...-.....|+.+.+
T Consensus 334 sd~~ft~l~r---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 334 SDRGFTMLGR---NCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred hhhhhhhhhc---CChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 7766554433 3577888888877655544 35555566788888888877 4777777777666566667777888
Q ss_pred cCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHH
Q 007526 479 GWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSF 523 (600)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l 523 (600)
++|..... ..-+.+..|++|+.+++.++ .++.++...+...+
T Consensus 409 ~n~p~i~d---~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 409 DNCPLITD---ATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred cCCCCchH---HHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88754332 22344556678888888777 67777766666554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=5.4e-17 Score=155.91 Aligned_cols=142 Identities=21% Similarity=0.276 Sum_probs=102.9
Q ss_pred HHHHHHHHHhCC-CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccC-C
Q 007526 151 KQTLNEFAKELR-AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-N 228 (600)
Q Consensus 151 ~~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n 228 (600)
.+++.++..++| ..++|+|..|.|+... ..+|+.+++|+.|||++|.|+..+.++|.+. ++|.+|-+.+ |
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP----~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIP----PGAFKTLHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNN 126 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCC----hhhccchhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCC
Confidence 334444444554 4779999999997754 4566778999999999999988877777654 5566666655 9
Q ss_pred CCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH-HHhhCCCccEE
Q 007526 229 PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSL 307 (600)
Q Consensus 229 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L 307 (600)
+|++..-..+.. +..|+.|.+.-|++.-.-...+.+ +++|..|.+.+|.+ +.++. .+..+..++.+
T Consensus 127 kI~~l~k~~F~g----L~slqrLllNan~i~Cir~~al~d----L~~l~lLslyDn~~-----q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 127 KITDLPKGAFGG----LSSLQRLLLNANHINCIRQDALRD----LPSLSLLSLYDNKI-----QSICKGTFQGLAAIKTL 193 (498)
T ss_pred chhhhhhhHhhh----HHHHHHHhcChhhhcchhHHHHHH----hhhcchhcccchhh-----hhhccccccchhccchH
Confidence 998865544443 488888989888877654444444 48899999999987 55665 55667888888
Q ss_pred EccCCC
Q 007526 308 HLNGNY 313 (600)
Q Consensus 308 ~L~~n~ 313 (600)
.+..|.
T Consensus 194 hlA~np 199 (498)
T KOG4237|consen 194 HLAQNP 199 (498)
T ss_pred hhhcCc
Confidence 887765
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.59 E-value=2e-15 Score=146.46 Aligned_cols=302 Identities=21% Similarity=0.271 Sum_probs=195.7
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCC-CChHHHHHHHHHHhcCCCccEEeecCC-CCChhhHHHHHH
Q 007526 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAE 296 (600)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~ 296 (600)
.|++|.+.++.= .+...+.....+++++++|.+.+|. +++.....++ ..+++|++|++..| .+|+..+..+++
T Consensus 139 ~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH---HhcchhhhhhhcccchhHHHHHHHHHH
Confidence 477777776531 2223355555667888888888774 6666554444 44788999999884 677766665554
Q ss_pred HHhhCCCccEEEccCCC-CChHHHHHHHHHhhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCC-CCCh
Q 007526 297 ALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISA 373 (600)
Q Consensus 297 ~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~ 373 (600)
.+++|++|+++.|. ++..+++.+.. +++.++.+.+.|| .+..+.+..+. .....+..+++..| .+++
T Consensus 214 ---gC~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~e~~le~l~~~~----~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 214 ---GCRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCLELELEALLKAA----AYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred ---hhhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhhcccccccHHHHHHHh----ccChHhhccchhhhccccc
Confidence 58889999998886 55556655443 5666777777776 33333333222 33335677776665 4666
Q ss_pred hhHHHHHHHHHhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECc
Q 007526 374 KGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLA 451 (600)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls 451 (600)
+++..+. ..+..|+.|+.+++ ++++..+..+ -.++++|+.|-+++|+ +++.+...++. +++.|+.+++.
T Consensus 284 ~~~~~i~---~~c~~lq~l~~s~~t~~~d~~l~aL---g~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e 354 (483)
T KOG4341|consen 284 EDLWLIA---CGCHALQVLCYSSCTDITDEVLWAL---GQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLE 354 (483)
T ss_pred hHHHHHh---hhhhHhhhhcccCCCCCchHHHHHH---hcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhccc
Confidence 6654443 45677888888776 6666532222 2347888888888884 66666554443 36888888888
Q ss_pred CCCCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCcc
Q 007526 452 YNPIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEA 529 (600)
Q Consensus 452 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~ 529 (600)
.+....++ .+...-.+|+.|+.|.+++| .|++.+...+...-.....|..+.|+++ .+++.....+... ++
T Consensus 355 ~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-----~~ 427 (483)
T KOG4341|consen 355 ECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-----RN 427 (483)
T ss_pred ccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC-----cc
Confidence 88554443 45555567888888888888 5777777777776666678888888888 4555555544443 67
Q ss_pred ccEEEccCC-CCChhHHHHHHHH
Q 007526 530 LTSIDLAFN-EIRDDGAFAIAQA 551 (600)
Q Consensus 530 L~~L~ls~n-~i~~~~~~~l~~~ 551 (600)
|+.+++-++ .++..++..+...
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhh
Confidence 888888777 4555555555443
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=1e-14 Score=170.40 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=160.8
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHH
Q 007526 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCD 240 (600)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 240 (600)
+.|+.|++.++.+.. ++..+ ...+|++|++.+|.+.. +...+..+++|+.|+|+++. +.. ++
T Consensus 589 ~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip- 651 (1153)
T PLN03210 589 PKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKE-----IP- 651 (1153)
T ss_pred cccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCc-----CC-
Confidence 458888888876654 23333 35788888888887652 33334567888888888754 332 22
Q ss_pred HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHH
Q 007526 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (600)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 320 (600)
.+..+++|+.|+|++|.... .++..+.++++|+.|++++|..- ..++..+ .+++|+.|++++|....
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L----~~Lp~~i-~l~sL~~L~Lsgc~~L~---- 718 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENL----EILPTGI-NLKSLYRLNLSGCSRLK---- 718 (1153)
T ss_pred ccccCCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCc----CccCCcC-CCCCCCEEeCCCCCCcc----
Confidence 23456888888888875332 24555666788888888876321 2233322 56788888888875321
Q ss_pred HHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChh--hHHHH-HHHHHhCCCCcEEEccCC
Q 007526 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK--GAFHV-AEYIKNCKSLLWINLYMN 397 (600)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~--~~~~l-~~~l~~~~~L~~L~Ls~n 397 (600)
.++. ...+|+.|++++|.+... +..+ ..++|++|++.++..... ....+ +......++|++|++++|
T Consensus 719 ~~p~---~~~nL~~L~L~~n~i~~l-----P~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 719 SFPD---ISTNISWLDLDETAIEEF-----PSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred cccc---ccCCcCeeecCCCccccc-----cccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 1111 235678888888776431 1111 123555555554321110 00000 001122345666666665
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEE
Q 007526 398 DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL 476 (600)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 476 (600)
..... ++..+..+++|+.|++++|. +.. ++..+ .+++|++|+|++|..-.. +.. ..++|+.|
T Consensus 789 ~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~-~L~sL~~L~Ls~c~~L~~----~p~---~~~nL~~L 851 (1153)
T PLN03210 789 PSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI-NLESLESLDLSGCSRLRT----FPD---ISTNISDL 851 (1153)
T ss_pred CCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC-CccccCEEECCCCCcccc----ccc---cccccCEe
Confidence 43222 44445556666666666553 222 11111 235666666666521110 111 12356666
Q ss_pred eccCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526 477 KLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (600)
Q Consensus 477 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~L~~L~ls~n 538 (600)
++++|.|+..+ ..+..+++|+.|++++| .+..... .+... +.|+.+++++|
T Consensus 852 ~Ls~n~i~~iP-----~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L-----~~L~~L~l~~C 903 (1153)
T PLN03210 852 NLSRTGIEEVP-----WWIEKFSNLSFLDMNGCNNLQRVSL-NISKL-----KHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCccCh-----HHHhcCCCCCEEECCCCCCcCccCc-ccccc-----cCCCeeecCCC
Confidence 66666655432 22334466666666654 3443211 11111 45556666655
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=2e-15 Score=145.19 Aligned_cols=282 Identities=22% Similarity=0.196 Sum_probs=166.3
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccC-CCCChHHHHHHHH
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG-NYGGALGANALAK 324 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~ 324 (600)
+.-.+++|..|+|+.....+|... ++|+.|||++|.|+.. -+++|..++.+.+|-+-+ |+|++....
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l----~~LRrLdLS~N~Is~I----~p~AF~GL~~l~~Lvlyg~NkI~~l~k~---- 134 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTL----HRLRRLDLSKNNISFI----APDAFKGLASLLSLVLYGNNKITDLPKG---- 134 (498)
T ss_pred CcceEEEeccCCcccCChhhccch----hhhceecccccchhhc----ChHhhhhhHhhhHHHhhcCCchhhhhhh----
Confidence 567889999999998766666555 8899999999998632 256677788888777766 888877763
Q ss_pred HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHH-HHHhCCCCcEEEccCCC-CChH
Q 007526 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMND-IGDE 402 (600)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-l~~~ 402 (600)
.|.++.+++.|.+.-|++.-.-.+.+ ...+++..|.+.+|.+.. ++. .+.....++.+.+..|. +.+-
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccccc
Confidence 44577788888888887765322222 233367778888877655 444 45667778888887775 3322
Q ss_pred HHHHHHHHhhc-------CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE--ECc-CCCCChhHHHHHHHHHhhCCC
Q 007526 403 GAEKIADALKQ-------NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL--DLA-YNPIGADGAKALSEVLKFHGN 472 (600)
Q Consensus 403 ~~~~l~~~l~~-------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L--~Ls-~n~i~~~~~~~l~~~l~~~~~ 472 (600)
.+..+.+.+.. ..-..-..+.+.++..+....+... ++.+ .++ .+.+.... -...++.+++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~------~esl~s~~~~~d~~d~~c---P~~cf~~L~~ 275 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS------LESLPSRLSSEDFPDSIC---PAKCFKKLPN 275 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh------HHhHHHhhccccCcCCcC---hHHHHhhccc
Confidence 22222221111 1111122223333333222222211 1111 111 11111111 1123456667
Q ss_pred ccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHH
Q 007526 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552 (600)
Q Consensus 473 L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~ 552 (600)
|++|++++|+|+.+...+|.++ ..+++|.|..|+|....-..|... ..|++|+|.+|+|+-..+.++..+.
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~~~~f~~l-----s~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVSSGMFQGL-----SGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred ceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHHHHhhhcc-----ccceeeeecCCeeEEEecccccccc
Confidence 7777777777777766666666 667777777777666544444443 6677777777777766666666555
Q ss_pred HhCcccceeEEEccCCCCchh
Q 007526 553 KANEDVAVTSLNLANNFLTKF 573 (600)
Q Consensus 553 ~~~~~~~L~~L~l~~n~l~~~ 573 (600)
. |.+|+|-.|++.-.
T Consensus 347 ~------l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 347 S------LSTLNLLSNPFNCN 361 (498)
T ss_pred e------eeeeehccCcccCc
Confidence 5 77777777665543
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-13 Score=126.81 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=127.5
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCC-CCChHHHHHHHHH
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARV 438 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~ 438 (600)
.|++|||++..|+...+. ..++.|.+|+.|.+.++++.|. +...++++.+|+.|++++| .++..+... +
T Consensus 186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~l---l 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQL---L 255 (419)
T ss_pred hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHH---H
Confidence 688888888888776443 3467888888888888888887 6667777888999998886 566655443 3
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHH
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAK 517 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 517 (600)
+.+|+.|..|+|+.|.+..+.+..+..-+ -++|+.|+++|+.- ..+...++.+.+.||+|.+|||++| .+++.-..
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 55688889999988877666555544333 35788888988831 1222356666777899999999888 66664444
Q ss_pred HHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCC
Q 007526 518 CLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568 (600)
Q Consensus 518 ~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n 568 (600)
.+.+. +-|++|.++.|..- .+..+... +...++++||+-++
T Consensus 333 ~~~kf-----~~L~~lSlsRCY~i--~p~~~~~l---~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EFFKF-----NYLQHLSLSRCYDI--IPETLLEL---NSKPSLVYLDVFGC 373 (419)
T ss_pred HHHhc-----chheeeehhhhcCC--ChHHeeee---ccCcceEEEEeccc
Confidence 44443 67889988888422 23322221 22224888888886
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-14 Score=141.29 Aligned_cols=237 Identities=17% Similarity=0.124 Sum_probs=159.9
Q ss_pred ccccHhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEE
Q 007526 144 GKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223 (600)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L 223 (600)
..++..+.+.+.+-=+++..|+++.|.++.+.+.+.. .....|++++.|||+.|-+.. |..+.++...+|+|+.|
T Consensus 103 K~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 103 KQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENL 177 (505)
T ss_pred ceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhc
Confidence 3455555566655556788899999999988876544 455668999999999998764 67778888889999999
Q ss_pred EccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC-CChhhHHHHHHHHhhCC
Q 007526 224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENS 302 (600)
Q Consensus 224 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~ 302 (600)
+|+.|++....-..... ..++|+.|.|+.|+++.. .+...+..+|+|+.|+|.+|. +.. . ......+.
T Consensus 178 Nls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~---~--~~~~~i~~ 246 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILI---K--ATSTKILQ 246 (505)
T ss_pred ccccccccCCccccchh---hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccce---e--cchhhhhh
Confidence 99999865321111111 248899999999999854 455556678999999999984 321 1 11223467
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHH-HhhhcCCCcccEEECcCCCCChhhHHHHHH
Q 007526 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (600)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 381 (600)
.|++|+|++|.+.+.... .....++.|+.|+++.+.+.+....... .......++|++|++..|+|.+-. ...
T Consensus 247 ~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~---sl~ 320 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR---SLN 320 (505)
T ss_pred HHhhccccCCcccccccc---cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc---ccc
Confidence 899999999987554322 3455788899999998887653221110 001123457888888888875510 113
Q ss_pred HHHhCCCCcEEEccCCCCChH
Q 007526 382 YIKNCKSLLWINLYMNDIGDE 402 (600)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~ 402 (600)
.+..+++|++|.+..|.++.+
T Consensus 321 ~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 321 HLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhccchhhhhhccccccccc
Confidence 455667777777777776653
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-12 Score=119.03 Aligned_cols=245 Identities=18% Similarity=0.224 Sum_probs=166.1
Q ss_pred cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh-CCCccEEEccCCCCChHHHHHHHHHh
Q 007526 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGL 326 (600)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l 326 (600)
=+.+++.+-.|.... +...+. .....+.+....+.+..+ ++.+.- -..|++|||+...++..... ..+
T Consensus 138 W~~lDl~~r~i~p~~---l~~l~~--rgV~v~Rlar~~~~~prl---ae~~~~frsRlq~lDLS~s~it~stl~---~iL 206 (419)
T KOG2120|consen 138 WQTLDLTGRNIHPDV---LGRLLS--RGVIVFRLARSFMDQPRL---AEHFSPFRSRLQHLDLSNSVITVSTLH---GIL 206 (419)
T ss_pred eeeeccCCCccChhH---HHHHHh--CCeEEEEcchhhhcCchh---hhhhhhhhhhhHHhhcchhheeHHHHH---HHH
Confidence 467888887777654 333333 567777777666655333 333222 24699999999888765544 456
Q ss_pred hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (600)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (600)
..|..|+.|.+.++.+.+..+..++ ...+|+.|+++.| +++..++.-+ +.+|+.|.+|+|+.|.+..+.+.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iA-----kN~~L~~lnlsm~sG~t~n~~~ll---~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIA-----KNSNLVRLNLSMCSGFTENALQLL---LSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHh-----ccccceeeccccccccchhHHHHH---HHhhhhHhhcCchHhhccchhhh
Confidence 6889999999999999987555553 3348999999986 6887765544 68899999999999988776655
Q ss_pred HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEeccCcC-C
Q 007526 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-I 483 (600)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i 483 (600)
.+...++ ++|+.|+++|++-. .+...+..+...||+|.+|||+.| .++++.+. .+.+.+.|++|.++.|. |
T Consensus 279 v~V~his--e~l~~LNlsG~rrn-l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~----~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 279 VAVAHIS--ETLTQLNLSGYRRN-LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HHHhhhc--hhhhhhhhhhhHhh-hhhhHHHHHHHhCCceeeeccccccccCchHHH----HHHhcchheeeehhhhcCC
Confidence 5554443 68999999998421 122346666777999999999987 56664333 33456789999999995 3
Q ss_pred ChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHH
Q 007526 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 523 (600)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 523 (600)
....... +...|.|.+||+.++ +.|.....+.+++
T Consensus 352 ~p~~~~~----l~s~psl~yLdv~g~-vsdt~mel~~e~~ 386 (419)
T KOG2120|consen 352 IPETLLE----LNSKPSLVYLDVFGC-VSDTTMELLKEML 386 (419)
T ss_pred ChHHeee----eccCcceEEEEeccc-cCchHHHHHHHhC
Confidence 3222222 234588999998875 3343445455553
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.5e-14 Score=137.91 Aligned_cols=242 Identities=19% Similarity=0.158 Sum_probs=144.9
Q ss_pred EEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhC
Q 007526 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN 245 (600)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 245 (600)
.+.+++..++-.|+..++.-=++.++|+++.|.++.+...+.. +....|++++.||||+|-+.. +..++.....+
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqL 171 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQL 171 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhc
Confidence 3445555666667777777666788999999999987765554 345668899999999998754 45566777778
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCC-CChHHHHHHHH
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAK 324 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~ 324 (600)
++|+.|+|+.|++..-.-..... .+++|+.|.|+.|.++...+..+ +..+++|+.|+|..|. +.. +..
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~---~~~fPsl~~L~L~~N~~~~~---~~~-- 240 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWI---LLTFPSLEVLYLEANEIILI---KAT-- 240 (505)
T ss_pred ccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHH---HHhCCcHHHhhhhcccccce---ecc--
Confidence 99999999988754321111111 23667888888888876544443 3457788888887774 211 111
Q ss_pred HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH--HHHHHHhCCCCcEEEccCCCCChH
Q 007526 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH--VAEYIKNCKSLLWINLYMNDIGDE 402 (600)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~--l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (600)
...-+..|++|+|++|++-+....... ...+.|+.|+++.|.+.+..... ..+....+++|++|++..|+|.+.
T Consensus 241 ~~~i~~~L~~LdLs~N~li~~~~~~~~----~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 241 STKILQTLQELDLSNNNLIDFDQGYKV----GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred hhhhhhHHhhccccCCccccccccccc----ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 111235677777777766543321221 23346777777777666521100 011134456677777777766542
Q ss_pred HHHHHHHHhhcCCCccEEEccCCCCChH
Q 007526 403 GAEKIADALKQNRTITTIDLGGNNIHSK 430 (600)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (600)
. ....+..+++|+.|.+..|.++.+
T Consensus 317 ~---sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 317 R---SLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred c---ccchhhccchhhhhhccccccccc
Confidence 1 112233345666666666655443
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=9.7e-14 Score=118.74 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=111.7
Q ss_pred CCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHH
Q 007526 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (600)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 324 (600)
+.+++.|-|++|+++.. +..+..+.+|+.|++.+|+| +.++..+..+++|+.|+++-|.+. .++.
T Consensus 32 ~s~ITrLtLSHNKl~~v-----ppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~-----~lpr 96 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV-----PPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLN-----ILPR 96 (264)
T ss_pred hhhhhhhhcccCceeec-----CCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhh-----cCcc
Confidence 35566666677766542 22233336777777777777 566777777778888877766553 3446
Q ss_pred HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHH
Q 007526 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (600)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (600)
.|+.+|.|+.||+.+|++....+..-+-.+ ..|+.|+|++|.+.- ++..++++++|+.|.+..|++-.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m----~tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~--- 164 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYM----TTLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLS--- 164 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHH----HHHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhh---
Confidence 677888888888888887654332222222 268888999988766 77888999999999999997765
Q ss_pred HHHHHHhhcCCCccEEEccCCCCChH
Q 007526 405 EKIADALKQNRTITTIDLGGNNIHSK 430 (600)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (600)
++..+..+.+|++|++.+|+++-.
T Consensus 165 --lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 165 --LPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred --CcHHHHHHHHHHHHhcccceeeec
Confidence 667777788999999999988753
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.06 E-value=4.3e-13 Score=114.81 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=116.4
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (600)
.+.+++.|.||+|.++. ++.-+..+.+|+.|++++|+|+ .++..+++++.|+.|++.-|++.. ++
T Consensus 31 ~~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~-----lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNI-----LP 95 (264)
T ss_pred chhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhc-----Cc
Confidence 45667888888888765 4555666789999999998875 455666778889999998887653 66
Q ss_pred HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (600)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 319 (600)
.+++..+.|+.|+|++|++.+.. ++..+-.+..|+.|++++|.+ +.++..++++++|+.|.+..|.+-
T Consensus 96 rgfgs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndf-----e~lp~dvg~lt~lqil~lrdndll---- 163 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDF-----EILPPDVGKLTNLQILSLRDNDLL---- 163 (264)
T ss_pred cccCCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCc-----ccCChhhhhhcceeEEeeccCchh----
Confidence 77778888999999988877643 222222336688888888887 667777888888999988888753
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCCc
Q 007526 320 NALAKGLEGNKSLRELHLHGNSIGD 344 (600)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~ 344 (600)
.+++.++.+..|++|++.+|+++-
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceeee
Confidence 334555667778888888887653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=2.6e-10 Score=106.54 Aligned_cols=162 Identities=21% Similarity=0.183 Sum_probs=110.9
Q ss_pred hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH
Q 007526 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (600)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (600)
..+.|+++|||+|.|+. +.+.++-.+.++.|++++|.|...+- ++ ..++|+.|||++|.++...- +-
T Consensus 282 TWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n--La----~L~~L~~LDLS~N~Ls~~~G--wh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN--LA----ELPQLQLLDLSGNLLAECVG--WH 348 (490)
T ss_pred hHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh--hh----hcccceEeecccchhHhhhh--hH
Confidence 34578999999998876 55666667899999999999987543 33 34999999999997754321 11
Q ss_pred HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH-HHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE-GAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (600)
Q Consensus 465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~n~~L~~L~ls~n~i~~~ 543 (600)
..+.++++|.+++|.|.+. ..+.++-+|..||+++|+|... .+..+... +-|+++.|.+|.+.+.
T Consensus 349 ---~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 349 ---LKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGS 414 (490)
T ss_pred ---hhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCcccc
Confidence 2356999999999988654 3345558899999999998864 34445444 7799999999988742
Q ss_pred H---HHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526 544 G---AFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578 (600)
Q Consensus 544 ~---~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 578 (600)
. ...++..-. .-.++.|.+-.=.....++.
T Consensus 415 vdYRTKVLa~FGE-----RaSE~~LD~~~~~~~ELDTV 447 (490)
T KOG1259|consen 415 VDYRTKVLARFGE-----RASEISLDNEPGNQQELDTV 447 (490)
T ss_pred chHHHHHHHHHhh-----hhhheecCCCCcchhhhhHH
Confidence 2 222222222 24566676654444333333
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=8e-11 Score=109.86 Aligned_cols=128 Identities=24% Similarity=0.202 Sum_probs=71.0
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.|++|||++|.|+. +-+...-.|.++.|++|.|.|... +.+..+++|..||+++|.++... .+=
T Consensus 285 ~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~~~-----Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAECV-----GWH 348 (490)
T ss_pred hhhhccccccchhh-----hhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHhhh-----hhH
Confidence 46666666666655 555555666666666666666542 12445566666666666655421 111
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
...-+++.|.|++|.|.+. ..+..+-+|..||+++|+|...... ..+.++|.|+.+.|.+|.+.
T Consensus 349 ~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV---~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEV---NHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHh---cccccccHHHHHhhcCCCcc
Confidence 1225566666666655332 2223344666667776666443221 23344477777777777554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=2e-10 Score=102.96 Aligned_cols=107 Identities=31% Similarity=0.403 Sum_probs=23.0
Q ss_pred CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH
Q 007526 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (600)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (600)
..+++|+|.+|.|+. ++.+. ....+|+.|++++|.|+. + +.+..+++|++|++++|.|++. .+
T Consensus 19 ~~~~~L~L~~n~I~~--Ie~L~----~~l~~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i-----~~ 81 (175)
T PF14580_consen 19 VKLRELNLRGNQIST--IENLG----ATLDKLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSI-----SE 81 (175)
T ss_dssp -------------------S------TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S------CH
T ss_pred ccccccccccccccc--ccchh----hhhcCCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCcc-----cc
Confidence 345666666665543 11121 122245555555555554 2 1234455555555555555542 11
Q ss_pred Hh-hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526 410 AL-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (600)
Q Consensus 410 ~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (600)
.+ ..+++|++|++++|+|.+... + ..+..+++|++|+|.+|+++
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGG
T ss_pred chHHhCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCccc
Confidence 11 123455555555555433211 1 12233355555555555444
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=1.5e-10 Score=103.77 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=38.4
Q ss_pred cccEEECcCCCCChhhHHHHHHHHH-hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
.+++|+|.+|.|+. + +.+. .+.+|+.|++++|.|... +.+..++.|++|++++|+|++.+. .+.
T Consensus 20 ~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~-~l~-- 84 (175)
T PF14580_consen 20 KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISE-GLD-- 84 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH-HHH--
T ss_pred cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcccc-chH--
Confidence 46666666666655 2 2233 355666666666666652 234445666666666666665321 111
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (600)
..+++|++|++++|+|.+... + ..+..+++|+.|++.+|.+++. ...-...+..+|+|+.||-.
T Consensus 85 -~~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 -KNLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -HH-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred -HhCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 123666666666666654321 1 2234556666666666666543 22233344455666666654
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.5e-08 Score=105.90 Aligned_cols=151 Identities=29% Similarity=0.352 Sum_probs=81.1
Q ss_pred CccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhh
Q 007526 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (600)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 354 (600)
+|+.|++++|.+ ..++..+..++.|+.|++++|.+++.+. .....+.|+.|++++|++.+.....
T Consensus 141 nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----~~~~~~~L~~L~ls~N~i~~l~~~~----- 205 (394)
T COG4886 141 NLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLPK-----LLSNLSNLNNLDLSGNKISDLPPEI----- 205 (394)
T ss_pred hcccccccccch-----hhhhhhhhccccccccccCCchhhhhhh-----hhhhhhhhhheeccCCccccCchhh-----
Confidence 455555555555 2333344455556666666655544332 1113455666666666655422110
Q ss_pred hcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHH
Q 007526 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (600)
Q Consensus 355 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (600)
.....|++|++++|.+.. ....+.+++++..+.+.+|++.+ +...+..++.+++|++++|.+++...
T Consensus 206 -~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~-- 272 (394)
T COG4886 206 -ELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISSISS-- 272 (394)
T ss_pred -hhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeee-----ccchhccccccceecccccccccccc--
Confidence 011146677777664322 33445666666666666666554 23344555667777777777766432
Q ss_pred HHHHhhcCCCcCEEECcCCCCCh
Q 007526 435 IARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
+....+|+.|++++|.+..
T Consensus 273 ----~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 273 ----LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ----ccccCccCEEeccCccccc
Confidence 3333677777777775543
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.5e-08 Score=105.70 Aligned_cols=196 Identities=26% Similarity=0.308 Sum_probs=106.3
Q ss_pred cEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCCchHHHHHHHhhh
Q 007526 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLS 355 (600)
Q Consensus 277 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~ 355 (600)
..+++..+.+... ...+.....++.|++.+|.+++... ..... ++|+.|++++|.+.... ..+
T Consensus 96 ~~l~~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~~l~-----~~~- 159 (394)
T COG4886 96 PSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIESLP-----SPL- 159 (394)
T ss_pred ceeeccccccccC-----chhhhcccceeEEecCCcccccCcc-----ccccchhhcccccccccchhhhh-----hhh-
Confidence 3567777765211 1222334677777777777665432 12223 26777777777765421 111
Q ss_pred cCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHH
Q 007526 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (600)
Q Consensus 356 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 435 (600)
...++|+.|++++|.+.+ ++......+.|+.|++++|++.+ ++..+.....|++|.+++|.+.. .
T Consensus 160 ~~l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~ 224 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----L 224 (394)
T ss_pred hccccccccccCCchhhh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----c
Confidence 233467777777777666 44444466677777777776665 33322233456677777664211 1
Q ss_pred HHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
...+....++..+.+.+|++.+. ...+...+++++|++++|++++... +....+++.|++++|.+...
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred chhhhhcccccccccCCceeeec-----cchhccccccceecccccccccccc------ccccCccCEEeccCcccccc
Confidence 12233346666666666655431 1233444556666666666665533 22336666666666655543
No 41
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.65 E-value=2.3e-07 Score=99.72 Aligned_cols=251 Identities=24% Similarity=0.290 Sum_probs=110.7
Q ss_pred CCCcCEEEeecC-CCChHHHHHHHHHHhcCCCccEEeecCC--CCChhhHHHHHHHHhhCCCccEEEccCCC-CChHHHH
Q 007526 245 NAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN--MIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGAN 320 (600)
Q Consensus 245 ~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~ 320 (600)
++.|+.|.+.++ .+++.+ +......++.|+.|+++++ .++..+... ......+.+|+.|+++++. +++.+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLL-LLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHh-hhhhhhcCCcCccchhhhhccCchhHH
Confidence 466666666665 344433 3333444566666666652 222111111 1122234555555555555 5555544
Q ss_pred HHHHHhhcCCCCCEEEccCCC-CCchHHHHHHHhhhcCCCcccEEECcCCCC-ChhhHHHHHHHHHhCCCCcEEEccCCC
Q 007526 321 ALAKGLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSI-SAKGAFHVAEYIKNCKSLLWINLYMND 398 (600)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (600)
.++. .|++|++|.+.++. +++.++..+...+. .|++|+++.|.. ++.++..+ ..++++++.|.+....
T Consensus 263 ~l~~---~c~~L~~L~l~~c~~lt~~gl~~i~~~~~----~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 263 ALAS---RCPNLETLSLSNCSNLTDEGLVSIAERCP----SLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSLN 332 (482)
T ss_pred HHHh---hCCCcceEccCCCCccchhHHHHHHHhcC----cccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhcC
Confidence 4443 25555555555554 45555555543332 455555555432 22222222 2334444444332221
Q ss_pred CChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEec
Q 007526 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (600)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l 478 (600)
- +..++.+.+.++..... .......+..|++|+.+.+.++.+++.+. ...+..|++|
T Consensus 333 ~--------------c~~l~~~~l~~~~~~~~-d~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~l~gc~~l----- 389 (482)
T KOG1947|consen 333 G--------------CPSLTDLSLSGLLTLTS-DDLAELILRSCPKLTDLSLSYCGISDLGL---ELSLRGCPNL----- 389 (482)
T ss_pred C--------------CccHHHHHHHHhhccCc-hhHhHHHHhcCCCcchhhhhhhhccCcch---HHHhcCCccc-----
Confidence 0 12222222222211100 00111223445777777776665444332 1112233333
Q ss_pred cCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC-CCChhHH
Q 007526 479 GWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN-EIRDDGA 545 (600)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~L~~L~ls~n-~i~~~~~ 545 (600)
+ ... ......+..++.|+++.+ .+++..+......+ ..++.+++.++ .+.....
T Consensus 390 -----~-~~l---~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 390 -----T-ESL---ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSC----SNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred -----c-hHH---HHHhccCCccceEecccCccccccchHHHhhhh----hccccCCccCcccccchhh
Confidence 1 111 111112233778888777 46666655554421 55777777777 3443333
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=4.9e-09 Score=109.06 Aligned_cols=127 Identities=19% Similarity=0.134 Sum_probs=61.6
Q ss_pred CcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHh
Q 007526 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (600)
Q Consensus 389 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (600)
|...+.++|.+.- +-.++.-++.|+.|||++|++++.. .++.|+.|++|||++|.+.... .+.. .
T Consensus 166 L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp--~l~~--~ 230 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVP--QLSM--V 230 (1096)
T ss_pred HhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhcccc--ccch--h
Confidence 4444445554432 2233333455566666666665532 2333466666666666543321 1111 1
Q ss_pred hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 469 ~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
.| .|+.|++++|.++.. .. +.++.+|+.||+++|.|.+..-..+.-.+ ..|+.|+|.||.+-
T Consensus 231 gc-~L~~L~lrnN~l~tL--~g----ie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 231 GC-KLQLLNLRNNALTTL--RG----IENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLC 292 (1096)
T ss_pred hh-hheeeeecccHHHhh--hh----HHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCccc
Confidence 12 466666666665443 12 23336677777777655543211111111 34666777777664
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=1.9e-09 Score=112.83 Aligned_cols=247 Identities=24% Similarity=0.260 Sum_probs=130.5
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (600)
.+..++.++++.+.+.. +...+..+++|+.|++.+|.|.. +...+..+++|++|++++|.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i------ 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKL------ 133 (414)
T ss_pred HhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhh-----cccchhhhhcchheeccccccccc------
Confidence 34445555566665554 23445556788888888887642 222245567788888888887664
Q ss_pred HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (600)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 319 (600)
..+..++.|+.|++++|.|+... .+..++.|+.+++++|.+++..-. . +..+.+++.+.+.+|.+.....
T Consensus 134 ~~l~~l~~L~~L~l~~N~i~~~~------~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNLISDIS------GLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred cchhhccchhhheeccCcchhcc------CCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc
Confidence 33344466888888888776631 122246777788888877532111 1 3456777777777776654322
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCC--cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG--KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (600)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~--~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (600)
+..+..+..+++..|.++... .+ .... .|+.+++++|.+.. +...+..++.+..|++..|
T Consensus 204 ------~~~~~~l~~~~l~~n~i~~~~--~l-----~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 204 ------LDLLKKLVLLSLLDNKISKLE--GL-----NELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ------hHHHHHHHHhhcccccceecc--Cc-----ccchhHHHHHHhcccCcccc-----ccccccccccccccchhhc
Confidence 112233344456666554310 00 0000 26666677766655 2234455666666666666
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (600)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (600)
.+... ..+.....+..+....+.+.......-.......++++.+.+.+|.+.
T Consensus 266 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 266 RISNL------EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred ccccc------ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 65542 112223444444555554442211111111223355666666666543
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=6.9e-08 Score=90.56 Aligned_cols=111 Identities=27% Similarity=0.317 Sum_probs=61.1
Q ss_pred CccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHH
Q 007526 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (600)
Q Consensus 191 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l 270 (600)
-++-|.+.++.|..+|.....+ ..++.++++||.+|+|++. ..++..+.+++.|+.|+|+.|.+... ++.++
T Consensus 46 a~ellvln~~~id~~gd~~~~~--~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~-I~~lp--- 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFG--SSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSD-IKSLP--- 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHH--HHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCc-cccCc---
Confidence 4445666666666554433222 3346677777777777653 44556666677777777777766542 11111
Q ss_pred hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCC
Q 007526 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312 (600)
Q Consensus 271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 312 (600)
....+|+.|-|.+..+.. ......+..++.+++|+++.|
T Consensus 118 ~p~~nl~~lVLNgT~L~w---~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSW---TQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccccceEEEEEcCCCCCh---hhhhhhhhcchhhhhhhhccc
Confidence 123566666666665543 222333334555555555555
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=2.6e-09 Score=111.74 Aligned_cols=129 Identities=26% Similarity=0.266 Sum_probs=69.0
Q ss_pred CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (600)
Q Consensus 189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (600)
+..++.+++..|.+.. +...+..+.+|+.|++.+|+|... ...+..+++|++|++++|.|++. .
T Consensus 71 l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i------~ 134 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKL------E 134 (414)
T ss_pred hHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----ccchhhhhcchheeccccccccc------c
Confidence 3566666666666542 223344556677777777776542 22144456777777777766653 1
Q ss_pred HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007526 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (600)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 343 (600)
.+..++.|+.|++++|.|++ ...+..+..|+.+++++|.+...... . +..+.+++.+.+.+|.+.
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~------~~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISD------ISGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhccchhhheeccCcchh------ccCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchh
Confidence 12223556667777776643 11222355666666666665443321 0 234455556666665544
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.54 E-value=1.4e-06 Score=93.57 Aligned_cols=235 Identities=23% Similarity=0.278 Sum_probs=137.0
Q ss_pred hCCCccEEEccCCC-CChHHHHHHHHHhhcCCCCCEEEccCC--CCCchHHHHHHHhhhcCCCcccEEECcCCC-CChhh
Q 007526 300 ENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN--SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKG 375 (600)
Q Consensus 300 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~ 375 (600)
.++.|+.|.+.++. +++.+ +......++.|++|+++++ .+...+..... +.....+|+.|+++.+. +++.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchh
Confidence 47899999998884 55444 3344557889999999873 22222211111 22333588999999987 88876
Q ss_pred HHHHHHHHHhCCCCcEEEccCCC-CChHHHHHHHHHhhcCCCccEEEccCCCC-ChHHHHHHHHHhhcCCCcCEEECcCC
Q 007526 376 AFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGGNNI-HSKGASAIARVLKDNSVITSLDLAYN 453 (600)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (600)
+..+. ..|++|++|.+.++. +++.|+..+... ++.|++|++++|.. ++.+...+ ..+|++|+.|.+...
T Consensus 261 l~~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~~---~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 261 LSALA---SRCPNLETLSLSNCSNLTDEGLVSIAER---CPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHH---hhCCCcceEccCCCCccchhHHHHHHHh---cCcccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhc
Confidence 66555 338899999988886 888887766553 67799999998854 34444444 444777777665443
Q ss_pred C----CChhHHHHH---------HHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHH
Q 007526 454 P----IGADGAKAL---------SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCL 519 (600)
Q Consensus 454 ~----i~~~~~~~l---------~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 519 (600)
. +++.+...+ .-.+..+++++.+.+.++.+.+.+. .+.+.+| .++ .+....
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~~~l~gc~~l~-~~l~~~ 396 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--------------ELSLRGCPNLT-ESLELR 396 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------------HHHhcCCcccc-hHHHHH
Confidence 2 333322111 1112334455555555444333221 2333333 233 222222
Q ss_pred HHHHhhcCccccEEEccCC-CCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526 520 AQSFKVVNEALTSIDLAFN-EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n-~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 572 (600)
... ...++.|+++.+ ..++......... +. .++.+++.++....
T Consensus 397 ~~~----~~~l~~L~l~~~~~~t~~~l~~~~~~---~~--~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 397 LCR----SDSLRVLNLSDCRLVTDKGLRCLADS---CS--NLKDLDLSGCRVIT 441 (482)
T ss_pred hcc----CCccceEecccCccccccchHHHhhh---hh--ccccCCccCccccc
Confidence 221 123899999988 4666666655543 11 27888888875444
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.8e-08 Score=105.01 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=68.8
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.++.|||+.|++++. +.+..|++|++|||++|.+... +..-..-..|..|.+.+|.++.. ..+.+
T Consensus 188 ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~v-----p~l~~~gc~L~~L~lrnN~l~tL--~gie~-- 252 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHV-----PQLSMVGCKLQLLNLRNNALTTL--RGIEN-- 252 (1096)
T ss_pred Hhhhhccchhhhhhh------HHHHhcccccccccccchhccc-----cccchhhhhheeeeecccHHHhh--hhHHh--
Confidence 577777777777663 2566777777777777766541 11000012367777777766542 12223
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh--HHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS--GAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
+++|+.||+++|-|.+..--... ..+..|+.|++.||.+--- .-.+.+..+..+.-=..+-|.+-.|+.
T Consensus 253 --LksL~~LDlsyNll~~hseL~pL---wsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~ 323 (1096)
T KOG1859|consen 253 --LKSLYGLDLSYNLLSEHSELEPL---WSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGG 323 (1096)
T ss_pred --hhhhhccchhHhhhhcchhhhHH---HHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccc
Confidence 36677777777765443221111 1122566777777755222 122233333333233345555554443
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.50 E-value=8.2e-07 Score=97.17 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=18.9
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCC
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n 284 (600)
-++...++.+..+..... .++.... |+.|.|.+-
T Consensus 60 f~ltki~l~~~~~~~~~~----~~l~~~~-L~sl~LGnl 93 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTL----EMLRKQD-LESLKLGNL 93 (699)
T ss_pred heeEEeeccceecchhHH----HHHhhcc-ccccCCcch
Confidence 556777777666655433 2233223 777776654
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.46 E-value=1.3e-06 Score=95.71 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=47.3
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHH
Q 007526 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 408 (600)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 408 (600)
+|+|+.|.+++-.+..+.+..++. ..|+|..||+|+++++. + ..++.+++|+.|.+.+=.+... ..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~----sFpNL~sLDIS~TnI~n-----l-~GIS~LknLq~L~mrnLe~e~~--~~l- 213 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCA----SFPNLRSLDISGTNISN-----L-SGISRLKNLQVLSMRNLEFESY--QDL- 213 (699)
T ss_pred CcccceEEecCceecchhHHHHhh----ccCccceeecCCCCccC-----c-HHHhccccHHHHhccCCCCCch--hhH-
Confidence 444555555444443333333332 22245555555555444 1 2344455555554444333321 001
Q ss_pred HHhhcCCCccEEEccCCCCChHH--HHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526 409 DALKQNRTITTIDLGGNNIHSKG--ASAIARVLKDNSVITSLDLAYNPIGAD 458 (600)
Q Consensus 409 ~~l~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (600)
..+..+++|+.||+|........ +....+.-..+|+|+.||.|++.++.+
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 12333455555555544333222 111111112235555555555544443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=2.1e-07 Score=87.34 Aligned_cols=210 Identities=16% Similarity=0.181 Sum_probs=127.7
Q ss_pred cEEEcCCCCCCHHHH-HHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHh
Q 007526 165 SSVDMSGRNFGDEGL-FFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILV 243 (600)
Q Consensus 165 ~~L~Ls~~~l~~~~~-~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 243 (600)
..+-+-++.|...+- ..++. .++.++++||.+|.|++ |..+..++.++|.|+.|+|++|++... |.....
T Consensus 48 ellvln~~~id~~gd~~~~~~---~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~ 118 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGS---SVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPL 118 (418)
T ss_pred hhheecCCCCCcchhHHHHHH---Hhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc----cccCcc
Confidence 345556666755442 22222 25788999999998875 788888888999999999999988654 222212
Q ss_pred hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCC-----ChhhHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMI-----DYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318 (600)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 318 (600)
...+|+.|-|.+..+...... ..+..+|.++.|.++.|.+ .+...+.. .+.+++|+..+|....
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~---s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~------s~~v~tlh~~~c~~~~-- 187 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQST---SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW------STEVLTLHQLPCLEQL-- 187 (418)
T ss_pred cccceEEEEEcCCCCChhhhh---hhhhcchhhhhhhhccchhhhhcccccccccc------chhhhhhhcCCcHHHH--
Confidence 347889999998887765433 3455567788888877732 11111111 2345566666654211
Q ss_pred HHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCC
Q 007526 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (600)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (600)
.....+.-.-+|++..+-+..|.+.+.....-. ...+.+..|+|+.++|.+-. -.+.+..++.|..|.++++.
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s----e~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS----EPFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccC----CCCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCc
Confidence 112222223456777777777766543222111 23346667788887777632 12456677888888888887
Q ss_pred CCh
Q 007526 399 IGD 401 (600)
Q Consensus 399 l~~ 401 (600)
+.|
T Consensus 261 l~d 263 (418)
T KOG2982|consen 261 LSD 263 (418)
T ss_pred ccc
Confidence 766
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.45 E-value=2.7e-09 Score=108.14 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=16.5
Q ss_pred ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCC
Q 007526 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (600)
Q Consensus 361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (600)
|+.+.|..|.+.. ++..+.++..|+.|||+.|+++
T Consensus 100 Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 100 LESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred HHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhh
Confidence 4444444444433 4444445555555555555444
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.30 E-value=1.9e-08 Score=102.13 Aligned_cols=79 Identities=23% Similarity=0.239 Sum_probs=37.3
Q ss_pred cEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh
Q 007526 221 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300 (600)
Q Consensus 221 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 300 (600)
...||+.|++... +..+..+..|+.+.|..|.+.. ++..+.++..|+.|||+.|++ ..++..+..
T Consensus 78 ~~aDlsrNR~~el-----p~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~Nql-----S~lp~~lC~ 142 (722)
T KOG0532|consen 78 VFADLSRNRFSEL-----PEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQL-----SHLPDGLCD 142 (722)
T ss_pred hhhhccccccccC-----chHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchh-----hcCChhhhc
Confidence 4456777766542 2222223445555555554433 333333445566666666655 333433332
Q ss_pred CCCccEEEccCCCCC
Q 007526 301 NSTIRSLHLNGNYGG 315 (600)
Q Consensus 301 ~~~L~~L~L~~n~l~ 315 (600)
+ -|+.|-+++|+++
T Consensus 143 l-pLkvli~sNNkl~ 156 (722)
T KOG0532|consen 143 L-PLKVLIVSNNKLT 156 (722)
T ss_pred C-cceeEEEecCccc
Confidence 2 2455555555443
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=2e-07 Score=68.51 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=7.2
Q ss_pred CCccEEEccCCCCChH
Q 007526 499 NTISILDLRANGLRDE 514 (600)
Q Consensus 499 ~~L~~L~Ls~n~i~~~ 514 (600)
++|++|++++|.|+..
T Consensus 25 ~~L~~L~l~~N~l~~i 40 (61)
T PF13855_consen 25 PNLETLDLSNNNLTSI 40 (61)
T ss_dssp TTESEEEETSSSESEE
T ss_pred CCCCEeEccCCccCcc
Confidence 4444444444444433
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=5.9e-06 Score=90.72 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=47.1
Q ss_pred ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440 (600)
Q Consensus 361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 440 (600)
++.|+|++|.+... ++..+..+++|+.|+|++|.+.+. ++..+..+++|+.|+|++|.++.. ++..+.
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGS----IPESLG 487 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCC----CchHHh
Confidence 55566666655543 445555666666666666655543 444455556666666666665543 223333
Q ss_pred cCCCcCEEECcCCCCChh
Q 007526 441 DNSVITSLDLAYNPIGAD 458 (600)
Q Consensus 441 ~~~~L~~L~Ls~n~i~~~ 458 (600)
.+++|++|+|++|.++..
T Consensus 488 ~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGR 505 (623)
T ss_pred cCCCCCEEECcCCccccc
Confidence 445666666666655443
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=4.7e-06 Score=91.53 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=76.3
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHH
Q 007526 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML 495 (600)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l 495 (600)
.++.|+|++|.+... ++..+..+++|+.|+|++|.+... +...+..+++|+.|++++|.++...+..+.
T Consensus 419 ~v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIPESLG--- 487 (623)
T ss_pred EEEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCchHHh---
Confidence 377888888888654 334455568888888888887643 333456678888888888888776554443
Q ss_pred hhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007526 496 RYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540 (600)
Q Consensus 496 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i 540 (600)
++++|+.|+|++|.++...+..+.... ..+..+++.+|..
T Consensus 488 -~L~~L~~L~Ls~N~l~g~iP~~l~~~~----~~~~~l~~~~N~~ 527 (623)
T PLN03150 488 -QLTSLRILNLNGNSLSGRVPAALGGRL----LHRASFNFTDNAG 527 (623)
T ss_pred -cCCCCCEEECcCCcccccCChHHhhcc----ccCceEEecCCcc
Confidence 458888888888888876655554421 3467788888853
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.98 E-value=9.5e-07 Score=99.20 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCCccEEEcCCCC--CCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007526 161 LRAFSSVDMSGRN--FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (600)
Q Consensus 161 ~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (600)
++.++.|-+.+|. +... -.+.|..++.|+.|||++|.- ...++..++.+-+|+.|+++++.+.. +
T Consensus 544 ~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~~-----L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGISH-----L 610 (889)
T ss_pred CCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCccc-----c
Confidence 3456666666553 2111 123355667777777776541 23455556666677777777777653 6
Q ss_pred HHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEcc
Q 007526 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (600)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (600)
+..+.++..|.+|++..+.-... ++..+..+.+|++|.+....... + ......+..+.+|+.+...
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~~~~-~-~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSALSN-D-KLLLKELENLEHLENLSIT 676 (889)
T ss_pred chHHHHHHhhheecccccccccc----ccchhhhcccccEEEeecccccc-c-hhhHHhhhcccchhhheee
Confidence 66666777777777776643221 13333445777777776543111 1 2223333445555555543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=6.3e-06 Score=68.79 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHH
Q 007526 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (600)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 494 (600)
..+..++|+.|++... ......+.....|+..+|++|.+.+...+.. ...+.+++|++++|.|.+.+.+ ++.+
T Consensus 27 kE~h~ldLssc~lm~i--~davy~l~~~~el~~i~ls~N~fk~fp~kft----~kf~t~t~lNl~~neisdvPeE-~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYI--ADAVYMLSKGYELTKISLSDNGFKKFPKKFT----IKFPTATTLNLANNEISDVPEE-LAAM 99 (177)
T ss_pred HHhhhcccccchhhHH--HHHHHHHhCCceEEEEecccchhhhCCHHHh----hccchhhhhhcchhhhhhchHH-Hhhh
Confidence 3455677777766532 1133344445667777777776544322111 2234667777777777666555 5554
Q ss_pred HhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHH
Q 007526 495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 545 (600)
Q Consensus 495 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~ 545 (600)
+.|+.|+++.|.+.... ..+... .++-.||..+|.+-....
T Consensus 100 ----~aLr~lNl~~N~l~~~p-~vi~~L-----~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 100 ----PALRSLNLRFNPLNAEP-RVIAPL-----IKLDMLDSPENARAEIDV 140 (177)
T ss_pred ----HHhhhcccccCccccch-HHHHHH-----HhHHHhcCCCCccccCcH
Confidence 67777777777666542 223333 446666666665554333
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=4.9e-07 Score=66.45 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=50.8
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCC
Q 007526 499 NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570 (600)
Q Consensus 499 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l 570 (600)
|+|++|++++|.|+......+..+ +.|++|++++|.|+......+..+.+ |++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l-----~~L~~L~l~~N~l~~i~~~~f~~l~~------L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNL-----PNLETLDLSNNNLTSIPPDAFSNLPN------LRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTG-----TTESEEEETSSSESEEETTTTTTSTT------ESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCC-----CCCCEeEccCCccCccCHHHHcCCCC------CCEEeCcCCcC
Confidence 579999999999998766666655 88999999999999877766655544 99999999975
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=4.3e-06 Score=69.74 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=66.6
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHH
Q 007526 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (600)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 382 (600)
.+..++|+.|.+.... .....+.....|+..+|++|.+.+. ...+....+.++.|++++|.|++ +|..
T Consensus 28 E~h~ldLssc~lm~i~--davy~l~~~~el~~i~ls~N~fk~f-----p~kft~kf~t~t~lNl~~neisd-----vPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIA--DAVYMLSKGYELTKISLSDNGFKKF-----PKKFTIKFPTATTLNLANNEISD-----VPEE 95 (177)
T ss_pred HhhhcccccchhhHHH--HHHHHHhCCceEEEEecccchhhhC-----CHHHhhccchhhhhhcchhhhhh-----chHH
Confidence 3445566666543211 1223334455667777777766542 22233333467777777777777 6666
Q ss_pred HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHH
Q 007526 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431 (600)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 431 (600)
+..++.|+.|+++.|.+.. .+..+..+.++..|+..+|.+-...
T Consensus 96 ~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred HhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCccccCc
Confidence 7777778888888777765 3344444566777777777655443
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.75 E-value=1.4e-05 Score=89.95 Aligned_cols=131 Identities=23% Similarity=0.264 Sum_probs=77.7
Q ss_pred CCCcCEEEeecCC--CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 245 NAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (600)
Q Consensus 245 ~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 322 (600)
++.|+.|-+..|. +.... ..++..++.|+.|||++|.- ...+|..++.+-+|+.|+++++.+. .+
T Consensus 544 ~~~L~tLll~~n~~~l~~is----~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-----~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEIS----GEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-----HL 610 (889)
T ss_pred CCccceEEEeecchhhhhcC----HHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-----cc
Confidence 4568888777775 32221 12244558888888887632 2567778888888888888888765 44
Q ss_pred HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (600)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 395 (600)
+..+.+++.|.+|++..+..-... .+.....++|++|.+.......... ....+.++.+|+.+...
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~-----~~i~~~L~~Lr~L~l~~s~~~~~~~--~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESI-----PGILLELQSLRVLRLPRSALSNDKL--LLKELENLEHLENLSIT 676 (889)
T ss_pred chHHHHHHhhheeccccccccccc-----cchhhhcccccEEEeeccccccchh--hHHhhhcccchhhheee
Confidence 566777888888888876432111 1111223478888876654222111 22334455555555553
No 61
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.54 E-value=0.0001 Score=73.97 Aligned_cols=347 Identities=17% Similarity=0.076 Sum_probs=199.3
Q ss_pred cCCCccEEEcccCCCCHHHHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHH
Q 007526 188 YNQTAEEVSFAANGITAAGIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKA 265 (600)
Q Consensus 188 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~ 265 (600)
....++.+.|.-|.+..+....+..... ..+.++++|++.|.+.+....+|.+- .--++++.|++++..+..
T Consensus 133 ~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~ 206 (553)
T KOG4242|consen 133 PSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISK 206 (553)
T ss_pred ccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHH
Confidence 3445677777777766544444433322 24568889999998888766555532 112778888887765544
Q ss_pred HHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHH-HHHHHHHhhcCCCCCEEEccCCCCCc
Q 007526 266 IAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG-ANALAKGLEGNKSLRELHLHGNSIGD 344 (600)
Q Consensus 266 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~~ 344 (600)
+...-. -..+.+++++.|...+.- ..+.........++.++.++..+.-.. ...+. ...-.++...+++.|....
T Consensus 207 l~~qsg-~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~--~g~~tkl~~~kls~ng~s~ 282 (553)
T KOG4242|consen 207 LLIQSG-RLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLA--AGRTTKLTFGKLSRNGTSP 282 (553)
T ss_pred hhhhhc-cccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhcccccc--cccccccchhhhccCCCCc
Confidence 442211 134778899888765432 222333334556777877776654321 11111 1223467777777776542
Q ss_pred ----hHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCC--CcEEEccCCCCChHHHHHHHHHhhcCCCcc
Q 007526 345 ----EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS--LLWINLYMNDIGDEGAEKIADALKQNRTIT 418 (600)
Q Consensus 345 ----~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~ 418 (600)
++....-+.+ ...+++ +|++..+....+....+.-.+..... =-.+|+..|...+.. ..++-..-..++
T Consensus 283 skg~Egg~~~k~~f-S~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~---vleaci~g~R~q 357 (553)
T KOG4242|consen 283 SKGEEGGGAEKDTF-SPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE---VLEACIFGQRVQ 357 (553)
T ss_pred cccccccccccccc-CcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccc---hhhccccceeee
Confidence 2222221222 233466 78888887776655444322222221 234566666554432 112222234588
Q ss_pred EEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC-----ChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHH
Q 007526 419 TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI-----GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 493 (600)
Q Consensus 419 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-----~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~ 493 (600)
+|.+..|++...+-... .+...+.++.+++.+-.- ...........-....-+..+.++.|.... +...+.+
T Consensus 358 ~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in 434 (553)
T KOG4242|consen 358 VLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAIN 434 (553)
T ss_pred Eeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHH
Confidence 88888888776554333 345557788888765321 111111122222334567788888887644 3455566
Q ss_pred HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHH
Q 007526 494 MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALK 553 (600)
Q Consensus 494 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~ 553 (600)
.+...+.+..|++++|...+.+...+.+.++ .|..++.+..+.|.+++.+...+.....
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~~~gl~p~~~~~p 493 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPEDPGLGPRNEERP 493 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCccccccchhhhhcc
Confidence 6677788889999998888887777776654 4578888888888887766655544433
No 62
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.53 E-value=3.4e-05 Score=77.33 Aligned_cols=315 Identities=17% Similarity=0.135 Sum_probs=172.1
Q ss_pred CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (600)
Q Consensus 189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (600)
.+.+++++++.|.+.+.....+.+-. --++++.+++++.++..++.. ..-..+.+++++.|...+.....+ .
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~------~pl~lr~c~lsskfis~l~~q-sg~~~lteldls~n~~Kddip~~~-n 235 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG------NPLSLRVCELSSKFISKLLIQ-SGRLWLTELDLSTNGGKDDIPRTL-N 235 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC------CccchhhhhhhhhHHHHhhhh-hccccccccccccCCCCccchhHH-H
Confidence 34556666666655544333332211 114555555555443333311 001235666666665444322212 2
Q ss_pred HHhcCCCccEEeecCCCCChhhHHHHHHHH--hhCCCccEEEccCCCCCh----HHHHHHHHHhhcCCCCCEEEccCCCC
Q 007526 269 LLKNNSILRVLELNNNMIDYSGFTSLAEAL--LENSTIRSLHLNGNYGGA----LGANALAKGLEGNKSLRELHLHGNSI 342 (600)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~L~~L~Ls~n~l 342 (600)
.......++.++.++..+.- ..+...+ ..-++++..+++.|.... ++.....+.+..-+++ +|++..+..
T Consensus 236 ~~a~~~vl~~ld~s~tgirl---D~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~ 311 (553)
T KOG4242|consen 236 KKAGTLVLFKLDRSTTGIRL---DLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYT 311 (553)
T ss_pred Hhhhhhhhhcccccccccch---hhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccC
Confidence 22222346666666554431 1111111 123456666666554321 1222222333344567 778888777
Q ss_pred CchHHHHHHHhhhcCCCcc-cEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEE
Q 007526 343 GDEGIRALMSGLSSRKGKL-AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421 (600)
Q Consensus 343 ~~~~~~~l~~~l~~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~ 421 (600)
.++-...+..++......+ -.+|+..|...+.. ..+.-.+-..+++|++..|.+..+|.... .+...+.++.++
T Consensus 312 psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~---vleaci~g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~ 386 (553)
T KOG4242|consen 312 PSEKLKSMLLGLAENEATLGARLDLRRCPLERAE---VLEACIFGQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILK 386 (553)
T ss_pred chhhhhhhhcccccccccccccCChhhccccccc---hhhccccceeeeEeecccccccccccccc--ceeecccccccc
Confidence 7777777666554333222 45777777655432 11222223458888888887777654433 455567788887
Q ss_pred ccCCCC---ChHHHHHHH--HHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHh
Q 007526 422 LGGNNI---HSKGASAIA--RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496 (600)
Q Consensus 422 L~~n~l---~~~~~~~l~--~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~ 496 (600)
+.+-.- .+.+..+.. ..-...--+..+.++.|..+.. ...+...+...+.+..|++++|..++.+...+++.++
T Consensus 387 agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq 465 (553)
T KOG4242|consen 387 AGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ 465 (553)
T ss_pred ccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHHHhhccCcccccccccCCCcccCCCCcCccccC
Confidence 765322 111111111 1111224588888888877653 4455566677788999999999888888888888888
Q ss_pred hCCCccEEEccCCCCChHHHHHHHH
Q 007526 497 YNNTISILDLRANGLRDEGAKCLAQ 521 (600)
Q Consensus 497 ~~~~L~~L~Ls~n~i~~~~~~~l~~ 521 (600)
.+-+++.+..+.|.+++.+...+..
T Consensus 466 ~n~rlr~ipds~n~p~~~gl~p~~~ 490 (553)
T KOG4242|consen 466 SNCRLRPIPDSLNLPEDPGLGPRNE 490 (553)
T ss_pred CCCccCCCCCCCCCccccccchhhh
Confidence 8888999999988888876554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=2.3e-05 Score=70.01 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=55.7
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhc-CCCccEEEccCCCCChHHHHHHHHH
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
+...+||++|.+... ..+..++.|.+|.+.+|.|+.. ...+.. +++|+.|.+.+|.|...+. + .-
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d--l-~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD--L-DP 108 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh--c-ch
Confidence 566677777766542 2345666677777777776652 222222 4567777777776654332 1 11
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccC
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 480 (600)
+..||.|++|.+-+|++....- +=..++...++|++||+.+
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccCCccceeeecCCchhcccC-ceeEEEEecCcceEeehhh
Confidence 3345677777776666543210 0011223345555555544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=5.6e-05 Score=70.77 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=72.6
Q ss_pred CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (600)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (600)
+.+.+.|+..+|.++|.. ...+++.|+.|.|+-|.|+... -+..|++|++|.|..|.|.+. ..+ .
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sl--dEL-~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESL--DEL-E 82 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccH--HHH-H
Confidence 456777888888888742 2334677888888888877632 245568888888888877653 223 2
Q ss_pred HHhhCCCccEEeccCcCC-ChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526 466 VLKFHGNINTLKLGWCQI-GASGAEFVADMLRYNNTISILDLRANGLRDEG 515 (600)
Q Consensus 466 ~l~~~~~L~~L~l~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 515 (600)
.++++++|++|.|..|.- +.-+...-...+.-+|+|+.||= -.++.+.
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn--v~VteeE 131 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN--VPVTEEE 131 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC--ccccHHH
Confidence 346677888888887743 33344445556666788887752 2455543
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00011 Score=49.51 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=18.0
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (600)
+|++|++++|.|++ ++..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555554 44444555555555555555543
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00016 Score=48.73 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=17.1
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (600)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (600)
+|++|++++|+|++ ++..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555554 3333445555555555555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=7.7e-05 Score=69.89 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=71.7
Q ss_pred CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (600)
Q Consensus 189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (600)
+.+.++|++.+|++++.. +..+++.|+.|.||-|+|+.. ..+.+|.+|++|.|..|.|.+.. .+ .
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sld--EL-~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLD--EL-E 82 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHH--HH-H
Confidence 457888899999888652 235678899999998888753 44556788888888888887643 22 3
Q ss_pred HHhcCCCccEEeecCCCCChhhHH-HHHHHHhhCCCccEEE
Q 007526 269 LLKNNSILRVLELNNNMIDYSGFT-SLAEALLENSTIRSLH 308 (600)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~ 308 (600)
.++++++|+.|+|..|.-...+.. .=...+..+++|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 466778888888888865433222 2223444567777764
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00013 Score=65.32 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=8.6
Q ss_pred cCCCCCEEEccCCCCCc
Q 007526 328 GNKSLRELHLHGNSIGD 344 (600)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~ 344 (600)
.++.|.+|.++.|+|+.
T Consensus 62 ~l~rL~tLll~nNrIt~ 78 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITR 78 (233)
T ss_pred CccccceEEecCCccee
Confidence 44455555555555543
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00025 Score=63.59 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=48.8
Q ss_pred CcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHH
Q 007526 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQ 521 (600)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 521 (600)
.++.+|-++..|..+|.+.+ ..++.|+.|.+.+| ++.+-+...+... .++|+.|++++| +||+.|+.++..
T Consensus 102 ~IeaVDAsds~I~~eGle~L----~~l~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL----RDLRSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHH----hccchhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHHH
Confidence 45666666666665555554 33456666666666 4555555555542 366666666666 666666666655
Q ss_pred HHhhcCccccEEEccCC
Q 007526 522 SFKVVNEALTSIDLAFN 538 (600)
Q Consensus 522 ~l~~~n~~L~~L~ls~n 538 (600)
. ++|+.|.+.+=
T Consensus 175 l-----knLr~L~l~~l 186 (221)
T KOG3864|consen 175 L-----KNLRRLHLYDL 186 (221)
T ss_pred h-----hhhHHHHhcCc
Confidence 5 55666665543
No 70
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.92 E-value=0.0029 Score=61.21 Aligned_cols=120 Identities=27% Similarity=0.241 Sum_probs=67.9
Q ss_pred CCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526 387 KSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (600)
Q Consensus 387 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (600)
+.++..++.++ .|...-...+..++..++..+.+.+.+.+..+....+++.++..|+.|++|++.+|.|++.++..+..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 45556666555 45555555566666666666666666666666555566666666666666666666666666666666
Q ss_pred HHhhCCCccEEeccCc--CCChhHHHHHHHHHhhCCCccEEEc
Q 007526 466 VLKFHGNINTLKLGWC--QIGASGAEFVADMLRYNNTISILDL 506 (600)
Q Consensus 466 ~l~~~~~L~~L~l~~n--~i~~~~~~~l~~~l~~~~~L~~L~L 506 (600)
++..+.+|..+.+.+- ..+...-..++.++..|.+|-.+-.
T Consensus 278 al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy 320 (353)
T KOG3735|consen 278 ALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGY 320 (353)
T ss_pred HHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccccc
Confidence 6666666665555432 1222223334555555555544433
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.00053 Score=61.57 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=64.5
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHH
Q 007526 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVA 492 (600)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~ 492 (600)
..++.+|-+++.|..+|...+... +.++.|.+.+| .+.|.+.+.+.. ..++|+.|++++| +||+.+...+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHH
Confidence 457788888888888887766555 88888888888 477777777765 3478999999988 78888887776
Q ss_pred HHHhhCCCccEEEccCC
Q 007526 493 DMLRYNNTISILDLRAN 509 (600)
Q Consensus 493 ~~l~~~~~L~~L~Ls~n 509 (600)
.. ++|+.|.+.+=
T Consensus 174 ~l----knLr~L~l~~l 186 (221)
T KOG3864|consen 174 KL----KNLRRLHLYDL 186 (221)
T ss_pred Hh----hhhHHHHhcCc
Confidence 66 88888888753
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.40 E-value=0.0013 Score=61.60 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=30.3
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH-HHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE-GAEKIADALKQNRTITTIDLGGNNIHS 429 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (600)
.|+.|++.++.++.. ..+..+++|++|.++.|..... ++..+ ...+++|++|++++|+|..
T Consensus 44 ~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred chhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCcccc
Confidence 456666666655541 2234555666666666632221 11111 1223566666666665553
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.00096 Score=62.45 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=29.3
Q ss_pred CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCC
Q 007526 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (600)
Q Consensus 359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 426 (600)
++|+.|+++.|.....+- +.-....+|+|++|++++|+|.+ +..+ ..++.+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~--l~vl~e~~P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGG--LEVLAEKAPNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCccccccc--ceehhhhCCceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCC
Confidence 356666666662222111 22223445666666666665554 1112 123334555555555553
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.24 E-value=0.0039 Score=63.43 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=84.5
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC-CCChHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVK 236 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 236 (600)
++.++++++|++++|.+.. ++. -..+|++|.+++|.- +..+++.+. ++|+.|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-----LP~---LP~sLtsL~Lsnc~n----LtsLP~~LP--~nLe~L~Ls~Cs~L~s---- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-----LPV---LPNELTEITIENCNN----LTTLPGSIP--EGLEKLTVCHCPEISG---- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-----cCC---CCCCCcEEEccCCCC----cccCCchhh--hhhhheEccCcccccc----
Confidence 5567999999999997765 231 235799999998752 112222232 57999999988 4431
Q ss_pred HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC-CChhhHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (600)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 315 (600)
++ .+|+.|++.++.... ...++ ++|+.|.+.+++ ... ..++.. -.++|++|++++|...
T Consensus 110 -LP------~sLe~L~L~~n~~~~--L~~LP------ssLk~L~I~~~n~~~~---~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 110 -LP------ESVRSLEIKGSATDS--IKNVP------NGLTSLSINSYNPENQ---ARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred -cc------cccceEEeCCCCCcc--cccCc------chHhheeccccccccc---cccccc--cCCcccEEEecCCCcc
Confidence 22 568999998776543 11222 357788775432 110 111110 1368999999988754
Q ss_pred hHHHHHHHHHhhcCCCCCEEEccCC
Q 007526 316 ALGANALAKGLEGNKSLRELHLHGN 340 (600)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (600)
..+ ..+. .+|+.|+++.+
T Consensus 170 ~LP-----~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 170 ILP-----EKLP--ESLQSITLHIE 187 (426)
T ss_pred cCc-----cccc--ccCcEEEeccc
Confidence 321 1111 47889998776
No 75
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.19 E-value=0.038 Score=53.69 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=105.7
Q ss_pred HHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526 350 LMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (600)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (600)
-..-+....+.++..++++. .|....+..+.+.+...+..+.+.+.+...++.-...+...+..++.|+.|++.+|.|+
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFIt 268 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFIT 268 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccc
Confidence 33444456668888888775 56767777788888888999999998888888777777888888999999999999999
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCC--CCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526 429 SKGASAIARVLKDNSVITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (600)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 484 (600)
+.++.++..++..+.+|+.+.+.+. .++......+...+..+.+|-.+....-.-+
T Consensus 269 g~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~fe~~g 326 (353)
T KOG3735|consen 269 GLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYHFEQQG 326 (353)
T ss_pred cHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccccccCCCC
Confidence 9999999999999999999888664 3555555667778888888777666555443
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.86 E-value=0.014 Score=34.79 Aligned_cols=24 Identities=46% Similarity=0.668 Sum_probs=12.9
Q ss_pred CCccEEEccCCCCChHHHHHHHHH
Q 007526 499 NTISILDLRANGLRDEGAKCLAQS 522 (600)
Q Consensus 499 ~~L~~L~Ls~n~i~~~~~~~l~~~ 522 (600)
++|++|||++|.|++.|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 445555555555555555555544
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.86 E-value=0.0098 Score=60.58 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=42.7
Q ss_pred hccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhCCCcCEEEeecC-CCChHHH
Q 007526 186 LGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGA 263 (600)
Q Consensus 186 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~ 263 (600)
+..+.+++.|++++|.++. ++. + -++|++|+++++ .++. +++.+ ..+|++|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-----LP~-L--P~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~s--- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-----LPV-L--PNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEISG--- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-----cCC-C--CCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCcccccc---
Confidence 4446788888888887653 221 1 135888888764 3321 22222 156777887777 4432
Q ss_pred HHHHHHHhcCCCccEEeecCCCC
Q 007526 264 KAIAELLKNNSILRVLELNNNMI 286 (600)
Q Consensus 264 ~~l~~~l~~~~~L~~L~L~~n~i 286 (600)
++ .+|+.|++..+..
T Consensus 110 --LP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 110 --LP------ESVRSLEIKGSAT 124 (426)
T ss_pred --cc------cccceEEeCCCCC
Confidence 22 4577777766544
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.83 E-value=0.015 Score=34.67 Aligned_cols=25 Identities=44% Similarity=0.753 Sum_probs=13.9
Q ss_pred CCcCEEECcCCCCChhHHHHHHHHH
Q 007526 443 SVITSLDLAYNPIGADGAKALSEVL 467 (600)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (600)
++|++|||++|.|++.|...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4455555555555555555555443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.80 E-value=0.0064 Score=34.82 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=8.6
Q ss_pred CCccEEEccCCCCChHHHHHH
Q 007526 499 NTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 499 ~~L~~L~Ls~n~i~~~~~~~l 519 (600)
++|++|+|++|.|++.++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 344444444444444444433
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.33 E-value=0.012 Score=33.68 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=8.4
Q ss_pred CCcCEEECcCCCCChhHHHHH
Q 007526 443 SVITSLDLAYNPIGADGAKAL 463 (600)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l 463 (600)
++|++|+|++|+|+++++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 344444444444444444433
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.80 E-value=0.072 Score=31.09 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=12.6
Q ss_pred CCCccEEEccCC-CCChHHHHHH
Q 007526 498 NNTISILDLRAN-GLRDEGAKCL 519 (600)
Q Consensus 498 ~~~L~~L~Ls~n-~i~~~~~~~l 519 (600)
|++|++|+|++| .|+|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 355666666666 4666555544
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.04 E-value=0.26 Score=28.64 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=9.7
Q ss_pred CCCcEEEccCC-CCChHHHHH
Q 007526 387 KSLLWINLYMN-DIGDEGAEK 406 (600)
Q Consensus 387 ~~L~~L~Ls~n-~l~~~~~~~ 406 (600)
++|++|+|++| .++|.|+..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 44555555554 355544443
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.18 E-value=0.39 Score=24.79 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=3.2
Q ss_pred ccEEEccCCC
Q 007526 501 ISILDLRANG 510 (600)
Q Consensus 501 L~~L~Ls~n~ 510 (600)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3344444433
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.95 E-value=1.8 Score=45.42 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=17.7
Q ss_pred CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC
Q 007526 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN 228 (600)
Q Consensus 189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 228 (600)
.+.+..++|++|++-. ++.+..+...-|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhhc--hhhhhHHHHhcchhheeecccc
Confidence 3455555555555422 2233333333455555555555
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.61 E-value=3.4 Score=43.51 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=17.8
Q ss_pred CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (600)
Q Consensus 359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (600)
+.+..++|++|++-..+ .+...-...|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchh--hhhHHHHhcchhheeecccc
Confidence 34555555555543321 12233344555666666655
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=76.78 E-value=1.1 Score=24.80 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=5.9
Q ss_pred eeEEEccCCCCc
Q 007526 560 VTSLNLANNFLT 571 (600)
Q Consensus 560 L~~L~l~~n~l~ 571 (600)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555444
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.95 E-value=0.22 Score=42.42 Aligned_cols=84 Identities=11% Similarity=0.267 Sum_probs=31.1
Q ss_pred hhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHH
Q 007526 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490 (600)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~ 490 (600)
+..+.+|+.+.+.. .+...+. ..+..+++|+.+.+..+ +...+. ..+..+++|+.+.+.+ .+...+..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~----~~F~~~~~l~~i~~~~~-~~~i~~----~~F~~~~~l~~i~~~~-~~~~i~~~- 75 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGE----NAFSNCTSLKSINFPNN-LTSIGD----NAFSNCKSLESITFPN-NLKSIGDN- 75 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-T----TTTTT-TT-SEEEESST-TSCE-T----TTTTT-TT-EEEEETS-TT-EE-TT-
T ss_pred HhCCCCCCEEEECC-CeeEeCh----hhccccccccccccccc-ccccce----eeeecccccccccccc-cccccccc-
Confidence 33455666666653 2332221 22334456666666554 322211 1223444566666644 22222211
Q ss_pred HHHHHhhCCCccEEEccCC
Q 007526 491 VADMLRYNNTISILDLRAN 509 (600)
Q Consensus 491 l~~~l~~~~~L~~L~Ls~n 509 (600)
.+..+++|+.+++..+
T Consensus 76 ---~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 76 ---AFSNCTNLKNIDIPSN 91 (129)
T ss_dssp ---TTTT-TTECEEEETTT
T ss_pred ---cccccccccccccCcc
Confidence 2233456666666443
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=72.03 E-value=3.3 Score=23.83 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=5.3
Q ss_pred CccEEEccCCCCC
Q 007526 500 TISILDLRANGLR 512 (600)
Q Consensus 500 ~L~~L~Ls~n~i~ 512 (600)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444433
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=72.03 E-value=3.3 Score=23.83 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=5.3
Q ss_pred CccEEEccCCCCC
Q 007526 500 TISILDLRANGLR 512 (600)
Q Consensus 500 ~L~~L~Ls~n~i~ 512 (600)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444433
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.00 E-value=0.37 Score=40.95 Aligned_cols=105 Identities=16% Similarity=0.291 Sum_probs=43.3
Q ss_pred HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (600)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (600)
+..+++|+.+.+..+ +...+ ..++..+++|+.+++.++ +...+. .++..++.|+.+.+.++ +...+.
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~----~~~F~~~~~l~~i~~~~~-~~~i~~----~~F~~~~~l~~i~~~~~-~~~i~~-- 74 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIG----ENAFSNCTSLKSINFPNN-LTSIGD----NAFSNCKSLESITFPNN-LKSIGD-- 74 (129)
T ss_dssp TTT-TT--EEEETST---EE-----TTTTTT-TT-SEEEESST-TSCE-T----TTTTT-TT-EEEEETST-T-EE-T--
T ss_pred HhCCCCCCEEEECCC-eeEeC----hhhccccccccccccccc-ccccce----eeeeccccccccccccc-cccccc--
Confidence 445667777776532 33211 123445567777777664 443322 22444566777777542 222111
Q ss_pred HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccC
Q 007526 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (600)
Q Consensus 463 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 508 (600)
..+..+++|+.+++..+ +...+... +.++ .|+.+.+..
T Consensus 75 --~~F~~~~~l~~i~~~~~-~~~i~~~~----f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 75 --NAFSNCTNLKNIDIPSN-ITEIGSSS----FSNC-NLKEINIPS 112 (129)
T ss_dssp --TTTTT-TTECEEEETTT--BEEHTTT----TTT--T--EEE-TT
T ss_pred --ccccccccccccccCcc-ccEEchhh----hcCC-CceEEEECC
Confidence 22344567777777554 43333222 3333 666666654
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.22 E-value=8.3 Score=22.45 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=5.7
Q ss_pred CccEEEccCCCCC
Q 007526 500 TISILDLRANGLR 512 (600)
Q Consensus 500 ~L~~L~Ls~n~i~ 512 (600)
+|++|++++|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=44.02 E-value=1.1 Score=41.76 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=30.5
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (600)
.+..||++.|.+.. +++.+.....+.++++..|..+. .+......+.++++++-+|.++
T Consensus 66 ~~~rl~~sknq~~~-----~~~d~~q~~e~~~~~~~~n~~~~-----~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKF-----LPKDAKQQRETVNAASHKNNHSQ-----QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhccHhhHhh-----ChhhHHHHHHHHHHHhhccchhh-----CCccccccCCcchhhhccCcch
Confidence 45556665554433 44444444455555555554443 3444455566666666666543
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=40.71 E-value=0.81 Score=42.53 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=27.6
Q ss_pred ccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCc
Q 007526 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344 (600)
Q Consensus 276 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 344 (600)
|..||++.|.+ ..+++-+.....+.++++..|..+.. +..+...++++++++-+|.+..
T Consensus 67 ~~rl~~sknq~-----~~~~~d~~q~~e~~~~~~~~n~~~~~-----p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 67 LVRLDLSKNQI-----KFLPKDAKQQRETVNAASHKNNHSQQ-----PKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHHHhccHhhH-----hhChhhHHHHHHHHHHHhhccchhhC-----CccccccCCcchhhhccCcchH
Confidence 44455555444 33344444444444444444443222 2334455566666666655443
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=36.47 E-value=21 Score=20.80 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=7.3
Q ss_pred CccEEEccCCCCCh
Q 007526 500 TISILDLRANGLRD 513 (600)
Q Consensus 500 ~L~~L~Ls~n~i~~ 513 (600)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45555555555544
No 95
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=22.28 E-value=35 Score=28.51 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=5.5
Q ss_pred HHHHhhcCCCcCE
Q 007526 435 IARVLKDNSVITS 447 (600)
Q Consensus 435 l~~~l~~~~~L~~ 447 (600)
+..++..++.|..
T Consensus 53 m~~mF~~~~~l~~ 65 (120)
T PF03382_consen 53 MSGMFAGCSSLNQ 65 (120)
T ss_pred HHHHHhhhhhcCC
Confidence 3334444444444
No 96
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=21.93 E-value=69 Score=18.53 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=3.1
Q ss_pred cEEeccCc
Q 007526 474 NTLKLGWC 481 (600)
Q Consensus 474 ~~L~l~~n 481 (600)
++|++...
T Consensus 3 KtL~L~~v 10 (26)
T PF07723_consen 3 KTLHLDSV 10 (26)
T ss_pred eEEEeeEE
Confidence 33444333
Done!