Query 007526
Match_columns 600
No_of_seqs 427 out of 4075
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 6E-45 2E-49 387.4 44.0 432 154-588 20-457 (461)
2 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-43 9.8E-48 374.5 48.2 415 161-580 2-420 (461)
3 2ca6_A RAN GTPase-activating p 100.0 1.2E-31 4.2E-36 277.8 30.2 307 197-523 11-329 (386)
4 2ca6_A RAN GTPase-activating p 100.0 3E-31 1E-35 274.9 29.4 288 169-457 11-317 (386)
5 3ogk_B Coronatine-insensitive 100.0 5.9E-31 2E-35 288.6 28.0 391 152-578 102-533 (592)
6 2p1m_B Transport inhibitor res 100.0 3.9E-30 1.3E-34 282.2 31.1 384 152-578 95-526 (594)
7 3goz_A Leucine-rich repeat-con 100.0 1.9E-30 6.5E-35 266.3 22.3 275 248-522 24-307 (362)
8 3goz_A Leucine-rich repeat-con 100.0 4.5E-30 1.5E-34 263.5 23.0 288 167-458 3-299 (362)
9 3ogk_B Coronatine-insensitive 100.0 2E-29 6.7E-34 276.5 28.0 407 155-597 66-524 (592)
10 2p1m_B Transport inhibitor res 100.0 1.7E-27 5.8E-32 261.2 31.6 373 153-568 121-541 (594)
11 4fmz_A Internalin; leucine ric 100.0 3.3E-29 1.1E-33 255.8 12.6 305 160-541 42-346 (347)
12 3rgz_A Protein brassinosteroid 100.0 1.1E-32 3.7E-37 310.6 -18.3 259 274-572 394-718 (768)
13 4fmz_A Internalin; leucine ric 100.0 1.9E-28 6.5E-33 250.1 14.4 305 189-572 43-347 (347)
14 3rgz_A Protein brassinosteroid 100.0 5.6E-33 1.9E-37 313.0 -21.8 385 154-596 239-714 (768)
15 3t6q_A CD180 antigen; protein- 100.0 1.1E-31 3.6E-36 295.3 -11.1 186 360-573 377-562 (606)
16 1o6v_A Internalin A; bacterial 100.0 2.5E-28 8.5E-33 259.4 12.8 327 158-573 64-390 (466)
17 1o6v_A Internalin A; bacterial 99.9 1E-28 3.4E-33 262.4 8.7 342 160-596 44-385 (466)
18 3t6q_A CD180 antigen; protein- 99.9 1.5E-30 5.2E-35 286.1 -6.8 302 247-595 255-556 (606)
19 4eco_A Uncharacterized protein 99.9 1.3E-31 4.5E-36 295.1 -16.2 347 185-578 201-607 (636)
20 3v47_A TOLL-like receptor 5B a 99.9 5.7E-30 1.9E-34 271.4 -3.8 371 161-575 29-412 (455)
21 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-29 1.1E-33 270.4 1.6 359 157-575 40-485 (520)
22 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-31 5.5E-36 293.9 -17.8 117 158-289 52-168 (606)
23 4ecn_A Leucine-rich repeat pro 99.9 1.1E-30 3.7E-35 292.9 -11.7 341 183-578 441-847 (876)
24 3v47_A TOLL-like receptor 5B a 99.9 1.3E-29 4.5E-34 268.7 -3.3 375 165-595 13-404 (455)
25 4eco_A Uncharacterized protein 99.9 3.1E-30 1E-34 284.1 -9.3 344 158-551 202-610 (636)
26 2z81_A CD282 antigen, TOLL-lik 99.9 7.3E-29 2.5E-33 269.4 1.6 181 360-574 311-513 (549)
27 2z7x_B TOLL-like receptor 1, v 99.9 3E-29 1E-33 270.5 -5.1 359 162-576 21-462 (520)
28 4ecn_A Leucine-rich repeat pro 99.9 8E-29 2.7E-33 277.8 -3.7 349 160-572 489-865 (876)
29 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-29 4.8E-34 278.5 -10.3 94 158-262 76-169 (606)
30 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-27 4.4E-32 259.6 4.8 318 158-513 46-424 (549)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-28 6.7E-33 266.6 -3.5 165 384-575 350-514 (562)
32 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-29 6.7E-34 281.1 -11.9 144 411-572 476-623 (680)
33 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-28 6E-33 273.4 -6.1 384 160-594 220-617 (680)
34 3o6n_A APL1; leucine-rich repe 99.9 1.4E-27 4.8E-32 247.7 0.8 317 160-548 43-359 (390)
35 2z63_A TOLL-like receptor 4, v 99.9 1.9E-29 6.6E-34 275.3 -13.9 370 158-574 48-534 (570)
36 3o6n_A APL1; leucine-rich repe 99.9 5.6E-27 1.9E-31 243.2 1.7 315 189-578 44-359 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 3E-28 1E-32 259.7 -9.3 208 300-541 126-333 (477)
38 3j0a_A TOLL-like receptor 5; m 99.9 8.5E-28 2.9E-32 273.5 -7.1 311 159-513 45-395 (844)
39 2id5_A Lingo-1, leucine rich r 99.9 1.1E-27 3.7E-32 255.4 -7.5 283 244-574 54-336 (477)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.1E-27 2.1E-31 254.8 -3.6 364 162-576 52-491 (562)
41 3oja_B Anopheles plasmodium-re 99.9 1.4E-26 4.9E-31 253.3 -1.0 314 161-546 50-363 (597)
42 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-25 5.3E-30 236.2 4.3 302 159-542 39-353 (457)
43 3oja_B Anopheles plasmodium-re 99.9 7.7E-26 2.6E-30 247.6 1.1 314 189-576 50-363 (597)
44 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-27 6.7E-32 270.5 -15.5 286 158-484 69-394 (844)
45 2z63_A TOLL-like receptor 4, v 99.9 4.5E-27 1.5E-31 256.5 -12.8 189 327-544 344-534 (570)
46 3bz5_A Internalin-J, INLJ; leu 99.9 5E-25 1.7E-29 232.4 1.5 315 158-571 60-387 (457)
47 3un9_A NLR family member X1; l 99.9 7.9E-22 2.7E-26 201.6 24.8 214 330-546 72-288 (372)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-26 4.1E-31 256.4 -16.4 193 359-574 371-583 (635)
49 3un9_A NLR family member X1; l 99.9 3.2E-21 1.1E-25 197.1 24.2 209 302-514 72-285 (372)
50 1xku_A Decorin; proteoglycan, 99.9 7.9E-25 2.7E-29 221.5 -3.8 247 163-458 32-278 (330)
51 2z80_A TOLL-like receptor 2, v 99.9 4.8E-24 1.6E-28 217.9 0.8 177 360-554 150-329 (353)
52 2ast_B S-phase kinase-associat 99.9 2.1E-21 7.1E-26 196.9 18.8 255 246-543 47-308 (336)
53 1xku_A Decorin; proteoglycan, 99.9 3.2E-25 1.1E-29 224.4 -10.5 275 191-542 32-307 (330)
54 1jl5_A Outer protein YOPM; leu 99.9 2.6E-24 8.8E-29 226.7 -4.3 94 415-542 277-371 (454)
55 2ast_B S-phase kinase-associat 99.9 7.5E-21 2.6E-25 192.8 20.7 233 246-515 70-309 (336)
56 2z80_A TOLL-like receptor 2, v 99.9 3.5E-23 1.2E-27 211.5 0.1 286 161-514 30-316 (353)
57 2ft3_A Biglycan; proteoglycan, 99.9 8.8E-25 3E-29 221.4 -12.1 245 163-457 34-278 (332)
58 2ft3_A Biglycan; proteoglycan, 99.8 2.7E-25 9.3E-30 225.2 -16.5 272 191-512 34-307 (332)
59 1jl5_A Outer protein YOPM; leu 99.8 3E-23 1E-27 218.6 -2.6 222 274-573 131-352 (454)
60 3g06_A SSPH2 (leucine-rich rep 99.8 4E-21 1.4E-25 208.7 9.0 268 162-522 40-307 (622)
61 3g06_A SSPH2 (leucine-rich rep 99.8 4E-21 1.4E-25 208.7 6.5 285 190-568 40-325 (622)
62 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-23 7.2E-28 209.1 -12.3 87 190-286 50-137 (313)
63 1ogq_A PGIP-2, polygalacturona 99.8 7.2E-24 2.5E-28 212.5 -15.8 228 246-512 50-281 (313)
64 3o53_A Protein LRIM1, AGAP0063 99.8 4.1E-22 1.4E-26 200.2 -3.8 172 300-512 78-250 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.8 5.1E-22 1.7E-26 199.6 -3.5 61 414-484 190-250 (317)
66 4g8a_A TOLL-like receptor 4; l 99.8 8.8E-23 3E-27 225.3 -10.6 383 162-594 52-575 (635)
67 2z66_A Variable lymphocyte rec 99.8 1.1E-22 3.7E-27 203.6 -13.9 253 248-541 9-261 (306)
68 1wwl_A Monocyte differentiatio 99.8 6.8E-22 2.3E-26 198.2 -8.8 122 328-457 119-242 (312)
69 4glp_A Monocyte differentiatio 99.8 1.4E-20 4.9E-25 188.3 -0.3 37 443-485 272-308 (310)
70 4fcg_A Uncharacterized protein 99.8 4.8E-21 1.6E-25 193.1 -4.0 233 218-511 81-313 (328)
71 1wwl_A Monocyte differentiatio 99.8 1E-20 3.6E-25 189.5 -2.0 108 360-485 202-310 (312)
72 3zyj_A Leucine-rich repeat-con 99.8 1.5E-21 5E-26 205.6 -9.3 248 247-541 44-292 (440)
73 4fcg_A Uncharacterized protein 99.8 1.3E-20 4.4E-25 190.0 -2.2 155 160-343 79-242 (328)
74 1io0_A Tropomodulin; LRR prote 99.8 1.6E-17 5.4E-22 152.4 18.3 137 379-515 28-167 (185)
75 3zyj_A Leucine-rich repeat-con 99.8 6.9E-21 2.4E-25 200.5 -5.4 248 219-512 44-292 (440)
76 3zyi_A Leucine-rich repeat-con 99.8 6.1E-21 2.1E-25 201.6 -6.8 247 248-541 56-303 (452)
77 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-20 7.6E-25 184.6 -2.5 226 276-542 13-239 (285)
78 3zyi_A Leucine-rich repeat-con 99.8 2.1E-20 7E-25 197.5 -3.5 247 220-512 56-303 (452)
79 4glp_A Monocyte differentiatio 99.8 1.9E-19 6.6E-24 180.1 3.3 59 443-514 251-309 (310)
80 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-20 8.1E-25 184.4 -3.3 251 248-545 13-265 (285)
81 3oja_A Leucine-rich immune mol 99.7 7.5E-21 2.6E-25 202.2 -7.7 217 246-513 34-251 (487)
82 2z66_A Variable lymphocyte rec 99.7 8.5E-21 2.9E-25 189.7 -7.0 13 500-512 249-261 (306)
83 1io0_A Tropomodulin; LRR prote 99.7 3.4E-17 1.2E-21 150.2 16.3 140 151-290 25-167 (185)
84 3oja_A Leucine-rich immune mol 99.7 7.8E-20 2.7E-24 194.4 -2.4 239 215-507 31-270 (487)
85 1h6u_A Internalin H; cell adhe 99.7 4.6E-18 1.6E-22 169.7 7.1 191 274-513 41-231 (308)
86 1h6u_A Internalin H; cell adhe 99.7 7.6E-18 2.6E-22 168.2 8.3 192 246-486 41-232 (308)
87 2z62_A TOLL-like receptor 4, v 99.7 4.6E-19 1.6E-23 174.3 -5.9 209 302-541 28-237 (276)
88 1pgv_A TMD-1, tropomodulin TMD 99.7 1.2E-15 4.1E-20 138.4 16.2 134 379-512 33-170 (197)
89 1pgv_A TMD-1, tropomodulin TMD 99.7 2.3E-15 7.9E-20 136.5 17.0 131 408-539 34-168 (197)
90 2z62_A TOLL-like receptor 4, v 99.7 1.6E-18 5.6E-23 170.3 -4.4 165 327-513 73-238 (276)
91 1p9a_G Platelet glycoprotein I 99.6 8.1E-18 2.8E-22 166.3 -1.7 176 219-427 32-207 (290)
92 2o6q_A Variable lymphocyte rec 99.6 2.3E-18 7.7E-23 168.7 -7.0 202 303-541 17-218 (270)
93 1p9a_G Platelet glycoprotein I 99.6 3.9E-18 1.3E-22 168.6 -6.3 216 300-556 8-224 (290)
94 3rfs_A Internalin B, repeat mo 99.6 1.7E-17 5.9E-22 162.5 -1.8 14 442-455 204-217 (272)
95 3rfs_A Internalin B, repeat mo 99.6 3.3E-17 1.1E-21 160.5 -0.1 109 383-514 129-237 (272)
96 2o6q_A Variable lymphocyte rec 99.6 9.9E-18 3.4E-22 164.1 -4.0 202 275-512 17-218 (270)
97 1h6t_A Internalin B; cell adhe 99.6 1.9E-15 6.7E-20 149.3 7.7 124 360-513 91-214 (291)
98 1h6t_A Internalin B; cell adhe 99.6 8.7E-16 3E-20 151.8 5.0 171 329-543 45-215 (291)
99 3m19_A Variable lymphocyte rec 99.6 7.9E-17 2.7E-21 155.9 -4.0 169 360-553 36-206 (251)
100 3m19_A Variable lymphocyte rec 99.5 5.5E-17 1.9E-21 157.0 -7.6 180 360-573 15-194 (251)
101 4ezg_A Putative uncharacterize 99.5 6.5E-15 2.2E-19 136.7 6.0 40 411-456 155-194 (197)
102 4ezg_A Putative uncharacterize 99.5 2.4E-15 8.2E-20 139.6 2.9 111 383-513 62-173 (197)
103 2xwt_C Thyrotropin receptor; s 99.5 5E-16 1.7E-20 149.0 -4.6 15 499-513 205-219 (239)
104 1m9s_A Internalin B; cell inva 99.5 9.2E-15 3.1E-19 158.5 4.7 174 299-515 40-213 (605)
105 1m9s_A Internalin B; cell inva 99.5 2.2E-14 7.4E-19 155.6 7.6 172 273-487 42-213 (605)
106 3cvr_A Invasion plasmid antige 99.5 5.7E-15 2E-19 158.4 2.6 187 190-437 59-252 (571)
107 3cvr_A Invasion plasmid antige 99.5 6E-15 2.1E-19 158.2 2.5 194 274-522 59-253 (571)
108 2xwt_C Thyrotropin receptor; s 99.5 3.4E-16 1.2E-20 150.2 -6.9 40 499-542 179-219 (239)
109 1xeu_A Internalin C; cellular 99.4 1.9E-15 6.4E-20 147.0 -4.2 169 330-543 19-187 (263)
110 1xeu_A Internalin C; cellular 99.4 1.2E-14 4.1E-19 141.3 -0.3 169 302-514 19-187 (263)
111 2ra8_A Uncharacterized protein 99.4 2.6E-13 8.8E-18 137.3 8.9 144 359-510 193-341 (362)
112 2ra8_A Uncharacterized protein 99.4 4.9E-13 1.7E-17 135.3 10.3 220 218-482 107-341 (362)
113 1dce_A Protein (RAB geranylger 99.4 2.2E-15 7.4E-20 162.4 -8.0 106 388-514 442-548 (567)
114 2xot_A Amphoterin-induced prot 99.4 7.1E-15 2.4E-19 150.1 -6.0 160 333-517 21-181 (361)
115 2xot_A Amphoterin-induced prot 99.4 2.7E-14 9.3E-19 145.8 -3.0 180 305-512 21-202 (361)
116 3e6j_A Variable lymphocyte rec 99.3 6E-14 2E-18 133.4 -2.8 62 360-429 41-102 (229)
117 1dce_A Protein (RAB geranylger 99.3 1.5E-14 5.1E-19 155.9 -8.1 126 360-506 442-567 (567)
118 2v9t_B SLIT homolog 2 protein 99.3 2.9E-14 9.8E-19 134.7 -6.2 151 333-511 14-164 (220)
119 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 7.8E-17 113.5 6.1 132 359-507 17-148 (149)
120 4b8c_D Glucose-repressible alc 99.3 2.2E-13 7.6E-18 151.4 -0.8 15 246-260 173-187 (727)
121 2ell_A Acidic leucine-rich nuc 99.3 6E-13 2.1E-17 119.9 1.9 137 359-512 24-160 (168)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 5.5E-14 1.9E-18 132.8 -5.5 153 333-512 14-166 (220)
123 2o6s_A Variable lymphocyte rec 99.3 6E-14 2E-18 131.4 -5.3 154 360-545 29-182 (208)
124 3e6j_A Variable lymphocyte rec 99.3 2.3E-13 8E-18 129.3 -1.4 165 360-553 20-186 (229)
125 2v9t_B SLIT homolog 2 protein 99.3 3E-14 1E-18 134.6 -8.2 166 360-553 12-178 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.3 3.1E-13 1.1E-17 127.5 -1.4 155 360-541 12-166 (220)
127 2je0_A Acidic leucine-rich nuc 99.2 1.7E-12 5.8E-17 114.4 2.7 129 387-536 17-148 (149)
128 2ell_A Acidic leucine-rich nuc 99.2 6.8E-13 2.3E-17 119.5 -0.6 135 386-541 23-160 (168)
129 4b8c_D Glucose-repressible alc 99.2 5.3E-13 1.8E-17 148.4 -1.9 154 210-397 216-369 (727)
130 1ds9_A Outer arm dynein; leuci 99.2 4.3E-13 1.5E-17 124.4 -3.4 16 386-401 92-107 (198)
131 2o6s_A Variable lymphocyte rec 99.2 4.4E-13 1.5E-17 125.4 -3.9 155 360-542 8-162 (208)
132 1ds9_A Outer arm dynein; leuci 99.2 5.6E-13 1.9E-17 123.6 -3.4 112 382-513 43-154 (198)
133 1a9n_A U2A', U2A'; complex (nu 99.2 5.1E-12 1.7E-16 114.7 1.8 112 388-513 43-154 (176)
134 4ay9_X Follicle-stimulating ho 99.2 6.9E-14 2.3E-18 142.2 -12.7 104 193-315 12-117 (350)
135 1a9n_A U2A', U2A'; complex (nu 99.1 1.3E-11 4.5E-16 111.9 3.1 110 360-483 43-152 (176)
136 4ay9_X Follicle-stimulating ho 99.1 3.8E-14 1.3E-18 144.1 -17.1 238 249-538 12-256 (350)
137 3sb4_A Hypothetical leucine ri 99.0 7.1E-12 2.4E-16 126.0 -3.6 102 414-534 225-327 (329)
138 3sb4_A Hypothetical leucine ri 99.0 2.2E-12 7.7E-17 129.7 -7.3 279 219-548 26-317 (329)
139 1w8a_A SLIT protein; signaling 99.0 1.1E-11 3.7E-16 114.3 -4.6 89 412-512 51-139 (192)
140 1w8a_A SLIT protein; signaling 99.0 1.5E-11 5E-16 113.4 -3.8 131 390-543 11-141 (192)
141 2wfh_A SLIT homolog 2 protein 99.0 2.1E-11 7.2E-16 112.3 -2.9 38 470-511 101-138 (193)
142 2wfh_A SLIT homolog 2 protein 99.0 3.2E-11 1.1E-15 111.1 -2.1 121 415-553 31-152 (193)
143 3e4g_A ATP synthase subunit S, 98.9 1.2E-09 4.1E-14 97.1 6.3 93 415-515 61-156 (176)
144 2o6r_A Variable lymphocyte rec 98.9 8.5E-11 2.9E-15 106.7 -2.3 130 360-512 8-137 (177)
145 3e4g_A ATP synthase subunit S, 98.9 7.2E-10 2.5E-14 98.5 3.7 91 388-486 62-155 (176)
146 2o6r_A Variable lymphocyte rec 98.9 7.4E-11 2.5E-15 107.1 -3.1 87 415-513 28-114 (177)
147 3g39_A Variable lymphocyte rec 98.6 3E-09 1E-13 95.6 -0.9 37 360-400 31-67 (170)
148 3g39_A Variable lymphocyte rec 98.6 4.8E-09 1.6E-13 94.2 0.1 122 360-500 10-133 (170)
149 2r9u_A Variable lymphocyte rec 98.6 6.1E-09 2.1E-13 93.9 -0.7 104 390-512 15-118 (174)
150 2r9u_A Variable lymphocyte rec 98.5 1.2E-08 4.3E-13 91.9 -0.8 85 360-456 34-118 (174)
151 4fdw_A Leucine rich hypothetic 98.1 1.8E-08 6.1E-13 103.6 -9.8 272 245-572 112-384 (401)
152 3rw6_A Nuclear RNA export fact 98.1 6.4E-06 2.2E-10 78.7 8.5 18 384-401 193-210 (267)
153 2ifg_A High affinity nerve gro 98.1 4.9E-07 1.7E-11 91.2 0.8 85 359-456 31-116 (347)
154 2ifg_A High affinity nerve gro 98.1 5E-07 1.7E-11 91.1 -0.0 104 362-484 11-116 (347)
155 4fdw_A Leucine rich hypothetic 98.1 4.2E-08 1.4E-12 100.8 -8.2 270 217-540 112-382 (401)
156 3rw6_A Nuclear RNA export fact 97.8 3.4E-05 1.2E-09 73.7 8.0 88 384-477 167-257 (267)
157 4fs7_A Uncharacterized protein 97.7 2.8E-08 9.6E-13 102.3 -17.3 219 270-538 158-376 (394)
158 4fs7_A Uncharacterized protein 97.7 5.6E-08 1.9E-12 100.1 -15.5 218 297-568 157-376 (394)
159 4gt6_A Cell surface protein; l 97.1 1.5E-05 5.2E-10 81.7 -5.1 315 163-541 65-391 (394)
160 4gt6_A Cell surface protein; l 96.8 7.9E-05 2.7E-09 76.3 -2.7 296 158-511 83-390 (394)
161 3rfe_A Platelet glycoprotein I 90.1 0.032 1.1E-06 46.7 -1.5 69 474-554 11-82 (130)
162 3rfe_A Platelet glycoprotein I 84.0 0.28 9.5E-06 40.8 0.8 37 472-512 32-68 (130)
163 4h09_A Hypothetical leucine ri 83.6 0.035 1.2E-06 56.0 -6.0 15 185-199 64-78 (379)
164 4h09_A Hypothetical leucine ri 77.0 0.33 1.1E-05 48.7 -1.3 35 469-507 284-318 (379)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6e-45 Score=387.45 Aligned_cols=432 Identities=18% Similarity=0.242 Sum_probs=275.0
Q ss_pred HHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCC-CccEEEccCCCCCh
Q 007526 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIGD 232 (600)
Q Consensus 154 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~ 232 (600)
...++..+++|++|+|++|.+++.+...++..+..+++|++|++++|.+++.+...+...+.... +|++|++++|.+++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 44445566667777777777766666666666666677777777777666666655555443322 57777777777766
Q ss_pred HHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhc-CCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccC
Q 007526 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311 (600)
Q Consensus 233 ~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 311 (600)
.+...++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++.+...++..+..+++|++|++++
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 6666666666666677777777777666666666555432 346777777777776666666666666667777777777
Q ss_pred CCCChHHHHHHHHHhh-cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHH-hCCCC
Q 007526 312 NYGGALGANALAKGLE-GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKSL 389 (600)
Q Consensus 312 n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L 389 (600)
|.+++.+...++..+. ..++|++|++++|.+++.++..+...+. ..++|++|++++|.+++.+...+...+. .+++|
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 7666666655555544 2446777777777766666555555554 2336777777777666666555554443 35667
Q ss_pred cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCChhHHHHHHHHHh
Q 007526 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLK 468 (600)
Q Consensus 390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (600)
++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+... ++|++|++++|.+++.+...+...+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 77777777777666666666666666777777777777666666666655544 46777777777776666666666666
Q ss_pred hCCCccEEeccCcCCChhHHHHHHHHHhh-CCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHH
Q 007526 469 FHGNINTLKLGWCQIGASGAEFVADMLRY-NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547 (600)
Q Consensus 469 ~~~~L~~L~l~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~ 547 (600)
.+++|++|++++|.+++.++..+.+.+.. +++|++|++++|.+++.+...+...+.. +++|++|++++|+|++.+...
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~ 417 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGILQ 417 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHHH
Confidence 66777777777777766666666665543 5567777777777776666666555543 266777777777777666666
Q ss_pred HHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHh
Q 007526 548 IAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQI 588 (600)
Q Consensus 548 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l 588 (600)
+...+.... ..++.|++.++.+.....+.+..+.+..+.+
T Consensus 418 l~~~l~~~~-~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l 457 (461)
T 1z7x_W 418 LVESVRQPG-CLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 457 (461)
T ss_dssp HHHHHTSTT-CCCCEEECTTCCCCHHHHHHHHHHHHHCTTS
T ss_pred HHHHhccCC-cchhheeecccccCHHHHHHHHHHhccCCCc
Confidence 666554322 1366677666666665555555544444433
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.9e-43 Score=374.50 Aligned_cols=415 Identities=26% Similarity=0.367 Sum_probs=375.6
Q ss_pred CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (600)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (600)
.+++++|+|+++.+++.....+ +..+++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHH---HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHH---HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 3578999999999998775443 4446899999999999999999999999999999999999999999988877777
Q ss_pred HHhhCC-CcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh-CCCccEEEccCCCCChHH
Q 007526 241 ILVDNA-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALG 318 (600)
Q Consensus 241 ~l~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~ 318 (600)
.+.... +|++|++++|++++.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++..+
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 655433 799999999999999888999999999999999999999998888888877654 678999999999999999
Q ss_pred HHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCC
Q 007526 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (600)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (600)
...++..+..+++|++|++++|.+++.++..+...+....++|++|++++|.+++.++..++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 99999999999999999999999999999888888876677999999999999999988899999999999999999999
Q ss_pred CChHHHHHHHHHhh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC-CCccEE
Q 007526 399 IGDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTL 476 (600)
Q Consensus 399 l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L 476 (600)
+++.+...+...+. .+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+... ++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 99999888887765 4799999999999999999999999999999999999999999999988888877654 699999
Q ss_pred eccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCc
Q 007526 477 KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE 556 (600)
Q Consensus 477 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~ 556 (600)
++++|.+++.+...++..+..+++|++|++++|.+++.++..+.+.+...+++|++|++++|+|++.+...+...+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999887654579999999999999999999998888888
Q ss_pred ccceeEEEccCCCCchhHHHHHHH
Q 007526 557 DVAVTSLNLANNFLTKFGQVISLF 580 (600)
Q Consensus 557 ~~~L~~L~l~~n~l~~~~~~~~~~ 580 (600)
. |++|++++|++++.+...+..
T Consensus 399 ~--L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 399 S--LRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp C--CCEEECCSSSCCHHHHHHHHH
T ss_pred C--ccEEECCCCCCCHHHHHHHHH
Confidence 6 999999999999998877754
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=1.2e-31 Score=277.83 Aligned_cols=307 Identities=21% Similarity=0.274 Sum_probs=170.0
Q ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC------hHHHHHHHHHH
Q 007526 197 FAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELL 270 (600)
Q Consensus 197 Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l 270 (600)
+..+.+++.++..+...+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+. ..++..++..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 344455555566666666666666666666666666655555555555666666666665333 23445555556
Q ss_pred hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH
Q 007526 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (600)
Q Consensus 271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 350 (600)
..+++|++|+|++|.+++.++..++..+..+++|++|+|++|.++..+...++..+..+. .+ .+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~~--------~~ 154 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------VN--------KK 154 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------HH--------HH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------hh--------hh
Confidence 666666666666666666666666666666666666666666665555555554444330 00 00
Q ss_pred HHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH-HhhcCCCccEEEccCCCCCh
Q 007526 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHS 429 (600)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~ 429 (600)
. ...++|++|++++|.+++.++..+...+..+++|++|++++|.+++.|+..+.. .+..+++|++|+|++|.+++
T Consensus 155 ~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 155 A----KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp H----HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred c----ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 0 000245555555555544444444455555555555555555555555554444 55555555556665555555
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh--CCCccEEeccCcCCChhHHHHHHHHH-hhCCCccEEEc
Q 007526 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF--HGNINTLKLGWCQIGASGAEFVADML-RYNNTISILDL 506 (600)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~--~~~L~~L~l~~n~i~~~~~~~l~~~l-~~~~~L~~L~L 506 (600)
.+...++..+..+++|++|+|++|.|++.+...++..+.. +++|++|++++|.+++.+...+...+ .++++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 5555555555555566666666666655555555555543 55566666666666555555555544 33566666666
Q ss_pred cCCCCChHH--HHHHHHHH
Q 007526 507 RANGLRDEG--AKCLAQSF 523 (600)
Q Consensus 507 s~n~i~~~~--~~~l~~~l 523 (600)
++|.+++.+ ...+...+
T Consensus 311 ~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 311 NGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp TTSBSCTTSHHHHHHHHHH
T ss_pred cCCcCCcchhHHHHHHHHh
Confidence 666666554 34444444
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=3e-31 Score=274.92 Aligned_cols=288 Identities=21% Similarity=0.244 Sum_probs=177.6
Q ss_pred cCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCC------hHHHHHHHHHH
Q 007526 169 MSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG------DEGVKCLCDIL 242 (600)
Q Consensus 169 Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~------~~~~~~l~~~l 242 (600)
+..+.+++.++..+...+..+++|++|+|++|.++..+...++..+..+++|++|+|++|.+. ..++..++..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 344466777777777788888888888888888888888888777778888888888886543 24666777777
Q ss_pred hhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhC---------CCccEEEccCCC
Q 007526 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN---------STIRSLHLNGNY 313 (600)
Q Consensus 243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------~~L~~L~L~~n~ 313 (600)
..+++|++|+|++|.++..+...++..+..+++|++|+|++|.+++.+...++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 78888888888888888877777777788888888888888888777777777766665 666666666666
Q ss_pred CChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHH-hhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEE
Q 007526 314 GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392 (600)
Q Consensus 314 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 392 (600)
++..+...++..+..+++|++|++++|.+++.++..+.. .+. ..++|+.|+|++|.+++.+...++..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 665555555555666666666666666666555544443 222 222444444444444444444444444444444444
Q ss_pred EccCCCCChHHHHHHHHHhhc--CCCccEEEccCCCCChHHHHHHHHHh-hcCCCcCEEECcCCCCCh
Q 007526 393 NLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIHSKGASAIARVL-KDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 393 ~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~ 457 (600)
+|++|.+++.+...++..+.. +++|++|++++|.++..+...++..+ .++++|++|++++|++++
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 444444444444444444422 34444444444444444333333333 223444444444444433
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=5.9e-31 Score=288.59 Aligned_cols=391 Identities=16% Similarity=0.187 Sum_probs=289.2
Q ss_pred HHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCC-CCHHHHHHHHHHHhcCCCccEEEccCCCC
Q 007526 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (600)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 230 (600)
..+..+...+++|++|+|++|.+++.....+...+. .+|++|+|++|. ++..++.. ....+++|++|+|++|.+
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~ 176 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDGLLS---IVTHCRKIKTLLMEESSF 176 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEEEESCEEEEHHHHHH---HHHHCTTCSEEECTTCEE
T ss_pred HHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEECcCCCCcCHHHHHH---HHhhCCCCCEEECccccc
Confidence 455667778999999999999999988777766532 349999999987 66554444 446789999999999988
Q ss_pred ChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEcc
Q 007526 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (600)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (600)
++.+...+...+..+++|++|++++|.++......+...+.++++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus 177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEEC
T ss_pred cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhccc
Confidence 7766555667777889999999999998744445677778888999999999998753 55667788999999887
Q ss_pred CCCCC----------------------hHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcC
Q 007526 311 GNYGG----------------------ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (600)
Q Consensus 311 ~n~l~----------------------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (600)
+.... ......++..+..+++|++|++++|.+++.++..+. ...++|+.|+++
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~----~~~~~L~~L~L~- 326 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI----QKCPNLEVLETR- 326 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH----TTCTTCCEEEEE-
T ss_pred ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH----HhCcCCCEEecc-
Confidence 43211 011122334456778899999999998877665443 344589999998
Q ss_pred CCCChhhHHHHHHHHHhCCCCcEEEcc-----------CCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 369 NSISAKGAFHVAEYIKNCKSLLWINLY-----------MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (600)
Q Consensus 369 n~i~~~~~~~l~~~l~~~~~L~~L~Ls-----------~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 437 (600)
+.+.+.+ +......+++|++|+++ .|.+++.++..+. ..+++|++|+++.|.+++.+...+..
T Consensus 327 ~~~~~~~---l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 327 NVIGDRG---LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp GGGHHHH---HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CccCHHH---HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHh
Confidence 4555543 34445778999999999 4688887765543 34788999999889999887766655
Q ss_pred HhhcCCCcCEEECc----CCCCChhHH-HHHHHHHhhCCCccEEeccCcC--CChhHHHHHHHHHhhCCCccEEEccCCC
Q 007526 438 VLKDNSVITSLDLA----YNPIGADGA-KALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLRANG 510 (600)
Q Consensus 438 ~l~~~~~L~~L~Ls----~n~i~~~~~-~~l~~~l~~~~~L~~L~l~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 510 (600)
. +++|++|+++ .|.+++... ..+...+..+++|++|++++|. +++.....+.. .+++|++|++++|.
T Consensus 401 ~---~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 401 Y---LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---YSPNVRWMLLGYVG 474 (592)
T ss_dssp H---CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH---SCTTCCEEEECSCC
T ss_pred h---CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH---hCccceEeeccCCC
Confidence 3 5899999996 567776311 1233345668899999998654 77776665543 46899999999999
Q ss_pred CChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526 511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578 (600)
Q Consensus 511 i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 578 (600)
+++.+...+...+ ++|++|++++|.|++.++..+...+ + .|++|+|++|++++.+...+
T Consensus 475 l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~~l---~--~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 475 ESDEGLMEFSRGC----PNLQKLEMRGCCFSERAIAAAVTKL---P--SLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp SSHHHHHHHHTCC----TTCCEEEEESCCCBHHHHHHHHHHC---S--SCCEEEEESCBCCTTCTTGG
T ss_pred CCHHHHHHHHhcC----cccCeeeccCCCCcHHHHHHHHHhc---C--ccCeeECcCCcCCHHHHHHH
Confidence 9988766654432 6799999999999887777665433 3 49999999999988776544
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=3.9e-30 Score=282.23 Aligned_cols=384 Identities=16% Similarity=0.192 Sum_probs=267.7
Q ss_pred HHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccC-CCCHHHHHHHHHHHhcCCCccEEEccCCCC
Q 007526 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (600)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 230 (600)
..+..+...+++|++|+|++|.+++..+..+... +++|++|++++| .+++.++..+ ...+++|++|++++|.+
T Consensus 95 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i 168 (594)
T 2p1m_B 95 PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDV 168 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEE
T ss_pred HHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCcc
Confidence 3455667788999999999999988876665533 689999999999 6776555444 35678899999999887
Q ss_pred ChHHHHHHHHHHhhCCCcCEEEeecCC--CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEE
Q 007526 231 GDEGVKCLCDILVDNAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLH 308 (600)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 308 (600)
++.+...+......+++|++|++++|. ++... +......+++|++|++++|.. ...++..+..+++|++|+
T Consensus 169 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVP----LEKLATLLQRAPQLEELG 241 (594)
T ss_dssp ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH---HHHHHHHCTTCCEEECCTTSC----HHHHHHHHHHCTTCSEEE
T ss_pred CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH---HHHHHHhCCCCcEEecCCCCc----HHHHHHHHhcCCcceEcc
Confidence 765554455555567889999999886 55443 444455578899999988832 133666667788888887
Q ss_pred ccCCC--CChHHHHHHHHHh------------------------hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCccc
Q 007526 309 LNGNY--GGALGANALAKGL------------------------EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362 (600)
Q Consensus 309 L~~n~--l~~~~~~~l~~~l------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~ 362 (600)
++++. +.......+...+ ..+++|++|++++|.+++.++..+.. ..++|+
T Consensus 242 l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~----~~~~L~ 317 (594)
T 2p1m_B 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC----QCPKLQ 317 (594)
T ss_dssp CSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT----TCTTCC
T ss_pred cccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh----cCCCcC
Confidence 66553 2222222222222 24567888888888877765554432 345788
Q ss_pred EEECcCCCCChhhHHHHHHHHHhCCCCcEEEc---------cCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526 363 VLDIGNNSISAKGAFHVAEYIKNCKSLLWINL---------YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (600)
Q Consensus 363 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (600)
.|++++| +++.++ ......+++|++|++ ..+.+++.++..+.. .+++|++|++..|.+++.+..
T Consensus 318 ~L~l~~~-~~~~~l---~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 318 RLWVLDY-IEDAGL---EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp EEEEEGG-GHHHHH---HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHH
T ss_pred EEeCcCc-cCHHHH---HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHH
Confidence 8888887 554433 333456888888888 335778776655543 367888888888888887766
Q ss_pred HHHHHhhcCCCcCEEECc--C----CCCC----hhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccE
Q 007526 434 AIARVLKDNSVITSLDLA--Y----NPIG----ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503 (600)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls--~----n~i~----~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~ 503 (600)
.+.. .+++|++|+++ + +.++ +.++. ..+..+++|++|++++ .+++.+...+.. .+++|++
T Consensus 391 ~l~~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~ 460 (594)
T 2p1m_B 391 TIAR---NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG---AIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEM 460 (594)
T ss_dssp HHHH---HCTTCCEEEEEESSTTCCCTTTCCCTHHHHH---HHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCE
T ss_pred HHHh---hCCCcceeEeecccCCCcccccCCchhhHHH---HHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccE
Confidence 5543 35888999888 4 5666 44433 3356778899999977 788877766655 3588999
Q ss_pred EEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578 (600)
Q Consensus 504 L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 578 (600)
|++++|.+++.++..+...+ ++|++|++++|.+++.+...+...+. .|++|++++|+++..+...+
T Consensus 461 L~L~~~~i~~~~~~~l~~~~----~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGC----DSLRKLEIRDCPFGDKALLANASKLE-----TMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHC----TTCCEEEEESCSCCHHHHHHTGGGGG-----GSSEEEEESSCCBHHHHHHH
T ss_pred eeccCCCCcHHHHHHHHhcC----CCcCEEECcCCCCcHHHHHHHHHhCC-----CCCEEeeeCCCCCHHHHHHH
Confidence 99999999888887775543 67999999999888777665543322 38999999998877666544
No 7
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=1.9e-30 Score=266.28 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=136.9
Q ss_pred cCEEEeecCCCChHHHHHHHHHHhcCC-CccEEeecCCCCChhhHHHHHHHHhhC-CCccEEEccCCCCChHHHHHHHHH
Q 007526 248 VERLQLSSVDLRDEGAKAIAELLKNNS-ILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG 325 (600)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~ 325 (600)
|++|+|++|.+++.+...+...+..++ +|++|+|++|.+++.+...+...+... ++|++|++++|.++..+...+...
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 444444444444444433444444444 444444444444444444444433333 444444444444444444444444
Q ss_pred hhcC-CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCC-CCcEEEccCCCCChHH
Q 007526 326 LEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGDEG 403 (600)
Q Consensus 326 l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~ 403 (600)
+..+ ++|++|++++|.+++.+...+...+.....+|++|++++|.+++.+...++..+...+ +|++|+|++|.+++.+
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 4444 4455555555555444444444433321224555555555555544444555555444 5555555555555555
Q ss_pred HHHHHHHhhcC-CCccEEEccCCCCChHHHHHHHHHhhc-CCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526 404 AEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (600)
Q Consensus 404 ~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 481 (600)
...+...+..+ ++|++|++++|.|++.+...++..+.. +++|++|+|++|.|++.+...+...+..+++|++|++++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 54555555544 255555555555555555555555544 2356666666666655555555555555556666666666
Q ss_pred C---CChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526 482 Q---IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (600)
Q Consensus 482 ~---i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 522 (600)
. +++.....+...+..+++|++||+++|.+.+..+..+...
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~ 307 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH
Confidence 5 4444444555555555666666666666665544444443
No 8
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=4.5e-30 Score=263.49 Aligned_cols=288 Identities=19% Similarity=0.220 Sum_probs=148.8
Q ss_pred EEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCC-CccEEEccCCCCChHHHHHHHHHHhhC
Q 007526 167 VDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIGDEGVKCLCDILVDN 245 (600)
Q Consensus 167 L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 245 (600)
.+++.+.+... ++..+...++|++|+|++|.+++.+...+...+..++ +|++|+|++|.+++.+...+...+...
T Consensus 3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 44555555432 3333444445666666666666555555555555555 566666666666655555555555554
Q ss_pred -CCcCEEEeecCCCChHHHHHHHHHHhcC-CCccEEeecCCCCChhhHHHHHHHHhh-CCCccEEEccCCCCChHHHHHH
Q 007526 246 -AGVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANAL 322 (600)
Q Consensus 246 -~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l 322 (600)
++|++|+|++|.+++.+...+...+..+ ++|++|++++|.+++.+...+...+.. +++|++|++++|.+++.+...+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 5566666666666555555555555555 556666666666655555555554444 2355555555555555555555
Q ss_pred HHHhhcCC-CCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhC-CCCcEEEccCCCCC
Q 007526 323 AKGLEGNK-SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIG 400 (600)
Q Consensus 323 ~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~ 400 (600)
+..+...+ +|++|++++|.+++.+...+...+....++|++|++++|.+++.+...++..+... ++|++|+|++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 55444443 55555555555554444444444432222455555555555554444444444442 24555555555555
Q ss_pred hHHHHHHHHHhhcCCCccEEEccCCC---CChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526 401 DEGAEKIADALKQNRTITTIDLGGNN---IHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (600)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (600)
+.+...+...+..+++|++|++++|. ++..+...+...+..+++|++||+++|++.+.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 44444444444444445555555444 44444444444444444444444444444444
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2e-29 Score=276.50 Aligned_cols=407 Identities=14% Similarity=0.176 Sum_probs=297.9
Q ss_pred HHHHHhCCCccEEEcCCCCC-----------CHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEE
Q 007526 155 NEFAKELRAFSSVDMSGRNF-----------GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223 (600)
Q Consensus 155 ~~~~~~~~~L~~L~Ls~~~l-----------~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L 223 (600)
..++..+++|++|+|+++.. .......+......+++|++|+|++|.+++.....+...+. .+|++|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L 143 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETL 143 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEE
Confidence 35677899999999987522 11111123344446899999999999999888887776532 249999
Q ss_pred EccCCC-CChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCC
Q 007526 224 NLSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302 (600)
Q Consensus 224 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 302 (600)
+|++|. ++..+ +......+++|++|+|++|.+++.+...+......+++|++|++++|.+++.....+...+..++
T Consensus 144 ~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 999986 55544 34444568999999999999877665567777778899999999999987555566777777899
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC----------------------chHHHHHHHhhhcCCCc
Q 007526 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG----------------------DEGIRALMSGLSSRKGK 360 (600)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~----------------------~~~~~~l~~~l~~~~~~ 360 (600)
+|++|++++|.+... +..+..+++|++|+++..... ......+...+ ...++
T Consensus 221 ~L~~L~L~~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~~ 294 (592)
T 3ogk_B 221 SLVSVKVGDFEILEL-----VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PFAAQ 294 (592)
T ss_dssp TCCEEECSSCBGGGG-----HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG-GGGGG
T ss_pred CCcEEeccCccHHHH-----HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH-hhcCC
Confidence 999999999987653 345667888888888742111 00000111111 23458
Q ss_pred ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEcc-----------CCCCCh
Q 007526 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG-----------GNNIHS 429 (600)
Q Consensus 361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-----------~n~l~~ 429 (600)
|++|++++|.+++.+. ...+..+++|++|+++ +.+.+.++..+. ..+++|++|+++ .+.+++
T Consensus 295 L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 295 IRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp CCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred CcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEeecCccccccccccCccCH
Confidence 9999999999887643 3456889999999999 667776655443 457899999999 368888
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc----CcCCChhHHH-HHHHHHhhCCCccEE
Q 007526 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG----WCQIGASGAE-FVADMLRYNNTISIL 504 (600)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~----~n~i~~~~~~-~l~~~l~~~~~L~~L 504 (600)
.+...+. ..+++|++|+++.|.+++.+...+. ..+++|++|+++ .+.+++.... .+...+..+++|++|
T Consensus 368 ~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 368 RGLIALA---QGCQELEYMAVYVSDITNESLESIG---TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp HHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHH---hhCccCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 7766554 3479999999999999988766654 357899999997 5577764211 244446668999999
Q ss_pred EccCC--CCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHH
Q 007526 505 DLRAN--GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFS 582 (600)
Q Consensus 505 ~Ls~n--~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 582 (600)
++++| .+++.+...+...+ ++|++|++++|++++.+...+.. .++ +|++|+|++|++++.+...+.
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~---~~~--~L~~L~l~~n~l~~~~~~~~~--- 509 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYS----PNVRWMLLGYVGESDEGLMEFSR---GCP--NLQKLEMRGCCFSERAIAAAV--- 509 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSC----TTCCEEEECSCCSSHHHHHHHHT---CCT--TCCEEEEESCCCBHHHHHHHH---
T ss_pred EEecCCCCccHHHHHHHHHhC----ccceEeeccCCCCCHHHHHHHHh---cCc--ccCeeeccCCCCcHHHHHHHH---
Confidence 99865 49999888777643 77999999999999877766543 333 499999999998776655443
Q ss_pred HHHHHhhhhhHhhhh
Q 007526 583 FLLHQIKSLFHSWCI 597 (600)
Q Consensus 583 ~l~~~l~~l~~~~c~ 597 (600)
...+.++.|++++|.
T Consensus 510 ~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHCSSCCEEEEESCB
T ss_pred HhcCccCeeECcCCc
Confidence 234678888888874
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=1.7e-27 Score=261.22 Aligned_cols=373 Identities=15% Similarity=0.193 Sum_probs=256.0
Q ss_pred HHHHHHHhCCCccEEEcCCC-CCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCC--
Q 007526 153 TLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-- 229 (600)
Q Consensus 153 ~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-- 229 (600)
.+..+.+.+++|++|+|++| .+++.++..+ +..+++|++|++++|.+++.+...+......+++|++|++++|.
T Consensus 121 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 197 (594)
T 2p1m_B 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSC
T ss_pred HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCc
Confidence 34444445777888888777 5565554333 33467777777777776554444444444456677777777765
Q ss_pred CChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC--CChhhHHH--------------
Q 007526 230 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTS-------------- 293 (600)
Q Consensus 230 l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~-------------- 293 (600)
++...+ ...+..+++|++|++++|.- . ..+...+..+++|++|+++++. +....+..
T Consensus 198 ~~~~~l---~~l~~~~~~L~~L~L~~~~~-~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 198 VSFSAL---ERLVTRCPNLKSLKLNRAVP-L---EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp CCHHHH---HHHHHHCTTCCEEECCTTSC-H---HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred CCHHHH---HHHHHhCCCCcEEecCCCCc-H---HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 444433 33334467777777777621 1 1144555556666666655442 22222222
Q ss_pred ----------HHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccE
Q 007526 294 ----------LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (600)
Q Consensus 294 ----------l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 363 (600)
++..+..+++|++|++++|.+++.+. ...+..+++|++|++++| +++.++..+...+ ++|++
T Consensus 271 s~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l---~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~----~~L~~ 342 (594)
T 2p1m_B 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL---VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC----KDLRE 342 (594)
T ss_dssp ECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH---HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC----TTCCE
T ss_pred cCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH---HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC----CCCCE
Confidence 22223356889999999999876554 344668899999999998 7666666665433 48999
Q ss_pred EEC---------cCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEcc--C----CCCC
Q 007526 364 LDI---------GNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG--G----NNIH 428 (600)
Q Consensus 364 L~L---------s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~--~----n~l~ 428 (600)
|++ ..+.+++.+...+ ...+++|++|+++.|.+++.+...+.. .+++|++|+++ + +.++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHH---HHHCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESSTTCCCTTT
T ss_pred EEEecCcccccccCCCCCHHHHHHH---HHhchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeecccCCCccccc
Confidence 999 4457887765544 356899999999999999987665543 36899999999 4 5777
Q ss_pred ----hHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEE
Q 007526 429 ----SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504 (600)
Q Consensus 429 ----~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L 504 (600)
+.+.. ..+..+++|++|++++ .+++.++..+.. .+++|++|++++|.+++.+...+.. .+++|++|
T Consensus 417 ~~~~~~~~~---~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~---~~~~L~~L 486 (594)
T 2p1m_B 417 LEPLDIGFG---AIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS---GCDSLRKL 486 (594)
T ss_dssp CCCTHHHHH---HHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH---HCTTCCEE
T ss_pred CCchhhHHH---HHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh---cCCCcCEE
Confidence 44543 4456689999999988 788887776654 4789999999999999887776644 47999999
Q ss_pred EccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCC
Q 007526 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568 (600)
Q Consensus 505 ~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n 568 (600)
++++|.+++.++..+...+ ++|++|++++|++++.+...+...+ +. ++...+..+
T Consensus 487 ~L~~n~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~l~~~l---p~--l~i~~~~~~ 541 (594)
T 2p1m_B 487 EIRDCPFGDKALLANASKL----ETMRSLWMSSCSVSFGACKLLGQKM---PK--LNVEVIDER 541 (594)
T ss_dssp EEESCSCCHHHHHHTGGGG----GGSSEEEEESSCCBHHHHHHHHHHC---TT--EEEEEECSS
T ss_pred ECcCCCCcHHHHHHHHHhC----CCCCEEeeeCCCCCHHHHHHHHHhC---CC--CEEEEecCC
Confidence 9999999988876655433 7899999999999888887765433 33 544444444
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.3e-29 Score=255.76 Aligned_cols=305 Identities=22% Similarity=0.244 Sum_probs=174.6
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (600)
.++++++|+++++.+.+. +.+..+++|++|++++|.++.... +..+++|++|++++|.+++.
T Consensus 42 ~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------
T ss_pred hcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------
Confidence 567888888888887652 236667888888888888764321 56677888888888877653
Q ss_pred HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (600)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 319 (600)
..+..+++|++|++++|.++.... +..+++|++|++++|..... ...+..+++|++|++++|.+.....
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred hHHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh
Confidence 235566778888887777766321 45567777777777743211 1124456677777777766654332
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (600)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (600)
+..+++|++|++++|.+.+... + ...++|+.|++++|.++.. .. +..+++|++|++++|.+
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~-----~~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDISP------L-ASLTSLHYFTAYVNQITDI-----TP-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred ------hccCCCCCEEEccCCccccccc------c-cCCCccceeecccCCCCCC-----ch-hhcCCcCCEEEccCCcc
Confidence 4456666666666666654321 1 2233566666666666552 11 45566666666666665
Q ss_pred ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (600)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 479 (600)
++.. . +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 234 ~~~~-----~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 234 TDLS-----P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLN 295 (347)
T ss_dssp CCCG-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred CCCc-----c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECc
Confidence 5521 1 44556666666666655542 2244445666666666655543 123445555555555
Q ss_pred CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
+|.+++..+..+. .+++|++|++++|.+++..+ +... ++|++|++++|.|+
T Consensus 296 ~n~l~~~~~~~l~----~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVIG----GLTNLTTLFLSQNHITDIRP--LASL-----SKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHHH----TCTTCSEEECCSSSCCCCGG--GGGC-----TTCSEESSSCC---
T ss_pred CCcCCCcChhHhh----ccccCCEEEccCCccccccC--hhhh-----hccceeehhhhccc
Confidence 5555554443332 23555555555555554322 1111 45555555555543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.1e-32 Score=310.61 Aligned_cols=259 Identities=23% Similarity=0.266 Sum_probs=177.4
Q ss_pred CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (600)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (600)
++|++|++++|.+++ .++..+..+++|++|++++|.++... +..+..+++|++|++++|.+.+... ..
T Consensus 394 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p----~~ 461 (768)
T 3rgz_A 394 NTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTI----PSSLGSLSKLRDLKLWLNMLEGEIP----QE 461 (768)
T ss_dssp CCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCC----CGGGGGCTTCCEEECCSSCCCSCCC----GG
T ss_pred CCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCcc----cHHHhcCCCCCEEECCCCcccCcCC----HH
Confidence 456666666666542 23445667778888888887765322 2345677888888888887765322 22
Q ss_pred hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (600)
Q Consensus 354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (600)
+ ...++|++|++++|.++.. ++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.++..
T Consensus 462 ~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 529 (768)
T 3rgz_A 462 L-MYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN--- 529 (768)
T ss_dssp G-GGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE---
T ss_pred H-cCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc---
Confidence 2 2334788888888888754 566677888888888888888754 555677788888888888888753
Q ss_pred HHHHHhhcCCCcCEEECcCCCCChhHHHHHHH------------------------------------------------
Q 007526 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSE------------------------------------------------ 465 (600)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------------------------------------------------ 465 (600)
++..+..+++|++|++++|++...-...+..
T Consensus 530 -~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 530 -IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp -CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred -CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 3445666788888888888664221111100
Q ss_pred ------------------HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcC
Q 007526 466 ------------------VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN 527 (600)
Q Consensus 466 ------------------~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n 527 (600)
.+..+++|++|++++|++++..+.. +..++.|+.|+|++|.+++..+..+...
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~g~ip~~l~~L----- 679 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDL----- 679 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGC-----
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHH----HhccccCCEEeCcCCccCCCCChHHhCC-----
Confidence 1123467888889888887664433 4556889999999998887656556554
Q ss_pred ccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526 528 EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (600)
Q Consensus 528 ~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 572 (600)
++|++|||++|++++..+..+..+.. |++|||++|+++.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~------L~~L~ls~N~l~g 718 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTM------LTEIDLSNNNLSG 718 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCC------CSEEECCSSEEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCCCC------CCEEECcCCcccc
Confidence 77999999999988877766654433 8899999998764
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.9e-28 Score=250.06 Aligned_cols=305 Identities=23% Similarity=0.264 Sum_probs=245.1
Q ss_pred CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (600)
Q Consensus 189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (600)
+++|++|++++|.++... .+..+++|++|++++|.+++.. . +..+++|++|++++|.++.. .
T Consensus 43 l~~L~~L~l~~~~i~~~~------~~~~~~~L~~L~l~~n~i~~~~-----~-~~~l~~L~~L~L~~n~i~~~------~ 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ------GIEYLTNLEYLNLNGNQITDIS-----P-LSNLVKLTNLYIGTNKITDI------S 104 (347)
T ss_dssp HTTCSEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCC------G
T ss_pred cccccEEEEeCCccccch------hhhhcCCccEEEccCCccccch-----h-hhcCCcCCEEEccCCcccCc------h
Confidence 489999999999987531 2567899999999999998742 2 66789999999999999874 2
Q ss_pred HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHH
Q 007526 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (600)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 348 (600)
.+..+++|++|++++|.+++... +..+++|++|++++|...... ..+..+++|++|++++|.+.+...
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~- 172 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTESKVKDVTP- 172 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred HHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEecCCCcCCchh-
Confidence 36678999999999999976321 668999999999999533211 236789999999999999876432
Q ss_pred HHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (600)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (600)
+ ...++|+.|++++|.+... +. +..+++|++|++++|.+.+.. . +..+++|++|++++|.++
T Consensus 173 -----~-~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 173 -----I-ANLTDLYSLSLNYNQIEDI-----SP-LASLTSLHYFTAYVNQITDIT-----P-VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp -----G-GGCTTCSEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCCC
T ss_pred -----h-ccCCCCCEEEccCCccccc-----cc-ccCCCccceeecccCCCCCCc-----h-hhcCCcCCEEEccCCccC
Confidence 2 3455899999999999873 22 778999999999999998742 1 677899999999999998
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccC
Q 007526 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (600)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 508 (600)
.... +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 235 ~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 235 DLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCS
T ss_pred CCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcC
Confidence 7532 66779999999999999874 3457789999999999999886 2356789999999999
Q ss_pred CCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (600)
Q Consensus 509 n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 572 (600)
|.+++..+..+... ++|++|++++|++++..+ +. ..+ .|++|++++|+|++
T Consensus 297 n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~--~~----~l~--~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 297 NQLGNEDMEVIGGL-----TNLTTLFLSQNHITDIRP--LA----SLS--KMDSADFANQVIKK 347 (347)
T ss_dssp SCCCGGGHHHHHTC-----TTCSEEECCSSSCCCCGG--GG----GCT--TCSEESSSCC----
T ss_pred CcCCCcChhHhhcc-----ccCCEEEccCCccccccC--hh----hhh--ccceeehhhhcccC
Confidence 99999888777665 889999999999997655 22 233 39999999998763
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.6e-33 Score=312.96 Aligned_cols=385 Identities=20% Similarity=0.174 Sum_probs=238.8
Q ss_pred HHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhc-CCCccEEEccCCCCCh
Q 007526 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGNPIGD 232 (600)
Q Consensus 154 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~ 232 (600)
+...+..+++|++|++++|.+... ++ . ..+++|++|++++|.++.. ++..+.. +++|++|++++|.++.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~----~~-~-~~l~~L~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGP----IP-P-LPLKSLQYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEES----CC-C-CCCTTCCEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEE
T ss_pred ccHHHhcCCCCCEEECCCCcccCc----cC-c-cccCCCCEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCC
Confidence 345567889999999999987532 11 1 1456777777777765411 1111222 3566666666666543
Q ss_pred HHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHH-HHHhcCCCccEEeecCCCCChhhHHHH-----------------
Q 007526 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLKNNSILRVLELNNNMIDYSGFTSL----------------- 294 (600)
Q Consensus 233 ~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l----------------- 294 (600)
. ++..+..+++|++|++++|.++.. ++ ..+..+++|++|++++|.+++.....+
T Consensus 309 ~----~p~~~~~l~~L~~L~L~~n~l~~~----ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 309 A----VPPFFGSCSLLESLALSSNNFSGE----LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp C----CCGGGGGCTTCCEEECCSSEEEEE----CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred c----cchHHhcCCCccEEECCCCcccCc----CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence 2 334445556666666666655421 11 123444666666666665532110111
Q ss_pred ----HHHHhh--CCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcC
Q 007526 295 ----AEALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (600)
Q Consensus 295 ----~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (600)
+..+.. +++|++|++++|.++.. ++..+..+++|++|++++|.+++... ..+ ...++|+.|++++
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l-~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIP----SSL-GSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCC----GGG-GGCTTCCEEECCS
T ss_pred CCCcChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCccc----HHH-hcCCCCCEEECCC
Confidence 111111 34566666666654422 22345677788888888887654311 122 2334788888888
Q ss_pred CCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE
Q 007526 369 NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448 (600)
Q Consensus 369 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 448 (600)
|.+... ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++. ++..+..+++|++|
T Consensus 452 n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 452 NMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAIL 519 (768)
T ss_dssp SCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEE
T ss_pred CcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEE
Confidence 887754 556677888888888888888754 455677788888888888888754 34456667888888
Q ss_pred ECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHH-----------------------------------
Q 007526 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD----------------------------------- 493 (600)
Q Consensus 449 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~----------------------------------- 493 (600)
+|++|++... +...+..+++|++|++++|.+++.-+..+..
T Consensus 520 ~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 520 KLSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp ECCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred ECCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 8888887644 2234567788999999888765322221111
Q ss_pred -------------------------------HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526 494 -------------------------------MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (600)
Q Consensus 494 -------------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~ 542 (600)
.+..+++|+.||+++|.+++..+..+..+ +.|+.|||++|++++
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-----PYLFILNLGHNDISG 670 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-----TTCCEEECCSSCCCS
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-----ccCCEEeCcCCccCC
Confidence 12234678899999998887655555554 789999999999998
Q ss_pred hHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhhh
Q 007526 543 DGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC 596 (600)
Q Consensus 543 ~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~c 596 (600)
..+..+..+.. |+.|||++|+++......+.. ...++.|++++|
T Consensus 671 ~ip~~l~~L~~------L~~LdLs~N~l~g~ip~~l~~----l~~L~~L~ls~N 714 (768)
T 3rgz_A 671 SIPDEVGDLRG------LNILDLSSNKLDGRIPQAMSA----LTMLTEIDLSNN 714 (768)
T ss_dssp CCCGGGGGCTT------CCEEECCSSCCEECCCGGGGG----CCCCSEEECCSS
T ss_pred CCChHHhCCCC------CCEEECCCCcccCcCChHHhC----CCCCCEEECcCC
Confidence 88777766544 999999999988654443322 234555666554
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.1e-31 Score=295.34 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=108.5
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
+|++|++++|.+... .+..+..+++|++|++++|.+.+.. ....+..+++|++|++++|.++... +..+
T Consensus 377 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~ 445 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSL----KTEAFKECPQLELLDLAFTRLKVKD---AQSPFQNLHLLKVLNLSHSLLDISS----EQLF 445 (606)
T ss_dssp TCCEEECCSCSCEEE----CTTTTTTCTTCSEEECTTCCEECCT---TCCTTTTCTTCCEEECTTCCCBTTC----TTTT
T ss_pred CCCEEECCCCcCCcC----CHHHhcCCccCCeEECCCCcCCCcc---cchhhhCcccCCEEECCCCccCCcC----HHHH
Confidence 455555555544432 2233445555555555555544320 0112444566666666666665432 2334
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|++++|.+++.... ....+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHA----FTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred hCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCccCccChhh----hccccCCCEEECCCCccCcCChhHh
Confidence 4457777777777766542110 0022455677777888777777664433 3445788888888888877665555
Q ss_pred HHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~ 573 (600)
... +.| +|++++|++++..+..+..+.. |+.|++++|++...
T Consensus 521 ~~l-----~~L-~L~L~~N~l~~~~~~~~~~l~~------L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 521 SHL-----KGI-YLNLASNHISIILPSLLPILSQ------QRTINLRQNPLDCT 562 (606)
T ss_dssp TTC-----CSC-EEECCSSCCCCCCGGGHHHHHT------SSEEECTTCCEECS
T ss_pred Ccc-----ccc-EEECcCCcccccCHhhcccCCC------CCEEeCCCCCcccc
Confidence 443 667 8888888887666655555544 88888888887753
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.5e-28 Score=259.39 Aligned_cols=327 Identities=21% Similarity=0.232 Sum_probs=252.9
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
+..+++|++|+|++|.+.+. .. +..+++|++|++++|.++... . +..+++|++|++++|.+++..
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~L~~n~l~~~~--- 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDI-----TP-LKNLTKLVDILMNNNQIADIT-----P-LANLTNLTGLTLFNNQITDID--- 128 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCG---
T ss_pred hhhhcCCCEEECCCCccCCc-----hh-hhccccCCEEECCCCccccCh-----h-hcCCCCCCEEECCCCCCCCCh---
Confidence 34688899999999988763 22 777899999999999886432 1 567889999999999887642
Q ss_pred HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 317 (600)
.+..+++|++|++++|.++... .+..+++|++|++++ .+.+. ..+..+++|++|++++|.++..
T Consensus 129 ---~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~------~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 129 ---PLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDL------KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ---GGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCC------GGGTTCTTCCEEECCSSCCCCC
T ss_pred ---HHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCc------hhhccCCCCCEEECcCCcCCCC
Confidence 2667899999999999887632 256678999999964 34321 1256789999999999998764
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (600)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (600)
. .+..+++|++|++++|.+.+... + ...++|+.|++++|.++.. ..+..+++|++|++++|
T Consensus 193 ~------~l~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 193 S------VLAKLTNLESLIATNNQISDITP------L-GILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp G------GGGGCTTCSEEECCSSCCCCCGG------G-GGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred h------hhccCCCCCEEEecCCccccccc------c-cccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCC
Confidence 3 36688999999999998876432 1 2345899999999998873 24678899999999999
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEe
Q 007526 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477 (600)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 477 (600)
.+.+.. . +..+++|++|++++|.++.... +..+++|++|++++|.+++... +..+++|++|+
T Consensus 254 ~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~ 315 (466)
T 1o6v_A 254 QISNLA-----P-LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------ISNLKNLTYLT 315 (466)
T ss_dssp CCCCCG-----G-GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEE
T ss_pred ccccch-----h-hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEE
Confidence 988742 1 6778999999999999987432 5667999999999999876532 56789999999
Q ss_pred ccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcc
Q 007526 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 557 (600)
Q Consensus 478 l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~ 557 (600)
+++|.+++..+ +..+++|++|++++|.+++. ..+... ++|++|++++|++++..+ +. ..+
T Consensus 316 L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~~l-----~~L~~L~l~~n~l~~~~~--~~----~l~- 375 (466)
T 1o6v_A 316 LYFNNISDISP------VSSLTKLQRLFFYNNKVSDV--SSLANL-----TNINWLSAGHNQISDLTP--LA----NLT- 375 (466)
T ss_dssp CCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCBCGG--GT----TCT-
T ss_pred CcCCcCCCchh------hccCccCCEeECCCCccCCc--hhhccC-----CCCCEEeCCCCccCccch--hh----cCC-
Confidence 99999987754 45679999999999999875 223332 789999999999987665 22 233
Q ss_pred cceeEEEccCCCCchh
Q 007526 558 VAVTSLNLANNFLTKF 573 (600)
Q Consensus 558 ~~L~~L~l~~n~l~~~ 573 (600)
.|++|++++|+++..
T Consensus 376 -~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 376 -RITQLGLNDQAWTNA 390 (466)
T ss_dssp -TCCEEECCCEEEECC
T ss_pred -CCCEEeccCCcccCC
Confidence 399999999988764
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1e-28 Score=262.40 Aligned_cols=342 Identities=21% Similarity=0.223 Sum_probs=268.6
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (600)
.++++++|+++++.+... . .+..+++|++|++++|.++... . +..+++|++|++++|.+....
T Consensus 44 ~l~~l~~L~l~~~~i~~l-----~-~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~----- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-----D-GVEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADIT----- 106 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCG-----
T ss_pred HhccccEEecCCCCCccC-----c-chhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccCh-----
Confidence 356899999999988762 2 3677899999999999987542 2 678899999999999998742
Q ss_pred HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (600)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 319 (600)
. +..+++|++|++++|.++.... +..+++|++|++++|.+++.. .+..+++|++|+++++ +....
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~-~~~~~- 171 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQ-VTDLK- 171 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEES-CCCCG-
T ss_pred h-hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCCc-ccCch-
Confidence 2 6778999999999999987532 667899999999999987532 3668999999999744 33321
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (600)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (600)
.+..+++|++|++++|.+++.. .+ ...++|++|++++|.+... .. +..+++|++|++++|.+
T Consensus 172 -----~~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 172 -----PLANLTTLERLDISSNKVSDIS------VL-AKLTNLESLIATNNQISDI-----TP-LGILTNLDELSLNGNQL 233 (466)
T ss_dssp -----GGTTCTTCCEEECCSSCCCCCG------GG-GGCTTCSEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred -----hhccCCCCCEEECcCCcCCCCh------hh-ccCCCCCEEEecCCccccc-----cc-ccccCCCCEEECCCCCc
Confidence 2668999999999999988642 12 3445899999999999874 22 67899999999999999
Q ss_pred ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (600)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 479 (600)
.+. ..+..+++|++|++++|.++.... +..+++|++|++++|.+++... +..+++|++|+++
T Consensus 234 ~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 KDI------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP------LAGLTALTNLELN 295 (466)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECC
T ss_pred ccc------hhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcC
Confidence 874 346778999999999999987432 6677999999999999987532 5678999999999
Q ss_pred CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccc
Q 007526 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559 (600)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~ 559 (600)
+|.+++... +..+++|++|++++|.+++..+ +... ++|++|++++|++++.. .+ ...+ .
T Consensus 296 ~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~n~l~~~~--~l----~~l~--~ 354 (466)
T 1o6v_A 296 ENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSL-----TKLQRLFFYNNKVSDVS--SL----ANLT--N 354 (466)
T ss_dssp SSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGC-----TTCCEEECCSSCCCCCG--GG----TTCT--T
T ss_pred CCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccC-----ccCCEeECCCCccCCch--hh----ccCC--C
Confidence 999988644 5678999999999999998654 2222 78999999999999752 22 2333 3
Q ss_pred eeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhhh
Q 007526 560 VTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC 596 (600)
Q Consensus 560 L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~c 596 (600)
|+.|++++|++++... + ...+.++.|++++|
T Consensus 355 L~~L~l~~n~l~~~~~--~----~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP--L----ANLTRITQLGLNDQ 385 (466)
T ss_dssp CCEEECCSSCCCBCGG--G----TTCTTCCEEECCCE
T ss_pred CCEEeCCCCccCccch--h----hcCCCCCEEeccCC
Confidence 9999999999987653 2 12345666666554
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.5e-30 Score=286.10 Aligned_cols=302 Identities=19% Similarity=0.213 Sum_probs=220.5
Q ss_pred CcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (600)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 326 (600)
+|+.|++++|.++.... ..+..+++|++|++++|.++ .++..+..+++|++|++++|.++.... ..+
T Consensus 255 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~----~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNISS----NTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQ----ISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCCT----TTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGG----GCG
T ss_pred ceeEEEeecCccCccCH----HHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCch----hhh
Confidence 34555555555544221 22455689999999999985 345566778999999999999886543 346
Q ss_pred hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHH
Q 007526 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (600)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 406 (600)
..+++|++|++++|.+... +........++|++|++++|.++.... .+..+..+++|++|++++|.+.+.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~---- 391 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLE----LGTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSL---- 391 (606)
T ss_dssp GGCTTCSEEECCSCSSCCB----CCSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEE----
T ss_pred hccCcCCEEECCCCCcccc----cchhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcC----
Confidence 6899999999999987632 111111345689999999999987420 134577899999999999998764
Q ss_pred HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (600)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 486 (600)
.+..+..+++|++|++++|.++.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.+++.
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTCBCGGG
T ss_pred CHHHhcCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCCCCCcc
Confidence 34567778999999999998865321 1235567999999999999876532 3346688999999999998763
Q ss_pred HHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEcc
Q 007526 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (600)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~ 566 (600)
... ....+..+++|++|++++|.+++..+..+... ++|++|++++|+|++..+..+..+.. + +|+++
T Consensus 465 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~------L-~L~L~ 531 (606)
T 3t6q_A 465 NIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL-----KMMNHVDLSHNRLTSSSIEALSHLKG------I-YLNLA 531 (606)
T ss_dssp EEC-SSCGGGGCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCGGGGGGGTTCCS------C-EEECC
T ss_pred ccc-cchhhccCCCccEEECCCCccCccChhhhccc-----cCCCEEECCCCccCcCChhHhCcccc------c-EEECc
Confidence 211 01235667999999999999998765555544 88999999999999887766654322 7 99999
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhhhHhh
Q 007526 567 NNFLTKFGQVISLFFSFLLHQIKSLFHSW 595 (600)
Q Consensus 567 ~n~l~~~~~~~~~~~~~l~~~l~~l~~~~ 595 (600)
+|+++......+..+ ..++.++++.
T Consensus 532 ~N~l~~~~~~~~~~l----~~L~~L~l~~ 556 (606)
T 3t6q_A 532 SNHISIILPSLLPIL----SQQRTINLRQ 556 (606)
T ss_dssp SSCCCCCCGGGHHHH----HTSSEEECTT
T ss_pred CCcccccCHhhcccC----CCCCEEeCCC
Confidence 999998776655443 4456665554
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.3e-31 Score=295.06 Aligned_cols=347 Identities=14% Similarity=0.152 Sum_probs=180.5
Q ss_pred HhccCCCccEEEcccCCCCHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCCCcC
Q 007526 185 SLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVE 249 (600)
Q Consensus 185 ~l~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~ 249 (600)
.+.++++|++|+|++|.++.. ....++..+. ++++|++|++++|.+... ++..+.++++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~ 276 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALPEMQ 276 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCSSCC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCCCCC
Confidence 344555566666666655431 0111333334 555566666655554432 334444455555
Q ss_pred EEEeecCC-CCh-HHHHHHHHH--HhcCCCccEEeecCCCCChhhHHHHHH--HHhhCCCccEEEccCCCCC-hHH----
Q 007526 250 RLQLSSVD-LRD-EGAKAIAEL--LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGG-ALG---- 318 (600)
Q Consensus 250 ~L~Ls~~~-l~~-~~~~~l~~~--l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~-~~~---- 318 (600)
+|++++|+ ++. .....+... +..+++|++|++++|.++ .++. .+..+++|++|++++|.++ ..+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence 55555555 554 222222211 112245555555555553 1222 3444555555555555543 111
Q ss_pred -------------HHHHHHHhhcCCC-CCEEEccCCCCCchHHHHHHHhhhc-CCCcccEEECcCCCCChhhHHHHHHHH
Q 007526 319 -------------ANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSISAKGAFHVAEYI 383 (600)
Q Consensus 319 -------------~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l 383 (600)
...++..+..+++ |++|++++|.++. +...+.. ..++|+.|++++|.++.. ++..+
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l 422 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSV----DGKNF 422 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSSCTTTT----TTCSS
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCCcCCCc----chhhh
Confidence 0011223445555 6666666666552 1111111 112566777777766553 33333
Q ss_pred H-------hCCCCcEEEccCCCCChHHHHHHHH-HhhcCCCccEEEccCCCCChHHHHHHHHH---hhcCCCcCEEECcC
Q 007526 384 K-------NCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARV---LKDNSVITSLDLAY 452 (600)
Q Consensus 384 ~-------~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~~~~L~~L~Ls~ 452 (600)
. .+++|++|++++|.++. ++. .+..+++|++|++++|.++......+... +.++++|++|+|++
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred cccccccccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 3 45567777777777664 222 23346777777777777763211111000 01112778888888
Q ss_pred CCCChhHHHHHHHHHh--hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc------CCCCChHHHHHHHHHHh
Q 007526 453 NPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR------ANGLRDEGAKCLAQSFK 524 (600)
Q Consensus 453 n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls------~n~i~~~~~~~l~~~l~ 524 (600)
|.++.. ...+. .+++|++|++++|.++.. ...+..+++|++|+++ +|.+....+..+..+
T Consensus 498 N~l~~l-----p~~~~~~~l~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l-- 565 (636)
T 4eco_A 498 NKLTKL-----SDDFRATTLPYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC-- 565 (636)
T ss_dssp SCCCBC-----CGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC--
T ss_pred CcCCcc-----ChhhhhccCCCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC--
Confidence 877632 23333 567888888888887752 2234456888888884 455554433334333
Q ss_pred hcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526 525 VVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578 (600)
Q Consensus 525 ~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 578 (600)
++|++|++++|+|+.. +..+. + .|++|+|++|++.......+
T Consensus 566 ---~~L~~L~Ls~N~l~~i-p~~~~------~--~L~~L~Ls~N~l~~~~~~~~ 607 (636)
T 4eco_A 566 ---PSLTQLQIGSNDIRKV-NEKIT------P--NISVLDIKDNPNISIDLSYV 607 (636)
T ss_dssp ---SSCCEEECCSSCCCBC-CSCCC------T--TCCEEECCSCTTCEEECTTT
T ss_pred ---CCCCEEECCCCcCCcc-CHhHh------C--cCCEEECcCCCCccccHHhc
Confidence 7788888888888533 22222 1 38888888888877654433
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=5.7e-30 Score=271.44 Aligned_cols=371 Identities=16% Similarity=0.126 Sum_probs=259.1
Q ss_pred CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (600)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (600)
.+++++|+|++|.+... ....+..+++|++|++++|.+... .-...+..+++|++|+|++|+++.. .+.
T Consensus 29 ~~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 97 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQL----ETG 97 (455)
T ss_dssp CTTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEE----CTT
T ss_pred CCccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCcc----Chh
Confidence 36799999999999764 245678899999999999986411 0023356788999999999998765 345
Q ss_pred HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH-HhhCCCccEEEccCCCCChHHH
Q 007526 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA-LLENSTIRSLHLNGNYGGALGA 319 (600)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~ 319 (600)
.+..+++|++|++++|+++...... ..+..+++|++|++++|.+++.. +.. +..+++|++|++++|.++....
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQ----PASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCC----CCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred hccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccC----cccccCCCCcccEEeCCCCcccccCh
Confidence 5667899999999999998742211 12566799999999999987432 222 5678999999999998876443
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCCchHHHHHH----HhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALM----SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (600)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 395 (600)
..+.. + ...+|+.|++++|.+.+.....+. ..+ ...++|++|++++|.++......+...+ ..++|+.|+++
T Consensus 172 ~~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l~ 247 (455)
T 3v47_A 172 EDLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILS 247 (455)
T ss_dssp TTSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEECT
T ss_pred hhhhc-c-ccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhhhhccc-cccceeeEeec
Confidence 22211 1 126799999999987653221111 111 1234799999999999986433333221 23789999998
Q ss_pred CCCCChHHHHH--H----HHHhh--cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526 396 MNDIGDEGAEK--I----ADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (600)
Q Consensus 396 ~n~l~~~~~~~--l----~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (600)
+|.+....... + ...+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+++.... .+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~ 319 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDN----AF 319 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChh----Hh
Confidence 88543311000 0 00011 136899999999998875 334466679999999999998865332 34
Q ss_pred hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHH
Q 007526 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547 (600)
Q Consensus 468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~ 547 (600)
..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+... ++|++|++++|+|++.....
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRM----FENLDKLEVLDLSYNHIRALGDQSFLGL-----PNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGG----GTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCTTT
T ss_pred cCcccCCEEECCCCccCCcChhH----hcCcccCCEEECCCCcccccChhhcccc-----ccccEEECCCCccccCCHhH
Confidence 56789999999999998775544 4556999999999999988755555544 78999999999998755443
Q ss_pred HHHHHHhCcccceeEEEccCCCCchhHH
Q 007526 548 IAQALKANEDVAVTSLNLANNFLTKFGQ 575 (600)
Q Consensus 548 l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 575 (600)
+..+ + +|++|++++|+++....
T Consensus 391 ~~~l----~--~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 391 FDRL----T--SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTC----T--TCCEEECCSSCBCCCTT
T ss_pred hccC----C--cccEEEccCCCcccCCC
Confidence 3322 2 39999999999987543
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.2e-29 Score=270.36 Aligned_cols=359 Identities=14% Similarity=0.124 Sum_probs=216.7
Q ss_pred HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (600)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (600)
.+..+++|++|+|++|.+... .+..+..+++|++|++++|.++.. +.. .+++|++|++++|+++...
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~--~l~~L~~L~L~~N~l~~~~-- 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYL----DISVFKFNQELEYLDLSHNKLVKI-----SCH--PTVNLKHLDLSFNAFDALP-- 106 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEE----EGGGGTTCTTCCEEECCSSCCCEE-----ECC--CCCCCSEEECCSSCCSSCC--
T ss_pred hccccccccEEecCCCccCCc----ChHHhhcccCCCEEecCCCceeec-----Ccc--ccCCccEEeccCCcccccc--
Confidence 455677888888888877653 134566777888888888877632 111 5677888888888776421
Q ss_pred HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCc--cEEeecCCCC--Chhh----------------------
Q 007526 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSG---------------------- 290 (600)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~~---------------------- 290 (600)
++..+..+++|++|++++|.++... +..+++| ++|++++|.+ +...
T Consensus 107 -~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 107 -ICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp -CCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred -chhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 2345566788888888888877621 2334666 8888887766 2111
Q ss_pred ------------------------------HHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCC
Q 007526 291 ------------------------------FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340 (600)
Q Consensus 291 ------------------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (600)
+......+..+++|+.|++++|.++......+...+. .++|++|++++|
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n 257 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH-TSSCSEEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh-hCcccEEEeecc
Confidence 1111112333444444444444444433333332221 235555555555
Q ss_pred CCCchHHHHHHHhhh----cCCCc--------------------------ccEEECcCCCCChhhHHHHHHHHHhCCCCc
Q 007526 341 SIGDEGIRALMSGLS----SRKGK--------------------------LAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390 (600)
Q Consensus 341 ~l~~~~~~~l~~~l~----~~~~~--------------------------L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 390 (600)
.+++. +...+. ...+. |+.|++++|.+.... ....+++|+
T Consensus 258 ~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~ 327 (520)
T 2z7x_B 258 KLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML------CPSKISPFL 327 (520)
T ss_dssp EEESC----CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC------CCSSCCCCC
T ss_pred cccCc----cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc------chhhCCccc
Confidence 43321 000000 01112 333333333332210 014678889
Q ss_pred EEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh-hHHHHHHHHHhh
Q 007526 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA-DGAKALSEVLKF 469 (600)
Q Consensus 391 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~ 469 (600)
+|++++|.+++. ++..+..+++|++|++++|+++... .++..+..+++|++|++++|.+++ .... .+..
T Consensus 328 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----~~~~ 397 (520)
T 2z7x_B 328 HLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKELS--KIAEMTTQMKSLQQLDISQNSVSYDEKKG----DCSW 397 (520)
T ss_dssp EEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBHH--HHHHHHTTCTTCCEEECCSSCCBCCGGGC----SCCC
T ss_pred EEEeECCccChh----hhhhhccCCCCCEEEccCCccCccc--cchHHHhhCCCCCEEECCCCcCCcccccc----hhcc
Confidence 999999988874 4455677888999999999988632 255667777999999999998875 2211 2345
Q ss_pred CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHH
Q 007526 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA 549 (600)
Q Consensus 470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~ 549 (600)
+++|++|++++|.+++..+..+. ++|++|++++|.|+..... +... ++|++|++++|+|+......+.
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~------~~L~~L~Ls~N~l~~ip~~-~~~l-----~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP------PRIKVLDLHSNKIKSIPKQ-VVKL-----EALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC------TTCCEEECCSSCCCCCCGG-GGGC-----TTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCEEECcCCCCCcchhhhhc------ccCCEEECCCCcccccchh-hhcC-----CCCCEEECCCCcCCccCHHHhc
Confidence 67899999999988765433221 6899999999988853221 2222 7899999999999864433232
Q ss_pred HHHHhCcccceeEEEccCCCCchhHH
Q 007526 550 QALKANEDVAVTSLNLANNFLTKFGQ 575 (600)
Q Consensus 550 ~~~~~~~~~~L~~L~l~~n~l~~~~~ 575 (600)
. .+ .|++|++++|++.....
T Consensus 466 ~----l~--~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 466 R----LT--SLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp T----CT--TCCEEECCSSCBCCCHH
T ss_pred c----CC--cccEEECcCCCCcccCC
Confidence 2 22 39999999999987544
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.6e-31 Score=293.91 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=83.6
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
+..+++|++|+|++|.+.... ...+..+++|++|+|++|.++... +..+..+++|++|++++|.+.....
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~-- 121 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIE----DKAWHGLHHLSNLILTGNPIQSFS----PGSFSGLTSLENLVAVETKLASLES-- 121 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCCCC----TTSSTTCTTCCEEECTTSCCCCSSS--
T ss_pred ccCCccCcEEeCCCCcccccC----HHHhhchhhcCEeECCCCcccccC----hhhcCCcccCCEEEccCCccccccc--
Confidence 456788888888888887531 345677888888999888876432 2345677888999998888765321
Q ss_pred HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChh
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 289 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 289 (600)
..+..+++|++|++++|.++... ++..+.++++|++|++++|.+++.
T Consensus 122 --~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 122 --FPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp --SCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred --cccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCcceec
Confidence 23556788999999988876421 334566678899999999888654
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.1e-30 Score=292.93 Aligned_cols=341 Identities=15% Similarity=0.191 Sum_probs=181.3
Q ss_pred HHHhccCCCccEEEcccCCCCHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCCC
Q 007526 183 AESLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAG 247 (600)
Q Consensus 183 ~~~l~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 247 (600)
+..+..+++|++|+|++|.++.. .-..++..+. .+++|++|+|++|.+... ++..+..+++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCCC
Confidence 34466677788888888877641 0012444444 677777888877766543 4455666777
Q ss_pred cCEEEeecCC-CCh-HHHHHHHHH---HhcCCCccEEeecCCCCChhhHHHHHH--HHhhCCCccEEEccCCCCChHHHH
Q 007526 248 VERLQLSSVD-LRD-EGAKAIAEL---LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGGALGAN 320 (600)
Q Consensus 248 L~~L~Ls~~~-l~~-~~~~~l~~~---l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~ 320 (600)
|+.|+|++|+ ++. .....+... +..+++|++|++++|.++ .++. .+..+++|+.|++++|.++..+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-- 589 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----EFPASASLQKMVKLGLLDCVHNKVRHLE-- 589 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----BCCCHHHHTTCTTCCEEECTTSCCCBCC--
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----ccCChhhhhcCCCCCEEECCCCCcccch--
Confidence 7777777776 665 333333332 123447777777777775 2333 5666777777777777766322
Q ss_pred HHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCc-ccEEECcCCCCChhhHHHHHHHHHhC-------------
Q 007526 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNC------------- 386 (600)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~------------- 386 (600)
.+..+++|+.|++++|.++. +...+. ..++ |+.|++++|.++. ++..+...
T Consensus 590 ----~~~~L~~L~~L~Ls~N~l~~-----lp~~l~-~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 590 ----AFGTNVKLTDLKLDYNQIEE-----IPEDFC-AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ----CCCTTSEESEEECCSSCCSC-----CCTTSC-EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred ----hhcCCCcceEEECcCCcccc-----chHHHh-hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCC
Confidence 34556666666666666652 112221 2223 6666666665553 33222222
Q ss_pred ------------------CCCcEEEccCCCCChHHHHHHHHHh-hcCCCccEEEccCCCCChHHHHHHHHH---hhcCCC
Q 007526 387 ------------------KSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV---LKDNSV 444 (600)
Q Consensus 387 ------------------~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~~~~ 444 (600)
++|++|++++|.++. ++..+ ..+++|+.|++++|.++......+... +.++++
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence 245555555555443 22222 234556666666655552111000000 011125
Q ss_pred cCEEECcCCCCChhHHHHHHHHHh--hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccC------CCCChHHH
Q 007526 445 ITSLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA------NGLRDEGA 516 (600)
Q Consensus 445 L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~------n~i~~~~~ 516 (600)
|++|+|++|+|+. +...+. .+++|+.|++++|.++.. ...+..+++|+.|+|++ |.+....+
T Consensus 730 L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 730 LTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp CCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred ccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 6666666666552 122222 456666666666666542 22234456677776654 44444333
Q ss_pred HHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526 517 KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578 (600)
Q Consensus 517 ~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 578 (600)
..+..+ ++|++|+|++|+|+. .+..+. + .|+.|||++|++.......+
T Consensus 800 ~~l~~L-----~~L~~L~Ls~N~L~~-Ip~~l~------~--~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 800 TGITTC-----PSLIQLQIGSNDIRK-VDEKLT------P--QLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp TTGGGC-----SSCCEEECCSSCCCB-CCSCCC------S--SSCEEECCSCTTCEEECGGG
T ss_pred HHHhcC-----CCCCEEECCCCCCCc-cCHhhc------C--CCCEEECCCCCCCccChHHc
Confidence 333332 667777777777742 222221 1 37777777777766554443
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.3e-29 Score=268.67 Aligned_cols=375 Identities=15% Similarity=0.141 Sum_probs=267.7
Q ss_pred cEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH-HHHHh
Q 007526 165 SSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL-CDILV 243 (600)
Q Consensus 165 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~ 243 (600)
+.++.+++.++. ++. -.++|++|+|++|.++... ...+..+++|++|++++|.+... + ...+.
T Consensus 13 ~~~~c~~~~l~~-----lp~---l~~~l~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~----i~~~~~~ 76 (455)
T 3v47_A 13 YNAICINRGLHQ-----VPE---LPAHVNYVDLSLNSIAELN----ETSFSRLQDLQFLKVEQQTPGLV----IRNNTFR 76 (455)
T ss_dssp TEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCCEEC----TTTTSSCTTCCEEECCCCSTTCE----ECTTTTT
T ss_pred cccCcCCCCccc-----CCC---CCCccCEEEecCCccCcCC----hhHhccCccccEEECcCCcccce----ECccccc
Confidence 356777777665 232 2378999999999987532 33456789999999999987532 1 23456
Q ss_pred hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH--HhhCCCccEEEccCCCCChHHHHH
Q 007526 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA--LLENSTIRSLHLNGNYGGALGANA 321 (600)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~~L~L~~n~l~~~~~~~ 321 (600)
.+++|++|++++|+++... +..+..+++|++|++++|.+++. ++.. +..+++|++|++++|.++.....
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 147 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLE----TGAFNGLANLEVLTLTQCNLDGA----VLSGNFFKPLTSLEMLVLRDNNIKKIQPA- 147 (455)
T ss_dssp TCTTCCEEECTTCTTCEEC----TTTTTTCTTCCEEECTTSCCBTH----HHHSSTTTTCTTCCEEECCSSBCCSCCCC-
T ss_pred ccccCCEEeCCCCccCccC----hhhccCcccCCEEeCCCCCCCcc----ccCcccccCcccCCEEECCCCccCccCcc-
Confidence 6799999999999998742 34456679999999999999742 2332 66789999999999998765321
Q ss_pred HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH----HHHHHhCCCCcEEEccCC
Q 007526 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV----AEYIKNCKSLLWINLYMN 397 (600)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l----~~~l~~~~~L~~L~Ls~n 397 (600)
..+..+++|++|++++|.+++.....+.. + ...+|+.|++++|.+.......+ ...+..+++|++|++++|
T Consensus 148 --~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 148 --SFFLNMRRFHVLDLTFNKVKSICEEDLLN-F--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp --GGGGGCTTCCEEECTTCCBSCCCTTTSGG-G--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred --cccCCCCcccEEeCCCCcccccChhhhhc-c--ccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 12568899999999999987643322211 1 12479999999998876321111 111235578999999999
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHH----------HHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA----------SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (600)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (600)
.+++.....+...+ ..++|+.|++++|.+..... ..+.. ...++|++|++++|.+++.. ...+
T Consensus 223 ~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----~~~~ 295 (455)
T 3v47_A 223 GFKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALL----KSVF 295 (455)
T ss_dssp CCCHHHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEEC----TTTT
T ss_pred cccccchhhhhccc-cccceeeEeeccccccccccchhhhccCccccccc--ccccCceEEEecCccccccc----hhhc
Confidence 99988666665543 34899999999885433110 00000 12368999999999998653 2334
Q ss_pred hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHH
Q 007526 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547 (600)
Q Consensus 468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~ 547 (600)
..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+... ++|++|++++|+|++..+..
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFENL-----DKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTTC-----TTCCEEECCSSCCCEECTTT
T ss_pred ccCCCCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcCc-----ccCCEEECCCCcccccChhh
Confidence 67889999999999998875544 4456999999999999988655555443 88999999999999876655
Q ss_pred HHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhh
Q 007526 548 IAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSW 595 (600)
Q Consensus 548 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~ 595 (600)
+..+. .|++|++++|+++......+.. .+.++.|++++
T Consensus 367 ~~~l~------~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~ 404 (455)
T 3v47_A 367 FLGLP------NLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHT 404 (455)
T ss_dssp TTTCT------TCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCS
T ss_pred ccccc------cccEEECCCCccccCCHhHhcc----CCcccEEEccC
Confidence 54433 3999999999999876654322 24455555543
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3.1e-30 Score=284.13 Aligned_cols=344 Identities=15% Similarity=0.157 Sum_probs=217.3
Q ss_pred HHhCCCccEEEcCCCCCCHH-------------HHHHHHHHhc--cCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccE
Q 007526 158 AKELRAFSSVDMSGRNFGDE-------------GLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKT 222 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~ 222 (600)
+..+++|++|+|++|.+... ....++..+. .+++|++|++++|.+.. .++..+..+++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQL 277 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCE
Confidence 44566667777776666541 1111344444 56666666666665432 23334455666666
Q ss_pred EEccCCC-CCh-HHHHHHHHHHhh------CCCcCEEEeecCCCChHHHHHHHH--HHhcCCCccEEeecCCCCCh-h--
Q 007526 223 LNLSGNP-IGD-EGVKCLCDILVD------NAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDY-S-- 289 (600)
Q Consensus 223 L~Ls~n~-l~~-~~~~~l~~~l~~------~~~L~~L~Ls~~~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~-~-- 289 (600)
|++++|+ ++. . ++..+.. +++|++|++++|+++. ++. .+..+++|++|++++|.+++ .
T Consensus 278 L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g~ip~ 348 (636)
T 4eco_A 278 INVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEGKLPA 348 (636)
T ss_dssp EECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEEECCC
T ss_pred EECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCccchhh
Confidence 6666665 554 2 2222222 2556666666665552 222 34444555555555555431 0
Q ss_pred ---------------hHHHHHHHHhhCCC-ccEEEccCCCCChHHHHHHHHHhhcC--CCCCEEEccCCCCCchHHHHHH
Q 007526 290 ---------------GFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN--KSLRELHLHGNSIGDEGIRALM 351 (600)
Q Consensus 290 ---------------~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~--~~L~~L~Ls~n~l~~~~~~~l~ 351 (600)
.+..++..+..+++ |++|++++|.++..+ ..+... ++|++|++++|.+++.....+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-----NIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC-----SCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc-----hhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 00133445666777 999999999887432 233333 4899999999998764222121
Q ss_pred Hh-h-hcCCCcccEEECcCCCCChhhHHHHHH-HHHhCCCCcEEEccCCCCChHHHHHHHHHhhc--------CCCccEE
Q 007526 352 SG-L-SSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMNDIGDEGAEKIADALKQ--------NRTITTI 420 (600)
Q Consensus 352 ~~-l-~~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--------~~~L~~L 420 (600)
.. . ....++|+.|++++|.++. ++. .+..+++|++|++++|.++. ++..... +++|++|
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTE-----IPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSB-----CCSSSSEETTEECTTGGGCCEE
T ss_pred ccccccccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCC-----cCHHHhccccccccccCCccEE
Confidence 00 0 0023489999999999986 443 34568999999999999885 3322222 1289999
Q ss_pred EccCCCCChHHHHHHHHHhh--cCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc------CcCCChhHHHHHH
Q 007526 421 DLGGNNIHSKGASAIARVLK--DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG------WCQIGASGAEFVA 492 (600)
Q Consensus 421 ~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~------~n~i~~~~~~~l~ 492 (600)
++++|.++. ++..+. .+++|++|+|++|+++. +...+..+++|++|+++ +|.+....+
T Consensus 494 ~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---- 559 (636)
T 4eco_A 494 DLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP---- 559 (636)
T ss_dssp ECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC----
T ss_pred ECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccCcccccCh----
Confidence 999999985 444554 77999999999999975 23345678999999995 465655433
Q ss_pred HHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHH
Q 007526 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551 (600)
Q Consensus 493 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~ 551 (600)
..+..+++|++|++++|.++..... + .++|++||+++|++.......+...
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~~ip~~-----~---~~~L~~L~Ls~N~l~~~~~~~~~~~ 610 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIRKVNEK-----I---TPNISVLDIKDNPNISIDLSYVCPY 610 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCCBCCSC-----C---CTTCCEEECCSCTTCEEECTTTHHH
T ss_pred HHHhcCCCCCEEECCCCcCCccCHh-----H---hCcCCEEECcCCCCccccHHhcchh
Confidence 3455679999999999999764221 1 1689999999998886554434333
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=7.3e-29 Score=269.43 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=101.9
Q ss_pred cccEEECcCCCCChhhHHHHHHHH-HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYI-KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
+|+.|++++|.+.. ++..+ ..+++|++|++++|.+.+..... ...+..+++|++|++++|.++.... ....
T Consensus 311 ~L~~L~l~~n~l~~-----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~ 382 (549)
T 2z81_A 311 KVKRITVENSKVFL-----VPCSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEI 382 (549)
T ss_dssp TCCEEEEESSCCCC-----CCHHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHH
T ss_pred cceEEEeccCcccc-----CCHHHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhh
Confidence 34555555555443 33333 45666666666666666542110 1113445666666666666665321 1123
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCC---------------------CccEEeccCcCCChhHHHHHHHHHhh
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHG---------------------NINTLKLGWCQIGASGAEFVADMLRY 497 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~---------------------~L~~L~l~~n~i~~~~~~~l~~~l~~ 497 (600)
+..+++|++|++++|+++.. ...+..++ +|++|++++|++++. ...
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~l-----p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~--------~~~ 449 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHPM-----PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--------SLF 449 (549)
T ss_dssp GGGCTTCCEEECTTCCCCCC-----CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC--------CCC
T ss_pred hhcCCCCCEEECCCCCCccC-----ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh--------ccc
Confidence 44556666666666655421 11122334 455555555554432 135
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526 498 NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574 (600)
Q Consensus 498 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 574 (600)
+++|++|++++|+|+.... ... .++|++||+++|+|++..+..+..+. .|++|++++|++...-
T Consensus 450 l~~L~~L~Ls~N~l~~ip~--~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 450 LPRLQELYISRNKLKTLPD--ASL-----FPVLLVMKISRNQLKSVPDGIFDRLT------SLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CTTCCEEECCSSCCSSCCC--GGG-----CTTCCEEECCSSCCCCCCTTGGGGCT------TCCEEECCSSCBCCCH
T ss_pred CChhcEEECCCCccCcCCC--ccc-----CccCCEEecCCCccCCcCHHHHhcCc------ccCEEEecCCCccCCC
Confidence 6888888888888875321 111 17799999999988876555444332 3899999999887643
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3e-29 Score=270.51 Aligned_cols=359 Identities=16% Similarity=0.145 Sum_probs=234.5
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (600)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (600)
+++++|+|++|.+.... ...+..+++|++|++++|.++... +..+..+++|++|+|++|+++. ++..
T Consensus 21 ~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLD----ISVFKFNQELEYLDLSHNKLVK-----ISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSCCCEEE----GGGGTTCTTCCEEECCSSCCCE-----EECC
T ss_pred ccccEEECCCCcccccC----hhhccccccccEEecCCCccCCcC----hHHhhcccCCCEEecCCCceee-----cCcc
Confidence 78999999999987642 356778899999999999987432 3446678999999999999985 2222
Q ss_pred HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCc--cEEEccCCCC--ChH
Q 007526 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (600)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~l--~~~ 317 (600)
.+++|++|++++|.++... ++..+..+++|++|++++|.++.. .+..+++| ++|++++|.+ +..
T Consensus 88 --~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred --ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccc
Confidence 5799999999999987621 224456779999999999999753 34456777 9999999877 211
Q ss_pred H----------------------------------------------------HHHHHHHhhcCCCCCEEEccCCCCCch
Q 007526 318 G----------------------------------------------------ANALAKGLEGNKSLRELHLHGNSIGDE 345 (600)
Q Consensus 318 ~----------------------------------------------------~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 345 (600)
. .......+..+++|+.|++++|.+++.
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 1 111112344555666666666655555
Q ss_pred HHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHH-----HhCCCCcEEEccCCCCChHHHHHHHHHh---------
Q 007526 346 GIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI-----KNCKSLLWINLYMNDIGDEGAEKIADAL--------- 411 (600)
Q Consensus 346 ~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------- 411 (600)
.+..+..... .++|++|++++|.+++. ++..+ ..+++|+.+++++|.+.-. ...+...+
T Consensus 236 ~~~~~~~~~~--~~~L~~L~l~~n~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~~p-~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 236 SFIRILQLVW--HTTVWYFSISNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp HHHHHHHHHH--TSSCSEEEEEEEEEESC----CCCCCCCCCSCCCCEEEEEEEEECCCCSC-THHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHhh--hCcccEEEeecccccCc----cccchhhcccccCceeEeccccccceecc-hhhhhcccccCceeEEE
Confidence 4444443332 12566666666665532 33333 5566666777776655111 01122221
Q ss_pred ------------hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526 412 ------------KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (600)
Q Consensus 412 ------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 479 (600)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ..+...+..+++|++|+++
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECC
T ss_pred cCCCccccccchhhCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECC
Confidence 4567788888888887763 223455668888888888888753 2344556677888888888
Q ss_pred CcCCCh-hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCccc
Q 007526 480 WCQIGA-SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV 558 (600)
Q Consensus 480 ~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~ 558 (600)
+|.+++ .+.. .+..+++|++|++++|.+++..+..+ .++|++|++++|+|+. .+..+.. .+
T Consensus 383 ~N~l~~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l-------~~~L~~L~Ls~N~l~~-ip~~~~~----l~-- 444 (520)
T 2z7x_B 383 QNSVSYDEKKG----DCSWTKSLLSLNMSSNILTDTIFRCL-------PPRIKVLDLHSNKIKS-IPKQVVK----LE-- 444 (520)
T ss_dssp SSCCBCCGGGC----SCCCCTTCCEEECCSSCCCGGGGGSC-------CTTCCEEECCSSCCCC-CCGGGGG----CT--
T ss_pred CCcCCcccccc----hhccCccCCEEECcCCCCCcchhhhh-------cccCCEEECCCCcccc-cchhhhc----CC--
Confidence 888876 3322 23345788888888888876432211 1578888888888873 2222222 22
Q ss_pred ceeEEEccCCCCchhHHH
Q 007526 559 AVTSLNLANNFLTKFGQV 576 (600)
Q Consensus 559 ~L~~L~l~~n~l~~~~~~ 576 (600)
.|++|++++|+++..+..
T Consensus 445 ~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 445 ALQELNVASNQLKSVPDG 462 (520)
T ss_dssp TCCEEECCSSCCCCCCTT
T ss_pred CCCEEECCCCcCCccCHH
Confidence 388889998888876554
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=8e-29 Score=277.80 Aligned_cols=349 Identities=15% Similarity=0.164 Sum_probs=258.0
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCC-CCH-HHHHHHHH---HHhcCCCccEEEccCCCCChHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITA-AGIKAFDG---VLQSNIALKTLNLSGNPIGDEG 234 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~-l~~-~~~~~l~~---~l~~~~~L~~L~Ls~n~l~~~~ 234 (600)
.+++|++|+|++|.+... ++..+..+++|++|+|++|. ++. .-...+.. .+..+++|++|+|++|.++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--
T ss_pred cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--
Confidence 789999999999987543 46678889999999999998 875 22223322 23456699999999999983
Q ss_pred HHHHHH--HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCC-ccEEEccC
Q 007526 235 VKCLCD--ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNG 311 (600)
Q Consensus 235 ~~~l~~--~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~L~~ 311 (600)
++. .+..+++|+.|+|++|.++. ++ .+..+++|++|++++|.++ .++..+..+++ |+.|++++
T Consensus 563 ---ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 563 ---FPASASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp ---CCCHHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCS
T ss_pred ---cCChhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcC
Confidence 555 67788999999999999984 33 4566799999999999986 34556777888 99999999
Q ss_pred CCCChHHHHHHHHHhhcC--CCCCEEEccCCCCCchHHHHHHHhhh-cCCCcccEEECcCCCCChhhHHHHHHHH-HhCC
Q 007526 312 NYGGALGANALAKGLEGN--KSLRELHLHGNSIGDEGIRALMSGLS-SRKGKLAVLDIGNNSISAKGAFHVAEYI-KNCK 387 (600)
Q Consensus 312 n~l~~~~~~~l~~~l~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~ 387 (600)
|.++..+ ..+... ++|+.|++++|.+.+.. ..+...+. ...++|+.|++++|.++. ++..+ ..++
T Consensus 629 N~L~~lp-----~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~ 697 (876)
T 4ecn_A 629 NKLKYIP-----NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGS 697 (876)
T ss_dssp SCCCSCC-----SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTC
T ss_pred CCCCcCc-----hhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCC
Confidence 9987432 333333 34999999999987531 11110010 122479999999999996 44444 5789
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhhc--------CCCccEEEccCCCCChHHHHHHHHHhh--cCCCcCEEECcCCCCCh
Q 007526 388 SLLWINLYMNDIGDEGAEKIADALKQ--------NRTITTIDLGGNNIHSKGASAIARVLK--DNSVITSLDLAYNPIGA 457 (600)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~--------~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~ 457 (600)
+|++|+|++|.++. ++..+.. +++|++|+|++|+++. ++..+. .+++|+.|+|++|.|+.
T Consensus 698 ~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 698 PISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc
Confidence 99999999999884 3333322 2389999999999984 445555 67999999999999975
Q ss_pred hHHHHHHHHHhhCCCccEEeccC------cCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCcccc
Q 007526 458 DGAKALSEVLKFHGNINTLKLGW------CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT 531 (600)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~l~~------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~ 531 (600)
+...+..+++|+.|++++ |.+....+ ..+..+++|++|+|++|.++..+. .+ .++|+
T Consensus 768 -----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N~L~~Ip~-----~l---~~~L~ 830 (876)
T 4ecn_A 768 -----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSNDIRKVDE-----KL---TPQLY 830 (876)
T ss_dssp -----CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC----TTGGGCSSCCEEECCSSCCCBCCS-----CC---CSSSC
T ss_pred -----cchhhhcCCCCCEEECCCCCCcccccccccCh----HHHhcCCCCCEEECCCCCCCccCH-----hh---cCCCC
Confidence 334456789999999977 66655433 345667999999999999965322 12 26899
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526 532 SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (600)
Q Consensus 532 ~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 572 (600)
.|||++|+|....+..+..... +..+.|.+|+..+
T Consensus 831 ~LdLs~N~l~~i~~~~~~~~~~------~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 831 ILDIADNPNISIDVTSVCPYIE------AGMYVLLYDKTQD 865 (876)
T ss_dssp EEECCSCTTCEEECGGGHHHHH------TTCCEEECCTTSE
T ss_pred EEECCCCCCCccChHHcccccc------chheeecCCCccc
Confidence 9999999998766665655555 5556666665443
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.4e-29 Score=278.46 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=61.6
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
+..+++|++|+|++|.+... .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.+....
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~--- 144 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLASLES----FPIGQLITLKKLNVAHNFIHSCK--- 144 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCC----CTTSSTTCTTCCEEECTTSCCCCSSS----SCCTTCTTCCEEECCSSCCCCCC---
T ss_pred hhchhhcCEeECCCCccccc----ChhhcCCcccCCEEEccCCccccccc----cccCCCCCCCEEeCCCCccccee---
Confidence 34677788888888877653 13456677788888888887653221 12456677888888887775411
Q ss_pred HHHHHhhCCCcCEEEeecCCCChHH
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDEG 262 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~ 262 (600)
++..+..+++|++|++++|+++...
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred chHhHhhcCCCCEEEccCCcceecC
Confidence 3445666777888888887776543
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.3e-27 Score=259.57 Aligned_cols=318 Identities=14% Similarity=0.157 Sum_probs=203.7
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
+..+++|++|+|++|.+.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.++..+
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~--- 114 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLSSLSS----SWFGPLSSLKYLNLMGNPYQTLG--- 114 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCSCCH----HHHTTCTTCCEEECTTCCCSSSC---
T ss_pred hhcCCcccEEECCCCCcCccC----hhhccccccCCEEECCCCccCccCH----HHhccCCCCcEEECCCCcccccc---
Confidence 456788888888888887531 3456777888888888888765432 23466788888888888876421
Q ss_pred HHHHHhhCCCcCEEEeecCC-CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 238 LCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 316 (600)
++..+..+++|++|++++|. ++.... ..+..+++|++|++++|.++.. ++..+..+++|++|++++|.++.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIKALSLRNY----QSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSBSTT
T ss_pred hhhhhhccCCccEEECCCCccccccCH----hhhhcccccCeeeccCCccccc----ChhhhhccccCceEecccCcccc
Confidence 12345567888888888887 443211 2345568888999998888643 24456678889999999888765
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHh-----------
Q 007526 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN----------- 385 (600)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~----------- 385 (600)
.+.. .+..+++|++|++++|.+++..+... .+....++|+.|++++|.+++.....+...+..
T Consensus 187 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 187 LLEI----FADILSSVRYLELRDTNLARFQFSPL--PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp HHHH----HHHSTTTBSEEEEESCBCTTCCCCCC--SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cchh----hHhhcccccEEEccCCcccccccccc--chhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 5432 23468899999999998765210000 011122355566666555555444433333333
Q ss_pred ------------------------------------------------CCCCcEEEccCCCCChHHHHHHHHHh-hcCCC
Q 007526 386 ------------------------------------------------CKSLLWINLYMNDIGDEGAEKIADAL-KQNRT 416 (600)
Q Consensus 386 ------------------------------------------------~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~ 416 (600)
.++|++|++++|.+.. ++..+ ..+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-----ip~~~~~~l~~ 335 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-----VPCSFSQHLKS 335 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-----CCHHHHHHCTT
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-----CCHHHHhcCcc
Confidence 3455566666665553 22333 35788
Q ss_pred ccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHh
Q 007526 417 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496 (600)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~ 496 (600)
|++|++++|.+++..... ...+..+++|++|++++|.+++... ....+..+++|++|++++|+++... ..+.
T Consensus 336 L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~~~ 407 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEILLTLKNLTSLDISRNTFHPMP-----DSCQ 407 (549)
T ss_dssp CCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHHGGGCTTCCEEECTTCCCCCCC-----SCCC
T ss_pred ccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhhhhcCCCCCEEECCCCCCccCC-----hhhc
Confidence 888888888888753221 1224556888888888888876421 2234567888889999888887432 2334
Q ss_pred hCCCccEEEccCCCCCh
Q 007526 497 YNNTISILDLRANGLRD 513 (600)
Q Consensus 497 ~~~~L~~L~Ls~n~i~~ 513 (600)
.+++|++|++++|.++.
T Consensus 408 ~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCTTCCEEECTTSCCSC
T ss_pred ccccccEEECCCCCccc
Confidence 45677777777777664
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2e-28 Score=266.57 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=116.5
Q ss_pred HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHH
Q 007526 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (600)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (600)
..+++|++|++++|.+++. ++..+..+++|++|++++|+++... .++..+..+++|++|++++|.++.....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~-- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYD-- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSS--
T ss_pred cCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCccCh--
Confidence 4678899999999988874 4455677889999999999988632 2445567779999999999988652110
Q ss_pred HHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (600)
Q Consensus 464 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~ 543 (600)
..+..+++|++|++++|.+++..+..+. ++|++|++++|+|+..... +... ++|++|++++|+|+..
T Consensus 422 -~~~~~l~~L~~L~l~~n~l~~~~~~~l~------~~L~~L~L~~N~l~~ip~~-~~~l-----~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 422 -RTCAWAESILVLNLSSNMLTGSVFRCLP------PKVKVLDLHNNRIMSIPKD-VTHL-----QALQELNVASNQLKSV 488 (562)
T ss_dssp -CCCCCCTTCCEEECCSSCCCGGGGSSCC------TTCSEEECCSSCCCCCCTT-TTSS-----CCCSEEECCSSCCCCC
T ss_pred -hhhcCcccCCEEECCCCCCCcchhhhhc------CcCCEEECCCCcCcccChh-hcCC-----CCCCEEECCCCCCCCC
Confidence 1234567899999999998764332211 5899999999998853222 1122 7899999999999854
Q ss_pred HHHHHHHHHHhCcccceeEEEccCCCCchhHH
Q 007526 544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575 (600)
Q Consensus 544 ~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 575 (600)
....+.. .+ .|+.|++++|++...-.
T Consensus 489 ~~~~~~~----l~--~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 489 PDGVFDR----LT--SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTSTTT----CT--TCCCEECCSCCBCCCHH
T ss_pred CHHHHhc----CC--CCCEEEecCCCcCCCcc
Confidence 4332322 22 39999999999886433
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.9e-29 Score=281.10 Aligned_cols=144 Identities=23% Similarity=0.224 Sum_probs=65.1
Q ss_pred hhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH----HHHhhCCCccEEeccCcCCChh
Q 007526 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS----EVLKFHGNINTLKLGWCQIGAS 486 (600)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~----~~l~~~~~L~~L~l~~n~i~~~ 486 (600)
+..+++|++|++++|.++.... ..+..+++|++|++++|.++......+. ..+..+++|++|++++|.++..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANIND----DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred cccCCCCCEEECCCCCCCcCCh----hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 3344555555555555543211 2233345555555555554432111100 0123445555555555555543
Q ss_pred HHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEcc
Q 007526 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (600)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~ 566 (600)
+... +..+++|++|++++|.++......+... ++|++|++++|+|++.....+...+. .++.|+++
T Consensus 552 ~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~~~~-----~L~~l~l~ 617 (680)
T 1ziw_A 552 PVEV----FKDLFELKIIDLGLNNLNTLPASVFNNQ-----VSLKSLNLQKNLITSVEKKVFGPAFR-----NLTELDMR 617 (680)
T ss_dssp CTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECTTSCCCBCCHHHHHHHHT-----TCSEEECT
T ss_pred CHHH----cccccCcceeECCCCCCCcCCHhHhCCC-----CCCCEEECCCCcCCccChhHhccccc-----ccCEEEcc
Confidence 2222 2334556666666555554332222221 45666666666655544444431222 25566666
Q ss_pred CCCCch
Q 007526 567 NNFLTK 572 (600)
Q Consensus 567 ~n~l~~ 572 (600)
+|++..
T Consensus 618 ~N~~~c 623 (680)
T 1ziw_A 618 FNPFDC 623 (680)
T ss_dssp TCCCCB
T ss_pred CCCccc
Confidence 655543
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.8e-28 Score=273.40 Aligned_cols=384 Identities=17% Similarity=0.176 Sum_probs=257.1
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccC--CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYN--QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~--~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
..++|++|++++|.+.... ...+..+ ++|++|++++|.++.... ..+..+++|++|++++|++...
T Consensus 220 ~~~~L~~L~L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~---- 287 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHL---- 287 (680)
T ss_dssp TTSCCCEEECTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSCCBSEE----
T ss_pred hhccccEEEccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccCc----ccccCcccccEeeCCCCccCcc----
Confidence 3578999999999887542 2233333 459999999998864322 3356778999999999988764
Q ss_pred HHHHHhhCCCcCEEEeecCCCChH-HHHHHHH----HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCC
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDE-GAKAIAE----LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~-~~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 312 (600)
.+..+..+++|+.|++++|..... ....++. .+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCC
Confidence 334556678999999987754321 0001111 3455788999999999887532 334567889999999988
Q ss_pred CCCh--HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHH-HHHHhCCCC
Q 007526 313 YGGA--LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYIKNCKSL 389 (600)
Q Consensus 313 ~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L 389 (600)
.++. .....+. -...++|+.|++++|.++......+ ...++|+.|++++|.++.. ++ ..+..+++|
T Consensus 364 ~~~~~~l~~~~f~--~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~L 432 (680)
T 1ziw_A 364 FTSLRTLTNETFV--SLAHSPLHILNLTKNKISKIESDAF-----SWLGHLEVLDLGLNEIGQE----LTGQEWRGLENI 432 (680)
T ss_dssp BSCCCEECTTTTG--GGTTSCCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSSCCEEE----CCSGGGTTCTTC
T ss_pred chhhhhcchhhhc--ccccCcCceEECCCCCCCeEChhhh-----hCCCCCCEEeCCCCcCccc----cCcccccCcccc
Confidence 6432 1111010 0123579999999998876422222 3445899999999988642 22 346788899
Q ss_pred cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh
Q 007526 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469 (600)
Q Consensus 390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 469 (600)
++|++++|.+.+. ....+..++.|++|++++|.++..+ .++..+..+++|++|++++|.++.... ..+..
T Consensus 433 ~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~--~~p~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~~ 502 (680)
T 1ziw_A 433 FEIYLSYNKYLQL----TRNSFALVPSLQRLMLRRVALKNVD--SSPSPFQPLRNLTILDLSNNNIANIND----DMLEG 502 (680)
T ss_dssp CEEECCSCSEEEC----CTTTTTTCTTCCEEECTTSCCBCTT--CSSCTTTTCTTCCEEECCSSCCCCCCT----TTTTT
T ss_pred cEEecCCCCccee----ChhhhhcCcccccchhccccccccc--cCCcccccCCCCCEEECCCCCCCcCCh----hhhcc
Confidence 9999999987653 2234566789999999998875422 133456677899999999998875432 23456
Q ss_pred CCCccEEeccCcCCChhHHHHHHH----HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHH
Q 007526 470 HGNINTLKLGWCQIGASGAEFVAD----MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 545 (600)
Q Consensus 470 ~~~L~~L~l~~n~i~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~ 545 (600)
+++|++|++++|.++......+.. .+..+++|++|++++|.++......+... ++|++|++++|+|+....
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l-----~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL-----FELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECCSSCCCCCCT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc-----cCcceeECCCCCCCcCCH
Confidence 788999999999887653322111 24567899999999998886544334333 789999999999986554
Q ss_pred HHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHh
Q 007526 546 FAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHS 594 (600)
Q Consensus 546 ~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~ 594 (600)
..+.... +|++|+|++|+++......+.. ....++.++++
T Consensus 578 ~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~---~~~~L~~l~l~ 617 (680)
T 1ziw_A 578 SVFNNQV------SLKSLNLQKNLITSVEKKVFGP---AFRNLTELDMR 617 (680)
T ss_dssp TTTTTCT------TCCEEECTTSCCCBCCHHHHHH---HHTTCSEEECT
T ss_pred hHhCCCC------CCCEEECCCCcCCccChhHhcc---cccccCEEEcc
Confidence 4333222 3999999999998876665431 12445555544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-27 Score=247.69 Aligned_cols=317 Identities=16% Similarity=0.116 Sum_probs=210.1
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (600)
.+++++.|+++++.++... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.++.. .+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~----~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYL----PP 110 (390)
T ss_dssp GGCCCSEEEEESCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCC----CT
T ss_pred ccCCceEEEecCCchhhCC----hhHhcccccCcEEECCCCcccccCh----hhccCCCCcCEEECCCCCCCcC----CH
Confidence 3677888888888776532 2234557888888888888764322 2345678888888888887764 22
Q ss_pred HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (600)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 319 (600)
..+..+++|++|++++|+++.... ..+..+++|++|++++|.++... +..+..+++|++|++++|.++..+
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~- 181 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD- 181 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCC----TTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred HHhcCCCCCCEEECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccC----hhhccCCCCCCEEECCCCcCCccc-
Confidence 345567888888888888775321 22355688888888888876422 234556788888888888877643
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (600)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (600)
+..+++|++|++++|.++.. ...+.|+.|++++|.+... +. ...++|++|++++|.+
T Consensus 182 ------~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 182 ------LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNL 238 (390)
T ss_dssp ------GGGCTTCSEEECCSSCCSEE----------ECCSSCSEEECCSSCCCEE-----EC--CCCSSCCEEECCSSCC
T ss_pred ------cccccccceeeccccccccc----------CCCCcceEEECCCCeeeec-----cc--cccccccEEECCCCCC
Confidence 34567888888888877652 2334788888888877762 21 2346788888888877
Q ss_pred ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (600)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 479 (600)
++. ..+..+++|++|++++|.++... +..+..+++|++|++++|.++... .....+++|++|+++
T Consensus 239 ~~~------~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 239 TDT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECC
T ss_pred ccc------HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCcccC-----cccCCCCCCCEEECC
Confidence 763 34566778888888888777642 234555678888888888776532 112345677777887
Q ss_pred CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHH
Q 007526 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548 (600)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l 548 (600)
+|.++..... +.. +++|++|++++|.|++.. +.. .++|++|++++|++.......+
T Consensus 304 ~n~l~~~~~~-~~~----l~~L~~L~L~~N~i~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 304 HNHLLHVERN-QPQ----FDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SSCCCCCGGG-HHH----HTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHHHH
T ss_pred CCcceecCcc-ccc----cCcCCEEECCCCccceeC---chh-----hccCCEEEcCCCCccchhHHHH
Confidence 7777654322 223 377777777777777643 111 1667777777777776544433
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.9e-29 Score=275.26 Aligned_cols=370 Identities=14% Similarity=0.121 Sum_probs=226.5
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
+..+++|++|+|++|.+.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.++.....
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~- 118 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENF- 118 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTSCCCCSTTC-
T ss_pred hhCCCCceEEECCCCcCCccC----cccccCchhCCEEeCcCCcCCccCH----hhhcCccccccccccccccccCCCc-
Confidence 456788888888888886531 3446678888888888888764322 2355678888888888887653211
Q ss_pred HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCc----cEEEccCCC
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI----RSLHLNGNY 313 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L----~~L~L~~n~ 313 (600)
.+..+++|++|++++|.++... ++..+.++++|++|++++|.++..... .+..+.+| +.|++++|.
T Consensus 119 ---~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 119 ---PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp ---SCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEECGG----GGHHHHTCTTCCCEEECTTCC
T ss_pred ---cccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceecHH----HccchhccchhhhhcccCCCC
Confidence 2556788899999888876521 234456678899999998888653211 11122223 445555444
Q ss_pred CChHHHHH------------------------------------------------------------------------
Q 007526 314 GGALGANA------------------------------------------------------------------------ 321 (600)
Q Consensus 314 l~~~~~~~------------------------------------------------------------------------ 321 (600)
++......
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 33211100
Q ss_pred -----HHHHhhcCCCCCEEEccCCCCCchHH--H---------------HHHH-hhh------------------cCCCc
Q 007526 322 -----LAKGLEGNKSLRELHLHGNSIGDEGI--R---------------ALMS-GLS------------------SRKGK 360 (600)
Q Consensus 322 -----l~~~l~~~~~L~~L~Ls~n~l~~~~~--~---------------~l~~-~l~------------------~~~~~ 360 (600)
++..+..+++|++|++++|.+..... . .+.. .+. ...++
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence 00112233455555555544332000 0 0000 000 12345
Q ss_pred ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440 (600)
Q Consensus 361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 440 (600)
|+.|++++|.++..+. .+..+..+++|++|++++|.+.+. +..+..+++|++|++++|.++.... ...+.
T Consensus 349 L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~ 418 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE---FSVFL 418 (570)
T ss_dssp CCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESCTT---SCTTT
T ss_pred CCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccccc---hhhhh
Confidence 6666666666654210 124456677777777777766552 2225556778888888777654311 12345
Q ss_pred cCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHH
Q 007526 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA 520 (600)
Q Consensus 441 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 520 (600)
.+++|++|++++|.+.... ...+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++..+..+.
T Consensus 419 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cCCCCCEEeCcCCcccccc----hhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCChhhhh
Confidence 6688888888888776542 233456789999999999876311 123456679999999999999986555555
Q ss_pred HHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526 521 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574 (600)
Q Consensus 521 ~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 574 (600)
.. ++|++|++++|++++..+..+..+ + +|++|++++|+++...
T Consensus 492 ~l-----~~L~~L~l~~n~l~~~~~~~~~~l----~--~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 492 SL-----SSLQVLNMASNQLKSVPDGIFDRL----T--SLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TC-----TTCCEEECCSSCCSCCCTTTTTTC----T--TCCEEECCSSCBCCCT
T ss_pred cc-----cCCCEEeCCCCcCCCCCHHHhhcc----c--CCcEEEecCCcccCCC
Confidence 43 789999999999987655444332 2 3999999999988643
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=5.6e-27 Score=243.18 Aligned_cols=315 Identities=18% Similarity=0.152 Sum_probs=244.2
Q ss_pred CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (600)
Q Consensus 189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (600)
..+++.|++++|.++..... .+..+++|++|++++|.+++.. ...+..+++|++|++++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccC----hhhccCCCCcCEEECCCCCCCcCC----HH
Confidence 47999999999987654332 2456789999999999998642 234566799999999999988743 23
Q ss_pred HHhcCCCccEEeecCCCCChhhHHHHHH-HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHH
Q 007526 269 LLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 347 (600)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 347 (600)
.+..+++|++|++++|.++. ++. .+..+++|++|++++|.++.... ..+..+++|++|++++|.++..++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~ 182 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL 182 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCG
T ss_pred HhcCCCCCCEEECCCCccCc-----CCHHHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCcccc
Confidence 35667999999999999863 232 24678999999999999876543 346688999999999999987532
Q ss_pred HHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCC
Q 007526 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (600)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (600)
...++|+.|++++|.++.. ...++|++|++++|.+... + ....++|++|++++|.+
T Consensus 183 --------~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~-----~--~~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 183 --------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVV-----R--GPVNVELTILKLQHNNL 238 (390)
T ss_dssp --------GGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEE-----E--CCCCSSCCEEECCSSCC
T ss_pred --------ccccccceeeccccccccc---------CCCCcceEEECCCCeeeec-----c--ccccccccEEECCCCCC
Confidence 2345899999999998872 4567899999999999873 1 12357999999999999
Q ss_pred ChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (600)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (600)
++. ..+..+++|++|++++|.+++... ..+..+++|++|++++|.++.... .+..+++|++|+++
T Consensus 239 ~~~------~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 239 TDT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLS 303 (390)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECC
T ss_pred ccc------HHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECC
Confidence 874 356778999999999999987533 334678899999999999987532 22456999999999
Q ss_pred CCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578 (600)
Q Consensus 508 ~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 578 (600)
+|.++.... .+... ++|++|++++|+|+.... ...+ .|++|++++|++.......+
T Consensus 304 ~n~l~~~~~-~~~~l-----~~L~~L~L~~N~i~~~~~-------~~~~--~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 304 HNHLLHVER-NQPQF-----DRLENLYLDHNSIVTLKL-------STHH--TLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SSCCCCCGG-GHHHH-----TTCSEEECCSSCCCCCCC-------CTTC--CCSEEECCSSCEEHHHHHHH
T ss_pred CCcceecCc-ccccc-----CcCCEEECCCCccceeCc-------hhhc--cCCEEEcCCCCccchhHHHH
Confidence 999986432 24444 789999999999987531 2223 49999999999998765543
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3e-28 Score=259.72 Aligned_cols=208 Identities=18% Similarity=0.167 Sum_probs=91.9
Q ss_pred hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (600)
Q Consensus 300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l 379 (600)
.+++|++|++++|.++.... ..+..+++|++|++++|.++......+ ...++|+.|++++|.+... .
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~----~ 192 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISH----RAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI----R 192 (477)
T ss_dssp TCTTCCEEEECCTTCCEECT----TSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE----C
T ss_pred ccccCCEEECCCCccceeCh----hhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe----C
Confidence 34444444444444433221 123344455555555554443222111 1223455555555544432 1
Q ss_pred HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (600)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (600)
+..+..+++|++|++++|.+.+. ++.......+|++|++++|.++.... ..+..+++|++|+|++|.++...
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEEC
T ss_pred hhhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCccC
Confidence 11234445555555555533221 11112223355555555555554322 12333455555555555554432
Q ss_pred HHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (600)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~ 539 (600)
. ..+..+++|++|++++|.++...+.. +..+++|++|++++|.|+......+..+ ++|++|++++|.
T Consensus 265 ~----~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 G----SMLHELLRLQEIQLVGGQLAVVEPYA----FRGLNYLRVLNVSGNQLTTLEESVFHSV-----GNLETLILDSNP 331 (477)
T ss_dssp T----TSCTTCTTCCEEECCSSCCSEECTTT----BTTCTTCCEEECCSSCCSCCCGGGBSCG-----GGCCEEECCSSC
T ss_pred h----hhccccccCCEEECCCCccceECHHH----hcCcccCCEEECCCCcCceeCHhHcCCC-----cccCEEEccCCC
Confidence 2 11234455555555555555543322 2334556666666655554332222222 455566666655
Q ss_pred CC
Q 007526 540 IR 541 (600)
Q Consensus 540 i~ 541 (600)
+.
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=8.5e-28 Score=273.48 Aligned_cols=311 Identities=16% Similarity=0.116 Sum_probs=171.4
Q ss_pred HhCCCccEEEcCCCCCCHHHHHHH-HHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 159 KELRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l-~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
..+++|++|+|++|.+... + ...+..+++|++|+|++|.++.. .+..+..+++|++|+|++|.+++....
T Consensus 45 ~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~- 115 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLK- 115 (844)
T ss_dssp SSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCST-
T ss_pred cccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCccccc-
Confidence 3566666777766633110 1 23455666777777777766532 123345566677777777666542100
Q ss_pred HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 317 (600)
...+..+++|++|+|++|.++... .+..+.++++|++|++++|.++......+.. +. .++|+.|++++|.+...
T Consensus 116 -~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~-~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 116 -DGYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQ-GKTLSFFSLAANSLYSR 189 (844)
T ss_dssp -TCCCSSCSSCCEEEEESCCCCCCC---CCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HH-HCSSCCCEECCSBSCCC
T ss_pred -CccccccCCCCEEECCCCcccccc---cchhHhhCCCCCEEECCCCcCCeeCHHHccc-cc-CCccceEECCCCccccc
Confidence 011445566777777777665421 1123445567777777777665422111111 00 15566666665554331
Q ss_pred HHHHHHHHhhcCC------CCCEEEccCCCCCchHHHHHHHhhh---------------------------------cCC
Q 007526 318 GANALAKGLEGNK------SLRELHLHGNSIGDEGIRALMSGLS---------------------------------SRK 358 (600)
Q Consensus 318 ~~~~l~~~l~~~~------~L~~L~Ls~n~l~~~~~~~l~~~l~---------------------------------~~~ 358 (600)
.. ..+..++ .|+.|++++|.++......+...+. ...
T Consensus 190 ~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 190 VS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp CC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cc----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 11 0111222 3777788777655432222211110 001
Q ss_pred CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
++|+.|++++|.+... .+..+..+++|++|+|++|.++.. .+..+..+++|++|++++|.++... +..
T Consensus 266 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGELY----SSN 333 (844)
T ss_dssp SCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCCC----SCS
T ss_pred CCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCccC----HHH
Confidence 4677888888877653 234456677888888888877764 2344566778888888888776532 233
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
+..+++|++|++++|.++..... .+..+++|++|++++|.++.... +++|+.|++++|.++.
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~---------~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQ----TFKFLEKLQTLDLRDNALTTIHF---------IPSIPDIFLSGNKLVT 395 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSS----CSCSCCCCCEEEEETCCSCCCSS---------CCSCSEEEEESCCCCC
T ss_pred hcCCCCCCEEECCCCCCCccChh----hhcCCCCCCEEECCCCCCCcccC---------CCCcchhccCCCCccc
Confidence 45567788888888877554221 23456778888888877765321 3566666666665553
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.1e-27 Score=255.43 Aligned_cols=283 Identities=15% Similarity=0.083 Sum_probs=198.6
Q ss_pred hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHH
Q 007526 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALA 323 (600)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 323 (600)
.+++|++|+|++|.++... +..+.++++|++|+|++|.++... ...+..+++|++|++++|.++....
T Consensus 54 ~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~---- 121 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRLKLIP----LGVFTGLSNLTKLDISENKIVILLD---- 121 (477)
T ss_dssp TCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCC----TTSSTTCTTCCEEECTTSCCCEECT----
T ss_pred CCCCCCEEECCCCccCEeC----hhhhhCCccCCEEECCCCcCCccC----cccccCCCCCCEEECCCCccccCCh----
Confidence 3455555555555544421 122334456666666666554211 1123456677777777777654432
Q ss_pred HHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHH
Q 007526 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403 (600)
Q Consensus 324 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 403 (600)
..+..+++|++|++++|.+.......+ ...++|+.|++++|.++.. .+..+..+++|+.|++++|.+...
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~- 191 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAF-----SGLNSLEQLTLEKCNLTSI----PTEALSHLHGLIVLRLRHLNINAI- 191 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSS-----TTCTTCCEEEEESCCCSSC----CHHHHTTCTTCCEEEEESCCCCEE-
T ss_pred hHccccccCCEEECCCCccceeChhhc-----cCCCCCCEEECCCCcCccc----ChhHhcccCCCcEEeCCCCcCcEe-
Confidence 345688999999999999876432222 3445899999999999874 345678999999999999998874
Q ss_pred HHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCC
Q 007526 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (600)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 483 (600)
....+..+++|++|++++|.+... +........+|++|++++|.++..... .+..+++|++|++++|.+
T Consensus 192 ---~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 192 ---RDYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTAVPYL----AVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp ---CTTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCSCCHH----HHTTCTTCCEEECCSSCC
T ss_pred ---ChhhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccccCHH----HhcCccccCeeECCCCcC
Confidence 223566789999999999876442 112222336899999999999865433 346789999999999999
Q ss_pred ChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEE
Q 007526 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563 (600)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L 563 (600)
+...... +..+++|++|+|++|.+++..+..+... ++|++|++++|+|++.....+..+. .|++|
T Consensus 261 ~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L 325 (477)
T 2id5_A 261 STIEGSM----LHELLRLQEIQLVGGQLAVVEPYAFRGL-----NYLRVLNVSGNQLTTLEESVFHSVG------NLETL 325 (477)
T ss_dssp CEECTTS----CTTCTTCCEEECCSSCCSEECTTTBTTC-----TTCCEEECCSSCCSCCCGGGBSCGG------GCCEE
T ss_pred CccChhh----ccccccCCEEECCCCccceECHHHhcCc-----ccCCEEECCCCcCceeCHhHcCCCc------ccCEE
Confidence 8775544 4556999999999999998655555443 7899999999999976554443332 39999
Q ss_pred EccCCCCchhH
Q 007526 564 NLANNFLTKFG 574 (600)
Q Consensus 564 ~l~~n~l~~~~ 574 (600)
+|++|++....
T Consensus 326 ~l~~N~l~c~c 336 (477)
T 2id5_A 326 ILDSNPLACDC 336 (477)
T ss_dssp ECCSSCEECSG
T ss_pred EccCCCccCcc
Confidence 99999988653
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=6.1e-27 Score=254.75 Aligned_cols=364 Identities=16% Similarity=0.160 Sum_probs=227.1
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (600)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (600)
+++++|+|++|.+.... ...+..+++|++|++++|.++... +..+..+++|++|++++|+++.. +..
T Consensus 52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l-----p~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLD----FHVFLFNQDLEYLDVSHNRLQNI-----SCC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEEC----TTTTTTCTTCCEEECTTSCCCEE-----CSC
T ss_pred CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCC----HHHhCCCCCCCEEECCCCcCCcc-----Ccc
Confidence 67888888888776531 245667788888888888876432 23345667888888888887642 222
Q ss_pred HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCc--cEEEccCCCC--ChH
Q 007526 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (600)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~l--~~~ 317 (600)
.+++|++|++++|+++... ++..+.++++|++|++++|.++..+ +..++.| ++|++++|.+ +..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC---CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCccccC---chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeeccccccccc
Confidence 5678888888888876521 1134556678888888888876532 2334444 8888888776 322
Q ss_pred HHHHHHH----------------------HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhh
Q 007526 318 GANALAK----------------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (600)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 375 (600)
....+.. .+..+++|+.|++++|...-..+......+. ..+.|+.|++.++.+....
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~-~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT-RGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH-SCSSCEEEEEEEEEECHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh-ccCcceEEEecCCcCcHHH
Confidence 1111100 0112345666777766543333333333343 3457888888888888777
Q ss_pred HHHHHHHHHhCCCCcEEEccCCCCChHHH----------------------------HHHHHHh----------------
Q 007526 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGA----------------------------EKIADAL---------------- 411 (600)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~----------------------------~~l~~~l---------------- 411 (600)
...++..+. .++|++|++++|.+.+... ..+...+
T Consensus 266 ~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 666665543 4589999999887663100 1111111
Q ss_pred -----hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh-
Q 007526 412 -----KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA- 485 (600)
Q Consensus 412 -----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~- 485 (600)
..+++|++|++++|.+++. ++..+..+++|++|++++|.++.. ..+...+..+++|++|++++|.++.
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cccCccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCc
Confidence 4567788888888887763 234455668888888888887753 1233445667788888888888765
Q ss_pred hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEc
Q 007526 486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNL 565 (600)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l 565 (600)
.... .+..+++|++|++++|.+++..+..+ .++|++|++++|+|+.... .+. ..+ .|++|+|
T Consensus 419 ~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~l-------~~~L~~L~L~~N~l~~ip~-~~~----~l~--~L~~L~L 480 (562)
T 3a79_B 419 AYDR----TCAWAESILVLNLSSNMLTGSVFRCL-------PPKVKVLDLHNNRIMSIPK-DVT----HLQ--ALQELNV 480 (562)
T ss_dssp CSSC----CCCCCTTCCEEECCSSCCCGGGGSSC-------CTTCSEEECCSSCCCCCCT-TTT----SSC--CCSEEEC
T ss_pred cChh----hhcCcccCCEEECCCCCCCcchhhhh-------cCcCCEEECCCCcCcccCh-hhc----CCC--CCCEEEC
Confidence 3221 23345788888888888876432211 1578999999998884222 121 222 3899999
Q ss_pred cCCCCchhHHH
Q 007526 566 ANNFLTKFGQV 576 (600)
Q Consensus 566 ~~n~l~~~~~~ 576 (600)
++|+++..+..
T Consensus 481 ~~N~l~~l~~~ 491 (562)
T 3a79_B 481 ASNQLKSVPDG 491 (562)
T ss_dssp CSSCCCCCCTT
T ss_pred CCCCCCCCCHH
Confidence 99998876554
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-26 Score=253.34 Aligned_cols=314 Identities=16% Similarity=0.105 Sum_probs=196.8
Q ss_pred CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (600)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (600)
+++++.++++++.++... ...+..+++|++|+|++|.++.... ..+..+++|++|+|++|.++.. .+.
T Consensus 50 l~~l~~l~l~~~~l~~lp----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYL----PPH 117 (597)
T ss_dssp GCCCSEEEESSCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCceEEEeeCCCCCCcC----HHHHccCCCCcEEECCCCCCCCCCh----HHhcCCCCCCEEECCCCcCCCC----CHH
Confidence 566777777777665532 2234456777888887777654321 2345667788888877777653 223
Q ss_pred HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHH
Q 007526 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (600)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 320 (600)
.+..+++|++|+|++|.++... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|.++..+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC--
Confidence 3455677788888877776521 12234567778888887777532 2334556777888888877776543
Q ss_pred HHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCC
Q 007526 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (600)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (600)
+..+++|+.|++++|.++.. .....|+.|++++|.++.. +. ...++|+.|++++|.++
T Consensus 188 -----~~~l~~L~~L~l~~n~l~~l----------~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 188 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 245 (597)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----------ECCTTCSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCC
T ss_pred -----hhhhhhhhhhhcccCccccc----------cCCchhheeeccCCccccc-----cc--ccCCCCCEEECCCCCCC
Confidence 33567777778877777652 2233677777777777652 11 12356777777777777
Q ss_pred hHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccC
Q 007526 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (600)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 480 (600)
+. ..+..+++|++|++++|.++... +..+..+++|++|+|++|.++... ..+..+++|++|++++
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCS
T ss_pred CC------hhhccCCCCCEEECCCCccCCCC----HHHhcCccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCC
Confidence 63 34566777777777777776642 234455677777777777776531 1223466777777777
Q ss_pred cCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHH
Q 007526 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546 (600)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~ 546 (600)
|.++..+. .+.. +++|++|+|++|.++... +.. .++|++|++++|++......
T Consensus 311 N~l~~i~~-~~~~----l~~L~~L~L~~N~l~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 311 NHLLHVER-NQPQ----FDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp SCCCCCGG-GHHH----HTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHH
T ss_pred CCCCccCc-cccc----CCCCCEEECCCCCCCCcC---hhh-----cCCCCEEEeeCCCCCChhHH
Confidence 77765432 2222 377777777777776643 111 16677777777777765433
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.6e-25 Score=236.22 Aligned_cols=302 Identities=17% Similarity=0.161 Sum_probs=223.6
Q ss_pred HhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007526 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (600)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (600)
..+++|++|++++|.+.+. + .+..+++|++|++++|.++.. . +..+++|++|++++|.++...
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-----~-~l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-----T-GIEKLTGLTKLICTSNNITTL-----D--LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-----T-TGGGCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCCC----
T ss_pred hHcCCCCEEEccCCCcccC-----h-hhcccCCCCEEEccCCcCCeE-----c--cccCCCCCEEECcCCCCceee----
Confidence 3578999999999999863 2 477889999999999998763 1 567899999999999998741
Q ss_pred HHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCC-CChH
Q 007526 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGAL 317 (600)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~ 317 (600)
+..+++|++|++++|+++.. . +..+++|++|++++|.+++. .+..+++|++|++++|. ++..
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l-----~--~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKL-----D--VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC-----C--CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC
T ss_pred ---cCCCCcCCEEECCCCcCCee-----c--CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc
Confidence 56789999999999999874 1 56779999999999999763 25678999999999994 4432
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (600)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (600)
.+..+++|++|++++|.+++.. + ...++|+.|++++|.++.. .+..+++|++|++++|
T Consensus 165 -------~~~~l~~L~~L~ls~n~l~~l~-------l-~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 -------DVTPQTQLTTLDCSFNKITELD-------V-SQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp -------CCTTCTTCCEEECCSSCCCCCC-------C-TTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSS
T ss_pred -------ccccCCcCCEEECCCCccceec-------c-ccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCC
Confidence 2557899999999999998742 2 3445899999999999873 2678899999999999
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH------HHHHHHhhCC
Q 007526 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK------ALSEVLKFHG 471 (600)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------~l~~~l~~~~ 471 (600)
.+++ ++ +..+++|++|++++|.++... +..+++|+.|++++|.+...... .+. ...++
T Consensus 223 ~l~~-----ip--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 223 KLTE-----ID--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp CCSC-----CC--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred cccc-----cC--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccc
Confidence 9988 33 667899999999999998742 33456666666655543221100 000 23567
Q ss_pred CccEEeccCcCCChhHH------HHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526 472 NINTLKLGWCQIGASGA------EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (600)
Q Consensus 472 ~L~~L~l~~n~i~~~~~------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~ 542 (600)
+|+.|++++|.....-+ ..+ .+..+++|++|++++|.+++.. +..+ +.|++|++++|+|++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~---l~~l-----~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD---VSHN-----TKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC---CTTC-----TTCSEEECCSSCCCB
T ss_pred cCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCCcccccc---cccC-----CcCcEEECCCCCCCC
Confidence 88888888885322110 000 1445678888888888877741 3222 678888888888876
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.7e-26 Score=247.55 Aligned_cols=314 Identities=18% Similarity=0.154 Sum_probs=242.8
Q ss_pred CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (600)
Q Consensus 189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (600)
+.+++.+++++|.++..... .+..+++|++|+|++|.++.. ....+..+++|++|+|++|.++... +.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~----~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEI----DTYAFAYAHTIQKLYMGFNAIRYLP----PH 117 (597)
T ss_dssp GCCCSEEEESSCEESEECTH----HHHHCCCCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCceEEEeeCCCCCCcCHH----HHccCCCCcEEECCCCCCCCC----ChHHhcCCCCCCEEECCCCcCCCCC----HH
Confidence 46899999999987654332 245678999999999999874 2235567899999999999988743 23
Q ss_pred HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHH
Q 007526 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (600)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 348 (600)
.+..+++|++|+|++|.++... +..+..+++|++|++++|.++.... ..+..+++|++|++++|.+++..+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~- 188 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL- 188 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECTTSCCSBCCG-
T ss_pred HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECcCCCCCCcCh-
Confidence 3466799999999999986321 2234678999999999999876543 346688999999999999987532
Q ss_pred HHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (600)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (600)
...++|+.|++++|.++. +...++|++|++++|.+... .. ...++|+.|++++|.++
T Consensus 189 -------~~l~~L~~L~l~~n~l~~---------l~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 189 -------SLIPSLFHANVSYNLLST---------LAIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 245 (597)
T ss_dssp -------GGCTTCSEEECCSSCCSE---------EECCTTCSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCC
T ss_pred -------hhhhhhhhhhcccCcccc---------ccCCchhheeeccCCccccc-----cc--ccCCCCCEEECCCCCCC
Confidence 234589999999999987 24567899999999998763 11 12478999999999998
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccC
Q 007526 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (600)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 508 (600)
+. ..+..+++|++|+|++|.+++... ..+..+++|++|++++|.++..+. .+..+++|++|+|++
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH 310 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred CC------hhhccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECCC
Confidence 73 456778999999999999987533 334678899999999999987532 224569999999999
Q ss_pred CCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHH
Q 007526 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQV 576 (600)
Q Consensus 509 n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 576 (600)
|.++... ..+..+ ++|++|+|++|.|++... ...+ .|+.|++++|++......
T Consensus 311 N~l~~i~-~~~~~l-----~~L~~L~L~~N~l~~~~~-------~~~~--~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 311 NHLLHVE-RNQPQF-----DRLENLYLDHNSIVTLKL-------STHH--TLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp SCCCCCG-GGHHHH-----TTCSEEECCSSCCCCCCC-------CTTC--CCSEEECCSSCEEHHHHH
T ss_pred CCCCccC-cccccC-----CCCCEEECCCCCCCCcCh-------hhcC--CCCEEEeeCCCCCChhHH
Confidence 9998643 234444 889999999999987542 2223 499999999999876543
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.9e-27 Score=270.53 Aligned_cols=286 Identities=19% Similarity=0.152 Sum_probs=166.6
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
+..+++|++|+|++|.+... .+..+..+++|++|+|++|.++...... ..+..+++|++|+|++|.++...
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~--- 139 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLY--- 139 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCC---
T ss_pred hcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccc---
Confidence 45788899999999988763 2456778899999999999886321111 12567889999999999886532
Q ss_pred HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCC------CccEEEccC
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS------TIRSLHLNG 311 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~------~L~~L~L~~ 311 (600)
.+..+.++++|++|++++|.++......+..... ++|+.|++++|.++... +..+..+. .|+.|++++
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSS
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcccccc----ccchhhcCCccccCceeEEecCC
Confidence 1235667899999999999887644334433321 56677777766654311 11111111 366666666
Q ss_pred CCCChHHHHHHHHH--------------------------------hhc--CCCCCEEEccCCCCCchHHHHHHHhhhcC
Q 007526 312 NYGGALGANALAKG--------------------------------LEG--NKSLRELHLHGNSIGDEGIRALMSGLSSR 357 (600)
Q Consensus 312 n~l~~~~~~~l~~~--------------------------------l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 357 (600)
|.++......+... +.. .++|++|++++|.+...... .+ ..
T Consensus 214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~----~~-~~ 288 (844)
T 3j0a_A 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR----VF-ET 288 (844)
T ss_dssp CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC----CS-SS
T ss_pred CcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh----hh-hc
Confidence 65433221111111 111 24577777777766543111 11 23
Q ss_pred CCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (600)
Q Consensus 358 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 437 (600)
.++|+.|++++|.++.. .+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.++.... .
T Consensus 289 l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~----~ 356 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAIIQD----Q 356 (844)
T ss_dssp CCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCCCS----S
T ss_pred CCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCccCh----h
Confidence 34677777777766653 233455666777777777766542 22345556667777777776654321 2
Q ss_pred HhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526 438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (600)
Q Consensus 438 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 484 (600)
.+..+++|++|+|++|.++.. ..+++|+.|++++|.++
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~~i---------~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALTTI---------HFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CSCSCCCCCEEEEETCCSCCC---------SSCCSCSEEEEESCCCC
T ss_pred hhcCCCCCCEEECCCCCCCcc---------cCCCCcchhccCCCCcc
Confidence 234456677777776666532 11345555555555544
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.5e-27 Score=256.53 Aligned_cols=189 Identities=16% Similarity=0.192 Sum_probs=142.8
Q ss_pred hcCCCCCEEEccCCCCCchH--HHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHH
Q 007526 327 EGNKSLRELHLHGNSIGDEG--IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (600)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (600)
..+++|++|++++|.++..+ ...+ ...++|++|++++|.+.. ++..+..+++|++|++++|.+.+...
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSD-----FGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHH-----HTCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccc-----cccCccCEEECCCCcccc-----ccccccccCCCCEEEccCCccccccc
Confidence 35678899999999887542 1122 234589999999999877 33336789999999999998765311
Q ss_pred HHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (600)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 484 (600)
...+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+.. +...+..+++|++|++++|.++
T Consensus 414 ---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 414 ---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp ---SCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCC
T ss_pred ---hhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccc
Confidence 12466789999999999998764 2344666799999999999886321 2234567899999999999998
Q ss_pred hhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhH
Q 007526 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG 544 (600)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~ 544 (600)
+..+.. +..+++|++|++++|.+++.....+... ++|++|++++|++++..
T Consensus 484 ~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 484 QLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCCT
T ss_pred cCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhcc-----cCCcEEEecCCcccCCC
Confidence 875544 4456999999999999998655444443 78999999999998643
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=5e-25 Score=232.37 Aligned_cols=315 Identities=17% Similarity=0.175 Sum_probs=234.6
Q ss_pred HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (600)
+..+++|++|++++|.++.. . +..+++|++|++++|.++... +..+++|++|++++|+++..
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l---- 121 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-----D--LSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKL---- 121 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCC----
T ss_pred hcccCCCCEEEccCCcCCeE-----c--cccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCee----
Confidence 45789999999999999873 2 677899999999999987531 56789999999999999863
Q ss_pred HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC-CChhhHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (600)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 316 (600)
. +..+++|++|++++|+++... +..+++|++|++++|. ++.. .+..+++|++|++++|.++.
T Consensus 122 -~--~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 122 -D--VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp -C--CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCC
T ss_pred -c--CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCccce
Confidence 1 567899999999999998741 5567999999999994 4322 24578999999999999887
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccC
Q 007526 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (600)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (600)
.+ +..+++|++|++++|.+++.. + ...++|+.|++++|.++. ++ +..+++|++|++++
T Consensus 185 l~-------l~~l~~L~~L~l~~N~l~~~~-------l-~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 185 LD-------VSQNKLLNRLNCDTNNITKLD-------L-NQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CC-------CTTCTTCCEEECCSSCCSCCC-------C-TTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCS
T ss_pred ec-------cccCCCCCEEECcCCcCCeec-------c-ccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeC
Confidence 43 567899999999999998752 2 344689999999999988 44 67899999999999
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH------HHHHHhhcCCCcCEEECcCCCCChhH------HHHHH
Q 007526 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS------AIARVLKDNSVITSLDLAYNPIGADG------AKALS 464 (600)
Q Consensus 397 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i~~~~------~~~l~ 464 (600)
|.+++.. +..+++|+.|++++|.+...... .++ ...+++|+.|++++|.....- ...+
T Consensus 243 N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L- 312 (457)
T 3bz5_A 243 NPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL- 312 (457)
T ss_dssp SCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred CcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-
Confidence 9998742 33456666555555544321100 011 245689999999999632110 0111
Q ss_pred HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhH
Q 007526 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG 544 (600)
Q Consensus 465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~ 544 (600)
.+..+++|++|++++|++++.. +..+++|+.|++++|++++. +.|..|++++|.+.+.+
T Consensus 313 -~l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N~l~~l-------------~~L~~L~l~~n~l~g~~ 371 (457)
T 3bz5_A 313 -DLSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNAHIQDF-------------SSVGKIPALNNNFEAEG 371 (457)
T ss_dssp -CCTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSSCCCBC-------------TTGGGSSGGGTSEEEEE
T ss_pred -chhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCCCCCCc-------------cccccccccCCcEEecc
Confidence 1456789999999999998852 56789999999999999972 44666677777776541
Q ss_pred HHHHHHHHHhCcccceeEEEccCCCCc
Q 007526 545 AFAIAQALKANEDVAVTSLNLANNFLT 571 (600)
Q Consensus 545 ~~~l~~~~~~~~~~~L~~L~l~~n~l~ 571 (600)
.. ..+..+++++|.++
T Consensus 372 ---------~~--~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 372 ---------QT--ITMPKETLTNNSLT 387 (457)
T ss_dssp ---------EE--EECCCBCCBTTBEE
T ss_pred ---------ee--eecCccccccCcEE
Confidence 11 13666777777665
No 47
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.89 E-value=7.9e-22 Score=201.62 Aligned_cols=214 Identities=20% Similarity=0.275 Sum_probs=145.5
Q ss_pred CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH
Q 007526 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (600)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (600)
++|++|++++|.+++.+...+...+....+.|++|+|++|.+++.+...+...+. +|++|+|++|.+++.+...+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 4566666666666666666666655544446777777777776665555544433 5677777777777777777777
Q ss_pred Hhh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHH
Q 007526 410 ALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 488 (600)
Q Consensus 410 ~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~ 488 (600)
.+. .+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.++..+...+..+++|++|++++|.|++.+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 664 3677777777777777777777777777777788888888888777777777777777778888888888887777
Q ss_pred HHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE--ccCCCCChhHHH
Q 007526 489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID--LAFNEIRDDGAF 546 (600)
Q Consensus 489 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~--ls~n~i~~~~~~ 546 (600)
..++..+..+++|++|+|++|.|++.++..+........+.|+.+. +..|.+.+....
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~ 288 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence 7777777777888888888888888777777664331112277776 667766654333
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.2e-26 Score=256.36 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=126.4
Q ss_pred CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH--------------------HHHHHhhcCCCcc
Q 007526 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE--------------------KIADALKQNRTIT 418 (600)
Q Consensus 359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~l~~~~~L~ 418 (600)
++|+.|+++.|.+...+. .+.....+.+|+++++..|.+...... .-...+..+++++
T Consensus 371 ~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp TTCCEEECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccchhhccccccccc--cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 468888998887754221 122344555666666555432210000 0011234456777
Q ss_pred EEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhC
Q 007526 419 TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYN 498 (600)
Q Consensus 419 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~ 498 (600)
.+++++|.+.... ...+...+.|++|++++|.+.... ....+..+++|++|++++|+++...+.. +..+
T Consensus 449 ~l~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~L~~l~~~~----f~~l 517 (635)
T 4g8a_A 449 YLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSL 517 (635)
T ss_dssp EEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTC
T ss_pred ccccccccccccc----ccccccchhhhhhhhhhccccccc---CchhhhhccccCEEECCCCccCCcChHH----HcCC
Confidence 7777777765532 223445588999999988643211 1123466789999999999998876544 4456
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526 499 NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574 (600)
Q Consensus 499 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 574 (600)
++|++|+|++|+|+......+... ++|++|||++|+|++..+..+..... +|++|+|++|++.-.-
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~-----~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCL-----NSLQVLDYSLNHIMTSKKQELQHFPS-----SLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTC-----TTCCEEECTTSCCCBCCSSCTTCCCT-----TCCEEECTTCCBCCSG
T ss_pred CCCCEEECCCCcCCCCChhHHhCC-----CCCCEEECCCCcCCCCCHHHHHhhhC-----cCCEEEeeCCCCcccC
Confidence 999999999999988655544443 78999999999999876655543211 4999999999998653
No 49
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=3.2e-21 Score=197.13 Aligned_cols=209 Identities=19% Similarity=0.300 Sum_probs=123.1
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHH
Q 007526 302 STIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (600)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 380 (600)
+.|++|++++|.++..+...++..+... ++|++|+|++|.+++.++..+...+. +|+.|+|++|.+++.+...+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~----~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL----RARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH----TEEEEECCSSCCCHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH----hccHhhcCCCCCCHHHHHHHH
Confidence 3455555555555555555555544433 45666666666666555555554444 466666666666666666565
Q ss_pred HHHH-hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526 381 EYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (600)
Q Consensus 381 ~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (600)
..+. ..++|++|+|++|.|++.+...++.++..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 5553 355666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhC-CCccEEE--ccCCCCChH
Q 007526 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYN-NTISILD--LRANGLRDE 514 (600)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~--Ls~n~i~~~ 514 (600)
...+...+..+++|++|++++|.|++.+...+..+.... ..|+.+. +.+|.+++.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 666666666666666666666666666666665543222 1266666 555666554
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=7.9e-25 Score=221.54 Aligned_cols=247 Identities=21% Similarity=0.210 Sum_probs=152.3
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007526 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (600)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 242 (600)
+++.++++++.+.. ++..+ .+++++|++++|.++.... ..+..+++|++|++++|.++.. .+..+
T Consensus 32 ~l~~l~~~~~~l~~-----lp~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-----VPKDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKI----SPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCS-----CCCSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCB----CTTTT
T ss_pred CCeEEEecCCCccc-----cCccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCee----CHHHh
Confidence 46778888777654 22211 3578888888887764322 2345677888888888877653 23445
Q ss_pred hhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (600)
Q Consensus 243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 322 (600)
..+++|++|++++|.++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|.++..+. .
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~ 163 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-----PEKM--PKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--E 163 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-----CSSC--CTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--C
T ss_pred cCCCCCCEEECCCCcCCcc-----Chhh--cccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--C
Confidence 5667888888888877642 1111 257888888888776432 3345567788888888877754321 1
Q ss_pred HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH
Q 007526 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (600)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (600)
...+..+++|++|++++|.++.. ... ..++|++|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l-----~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTI-----PQG---LPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSC-----CSS---CCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCCCCcCEEECCCCccccC-----Ccc---ccccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence 13455677788888887776642 111 113677777777777653 234456667777777777776653
Q ss_pred HHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526 403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (600)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (600)
....+..+++|++|++++|.++. ++..+..+++|++|++++|+|+..
T Consensus 232 ----~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 232 ----DNGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp ----CTTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCC
T ss_pred ----ChhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCcc
Confidence 12234556667777777776663 333445556666666666666544
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.8e-24 Score=217.88 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=95.2
Q ss_pred cccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 360 KLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 360 ~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
+|++|++++| .++.. .+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.++......+
T Consensus 150 ~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--- 218 (353)
T 2z80_A 150 KLQILRVGNMDTFTKI----QRKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLLEIFV--- 218 (353)
T ss_dssp TCCEEEEEESSSCCEE----CTTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHHHHHH---
T ss_pred CCcEEECCCCcccccc----CHHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccchhhhh---
Confidence 5555555555 23331 112344555666666666665543 23344555666666666666654432222
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKC 518 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 518 (600)
..+++|++|++++|.+++.....+.. ...+..++.++++++.+++.....+...+..+++|++|++++|.++......
T Consensus 219 -~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 219 -DVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp -HHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred -hhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH
Confidence 22366666666666665443322221 2345567777777777777666666666677777777777777776533221
Q ss_pred HHHHHhhcCccccEEEccCCCCChhH--HHHHHHHHHh
Q 007526 519 LAQSFKVVNEALTSIDLAFNEIRDDG--AFAIAQALKA 554 (600)
Q Consensus 519 l~~~l~~~n~~L~~L~ls~n~i~~~~--~~~l~~~~~~ 554 (600)
+... ++|++|++++|++.... ...+..+...
T Consensus 297 ~~~l-----~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 297 FDRL-----TSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp TTTC-----TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred HhcC-----CCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 2222 56777777777776543 3344444443
No 52
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.1e-21 Score=196.87 Aligned_cols=255 Identities=17% Similarity=0.219 Sum_probs=134.2
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 325 (600)
..++.++++++.+.+.. +...+. ++++.|++++|.+++... .+..+++|++|++++|.++..+ ++..
T Consensus 47 ~~~~~l~l~~~~~~~~~---~~~~~~--~~l~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~~~l~~~~---~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDV---TGRLLS--QGVIAFRCPRSFMDQPLA-----EHFSPFRVQHMDLSNSVIEVST---LHGI 113 (336)
T ss_dssp TTSSEEECTTCBCCHHH---HHHHHH--TTCSEEECTTCEECSCCC-----SCCCCBCCCEEECTTCEECHHH---HHHH
T ss_pred hhheeeccccccCCHHH---HHhhhh--ccceEEEcCCccccccch-----hhccCCCCCEEEccCCCcCHHH---HHHH
Confidence 34777777777776432 222222 567777777776653211 1234566666666666655432 2234
Q ss_pred hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCC-CCChHH
Q 007526 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEG 403 (600)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~ 403 (600)
+..+++|++|++++|.+++.....+ ...++|++|++++| .+++.+ ++..+..+++|++|++++| .+++.+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l-----~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHH-----TTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHH-----hcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 4556666666666666665433333 12346666666666 455432 3344556666666666666 666543
Q ss_pred HHHHHHHhhcCC-CccEEEccCC--CCChHHHHHHHHHhhcCCCcCEEECcCCC-CChhHHHHHHHHHhhCCCccEEecc
Q 007526 404 AEKIADALKQNR-TITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVLKFHGNINTLKLG 479 (600)
Q Consensus 404 ~~~l~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~l~ 479 (600)
+ ...+..++ +|++|++++| .+++.. +...+..+++|++|++++|. +++..... +..+++|++|+++
T Consensus 186 ~---~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----l~~l~~L~~L~l~ 255 (336)
T 2ast_B 186 V---QVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLS 255 (336)
T ss_dssp H---HHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGGG----GGGCTTCCEEECT
T ss_pred H---HHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHHH----HhCCCCCCEeeCC
Confidence 2 22333455 6666666666 444433 22333445666666666665 55443332 2344566666666
Q ss_pred Cc-CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526 480 WC-QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (600)
Q Consensus 480 ~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~ 543 (600)
+| .+++.+... +.++++|++|++++| +++.+...+... ++.|++++|++++.
T Consensus 256 ~~~~~~~~~~~~----l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 256 RCYDIIPETLLE----LGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTI 308 (336)
T ss_dssp TCTTCCGGGGGG----GGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCT
T ss_pred CCCCCCHHHHHH----HhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccc
Confidence 66 344433322 233466666666666 555444433322 44455566665543
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=3.2e-25 Score=224.44 Aligned_cols=275 Identities=19% Similarity=0.212 Sum_probs=129.4
Q ss_pred CccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHH
Q 007526 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (600)
Q Consensus 191 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l 270 (600)
+++.++++++.++. ++..+ .++|+.|++++|.++... ...+..+++|++|++++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~-----lp~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-----VPKDL--PPDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCS-----CCCSC--CTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCccc-----cCccC--CCCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 56666666665542 11111 145666666666655431 112334555666666666555421 2223
Q ss_pred hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH
Q 007526 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (600)
Q Consensus 271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 350 (600)
..+++|++|++++|.++.. +.. ..++|++|++++|.++.... ..+..+++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-----~~~--~~~~L~~L~l~~n~l~~~~~----~~~~~l~~------------------- 146 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-----PEK--MPKTLQELRVHENEITKVRK----SVFNGLNQ------------------- 146 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-----CSS--CCTTCCEEECCSSCCCBBCH----HHHTTCTT-------------------
T ss_pred cCCCCCCEEECCCCcCCcc-----Chh--hcccccEEECCCCcccccCH----hHhcCCcc-------------------
Confidence 3445555555555555321 111 01345555555554443322 12234444
Q ss_pred HHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChH
Q 007526 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (600)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (600)
|+.|++++|.+...+. .+..+..+++|++|++++|.++. ++..+ .++|++|++++|.++..
T Consensus 147 ----------L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 147 ----------MIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKV 207 (330)
T ss_dssp ----------CCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEE
T ss_pred ----------ccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCcc
Confidence 4555555444432111 11234455555555555555543 11111 24566666666655543
Q ss_pred HHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCC
Q 007526 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (600)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 510 (600)
.. ..+..+++|++|++++|.+++.... .+..+++|++|++++|.++.. ...+..+++|++|++++|.
T Consensus 208 ~~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 208 DA----ASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLVKV-----PGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CT----GGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCSSC-----CTTTTTCSSCCEEECCSSC
T ss_pred CH----HHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCccC-----ChhhccCCCcCEEECCCCc
Confidence 21 2334446666666666665543221 224455666666666666532 1223445666666666666
Q ss_pred CChHHHHHHHHHH-hhcCccccEEEccCCCCCh
Q 007526 511 LRDEGAKCLAQSF-KVVNEALTSIDLAFNEIRD 542 (600)
Q Consensus 511 i~~~~~~~l~~~l-~~~n~~L~~L~ls~n~i~~ 542 (600)
|++.+...+.... ......++.|++++|.+..
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCccChhhcCCcccccccccccceEeecCcccc
Confidence 6654433332110 0011456677777776653
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=2.6e-24 Score=226.73 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=49.5
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC-CCccEEeccCcCCChhHHHHHHH
Q 007526 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGWCQIGASGAEFVAD 493 (600)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~ 493 (600)
++|++|++++|.++... .. .++|++|++++|.++.. ... ++|++|++++|++++...
T Consensus 277 ~~L~~L~ls~N~l~~l~-----~~---~~~L~~L~l~~N~l~~i---------~~~~~~L~~L~Ls~N~l~~lp~----- 334 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLS-----EL---PPNLYYLNASSNEIRSL---------CDLPPSLEELNVSNNKLIELPA----- 334 (454)
T ss_dssp TTCCEEECCSSCCSEES-----CC---CTTCCEEECCSSCCSEE---------CCCCTTCCEEECCSSCCSCCCC-----
T ss_pred CcCCEEECcCCccCccc-----Cc---CCcCCEEECcCCcCCcc---------cCCcCcCCEEECCCCccccccc-----
Confidence 45555555555554411 00 14556666666555431 111 366666666666654321
Q ss_pred HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526 494 MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (600)
Q Consensus 494 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~ 542 (600)
.+++|++|++++|.++.... . .++|++|++++|++++
T Consensus 335 ---~~~~L~~L~L~~N~l~~lp~-----~----l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 335 ---LPPRLERLIASFNHLAEVPE-----L----PQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC-----C----CTTCCEEECCSSCCSS
T ss_pred ---cCCcCCEEECCCCccccccc-----h----hhhccEEECCCCCCCc
Confidence 13667777777776664221 1 1567777777776665
No 55
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7.5e-21 Score=192.75 Aligned_cols=233 Identities=15% Similarity=0.186 Sum_probs=135.2
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 325 (600)
++++.|++++|.++..... +..+++|++|++++|.+++. .++..+..+++|++|++++|.+++... ..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~----~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIV----NT 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHH----HH
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHH----HH
Confidence 4555555555544432111 22345666666666666532 234445556666666666666654433 33
Q ss_pred hhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCC-CCcEEEccCC--CCC
Q 007526 326 LEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCK-SLLWINLYMN--DIG 400 (600)
Q Consensus 326 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n--~l~ 400 (600)
+..+++|++|++++| .+++.++..+...+ ++|++|++++| .+++.+ ++..+..++ +|++|++++| .++
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~----~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSC----SRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHC----TTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcC----CCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCC
Confidence 445667777777776 56655554443332 36777777777 666543 344456677 7777777777 566
Q ss_pred hHHHHHHHHHhhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEec
Q 007526 401 DEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKL 478 (600)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l 478 (600)
+.+ ++..+..+++|++|++++|. +++.... .+..+++|++|++++| .+++.+.. .+..+++|++|++
T Consensus 211 ~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l 279 (336)
T 2ast_B 211 KSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLL----ELGEIPTLKTLQV 279 (336)
T ss_dssp HHH---HHHHHHHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGG----GGGGCTTCCEEEC
T ss_pred HHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHHH----HHhcCCCCCEEec
Confidence 543 33344456777777777777 5554333 3445577777777777 45554432 2345677888888
Q ss_pred cCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG 515 (600)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 515 (600)
++| +++.....+... ++.|++++|.+++..
T Consensus 280 ~~~-i~~~~~~~l~~~------l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 280 FGI-VPDGTLQLLKEA------LPHLQINCSHFTTIA 309 (336)
T ss_dssp TTS-SCTTCHHHHHHH------STTSEESCCCSCCTT
T ss_pred cCc-cCHHHHHHHHhh------CcceEEecccCcccc
Confidence 777 666555544432 444557777777643
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=3.5e-23 Score=211.52 Aligned_cols=286 Identities=16% Similarity=0.136 Sum_probs=147.7
Q ss_pred CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (600)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (600)
++.....+++++.++. ++..+ .++|++|++++|.++.... ..+..+++|++|++++|.++.. ...
T Consensus 30 C~~~~~c~~~~~~l~~-----iP~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~ 94 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-----IPSGL--TEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTI----EED 94 (353)
T ss_dssp ECTTSEEECCSTTCSS-----CCTTC--CTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEE----CTT
T ss_pred CCCCeEeeCCCCCccc-----ccccc--cccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCcc----CHh
Confidence 4555556666666654 22211 2466666666666553211 1234455666666666655542 112
Q ss_pred HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHH
Q 007526 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (600)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 320 (600)
.+..+++|++|++++|+++.... ..+..+++|++|++++|.++ ..+..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~----------------------------~l~~~ 142 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYK----------------------------TLGET 142 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCH----HHHTTCTTCSEEECTTCCCS----------------------------SSCSS
T ss_pred hcCCCCCCCEEECCCCcCCcCCH----hHhCCCccCCEEECCCCCCc----------------------------ccCch
Confidence 23344555555555555544211 12333455555555555543 21110
Q ss_pred HHHHHhhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526 321 ALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (600)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (600)
..+..+++|++|++++| .++......+ ...++|++|++++|.++.. .+..+..+++|++|++++|.+
T Consensus 143 ---~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 143 ---SLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp ---CSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCS
T ss_pred ---hhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCcc
Confidence 01334455555555555 2332111111 1233566666666655542 233455566666666666666
Q ss_pred ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (600)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 479 (600)
+.... ..+..+++|++|++++|.++......+.. ...+..++.++++++.+++.+...+...+..+++|++|+++
T Consensus 211 ~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 211 ILLLE----IFVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp TTHHH----HHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred ccchh----hhhhhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 54211 11223566666666666665432222211 22346677777777777777777777777777778888888
Q ss_pred CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
+|+++..... .+..+++|++|++++|.++..
T Consensus 286 ~N~l~~i~~~----~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 286 RNQLKSVPDG----IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp SSCCCCCCTT----TTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCccCHH----HHhcCCCCCEEEeeCCCccCc
Confidence 7777654332 234557888888888877754
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=8.8e-25 Score=221.37 Aligned_cols=245 Identities=18% Similarity=0.166 Sum_probs=112.1
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007526 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (600)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 242 (600)
+++.++++++.+.. ++..+ .+++++|++++|.++.... ..+..+++|++|++++|.++.. .+..+
T Consensus 34 ~l~~l~~~~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-----VPKEI--SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSS-----CCSCC--CTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCccc-----cCCCC--CCCCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 35666776666543 12111 2466666666666553211 2234556666666666666543 12334
Q ss_pred hhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (600)
Q Consensus 243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 322 (600)
..+++|++|++++|+++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|.++..+..
T Consensus 99 ~~l~~L~~L~L~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~-- 165 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEI-----PPNL--PSSLVELRIHDNRIRKVP----KGVFSGLRNMNCIEMGGNPLENSGFE-- 165 (332)
T ss_dssp TTCTTCCEEECCSSCCCSC-----CSSC--CTTCCEEECCSSCCCCCC----SGGGSSCSSCCEEECCSCCCBGGGSC--
T ss_pred hCcCCCCEEECCCCcCCcc-----Cccc--cccCCEEECCCCccCccC----HhHhCCCccCCEEECCCCccccCCCC--
Confidence 4456666666666665531 1111 145666666666554211 11233455555555555555432110
Q ss_pred HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH
Q 007526 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (600)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (600)
+..+..+ +|++|++++|.++.. ...+ .++|++|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l-----~~~~---~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGI-----PKDL---PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSC-----CSSS---CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred cccccCC-ccCEEECcCCCCCcc-----Cccc---cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence 1122223 555555555554431 1111 12455555555555442 112234444555555555544432
Q ss_pred HHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
....+..+++|++|++++|.++. ++..+..+++|++|++++|+|+.
T Consensus 233 ----~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 233 ----ENGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp ----CTTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCB
T ss_pred ----ChhHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCc
Confidence 11123334445555555544442 22223334444444444444443
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.7e-25 Score=225.15 Aligned_cols=272 Identities=16% Similarity=0.138 Sum_probs=153.2
Q ss_pred CccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHH
Q 007526 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (600)
Q Consensus 191 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l 270 (600)
+++.++++++.++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|+++... +..+
T Consensus 34 ~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELR----KDDFKGLQHLYALVLVNNKISKIH----EKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----GGGS
T ss_pred cCCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccC----HhHhhCCCCCcEEECCCCccCccC----HhHh
Confidence 678888888876522 2111 257888888888877541 234556688888888888877642 2334
Q ss_pred hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH
Q 007526 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (600)
Q Consensus 271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 350 (600)
..+++|++|++++|.++. ++..+ .++|++|++++|.++..+. ..+..+++|++|++++|.++..+..
T Consensus 99 ~~l~~L~~L~L~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-- 165 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVE-----IPPNL--PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNPLENSGFE-- 165 (332)
T ss_dssp TTCTTCCEEECCSSCCCS-----CCSSC--CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCCCBGGGSC--
T ss_pred hCcCCCCEEECCCCcCCc-----cCccc--cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCCccccCCCC--
Confidence 556788888888887753 22211 2678888888877765432 2355677777888877777542111
Q ss_pred HHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChH
Q 007526 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (600)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (600)
...+ ... +|+.|++++|.++. ++..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++..
T Consensus 166 ~~~~-~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 166 PGAF-DGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp TTSS-CSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred cccc-cCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence 1111 122 57777777776665 22211 25666777777666553 122344556666666666666553
Q ss_pred HHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHH--hhCCCccEEEccC
Q 007526 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML--RYNNTISILDLRA 508 (600)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~ 508 (600)
.. ..+..+++|++|++++|.++.. ...+..+++|++|++++|.|+..+...+.... ...+.|+.|++++
T Consensus 233 ~~----~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 233 EN----GSLSFLPTLRELHLDNNKLSRV-----PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CT----TGGGGCTTCCEEECCSSCCCBC-----CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred Ch----hHhhCCCCCCEEECCCCcCeec-----ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 21 2234446666666666655522 12234455566666666655554433322210 0123455555555
Q ss_pred CCCC
Q 007526 509 NGLR 512 (600)
Q Consensus 509 n~i~ 512 (600)
|.+.
T Consensus 304 N~~~ 307 (332)
T 2ft3_A 304 NPVP 307 (332)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 5444
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=3e-23 Score=218.56 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=113.1
Q ss_pred CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (600)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (600)
++|++|++++|.+++ ++ .+..+++|++|++++|.++..+. ...+|++|++++|.+++.. .
T Consensus 131 ~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~lp~--------~~~~L~~L~L~~n~l~~l~------~ 190 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAGNNQLEELP------E 190 (454)
T ss_dssp TTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSSCC------C
T ss_pred CCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCcccCC--------CcccccEEECcCCcCCcCc------c
Confidence 345555555555542 12 24445555555555555443211 1235555555555554311 1
Q ss_pred hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (600)
Q Consensus 354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (600)
+ ...++|++|++++|.++. ++. ..++|++|++++|.+.. ++ .+..+++|++|++++|+++..
T Consensus 191 ~-~~l~~L~~L~l~~N~l~~-----l~~---~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~l--- 252 (454)
T 1jl5_A 191 L-QNLPFLTAIYADNNSLKK-----LPD---LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKTL--- 252 (454)
T ss_dssp C-TTCTTCCEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSSC---
T ss_pred c-cCCCCCCEEECCCCcCCc-----CCC---CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCcc---
Confidence 1 223355555555555543 111 12355666666665553 22 244556666666666665541
Q ss_pred HHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
+. ..++|++|++++|.++... ...++|++|++++|.+++... -.++|++|++++|.+++
T Consensus 253 --~~---~~~~L~~L~l~~N~l~~l~--------~~~~~L~~L~ls~N~l~~l~~--------~~~~L~~L~l~~N~l~~ 311 (454)
T 1jl5_A 253 --PD---LPPSLEALNVRDNYLTDLP--------ELPQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRS 311 (454)
T ss_dssp --CS---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSEESC--------CCTTCCEEECCSSCCSE
T ss_pred --cc---cccccCEEECCCCcccccC--------cccCcCCEEECcCCccCcccC--------cCCcCCEEECcCCcCCc
Confidence 11 1255666666666655321 112466777777776655311 01567777777777665
Q ss_pred HHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526 514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (600)
Q Consensus 514 ~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~ 573 (600)
.. . ..++|++|++++|++++.... + + .|++|++++|.++..
T Consensus 312 i~-----~----~~~~L~~L~Ls~N~l~~lp~~-----~---~--~L~~L~L~~N~l~~l 352 (454)
T 1jl5_A 312 LC-----D----LPPSLEELNVSNNKLIELPAL-----P---P--RLERLIASFNHLAEV 352 (454)
T ss_dssp EC-----C----CCTTCCEEECCSSCCSCCCCC-----C---T--TCCEEECCSSCCSCC
T ss_pred cc-----C----CcCcCCEEECCCCcccccccc-----C---C--cCCEEECCCCccccc
Confidence 21 1 114688888888877752211 1 1 367777777766643
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=4e-21 Score=208.68 Aligned_cols=268 Identities=17% Similarity=0.144 Sum_probs=186.2
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (600)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (600)
.++++|+++++.++. ++..+ .++|++|++++|.++. ++. .+++|++|+|++|+++.. +.
T Consensus 40 ~~l~~L~ls~n~L~~-----lp~~l--~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-----LPDCL--PAHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSC-----CCSCC--CTTCSEEEECSCCCSC-----CCC---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCc-----cChhh--CCCCcEEEecCCCCCC-----CCC---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 458899999998875 33323 2789999999998763 221 357899999999988752 22
Q ss_pred HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (600)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 321 (600)
.+++|++|++++|+++.. +. ..++|++|++++|.++. ++. .+++|++|++++|.++..+.
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l~~-- 158 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA-- 158 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCc-----CCC---CCCCCCEEECcCCcCCCcCC--
Confidence 458899999999888763 22 35788889998888854 221 24788888888888765321
Q ss_pred HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (600)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (600)
..++|+.|++++|.++... ...++|+.|++++|.++. ++ ...++|+.|++++|.++.
T Consensus 159 ------~~~~L~~L~L~~N~l~~l~---------~~~~~L~~L~Ls~N~l~~-----l~---~~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 159 ------LPSELCKLWAYNNQLTSLP---------MLPSGLQELSVSDNQLAS-----LP---TLPSELYKLWAYNNRLTS 215 (622)
T ss_dssp ------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSS
T ss_pred ------ccCCCCEEECCCCCCCCCc---------ccCCCCcEEECCCCCCCC-----CC---CccchhhEEECcCCcccc
Confidence 3467888888888877622 233478888888888776 33 134678888888887775
Q ss_pred HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (600)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 481 (600)
++. ..++|++|++++|.++... ..+++|++|+|++|.|+.... .+++|++|++++|
T Consensus 216 -----l~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 -----LPA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp -----CCC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred -----cCC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 221 2467888888888877622 234778888888887764321 4567888888888
Q ss_pred CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (600)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 522 (600)
.|+..+ ..+..+++|+.|+|++|.+++..+..+...
T Consensus 272 ~L~~lp-----~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 272 QLTRLP-----ESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCCSCC-----GGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcCC-----HHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 877442 235566888888888888887777766654
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=4e-21 Score=208.68 Aligned_cols=285 Identities=15% Similarity=0.111 Sum_probs=209.3
Q ss_pred CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHH
Q 007526 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (600)
Q Consensus 190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (600)
.+++.|++++|.++. ++..+. ++|++|++++|.++.. +. .+++|++|+|++|+++.. +.
T Consensus 40 ~~l~~L~ls~n~L~~-----lp~~l~--~~L~~L~L~~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSC-----CCSCCC--TTCSEEEECSCCCSCC-----CC---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCc-----cChhhC--CCCcEEEecCCCCCCC-----CC---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 468999999998763 222222 6899999999988752 22 458899999999998762 22
Q ss_pred HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHH
Q 007526 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (600)
Q Consensus 270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 349 (600)
.+++|++|++++|.++.- +. .+++|+.|++++|.++..+. .+++|++|++++|.++...
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~~l~--- 157 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASLP--- 157 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCC---
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCcCCC--------CCCCCCEEECcCCcCCCcC---
Confidence 468899999999988642 22 46889999999998876432 3578999999999887521
Q ss_pred HHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (600)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (600)
...++|+.|++++|.++. ++ ..+++|++|++++|.+++ ++. ..++|+.|++++|.++.
T Consensus 158 ------~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 158 ------ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred ------CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence 123479999999999887 44 457889999999998876 222 24789999999999876
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC
Q 007526 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (600)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 509 (600)
.. . ..++|++|++++|.|+... ..+++|++|++++|.|+..+. .+++|+.|+|++|
T Consensus 216 l~-----~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 LP-----A---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp CC-----C---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred cC-----C---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 32 1 2378999999999887642 346789999999999886543 3588999999999
Q ss_pred CCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCc-ccceeEEEccCC
Q 007526 510 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE-DVAVTSLNLANN 568 (600)
Q Consensus 510 ~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~-~~~L~~L~l~~n 568 (600)
.|+.. +..+... ++|+.|+|++|++++..+..+..+..... .-.+..++++++
T Consensus 272 ~L~~l-p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~ 325 (622)
T 3g06_A 272 QLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325 (622)
T ss_dssp CCCSC-CGGGGGS-----CTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC
T ss_pred CCCcC-CHHHhhc-----cccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCC
Confidence 98854 2223332 78999999999999888888777655321 112445555553
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=2.1e-23 Score=209.14 Aligned_cols=87 Identities=13% Similarity=0.206 Sum_probs=37.9
Q ss_pred CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccC-CCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (600)
Q Consensus 190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (600)
.++++|+|++|.++.. ..++..+..+++|++|++++ |.+... ++..+..+++|++|++++|.++.. ++.
T Consensus 50 ~~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGA----IPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEE----CCG
T ss_pred ceEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCc----CCH
Confidence 3556666666555410 01222344455555555553 444322 223334445555555555544421 122
Q ss_pred HHhcCCCccEEeecCCCC
Q 007526 269 LLKNNSILRVLELNNNMI 286 (600)
Q Consensus 269 ~l~~~~~L~~L~L~~n~i 286 (600)
.+..+++|++|++++|.+
T Consensus 120 ~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp GGGGCTTCCEEECCSSEE
T ss_pred HHhCCCCCCEEeCCCCcc
Confidence 233334444444444444
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=7.2e-24 Score=212.53 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=116.6
Q ss_pred CCcCEEEeecCCCCh--HHHHHHHHHHhcCCCccEEeecC-CCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 246 AGVERLQLSSVDLRD--EGAKAIAELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 322 (600)
.++++|++++|.++. . ++..+.++++|++|++++ |.+++ .++..+..+++|++|++++|.++...
T Consensus 50 ~~l~~L~L~~~~l~~~~~----~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~---- 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP----IPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAI---- 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEE----CCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEEC----
T ss_pred ceEEEEECCCCCccCCcc----cChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcC----
Confidence 567888888887764 2 234455667788888874 66642 23444556677777777777665211
Q ss_pred HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCC-CCcEEEccCCCCCh
Q 007526 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGD 401 (600)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~ 401 (600)
+..+..+++|++|++++|.+++.. ...+ ...++|++|++++|.++.. ++..+..++ +|++|++++|.++.
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTL----PPSI-SSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCC----CGGG-GGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CHHHhCCCCCCEEeCCCCccCCcC----ChHH-hcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeec
Confidence 133456666777777666654321 1111 1233566666666665532 344445554 56666666665543
Q ss_pred HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (600)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 481 (600)
. ++..+..++ |++|++++|.++.. ++..+..+++|++|++++|.++..... +..+++|++|++++|
T Consensus 189 ~----~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 189 K----IPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNN 254 (313)
T ss_dssp E----CCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSS
T ss_pred c----CChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCC
Confidence 2 223333333 55666665555432 222333445555555555554422110 233445555555555
Q ss_pred CCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 482 QIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
.+++..+. .+..+++|++|++++|.++
T Consensus 255 ~l~~~~p~----~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 255 RIYGTLPQ----GLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCEECCCG----GGGGCTTCCEEECCSSEEE
T ss_pred cccCcCCh----HHhcCcCCCEEECcCCccc
Confidence 54433221 1223344555555554444
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.1e-22 Score=200.22 Aligned_cols=172 Identities=23% Similarity=0.259 Sum_probs=86.6
Q ss_pred hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (600)
Q Consensus 300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l 379 (600)
.+++|++|++++|.++.. ...++|++|++++|.+++... ...++|++|++++|.++.. .
T Consensus 78 ~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~----~ 136 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----R 136 (317)
T ss_dssp TCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSG----G
T ss_pred hcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCc----c
Confidence 344555555555544321 123455555555555544211 1123566666666665552 1
Q ss_pred HHHHHhCCCCcEEEccCCCCChHHHHHHHHHh-hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (600)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (600)
+..+..+++|++|++++|.+++.. +..+ ..+++|++|++++|.++... ....+++|++|++++|.|+..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEE
T ss_pred chhhhccCCCCEEECCCCCCCccc----HHHHhhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCcc
Confidence 223445556666666666665431 1112 23456666666666665431 111246666666666666543
Q ss_pred HHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
.. .+..+++|++|++++|.++... ..+..+++|+.|++++|.++
T Consensus 207 ~~-----~~~~l~~L~~L~L~~N~l~~l~-----~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 207 GP-----EFQSAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CG-----GGGGGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECTTCCCB
T ss_pred hh-----hhcccCcccEEECcCCcccchh-----hHhhcCCCCCEEEccCCCcc
Confidence 21 1344556666666666665432 22344566666666666666
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=5.1e-22 Score=199.56 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=26.8
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (600)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 484 (600)
+++|++|++++|.++... ..+..+++|++|++++|.|+.. ...+..+++|++|++++|.+.
T Consensus 190 l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMG-----PEFQSAAGVTWISLRNNKLVLI-----EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCEEC-----GGGGGGTTCSEEECTTSCCCEE-----CTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCCcch-----hhhcccCcccEEECcCCcccch-----hhHhhcCCCCCEEEccCCCcc
Confidence 344555555555444321 1123335555555555544421 112233445555555555554
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=8.8e-23 Score=225.33 Aligned_cols=383 Identities=16% Similarity=0.124 Sum_probs=232.6
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (600)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (600)
+++++|||++|.|+... ...|..+++|++|+|++|.|+.... +++..+++|++|+|++|+++... ...
T Consensus 52 ~~~~~LdLs~N~i~~l~----~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~~L~~L~Ls~N~l~~l~----~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLA----LGA 119 (635)
T ss_dssp TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEEC----GGG
T ss_pred cCCCEEEeeCCCCCCCC----HHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCCCCCEEEccCCcCCCCC----HHH
Confidence 47999999999998632 3457889999999999999874322 34567899999999999998642 234
Q ss_pred HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (600)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 321 (600)
+..+++|++|++++|+++.... ..+.++++|++|++++|.++.. .++..+..++.|++|++++|.++......
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred hcCCCCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccC---CCchhhccchhhhhhcccCcccccccccc
Confidence 5678999999999999887422 2356679999999999998642 23445667899999999999987654433
Q ss_pred HHHHhhcCC-CCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCC------------
Q 007526 322 LAKGLEGNK-SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS------------ 388 (600)
Q Consensus 322 l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~------------ 388 (600)
+. .+...+ ....++++.|.++..... .. ....+..+++.+|...... ....+..+..
T Consensus 193 l~-~L~~l~~~~~~~~ls~n~l~~i~~~-----~~-~~~~~~~l~l~~n~~~~~~---~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 193 LR-VLHQMPLLNLSLDLSLNPMNFIQPG-----AF-KEIRLHKLTLRNNFDSLNV---MKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp GH-HHHTCTTCCCEEECTTCCCCEECTT-----TT-TTCEEEEEEEESCCSSHHH---HHHHHHTTTTCEEEEEEEECCT
T ss_pred cc-chhhhhhhhhhhhcccCcccccCcc-----cc-cchhhhhhhhhcccccccc---cchhhcCCcccccccccccccc
Confidence 32 233333 456899999988753211 11 1225778899888665432 1222233222
Q ss_pred -------------------------------------------------------------------CcEEEccCCCCCh
Q 007526 389 -------------------------------------------------------------------LLWINLYMNDIGD 401 (600)
Q Consensus 389 -------------------------------------------------------------------L~~L~Ls~n~l~~ 401 (600)
++.|++.+|.+..
T Consensus 263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 342 (635)
T 4g8a_A 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 342 (635)
T ss_dssp TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS
T ss_pred cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC
Confidence 2333333322111
Q ss_pred HHHHHH---------------HHHhhcCCCccEEEccCCCCChHHHH--HHH----------------------------
Q 007526 402 EGAEKI---------------ADALKQNRTITTIDLGGNNIHSKGAS--AIA---------------------------- 436 (600)
Q Consensus 402 ~~~~~l---------------~~~l~~~~~L~~L~L~~n~l~~~~~~--~l~---------------------------- 436 (600)
.....+ ......+++|+.|++++|.+...+.. .+.
T Consensus 343 ~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L 422 (635)
T 4g8a_A 343 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQL 422 (635)
T ss_dssp CCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTC
T ss_pred cCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccc
Confidence 000000 00001234555555555554321100 000
Q ss_pred ----------------HHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCC
Q 007526 437 ----------------RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500 (600)
Q Consensus 437 ----------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~ 500 (600)
..+..+++++.+++++|.+.... ...+...+.|++|++++|.+.... ....+..+++
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~ 495 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRN 495 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTT
T ss_pred cchhhhhcccccccccccccccccccccccccccccccc----ccccccchhhhhhhhhhccccccc---Cchhhhhccc
Confidence 00111223333333333332211 112234567777777777532211 1123556699
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHH
Q 007526 501 ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLF 580 (600)
Q Consensus 501 L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 580 (600)
|++|+|++|+|+...+..+... ++|++|+|++|+|++..+..+..+. +|++|||++|+++......+..
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l-----~~L~~L~Ls~N~l~~l~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSL-----SSLQVLNMSHNNFFSLDTFPYKCLN------SLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTC-----TTCCEEECTTSCCCBCCCGGGTTCT------TCCEEECTTSCCCBCCSSCTTC
T ss_pred cCEEECCCCccCCcChHHHcCC-----CCCCEEECCCCcCCCCChhHHhCCC------CCCEEECCCCcCCCCCHHHHHh
Confidence 9999999999998765555544 7899999999999976655554333 3999999999998876654422
Q ss_pred HHHHHHHhhhhhHh
Q 007526 581 FSFLLHQIKSLFHS 594 (600)
Q Consensus 581 ~~~l~~~l~~l~~~ 594 (600)
+...++.|+++
T Consensus 565 ---l~~~L~~L~L~ 575 (635)
T 4g8a_A 565 ---FPSSLAFLNLT 575 (635)
T ss_dssp ---CCTTCCEEECT
T ss_pred ---hhCcCCEEEee
Confidence 22345555553
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.1e-22 Score=203.56 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=141.9
Q ss_pred cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (600)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 327 (600)
-+.++.+++.++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|.++..+.. +..+.
T Consensus 9 ~~~l~c~~~~l~~i-----p~~~--~~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~ 75 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-----PTGI--PSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLSFKGCC--SQSDF 75 (306)
T ss_dssp TTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCEEEEE--EHHHH
T ss_pred CCEEEcCCCCcccC-----CCCC--CCCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccCcccCc--ccccc
Confidence 35677777766652 2111 256888888888775321 12245677777777777777643200 01223
Q ss_pred cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHH
Q 007526 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (600)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (600)
.+++|++|++++|.+... ...+ ...++|++|++++|.++.... ...+..+++|++|++++|.+... .
T Consensus 76 ~~~~L~~L~Ls~n~i~~l-----~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~ 142 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITM-----SSNF-LGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----F 142 (306)
T ss_dssp SCSCCCEEECCSCSEEEE-----EEEE-ETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----S
T ss_pred cccccCEEECCCCccccC-----hhhc-CCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----c
Confidence 567777777777776531 1111 234467777777776655210 02355667777777777766543 2
Q ss_pred HHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhH
Q 007526 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (600)
Q Consensus 408 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 487 (600)
...+..+++|++|++++|.+++.. ++..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCSBCC
T ss_pred hhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCccCccC
Confidence 334555667777777777665410 22334455677777777776655422 22344566777777777666543
Q ss_pred HHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
... +..+++|++|++++|.+++..+..+... .++|++|++++|+++
T Consensus 216 ~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 216 TFP----YKCLNSLQVLDYSLNHIMTSKKQELQHF----PSSLAFLNLTQNDFA 261 (306)
T ss_dssp SGG----GTTCTTCCEEECTTSCCCBCSSSSCCCC----CTTCCEEECTTCCEE
T ss_pred hhh----ccCcccCCEeECCCCCCcccCHHHHHhh----hccCCEEEccCCCee
Confidence 322 3344667777777776665433322221 135666666666665
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=6.8e-22 Score=198.15 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=53.2
Q ss_pred cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHH
Q 007526 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (600)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (600)
.+++|++|++++|.+++. ...+........++|++|++++|.++.. .+..+..+++|++|++++|++.+.. .+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~--~~ 191 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQVRVFPALSTLDLSDNPELGER--GL 191 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC----CTTTCCCCSSCCEEECCSCTTCHHH--HH
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc----hHHHhccCCCCCEEECCCCCcCcch--HH
Confidence 445555555555555443 1111110000113555555555555542 1133445555666666655544321 11
Q ss_pred HHHh--hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 408 ADAL--KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 408 ~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
+..+ ..+++|++|++++|.++..+. .....+..+++|++|++++|.+++
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCc
Confidence 2222 345555555555555553211 011222334555555555555544
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.4e-20 Score=188.34 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=17.9
Q ss_pred CCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (600)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 485 (600)
++|++|+|++|+|+... .+..+++|++|++++|.+++
T Consensus 272 ~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAP------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCSCC------CTTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCCCc------hhhhCCCccEEECcCCCCCC
Confidence 45555555555554321 02334555555555555543
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.8e-21 Score=193.15 Aligned_cols=233 Identities=13% Similarity=0.136 Sum_probs=110.6
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH
Q 007526 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (600)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 297 (600)
+++++|+|++|.++. ++..+..+++|++|+|++|.++. ++..+..+++|++|++++|.++ .++..
T Consensus 81 ~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~-----~lp~~ 145 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLR-----ALPAS 145 (328)
T ss_dssp TTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCC-----CCCGG
T ss_pred cceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCccc-----cCcHH
Confidence 567777777776653 33444455666666666666653 2233344466666666666553 22333
Q ss_pred HhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHH
Q 007526 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (600)
Q Consensus 298 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~ 377 (600)
+..+++|++|++++|.+.... + ..+....+.+. + ...++|++|++++|.++.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~----p------~~~~~~~~~~~-------------~-~~l~~L~~L~L~~n~l~~---- 197 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTEL----P------EPLASTDASGE-------------H-QGLVNLQSLRLEWTGIRS---- 197 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCC----C------SCSEEEC-CCC-------------E-EESTTCCEEEEEEECCCC----
T ss_pred HhcCcCCCEEECCCCCCcccc----C------hhHhhccchhh-------------h-ccCCCCCEEECcCCCcCc----
Confidence 444555555555554321100 0 00111100000 0 112355566666655553
Q ss_pred HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+... ++..+..+++|++|+|++|.+..
T Consensus 198 -lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 198 -LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp -CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCC
T ss_pred -chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchh
Confidence 44445556666666666665554 233344555666666666554432 22233444555555555554432
Q ss_pred hHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (600)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 511 (600)
. +...+..+++|++|++++|.+.+.-+. .+.++++|+.+++..+.+
T Consensus 268 ~----~p~~~~~l~~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 268 T----LPLDIHRLTQLEKLDLRGCVNLSRLPS----LIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp B----CCTTGGGCTTCCEEECTTCTTCCCCCG----GGGGSCTTCEEECCGGGS
T ss_pred h----cchhhhcCCCCCEEeCCCCCchhhccH----HHhhccCceEEeCCHHHH
Confidence 2 111234445555555555544443222 233335555555554433
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1e-20 Score=189.50 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=50.5
Q ss_pred cccEEECcCCCCChhhHHHHH-HHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 360 KLAVLDIGNNSISAKGAFHVA-EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
+|++|++++|.++..+ .++ ..+..+++|++|++++|.+++... ...+..+++|++|++++|.++. ++..
T Consensus 202 ~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~l~~-----ip~~ 271 (312)
T 1wwl_A 202 TLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGLKQ-----VPKG 271 (312)
T ss_dssp TCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTCCEEECTTSCCSS-----CCSS
T ss_pred CCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccc---hhhhhhcCCCCEEECCCCccCh-----hhhh
Confidence 4555555555554211 011 223344555555555555544210 0112224556666666665552 2222
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 485 (600)
+. ++|++|++++|+|++.. . +..+++|++|++++|.+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~p-----~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRNP-----S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSCC-----C-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCCh-----h-HhhCCCCCEEeccCCCCCC
Confidence 22 45666666666655431 1 3445566666666666554
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.5e-21 Score=205.60 Aligned_cols=248 Identities=17% Similarity=0.126 Sum_probs=168.9
Q ss_pred CcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (600)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 326 (600)
....++.++..++. ++..+ .++++.|+|++|.++... ...+..+++|++|+|++|.++.... ..+
T Consensus 44 ~~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-----VPDGI--STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEI----GAF 108 (440)
T ss_dssp TSCEEECCSCCCSS-----CCSCC--CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECG----GGG
T ss_pred CCCEEEeCCCCcCc-----CCCCC--CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccCh----hhc
Confidence 45678888877765 22222 267899999999886432 2445678889999999998876543 346
Q ss_pred hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC-CCChHHHH
Q 007526 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE 405 (600)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 405 (600)
..+++|++|++++|.++..... .....++|++|++++|.++.. .+..+..+++|++|++++| .+...
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNG-----AFVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTT-----TSCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCeeCHh-----HhhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee---
Confidence 6788899999998888753211 113455888888888888763 2234667888888888875 44432
Q ss_pred HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (600)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 485 (600)
-...+..+++|++|++++|.++... .+..+++|++|+|++|.|+.... ..+..+++|++|++++|.++.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeE
Confidence 1124556788888888888887532 24556788888888888776432 234566788888888888877
Q ss_pred hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526 486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
..... +..+++|++|+|++|.|+......+... ++|++|+|++|.+.
T Consensus 246 ~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNA----FDNLQSLVEINLAHNNLTLLPHDLFTPL-----HHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTS----STTCTTCCEEECTTSCCCCCCTTTTSSC-----TTCCEEECCSSCEE
T ss_pred EChhh----hcCCCCCCEEECCCCCCCccChhHhccc-----cCCCEEEcCCCCcc
Confidence 65543 3445888888888888776544333322 67888888888764
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=1.3e-20 Score=190.04 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=96.3
Q ss_pred hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (600)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (600)
..+++++|+|++|.+.. ++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.++. ++
T Consensus 79 ~~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLRA-----LP 143 (328)
T ss_dssp TSTTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCCC-----CC
T ss_pred cccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCcccc-----Cc
Confidence 35788899999988874 45556667888888888888762 33445667888888888888773 45
Q ss_pred HHHhhCCCcCEEEeecCCCChHHHHHHHHHH---------hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEcc
Q 007526 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELL---------KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (600)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l---------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (600)
..+..+++|++|++++|++... ++..+ ..+++|++|++++|.++ .++..+..+++|++|+++
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTE----LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCC----CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-----CCCGGGGGCTTCCEEEEE
T ss_pred HHHhcCcCCCEEECCCCCCccc----cChhHhhccchhhhccCCCCCEEECcCCCcC-----cchHhhcCCCCCCEEEcc
Confidence 5667778888888888754432 11111 12456666666666653 223334455556666666
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007526 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (600)
Q Consensus 311 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 343 (600)
+|.++... ..+..+++|++|++++|.+.
T Consensus 215 ~N~l~~l~-----~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 215 NSPLSALG-----PAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp SSCCCCCC-----GGGGGCTTCCEEECTTCTTC
T ss_pred CCCCCcCc-----hhhccCCCCCEEECcCCcch
Confidence 55554321 23444555555555555443
No 74
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.77 E-value=1.6e-17 Score=152.43 Aligned_cols=137 Identities=24% Similarity=0.224 Sum_probs=82.8
Q ss_pred HHHHHHhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
+...+..+++|++|+|++| .+++.|+..+..++..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455555566666666666 666666666666665556666666666666666666666666655666666666666666
Q ss_pred hHHHHHHHHHhhCCCccEEec--cCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526 458 DGAKALSEVLKFHGNINTLKL--GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG 515 (600)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~l--~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 515 (600)
.+...++..+..+++|++|++ ++|.|++.+...+++.+..+++|++|+|++|.|++.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 666666666555556666666 5566666666666666666666666666666555544
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=6.9e-21 Score=200.46 Aligned_cols=248 Identities=16% Similarity=0.165 Sum_probs=189.1
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHH
Q 007526 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (600)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 298 (600)
..+.++.++..++. ++..+ .++++.|+|++|+++.... ..+.++++|++|+|++|.++... +..+
T Consensus 44 ~~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~----~~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-----VPDGI--STNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIE----IGAF 108 (440)
T ss_dssp TSCEEECCSCCCSS-----CCSCC--CTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEEC----GGGG
T ss_pred CCCEEEeCCCCcCc-----CCCCC--CCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccC----hhhc
Confidence 46789988887765 33322 2679999999999987533 33556799999999999997532 3456
Q ss_pred hhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHH
Q 007526 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAF 377 (600)
Q Consensus 299 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~ 377 (600)
..+++|++|+|++|.++.... ..+..+++|++|++++|.++......+ ...++|+.|++++| .+...
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCT----TTSCSCSSCCEEECCSCCCCEECTTTT-----TTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCeeCH----hHhhccccCceeeCCCCcccccCHHHh-----hhCcccCEeCCCCCCCccee---
Confidence 678999999999999886543 346688999999999999886422111 34568999999995 44442
Q ss_pred HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
-...+..+++|++|++++|.+++. + .+..+++|++|++++|.++.... ..+..+++|++|+|++|.|+.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeE
Confidence 112467899999999999998863 2 36678999999999999987533 446667999999999999987
Q ss_pred hHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
... ..+..+++|++|++++|+++...... +..+++|+.|+|++|.+.
T Consensus 246 ~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IER----NAFDNLQSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECT----TSSTTCTTCCEEECTTSCCCCCCTTT----TSSCTTCCEEECCSSCEE
T ss_pred ECh----hhhcCCCCCCEEECCCCCCCccChhH----hccccCCCEEEcCCCCcc
Confidence 643 23456789999999999998775543 445699999999999765
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=6.1e-21 Score=201.56 Aligned_cols=247 Identities=18% Similarity=0.125 Sum_probs=162.0
Q ss_pred cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (600)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 327 (600)
...++.++..++. ++..+ .++|++|+|++|.++... +..+..+++|++|++++|.++.... ..+.
T Consensus 56 ~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-----VPQGI--PSNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIEV----GAFN 120 (452)
T ss_dssp SCEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred CcEEEECCCCcCc-----cCCCC--CCCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcCh----hhcc
Confidence 4556666665554 22111 167899999999886432 3455678889999999988876543 3456
Q ss_pred cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC-CCChHHHHH
Q 007526 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 406 (600)
Q Consensus 328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 406 (600)
.+++|++|++++|.++.... ......++|++|++++|.++.. ....+..+++|++|++++| .+...
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i---- 187 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPS-----GAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYI---- 187 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCT-----TTSSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE----
T ss_pred CcccCCEEECCCCcCCccCh-----hhhcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCcccc----
Confidence 78889999999888875321 1113455788888888888763 2234667888888888874 44432
Q ss_pred HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (600)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 486 (600)
-...+..+++|++|++++|.++... .+..+++|++|+|++|.|+.... ..+..+++|++|++++|.++..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCCEE
T ss_pred ChhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCCcCceE
Confidence 1123556778888888888877531 24556788888888887765432 2345667788888888877766
Q ss_pred HHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
.... +..+++|++|+|++|.|+......+... ++|++|+|++|.+.
T Consensus 258 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNA----FDGLASLVELNLAHNNLSSLPHDLFTPL-----RYLVELHLHHNPWN 303 (452)
T ss_dssp CTTT----TTTCTTCCEEECCSSCCSCCCTTSSTTC-----TTCCEEECCSSCEE
T ss_pred CHHH----hcCCCCCCEEECCCCcCCccChHHhccc-----cCCCEEEccCCCcC
Confidence 5433 3445778888888887776443333222 66777777777664
No 77
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.2e-20 Score=184.65 Aligned_cols=226 Identities=17% Similarity=0.123 Sum_probs=162.5
Q ss_pred ccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhh
Q 007526 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS 355 (600)
Q Consensus 276 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 355 (600)
-++++.+++.++. ++. ...++|++|++++|.++.... ..+..+++|++|++++|.+++.....+
T Consensus 13 ~~~~~c~~~~l~~-----ip~--~~~~~l~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~----- 76 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-----VPV--GIPAASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDAAAF----- 76 (285)
T ss_dssp SCEEECCSSCCSS-----CCT--TCCTTCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTTTT-----
T ss_pred CeEEEcCcCCccc-----CCc--CCCCCceEEEeeCCcCCccCH----HHcccCCCCCEEECCCCccceeCHhhc-----
Confidence 3678888887753 222 124689999999998877553 345678899999999998876422222
Q ss_pred cCCCcccEEECcCCC-CChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHH
Q 007526 356 SRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (600)
Q Consensus 356 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (600)
...++|++|++++|. ++.. .+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.++....
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~-- 146 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSV----DPATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPD-- 146 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred CCccCCCEEeCCCCCCcccc----CHHHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccCH--
Confidence 244589999999986 6663 244567788999999999988763 23456678889999999998876432
Q ss_pred HHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
..+..+++|++|++++|.++..... .+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++.
T Consensus 147 --~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 147 --DTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp --TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCC
T ss_pred --hHhccCCCccEEECCCCcccccCHH----HhcCccccCEEECCCCcccccCHhH----ccCcccccEeeCCCCcCCcC
Confidence 2355568899999999988754322 2356778999999999888765443 34558899999999988876
Q ss_pred HHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526 515 GAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (600)
Q Consensus 515 ~~~~l~~~l~~~n~~L~~L~ls~n~i~~ 542 (600)
....+... ++|++|++++|++..
T Consensus 217 ~~~~~~~l-----~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 217 PTEALAPL-----RALQYLRLNDNPWVC 239 (285)
T ss_dssp CHHHHTTC-----TTCCEEECCSSCEEC
T ss_pred CHHHcccC-----cccCEEeccCCCccC
Confidence 65555443 778899999988763
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.1e-20 Score=197.54 Aligned_cols=247 Identities=17% Similarity=0.173 Sum_probs=184.9
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHh
Q 007526 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 299 (600)
Q Consensus 220 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 299 (600)
...++.++..++. ++..+ .+++++|+|++|+++.... ..+.++++|++|+|++|.++... +..+.
T Consensus 56 ~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-----VPQGI--PSNTRYLNLMENNIQMIQA----DTFRHLHHLEVLQLGRNSIRQIE----VGAFN 120 (452)
T ss_dssp SCEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEEC----TTTTT
T ss_pred CcEEEECCCCcCc-----cCCCC--CCCccEEECcCCcCceECH----HHcCCCCCCCEEECCCCccCCcC----hhhcc
Confidence 4566666666543 22211 2689999999999987533 34556799999999999997532 34566
Q ss_pred hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHH
Q 007526 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFH 378 (600)
Q Consensus 300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~ 378 (600)
.+++|++|+|++|.++.... ..+..+++|++|++++|.++..... .....++|+.|++++| .+...
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~~~~l~~i---- 187 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPS----GAFEYLSKLRELWLRNNPIESIPSY-----AFNRVPSLMRLDLGELKKLEYI---- 187 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCT----TTSSSCTTCCEEECCSCCCCEECTT-----TTTTCTTCCEEECCCCTTCCEE----
T ss_pred CcccCCEEECCCCcCCccCh----hhhcccCCCCEEECCCCCcceeCHh-----HHhcCCcccEEeCCCCCCcccc----
Confidence 78999999999999886543 3466789999999999998863221 1135568999999985 44442
Q ss_pred HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (600)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (600)
-...+..+++|++|++++|.+++. + .+..+++|++|++++|.++... +..+..+++|++|+|++|.++..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-----P-NLTPLVGLEELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-----C-CCTTCTTCCEEECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEE
T ss_pred ChhhccCCCCCCEEECCCCccccc-----c-cccccccccEEECcCCcCcccC----cccccCccCCCEEEeCCCcCceE
Confidence 112467889999999999998873 2 3667899999999999998753 34566679999999999998865
Q ss_pred HHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
... .+..+++|++|++++|.++...... +..+++|++|+|++|.+.
T Consensus 258 ~~~----~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERN----AFDGLASLVELNLAHNNLSSLPHDL----FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTT----TTTTCTTCCEEECCSSCCSCCCTTS----STTCTTCCEEECCSSCEE
T ss_pred CHH----HhcCCCCCCEEECCCCcCCccChHH----hccccCCCEEEccCCCcC
Confidence 432 3466789999999999998765543 345699999999999765
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.9e-19 Score=180.13 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
++|++|+|++|.|+... ..+ .++|++|++++|++++... +..+++|++|++++|.+++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp-----~~~--~~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVP-----KGL--PAKLRVLDLSSNRLNRAPQ------PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TTCCCEECCSSCCCSCC-----SCC--CSCCSCEECCSCCCCSCCC------TTSCCCCSCEECSSTTTSCC
T ss_pred CcCCEEECCCCCCCchh-----hhh--cCCCCEEECCCCcCCCCch------hhhCCCccEEECcCCCCCCC
Confidence 45666666666555221 111 2577777777777765421 23457777777777777653
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.4e-20 Score=184.43 Aligned_cols=251 Identities=18% Similarity=0.135 Sum_probs=179.4
Q ss_pred cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (600)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 327 (600)
-+.++.+++.++.. +.. ..++|++|++++|.+++.. +..+..+++|++|++++|.++.... ..+.
T Consensus 13 ~~~~~c~~~~l~~i-----p~~--~~~~l~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~ 77 (285)
T 1ozn_A 13 KVTTSCPQQGLQAV-----PVG--IPAASQRIFLHGNRISHVP----AASFRACRNLTILWLHSNVLARIDA----AAFT 77 (285)
T ss_dssp SCEEECCSSCCSSC-----CTT--CCTTCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred CeEEEcCcCCcccC-----CcC--CCCCceEEEeeCCcCCccC----HHHcccCCCCCEEECCCCccceeCH----hhcC
Confidence 36788888887763 221 2368999999999987532 2345678999999999998876533 3466
Q ss_pred cCCCCCEEEccCCC-CCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHH
Q 007526 328 GNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (600)
Q Consensus 328 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 406 (600)
.+++|++|++++|. ++......+ ...++|++|++++|.++.. .+..+..+++|++|++++|.++..
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---- 144 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQAL---- 144 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----
T ss_pred CccCCCEEeCCCCCCccccCHHHh-----cCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCccccc----
Confidence 78999999999997 665322212 3445899999999998873 345577889999999999988863
Q ss_pred HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (600)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 486 (600)
....+..+++|++|++++|.++.... ..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++.
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSCC
T ss_pred CHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCCCcccccCH----hHccCcccccEeeCCCCcCCcC
Confidence 22346678999999999999886432 235566999999999999877533 3345678999999999999887
Q ss_pred HHHHHHHHHhhCCCccEEEccCCCCChH-HHHHHHHHHhhcCccccEEEccCCCCChhHH
Q 007526 487 GAEFVADMLRYNNTISILDLRANGLRDE-GAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 545 (600)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~ 545 (600)
.... +..+++|++|++++|.+... ....+... ++.++.+.+.+....+
T Consensus 217 ~~~~----~~~l~~L~~L~l~~N~~~c~~~~~~~~~~-------l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 217 PTEA----LAPLRALQYLRLNDNPWVCDCRARPLWAW-------LQKFRGSSSEVPCSLP 265 (285)
T ss_dssp CHHH----HTTCTTCCEEECCSSCEECSGGGHHHHHH-------HHHCCSEECCCBEEES
T ss_pred CHHH----cccCcccCEEeccCCCccCCCCcHHHHHH-------HHhcccccCccccCCc
Confidence 6544 44569999999999987632 22223332 3444455565554443
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=7.5e-21 Score=202.20 Aligned_cols=217 Identities=24% Similarity=0.236 Sum_probs=131.5
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 325 (600)
++|++|+|++|.++... +..+..+++|++|+|++|.+++.. + +..+++|++|++++|.++..+
T Consensus 34 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N~l~~l~------- 96 (487)
T 3oja_A 34 WNVKELDLSGNPLSQIS----AADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNNYVQELL------- 96 (487)
T ss_dssp GGCCEEECCSSCCCCCC----GGGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSSEEEEEE-------
T ss_pred CCccEEEeeCCcCCCCC----HHHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCCcCCCCC-------
Confidence 36778888877777632 233455677777777777775422 1 456777777777777765422
Q ss_pred hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (600)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (600)
..++|++|++++|.+++... ...++|+.|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~--- 159 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTV--- 159 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEE---
T ss_pred --CCCCcCEEECcCCcCCCCCc--------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCc---
Confidence 34677777777777765321 1234677777777777663 233455667777777777777653
Q ss_pred HHHHHhh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526 406 KIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (600)
Q Consensus 406 ~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 484 (600)
.+..+. .+++|++|++++|.++... ....+++|++|+|++|.|++... .+..+++|+.|++++|.++
T Consensus 160 -~~~~l~~~l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 160 -NFAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGP-----EFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp -EGGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECG-----GGGGGTTCSEEECTTSCCC
T ss_pred -ChHHHhhhCCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCCCCCH-----hHcCCCCccEEEecCCcCc
Confidence 222232 4567777777777766531 12234677777777776665322 1344566777777777666
Q ss_pred hhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 485 ASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
..+ ..+..+++|+.|++++|.+..
T Consensus 228 ~lp-----~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 228 LIE-----KALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp EEC-----TTCCCCTTCCEEECTTCCBCH
T ss_pred ccc-----hhhccCCCCCEEEcCCCCCcC
Confidence 432 223445667777777776663
No 82
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=8.5e-21 Score=189.70 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=7.0
Q ss_pred CccEEEccCCCCC
Q 007526 500 TISILDLRANGLR 512 (600)
Q Consensus 500 ~L~~L~Ls~n~i~ 512 (600)
+|++|++++|.++
T Consensus 249 ~L~~L~L~~N~~~ 261 (306)
T 2z66_A 249 SLAFLNLTQNDFA 261 (306)
T ss_dssp TCCEEECTTCCEE
T ss_pred cCCEEEccCCCee
Confidence 5555555555544
No 83
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.74 E-value=3.4e-17 Score=150.20 Aligned_cols=140 Identities=22% Similarity=0.231 Sum_probs=106.1
Q ss_pred HHHHHHHHHhCCCccEEEcCCC-CCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCC
Q 007526 151 KQTLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP 229 (600)
Q Consensus 151 ~~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 229 (600)
.+.+..++...+.|++|+|++| .+++.++..++..+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455666677777888888777 777777777777777777777777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHhhCCCcCEEEe--ecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhh
Q 007526 230 IGDEGVKCLCDILVDNAGVERLQL--SSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG 290 (600)
Q Consensus 230 l~~~~~~~l~~~l~~~~~L~~L~L--s~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 290 (600)
|++.|...++..+..+++|++|+| ++|.+++.+...++..+..+++|++|+|++|.+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 777777777777777777777777 6777777777777777777777777777777776554
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=7.8e-20 Score=194.36 Aligned_cols=239 Identities=23% Similarity=0.244 Sum_probs=179.7
Q ss_pred hcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHH
Q 007526 215 QSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294 (600)
Q Consensus 215 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 294 (600)
..+++|++|+|++|.++.. .+..+..+++|++|+|++|.++.... +..+++|++|+|++|.+++..
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~---- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL---- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE----
T ss_pred ccCCCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC----
Confidence 3345899999999999874 23456678999999999999876321 566799999999999886422
Q ss_pred HHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChh
Q 007526 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK 374 (600)
Q Consensus 295 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 374 (600)
..++|++|++++|.++.... ..+++|+.|++++|.+++.....+ ...++|+.|++++|.++..
T Consensus 97 -----~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 97 -----VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp -----ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCG-----GGGSSEEEEECTTSCCCEE
T ss_pred -----CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhh-----cCCCCCCEEECCCCCCCCc
Confidence 35899999999999876543 246789999999999987422111 2345899999999999874
Q ss_pred hHHHHHHHHH-hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC
Q 007526 375 GAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453 (600)
Q Consensus 375 ~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (600)
.+..+. .+++|++|+|++|.+++. .....+++|++|++++|.++... ..+..+++|+.|+|++|
T Consensus 160 ----~~~~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 160 ----NFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMG-----PEFQSAAGVTWISLRNN 224 (487)
T ss_dssp ----EGGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEEC-----GGGGGGTTCSEEECTTS
T ss_pred ----ChHHHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCCC-----HhHcCCCCccEEEecCC
Confidence 233343 689999999999999874 22335789999999999998732 23556699999999999
Q ss_pred CCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526 454 PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (600)
Q Consensus 454 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (600)
.++.. ...+..+++|+.|++++|.+... .+...+..++.|+.++++
T Consensus 225 ~l~~l-----p~~l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 225 KLVLI-----EKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCEE-----CTTCCCCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHH
T ss_pred cCccc-----chhhccCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEecc
Confidence 98853 23356678999999999998733 233445556777777664
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=4.6e-18 Score=169.73 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=121.7
Q ss_pred CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (600)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (600)
++|++|++++|.+++. + .+..+++|++|++++|.++.... +..+++|++|++++|.+++.. .
T Consensus 41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~------~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS------A 102 (308)
T ss_dssp HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch------h
Confidence 6678888887777542 1 35567777777777777765432 556777777777777776531 1
Q ss_pred hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (600)
Q Consensus 354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (600)
+ ...++|++|++++|.++.. + .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++...
T Consensus 103 ~-~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~-----~-l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 103 I-AGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNIS-----P-LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp G-TTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred h-cCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCc-----c-ccCCCCccEEEccCCcCCCChh-
Confidence 2 2344677777777777662 2 2566777777777777776531 1 5566777777777777765321
Q ss_pred HHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
+..+++|++|++++|.+++... +..+++|++|++++|.+++... +..+++|++|++++|.++.
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP------LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCGG------GTTCTTCCEEEEEEEEEEC
T ss_pred -----hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcccc------ccCCCCCCEEEccCCeeec
Confidence 4555777777777776665422 4556677777777777766541 4555777777777776654
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=7.6e-18 Score=168.16 Aligned_cols=192 Identities=21% Similarity=0.228 Sum_probs=144.4
Q ss_pred CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 325 (600)
++|++|++++|.++.. . .+..+++|++|++++|.+++.. . +..+++|++|++++|.++... .
T Consensus 41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~-----~-~~~l~~L~~L~L~~n~l~~~~------~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLA-----P-LKNLTKITELELSGNPLKNVS------A 102 (308)
T ss_dssp HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCCh-----h-HccCCCCCEEEccCCcCCCch------h
Confidence 7888899988888763 1 2556788899999988886532 1 567888999999988887642 4
Q ss_pred hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (600)
Q Consensus 326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (600)
+..+++|++|++++|.+++.. .+ ...++|++|++++|.++.. +. +..+++|++|++++|.+++.
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~--- 166 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVT------PL-AGLSNLQVLYLDLNQITNI-----SP-LAGLTNLQYLSIGNAQVSDL--- 166 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCG------GG-TTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC---
T ss_pred hcCCCCCCEEECCCCCCCCch------hh-cCCCCCCEEECCCCccCcC-----cc-ccCCCCccEEEccCCcCCCC---
Confidence 667888999999988887632 12 3455888999998888773 22 67888899999988888873
Q ss_pred HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (600)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 485 (600)
.. +..+++|++|++++|.+++... +..+++|++|++++|.+++.. .+..+++|++|++++|.++.
T Consensus 167 --~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 167 --TP-LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GG-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGTTCTTCCEEEEEEEEEEC
T ss_pred --hh-hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc------cccCCCCCCEEEccCCeeec
Confidence 22 6678888999999888876432 566788999999988887654 25678888999998888755
Q ss_pred h
Q 007526 486 S 486 (600)
Q Consensus 486 ~ 486 (600)
.
T Consensus 232 ~ 232 (308)
T 1h6u_A 232 Q 232 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=4.6e-19 Score=174.31 Aligned_cols=209 Identities=18% Similarity=0.121 Sum_probs=101.7
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHH
Q 007526 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (600)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 381 (600)
++|++|++++|.++..+. ..+..+++|++|++++|.++......+ ...++|++|++++|.++.. .+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHLSTLILTGNPIQSL----ALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEECT----TTTTTCTTCSEEECTTCCCCEECTTTT-----TTCTTCCEEECTTCCCCEE----CTT
T ss_pred CCccEEECCCCcccccCH----hHhccccCCcEEECCCCcCCccCHHHc-----cCCcCCCEEECCCCccCcc----Chh
Confidence 457777777777665443 234456677777777776654321111 2334666666666666553 123
Q ss_pred HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH
Q 007526 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461 (600)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 461 (600)
.+..+++|++|++++|.+.... ...+..+++|++|++++|.++... ++..+..+++|++|++++|.++.....
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred hhcCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHH
Confidence 3455666666666666655421 112444556666666666554421 122344445566666666655543222
Q ss_pred HHHHHHhhCCCcc-EEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007526 462 ALSEVLKFHGNIN-TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540 (600)
Q Consensus 462 ~l~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i 540 (600)
.+.. +...+.|. +|++++|.++......+ ...+|++|++++|.++......+... ++|++|++++|++
T Consensus 168 ~~~~-l~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~ 236 (276)
T 2z62_A 168 DLRV-LHQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPW 236 (276)
T ss_dssp GGHH-HHTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSCCCTTTTTTC-----CSCCEEECCSSCB
T ss_pred Hhhh-hhhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceeecCHhHhccc-----ccccEEEccCCcc
Confidence 2221 12222222 55555555544332211 11345555555555554322222211 4455555555555
Q ss_pred C
Q 007526 541 R 541 (600)
Q Consensus 541 ~ 541 (600)
.
T Consensus 237 ~ 237 (276)
T 2z62_A 237 D 237 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 88
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.67 E-value=1.2e-15 Score=138.41 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=82.1
Q ss_pred HHHHHHhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526 379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (600)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (600)
+...+.+.+.|++|+|++| .|++.|+..+++++..++.|++|+|++|.|++.+..+++.+|..++.|++|+|++|.|++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4444455556666666654 666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhhCCCccEEeccCc---CCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 458 DGAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~l~~n---~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
.|...+++.+..++.|++|++++| .|++.+...++++++.+++|+.|+++.|.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 666666666666666666666543 4566655666666666666666666555433
No 89
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.66 E-value=2.3e-15 Score=136.54 Aligned_cols=131 Identities=11% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHhhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526 408 ADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (600)
Q Consensus 408 ~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 486 (600)
...+...+.|++|+|++| .|.+.+...+++++..++.|++|+|++|.|++.+...++.+++.++.|++|+|++|.|++.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 333444445555555543 5555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhCCCccEEEccCC---CCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526 487 GAEFVADMLRYNNTISILDLRAN---GLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (600)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~Ls~n---~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~ 539 (600)
+...++++++.+++|++|+|++| .+++.+...+.++++. |++|++|+++.|.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCC
Confidence 55555555555555555555432 3444444444444432 3445555554443
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.6e-18 Score=170.34 Aligned_cols=165 Identities=20% Similarity=0.189 Sum_probs=89.9
Q ss_pred hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHH
Q 007526 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (600)
Q Consensus 327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 406 (600)
..+++|++|++++|.++......+ ...++|++|++++|.++.. .+..+..+++|++|++++|.+++..
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--- 140 (276)
T 2z62_A 73 QSLSHLSTLILTGNPIQSLALGAF-----SGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFK--- 140 (276)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTT-----TTCTTCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCC---
T ss_pred cCCcCCCEEECCCCccCccChhhh-----cCCccccEEECCCCCcccc----CchhcccCCCCCEEECcCCccceec---
Confidence 344555555555555543211111 1223555666655555442 1112455666777777766665421
Q ss_pred HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcC-EEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT-SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (600)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 485 (600)
++..+..+++|++|++++|.++......+... ...+.|. +|++++|.++......+ ...+|++|++++|.++.
T Consensus 141 l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSC
T ss_pred CchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceee
Confidence 23345566777777777777665433333322 1223333 77777777765422111 23378888888888776
Q ss_pred hHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 486 SGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
.... .+..+++|++|++++|.++.
T Consensus 215 ~~~~----~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 215 VPDG----IFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCTT----TTTTCCSCCEEECCSSCBCC
T ss_pred cCHh----HhcccccccEEEccCCcccc
Confidence 5443 23456888888888887774
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=8.1e-18 Score=166.32 Aligned_cols=176 Identities=22% Similarity=0.195 Sum_probs=73.9
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHH
Q 007526 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (600)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 298 (600)
++++|++++|.++.. ....+..+++|++|++++|.++.... ...+++|++|++++|.++. ++..+
T Consensus 32 ~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~ 96 (290)
T 1p9a_G 32 DTTILHLSENLLYTF----SLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLG 96 (290)
T ss_dssp TCCEEECTTSCCSEE----EGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCT
T ss_pred CCCEEEcCCCcCCcc----CHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCCc-----Cchhh
Confidence 455555555554432 11223334555555555555443211 0233555555555555531 22223
Q ss_pred hhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH
Q 007526 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (600)
Q Consensus 299 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~ 378 (600)
..+++|++|++++|.++.... ..+..+++|++|++++|.++.... ......++|+.|++++|.++..
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~l---- 163 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNLTEL---- 163 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCSCC----
T ss_pred ccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCcCCcc----
Confidence 334455555555554443221 123344555555555555443211 1111223455555555544431
Q ss_pred HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCC
Q 007526 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (600)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (600)
.+..+..+++|++|++++|.++. ++..+.....|++|++++|.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence 11122344455555555554443 233333334444444444443
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.3e-18 Score=168.69 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=108.4
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHH
Q 007526 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (600)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 382 (600)
..+.++++++.++..+. . -.+++++|++++|.++...... + ...++|++|++++|.++.. .+..
T Consensus 17 ~~~~l~~~~~~l~~ip~-----~--~~~~l~~L~l~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~i----~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-----N--IPADTKKLDLQSNKLSSLPSKA----F-HRLTKLRLLYLNDNKLQTL----PAGI 80 (270)
T ss_dssp TTTEEECTTSCCSSCCS-----C--CCTTCSEEECCSSCCSCCCTTS----S-SSCTTCCEEECCSSCCSCC----CTTT
T ss_pred CCCEEEccCCCCCccCC-----C--CCCCCCEEECcCCCCCeeCHHH----h-cCCCCCCEEECCCCccCee----Chhh
Confidence 45677777776654321 1 1245777777777665432111 1 2334677777777766542 1122
Q ss_pred HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (600)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (600)
+..+++|++|++++|.+... ....+..+++|++|++++|.++.... ..+..+++|++|+|++|.|+....
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-- 150 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSLGYNELQSLPK-- 150 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred hcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEECCCCcCCccCH--
Confidence 35566677777777666542 11234455666777776666655322 223445666666666666654322
Q ss_pred HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 463 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
..+..+++|++|++++|.++...... +..+++|++|++++|.++......+... ++|++|++++|.+.
T Consensus 151 --~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 --GVFDKLTSLKELRLYNNQLKRVPEGA----FDKLTELKTLKLDNNQLKRVPEGAFDSL-----EKLKMLQLQENPWD 218 (270)
T ss_dssp --TTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBC
T ss_pred --hHccCCcccceeEecCCcCcEeChhH----hccCCCcCEEECCCCcCCcCCHHHhccc-----cCCCEEEecCCCee
Confidence 11244566666666666665543322 2334666666666666665433222221 55666666666654
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=3.9e-18 Score=168.56 Aligned_cols=216 Identities=16% Similarity=0.071 Sum_probs=137.6
Q ss_pred hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (600)
Q Consensus 300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l 379 (600)
.++++++++++++.++..+. . -.++++.|++++|.++......+ ...++|+.|++++|.++..
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~-----~--~~~~l~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----- 70 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPP-----D--LPKDTTILHLSENLLYTFSLATL-----MPYTRLTQLNLDRAELTKL----- 70 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCS-----C--CCTTCCEEECTTSCCSEEEGGGG-----TTCTTCCEEECTTSCCCEE-----
T ss_pred ccCCccEEECCCCCCCcCCC-----C--CCCCCCEEEcCCCcCCccCHHHh-----hcCCCCCEEECCCCccCcc-----
Confidence 46778888888887765432 1 12578888888888775422222 2445788888888887763
Q ss_pred HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (600)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (600)
+. ...+++|++|++++|.++. ++..+..+++|++|++++|+++.... ..+..+++|++|+|++|.|+...
T Consensus 71 ~~-~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 71 QV-DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp EC-CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCCC
T ss_pred cC-CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCCCCCccC
Confidence 22 1567788888888887774 44445567788888888888775322 33455578888888888776542
Q ss_pred HHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (600)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~ 539 (600)
. ..+..+++|++|++++|+++...... +..+++|++|++++|.|+..... +.. ..+|++|++++|.
T Consensus 141 ~----~~~~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~ip~~-~~~-----~~~L~~l~L~~Np 206 (290)
T 1p9a_G 141 P----GLLTPTPKLEKLSLANNNLTELPAGL----LNGLENLDTLLLQENSLYTIPKG-FFG-----SHLLPFAFLHGNP 206 (290)
T ss_dssp T----TTTTTCTTCCEEECTTSCCSCCCTTT----TTTCTTCCEEECCSSCCCCCCTT-TTT-----TCCCSEEECCSCC
T ss_pred h----hhcccccCCCEEECCCCcCCccCHHH----hcCcCCCCEEECCCCcCCccChh-hcc-----cccCCeEEeCCCC
Confidence 2 22345677888888888877654432 33457888888888877753221 111 1567888888887
Q ss_pred CC-hhHHHHHHHHHHhCc
Q 007526 540 IR-DDGAFAIAQALKANE 556 (600)
Q Consensus 540 i~-~~~~~~l~~~~~~~~ 556 (600)
+. +-....+..++..+.
T Consensus 207 ~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 207 WLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp BCCSGGGHHHHHHHHHTG
T ss_pred ccCcCccHHHHHHHHhCc
Confidence 65 333444555555444
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=1.7e-17 Score=162.55 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=6.7
Q ss_pred CCCcCEEECcCCCC
Q 007526 442 NSVITSLDLAYNPI 455 (600)
Q Consensus 442 ~~~L~~L~Ls~n~i 455 (600)
+++|++|++++|++
T Consensus 204 l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 204 LTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CcCCCEEEccCCCc
Confidence 34455555555443
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3.3e-17 Score=160.52 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (600)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (600)
+..+++|++|++++|.+++. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.+++...
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~-- 198 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSL----PKGVFDKLTNLTELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKSVPD-- 198 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred hccCCCCCEEECCCCccCcc----CHHHhccCccCCEEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCccCH--
Confidence 34455555555555555432 11223445566666666665554211 223444666666666666654322
Q ss_pred HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 463 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
..+..+++|++|++++|.+... |+.|+.|++.+|.+++.
T Consensus 199 --~~~~~l~~L~~L~l~~N~~~~~-----------~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 199 --GVFDRLTSLQYIWLHDNPWDCT-----------CPGIRYLSEWINKHSGV 237 (272)
T ss_dssp --TTTTTCTTCCEEECCSSCBCCC-----------TTTTHHHHHHHHHTGGG
T ss_pred --HHHhCCcCCCEEEccCCCcccc-----------CcHHHHHHHHHHhCCCc
Confidence 2234556777777777765432 45666666666655543
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=9.9e-18 Score=164.10 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=127.5
Q ss_pred CccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhh
Q 007526 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (600)
Q Consensus 275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 354 (600)
.++.++++++.++. ++.. -.+++++|++++|.++.... ..+..+++|++|++++|.++... ...
T Consensus 17 ~~~~l~~~~~~l~~-----ip~~--~~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~i~-----~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-----IPSN--IPADTKKLDLQSNKLSSLPS----KAFHRLTKLRLLYLNDNKLQTLP-----AGI 80 (270)
T ss_dssp TTTEEECTTSCCSS-----CCSC--CCTTCSEEECCSSCCSCCCT----TSSSSCTTCCEEECCSSCCSCCC-----TTT
T ss_pred CCCEEEccCCCCCc-----cCCC--CCCCCCEEECcCCCCCeeCH----HHhcCCCCCCEEECCCCccCeeC-----hhh
Confidence 46777887777753 2221 12567888888887765432 24556777888888887776421 111
Q ss_pred hcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHH
Q 007526 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (600)
Q Consensus 355 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (600)
....++|++|++++|.++.. .+..+..+++|++|++++|.++.. ....+..+++|++|++++|.++....
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~-- 150 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPK-- 150 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred hcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCH--
Confidence 13345788888888877663 123346677788888888877653 12335567778888888887765322
Q ss_pred HHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
..+..+++|++|++++|.++..... .+..+++|++|++++|.++...... +..+++|+.|++++|.+.
T Consensus 151 --~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 --GVFDKLTSLKELRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLKRVPEGA----FDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp --TTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBC
T ss_pred --hHccCCcccceeEecCCcCcEeChh----HhccCCCcCEEECCCCcCCcCCHHH----hccccCCCEEEecCCCee
Confidence 2244557788888888877654322 2345677888888888777654432 344577888888887654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.9e-15 Score=149.30 Aligned_cols=124 Identities=23% Similarity=0.241 Sum_probs=60.5
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
+|++|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. ..+
T Consensus 91 ~L~~L~l~~n~l~~-----~~-~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l 152 (291)
T 1h6t_A 91 NLGWLFLDENKVKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVL 152 (291)
T ss_dssp TCCEEECCSSCCCC-----GG-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGG
T ss_pred CCCEEECCCCcCCC-----Ch-hhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhh
Confidence 45555555554444 11 144455555555555555441 1244455555555555555442 223
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
..+++|++|++++|.+++... +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCCh------hhccCCCCCEEECcCCcccC
Confidence 444555555555555544321 344555555555555555431 13344555555555555544
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=8.7e-16 Score=151.82 Aligned_cols=171 Identities=23% Similarity=0.232 Sum_probs=126.4
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHH
Q 007526 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 408 (600)
Q Consensus 329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 408 (600)
+++|+.|++++|.+.+.. .+ ...++|++|++++|.++.. +. +..+++|++|++++|.+++.
T Consensus 45 l~~L~~L~l~~~~i~~~~------~~-~~l~~L~~L~L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~------ 105 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ------GI-QYLPNVTKLFLNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDL------ 105 (291)
T ss_dssp HHTCCEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCG------
T ss_pred cCcccEEEccCCCcccCh------hH-hcCCCCCEEEccCCccCCC-----cc-cccCCCCCEEECCCCcCCCC------
Confidence 456777777777766531 12 2344788888888888763 33 67888999999999988873
Q ss_pred HHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHH
Q 007526 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 488 (600)
Q Consensus 409 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~ 488 (600)
..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++...
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred hhhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh
Confidence 2367788999999999988873 2466678899999999988764 345678889999999998887643
Q ss_pred HHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526 489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (600)
Q Consensus 489 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~ 543 (600)
+..+++|++|++++|.|++.. .+... ++|+.|++++|++...
T Consensus 174 ------l~~l~~L~~L~L~~N~i~~l~--~l~~l-----~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 ------LAGLTKLQNLYLSKNHISDLR--ALAGL-----KNLDVLELFSQECLNK 215 (291)
T ss_dssp ------GTTCTTCCEEECCSSCCCBCG--GGTTC-----TTCSEEEEEEEEEECC
T ss_pred ------hcCCCccCEEECCCCcCCCCh--hhccC-----CCCCEEECcCCcccCC
Confidence 556789999999999888742 13222 7789999998887653
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=7.9e-17 Score=155.85 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=90.9
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.++.|++++|.++.. .+..+..+++|++|++++|.+++. ....+..+++|++|++++|.++.... ..+
T Consensus 36 ~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~ 103 (251)
T 3m19_A 36 DTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAGVFDDLTELGTLGLANNQLASLPL----GVF 103 (251)
T ss_dssp TCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCCT----TTT
T ss_pred CCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHhHhccCCcCCEEECCCCcccccCh----hHh
Confidence 456666666655542 122345556666666666666542 22234455666666666666654321 223
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|+|++|.|+.... ..+..+++|++|++++|.++...... +..+++|++|+|++|.++......+
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTNQLQSIPAGA----FDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCCcCCccCHHH----cCcCcCCCEEECCCCcCCccCHHHH
Confidence 444666666666666654321 12244566677777777666554322 3334677777777776665433333
Q ss_pred HHHHhhcCccccEEEccCCCCChh--HHHHHHHHHH
Q 007526 520 AQSFKVVNEALTSIDLAFNEIRDD--GAFAIAQALK 553 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~~~--~~~~l~~~~~ 553 (600)
... ++|++|++++|++... ....+..+..
T Consensus 176 ~~l-----~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 176 DRL-----GKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp TTC-----TTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred hCC-----CCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 222 5677777777766543 3333444444
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=5.5e-17 Score=156.98 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=138.9
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
..+.++++++.++. ++..+ .+++++|++++|.+... ....+..+++|++|++++|.++... +..+
T Consensus 15 ~~~~l~~~~~~l~~-----~p~~~--~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-----VPSGI--PADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTLS----AGVF 79 (251)
T ss_dssp GGTEEECTTCCCSS-----CCSCC--CTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCC----TTTT
T ss_pred CCeEEecCCCCccc-----cCCCC--CCCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCccC----HhHh
Confidence 57789999888876 44322 25899999999998874 2345677899999999999998753 2345
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|+|++|.++.... ..+..+++|++|++++|.|+...... +..+++|++|+|++|.|+......+
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCcCCEEECCCCcccccCh----hHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHc
Confidence 667999999999999886532 23456789999999999998765433 3456999999999999997655444
Q ss_pred HHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~ 573 (600)
... ++|++|+|++|+|++.....+..+. .|++|+|++|++...
T Consensus 152 ~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 DKL-----TNLQTLSLSTNQLQSVPHGAFDRLG------KLQTITLFGNQFDCS 194 (251)
T ss_dssp TTC-----TTCCEEECCSSCCSCCCTTTTTTCT------TCCEEECCSCCBCTT
T ss_pred CcC-----cCCCEEECCCCcCCccCHHHHhCCC------CCCEEEeeCCceeCC
Confidence 433 7899999999999976654443332 399999999999876
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=6.5e-15 Score=136.67 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=15.9
Q ss_pred hhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (600)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (600)
+..+++|++|++++|.+++.. .+..+++|++|++++|+|+
T Consensus 155 l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred hcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence 333444444444444444311 2333344555555554443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=2.4e-15 Score=139.62 Aligned_cols=111 Identities=13% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (600)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (600)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++....
T Consensus 62 l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~i~~~~~~- 130 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDSILT- 130 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCEEECCSSBCBGGGHH-
T ss_pred HhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccC----hhhcCCCCCCEEEecCCccCcHhHH-
Confidence 33444444444444443331 123334444444444444443211 1122334455555555544443222
Q ss_pred HHHHHhhCCCccEEeccCcC-CChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 463 LSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 463 l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
.+..+++|++|++++|. +++.. .+..+++|++|++++|.+++
T Consensus 131 ---~l~~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 131 ---KINTLPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ---HHTTCSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCCC
T ss_pred ---HHhhCCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCcC
Confidence 12334455555555554 44431 13334555555555555544
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=5e-16 Score=149.03 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=7.9
Q ss_pred CCccEEEccCCCCCh
Q 007526 499 NTISILDLRANGLRD 513 (600)
Q Consensus 499 ~~L~~L~Ls~n~i~~ 513 (600)
++|++|++++|.++.
T Consensus 205 ~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTA 219 (239)
T ss_dssp BCCSEEECTTCCCCC
T ss_pred cCCcEEECCCCcccc
Confidence 455555555555544
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=9.2e-15 Score=158.48 Aligned_cols=174 Identities=22% Similarity=0.233 Sum_probs=132.6
Q ss_pred hhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH
Q 007526 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (600)
Q Consensus 299 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~ 378 (600)
..+..|+.|++++|.+.... .+..+++|+.|+|++|.+.+... + ...++|+.|+|++|.+..
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~------l-~~l~~L~~L~Ls~N~l~~----- 101 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP------L-TNLKNLGWLFLDENKIKD----- 101 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCC-----
T ss_pred hcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh------h-ccCCCCCEEECcCCCCCC-----
Confidence 35688999999999887643 36678899999999998876432 2 344589999999998877
Q ss_pred HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (600)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (600)
++ .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.|.+.
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCC
T ss_pred Ch-hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCc
Confidence 32 467888899999999988863 3467788899999999988874 3466778899999998888765
Q ss_pred HHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG 515 (600)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 515 (600)
.. +..+++|+.|+|++|.|++.. .+..+++|+.|+|++|.+.+.+
T Consensus 169 ~~------l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 VP------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GG------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSEEEECCC
T ss_pred hh------hccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCCcCcCCc
Confidence 32 567788889999988887752 3566788888888888777643
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=2.2e-14 Score=155.59 Aligned_cols=172 Identities=24% Similarity=0.185 Sum_probs=141.4
Q ss_pred CCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHH
Q 007526 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS 352 (600)
Q Consensus 273 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 352 (600)
+++|+.|++++|.+.+. ..+..+++|+.|+|++|.++.... +..+++|+.|+|++|.+.+..
T Consensus 42 L~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------ 103 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS------ 103 (605)
T ss_dssp HTTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT------
T ss_pred CCCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh------
Confidence 38899999999998653 246789999999999999887542 678999999999999988632
Q ss_pred hhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHH
Q 007526 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432 (600)
Q Consensus 353 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 432 (600)
.+ ...++|+.|+|++|.+... ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++...
T Consensus 104 ~l-~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 104 SL-KDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TS-TTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred hh-ccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh
Confidence 22 3456899999999999873 3478899999999999999873 457789999999999999987432
Q ss_pred HHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhH
Q 007526 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (600)
Q Consensus 433 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 487 (600)
+..+++|+.|+|++|.|++. ..+..+++|+.|++++|.+...+
T Consensus 171 ------l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 ------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEECCSEEEECCC
T ss_pred ------hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEEccCCcCcCCc
Confidence 66779999999999999874 23577899999999999886653
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=5.7e-15 Score=158.36 Aligned_cols=187 Identities=19% Similarity=0.218 Sum_probs=99.9
Q ss_pred CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHH
Q 007526 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (600)
Q Consensus 190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (600)
.+++.|++++|.++. ++..+ .++|++|+|++|.|+. ++ ..+++|++|++++|+++.. +.
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~~i-----p~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLSTL-----PE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCC-----CC-
T ss_pred CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCCCc-----ch-
Confidence 467777777776652 22111 2567777777777663 22 2346677777777766652 12
Q ss_pred HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHH
Q 007526 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (600)
Q Consensus 270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 349 (600)
+. .+|++|++++|.++. ++. .+++|+.|++++|.++..+. .+++|++|++++|.++....
T Consensus 118 l~--~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~lp~-- 177 (571)
T 3cvr_A 118 LP--ASLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTFLPE-- 177 (571)
T ss_dssp CC--TTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCCC--
T ss_pred hh--cCCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCCcch--
Confidence 11 267777777776653 222 35666666666666654221 34566666666666654211
Q ss_pred HHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCC-------cEEEccCCCCChHHHHHHHHHhhcCCCccEEEc
Q 007526 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL-------LWINLYMNDIGDEGAEKIADALKQNRTITTIDL 422 (600)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L-------~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 422 (600)
+. ++|+.|++++|.|+. ++. +.. +| +.|+|++|.|+. ++..+..+++|++|++
T Consensus 178 ----l~---~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 178 ----LP---ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIIL 237 (571)
T ss_dssp ----CC---TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEEC
T ss_pred ----hh---CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEe
Confidence 11 356666666666654 222 111 33 566666665553 3444444555666666
Q ss_pred cCCCCChHHHHHHHH
Q 007526 423 GGNNIHSKGASAIAR 437 (600)
Q Consensus 423 ~~n~l~~~~~~~l~~ 437 (600)
++|.++......+..
T Consensus 238 ~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSSCCHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHH
Confidence 666665554444433
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=6e-15 Score=158.20 Aligned_cols=194 Identities=19% Similarity=0.157 Sum_probs=123.3
Q ss_pred CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (600)
Q Consensus 274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 353 (600)
.+|+.|++++|.+++ ++..+ .++|++|++++|.++..+ ..+++|++|++++|.++.. ..
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-----p~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-----PE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-----CC-
T ss_pred CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-----ch-
Confidence 478888888888853 23222 367888888888877433 2467888888888887752 11
Q ss_pred hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (600)
Q Consensus 354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (600)
+.. +|+.|++++|.++. ++. .+++|++|++++|.|+. ++. .+++|++|++++|.|+...
T Consensus 118 l~~---~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp-- 176 (571)
T 3cvr_A 118 LPA---SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLP-- 176 (571)
T ss_dssp CCT---TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCC--
T ss_pred hhc---CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcc--
Confidence 211 68888888888776 443 56788888888887775 222 3567888888888777622
Q ss_pred HHHHHhhcCCCcCEEECcCCCCChhHHHHHHH-HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSE-VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
. +. ++|++|+|++|.|+.... +.. .....+.|++|++++|.|+..+. .+..+++|+.|+|++|.++
T Consensus 177 ---~-l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 177 ---E-LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHIPE-----NILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ---C-CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCCCG-----GGGGSCTTEEEECCSSSCC
T ss_pred ---h-hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceecCH-----HHhcCCCCCEEEeeCCcCC
Confidence 2 22 678888888887764322 111 01112233777777777765422 2333577777777777777
Q ss_pred hHHHHHHHHH
Q 007526 513 DEGAKCLAQS 522 (600)
Q Consensus 513 ~~~~~~l~~~ 522 (600)
+..+..+...
T Consensus 244 ~~~p~~l~~l 253 (571)
T 3cvr_A 244 SRIRESLSQQ 253 (571)
T ss_dssp HHHHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 7666666554
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=3.4e-16 Score=150.17 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=18.1
Q ss_pred CCccEEEccCCC-CChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526 499 NTISILDLRANG-LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (600)
Q Consensus 499 ~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~ 542 (600)
++|++|++++|. ++......+... .++|++|++++|+|+.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l----~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGV----YSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTC----SBCCSEEECTTCCCCC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhcc----ccCCcEEECCCCcccc
Confidence 455555555552 554322222110 1345566666665553
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=1.9e-15 Score=147.04 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=117.9
Q ss_pred CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH
Q 007526 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (600)
Q Consensus 330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (600)
.++..++++++.+++.. .+ . ..++|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~-~----~l~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~L~~N~i~~~-----~~ 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQ-K----ELSGVQNFNGDNSNIQS-----LA-GMQFFTNLKELHLSHNQISDL-----SP 80 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CH-H----HHTTCSEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC-----GG
T ss_pred HHHHHHHhcCCCccccc--ch-h----hcCcCcEEECcCCCccc-----ch-HHhhCCCCCEEECCCCccCCC-----hh
Confidence 34666777788776543 11 1 12378888888888876 33 467788888888888888773 22
Q ss_pred HhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHH
Q 007526 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 489 (600)
Q Consensus 410 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 489 (600)
+..+++|++|++++|++++.. . +.. ++|++|++++|.|++. ..+..+++|++|++++|++++..
T Consensus 81 -l~~l~~L~~L~L~~N~l~~l~-----~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~-- 144 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKNLN-----G-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV-- 144 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSCCT-----T-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG--
T ss_pred -hccCCCCCEEECCCCccCCcC-----c-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh--
Confidence 667788888888888887632 1 222 7788888888888764 23566788888888888887762
Q ss_pred HHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526 490 FVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (600)
Q Consensus 490 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~ 543 (600)
.+..+++|++|++++|.|++. ..+..+ ++|+.|++++|.+...
T Consensus 145 ----~l~~l~~L~~L~L~~N~i~~~--~~l~~l-----~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 ----MLGFLSKLEVLDLHGNEITNT--GGLTRL-----KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ----GGGGCTTCCEEECTTSCCCBC--TTSTTC-----CCCCEEEEEEEEEECC
T ss_pred ----HHccCCCCCEEECCCCcCcch--HHhccC-----CCCCEEeCCCCcccCC
Confidence 355668888888888888875 222222 6788888888877654
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.2e-14 Score=141.33 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=132.3
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHH
Q 007526 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (600)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 381 (600)
.++..++++++.+++.. .+..+++|++|++++|.+++.. .+ ...++|+.|++++|.+++ ++.
T Consensus 19 ~~l~~l~l~~~~i~~~~------~~~~l~~L~~L~l~~n~i~~l~------~l-~~l~~L~~L~L~~N~i~~-----~~~ 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQSLA------GM-QFFTNLKELHLSHNQISD-----LSP 80 (263)
T ss_dssp HHHHHHHHTCSCTTSEE------CHHHHTTCSEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCC-----CGG
T ss_pred HHHHHHHhcCCCccccc------chhhcCcCcEEECcCCCcccch------HH-hhCCCCCEEECCCCccCC-----Chh
Confidence 34556677888876543 1336789999999999988642 22 234589999999999988 333
Q ss_pred HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH
Q 007526 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461 (600)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 461 (600)
+..+++|++|++++|.+++. +. +.. ++|++|++++|.+++. ..+..+++|++|++++|+|++..
T Consensus 81 -l~~l~~L~~L~L~~N~l~~l-----~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~-- 144 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKNL-----NG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV-- 144 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSCC-----TT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG--
T ss_pred -hccCCCCCEEECCCCccCCc-----Cc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh--
Confidence 78899999999999998873 22 333 8899999999999874 23677799999999999998752
Q ss_pred HHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 462 ~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|.++..
T Consensus 145 ----~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 ----MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ----GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred ----HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence 457789999999999999887 3456679999999999988764
No 111
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.41 E-value=2.6e-13 Score=137.33 Aligned_cols=144 Identities=9% Similarity=0.073 Sum_probs=70.1
Q ss_pred CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC---CCChHHHHHHHHHhh--cCCCccEEEccCCCCChHHHH
Q 007526 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN---DIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGAS 433 (600)
Q Consensus 359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~ 433 (600)
++|++|++..|.++..++..+. ...+|+|++|+|+.+ ...+.++..+...+. .+++|++|++.+|.+++.+..
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 3566666666666665443332 125666777766421 111111111211121 245566666666655554444
Q ss_pred HHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCC
Q 007526 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (600)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 510 (600)
.++.. ..+++|++|+|+.|.+++.+...+...+..+++|+.|++++|.|++.+...+...+ ..++++++++
T Consensus 271 ~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 271 MFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred HHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 44332 12355555666555555555555554444455555555555555555555544431 2345555544
No 112
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.41 E-value=4.9e-13 Score=135.28 Aligned_cols=220 Identities=13% Similarity=0.174 Sum_probs=111.4
Q ss_pred CCccEEEccCCCCC-h---HHHHHHHHHHhhCCCcCEEEeecCCCChH-----HHHHHHHHHhcCCCccEEeecCCC-CC
Q 007526 218 IALKTLNLSGNPIG-D---EGVKCLCDILVDNAGVERLQLSSVDLRDE-----GAKAIAELLKNNSILRVLELNNNM-ID 287 (600)
Q Consensus 218 ~~L~~L~Ls~n~l~-~---~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~-----~~~~l~~~l~~~~~L~~L~L~~n~-i~ 287 (600)
..++.|.+...... + .....+...+.++++|+.|.+.+...... ....+...+..+++|+.|+|++|. +.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 45788888765443 1 23444554455567888888765432110 001133444555666666665541 11
Q ss_pred hhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCC--CC-CchHHHHHHHhhhcCCCcccEE
Q 007526 288 YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN--SI-GDEGIRALMSGLSSRKGKLAVL 364 (600)
Q Consensus 288 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l-~~~~~~~l~~~l~~~~~~L~~L 364 (600)
++. + ..++|++|++..|.++..++..+.. ..+|+|++|+|+.+ .. .+.++..
T Consensus 187 ------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~--------------- 241 (362)
T 2ra8_A 187 ------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNV--------------- 241 (362)
T ss_dssp ------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGG---------------
T ss_pred ------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHH---------------
Confidence 000 1 2445555555555555444433321 13455555554321 10 1111111
Q ss_pred ECcCCCCChhhHHHHHHHH--HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcC
Q 007526 365 DIGNNSISAKGAFHVAEYI--KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442 (600)
Q Consensus 365 ~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 442 (600)
+...+ ..+|+|++|+|.+|.+++.+...+..+ ..+++|++|+|+.|.+++.+...+...+..+
T Consensus 242 --------------l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 242 --------------FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp --------------TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred --------------HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 11111 135666666666666666544433332 2345666666666666666666665555555
Q ss_pred CCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcC
Q 007526 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (600)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 482 (600)
++|+.|+|++|.|++.++..+...+ ...+++++++
T Consensus 307 ~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 307 KHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp TTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred CcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 6677777776667666666665542 3446666655
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.2e-15 Score=162.41 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (600)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (600)
.|+.|++++|.|+. ++. +..+++|+.|++++|.|+. ++..+..+++|++|+|++|.|+.. . .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence 46677777776665 333 5556677777777776663 334455567777777777766642 1 34
Q ss_pred hhCCCccEEeccCcCCChhH-HHHHHHHHhhCCCccEEEccCCCCChH
Q 007526 468 KFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISILDLRANGLRDE 514 (600)
Q Consensus 468 ~~~~~L~~L~l~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 514 (600)
..+++|++|++++|.|++.. +.. +..+++|+.|+|++|.+++.
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~----l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQP----LVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGG----GGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCcEEECCCCCCCCCCCcHH----HhcCCCCCEEEecCCcCCCC
Confidence 55667777777777766553 322 34457777777777766653
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=7.1e-15 Score=150.11 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=80.1
Q ss_pred CEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHH-hCCCCcEEEccCCCCChHHHHHHHHHh
Q 007526 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADAL 411 (600)
Q Consensus 333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l 411 (600)
+.++++++.++. ++..+ ...++.|+|++|.++.. .+..+. .+++|++|+|++|.|+.. ....+
T Consensus 21 ~~l~c~~~~l~~-----iP~~~---~~~l~~L~Ls~N~l~~l----~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~ 84 (361)
T 2xot_A 21 NILSCSKQQLPN-----VPQSL---PSYTALLDLSHNNLSRL----RAEWTPTRLTNLHSLLLSHNHLNFI----SSEAF 84 (361)
T ss_dssp TEEECCSSCCSS-----CCSSC---CTTCSEEECCSSCCCEE----CTTSSSSCCTTCCEEECCSSCCCEE----CTTTT
T ss_pred CEEEeCCCCcCc-----cCccC---CCCCCEEECCCCCCCcc----ChhhhhhcccccCEEECCCCcCCcc----Chhhc
Confidence 466777666654 11111 12466777777766653 112233 566666666666666653 12234
Q ss_pred hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHH
Q 007526 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491 (600)
Q Consensus 412 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 491 (600)
..+++|++|+|++|+|+.... ..+..+++|++|+|++|.|+.... ..+..+++|++|++++|.|+......+
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred cCCCCCCEEECCCCcCCcCCH----HHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 555666666666666654321 223344666666666666554321 122344556666666665554433222
Q ss_pred HHHHhhCCCccEEEccCCCCChHHHH
Q 007526 492 ADMLRYNNTISILDLRANGLRDEGAK 517 (600)
Q Consensus 492 ~~~l~~~~~L~~L~Ls~n~i~~~~~~ 517 (600)
.. +..+++|+.|+|++|.|+.....
T Consensus 157 ~~-~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 157 KD-GNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp C-----CTTCCEEECCSSCCCCCCHH
T ss_pred cC-cccCCcCCEEECCCCCCCccCHH
Confidence 10 12235555555555555544333
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2.7e-14 Score=145.76 Aligned_cols=180 Identities=14% Similarity=0.051 Sum_probs=101.4
Q ss_pred cEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHH
Q 007526 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (600)
Q Consensus 305 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 384 (600)
+.++++++.++..+. . -.+.++.|+|++|.++...... +....++|+.|+|++|.|+.. .+..+.
T Consensus 21 ~~l~c~~~~l~~iP~-----~--~~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i----~~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-----S--LPSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFI----SSEAFV 85 (361)
T ss_dssp TEEECCSSCCSSCCS-----S--CCTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEEEeCCCCcCccCc-----c--CCCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCcc----Chhhcc
Confidence 566777766654331 1 1234677777777766532111 111334677777777777653 123456
Q ss_pred hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH
Q 007526 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (600)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (600)
.+++|++|+|++|.|+.. ....+..+++|++|+|++|.|+.... ..+..+++|++|+|++|.|+......+.
T Consensus 86 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp TCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred CCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 667777777777776653 12234556777777777777765322 2344457777777777766653322211
Q ss_pred HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCC--ccEEEccCCCCC
Q 007526 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT--ISILDLRANGLR 512 (600)
Q Consensus 465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~--L~~L~Ls~n~i~ 512 (600)
.+..+++|++|++++|.|+......+..+ +. ++.|+|++|.+.
T Consensus 158 -~~~~l~~L~~L~L~~N~l~~l~~~~~~~l----~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 -DGNKLPKLMLLDLSSNKLKKLPLTDLQKL----PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -----CTTCCEEECCSSCCCCCCHHHHHHS----CHHHHTTEECCSSCEE
T ss_pred -CcccCCcCCEEECCCCCCCccCHHHhhhc----cHhhcceEEecCCCcc
Confidence 11345677777777777776655544433 44 366777777665
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=6e-14 Score=133.40 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=28.7
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (600)
+|+.|++++|.++.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|++++|.|+.
T Consensus 41 ~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i----~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 41 NAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGAL----PVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCc----ChhhcccCCCcCEEECCCCcCCc
Confidence 455555555555542 123344455555555555555431 01123334455555555555443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=1.5e-14 Score=155.86 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=93.7
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.|+.|++++|.++. ++. +..+++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+.. + .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence 58888888888877 554 7788888999998888884 566777888899999999888862 2 46
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEc
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L 506 (600)
..+++|++|+|++|.|+... ....+..+++|++|++++|.+++... .+...+..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence 67788999999998887642 02345677889999999998866532 22334445688888875
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=2.9e-14 Score=134.70 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=75.3
Q ss_pred CEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhh
Q 007526 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412 (600)
Q Consensus 333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 412 (600)
+.++++++.++.. +..+ .+.++.|++++|.++.. .+..+..+++|++|+|++|.|+.. .+..+.
T Consensus 14 ~~v~c~~~~l~~i-----P~~l---~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-----PTNL---PETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQ 77 (220)
T ss_dssp TEEECTTSCCSSC-----CSSC---CTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEEEcCCCCcCcC-----CCcc---CcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhh
Confidence 4566666665541 1111 13566666666666652 112345566666666666666542 233445
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHH
Q 007526 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (600)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 492 (600)
.+++|++|+|++|.|+.... ..+..+++|++|+|++|.|+.... ..+..+++|++|++++|.|+......
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~-- 147 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQTIAKGT-- 147 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTT--
T ss_pred CCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCCEECHHH--
Confidence 55666666666666654211 123334556666666665544321 12233445555555555554443222
Q ss_pred HHHhhCCCccEEEccCCCC
Q 007526 493 DMLRYNNTISILDLRANGL 511 (600)
Q Consensus 493 ~~l~~~~~L~~L~Ls~n~i 511 (600)
+..+++|++|++++|.+
T Consensus 148 --~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 148 --FSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp --TTTCTTCCEEECCSSCE
T ss_pred --HhCCCCCCEEEeCCCCc
Confidence 22235555555555544
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=2.3e-12 Score=113.53 Aligned_cols=132 Identities=15% Similarity=0.190 Sum_probs=70.7
Q ss_pred CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
++|+.|++++|.+++.. ++..+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. ++..
T Consensus 17 ~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred ccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence 35666666666665110 333445566666777766666652 3455566666666666666653 2223
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (600)
+..+++|++|++++|.+++... ...+..+++|++|++++|.+++.... ....+..+++|++|+++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCCCcccccCC
Confidence 3334666666666666654311 12334556666666666666554321 11223344666666654
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=2.2e-13 Score=151.37 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCcCEEEeecCCCCh
Q 007526 246 AGVERLQLSSVDLRD 260 (600)
Q Consensus 246 ~~L~~L~Ls~~~l~~ 260 (600)
+.++.|+|.++.+..
T Consensus 173 ~~~~~l~L~~n~~~~ 187 (727)
T 4b8c_D 173 PLTPKIELFANGKDE 187 (727)
T ss_dssp ---------------
T ss_pred CccceEEeeCCCCCc
Confidence 567778887777665
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=6e-13 Score=119.87 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=69.2
Q ss_pred CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (600)
Q Consensus 359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (600)
++|+.|++++|.+++.. ++..+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. ++..
T Consensus 24 ~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHH
T ss_pred ccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHH
Confidence 35666666666555110 333345556666666666666542 3344556666666666666542 1222
Q ss_pred hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
+..+++|++|++++|.|++.... ..+..+++|++|++++|.++.... .....+..+++|++|++++|.+.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChh
Confidence 33346666666666665542110 223445566666666665544322 11123344466666666655544
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=5.5e-14 Score=132.76 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=71.7
Q ss_pred CEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhh
Q 007526 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412 (600)
Q Consensus 333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 412 (600)
+.+++++|.++. +...+ ...++.|++++|.++.... ...+..+++|++|+|++|.|+.. ....+.
T Consensus 14 ~~l~~s~n~l~~-----iP~~~---~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSNQKLNK-----IPEHI---PQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDI----EEGAFE 78 (220)
T ss_dssp TEEECCSSCCSS-----CCSCC---CTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEeEeCCCCccc-----CccCC---CCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEE----CHHHhC
Confidence 466666666554 11111 1245666666666655200 01245556666666666665542 112344
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHH
Q 007526 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (600)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 492 (600)
.+++|++|++++|.++.... ..+..+++|++|+|++|.|+.... ..+..+++|++|++++|.|+...+..
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~-- 148 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDNQITTVAPGA-- 148 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTSCCCCBCTTT--
T ss_pred CCCCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCCcCCEECHHH--
Confidence 45556666666665554321 223344555555555555543311 11233445555555555554443222
Q ss_pred HHHhhCCCccEEEccCCCCC
Q 007526 493 DMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 493 ~~l~~~~~L~~L~Ls~n~i~ 512 (600)
+..+++|++|++++|.+.
T Consensus 149 --~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 --FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp --TTTCTTCCEEECCSCCEE
T ss_pred --hcCCCCCCEEEecCcCCc
Confidence 222345555555555443
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=6e-14 Score=131.35 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=80.7
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
+|++|++++|.++.. .+..+..+++|++|++++|.++.. ....+..+++|++|++++|.++.... ..+
T Consensus 29 ~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~ 96 (208)
T 2o6s_A 29 QTTYLDLETNSLKSL----PNGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQSLPN----GVF 96 (208)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred CCcEEEcCCCccCcC----ChhhhcccccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCcCCccCH----hHh
Confidence 456666666655542 112244556666666666665542 11223445666666666666654211 223
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|++++|.|+.... ..+..+++|++|++++|.+++..... +..+++|++|++++|.+...
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~~~----- 163 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPD----GVFDKLTQLKDLRLYQNQLKSVPDGV----FDRLTSLQYIWLHDNPWDCT----- 163 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSCCBCCC-----
T ss_pred cCccCCCEEEcCCCcCcccCH----hHhccCCcCCEEECCCCccceeCHHH----hccCCCccEEEecCCCeecC-----
Confidence 444666666666666654321 12244556666666666665543322 33446677777776655531
Q ss_pred HHHHhhcCccccEEEccCCCCChhHH
Q 007526 520 AQSFKVVNEALTSIDLAFNEIRDDGA 545 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~~~~~ 545 (600)
. +.|+.|+++.|++++..+
T Consensus 164 --~-----~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 164 --C-----PGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp --T-----TTTHHHHHHHHHCTTTBB
T ss_pred --C-----CCHHHHHHHHHhCCceee
Confidence 0 345556666665555443
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2.3e-13 Score=129.28 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=92.9
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
..+.++.+++.++. ++.. -.++|++|+|++|.+... .+..+..+++|++|++++|.|+.... ..+
T Consensus 20 s~~~v~c~~~~l~~-----ip~~--~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~ 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-----VPAG--IPTNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALPV----GVF 84 (229)
T ss_dssp ETTEEECTTSCCSS-----CCSC--CCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred eCCEeEccCCCcCc-----cCCC--CCCCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcCh----hhc
Confidence 45566666666555 3321 125677777777766653 23345556677777777777654321 223
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|+|++|.|+.... ..+..+++|++|++++|.|+... ..+..+++|++|+|++|.|+......+
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~lp-----~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKELFMCCNKLTELP-----RGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCSCC-----TTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred ccCCCcCEEECCCCcCCccCh----hHhCcchhhCeEeccCCcccccC-----cccccCCCCCEEECCCCcCCccCHHHH
Confidence 445677777777776654321 12245567777777777766432 223455777777777777665433222
Q ss_pred HHHHhhcCccccEEEccCCCCChh--HHHHHHHHHH
Q 007526 520 AQSFKVVNEALTSIDLAFNEIRDD--GAFAIAQALK 553 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~~~--~~~~l~~~~~ 553 (600)
... ++|++|++++|.+... ....+..+..
T Consensus 156 ~~l-----~~L~~L~l~~N~~~c~c~~~~~l~~~~~ 186 (229)
T 3e6j_A 156 DRL-----SSLTHAYLFGNPWDCECRDIMYLRNWVA 186 (229)
T ss_dssp TTC-----TTCCEEECTTSCBCTTBGGGHHHHHHHH
T ss_pred hCC-----CCCCEEEeeCCCccCCcchhHHHHHHHH
Confidence 222 5677777777776643 2334444444
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=3e-14 Score=134.56 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=119.7
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.-+.++++++.++. ++..+ .+++++|++++|.|+.. ....+..+++|++|++++|.|+... +..+
T Consensus 12 ~~~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~~ 76 (220)
T 2v9t_B 12 SNNIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISELA----PDAF 76 (220)
T ss_dssp ETTEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEEC----TTTT
T ss_pred CCCEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCcC----HHHh
Confidence 45688999988887 44322 26899999999998873 2235667889999999999998743 3445
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|+|++|.|+.... ..+..+++|++|++++|.|+...+.. +..+++|++|+|++|.|+......+
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred hCCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECHHHH
Confidence 666999999999998875432 22356789999999999988775544 4455899999999998887654434
Q ss_pred HHHHhhcCccccEEEccCCCCCh-hHHHHHHHHHH
Q 007526 520 AQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALK 553 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~~-~~~~~l~~~~~ 553 (600)
... ++|++|++++|++.. -....+...+.
T Consensus 149 ~~l-----~~L~~L~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 149 SPL-----RAIQTMHLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp TTC-----TTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred hCC-----CCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence 333 679999999998753 33344444444
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=3.1e-13 Score=127.51 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=95.5
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.-+.+++++|.++. ++..+ .+.+++|++++|.++.... ...+..+++|++|++++|.|+.... ..+
T Consensus 12 ~~~~l~~s~n~l~~-----iP~~~--~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i~~----~~~ 77 (220)
T 2v70_A 12 EGTTVDCSNQKLNK-----IPEHI--PQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDIEE----GAF 77 (220)
T ss_dssp ETTEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEECT----TTT
T ss_pred CCCEeEeCCCCccc-----CccCC--CCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEECH----HHh
Confidence 34577777777765 43221 2356777777777765210 1124556777777777777765422 234
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|+|++|.|+.... ..+..+++|++|++++|.|+...+..+ ..+++|++|+|++|.|+...+..+
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNRITCVGNDSF----IGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSCCCCBCTTSS----TTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CCCCCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCcCCeECHhHc----CCCccCCEEECCCCcCCEECHHHh
Confidence 455777777777777765422 223556777777777777776544333 344777777777777776544434
Q ss_pred HHHHhhcCccccEEEccCCCCC
Q 007526 520 AQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
... ++|++|++++|.+.
T Consensus 150 ~~l-----~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTL-----HSLSTLNLLANPFN 166 (220)
T ss_dssp TTC-----TTCCEEECCSCCEE
T ss_pred cCC-----CCCCEEEecCcCCc
Confidence 333 66777777777765
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=1.7e-12 Score=114.37 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=75.9
Q ss_pred CCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHH
Q 007526 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 466 (600)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (600)
++|++|++++|.+++.. ++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+++. +...
T Consensus 17 ~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred ccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence 56777777777776210 333445567777777777777653 3455557777777777776653 2233
Q ss_pred HhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEcc
Q 007526 467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLA 536 (600)
Q Consensus 467 l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~---~~l~~~l~~~n~~L~~L~ls 536 (600)
+..+++|++|++++|.+++... ...+..+++|++|++++|.+++... ..+... ++|++||++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-----PQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-----TTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-----CCcccccCC
Confidence 3445677777777777665421 1234455677777777776665433 223322 566666664
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=6.8e-13 Score=119.53 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=85.9
Q ss_pred CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (600)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (600)
.++|++|++++|.+++.. ++..+..+++|++|++++|.++.. ..+..+++|++|++++|.++.. +..
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHH
Confidence 467888888888776211 334455667788888888877763 3455667788888888877653 223
Q ss_pred HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEccCCCCC
Q 007526 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 466 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~---~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
.+..+++|++|++++|.+++.... ..+..+++|++|++++|.+++... ..+... ++|++|++++|.+.
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-----PQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-----SSCCEETTEETTSC
T ss_pred HHhhCCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-----ccCcEecCCCCChh
Confidence 334567777888887777664321 234455777777777777765433 122222 66777777777665
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=5.3e-13 Score=148.36 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=92.7
Q ss_pred HHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChh
Q 007526 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 289 (600)
Q Consensus 210 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 289 (600)
....+..++.|+.|+|++|.+.. ++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.|+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~-- 283 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLT-- 283 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCS--
T ss_pred ChhhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCC--
Confidence 34455667788888888888764 33444567888888888888874 3444566688888888888885
Q ss_pred hHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC
Q 007526 290 GFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369 (600)
Q Consensus 290 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 369 (600)
.++..+..+++|++|+|++|.++..+ ..+..+++|+.|+|++|.+++.....+...-. .+..|++++|
T Consensus 284 ---~lp~~~~~l~~L~~L~L~~N~l~~lp-----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N 351 (727)
T 4b8c_D 284 ---SLPAELGSCFQLKYFYFFDNMVTTLP-----WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----TGLIFYLRDN 351 (727)
T ss_dssp ---SCCSSGGGGTTCSEEECCSSCCCCCC-----SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH----HHHHHHHHHC
T ss_pred ---ccChhhcCCCCCCEEECCCCCCCccC-----hhhhcCCCccEEeCCCCccCCCChHHHhhcch----hhhHHhhccC
Confidence 34556677888888888888876433 34667888888888888887653333321100 2233556666
Q ss_pred CCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526 370 SISAKGAFHVAEYIKNCKSLLWINLYMN 397 (600)
Q Consensus 370 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (600)
.++.. ....|+.|+++.|
T Consensus 352 ~l~~~----------~p~~l~~l~l~~n 369 (727)
T 4b8c_D 352 RPEIP----------LPHERRFIEINTD 369 (727)
T ss_dssp CCCCC----------CCCC---------
T ss_pred cccCc----------CccccceeEeecc
Confidence 65542 1234556666555
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=4.3e-13 Score=124.41 Aligned_cols=16 Identities=19% Similarity=0.190 Sum_probs=7.0
Q ss_pred CCCCcEEEccCCCCCh
Q 007526 386 CKSLLWINLYMNDIGD 401 (600)
Q Consensus 386 ~~~L~~L~Ls~n~l~~ 401 (600)
+++|++|++++|.+++
T Consensus 92 ~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHCSEEEEEEEECCC
T ss_pred CCcCCEEECcCCcCCc
Confidence 3344444444444443
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=4.4e-13 Score=125.42 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=112.8
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.-+.++.+++.++. ++. ...++|++|++++|.+++. ....+..+++|++|++++|.++... ...+
T Consensus 8 ~~~~v~c~~~~l~~-----~p~--~~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~ 72 (208)
T 2o6s_A 8 SGTTVECYSQGRTS-----VPT--GIPAQTTYLDLETNSLKSL----PNGVFDELTSLTQLYLGGNKLQSLP----NGVF 72 (208)
T ss_dssp ETTEEECCSSCCSS-----CCS--CCCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCC----TTTT
T ss_pred CCCEEEecCCCccC-----CCC--CCCCCCcEEEcCCCccCcC----ChhhhcccccCcEEECCCCccCccC----hhhc
Confidence 45677777777766 332 2246899999999998863 2234567899999999999988642 2334
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 519 (600)
..+++|++|++++|.++.... ..+..+++|++|++++|.++...... +..+++|++|++++|.+++.....+
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPN----GVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCCCcCEEECCCCcCCccCH----hHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHh
Confidence 567999999999998875422 22456789999999999988764433 4456899999999998887544333
Q ss_pred HHHHhhcCccccEEEccCCCCCh
Q 007526 520 AQSFKVVNEALTSIDLAFNEIRD 542 (600)
Q Consensus 520 ~~~l~~~n~~L~~L~ls~n~i~~ 542 (600)
... ++|++|++++|.+..
T Consensus 145 ~~l-----~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 145 DRL-----TSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTC-----TTCCEEECCSCCBCC
T ss_pred ccC-----CCccEEEecCCCeec
Confidence 332 789999999998875
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=5.6e-13 Score=123.62 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=50.2
Q ss_pred HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH
Q 007526 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461 (600)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 461 (600)
.+..+++|++|++++|.+++ ++ .+..+++|++|++++|.++.. +..+..+++|++|++++|.+++..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l-----~~~~~~~~~L~~L~L~~N~l~~l~-- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKI-----ENLDAVADTLEELWISYNQIASLS-- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSC-----SSHHHHHHHCSEEEEEEEECCCHH--
T ss_pred HHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccc-----cchhhcCCcCCEEECcCCcCCcCC--
Confidence 44445555555555554443 11 233334555555555544421 111122245555555555554421
Q ss_pred HHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 462 ~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
. +..+++|++|++++|.+++.+.. ..+..+++|++|++++|.+++
T Consensus 110 ~----~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 110 G----IEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp H----HHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSCHHHH
T ss_pred c----cccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecCCcccc
Confidence 1 22334555555555555543221 123334555555555555544
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=5.1e-12 Score=114.70 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=50.0
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (600)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (600)
+|++|++++|.+++. ..+..+++|++|++++|.++..... .+..+++|++|++++|.|++... + ..+
T Consensus 43 ~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~--~-~~l 109 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGD--L-DPL 109 (176)
T ss_dssp CCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCCCGGG--G-GGG
T ss_pred CCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCCcchh--h-Hhh
Confidence 455555555554441 2333445555555555555432111 11223555555555555543211 0 123
Q ss_pred hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (600)
Q Consensus 468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 513 (600)
..+++|++|++++|.++..... ....+..+++|+.||+++|.+.+
T Consensus 110 ~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCHHH
T ss_pred hcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCHHH
Confidence 3445555555555555433211 11223344566666665555443
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=6.9e-14 Score=142.15 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=49.0
Q ss_pred cEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHH-HHHh
Q 007526 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLK 271 (600)
Q Consensus 193 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~ 271 (600)
++++.++++++.. +..+ .+++++|+|++|+|+... .+.+..+++|++|+|++|++... +. ..+.
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~i~----~~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRVIQ----KGAFSGFGDLEKIEISQNDVLEV----IEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSEEC----TTSSTTCTTCCEEEEECCTTCCE----ECTTSBC
T ss_pred CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCCcC----HHHHcCCCCCCEEECcCCCCCCc----cChhHhh
Confidence 4566666665521 1111 135667777776665421 12234456666666666665321 10 1122
Q ss_pred cCCCccE-EeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 272 NNSILRV-LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (600)
Q Consensus 272 ~~~~L~~-L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 315 (600)
+++++.+ +.+.+|+++... +..+..+++|++|++++|.++
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~----~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYIN----PEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp SCTTCCEEEEEEETTCCEEC----TTSBCCCTTCCEEEEEEECCS
T ss_pred cchhhhhhhcccCCcccccC----chhhhhccccccccccccccc
Confidence 3344443 444455553211 223334555666666655554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=1.3e-11 Score=111.93 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=50.0
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
+|++|++++|.++. + ..+..+++|++|++++|.++... ...+..+++|++|++++|.++.... ...+
T Consensus 43 ~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~~~---~~~l 109 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIG----EGLDQALPDLTELILTNNSLVELGD---LDPL 109 (176)
T ss_dssp CCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEEC----SCHHHHCTTCCEEECCSCCCCCGGG---GGGG
T ss_pred CCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccC----cchhhcCCCCCEEECCCCcCCcchh---hHhh
Confidence 45555555554444 1 22344455555555555554320 0112334555555555555543211 0123
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCC
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 483 (600)
..+++|++|++++|+++..... -...+..+++|++|++++|.+
T Consensus 110 ~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCH
Confidence 4445566666666655432111 112234555666666666654
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.10 E-value=3.8e-14 Score=144.09 Aligned_cols=238 Identities=13% Similarity=0.035 Sum_probs=138.4
Q ss_pred CEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHH-HHHhhCCCccEEEccCCCCCh-HHHHHHHHHh
Q 007526 249 ERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLA-EALLENSTIRSLHLNGNYGGA-LGANALAKGL 326 (600)
Q Consensus 249 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l 326 (600)
+.++.++++++.. +..+ .+++++|+|++|+|+. ++ .+|..+++|++|+|++|.+.. .+. .++
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f 75 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEA----DVF 75 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECT----TSB
T ss_pred CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccCh----hHh
Confidence 5677888887762 2222 2578899999998853 22 245678888888888887633 221 234
Q ss_pred hcCCCCCE-EEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccC-CCCChHHH
Q 007526 327 EGNKSLRE-LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGA 404 (600)
Q Consensus 327 ~~~~~L~~-L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~ 404 (600)
.+++++.+ +.+++|++...... .....++|++|++++|.+.... ...+....++..|++.+ +.+....
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~-----~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l~~~~~i~~l~- 145 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPE-----AFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDIQDNINIHTIE- 145 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTT-----SBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEEESCTTCCEEC-
T ss_pred hcchhhhhhhcccCCcccccCch-----hhhhccccccccccccccccCC----chhhcccchhhhhhhcccccccccc-
Confidence 56667665 55566777653111 1134457888888888776521 11122344667777755 3555421
Q ss_pred HHHHHHhhcC-CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC-CCCChhHHHHHHHHHhhCCCccEEeccCcC
Q 007526 405 EKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (600)
Q Consensus 405 ~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 482 (600)
...+..+ ..++.|++++|.|+... .......+|++|++++ |.++.... ..+..+++|++|++++|+
T Consensus 146 ---~~~f~~~~~~l~~L~L~~N~i~~i~-----~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 146 ---RNSFVGLSFESVILWLNKNGIQEIH-----NSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTR 213 (350)
T ss_dssp ---TTSSTTSBSSCEEEECCSSCCCEEC-----TTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSC
T ss_pred ---ccchhhcchhhhhhccccccccCCC-----hhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCC
Confidence 1122222 35778888888887532 2222336788888864 55554322 223556788888888888
Q ss_pred CChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526 483 IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (600)
Q Consensus 483 i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~L~~L~ls~n 538 (600)
|+...... ..+|+.|.+.++ .++... .+... ++|+.+++.++
T Consensus 214 l~~lp~~~-------~~~L~~L~~l~~~~l~~lP--~l~~l-----~~L~~l~l~~~ 256 (350)
T 4ay9_X 214 IHSLPSYG-------LENLKKLRARSTYNLKKLP--TLEKL-----VALMEASLTYP 256 (350)
T ss_dssp CCCCCSSS-------CTTCCEEECTTCTTCCCCC--CTTTC-----CSCCEEECSCH
T ss_pred cCccChhh-------hccchHhhhccCCCcCcCC--CchhC-----cChhhCcCCCC
Confidence 87664322 255666665554 343321 12221 67888887654
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=7.1e-12 Score=126.04 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=51.9
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCcc-EEeccCcCCChhHHHHHH
Q 007526 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN-TLKLGWCQIGASGAEFVA 492 (600)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~ 492 (600)
+++|++|++++|.++..+. .++..|++|++|+|.+| +...+. .++..|.+|+ .+++.+ .++..+..+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n-i~~I~~----~aF~~~~~L~~~l~l~~-~l~~I~~~a-- 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN-LKTIGQ----RVFSNCGRLAGTLELPA-SVTAIEFGA-- 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEEECT-TCCEECTTT--
T ss_pred cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc-cceehH----HHhhCChhccEEEEEcc-cceEEchhh--
Confidence 4556666665555554322 23444556666666555 333222 2234455666 666655 444443322
Q ss_pred HHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE
Q 007526 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534 (600)
Q Consensus 493 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ 534 (600)
+..|++|+.|++++|.++..+...|..+ ++|++++
T Consensus 293 --F~~c~~L~~l~l~~n~i~~I~~~aF~~~-----~~L~~ly 327 (329)
T 3sb4_A 293 --FMGCDNLRYVLATGDKITTLGDELFGNG-----VPSKLIY 327 (329)
T ss_dssp --TTTCTTEEEEEECSSCCCEECTTTTCTT-----CCCCEEE
T ss_pred --hhCCccCCEEEeCCCccCccchhhhcCC-----cchhhhc
Confidence 3344666666666666665554444443 4566554
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=2.2e-12 Score=129.74 Aligned_cols=279 Identities=14% Similarity=0.118 Sum_probs=146.3
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC--hHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH
Q 007526 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR--DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (600)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 296 (600)
++++|.++++ +.......+... +++|+.|+|++|++. .... ...+.+..+.+..+.|.+ .
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~---l~~L~~LdLs~n~i~~~~~~~-------~~~~~~~~~~~~~~~I~~-------~ 87 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDE---FPSLKVLDISNAEIKMYSGKA-------GTYPNGKFYIYMANFVPA-------Y 87 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHS---CTTCCEEEEEEEEECCEEESS-------SSSGGGCCEEECTTEECT-------T
T ss_pred ceeEEEEecc-ccHHHHHHHHHh---hccCeEEecCcceeEEecCcc-------ccccccccccccccccCH-------H
Confidence 4888888865 444433333321 578888888888776 2100 011223445555555543 2
Q ss_pred HHhh--------CCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcC
Q 007526 297 ALLE--------NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (600)
Q Consensus 297 ~l~~--------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (600)
++.. +++|++|++.+ .++..+. .+|..|++|+.|++..|.+...+...+ ....++..+.+..
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i~~~aF-----~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNLLPEAL-----ADSVTAIFIPLGS 157 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEECTTSS-----CTTTCEEEECTTC
T ss_pred HhcccccccccccCCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCccccchhhh-----cCCCceEEecCcc
Confidence 3445 78888888887 6665544 346678888888888887654322111 1222455555443
Q ss_pred CCCChhhHHHH-HHHHHhCCCCc-EEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcC
Q 007526 369 NSISAKGAFHV-AEYIKNCKSLL-WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT 446 (600)
Q Consensus 369 n~i~~~~~~~l-~~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 446 (600)
..... +...+ ...+..+..|+ .+.+....--. ..+...-....++..+.+.++ +.......+. ..|++|+
T Consensus 158 ~~~~~-~~~~i~~~~f~~~~~L~~~i~~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L~ 229 (329)
T 3sb4_A 158 SDAYR-FKNRWEHFAFIEGEPLETTIQVGAMGKLE---DEIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNLV 229 (329)
T ss_dssp THHHH-TSTTTTTSCEEESCCCEEEEEECTTCCHH---HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTCC
T ss_pred hhhhh-ccccccccccccccccceeEEecCCCcHH---HHHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCCe
Confidence 21000 00000 01123455555 44443321101 011111112355667776654 3333333332 2367777
Q ss_pred EEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCcc-EEEccCCCCChHHHHHHHHHHhh
Q 007526 447 SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS-ILDLRANGLRDEGAKCLAQSFKV 525 (600)
Q Consensus 447 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~ 525 (600)
+++|++|.++..+.. ++..|.+|+.|++.+| +...+..+ +..|++|+ .+++.+ .++..+..+|..+
T Consensus 230 ~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~~~aF~~c--- 296 (329)
T 3sb4_A 230 SLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIEFGAFMGC--- 296 (329)
T ss_dssp EEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEECTTTTTTC---
T ss_pred EEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEchhhhhCC---
Confidence 777777766654332 2356677777777776 55554433 34457777 777776 5555544445443
Q ss_pred cCccccEEEccCCCCChhHHHHH
Q 007526 526 VNEALTSIDLAFNEIRDDGAFAI 548 (600)
Q Consensus 526 ~n~~L~~L~ls~n~i~~~~~~~l 548 (600)
.+|++|++++|+++..+...+
T Consensus 297 --~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 297 --DNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp --TTEEEEEECSSCCCEECTTTT
T ss_pred --ccCCEEEeCCCccCccchhhh
Confidence 567777777777765554443
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=1.1e-11 Score=114.25 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=40.6
Q ss_pred hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHH
Q 007526 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491 (600)
Q Consensus 412 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 491 (600)
..+++|++|++++|.|+... +..+..+++|++|+|++|.|+.... ..+..+++|++|++++|+|+...+..
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~- 121 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMPGS- 121 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECTTS-
T ss_pred ccCCCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCeeCHHH-
Confidence 33445555555555544321 1223333555555555555443321 11233445555555555555443222
Q ss_pred HHHHhhCCCccEEEccCCCCC
Q 007526 492 ADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 492 ~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
+..+++|++|++++|.++
T Consensus 122 ---~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 122 ---FEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ---STTCTTCCEEECTTCCBC
T ss_pred ---hhcCCCCCEEEeCCCCcc
Confidence 223355666666666554
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=1.5e-11 Score=113.35 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=88.8
Q ss_pred cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh
Q 007526 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469 (600)
Q Consensus 390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 469 (600)
+.+++++|.++. ++..+ ..+|++|++++|.|+..... ..+..+++|++|+|++|.|+.... ..+..
T Consensus 11 ~~l~~s~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEP----NAFEG 76 (192)
T ss_dssp TEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCT----TTTTT
T ss_pred CEEEcCCCCcCc-----CccCC--CCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCH----hHcCC
Confidence 456666665544 22222 23677777777777653211 124556899999999998876422 33456
Q ss_pred CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (600)
Q Consensus 470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~ 543 (600)
+++|++|++++|.|+...... +..+++|++|+|++|.|+...+..+... ++|++|++++|.+...
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFEHL-----NSLTSLNLASNPFNCN 141 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSSTTC-----TTCCEEECTTCCBCCS
T ss_pred cccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhhcC-----CCCCEEEeCCCCccCc
Confidence 789999999999998775543 3445899999999999887544444333 6799999999988753
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=2.1e-11 Score=112.28 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=16.5
Q ss_pred CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (600)
Q Consensus 470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 511 (600)
+++|++|++++|.|+...... +..+++|+.|++++|.+
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 101 LKSLRLLSLHGNDISVVPEGA----FNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCCCCeeChhh----hhcCccccEEEeCCCCe
Confidence 344444444444444332221 22235555555555544
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=3.2e-11 Score=111.07 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=75.6
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHH
Q 007526 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (600)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 494 (600)
++|++|++++|.|+. ++..+..+++|++|+|++|.|+.... ..+..+++|++|++++|.|+...+..
T Consensus 31 ~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~l~~i~~~~---- 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNRLRCIPPRT---- 97 (193)
T ss_dssp TTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTT----
T ss_pred CCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCCccCEeCHHH----
Confidence 356666666666553 22334555666777776666654322 22345667777788877777665443
Q ss_pred HhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC-hhHHHHHHHHHH
Q 007526 495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQALK 553 (600)
Q Consensus 495 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~-~~~~~~l~~~~~ 553 (600)
+..+++|++|+|++|.|+......+... ++|++|++++|.+. +-....+..+..
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDL-----SALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTC-----TTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcC-----ccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 3445899999999999887544333333 77999999999875 333344555444
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.91 E-value=1.2e-09 Score=97.10 Aligned_cols=93 Identities=16% Similarity=0.201 Sum_probs=51.0
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHH
Q 007526 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVA 492 (600)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~ 492 (600)
..|++||+++|.|++.+...+ ..|++|++|+|++| .|+|.+...+...-..+++|++|++++| .|++.+...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 356666666666666655432 34566666666666 3666666555432111234666666665 36665554432
Q ss_pred HHHhhCCCccEEEccCC-CCChHH
Q 007526 493 DMLRYNNTISILDLRAN-GLRDEG 515 (600)
Q Consensus 493 ~~l~~~~~L~~L~Ls~n-~i~~~~ 515 (600)
++++|++|++++| .|++.+
T Consensus 137 ----~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 ----HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ----GCTTCCEEEEESCTTCCCHH
T ss_pred ----cCCCCCEEECCCCCCCCchH
Confidence 3466666666665 455544
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=8.5e-11 Score=106.65 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=63.4
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
..+.++++++.++. ++. ...++|++|++++|.++.. ....+..+++|++|++++|.++.... ..+
T Consensus 8 ~~~~l~~~~~~l~~-----~p~--~~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~ 72 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS-----VPT--GIPSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPD----GVF 72 (177)
T ss_dssp ETTEEECCSSCCSS-----CCT--TCCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCT----TTT
T ss_pred CCCEEEecCCCCcc-----CCC--CCCCCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeCh----hHc
Confidence 45667777776665 331 1235677777777766542 11223445666666666666654211 123
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
..+++|++|++++|.|+.... ..+..+++|++|++++|.++...... +..+++|++|++++|.+.
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPN----GVFDKLTQLKELALDTNQLKSVPDGI----FDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBC
T ss_pred cCCCccCEEECCCCCccccCH----HHhhCCcccCEEECcCCcceEeCHHH----hcCCcccCEEEecCCCee
Confidence 344556666666665543211 11233445555555555544332211 222344445555444444
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.88 E-value=7.2e-10 Score=98.52 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=45.1
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHH
Q 007526 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSE 465 (600)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 465 (600)
.|++||+++|.|++.|+.. +..+++|++|+|++| .|++.++..+...-..+++|++|+|++| .|+|.|+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-- 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-- 135 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--
T ss_pred eEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--
Confidence 4555555555555554433 234555555555555 3555555544431001234555555555 3555555443
Q ss_pred HHhhCCCccEEeccCc-CCChh
Q 007526 466 VLKFHGNINTLKLGWC-QIGAS 486 (600)
Q Consensus 466 ~l~~~~~L~~L~l~~n-~i~~~ 486 (600)
..+++|++|++++| .|++.
T Consensus 136 --~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 136 --HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp --GGCTTCCEEEEESCTTCCCH
T ss_pred --hcCCCCCEEECCCCCCCCch
Confidence 23455555555555 34443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.87 E-value=7.4e-11 Score=107.05 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=36.6
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHH
Q 007526 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (600)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 494 (600)
++|++|++++|.++.... ..+..+++|++|++++|.++.... ..+..+++|++|++++|.++......
T Consensus 28 ~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~---- 95 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSQNQIQSLPD----GVFDKLTKLTILYLHENKLQSLPNGV---- 95 (177)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----
T ss_pred CCCcEEEeCCCcccEeCH----HHhcCcccccEEECCCCcceEeCh----hHccCCCccCEEECCCCCccccCHHH----
Confidence 345555555554443211 122333455555555554443211 11233445555555555544432221
Q ss_pred HhhCCCccEEEccCCCCCh
Q 007526 495 LRYNNTISILDLRANGLRD 513 (600)
Q Consensus 495 l~~~~~L~~L~Ls~n~i~~ 513 (600)
+..+++|++|++++|.++.
T Consensus 96 ~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp TTTCTTCCEEECCSSCCSC
T ss_pred hhCCcccCEEECcCCcceE
Confidence 2223455555555554443
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=3e-09 Score=95.60 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=16.6
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCC
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (600)
.|+.|++++|.|+.. .+..+..+++|++|+|++|+|+
T Consensus 31 ~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 31 TTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCC
T ss_pred CCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcC
Confidence 445555555544442 1223344444444444444444
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=4.8e-09 Score=94.25 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
..+.+++++|.++. ++..+ .++|++|+|++|.|+.. .+..+..+++|++|++++|+|+.... ..+
T Consensus 10 ~~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLTVLPA----GVF 74 (170)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCT----TTT
T ss_pred CCCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcCccCh----hhc
Confidence 34555555555554 33211 24566666666665542 12334455666666666666654321 223
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh--HHHHHHHHHhhCCC
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS--GAEFVADMLRYNNT 500 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~~~ 500 (600)
..+++|++|+|++|+|+.... ..+..+++|++|++++|.+... ....+...+...+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~ 133 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG 133 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred cCCCCCCEEECCCCccCEeCH----HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence 344666666666665554321 1234455666666666655433 23334444443333
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.56 E-value=6.1e-09 Score=93.94 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=47.7
Q ss_pred cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh
Q 007526 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469 (600)
Q Consensus 390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 469 (600)
+.+++++|.++. ++..+ .++|++|++++|.|+... +..+..+++|++|+|++|+|+.... ..+..
T Consensus 15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLE----PGVFDHLVNLQQLYFNSNKLTAIPT----GVFDK 79 (174)
T ss_dssp SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTT
T ss_pred cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccC----HHHhcCCcCCCEEECCCCCCCccCh----hHhCC
Confidence 556666666654 22222 255666666666665431 1223344556666666555543211 11233
Q ss_pred CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
+++|++|++++|+|+...... +..+++|++|+|++|.+.
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGA----FDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCBC
T ss_pred cchhhEEECCCCccceeCHHH----hccccCCCEEEeCCCCcc
Confidence 445555555555544332211 222344444444444443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=1.2e-08 Score=91.87 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=45.0
Q ss_pred cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
.|+.|++++|.++.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|+|+.... ..+
T Consensus 34 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~ 101 (174)
T 2r9u_A 34 DKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTAI----PTGVFDKLTQLTQLDLNDNHLKSIPR----GAF 101 (174)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred CCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCcc----ChhHhCCcchhhEEECCCCccceeCH----HHh
Confidence 566666666666552 233455566666666666666542 11123445666666666666554211 123
Q ss_pred hcCCCcCEEECcCCCCC
Q 007526 440 KDNSVITSLDLAYNPIG 456 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~ 456 (600)
..+++|++|+|++|++.
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 34456666666666554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.11 E-value=1.8e-08 Score=103.59 Aligned_cols=272 Identities=14% Similarity=0.136 Sum_probs=170.4
Q ss_pred CCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHH
Q 007526 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (600)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 324 (600)
+..++.+.+-+. ++..+..+| .+ .+|+.+++..+ ++.-+- .++.. .+|+.+.+.. .++..+. .
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF----~~-~~L~~i~l~~~-i~~I~~----~aF~~-~~L~~i~lp~-~l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAF----RN-SQIAKVVLNEG-LKSIGD----MAFFN-STVQEIVFPS-TLEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTT----TT-CCCSEEECCTT-CCEECT----TTTTT-CCCCEEECCT-TCCEECS----S
T ss_pred cCCccEEEECCc-cCEehHhhc----cc-CCccEEEeCCC-ccEECH----HhcCC-CCceEEEeCC-CccEehH----H
Confidence 466777777643 333322222 33 36999999876 432211 12333 5799999986 4544443 3
Q ss_pred HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHH
Q 007526 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (600)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (600)
+|..|++|+.+++..|+++..+...+ . ..+|+.+.+..+ +...+. ..+.+|++|+.+++..+ +...+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF-----~-~~~L~~l~lp~~-l~~I~~----~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTF-----V-YAGIEEVLLPVT-LKEIGS----QAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTT-----T-TCCCSEEECCTT-CCEECT----TTTTTCTTCCCEECCTT-CCEECT
T ss_pred HhhCcccCCeeecCCCcceEechhhE-----e-ecccCEEEeCCc-hheehh----hHhhCCCCCCEEecCCC-ccCccc
Confidence 56789999999999998875432222 2 248999999865 554211 34678999999999875 333211
Q ss_pred HHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH-HHHHHhhCCCccEEeccCcCC
Q 007526 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA-LSEVLKFHGNINTLKLGWCQI 483 (600)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~L~~L~l~~n~i 483 (600)
.++.. .+|+.+.+.. .++..+. .++..|++|+.+++.+|.+....... -..++..|++|+.+++.+ .+
T Consensus 243 ----~aF~~-~~L~~i~lp~-~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 243 ----EAFRE-SGITTVKLPN-GVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp ----TTTTT-CCCSEEEEET-TCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred ----ccccc-CCccEEEeCC-CccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 23333 7899999954 4544322 45677899999999988654111000 113457789999999994 46
Q ss_pred ChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEE
Q 007526 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563 (600)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L 563 (600)
...+..+ +..|++|+.++|..+ ++..+..+|.. ++|+++++.+|.+.......+ ..++. .++.|
T Consensus 312 ~~I~~~a----F~~c~~L~~l~lp~~-l~~I~~~aF~~------~~L~~l~l~~n~~~~l~~~~F----~~~~~-~l~~l 375 (401)
T 4fdw_A 312 RILGQGL----LGGNRKVTQLTIPAN-VTQINFSAFNN------TGIKEVKVEGTTPPQVFEKVW----YGFPD-DITVI 375 (401)
T ss_dssp CEECTTT----TTTCCSCCEEEECTT-CCEECTTSSSS------SCCCEEEECCSSCCBCCCSSC----CCSCT-TCCEE
T ss_pred EEEhhhh----hcCCCCccEEEECcc-ccEEcHHhCCC------CCCCEEEEcCCCCcccccccc----cCCCC-CccEE
Confidence 6655444 556799999999665 55544333322 479999999997764332222 11211 37888
Q ss_pred EccCCCCch
Q 007526 564 NLANNFLTK 572 (600)
Q Consensus 564 ~l~~n~l~~ 572 (600)
++..+.+..
T Consensus 376 ~vp~~~~~~ 384 (401)
T 4fdw_A 376 RVPAESVEK 384 (401)
T ss_dssp EECGGGHHH
T ss_pred EeCHHHHHH
Confidence 888875443
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=6.4e-06 Score=78.74 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=8.4
Q ss_pred HhCCCCcEEEccCCCCCh
Q 007526 384 KNCKSLLWINLYMNDIGD 401 (600)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~ 401 (600)
..+++|+.|+|++|.|.+
T Consensus 193 ~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCccCC
Confidence 344444444444444443
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.10 E-value=4.9e-07 Score=91.20 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=43.8
Q ss_pred CcccEEECcC-CCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHH
Q 007526 359 GKLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (600)
Q Consensus 359 ~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 437 (600)
.+|+.|+|++ |.++.. .+..+..+++|++|+|++|.|+.. .+..+..+++|++|+|++|+|+.... .
T Consensus 31 ~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~----~ 98 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALESLSW----K 98 (347)
T ss_dssp SCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCSCCCS----T
T ss_pred CCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCcccee----CHHHhcCCcCCCEEeCCCCccceeCH----H
Confidence 3566666664 666552 123345566666666666666552 22344555666666666666654211 1
Q ss_pred HhhcCCCcCEEECcCCCCC
Q 007526 438 VLKDNSVITSLDLAYNPIG 456 (600)
Q Consensus 438 ~l~~~~~L~~L~Ls~n~i~ 456 (600)
.+...+ |++|+|.+|.+.
T Consensus 99 ~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTCSCC-CCEEECCSSCCC
T ss_pred HcccCC-ceEEEeeCCCcc
Confidence 111112 666666666554
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.06 E-value=5e-07 Score=91.15 Aligned_cols=104 Identities=9% Similarity=0.125 Sum_probs=69.3
Q ss_pred cEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccC-CCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526 362 AVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (600)
Q Consensus 362 ~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (600)
..++++++ .++. +|. +..+++|++|+|++ |.|+.. ....+..+++|++|+|++|+|+... +..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFVA----PDAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEEC----TTGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccceeC----HHHh
Confidence 45677777 7776 676 77778888888885 887763 2244666788888888888887642 2345
Q ss_pred hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (600)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 484 (600)
..+++|++|+|++|+|+...... +... .|+.|++.+|.+.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~----~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKT----VQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTT----TCSC-CCCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHH----cccC-CceEEEeeCCCcc
Confidence 55688888888888776432111 1222 3777777777664
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.06 E-value=4.2e-08 Score=100.81 Aligned_cols=270 Identities=12% Similarity=0.141 Sum_probs=170.2
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH
Q 007526 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296 (600)
Q Consensus 217 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 296 (600)
+..++.+.+.++ ++..+. ..+.. .+|+.+.+..+ ++..+..+| .+ .+|+.+.+.. .++.-+ ..
T Consensus 112 ~~~l~~i~ip~~-i~~I~~----~aF~~-~~L~~i~l~~~-i~~I~~~aF----~~-~~L~~i~lp~-~l~~I~----~~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPK----DAFRN-SQIAKVVLNEG-LKSIGDMAF----FN-STVQEIVFPS-TLEQLK----ED 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECT----TTTTT-CCCSEEECCTT-CCEECTTTT----TT-CCCCEEECCT-TCCEEC----SS
T ss_pred cCCccEEEECCc-cCEehH----hhccc-CCccEEEeCCC-ccEECHHhc----CC-CCceEEEeCC-CccEeh----HH
Confidence 466788887653 332211 22223 57999999876 555433333 23 4699999986 343211 13
Q ss_pred HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhH
Q 007526 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (600)
Q Consensus 297 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~ 376 (600)
++..|.+|+.+++.+|.++..+... +. +.+|+.+.+..+ +...+. .....+++|+.+++..+ ++..+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~-----~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGS-----QAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECT-----TTTTTCTTCCCEECCTT-CCEECT
T ss_pred HhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehh-----hHhhCCCCCCEEecCCC-ccCccc
Confidence 4567999999999999887766533 33 579999999854 443221 11234558999999875 444221
Q ss_pred HHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH-HHHHHhhcCCCcCEEECcCCCC
Q 007526 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS-AIARVLKDNSVITSLDLAYNPI 455 (600)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i 455 (600)
..+.+ .+|+.+.+..+ +...+ ..++..|++|+.+++.+|.+...... .-..++..|++|+.++|.++ +
T Consensus 243 ----~aF~~-~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i 311 (401)
T 4fdw_A 243 ----EAFRE-SGITTVKLPNG-VTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I 311 (401)
T ss_dssp ----TTTTT-CCCSEEEEETT-CCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C
T ss_pred ----ccccc-CCccEEEeCCC-ccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e
Confidence 12334 68999999544 43321 23577799999999998876410000 01245777899999999854 5
Q ss_pred ChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEc
Q 007526 456 GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDL 535 (600)
Q Consensus 456 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~l 535 (600)
...+. .++..|.+|+.+.+..+ ++..+. .++..| +|+.+++.+|.+.......+ ......++.|++
T Consensus 312 ~~I~~----~aF~~c~~L~~l~lp~~-l~~I~~----~aF~~~-~L~~l~l~~n~~~~l~~~~F----~~~~~~l~~l~v 377 (401)
T 4fdw_A 312 RILGQ----GLLGGNRKVTQLTIPAN-VTQINF----SAFNNT-GIKEVKVEGTTPPQVFEKVW----YGFPDDITVIRV 377 (401)
T ss_dssp CEECT----TTTTTCCSCCEEEECTT-CCEECT----TSSSSS-CCCEEEECCSSCCBCCCSSC----CCSCTTCCEEEE
T ss_pred EEEhh----hhhcCCCCccEEEECcc-ccEEcH----HhCCCC-CCCEEEEcCCCCcccccccc----cCCCCCccEEEe
Confidence 54433 23467899999999665 555443 345677 99999999997765332222 222246888988
Q ss_pred cCCCC
Q 007526 536 AFNEI 540 (600)
Q Consensus 536 s~n~i 540 (600)
..+.+
T Consensus 378 p~~~~ 382 (401)
T 4fdw_A 378 PAESV 382 (401)
T ss_dssp CGGGH
T ss_pred CHHHH
Confidence 77653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=3.4e-05 Score=73.70 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=49.4
Q ss_pred HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh---HH
Q 007526 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD---GA 460 (600)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~---~~ 460 (600)
.++++|+.|+|++|.|++.. .++..+..+++|+.|+|++|.|++. ..+.. +... +|++|+|++|++... ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccC-CcceEEccCCcCccccCcch
Confidence 46777888888888776520 1233344567777777777777664 11211 2222 677777777766531 11
Q ss_pred HHHHHHHhhCCCccEEe
Q 007526 461 KALSEVLKFHGNINTLK 477 (600)
Q Consensus 461 ~~l~~~l~~~~~L~~L~ 477 (600)
.+....+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 22334445556666554
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.68 E-value=2.8e-08 Score=102.33 Aligned_cols=219 Identities=14% Similarity=0.147 Sum_probs=100.9
Q ss_pred HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHH
Q 007526 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (600)
Q Consensus 270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 349 (600)
+..+++|+.+.+.++..+ -+ ..++..+.+|+.+.+..+ ++..+. .++..+..|+.+.+..+...-..
T Consensus 158 F~~c~~L~~i~l~~~~~~-I~----~~~F~~c~~L~~i~l~~~-~~~I~~----~~F~~~~~L~~i~~~~~~~~i~~--- 224 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMET-LH----NGLFSGCGKLKSIKLPRN-LKIIRD----YCFAECILLENMEFPNSLYYLGD--- 224 (394)
T ss_dssp TTTCTTCCEEECCTTCCE-EC----TTTTTTCTTCCBCCCCTT-CCEECT----TTTTTCTTCCBCCCCTTCCEECT---
T ss_pred hcccCCCcEEecCCccce-ec----cccccCCCCceEEEcCCC-ceEeCc----hhhccccccceeecCCCceEeeh---
Confidence 344566676666544211 00 113344566666666544 222221 23445566666665544321100
Q ss_pred HHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (600)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (600)
.. .....|+.+.+... ++..+ ...+..+..++.+.+..+...-. ...+..+..++.+....+.+.+
T Consensus 225 ---~~-~~~~~l~~i~ip~~-~~~i~----~~~f~~~~~l~~~~~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 225 ---FA-LSKTGVKNIIIPDS-FTELG----KSVFYGCTDLESISIQNNKLRIG-----GSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp ---TT-TTTCCCCEEEECTT-CCEEC----SSTTTTCSSCCEEEECCTTCEEC-----SCTTTTCTTCCEEEECSSEECT
T ss_pred ---hh-cccCCCceEEECCC-ceecc----cccccccccceeEEcCCCcceee-----ccccccccccceeccCceeecc
Confidence 00 11225666655443 11100 01234566666666655422110 1234445666666665544332
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC
Q 007526 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (600)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 509 (600)
..+..|.+|+.+.+..+ +...+. .++..|.+|+.+++..+ ++..+.. ++..|.+|+.+++..+
T Consensus 291 -------~~F~~~~~L~~i~l~~~-i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 -------KTFYGCSSLTEVKLLDS-VKFIGE----EAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS 353 (394)
T ss_dssp -------TTTTTCTTCCEEEECTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT
T ss_pred -------ccccccccccccccccc-cceech----hhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc
Confidence 23445566777776544 222111 12345666777766543 3333332 2344566777766554
Q ss_pred CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526 510 GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (600)
Q Consensus 510 ~i~~~~~~~l~~~l~~~n~~L~~L~ls~n 538 (600)
++..+..+|..+ .+|+.+++..+
T Consensus 354 -l~~I~~~aF~~C-----~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 -LRKIGANAFQGC-----INLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTBTTC-----TTCCEEEEEGG
T ss_pred -ccEehHHHhhCC-----CCCCEEEECCC
Confidence 444433334333 45666666543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=5.6e-08 Score=100.06 Aligned_cols=218 Identities=13% Similarity=0.149 Sum_probs=118.3
Q ss_pred HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhH
Q 007526 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (600)
Q Consensus 297 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~ 376 (600)
++..|.+|+.+.+..+. ...+. .++..+.+|+.+++..+ +... ..........|+.+.+..+...-
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~----~~F~~c~~L~~i~l~~~-~~~I-----~~~~F~~~~~L~~i~~~~~~~~i--- 222 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHN----GLFSGCGKLKSIKLPRN-LKII-----RDYCFAECILLENMEFPNSLYYL--- 222 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECT----TTTTTCTTCCBCCCCTT-CCEE-----CTTTTTTCTTCCBCCCCTTCCEE---
T ss_pred hhcccCCCcEEecCCcc-ceecc----ccccCCCCceEEEcCCC-ceEe-----CchhhccccccceeecCCCceEe---
Confidence 34567788888876543 22221 34556777888777654 2211 11111233356666665543221
Q ss_pred HHHHHHHHhCCCCcEEEccCC--CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC
Q 007526 377 FHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454 (600)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 454 (600)
......+.+|+.+.+... .+.+ .++..+..|+.+.+..+...- -...+..|..++.+.+..+.
T Consensus 223 ---~~~~~~~~~l~~i~ip~~~~~i~~-------~~f~~~~~l~~~~~~~~~~~i-----~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 223 ---GDFALSKTGVKNIIIPDSFTELGK-------SVFYGCTDLESISIQNNKLRI-----GGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp ---CTTTTTTCCCCEEEECTTCCEECS-------STTTTCSSCCEEEECCTTCEE-----CSCTTTTCTTCCEEEECSSE
T ss_pred ---ehhhcccCCCceEEECCCceeccc-------ccccccccceeEEcCCCccee-----eccccccccccceeccCcee
Confidence 111234567777777543 2222 234456778888776653221 11234556777777776665
Q ss_pred CChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE
Q 007526 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534 (600)
Q Consensus 455 i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ 534 (600)
+.+. .+..+.+|+.+.+..+ +...+.. ++..|.+|+.+++.++ ++..+..+|..+ .+|+.++
T Consensus 288 i~~~-------~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c-----~~L~~i~ 349 (394)
T 4fs7_A 288 VPEK-------TFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGC-----TSLSNIN 349 (394)
T ss_dssp ECTT-------TTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTC-----TTCCEEC
T ss_pred eccc-------cccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCC-----CCCCEEE
Confidence 4432 2356778888887654 3333322 3455688888888643 555444444443 5788888
Q ss_pred ccCCCCChhHHHHHHHHHHhCcccceeEEEccCC
Q 007526 535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568 (600)
Q Consensus 535 ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n 568 (600)
+..+ ++..+..++ ..|.. |+.+++..+
T Consensus 350 lp~~-l~~I~~~aF----~~C~~--L~~i~lp~~ 376 (394)
T 4fs7_A 350 FPLS-LRKIGANAF----QGCIN--LKKVELPKR 376 (394)
T ss_dssp CCTT-CCEECTTTB----TTCTT--CCEEEEEGG
T ss_pred ECcc-ccEehHHHh----hCCCC--CCEEEECCC
Confidence 8765 444333333 33333 778877654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.11 E-value=1.5e-05 Score=81.73 Aligned_cols=315 Identities=10% Similarity=0.169 Sum_probs=157.7
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCC---CCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG---ITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (600)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (600)
.|+++.+..+ ++..+ ..++..|.+|+++.+..+. ++..+-.+ +..|.+|+.+.+..+ ++..+.
T Consensus 65 ~L~sI~iP~s-vt~Ig----~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a----F~~c~~L~~i~~~~~-~~~I~~---- 130 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIG----SNAFYNCTSLKRVTIQDNKPSCVKKIGRQA----FMFCSELTDIPILDS-VTEIDS---- 130 (394)
T ss_dssp CCCEEEECTT-CCEEC----TTTTTTCTTCCEEEEGGGCCCCCCEECTTT----TTTCTTCCBCGGGTT-CSEECT----
T ss_pred cCEEEEECCC-eeEEh----HHHhhCCccCceEeecCCCCCeeeEechhh----chhcccceeeccCCc-cceehh----
Confidence 4777777543 22221 2346677888888877652 44333322 345677777776543 221111
Q ss_pred HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (600)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 319 (600)
..+..+.+|+.+.+..+ +...+. ..+..+..|+.+.+.++ ++. +.........|+.+.+..+.. ..+.
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~----~~F~~c~~L~~i~~~~~-~~~-----I~~~aF~~~~l~~i~ip~~~~-~i~~ 198 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVAD----GMFSYCYSLHTVTLPDS-VTA-----IEERAFTGTALTQIHIPAKVT-RIGT 198 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEECCTT-CCE-----ECTTTTTTCCCSEEEECTTCC-EECT
T ss_pred hhhhhhcccccccccce-eeeecc----cceecccccccccccce-eeE-----eccccccccceeEEEECCccc-cccc
Confidence 23345677888887643 222111 22345577888877654 211 111112346777777755421 1111
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh-------hh--cCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCc
Q 007526 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG-------LS--SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390 (600)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------l~--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 390 (600)
.++..+..++.............-. +... +. .....+..+.+.+. +...+ ...+..|..|+
T Consensus 199 ----~af~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~----~~aF~~c~~L~ 268 (394)
T 4gt6_A 199 ----NAFSECFALSTITSDSESYPAIDNV-LYEKSANGDYALIRYPSQREDPAFKIPNG-VARIE----THAFDSCAYLA 268 (394)
T ss_dssp ----TTTTTCTTCCEEEECCSSSCBSSSC-EEEECTTSCEEEEECCTTCCCSEEECCTT-EEEEC----TTTTTTCSSCC
T ss_pred ----chhhhccccceecccccccccccce-eecccccccccccccccccccceEEcCCc-ceEcc----cceeeeccccc
Confidence 3345667777766554432210000 0000 00 00012333333321 11110 12356788899
Q ss_pred EEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC
Q 007526 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470 (600)
Q Consensus 391 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 470 (600)
.+.+..+...- + ..++..+..|+.+.+.. .++..+. .++..|.+|+.++|..+ ++..+. .++..|
T Consensus 269 ~i~lp~~~~~I-~----~~aF~~c~~L~~i~l~~-~i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~C 333 (394)
T 4gt6_A 269 SVKMPDSVVSI-G----TGAFMNCPALQDIEFSS-RITELPE----SVFAGCISLKSIDIPEG-ITQILD----DAFAGC 333 (394)
T ss_dssp EEECCTTCCEE-C----TTTTTTCTTCCEEECCT-TCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTTTC
T ss_pred EEeccccccee-c----CcccccccccccccCCC-cccccCc----eeecCCCCcCEEEeCCc-ccEehH----hHhhCC
Confidence 99886653211 0 13466688899998864 3443322 34667899999999765 332222 244678
Q ss_pred CCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (600)
Q Consensus 471 ~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~ 541 (600)
.+|+.+.+..+ ++..+. .++.+|++|+.+++.++... + ..+. ...+|+.+.+..+.+.
T Consensus 334 ~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~~------~-~~~~-~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRSQ------W-NAIS-TDSGLQNLPVAPGSID 391 (394)
T ss_dssp TTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHHH------H-HTCB-CCCCC-----------
T ss_pred CCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCceee------h-hhhh-ccCCCCEEEeCCCCEE
Confidence 89999999654 444433 34567799999999886321 1 1121 1267888888776543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.83 E-value=7.9e-05 Score=76.33 Aligned_cols=296 Identities=9% Similarity=0.124 Sum_probs=146.9
Q ss_pred HHhCCCccEEEcCCCC---CCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHH
Q 007526 158 AKELRAFSSVDMSGRN---FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234 (600)
Q Consensus 158 ~~~~~~L~~L~Ls~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 234 (600)
+..+.+|+++.+..+. +...+ ..++..|.+|+.+.+..+ ++..+. .++..|.+|+.+.+..+. ...+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig----~~aF~~c~~L~~i~~~~~-~~~I~~----~aF~~c~~L~~i~lp~~~-~~I~ 152 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIG----RQAFMFCSELTDIPILDS-VTEIDS----EAFHHCEELDTVTIPEGV-TSVA 152 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEEC----TTTTTTCTTCCBCGGGTT-CSEECT----TTTTTCTTCCEEECCTTC-CEEC
T ss_pred hhCCccCceEeecCCCCCeeeEec----hhhchhcccceeeccCCc-cceehh----hhhhhhccccccccccee-eeec
Confidence 4468889999886542 33322 234566788888777654 222211 234567889999987532 1111
Q ss_pred HHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCC
Q 007526 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYG 314 (600)
Q Consensus 235 ~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l 314 (600)
...+..+..|+.+.+..+ ++..+..++ ....|+.+.+..+-.. .+ ..++..+..++.........
T Consensus 153 ----~~~F~~c~~L~~i~~~~~-~~~I~~~aF-----~~~~l~~i~ip~~~~~-i~----~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 153 ----DGMFSYCYSLHTVTLPDS-VTAIEERAF-----TGTALTQIHIPAKVTR-IG----TNAFSECFALSTITSDSESY 217 (394)
T ss_dssp ----TTTTTTCTTCCEEECCTT-CCEECTTTT-----TTCCCSEEEECTTCCE-EC----TTTTTTCTTCCEEEECCSSS
T ss_pred ----ccceecccccccccccce-eeEeccccc-----cccceeEEEECCcccc-cc----cchhhhccccceeccccccc
Confidence 123445788888888654 333222222 2356888887654221 11 12344566777766554332
Q ss_pred ChHHHHHHH---------HHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHh
Q 007526 315 GALGANALA---------KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385 (600)
Q Consensus 315 ~~~~~~~l~---------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 385 (600)
.......+. ........+..+.+... +.. +..........|+.+.+.++... .+ ...+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~-----i~~~aF~~c~~L~~i~lp~~~~~-I~----~~aF~~ 286 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VAR-----IETHAFDSCAYLASVKMPDSVVS-IG----TGAFMN 286 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEE-----ECTTTTTTCSSCCEEECCTTCCE-EC----TTTTTT
T ss_pred ccccceeecccccccccccccccccccceEEcCCc-ceE-----cccceeeecccccEEecccccce-ec----Cccccc
Confidence 111000000 00001122333333211 111 11111123346777777654221 10 123567
Q ss_pred CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (600)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (600)
++.|+.+.+..+ +...+ ..++..|.+|+.+++..+ ++..+. .++..|.+|+.+.|..+ ++..+. .
T Consensus 287 c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~C~~L~~i~ip~s-v~~I~~----~ 351 (394)
T 4gt6_A 287 CPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEG-ITQILD----DAFAGCEQLERIAIPSS-VTKIPE----S 351 (394)
T ss_dssp CTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEECTT-CCBCCG----G
T ss_pred ccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCc-ccEehH----hHhhCCCCCCEEEECcc-cCEEhH----h
Confidence 788888888543 32211 134666788888888654 333222 34667788888888654 332222 2
Q ss_pred HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (600)
Q Consensus 466 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 511 (600)
++.+|.+|+.+++.++.. ....+..|..|+.+.+..+.+
T Consensus 352 aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGTTCTTCCEEEESSCHH-------HHHTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCCE
Confidence 446788888888887632 123456678888888876543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.13 E-value=0.032 Score=46.71 Aligned_cols=69 Identities=19% Similarity=0.108 Sum_probs=41.8
Q ss_pred cEEeccCcCCC--hhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC-hhHHHHHHH
Q 007526 474 NTLKLGWCQIG--ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQ 550 (600)
Q Consensus 474 ~~L~l~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~-~~~~~~l~~ 550 (600)
..++.+++.++ ..... + -++|++|+|++|.|+......|... ++|++|+|++|.+. +-....+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-l------p~~l~~L~Ls~N~l~~l~~~~f~~l-----~~L~~L~L~~NP~~CdC~l~~l~~ 78 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-F------PVDTTELVLTGNNLTALPPGLLDAL-----PALRTAHLGANPWRCDCRLVPLRA 78 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-C------CTTCSEEECTTSCCSSCCTTTGGGC-----TTCCEEECCSSCCBCSGGGHHHHH
T ss_pred CEEEeCCCCCccccCCCC-C------CcCCCEEECCCCcCCccChhhhhhc-----cccCEEEecCCCeeccCccHHHHH
Confidence 36777777776 43211 1 1468888888888876544434332 67888888888765 333444555
Q ss_pred HHHh
Q 007526 551 ALKA 554 (600)
Q Consensus 551 ~~~~ 554 (600)
++..
T Consensus 79 wl~~ 82 (130)
T 3rfe_A 79 WLAG 82 (130)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.02 E-value=0.28 Score=40.83 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=18.1
Q ss_pred CccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (600)
Q Consensus 472 ~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 512 (600)
+|++|+|++|+|+......| ...++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f----~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLL----DALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTG----GGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhh----hhccccCEEEecCCCee
Confidence 45555555555544433222 22355666666666443
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.56 E-value=0.035 Score=56.02 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=9.0
Q ss_pred HhccCCCccEEEccc
Q 007526 185 SLGYNQTAEEVSFAA 199 (600)
Q Consensus 185 ~l~~~~~L~~L~Ls~ 199 (600)
++..|.+|++++|..
T Consensus 64 aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS 78 (379)
T ss_dssp TTTTCTTCCEEEECT
T ss_pred HhhCCCCCCEEEeCC
Confidence 355566666666654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=77.04 E-value=0.33 Score=48.66 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=15.1
Q ss_pred hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (600)
Q Consensus 469 ~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 507 (600)
.|.+|+.+.+.++.++..+..+ +..|.+|+.++|.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp 318 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECC
T ss_pred cccccccccccccccceehhhh----hcCCCCCCEEEcC
Confidence 3445555555444443332222 2334555555554
Done!