Query 007527
Match_columns 600
No_of_seqs 294 out of 1257
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 11:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 2.4E-51 5.3E-56 392.4 12.2 158 16-196 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 99.2 1.1E-11 2.3E-16 98.8 5.5 54 437-490 4-60 (60)
3 smart00353 HLH helix loop heli 99.2 2.4E-11 5.2E-16 94.8 5.7 49 442-490 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.2 2.7E-11 5.8E-16 95.7 5.0 49 438-486 2-55 (55)
5 KOG1318 Helix loop helix trans 98.7 3.6E-08 7.8E-13 106.2 7.3 58 433-490 229-290 (411)
6 KOG1319 bHLHZip transcription 98.3 5.3E-07 1.2E-11 87.1 5.4 64 437-500 62-132 (229)
7 KOG2483 Upstream transcription 98.2 4.9E-06 1.1E-10 84.3 7.9 69 432-500 54-125 (232)
8 KOG3960 Myogenic helix-loop-he 97.9 1.6E-05 3.5E-10 80.2 6.7 69 431-499 112-182 (284)
9 KOG4304 Transcriptional repres 97.7 2.1E-05 4.5E-10 80.8 3.3 54 437-490 32-93 (250)
10 KOG3561 Aryl-hydrocarbon recep 97.7 3.3E-05 7.1E-10 89.8 4.8 51 438-488 21-75 (803)
11 KOG2588 Predicted DNA-binding 97.7 2.5E-05 5.5E-10 91.0 3.2 66 435-500 274-340 (953)
12 KOG0561 bHLH transcription fac 97.4 0.00014 2.9E-09 75.3 3.9 57 437-493 60-118 (373)
13 cd04895 ACT_ACR_1 ACT domain-c 97.4 0.00079 1.7E-08 56.6 7.5 48 545-592 3-50 (72)
14 cd04897 ACT_ACR_3 ACT domain-c 97.3 0.0011 2.3E-08 56.3 7.5 48 545-592 3-50 (75)
15 cd04927 ACT_ACR-like_2 Second 97.2 0.0013 2.9E-08 55.4 7.5 49 544-592 1-50 (76)
16 cd04900 ACT_UUR-like_1 ACT dom 97.0 0.0034 7.4E-08 52.1 7.7 50 544-593 2-52 (73)
17 cd04925 ACT_ACR_2 ACT domain-c 96.8 0.0048 1E-07 51.6 7.6 48 545-592 2-49 (74)
18 cd04896 ACT_ACR-like_3 ACT dom 96.8 0.0049 1.1E-07 52.3 7.2 45 545-589 2-48 (75)
19 KOG4029 Transcription factor H 96.7 0.002 4.3E-08 65.4 5.4 60 436-495 108-171 (228)
20 PLN03217 transcription factor 96.7 0.0031 6.6E-08 54.2 5.5 53 450-502 20-78 (93)
21 cd04926 ACT_ACR_4 C-terminal 96.3 0.018 4E-07 47.7 7.8 49 545-593 3-51 (72)
22 cd04899 ACT_ACR-UUR-like_2 C-t 96.2 0.025 5.3E-07 45.8 7.6 48 545-592 2-49 (70)
23 PF13291 ACT_4: ACT domain; PD 95.7 0.054 1.2E-06 45.4 7.9 50 543-592 6-57 (80)
24 cd04873 ACT_UUR-ACR-like ACT d 95.4 0.08 1.7E-06 42.3 7.7 49 545-593 2-50 (70)
25 cd04928 ACT_TyrKc Uncharacteri 95.3 0.082 1.8E-06 44.1 7.5 48 545-592 3-51 (68)
26 PF13740 ACT_6: ACT domain; PD 95.2 0.088 1.9E-06 44.1 7.4 50 543-592 2-51 (76)
27 PF01842 ACT: ACT domain; Int 94.7 0.12 2.7E-06 40.7 6.9 37 545-581 2-38 (66)
28 cd04893 ACT_GcvR_1 ACT domains 94.7 0.12 2.7E-06 43.4 7.1 49 544-592 2-50 (77)
29 cd04872 ACT_1ZPV ACT domain pr 94.2 0.14 3E-06 44.0 6.3 50 544-593 2-51 (88)
30 PRK00194 hypothetical protein; 93.8 0.19 4E-06 43.1 6.5 51 543-593 3-53 (90)
31 cd04869 ACT_GcvR_2 ACT domains 93.8 0.28 6E-06 40.9 7.3 48 546-593 2-55 (81)
32 cd04877 ACT_TyrR N-terminal AC 93.7 0.13 2.9E-06 42.6 5.1 50 545-595 2-51 (74)
33 cd04887 ACT_MalLac-Enz ACT_Mal 93.5 0.36 7.8E-06 39.4 7.3 47 546-592 2-49 (74)
34 PRK05007 PII uridylyl-transfer 93.3 0.22 4.8E-06 60.1 8.1 61 532-592 795-857 (884)
35 cd04875 ACT_F4HF-DF N-terminal 93.0 0.38 8.3E-06 39.7 6.9 48 545-592 1-50 (74)
36 cd04886 ACT_ThrD-II-like C-ter 93.0 0.38 8.3E-06 38.1 6.7 46 546-591 1-51 (73)
37 cd04888 ACT_PheB-BS C-terminal 92.1 0.6 1.3E-05 38.1 6.9 47 545-591 2-49 (76)
38 cd04870 ACT_PSP_1 CT domains f 91.8 0.53 1.2E-05 39.1 6.2 50 545-594 1-50 (75)
39 PRK00275 glnD PII uridylyl-tra 91.5 0.61 1.3E-05 56.5 8.8 61 533-593 802-864 (895)
40 PRK01759 glnD PII uridylyl-tra 91.5 0.51 1.1E-05 56.9 8.1 61 532-592 770-832 (854)
41 PRK03381 PII uridylyl-transfer 91.4 0.71 1.5E-05 55.1 9.0 61 533-593 695-757 (774)
42 KOG3910 Helix loop helix trans 91.3 0.14 3.1E-06 56.6 2.9 58 434-491 523-584 (632)
43 PRK04374 PII uridylyl-transfer 91.2 0.79 1.7E-05 55.4 9.3 62 532-593 783-846 (869)
44 PRK04435 hypothetical protein; 90.9 1 2.2E-05 42.9 7.9 55 539-593 65-120 (147)
45 KOG4447 Transcription factor T 90.8 0.14 3.1E-06 48.7 2.1 52 437-488 78-131 (173)
46 PRK05092 PII uridylyl-transfer 90.2 1.1 2.4E-05 54.6 9.3 61 532-592 830-892 (931)
47 cd04874 ACT_Af1403 N-terminal 89.6 1.4 3.1E-05 34.8 6.7 48 545-592 2-50 (72)
48 cd02116 ACT ACT domains are co 89.3 1.6 3.5E-05 31.2 6.4 46 546-591 1-48 (60)
49 PRK03059 PII uridylyl-transfer 89.2 1.2 2.5E-05 53.9 8.4 58 533-590 774-833 (856)
50 PRK03381 PII uridylyl-transfer 88.2 2 4.3E-05 51.3 9.4 52 541-592 597-648 (774)
51 cd04876 ACT_RelA-SpoT ACT dom 88.1 2.1 4.5E-05 32.5 6.5 44 546-589 1-45 (71)
52 PRK01759 glnD PII uridylyl-tra 88.1 1.6 3.6E-05 52.6 8.7 60 533-592 665-727 (854)
53 cd04879 ACT_3PGDH-like ACT_3PG 87.9 1.7 3.7E-05 34.0 6.1 46 546-591 2-49 (71)
54 KOG3558 Hypoxia-inducible fact 87.8 0.36 7.9E-06 55.6 2.8 42 443-484 52-97 (768)
55 KOG3560 Aryl-hydrocarbon recep 87.3 0.49 1.1E-05 53.2 3.4 38 446-483 34-75 (712)
56 TIGR01693 UTase_glnD [Protein- 87.3 1.7 3.7E-05 52.3 8.3 53 541-593 666-719 (850)
57 PRK00275 glnD PII uridylyl-tra 87.3 1.6 3.5E-05 52.9 8.0 52 542-593 703-755 (895)
58 TIGR01693 UTase_glnD [Protein- 87.0 1.8 4E-05 52.1 8.3 60 532-591 766-827 (850)
59 PRK03059 PII uridylyl-transfer 86.7 2 4.4E-05 51.9 8.4 53 540-592 675-728 (856)
60 cd04889 ACT_PDH-BS-like C-term 86.6 1.7 3.7E-05 33.6 5.2 47 546-592 1-48 (56)
61 KOG3559 Transcriptional regula 86.5 0.59 1.3E-05 50.9 3.3 41 444-484 8-52 (598)
62 cd04894 ACT_ACR-like_1 ACT dom 86.4 1.9 4.1E-05 35.6 5.4 46 545-590 2-47 (69)
63 PRK05007 PII uridylyl-transfer 86.1 2.5 5.3E-05 51.3 8.7 60 533-592 689-751 (884)
64 cd04903 ACT_LSD C-terminal ACT 85.3 3.4 7.5E-05 32.4 6.6 48 545-592 1-50 (71)
65 cd04881 ACT_HSDH-Hom ACT_HSDH_ 84.5 4 8.7E-05 32.7 6.7 35 545-579 2-36 (79)
66 cd04878 ACT_AHAS N-terminal AC 83.8 5.5 0.00012 31.2 7.2 46 545-590 2-49 (72)
67 PRK05092 PII uridylyl-transfer 83.6 3.8 8.2E-05 50.0 8.8 60 533-592 720-782 (931)
68 PRK08577 hypothetical protein; 83.5 5.7 0.00012 37.0 8.2 51 541-591 54-106 (136)
69 PRK07334 threonine dehydratase 83.0 3.9 8.5E-05 44.9 8.0 55 541-595 324-385 (403)
70 KOG3898 Transcription factor N 82.9 0.91 2E-05 47.1 2.8 53 436-488 71-126 (254)
71 cd04908 ACT_Bt0572_1 N-termina 81.3 3.7 7.9E-05 33.1 5.2 45 545-589 3-47 (66)
72 PRK06027 purU formyltetrahydro 80.6 4.9 0.00011 42.4 7.3 50 542-591 5-56 (286)
73 PRK04374 PII uridylyl-transfer 79.4 5.9 0.00013 48.1 8.3 53 541-593 688-741 (869)
74 cd04882 ACT_Bt0572_2 C-termina 79.1 4.8 0.0001 31.5 5.2 46 546-591 2-49 (65)
75 COG2844 GlnD UTP:GlnB (protein 78.0 5.2 0.00011 47.6 7.0 53 531-583 777-831 (867)
76 PRK13011 formyltetrahydrofolat 77.3 9.2 0.0002 40.4 8.1 50 543-592 7-58 (286)
77 cd04909 ACT_PDH-BS C-terminal 76.4 7 0.00015 31.3 5.5 35 545-579 3-37 (69)
78 cd04880 ACT_AAAH-PDT-like ACT 76.1 10 0.00022 31.1 6.5 44 547-590 3-49 (75)
79 cd04883 ACT_AcuB C-terminal AC 75.6 15 0.00032 29.5 7.3 48 545-592 3-52 (72)
80 KOG4395 Transcription factor A 75.0 4 8.7E-05 42.2 4.4 54 437-490 174-230 (285)
81 cd04905 ACT_CM-PDT C-terminal 74.1 14 0.00031 30.8 7.0 48 545-592 3-51 (80)
82 cd04884 ACT_CBS C-terminal ACT 72.5 15 0.00032 29.9 6.6 34 546-579 2-35 (72)
83 PRK11589 gcvR glycine cleavage 69.3 9.1 0.0002 38.1 5.5 51 542-592 7-57 (190)
84 cd04902 ACT_3PGDH-xct C-termin 69.0 12 0.00027 29.8 5.3 45 547-591 3-49 (73)
85 PRK10872 relA (p)ppGpp synthet 67.7 16 0.00035 43.5 7.9 53 543-595 666-722 (743)
86 COG3830 ACT domain-containing 67.5 7.7 0.00017 34.2 3.9 50 543-592 3-52 (90)
87 TIGR00691 spoT_relA (p)ppGpp s 67.5 15 0.00033 43.4 7.7 53 543-595 610-665 (683)
88 PRK13010 purU formyltetrahydro 64.9 15 0.00033 38.9 6.3 48 543-590 9-58 (289)
89 PRK11092 bifunctional (p)ppGpp 64.0 19 0.00042 42.7 7.6 53 543-595 626-681 (702)
90 cd04901 ACT_3PGDH C-terminal A 62.9 7.2 0.00016 31.0 2.8 45 548-592 4-48 (69)
91 TIGR00119 acolac_sm acetolacta 62.1 29 0.00063 33.6 7.2 48 545-592 3-52 (157)
92 PRK11895 ilvH acetolactate syn 60.5 32 0.00069 33.5 7.2 48 545-592 4-53 (161)
93 PF13710 ACT_5: ACT domain; PD 59.4 32 0.00068 28.0 6.0 41 552-592 1-43 (63)
94 PRK11061 fused phosphoenolpyru 58.0 17 0.00036 43.5 5.8 58 124-181 67-132 (748)
95 cd04892 ACT_AK-like_2 ACT doma 56.9 44 0.00096 25.2 6.3 34 545-578 2-38 (65)
96 cd04922 ACT_AKi-HSDH-ThrA_2 AC 56.5 54 0.0012 25.5 6.8 37 544-580 2-41 (66)
97 cd04868 ACT_AK-like ACT domain 56.2 53 0.0012 24.2 6.5 27 553-579 13-39 (60)
98 TIGR01817 nifA Nif-specific re 55.3 13 0.00029 42.2 4.3 74 124-197 68-153 (534)
99 PRK11152 ilvM acetolactate syn 55.0 41 0.0009 28.6 6.1 48 545-592 5-54 (76)
100 COG4492 PheB ACT domain-contai 51.7 47 0.001 31.6 6.4 53 540-592 69-122 (150)
101 cd04919 ACT_AK-Hom3_2 ACT doma 47.9 93 0.002 24.3 7.0 40 545-584 3-45 (66)
102 PF13185 GAF_2: GAF domain; PD 47.8 15 0.00032 32.7 2.5 52 130-181 68-125 (148)
103 KOG4447 Transcription factor T 46.6 12 0.00025 36.1 1.7 44 444-487 29-77 (173)
104 cd04916 ACT_AKiii-YclM-BS_2 AC 45.6 98 0.0021 24.0 6.7 39 545-583 3-44 (66)
105 cd04904 ACT_AAAH ACT domain of 45.3 40 0.00086 28.0 4.5 34 547-580 4-37 (74)
106 cd04931 ACT_PAH ACT domain of 44.2 83 0.0018 27.5 6.5 36 544-579 15-50 (90)
107 PRK06737 acetolactate synthase 44.1 89 0.0019 26.7 6.5 47 545-591 4-52 (76)
108 cd04885 ACT_ThrD-I Tandem C-te 44.1 48 0.001 26.8 4.8 45 547-592 2-49 (68)
109 cd04890 ACT_AK-like_1 ACT doma 41.7 95 0.0021 24.2 6.1 35 552-588 12-46 (62)
110 cd04912 ACT_AKiii-LysC-EC-like 39.0 1.3E+02 0.0029 24.7 6.8 33 544-576 2-37 (75)
111 PF02120 Flg_hook: Flagellar h 38.9 94 0.002 25.9 6.0 48 532-579 26-79 (85)
112 PRK06382 threonine dehydratase 38.8 98 0.0021 34.1 7.7 53 540-592 327-384 (406)
113 COG0317 SpoT Guanosine polypho 37.4 91 0.002 37.1 7.4 50 542-591 626-676 (701)
114 COG2844 GlnD UTP:GlnB (protein 37.4 86 0.0019 37.9 7.1 57 536-592 677-734 (867)
115 cd04924 ACT_AK-Arch_2 ACT doma 37.1 1.7E+02 0.0037 22.5 6.9 40 544-583 2-44 (66)
116 cd04906 ACT_ThrD-I_1 First of 36.8 84 0.0018 26.7 5.4 47 543-591 1-50 (85)
117 cd04932 ACT_AKiii-LysC-EC_1 AC 36.6 1.5E+02 0.0033 24.8 6.8 43 544-588 2-47 (75)
118 cd04933 ACT_AK1-AT_1 ACT domai 36.4 1.5E+02 0.0033 25.2 6.8 42 545-588 3-47 (78)
119 TIGR01127 ilvA_1Cterm threonin 34.2 1.3E+02 0.0028 32.7 7.6 53 540-592 302-359 (380)
120 PRK08198 threonine dehydratase 33.9 1.5E+02 0.0033 32.5 8.1 53 540-592 324-381 (404)
121 cd04921 ACT_AKi-HSDH-ThrA-like 32.7 1.8E+02 0.0038 23.7 6.6 37 544-580 2-41 (80)
122 KOG3582 Mlx interactors and re 31.8 13 0.00028 43.4 -0.6 62 435-496 649-715 (856)
123 PF02344 Myc-LZ: Myc leucine z 30.3 51 0.0011 23.6 2.4 17 445-461 13-29 (32)
124 cd04937 ACT_AKi-DapG-BS_2 ACT 30.2 2.1E+02 0.0046 22.6 6.4 30 545-574 3-35 (64)
125 COG4747 ACT domain-containing 30.1 1.3E+02 0.0028 28.2 5.6 48 545-592 5-52 (142)
126 PRK11589 gcvR glycine cleavage 28.4 1.6E+02 0.0034 29.4 6.4 51 544-594 96-152 (190)
127 COG0788 PurU Formyltetrahydrof 28.0 1.7E+02 0.0037 31.0 6.8 52 542-593 6-59 (287)
128 CHL00100 ilvH acetohydroxyacid 27.8 1.6E+02 0.0035 29.0 6.3 48 545-592 4-53 (174)
129 cd04913 ACT_AKii-LysC-BS-like_ 27.6 1.6E+02 0.0034 23.0 5.3 27 551-577 10-36 (75)
130 cd04929 ACT_TPH ACT domain of 27.6 1.2E+02 0.0026 25.5 4.7 30 550-579 7-36 (74)
131 PF13840 ACT_7: ACT domain ; P 27.2 1.1E+02 0.0025 24.6 4.4 35 541-575 4-42 (65)
132 cd04923 ACT_AK-LysC-DapG-like_ 26.5 2.8E+02 0.0061 20.9 6.4 33 545-577 2-37 (63)
133 cd04935 ACT_AKiii-DAPDC_1 ACT 26.3 2.7E+02 0.0058 23.2 6.6 26 551-576 12-37 (75)
134 PRK06635 aspartate kinase; Rev 25.6 1.9E+02 0.0041 31.6 7.1 53 538-590 257-311 (404)
135 cd04934 ACT_AK-Hom3_1 CT domai 25.3 2.9E+02 0.0063 22.9 6.6 32 545-576 3-37 (73)
136 cd04930 ACT_TH ACT domain of t 23.2 2.4E+02 0.0051 25.8 6.1 36 544-579 42-77 (115)
137 cd04936 ACT_AKii-LysC-BS-like_ 22.8 3.4E+02 0.0073 20.5 6.6 33 545-577 2-37 (63)
138 PF06005 DUF904: Protein of un 22.3 1.5E+02 0.0032 25.1 4.2 26 475-500 13-38 (72)
139 KOG0709 CREB/ATF family transc 22.0 1.3E+02 0.0027 34.1 4.8 46 441-500 261-306 (472)
140 cd04918 ACT_AK1-AT_2 ACT domai 21.9 2.4E+02 0.0051 22.5 5.3 33 552-584 12-44 (65)
141 smart00338 BRLZ basic region l 21.7 1.1E+02 0.0024 24.7 3.3 22 479-500 25-46 (65)
142 PRK13562 acetolactate synthase 21.4 3.1E+02 0.0068 24.0 6.1 46 545-590 4-51 (84)
143 TIGR00656 asp_kin_monofn aspar 20.5 3.6E+02 0.0077 29.5 8.0 50 537-586 254-306 (401)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=2.4e-51 Score=392.38 Aligned_cols=158 Identities=51% Similarity=0.876 Sum_probs=145.9
Q ss_pred HHHHHHHhhcCCCcEEEEEeecCCCCCccEEEccccccCCccccccccccccChhhhhhhhHHHHHHHHhhhccCCCCcc
Q 007527 16 LKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQRSEQLRELYESLSAGESNPQ 95 (600)
Q Consensus 16 Lq~~L~~~~~~~~WtYAIFWq~s~~~~gvL~WgDGy~~g~~k~~k~~~~~e~~~~~~~~~r~~~lreL~~sl~~g~~~~~ 95 (600)
||++|+.+|.+.+|+||||||+++++ .+|+||||||+|++++++.. ++.+++|+++||+||.++.
T Consensus 1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~-~~L~W~DG~~~g~~~~~~~~-------~~~~~~~~~~l~~l~~~~~------- 65 (163)
T PF14215_consen 1 LQQRLRSLVENSQWTYAVFWKLSPDN-SVLVWGDGYCNGPKETRKNG-------EEEQEQRSKVLRELHSSFS------- 65 (163)
T ss_pred ChHHHHHHhCCCCCcEEEEeEEcCCC-CeeeEcceeecCCcccccch-------hhccchhhhHHHHHhhhcc-------
Confidence 79999999999999999999999887 59999999999998877544 1445899999999996553
Q ss_pred cccCCCCcCCCCCCcCcceeeeeEeeeeeecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCc-----eEEEEeeC
Q 007527 96 AASKRPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAK-----TVVCFPHL 170 (600)
Q Consensus 96 ~~~~~~~~al~~e~~td~Ewfyl~~ms~~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lak-----TvvciP~~ 170 (600)
..++.+++|+|+||||++||+|+| |+|+|||||++|+|+||++++.++.+.|+|+++|| ||||||+.
T Consensus 66 ------~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~ 137 (163)
T PF14215_consen 66 ------SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVP 137 (163)
T ss_pred ------ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEec
Confidence 144679999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred CceEeecccceeccChhHHHHHHHHh
Q 007527 171 HGVVELGVTELVLEEPGFIQHIKTSF 196 (600)
Q Consensus 171 ~GVvELGSt~~I~Ed~~lv~~vk~~F 196 (600)
+||||||||++|+||++||++||++|
T Consensus 138 ~GVvELGSt~~I~Ed~~~v~~vk~~F 163 (163)
T PF14215_consen 138 NGVVELGSTEKIPEDSNLVQRVKSLF 163 (163)
T ss_pred CCEEEeeeeeeeccCHHHHHHHHhhC
Confidence 99999999999999999999999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.24 E-value=1.1e-11 Score=98.83 Aligned_cols=54 Identities=30% Similarity=0.616 Sum_probs=50.6
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHHHHH
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
.+..|+..||+||++||..|..|+++||.. .|+||++||..||+||+.|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999998 899999999999999999998763
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.20 E-value=2.4e-11 Score=94.80 Aligned_cols=49 Identities=39% Similarity=0.642 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCC---CCCCChhchHHHHHHHHHHHHHHHH
Q 007527 442 VKSERRQRGKLNERFVILKSMVPS---VSKFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 442 ~~~ER~RR~kin~~f~~LrslvP~---~~K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
+..||+||++||+.|..|+++||. ..|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999995 5899999999999999999999876
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.18 E-value=2.7e-11 Score=95.66 Aligned_cols=49 Identities=37% Similarity=0.710 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhccCCCC-----CCCChhchHHHHHHHHHHHH
Q 007527 438 ATNHVKSERRQRGKLNERFVILKSMVPSV-----SKFDKVSILDDTIEYVQELE 486 (600)
Q Consensus 438 ~~~h~~~ER~RR~kin~~f~~LrslvP~~-----~K~dKasIL~daI~YIk~Lq 486 (600)
+..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999976 78999999999999999997
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.67 E-value=3.6e-08 Score=106.25 Aligned_cols=58 Identities=29% Similarity=0.548 Sum_probs=52.2
Q ss_pred cchhhccchhHHHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHHHHHHHH
Q 007527 433 EAEETATNHVKSERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 433 ~~~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
..+-.+.+|++.|||||++||+++..|..|||.+ .|..|.+||..+.+||++||+..+
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 3445578999999999999999999999999988 577799999999999999998776
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.35 E-value=5.3e-07 Score=87.06 Aligned_cols=64 Identities=28% Similarity=0.492 Sum_probs=57.4
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC-------CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV-------SKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~-------~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
.+..|.-+||+||+-||.-+..|+.|||.+ .|..||.||..+|+||.+|.+++.+.+.+...|.
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~ 132 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLR 132 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366899999999999999999999999966 3778999999999999999999988888877665
No 7
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.16 E-value=4.9e-06 Score=84.30 Aligned_cols=69 Identities=32% Similarity=0.425 Sum_probs=58.5
Q ss_pred ccchhhccchhHHHHHHHHHHHHHHHHhhccCCCC--CCCC-hhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 432 LEAEETATNHVKSERRQRGKLNERFVILKSMVPSV--SKFD-KVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 432 ~~~~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~--~K~d-KasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
......+..|+..||+||..|.+.|..|+.+||.. .+.. .++||..|+.||+.|+.+..+.+..++.|.
T Consensus 54 ~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 54 SSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666789999999999999999999999999988 3333 589999999999999988877766666554
No 8
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.94 E-value=1.6e-05 Score=80.17 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=59.0
Q ss_pred cccchhhccchhHHHHHHHHHHHHHHHHh-hccCCCC-CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007527 431 RLEAEETATNHVKSERRQRGKLNERFVIL-KSMVPSV-SKFDKVSILDDTIEYVQELERKVKELESCRAKL 499 (600)
Q Consensus 431 ~~~~~~~~~~h~~~ER~RR~kin~~f~~L-rslvP~~-~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l 499 (600)
+...-+.|..-.+.||||=.|+||-|.+| |.-.+|. .+.-|+-||..||.||..||.-++++.+....+
T Consensus 112 ks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 112 KSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 33455567788899999999999999999 6667887 788999999999999999999999888776655
No 9
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.72 E-value=2.1e-05 Score=80.80 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=48.1
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC--------CCCChhchHHHHHHHHHHHHHHHH
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV--------SKFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~--------~K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
...+|-+.|||||.+||+.+..||.|||.. +|++||-||.-|++|++.|+....
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 356788999999999999999999999943 788999999999999999997654
No 10
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.69 E-value=3.3e-05 Score=89.84 Aligned_cols=51 Identities=25% Similarity=0.439 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHHHHHH
Q 007527 438 ATNHVKSERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQELERK 488 (600)
Q Consensus 438 ~~~h~~~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~Lq~~ 488 (600)
|.+|+.+|||||+|+|..+..|.+|||.+ .|+||.+||..||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 78999999999999999999999999977 5999999999999999999884
No 11
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.65 E-value=2.5e-05 Score=90.98 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=60.8
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhccCCCC-CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 435 EETATNHVKSERRQRGKLNERFVILKSMVPSV-SKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 435 ~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~-~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
++.+.+|+++|||.|--||+++..||.+||.. .|+.|.++|..||+||++|+...+.+..++..++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 67799999999999999999999999999988 8999999999999999999998888877776654
No 12
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.38 E-value=0.00014 Score=75.29 Aligned_cols=57 Identities=30% Similarity=0.482 Sum_probs=49.2
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC--CCCChhchHHHHHHHHHHHHHHHHHHH
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV--SKFDKVSILDDTIEYVQELERKVKELE 493 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~--~K~dKasIL~daI~YIk~Lq~~v~~Le 493 (600)
.|.--+--||||-.-||.-|..||+|+|.- .|..||.||..+.+||.+|+.+.-+|-
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 344456679999999999999999999975 899999999999999999997765443
No 13
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.00079 Score=56.63 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=44.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
+|+|.++.|+|+|.+|..+|.++||+|+.|.+++.++.+.-++-|...
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~ 50 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ 50 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC
Confidence 689999999999999999999999999999999999988877777655
No 14
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0011 Score=56.26 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=43.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
+|+|.|+.|+|+|.+|..+|-+++|+|++|.+++.++...-.+-|+..
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~ 50 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK 50 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC
Confidence 689999999999999999999999999999999999887766666544
No 15
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.0013 Score=55.38 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeec
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~ 592 (600)
++|+|.|+.|+|+|.+|..+|..+||.|++|.+++ .+|...-++.|...
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~ 50 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA 50 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC
Confidence 47999999999999999999999999999999996 88988888888765
No 16
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0034 Score=52.11 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=44.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-CcEEEEEEEEeecc
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-EAFYLLLSKVSTED 593 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-dg~~~lt~kV~~~~ 593 (600)
..|.|.|+.|+|+|.+|..+|..+||+|++|.+.+. +|.+.-++.|...+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 368899999999999999999999999999999876 78888888887543
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.0048 Score=51.57 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=45.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
+|+|.++.|+|+|.+|..+|..+|+.|+.|.+++.++.+..++.|...
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~ 49 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE 49 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC
Confidence 589999999999999999999999999999999999999999998754
No 18
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0049 Score=52.28 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=41.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee--ecCcEEEEEEEE
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP--PIEAFYLLLSKV 589 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS--~~dg~~~lt~kV 589 (600)
+|+|.|+.|+|+|.+|..+|..++|+|+.|.++ +.+....-++-|
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv 48 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV 48 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE
Confidence 589999999999999999999999999999999 988877766666
No 19
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.75 E-value=0.002 Score=65.35 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=51.4
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHHHHHHHHHHHHH
Q 007527 436 ETATNHVKSERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQELERKVKELESC 495 (600)
Q Consensus 436 ~~~~~h~~~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~Lq~~v~~Le~~ 495 (600)
..+..++..||+|=+-+|..|..||.+||.. .|..|+.+|.-||.||+.|++-++.-+..
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 3456677789999999999999999999964 68899999999999999999877665543
No 20
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.73 E-value=0.0031 Score=54.20 Aligned_cols=53 Identities=28% Similarity=0.562 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhccCCCC------CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007527 450 GKLNERFVILKSMVPSV------SKFDKVSILDDTIEYVQELERKVKELESCRAKLEAN 502 (600)
Q Consensus 450 ~kin~~f~~LrslvP~~------~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~d~ 502 (600)
+.|++....|+.|+|.. .|..-+-+|.+|..||+.|+++|..|..+..+|.+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999975 233444589999999999999999999999887643
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.018 Score=47.75 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=43.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
.|.|.++.++|+|.+|..+|.++++.|+++.+.+.++....++.|...+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~ 51 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN 51 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC
Confidence 5778899999999999999999999999999998888777888887643
No 22
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.18 E-value=0.025 Score=45.76 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=42.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.|.|.|+.++|+|.+|+.+|.++++.|.++.+.+.++.....+.++..
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC
Confidence 588999999999999999999999999999999988777777777654
No 23
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.71 E-value=0.054 Score=45.37 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=41.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeec
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTE 592 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~ 592 (600)
.+.|+|.+..|+|+|.+|..+|.+.++.+.++++... ++.+.+++.++..
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~ 57 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK 57 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence 4789999999999999999999999999999999984 6777766666654
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.44 E-value=0.08 Score=42.30 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=43.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
.|.|.|+.++|+|.+|+.+|.++++.|.++.+.+.++.....+.|..++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 5788999999999999999999999999999988776777778877654
No 25
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.35 E-value=0.082 Score=44.08 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=42.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~ 592 (600)
.|-|.|+.++|+|++|..+|..++|.|+.|++-+ .+|+..-++.|...
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~ 51 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW 51 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC
Confidence 4677899999999999999999999999999985 58888888888754
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=95.20 E-value=0.088 Score=44.11 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=44.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.++|.+.+++|+|++..|..+|.+.|..+..++.++.++.|.+.+.|+.+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 47899999999999999999999999999999999999999999888766
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=94.75 E-value=0.12 Score=40.67 Aligned_cols=37 Identities=11% Similarity=0.319 Sum_probs=34.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCc
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEA 581 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg 581 (600)
.|.|.|+.|+|+|.+|..+|.++++.|.++.+....+
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5789999999999999999999999999999998765
No 28
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=94.74 E-value=0.12 Score=43.37 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=45.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
+.|.+.|+.|+|+..+|-..|.+.|..+..++....++.|.+.+.++.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~ 50 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS 50 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec
Confidence 5789999999999999999999999999999999999998888877755
No 29
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.18 E-value=0.14 Score=43.98 Aligned_cols=50 Identities=10% Similarity=0.262 Sum_probs=46.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
+.|.+.|+.++|++.+|.+.|-++|+.+.+++..+.++.|.+++.|..+.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~ 51 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE 51 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC
Confidence 57899999999999999999999999999999999889999888888664
No 30
>PRK00194 hypothetical protein; Validated
Probab=93.83 E-value=0.19 Score=43.15 Aligned_cols=51 Identities=8% Similarity=0.251 Sum_probs=45.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
.+.|.|.|++++|++.+|.+.|.+.|+.|.+.+..+.++.+.+++.++.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~ 53 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE 53 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC
Confidence 478999999999999999999999999999999998889888877777654
No 31
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=93.79 E-value=0.28 Score=40.87 Aligned_cols=48 Identities=8% Similarity=0.192 Sum_probs=42.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC------cEEEEEEEEeecc
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE------AFYLLLSKVSTED 593 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d------g~~~lt~kV~~~~ 593 (600)
|.|.|+.++|++.+|-+.|.++|+.+..++..+.+ +.+.+++.|..+.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~ 55 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA 55 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC
Confidence 67899999999999999999999999999998876 7888777777664
No 32
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.65 E-value=0.13 Score=42.56 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=42.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeeccCC
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQM 595 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~~l 595 (600)
.|+|.|..|.|+|.+|+.+|.+.+..+.++++.+. +.+.+++.|...++|
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~~~~~L 51 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTIEFEKL 51 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEecCHHHH
Confidence 58899999999999999999999999999999876 666677777654544
No 33
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.47 E-value=0.36 Score=39.38 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=38.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-CcEEEEEEEEeec
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-EAFYLLLSKVSTE 592 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-dg~~~lt~kV~~~ 592 (600)
|+|.++.++|+|.+|+.+|.+.+..+.++++... ++...+.+.+++.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~ 49 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP 49 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC
Confidence 7889999999999999999999999999998775 4665555554443
No 34
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.30 E-value=0.22 Score=60.11 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=51.2
Q ss_pred cceeEEE--eeCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 532 ADNINVS--INEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 532 ~~~VeV~--i~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.+.|.+. ..+.-..|+|.|..|+|+|.+|..+|.++||+|++|.++|.++.+.-++-|++.
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~ 857 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA 857 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC
Confidence 3455553 345668999999999999999999999999999999999999888777777654
No 35
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.05 E-value=0.38 Score=39.68 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=40.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~~ 592 (600)
.|.|.|+.|+|++.+|.+.|.++|+.+...+..+ ..+.|.+.+.+..+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 3789999999999999999999999999998885 45677777776655
No 36
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.01 E-value=0.38 Score=38.11 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=35.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-----CcEEEEEEEEee
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-----EAFYLLLSKVST 591 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-----dg~~~lt~kV~~ 591 (600)
+.|.++.++|.|.+|+++|.+.++.+.++..... .+...+.+.++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~ 51 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET 51 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe
Confidence 4678999999999999999999999999887653 355444444443
No 37
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.15 E-value=0.6 Score=38.13 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=37.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-CcEEEEEEEEee
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-EAFYLLLSKVST 591 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-dg~~~lt~kV~~ 591 (600)
.|.|.++.++|++.+|+++|.+.++.+..++.+.. ++...+.+.++.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v 49 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT 49 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence 57889999999999999999999999999987654 465554444443
No 38
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.76 E-value=0.53 Score=39.11 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=44.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeeccC
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQ 594 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~~ 594 (600)
+|.|.++.|+|++.+|-++|.++++.+...+.++.++.|.+.+.|..+..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 37889999999999999999999999999999999999888888776643
No 39
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.53 E-value=0.61 Score=56.46 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=52.3
Q ss_pred ceeEEEe--eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 533 DNINVSI--NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 533 ~~VeV~i--~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
+.|.+.- .++-..|+|.++.|+|+|.+|..+|..+||+|+.|.++|.++.+.-++.|...+
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~ 864 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD 864 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence 4555542 345679999999999999999999999999999999999999999999987653
No 40
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=91.52 E-value=0.51 Score=56.88 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=51.3
Q ss_pred cceeEEE--eeCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 532 ADNINVS--INEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 532 ~~~VeV~--i~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
++.|.+- ..+.-..|+|.++.|+|+|.+|..+|.++||+|++|.++|.++.+.-++-|++.
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~ 832 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ 832 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC
Confidence 3455552 345568999999999999999999999999999999999999988877777654
No 41
>PRK03381 PII uridylyl-transferase; Provisional
Probab=91.38 E-value=0.71 Score=55.06 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=51.5
Q ss_pred ceeEEEe--eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 533 DNINVSI--NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 533 ~~VeV~i--~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
+.|.+.- .++-..|+|.|+.|+|+|.+|..+|..++|+|++|.++|.++.+.-++.|...+
T Consensus 695 ~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 695 PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred cEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 3444433 334589999999999999999999999999999999999999999888887653
No 42
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=91.30 E-value=0.14 Score=56.63 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=48.4
Q ss_pred chhhccchhHHHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHHHHHHHHH
Q 007527 434 AEETATNHVKSERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQELERKVKE 491 (600)
Q Consensus 434 ~~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~Lq~~v~~ 491 (600)
..+.|..+++.||-|=..||+-|++|-.|.--- ..-.|..||..|+.-|-.||++|.+
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 556789999999999889999999997665322 2335899999999999999999975
No 43
>PRK04374 PII uridylyl-transferase; Provisional
Probab=91.23 E-value=0.79 Score=55.35 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=53.1
Q ss_pred cceeEEE--eeCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 532 ADNINVS--INEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 532 ~~~VeV~--i~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
++.|.+. ..+.-..|+|.++.|+|+|.+|..+|..++|.|+.|.++|.++.+.-++.|...+
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~ 846 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH 846 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 3556654 2345689999999999999999999999999999999999999999888887653
No 44
>PRK04435 hypothetical protein; Provisional
Probab=90.86 E-value=1 Score=42.86 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=46.1
Q ss_pred eeCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-CcEEEEEEEEeecc
Q 007527 539 INEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-EAFYLLLSKVSTED 593 (600)
Q Consensus 539 i~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-dg~~~lt~kV~~~~ 593 (600)
..|+.+.|.+.++.++|+|.+|+++|.+.++.|.+++.+.. +|...+++.+++.+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~ 120 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS 120 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC
Confidence 46889999999999999999999999999999999987654 67766666665543
No 45
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=90.82 E-value=0.14 Score=48.71 Aligned_cols=52 Identities=25% Similarity=0.416 Sum_probs=47.3
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC--CCCChhchHHHHHHHHHHHHHH
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV--SKFDKVSILDDTIEYVQELERK 488 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~--~K~dKasIL~daI~YIk~Lq~~ 488 (600)
.+.-|++.||+|=..||+-|.+||.++|.. .|..|.--|.-|.-||-.|-+-
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 577899999999999999999999999976 8889999999999999998653
No 46
>PRK05092 PII uridylyl-transferase; Provisional
Probab=90.17 E-value=1.1 Score=54.56 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=51.3
Q ss_pred cceeEEEe--eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 532 ADNINVSI--NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 532 ~~~VeV~i--~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.+.|.+.- .+.-..|.|.|+.|+|+|.+|..+|.++||+|.+|.++|.++...-++.|...
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~ 892 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL 892 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC
Confidence 35566643 34457999999999999999999999999999999999999888877777653
No 47
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.56 E-value=1.4 Score=34.80 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=39.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-CcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-EAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-dg~~~lt~kV~~~ 592 (600)
.|.|.++.++|.|.+|+..|.+.++.+.++..... ++...+++.++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~ 50 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV 50 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc
Confidence 47788999999999999999999999999887765 4565566666543
No 48
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=89.27 E-value=1.6 Score=31.21 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=35.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC--cEEEEEEEEee
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE--AFYLLLSKVST 591 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d--g~~~lt~kV~~ 591 (600)
|++.|+.++|.+.+|+.+|...++.+..+..+..+ +...+++.++.
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDG 48 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEec
Confidence 56889999999999999999999999999877653 33444444443
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=89.23 E-value=1.2 Score=53.89 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=49.7
Q ss_pred ceeEEEe--eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEe
Q 007527 533 DNINVSI--NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVS 590 (600)
Q Consensus 533 ~~VeV~i--~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~ 590 (600)
+.|.+.- .++-..|+|.|+.|+|+|.+|..+|..++|+|++|.++|.++.+.-++.|.
T Consensus 774 ~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 774 PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 3444432 345679999999999999999999999999999999999999998888884
No 50
>PRK03381 PII uridylyl-transferase; Provisional
Probab=88.21 E-value=2 Score=51.32 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=47.9
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 541 EKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 541 ~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.+-+.|.|.|+.|+|++++|..+|..+|+.|+.|++.+.+|.+..++.|...
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~ 648 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR 648 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC
Confidence 4668999999999999999999999999999999999999999999888753
No 51
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=88.13 E-value=2.1 Score=32.50 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=34.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC-cEEEEEEEE
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE-AFYLLLSKV 589 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d-g~~~lt~kV 589 (600)
|+|.|+.++|.+.+|++.|.+.++++..+.....+ +...+.+.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 46789999999999999999999999998877654 444334333
No 52
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=88.09 E-value=1.6 Score=52.61 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=50.4
Q ss_pred ceeEEE--eeCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeec
Q 007527 533 DNINVS--INEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 533 ~~VeV~--i~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~ 592 (600)
+-|.+. ...+-..|.|.|+.++|+|++|..+|..+||.|++|.+.+ .+|.+.-++.|...
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~ 727 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL 727 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC
Confidence 444443 3445679999999999999999999999999999999876 89999888888755
No 53
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=87.93 E-value=1.7 Score=34.03 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=39.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC--cEEEEEEEEee
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE--AFYLLLSKVST 591 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d--g~~~lt~kV~~ 591 (600)
|.|.++.++|++.+|++.|.+.++.+.++.+.... +...+++.++.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 67789999999999999999999999999988754 67777777744
No 54
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.76 E-value=0.36 Score=55.64 Aligned_cols=42 Identities=38% Similarity=0.545 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHH
Q 007527 443 KSERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQE 484 (600)
Q Consensus 443 ~~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~ 484 (600)
-+-|-||.|=|+-|+.|..+||-. +..|||||+.-||.|++-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 467899999999999999999954 788999999999999863
No 55
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=87.34 E-value=0.49 Score=53.21 Aligned_cols=38 Identities=37% Similarity=0.637 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHH
Q 007527 446 RRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQ 483 (600)
Q Consensus 446 R~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk 483 (600)
+|-|+|||..+..|.+|+|.. +|.||.|||.=++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456899999999999999965 99999999999999985
No 56
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=87.33 E-value=1.7 Score=52.33 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=47.0
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee-ecCcEEEEEEEEeecc
Q 007527 541 EKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP-PIEAFYLLLSKVSTED 593 (600)
Q Consensus 541 ~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS-~~dg~~~lt~kV~~~~ 593 (600)
..-..|.|.++.++|+|.+|..+|..++|+|++|+++ +.+|.+.-++.|...+
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 4567899999999999999999999999999999999 6788888888887553
No 57
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=87.29 E-value=1.6 Score=52.93 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=46.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEe-eecCcEEEEEEEEeecc
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNH-PPIEAFYLLLSKVSTED 593 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~s-S~~dg~~~lt~kV~~~~ 593 (600)
+-..|-|.|+.++|+|++|..+|..+||.|+.|++ |+.+|..+-++.|...+
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 56789999999999999999999999999999998 56788988888887643
No 58
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=87.00 E-value=1.8 Score=52.07 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=48.0
Q ss_pred cceeEEE--eeCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEee
Q 007527 532 ADNINVS--INEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVST 591 (600)
Q Consensus 532 ~~~VeV~--i~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~ 591 (600)
.+.|.+. ..+.-..|+|.|..|+|+|.+|.++|.++|++|+++.+++.++...-.+-|+.
T Consensus 766 ~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~ 827 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827 (850)
T ss_pred CCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC
Confidence 3455553 23456899999999999999999999999999999999998876555555543
No 59
>PRK03059 PII uridylyl-transferase; Provisional
Probab=86.70 E-value=2 Score=51.86 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=47.4
Q ss_pred eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEe-eecCcEEEEEEEEeec
Q 007527 540 NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNH-PPIEAFYLLLSKVSTE 592 (600)
Q Consensus 540 ~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~s-S~~dg~~~lt~kV~~~ 592 (600)
..+...|-|.|+.++|++++|..+|..++|.|+.|++ |+.+|++.-++.|..+
T Consensus 675 ~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~ 728 (856)
T PRK03059 675 AGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP 728 (856)
T ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC
Confidence 3456799999999999999999999999999999999 5689999999999754
No 60
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=86.55 E-value=1.7 Score=33.63 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=38.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC-cEEEEEEEEeec
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE-AFYLLLSKVSTE 592 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d-g~~~lt~kV~~~ 592 (600)
|.|..+.++|.|.+|.++|.+.++.+.++.+...+ +.-.+.+.++..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~ 48 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDP 48 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCH
Confidence 45778999999999999999999999998887765 555666666553
No 61
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=86.45 E-value=0.59 Score=50.94 Aligned_cols=41 Identities=34% Similarity=0.485 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHH
Q 007527 444 SERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQE 484 (600)
Q Consensus 444 ~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~ 484 (600)
+-|.||+|=|-.|..|..++|-. +..||++|+.-|..|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 45899999999999999999965 679999999999999984
No 62
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.38 E-value=1.9 Score=35.60 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=40.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEe
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVS 590 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~ 590 (600)
.|.|.||.+.|+--+|...+-+.||.|....+|+.+.-.++.+-|.
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv 47 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVV 47 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEe
Confidence 5889999999999999999999999999999999887665555443
No 63
>PRK05007 PII uridylyl-transferase; Provisional
Probab=86.10 E-value=2.5 Score=51.34 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=48.9
Q ss_pred ceeEEEe--eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeec
Q 007527 533 DNINVSI--NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 533 ~~VeV~i--~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~ 592 (600)
+-|.+.- ..+-..|.|.|+.++|+|.+|..+|..++|+|+.|.+.+ .+|.+.-++.|...
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~ 751 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP 751 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC
Confidence 3444432 445789999999999999999999999999999999876 46788888888654
No 64
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.26 E-value=3.4 Score=32.39 Aligned_cols=48 Identities=6% Similarity=0.081 Sum_probs=37.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~ 592 (600)
+|.+.++.++|.+.+|+..|.+.++.+.++..... ++...+.+.++..
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~ 50 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP 50 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC
Confidence 46788999999999999999999999998877652 4555555665543
No 65
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.45 E-value=4 Score=32.66 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
+|+|.+..++|++.+|+..|.+.++.+..+.....
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 68999999999999999999999999999987654
No 66
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=83.83 E-value=5.5 Score=31.20 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=36.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEe
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVS 590 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~ 590 (600)
+|.|.+..++|+|.+|+..|.+.++.+.++..... ++...+.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 57788999999999999999999999999987764 45544444444
No 67
>PRK05092 PII uridylyl-transferase; Provisional
Probab=83.58 E-value=3.8 Score=50.01 Aligned_cols=60 Identities=8% Similarity=-0.080 Sum_probs=49.0
Q ss_pred ceeEEEe--eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeec
Q 007527 533 DNINVSI--NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 533 ~~VeV~i--~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~ 592 (600)
+.|.+.. ..+...|.|.|+.++|+|.+|..+|..+|++|+.+.+.+ .+|+...++.|..+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~ 782 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA 782 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC
Confidence 3444433 335689999999999999999999999999999999887 68887777888644
No 68
>PRK08577 hypothetical protein; Provisional
Probab=83.51 E-value=5.7 Score=36.96 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=40.5
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEee
Q 007527 541 EKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVST 591 (600)
Q Consensus 541 ~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~ 591 (600)
.+.+.|+|.+..++|+|.+|+++|.+.++.+.+.++.+. ++.+.+++.++.
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev 106 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL 106 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence 347889999999999999999999999999998877664 455544444443
No 69
>PRK07334 threonine dehydratase; Provisional
Probab=83.04 E-value=3.9 Score=44.92 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=43.8
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-----CcEEE--EEEEEeeccCC
Q 007527 541 EKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-----EAFYL--LLSKVSTEDQM 595 (600)
Q Consensus 541 ~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-----dg~~~--lt~kV~~~~~l 595 (600)
+-.+.|+|.+..|+|+|.+|+.+|.+.++.|.++++... ++... +++.|...++|
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L 385 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHL 385 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHH
Confidence 345999999999999999999999999999999998764 56654 55555544544
No 70
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=82.91 E-value=0.91 Score=47.14 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=46.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHHH
Q 007527 436 ETATNHVKSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELERK 488 (600)
Q Consensus 436 ~~~~~h~~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~~ 488 (600)
-.|..-+..||+|--.+|+-|..||.++|.. .|+.|+-.|.-|-+||..|++-
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3466778889999999999999999999954 7889999999999999988753
No 71
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=81.30 E-value=3.7 Score=33.06 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEE
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKV 589 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV 589 (600)
.|.|..+.++|.|.+|+++|.+.++.|.+.-+....+...+.+++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence 467788999999999999999999999988776655544444444
No 72
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=80.62 E-value=4.9 Score=42.40 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=45.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEee
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVST 591 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~ 591 (600)
..+.|.+.|+.|+|+..+|-++|.++|+.+...+.++ ..|.|.+.+.+..
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 3578999999999999999999999999999999999 8888888888776
No 73
>PRK04374 PII uridylyl-transferase; Provisional
Probab=79.38 E-value=5.9 Score=48.07 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=47.4
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeecc
Q 007527 541 EKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTED 593 (600)
Q Consensus 541 ~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~~ 593 (600)
.+-..|-|.|+.++|++++|..+|..+||.|+.|++.+ .+|++.-++.|...+
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~ 741 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD 741 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence 35678999999999999999999999999999999987 689999999987653
No 74
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.12 E-value=4.8 Score=31.48 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=36.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC--cEEEEEEEEee
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE--AFYLLLSKVST 591 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d--g~~~lt~kV~~ 591 (600)
|.|.-+.++|.|.+|++.|.+.++.|.++..+... +...+.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 56777899999999999999999999877665443 56666777765
No 75
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.01 E-value=5.2 Score=47.64 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=45.2
Q ss_pred ccceeEEEe--eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEE
Q 007527 531 TADNINVSI--NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFY 583 (600)
Q Consensus 531 ~~~~VeV~i--~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~ 583 (600)
..|.|.+.- ..+--.|+|.+..|+|+|..|-.+|.+++|++++|.++|.+..+
T Consensus 777 i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErv 831 (867)
T COG2844 777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERV 831 (867)
T ss_pred cCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccc
Confidence 447777753 44567999999999999999999999999999999999988633
No 76
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=77.27 E-value=9.2 Score=40.42 Aligned_cols=50 Identities=10% Similarity=0.316 Sum_probs=43.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEeec
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVSTE 592 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~~ 592 (600)
.+.|.|.|++|+|+..+|-+.|-++++.+...+..+ .++.|.+.+.+..+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p 58 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE 58 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC
Confidence 478999999999999999999999999999999874 56678777777644
No 77
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.41 E-value=7 Score=31.34 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=30.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
.+.|.++.++|.|.+|+..|.+.++.+..+.....
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46788999999999999999999999998865553
No 78
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=76.06 E-value=10 Score=31.11 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=33.6
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCc---EEEEEEEEe
Q 007527 547 EIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEA---FYLLLSKVS 590 (600)
Q Consensus 547 ~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg---~~~lt~kV~ 590 (600)
-+..++++|.|.+|++.+.+.++.++++++....+ .+.+.+.++
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 34457899999999999999999999998886543 344444444
No 79
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.61 E-value=15 Score=29.48 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=37.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~ 592 (600)
.|.+..+.++|.|.+|++.|.+.++.+.++..... ++.-.+.+.+++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~ 52 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM 52 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC
Confidence 57788999999999999999999999988764432 3555566666643
No 80
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=75.00 E-value=4 Score=42.16 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=46.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHHHHH
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
.+..-+..||+|-..||.-|..||.+||.. .|..|-.-|.-|-.||--|-...+
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 456678899999999999999999999987 677788889999999988866553
No 81
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=74.14 E-value=14 Score=30.78 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=35.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC-cEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE-AFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d-g~~~lt~kV~~~ 592 (600)
.|.+.-+.++|.|.+|++.+.++++.++++.+.... +...+.+.|+.+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 455566789999999999999999999999876652 233344444433
No 82
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.49 E-value=15 Score=29.92 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=29.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
+.|.=+.++|.|.+|++.|.+.|..|+++.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4567789999999999999999999999876654
No 83
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=69.28 E-value=9.1 Score=38.10 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=45.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
..+.|.+.++.|+|+...|-++|-++|..+...+.+..+|.|...+.|+.+
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~ 57 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS 57 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC
Confidence 458899999999999999999999999999999999999988777766544
No 84
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=68.96 E-value=12 Score=29.84 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=36.8
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEee
Q 007527 547 EIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVST 591 (600)
Q Consensus 547 ~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~ 591 (600)
-+..+.++|.+.+|.+.|.+.++.+.++.++. .++...+.+.++.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 45789999999999999999999998887765 3466667777765
No 85
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=67.71 E-value=16 Score=43.54 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=42.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEE--EEEEEeeccCC
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYL--LLSKVSTEDQM 595 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~--lt~kV~~~~~l 595 (600)
.|.|+|.+..|.|+|.+|..+|.+.++.|.++++.+. ++++. +++.|..-++|
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L 722 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVL 722 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHH
Confidence 4689999999999999999999999999999998765 57655 44555544444
No 86
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=67.55 E-value=7.7 Score=34.23 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=46.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
-+.|.|.-..|.|+.+.|-.+|-++++.++.++=+..+|+|.+-+.|..+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 37888888999999999999999999999999999999999998888876
No 87
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=67.47 E-value=15 Score=43.41 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=43.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-CcEEE--EEEEEeeccCC
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-EAFYL--LLSKVSTEDQM 595 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-dg~~~--lt~kV~~~~~l 595 (600)
.+.|+|.+.++.|+|.+|+.+|.+.+..|.+++++.. ++++. +++.|..-.+|
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~L 665 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYKHL 665 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHHHH
Confidence 5689999999999999999999999999999999876 46655 44555444443
No 88
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=64.94 E-value=15 Score=38.91 Aligned_cols=48 Identities=8% Similarity=0.223 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee--ecCcEEEEEEEEe
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP--PIEAFYLLLSKVS 590 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS--~~dg~~~lt~kV~ 590 (600)
.+.|.|.|+.|+|+.+.|-..|-+.|+.++.++.. +..+.|++.+.+.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 46899999999999999999999999999999885 3334444443333
No 89
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=64.03 E-value=19 Score=42.70 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=42.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC-cEEE--EEEEEeeccCC
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE-AFYL--LLSKVSTEDQM 595 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d-g~~~--lt~kV~~~~~l 595 (600)
.+.|+|.+.++.|+|.+|+.+|.+.++.+.++++.+.+ +++. +++.|..-.+|
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~L 681 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDRVHL 681 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCHHHH
Confidence 56899999999999999999999999999999987764 5655 44555444443
No 90
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=62.92 E-value=7.2 Score=30.97 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=35.0
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 548 IKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 548 I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
+.+..++|++.+|+..|.+.+..+........++...+++.++..
T Consensus 4 ~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~ 48 (69)
T cd04901 4 HIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE 48 (69)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC
Confidence 467899999999999999999999877665555666555555543
No 91
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=62.11 E-value=29 Score=33.56 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=41.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC--cEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE--AFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d--g~~~lt~kV~~~ 592 (600)
.|.|.-++++|.|.+|...|...|+.+.+..+...+ +...+++.|..+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d 52 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD 52 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC
Confidence 577888999999999999999999999998887653 777788888764
No 92
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=60.46 E-value=32 Score=33.48 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=41.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~ 592 (600)
.|.|.-++++|.|.+|...|...|+.+.+..+... .++..+++.|+.+
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~ 53 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD 53 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC
Confidence 57788899999999999999999999999887754 4777888988765
No 93
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=59.43 E-value=32 Score=27.96 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=34.2
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEeec
Q 007527 552 WREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVSTE 592 (600)
Q Consensus 552 ~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~~ 592 (600)
+++|.|.+|+..+..-|+.+.+.+++. .+++..+++-|..+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 468999999999999999999988887 67888888888763
No 94
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=58.05 E-value=17 Score=43.55 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=39.3
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCC-CcccccC--CceEEEEeeCC-----ceEeecccce
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSK-VFSRSLL--AKTVVCFPHLH-----GVVELGVTEL 181 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~-~~~R~~l--akTvvciP~~~-----GVvELGSt~~ 181 (600)
.|+.|+|+.|+++.++.++++.+...-... .+++... .++++|||+.. |||.+.+...
T Consensus 67 ~l~~geGi~G~Va~tg~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~ 132 (748)
T PRK11061 67 TLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQREL 132 (748)
T ss_pred eccCCcchHHHHhccCceEEECCcccCcccccCccccCccceEEEEEEEeeCCEEEEEEEEeeCCC
Confidence 567799999999999999999877643211 1122111 23899999763 6666655544
No 95
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=56.88 E-value=44 Score=25.23 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=27.8
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEeee
Q 007527 545 QIEIKCP---WREGMLLEIMDAISNLHLYSHRFNHPP 578 (600)
Q Consensus 545 ~I~I~C~---~r~glL~~Im~aL~~L~LdV~sa~sS~ 578 (600)
+|.|.+. .+.+.+.+|+++|.+.++.+..+..+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5667654 567899999999999999998886654
No 96
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=56.51 E-value=54 Score=25.50 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=28.5
Q ss_pred EEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEeeecC
Q 007527 544 VQIEIKCP---WREGMLLEIMDAISNLHLYSHRFNHPPIE 580 (600)
Q Consensus 544 v~I~I~C~---~r~glL~~Im~aL~~L~LdV~sa~sS~~d 580 (600)
++|.|.+. ..++++.+|+++|.+.++.|..++.+..+
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~ 41 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE 41 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 35666664 56789999999999999999877654444
No 97
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=56.17 E-value=53 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 553 REGMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 553 r~glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
..+.+.+|+++|.+.++.+.....+..
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~ 39 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSES 39 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 678999999999999999988876654
No 98
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=55.33 E-value=13 Score=42.19 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=49.6
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCC-cc--cccCCceEEEEeeC-----CceEeecccce----eccChhHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKV-FS--RSLLAKTVVCFPHL-----HGVVELGVTEL----VLEEPGFIQH 191 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-~~--R~~lakTvvciP~~-----~GVvELGSt~~----I~Ed~~lv~~ 191 (600)
.|..|+|+.|+++.+++++++.+........ .. .....++++|||+. -|||.+.+... -.+|.+|+..
T Consensus 68 ~~~~~~gi~g~v~~~~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL~~ 147 (534)
T TIGR01817 68 RYRVGEGAIGQIVATGNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFLEM 147 (534)
T ss_pred cccCCccHHHHHHhcCCeEEecccccCchhhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHHHH
Confidence 4567999999999999999998775422110 00 11223499999975 48999988753 3456666666
Q ss_pred HHHHhc
Q 007527 192 IKTSFM 197 (600)
Q Consensus 192 vk~~F~ 197 (600)
+-....
T Consensus 148 lA~~ia 153 (534)
T TIGR01817 148 VANLIG 153 (534)
T ss_pred HHHHHH
Confidence 555543
No 99
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=55.01 E-value=41 Score=28.65 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=39.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~~ 592 (600)
.|.+.-.+++|.|.+|+..++.-|..|.+.++.. ..++..+++-|..+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~ 54 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASE 54 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCC
Confidence 5677778999999999999999999998888776 45667788777643
No 100
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=51.68 E-value=47 Score=31.55 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=44.3
Q ss_pred eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeec
Q 007527 540 NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 540 ~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~ 592 (600)
.+..+.+.+.-..|-|.|+++++++-..++.|+++.=+. .+|...+|+.+.+.
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s 122 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS 122 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch
Confidence 355678888899999999999999999999999987664 68887777766655
No 101
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.89 E-value=93 Score=24.31 Aligned_cols=40 Identities=5% Similarity=0.004 Sum_probs=29.1
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEeeecCcEEE
Q 007527 545 QIEIKCP---WREGMLLEIMDAISNLHLYSHRFNHPPIEAFYL 584 (600)
Q Consensus 545 ~I~I~C~---~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~ 584 (600)
+|.|... .+++.+.+|+++|.+.++.|.-+..+..+..+.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~is 45 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINIS 45 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEE
Confidence 4555554 468899999999999999998775544443333
No 102
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=47.78 E-value=15 Score=32.71 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=31.3
Q ss_pred CccceeecCCCcEeee-CCCCCCCCCcccccCCceEEEEeeC-C----ceEeecccce
Q 007527 130 GLPGRALANNQPIWLC-NAQYADSKVFSRSLLAKTVVCFPHL-H----GVVELGVTEL 181 (600)
Q Consensus 130 GlpG~a~~~g~~~Wl~-~~~~~~~~~~~R~~lakTvvciP~~-~----GVvELGSt~~ 181 (600)
|+.+.++.+++++|+. ...........+..-.++++|||+. + |||.|++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~ 125 (148)
T PF13185_consen 68 GLWEGVLRTGEPIIINDDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEP 125 (148)
T ss_dssp ETTSHHHHHTS-EEESCCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESST
T ss_pred hHHHHHHhcCceEEEeCccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCC
Confidence 4445558899999999 1111111122233333499999975 2 8999999765
No 103
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=46.60 E-value=12 Score=36.13 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC--CCCChh---chHHHHHHHHHHHHH
Q 007527 444 SERRQRGKLNERFVILKSMVPSV--SKFDKV---SILDDTIEYVQELER 487 (600)
Q Consensus 444 ~ER~RR~kin~~f~~LrslvP~~--~K~dKa---sIL~daI~YIk~Lq~ 487 (600)
.||.|-.++++.|.-|++|+|+. .++.+. .|=.+-|....+||.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~ 77 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQK 77 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHH
Confidence 68999999999999999999987 333222 233344444555554
No 104
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.62 E-value=98 Score=23.99 Aligned_cols=39 Identities=13% Similarity=0.024 Sum_probs=28.8
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEeeecCcEE
Q 007527 545 QIEIKCP---WREGMLLEIMDAISNLHLYSHRFNHPPIEAFY 583 (600)
Q Consensus 545 ~I~I~C~---~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~ 583 (600)
+|.|.+. .+++.+.+|+++|.+.++.+.-++.+..+..+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~i 44 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISI 44 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEE
Confidence 4566664 57889999999999999999877654433333
No 105
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=45.32 E-value=40 Score=27.95 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=29.5
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC
Q 007527 547 EIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE 580 (600)
Q Consensus 547 ~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d 580 (600)
-+..++++|.|.+||..+...++.++++.+-...
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~ 37 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSR 37 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 3445789999999999999999999999988754
No 106
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.15 E-value=83 Score=27.53 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
..|-+..++++|.|.+||..+...++.++++.+-..
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~ 50 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPS 50 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC
Confidence 455566688999999999999999999999988864
No 107
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=44.10 E-value=89 Score=26.68 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=38.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEee
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVST 591 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~ 591 (600)
.|.+.-.+++|+|.+|..++..-|..+.+.++.. ..++..+|+-+..
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~ 52 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC 52 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC
Confidence 5778888999999999999999988888877774 3467777777553
No 108
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.06 E-value=48 Score=26.79 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=33.5
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec---CcEEEEEEEEeec
Q 007527 547 EIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI---EAFYLLLSKVSTE 592 (600)
Q Consensus 547 ~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~---dg~~~lt~kV~~~ 592 (600)
+|.=|.++|-|.++++.|.+ +..|+.++-... ...+.+.+.+...
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~ 49 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR 49 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH
Confidence 56678999999999999999 999988776653 2345555555543
No 109
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=41.69 E-value=95 Score=24.16 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEE
Q 007527 552 WREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSK 588 (600)
Q Consensus 552 ~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~k 588 (600)
.+.|.+.+|+++|.+.++.|..+..+. ..+.+++.
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t~~--~~is~~v~ 46 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPTSE--NSVTLYLD 46 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEecCC--CEEEEEEe
Confidence 567899999999999999999985433 44444443
No 110
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=38.97 E-value=1.3e+02 Score=24.67 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=26.4
Q ss_pred EEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEe
Q 007527 544 VQIEIKC---PWREGMLLEIMDAISNLHLYSHRFNH 576 (600)
Q Consensus 544 v~I~I~C---~~r~glL~~Im~aL~~L~LdV~sa~s 576 (600)
++|.|.+ ...+|.+.+|+++|.+.++.|.....
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 3566644 45689999999999999999988854
No 111
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=38.87 E-value=94 Score=25.93 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=36.7
Q ss_pred cceeEEEeeCCeEEEEEEcCCCC------ChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 532 ADNINVSINEKDVQIEIKCPWRE------GMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 532 ~~~VeV~i~~~dv~I~I~C~~r~------glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
...|.+++.++.+.|+|.+.... .-+..+-++|...|+.+..++++..
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 46788888999999999998753 2377899999999999998887754
No 112
>PRK06382 threonine dehydratase; Provisional
Probab=38.78 E-value=98 Score=34.12 Aligned_cols=53 Identities=23% Similarity=0.125 Sum_probs=43.2
Q ss_pred eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee-----ecCcEEEEEEEEeec
Q 007527 540 NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP-----PIEAFYLLLSKVSTE 592 (600)
Q Consensus 540 ~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS-----~~dg~~~lt~kV~~~ 592 (600)
.+..+.|.|.-+.++|.|.+|.+.|.+.+..|+++... ...+...+++.|++.
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 46678899999999999999999999999999988764 234556677777775
No 113
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=37.44 E-value=91 Score=37.14 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=40.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-CcEEEEEEEEee
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-EAFYLLLSKVST 591 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-dg~~~lt~kV~~ 591 (600)
-.+.|.|.-.+|+|+|.+|+++|-+.+..|.++++... ++++.+.+.++.
T Consensus 626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v 676 (701)
T COG0317 626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV 676 (701)
T ss_pred eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE
Confidence 35788888899999999999999999999999999885 455555544443
No 114
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.36 E-value=86 Score=37.89 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=47.8
Q ss_pred EEEeeCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEeec
Q 007527 536 NVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 536 eV~i~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~~~ 592 (600)
.++...+...|-|.|+.++++++.|..++...|++|+.||+-+ .||..+-|+-|...
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~ 734 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP 734 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC
Confidence 3444556688888999999999999999999999999999875 68888888777644
No 115
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.12 E-value=1.7e+02 Score=22.52 Aligned_cols=40 Identities=8% Similarity=0.024 Sum_probs=28.7
Q ss_pred EEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEeeecCcEE
Q 007527 544 VQIEIKCP---WREGMLLEIMDAISNLHLYSHRFNHPPIEAFY 583 (600)
Q Consensus 544 v~I~I~C~---~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~ 583 (600)
++|.|.+. ...+.+.+|+++|.+.++.+.-+.-+..+..+
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~i 44 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNI 44 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceE
Confidence 35566664 56789999999999999999777654433333
No 116
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.83 E-value=84 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=33.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee---cCcEEEEEEEEee
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP---IEAFYLLLSKVST 591 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~---~dg~~~lt~kV~~ 591 (600)
+.++.|.=|.++|-|.+++++|- +-.|..+.-.. ..+.+.+.++++.
T Consensus 1 e~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 1 EALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred CeEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 35788899999999999999999 44555443333 3445666666655
No 117
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.64 E-value=1.5e+02 Score=24.77 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=30.7
Q ss_pred EEEEEE---cCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEE
Q 007527 544 VQIEIK---CPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSK 588 (600)
Q Consensus 544 v~I~I~---C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~k 588 (600)
++|.|. .+.++|.+.+|+++|.+.++.|-.+..+. ..+.+++.
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s~--~~iSftv~ 47 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSE--ISVALTLD 47 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeecC--CEEEEEEe
Confidence 355653 35678999999999999999999986533 33444443
No 118
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.41 E-value=1.5e+02 Score=25.18 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=30.6
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEE
Q 007527 545 QIEIKC---PWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSK 588 (600)
Q Consensus 545 ~I~I~C---~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~k 588 (600)
+|.|.. +..+|.+.+|+++|.+.++.|-.+..+. ..+.++++
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~qs~--~sISftV~ 47 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSE--VSISLTLD 47 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEecC--CEEEEEEE
Confidence 566655 4578999999999999999999986533 33444443
No 119
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=34.24 E-value=1.3e+02 Score=32.68 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=42.6
Q ss_pred eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-----cCcEEEEEEEEeec
Q 007527 540 NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-----IEAFYLLLSKVSTE 592 (600)
Q Consensus 540 ~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-----~dg~~~lt~kV~~~ 592 (600)
.+..+.|.|.=+.++|.|.+|++.|.+.+..|+++.... ..+...+++.|++.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~ 359 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR 359 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC
Confidence 567789999999999999999999999999999886552 23566666776664
No 120
>PRK08198 threonine dehydratase; Provisional
Probab=33.94 E-value=1.5e+02 Score=32.47 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=42.5
Q ss_pred eCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-----cCcEEEEEEEEeec
Q 007527 540 NEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-----IEAFYLLLSKVSTE 592 (600)
Q Consensus 540 ~~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-----~dg~~~lt~kV~~~ 592 (600)
.+..+.+.|.=+.++|.|.+|++.|.+.+..|..+.... ..+...+++.|++.
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~ 381 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR 381 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC
Confidence 467789999999999999999999999999888877653 24566666666653
No 121
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=32.66 E-value=1.8e+02 Score=23.71 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=27.9
Q ss_pred EEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEeeecC
Q 007527 544 VQIEIKC---PWREGMLLEIMDAISNLHLYSHRFNHPPIE 580 (600)
Q Consensus 544 v~I~I~C---~~r~glL~~Im~aL~~L~LdV~sa~sS~~d 580 (600)
++|.|.. ....+.+.+|+++|.+.++.+...+.+..+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 3566643 356789999999999999999877655333
No 122
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=31.80 E-value=13 Score=43.45 Aligned_cols=62 Identities=16% Similarity=0.318 Sum_probs=50.8
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhccCCCC-----CCCChhchHHHHHHHHHHHHHHHHHHHHHH
Q 007527 435 EETATNHVKSERRQRGKLNERFVILKSMVPSV-----SKFDKVSILDDTIEYVQELERKVKELESCR 496 (600)
Q Consensus 435 ~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~-----~K~dKasIL~daI~YIk~Lq~~v~~Le~~~ 496 (600)
...+..|+-+|.+||..+.-.|..|-+++-+. .|+.++.-+..+++||.-++.....+.++-
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 35688999999999999999999999988765 567788889999999988877665554443
No 123
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=30.31 E-value=51 Score=23.63 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhc
Q 007527 445 ERRQRGKLNERFVILKS 461 (600)
Q Consensus 445 ER~RR~kin~~f~~Lrs 461 (600)
=|+||+.++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37899999999999985
No 124
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=30.21 E-value=2.1e+02 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=24.0
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEE
Q 007527 545 QIEIKCP---WREGMLLEIMDAISNLHLYSHRF 574 (600)
Q Consensus 545 ~I~I~C~---~r~glL~~Im~aL~~L~LdV~sa 574 (600)
.|.|... ..+|++.+++.+|.+.++.|...
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~ 35 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQT 35 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEE
Confidence 4555554 57899999999999999999633
No 125
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=30.08 E-value=1.3e+02 Score=28.18 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=39.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.|.|.-++++|-|..+..+|.+.|+.+-..++.-.+.|-.++.-|..+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~ 52 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP 52 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh
Confidence 578888999999999999999999999888887766665555555544
No 126
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=28.41 E-value=1.6e+02 Score=29.43 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=42.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCc------EEEEEEEEeeccC
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEA------FYLLLSKVSTEDQ 594 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg------~~~lt~kV~~~~~ 594 (600)
+.|+|.-+.|+|++.+|-++|-+.++.|...++-+... .|...+.|..+.-
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~ 152 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS 152 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC
Confidence 67888899999999999999999999999988886542 6777777776643
No 127
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=28.01 E-value=1.7e+02 Score=30.98 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=41.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeecc
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTED 593 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~~ 593 (600)
....+.+.||.+.|+.+.|-..|-+.|..+++++--.. .|.|+.+.....+.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~ 59 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEG 59 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCC
Confidence 34788999999999999999999999999988766642 46777776665543
No 128
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=27.85 E-value=1.6e+02 Score=29.02 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=39.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEeec
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVSTE 592 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~~ 592 (600)
.|.|.-.+++|+|.+|...|...|+.+.+.++.. ..|.-.+++-|..+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~ 53 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGD 53 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECC
Confidence 5778889999999999999999999999988876 44665666666654
No 129
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=27.64 E-value=1.6e+02 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEee
Q 007527 551 PWREGMLLEIMDAISNLHLYSHRFNHP 577 (600)
Q Consensus 551 ~~r~glL~~Im~aL~~L~LdV~sa~sS 577 (600)
+.++|.+.+|+++|.+.++.+..+..+
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 677899999999999999999766544
No 130
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.59 E-value=1.2e+02 Score=25.46 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=27.3
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 550 CPWREGMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 550 C~~r~glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
-++++|.|.+||..++..++.++++.+-..
T Consensus 7 l~~~~g~L~~iL~~f~~~~inl~~IeSRP~ 36 (74)
T cd04929 7 LKNEVGGLAKALKLFQELGINVVHIESRKS 36 (74)
T ss_pred cCCCCcHHHHHHHHHHHCCCCEEEEEeccC
Confidence 478899999999999999999999988864
No 131
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=27.22 E-value=1.1e+02 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCeEEEEEEcC----CCCChHHHHHHHHHhCCCeEEEEE
Q 007527 541 EKDVQIEIKCP----WREGMLLEIMDAISNLHLYSHRFN 575 (600)
Q Consensus 541 ~~dv~I~I~C~----~r~glL~~Im~aL~~L~LdV~sa~ 575 (600)
++-..|.|..+ ...|++.+|..+|.+.++.|..++
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 44567888887 378999999999999999998887
No 132
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.51 E-value=2.8e+02 Score=20.90 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=25.9
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEee
Q 007527 545 QIEIKC---PWREGMLLEIMDAISNLHLYSHRFNHP 577 (600)
Q Consensus 545 ~I~I~C---~~r~glL~~Im~aL~~L~LdV~sa~sS 577 (600)
+|.|.+ ...++.+.+|+++|.+.++.+..++.+
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 355554 245789999999999999999888654
No 133
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.31 E-value=2.7e+02 Score=23.22 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEe
Q 007527 551 PWREGMLLEIMDAISNLHLYSHRFNH 576 (600)
Q Consensus 551 ~~r~glL~~Im~aL~~L~LdV~sa~s 576 (600)
+..+|.+.+|+++|.+.++.|-.+..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 45689999999999999999999965
No 134
>PRK06635 aspartate kinase; Reviewed
Probab=25.63 E-value=1.9e+02 Score=31.63 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=38.8
Q ss_pred EeeCCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEeeecC-cEEEEEEEEe
Q 007527 538 SINEKDVQIEIKC-PWREGMLLEIMDAISNLHLYSHRFNHPPIE-AFYLLLSKVS 590 (600)
Q Consensus 538 ~i~~~dv~I~I~C-~~r~glL~~Im~aL~~L~LdV~sa~sS~~d-g~~~lt~kV~ 590 (600)
...++-++|.|.+ ..++|.+.+|+++|.+.++.|..++.|... |...+++-|.
T Consensus 257 ~~~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~ 311 (404)
T PRK06635 257 AFDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP 311 (404)
T ss_pred EecCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc
Confidence 4566677888776 357899999999999999999988766444 3444444443
No 135
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=25.28 E-value=2.9e+02 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=26.2
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEe
Q 007527 545 QIEIKCP---WREGMLLEIMDAISNLHLYSHRFNH 576 (600)
Q Consensus 545 ~I~I~C~---~r~glL~~Im~aL~~L~LdV~sa~s 576 (600)
.|.|.+. ..+|.+.+|+++|.+.++.|-.+..
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4555554 4689999999999999999999865
No 136
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.20 E-value=2.4e+02 Score=25.84 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI 579 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~ 579 (600)
+.|-+..++++|.|.+||..+...++.++++.+-..
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~ 77 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPS 77 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcC
Confidence 344444588999999999999999999999998875
No 137
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=22.85 E-value=3.4e+02 Score=20.45 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=25.9
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEee
Q 007527 545 QIEIKC---PWREGMLLEIMDAISNLHLYSHRFNHP 577 (600)
Q Consensus 545 ~I~I~C---~~r~glL~~Im~aL~~L~LdV~sa~sS 577 (600)
.|.|.+ +..++++.+|+++|.+.++.|...+.+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 345544 346789999999999999999888754
No 138
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.27 E-value=1.5e+02 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 475 LDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 475 L~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
+..||+-|.-|+.++++|+.++..+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999999999998865553
No 139
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=22.01 E-value=1.3e+02 Score=34.12 Aligned_cols=46 Identities=33% Similarity=0.361 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 441 HVKSERRQRGKLNERFVILKSMVPSVSKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 441 h~~~ER~RR~kin~~f~~LrslvP~~~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
....|.|||+ |+-+..|.+=|-..++-. ++|+++|++||..+..|-
T Consensus 261 ~SAQESRrkK--keYid~LE~rv~~~taeN------------qeL~kkV~~Le~~N~sLl 306 (472)
T KOG0709|consen 261 RSAQESRRKK--KEYIDGLESRVSAFTAEN------------QELQKKVEELELSNRSLL 306 (472)
T ss_pred hhhHHHHHhH--hhHHHHHhhhhhhcccCc------------HHHHHHHHHHhhccHHHH
Confidence 3455666665 667777766554443322 578888888887776554
No 140
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.92 E-value=2.4e+02 Score=22.49 Aligned_cols=33 Identities=3% Similarity=-0.082 Sum_probs=25.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeeecCcEEE
Q 007527 552 WREGMLLEIMDAISNLHLYSHRFNHPPIEAFYL 584 (600)
Q Consensus 552 ~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~ 584 (600)
+..|++.+++++|.+.++.|.-+.-++.+-.+.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis 44 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNIS 44 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEE
Confidence 346899999999999999997776555544443
No 141
>smart00338 BRLZ basic region leucin zipper.
Probab=21.71 E-value=1.1e+02 Score=24.68 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 007527 479 IEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 479 I~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
-.||..|+.+++.|+.++..|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888888887765
No 142
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=21.41 E-value=3.1e+02 Score=23.98 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=36.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEe
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVS 590 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~ 590 (600)
.|.+.-.+++|+|.+|-..+...|+.+.+..++. ..|+-.+|+-+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 5778888999999999999988777777766664 456666777775
No 143
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=20.47 E-value=3.6e+02 Score=29.46 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=38.1
Q ss_pred EEeeCCeEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEE
Q 007527 537 VSINEKDVQIEIKC---PWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLL 586 (600)
Q Consensus 537 V~i~~~dv~I~I~C---~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt 586 (600)
|...++-++|.|.. ..+.|.+.+|+++|.+.++.|..+..+..+..+.++
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~ 306 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLT 306 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEE
Confidence 45677888999984 567899999999999999999888664333333333
Done!