Query 007527
Match_columns 600
No_of_seqs 294 out of 1257
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1E-15 3.4E-20 129.9 7.0 66 435-500 4-70 (82)
2 1nkp_A C-MYC, MYC proto-oncoge 99.5 4.2E-14 1.4E-18 121.4 7.1 67 434-500 3-72 (88)
3 1hlo_A Protein (transcription 99.5 3.7E-14 1.3E-18 119.6 6.5 68 433-500 8-77 (80)
4 1nkp_B MAX protein, MYC proto- 99.5 5.4E-14 1.9E-18 119.3 7.0 64 437-500 2-67 (83)
5 4h10_B Circadian locomoter out 99.4 9.4E-14 3.2E-18 114.4 5.8 60 434-493 5-65 (71)
6 1nlw_A MAD protein, MAX dimeri 99.4 5.1E-13 1.7E-17 112.8 8.0 63 438-500 2-67 (80)
7 1an4_A Protein (upstream stimu 99.4 7.8E-14 2.7E-18 113.0 2.5 54 437-490 5-64 (65)
8 4ati_A MITF, microphthalmia-as 99.4 4.1E-13 1.4E-17 121.3 7.1 61 436-496 26-90 (118)
9 4h10_A ARYL hydrocarbon recept 99.3 3.8E-13 1.3E-17 111.5 2.6 52 436-487 8-63 (73)
10 1a0a_A BHLH, protein (phosphat 99.3 2.1E-13 7.1E-18 110.1 1.0 53 438-490 3-62 (63)
11 3u5v_A Protein MAX, transcript 99.3 1.3E-12 4.4E-17 109.2 3.2 59 435-493 3-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.1 5.7E-11 2E-15 97.2 5.1 58 432-489 7-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 4.9E-10 1.7E-14 89.5 5.2 54 437-490 2-58 (60)
14 4f3l_A Mclock, circadian locom 98.7 6.5E-09 2.2E-13 109.4 5.5 53 436-488 11-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 3.2E-08 1.1E-12 105.3 4.7 54 435-488 11-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 5.5E-08 1.9E-12 78.9 1.4 45 443-487 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 2.3E-06 8E-11 72.1 6.5 49 449-497 4-56 (83)
18 4aya_A DNA-binding protein inh 97.8 2.9E-05 9.8E-10 67.4 5.7 49 443-491 31-82 (97)
19 1zpv_A ACT domain protein; str 95.9 0.032 1.1E-06 46.2 8.6 52 542-593 4-55 (91)
20 2nyi_A Unknown protein; protei 94.1 0.12 4.2E-06 49.5 8.1 50 543-592 5-54 (195)
21 1f5m_A GAF; CGMP binding, sign 93.9 0.027 9.2E-07 53.4 2.9 73 123-196 92-173 (180)
22 1u8s_A Glycine cleavage system 93.8 0.15 5.1E-06 48.4 7.9 50 543-592 6-55 (192)
23 2ko1_A CTR148A, GTP pyrophosph 93.1 0.29 1E-05 39.7 7.6 49 543-591 5-53 (88)
24 2nyi_A Unknown protein; protei 91.3 0.38 1.3E-05 46.0 7.1 51 542-592 92-148 (195)
25 1vhm_A Protein YEBR; structura 91.0 0.15 5.1E-06 49.2 4.0 73 124-197 88-168 (195)
26 3dba_A CONE CGMP-specific 3',5 91.0 0.095 3.3E-06 48.5 2.4 70 124-195 82-166 (180)
27 3mmh_A FRMSR, methionine-R-sul 89.6 0.13 4.6E-06 48.2 2.2 73 124-197 77-157 (167)
28 3rfb_A Putative uncharacterize 88.1 0.3 1E-05 46.3 3.5 74 124-198 77-158 (171)
29 3ksh_A Putative uncharacterize 86.9 0.27 9.4E-06 46.0 2.4 72 124-196 76-155 (160)
30 1u8s_A Glycine cleavage system 86.8 2.1 7E-05 40.4 8.5 51 542-592 92-150 (192)
31 2vjw_A GAF-B, GAF family prote 85.0 0.66 2.3E-05 41.8 3.9 48 124-179 55-107 (149)
32 3p96_A Phosphoserine phosphata 84.9 1.6 5.6E-05 45.8 7.5 51 542-592 11-61 (415)
33 2e4s_A CAMP and CAMP-inhibited 82.8 0.23 7.8E-06 44.8 -0.2 70 124-195 85-169 (189)
34 3e0y_A Conserved domain protei 81.8 1.1 3.9E-05 39.4 4.1 73 124-196 77-160 (181)
35 3n0v_A Formyltetrahydrofolate 80.4 4.2 0.00014 41.4 8.2 52 542-593 7-60 (286)
36 3obi_A Formyltetrahydrofolate 80.2 4.1 0.00014 41.5 8.0 52 542-593 5-58 (288)
37 3o1l_A Formyltetrahydrofolate 80.0 4.3 0.00015 41.8 8.1 51 542-592 21-73 (302)
38 3trc_A Phosphoenolpyruvate-pro 79.2 1.4 4.8E-05 38.5 3.7 71 124-194 72-153 (171)
39 3k2n_A Sigma-54-dependent tran 79.0 16 0.00054 32.0 10.8 123 10-194 19-158 (177)
40 3lou_A Formyltetrahydrofolate 78.8 4.3 0.00015 41.5 7.7 52 541-592 8-61 (292)
41 3nrb_A Formyltetrahydrofolate 75.1 7.3 0.00025 39.6 8.2 51 542-592 6-58 (287)
42 2w3g_A DOSS, two component sen 74.8 2.7 9.4E-05 35.8 4.3 71 125-195 57-138 (153)
43 1y7p_A Hypothetical protein AF 74.1 3.7 0.00013 40.4 5.4 49 543-591 4-57 (223)
44 2zmf_A CAMP and CAMP-inhibited 73.4 0.65 2.2E-05 41.5 -0.2 71 124-194 85-168 (189)
45 1mc0_A 3',5'-cyclic nucleotide 69.1 2.3 7.8E-05 42.9 2.8 71 124-196 245-331 (368)
46 3oov_A Methyl-accepting chemot 68.8 2.3 7.8E-05 37.0 2.4 69 127-195 71-155 (169)
47 3ci6_A Phosphoenolpyruvate-pro 68.4 2.8 9.7E-05 36.0 2.9 72 124-195 74-156 (171)
48 2f1f_A Acetolactate synthase i 67.7 8.3 0.00028 36.1 6.0 49 544-592 4-54 (164)
49 2pc6_A Probable acetolactate s 65.3 8.4 0.00029 36.1 5.6 49 544-592 5-55 (165)
50 3ibj_A CGMP-dependent 3',5'-cy 65.3 3.7 0.00013 46.2 3.7 72 123-196 244-331 (691)
51 3hcy_A Putative two-component 64.7 4.6 0.00016 34.9 3.5 54 128-181 53-115 (151)
52 1ykd_A Adenylate cyclase; GAF 62.6 3.6 0.00012 42.2 2.7 58 123-180 261-331 (398)
53 2fgc_A Acetolactate synthase, 59.8 24 0.0008 34.0 7.7 50 544-593 30-81 (193)
54 2wt7_A Proto-oncogene protein 55.3 26 0.00088 27.5 6.0 43 445-500 1-43 (63)
55 2re1_A Aspartokinase, alpha an 50.0 28 0.00097 31.8 6.4 54 537-590 19-74 (167)
56 2qyb_A Membrane protein, putat 49.2 6.1 0.00021 35.1 1.6 70 127-197 70-153 (181)
57 1mc0_A 3',5'-cyclic nucleotide 48.2 3.5 0.00012 41.5 -0.3 74 123-196 74-160 (368)
58 3bjc_A CGMP-specific 3',5'-cyc 44.9 4.6 0.00016 47.0 0.0 71 124-196 225-313 (878)
59 3ibj_A CGMP-dependent 3',5'-cy 44.4 4.1 0.00014 45.9 -0.5 68 123-191 75-155 (691)
60 2oqq_A Transcription factor HY 44.1 20 0.00068 26.2 3.2 21 480-500 3-23 (42)
61 2dt9_A Aspartokinase; protein- 43.4 40 0.0014 30.8 6.2 55 537-591 10-68 (167)
62 1ykd_A Adenylate cyclase; GAF 41.7 7 0.00024 39.9 0.8 56 124-179 75-143 (398)
63 2dtj_A Aspartokinase; protein- 38.5 61 0.0021 30.0 6.7 41 537-577 9-50 (178)
64 3he4_B Synzip5; heterodimeric 36.2 48 0.0017 23.8 4.1 25 475-499 5-29 (46)
65 2f06_A Conserved hypothetical 34.7 74 0.0025 27.9 6.4 45 546-590 75-119 (144)
66 1dh3_A Transcription factor CR 34.1 33 0.0011 26.2 3.4 21 480-500 22-42 (55)
67 1zme_C Proline utilization tra 32.5 35 0.0012 26.3 3.4 22 480-501 44-65 (70)
68 3s1t_A Aspartokinase; ACT doma 32.2 93 0.0032 29.0 6.9 56 537-592 10-69 (181)
69 3bjc_A CGMP-specific 3',5'-cyc 31.6 9.9 0.00034 44.2 0.0 55 124-180 407-477 (878)
70 2er8_A Regulatory protein Leu3 28.8 33 0.0011 26.7 2.7 21 480-500 49-69 (72)
71 3ab4_A Aspartokinase; aspartat 28.1 1.3E+02 0.0046 31.6 8.1 54 537-590 258-315 (421)
72 2f06_A Conserved hypothetical 28.1 1.1E+02 0.0039 26.7 6.4 42 545-586 8-51 (144)
73 1gd2_E Transcription factor PA 27.5 48 0.0016 26.8 3.4 21 479-499 28-48 (70)
74 3o5y_A Sensor protein; GAF dom 26.5 41 0.0014 30.5 3.3 72 124-196 54-137 (165)
75 2re1_A Aspartokinase, alpha an 26.5 1.3E+02 0.0043 27.4 6.6 39 537-575 97-138 (167)
76 2l5g_A GPS2 protein, G protein 23.7 1.1E+02 0.0037 21.8 4.1 31 469-499 4-34 (38)
77 1rwu_A Hypothetical UPF0250 pr 21.5 2.1E+02 0.0071 24.9 6.6 49 543-592 36-87 (109)
78 2dgc_A Protein (GCN4); basic d 21.4 75 0.0026 24.9 3.4 22 479-500 29-50 (63)
79 1xkm_B Distinctin chain B; por 21.1 81 0.0028 20.1 2.8 19 472-490 3-21 (26)
80 4go7_X Aspartokinase; transfer 20.8 1.9E+02 0.0066 27.5 6.9 56 537-592 29-88 (200)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.60 E-value=1e-15 Score=129.89 Aligned_cols=66 Identities=27% Similarity=0.477 Sum_probs=62.5
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhccCCCC-CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 435 EETATNHVKSERRQRGKLNERFVILKSMVPSV-SKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 435 ~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~-~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
...+.+|+.+||+||++||+.|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+++.|.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999998 9999999999999999999999999999998876
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=4.2e-14 Score=121.43 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=60.5
Q ss_pred chhhccchhHHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 434 AEETATNHVKSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 434 ~~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
....+.+|+..||+||.+||+.|..||++||.. .|++|++||.+||+||++|+.+.+.|+.+++.+.
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999986 6999999999999999999999998887776654
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=3.7e-14 Score=119.58 Aligned_cols=68 Identities=28% Similarity=0.465 Sum_probs=63.1
Q ss_pred cchhhccchhHHHHHHHHHHHHHHHHhhccCCCC--CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 433 EAEETATNHVKSERRQRGKLNERFVILKSMVPSV--SKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 433 ~~~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~--~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
.....+.+|+..||+||.+||+.|..||++||.. .|++|++||..||+||+.|++++++|+.+++.|.
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455689999999999999999999999999986 7999999999999999999999999999998775
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.47 E-value=5.4e-14 Score=119.32 Aligned_cols=64 Identities=30% Similarity=0.481 Sum_probs=59.7
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC--CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV--SKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~--~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
.+.+|+..||+||.+||+.|..||++||.. .|++|++||..||+||+.|+.++++|+.+++.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999975 8999999999999999999999999998888765
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.43 E-value=9.4e-14 Score=114.39 Aligned_cols=60 Identities=27% Similarity=0.429 Sum_probs=54.4
Q ss_pred chhhccchhHHHHHHHHHHHHHHHHhhccCCCC-CCCChhchHHHHHHHHHHHHHHHHHHH
Q 007527 434 AEETATNHVKSERRQRGKLNERFVILKSMVPSV-SKFDKVSILDDTIEYVQELERKVKELE 493 (600)
Q Consensus 434 ~~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~-~K~dKasIL~daI~YIk~Lq~~v~~Le 493 (600)
....+.+|+.+||+||++||++|..|++|||.. .|+||++||..||+||+.||.++.=|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345678999999999999999999999999975 799999999999999999999887554
No 6
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.40 E-value=5.1e-13 Score=112.76 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=58.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 438 ATNHVKSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 438 ~~~h~~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
+.+|+..||+||..||+.|..||++||.. .|.+|++||.+|++||+.|+.+.++|+.+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999965 7889999999999999999999999999988775
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=7.8e-14 Score=113.04 Aligned_cols=54 Identities=33% Similarity=0.518 Sum_probs=49.6
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCCC------CCChhchHHHHHHHHHHHHHHHH
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSVS------KFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~~------K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
.+.+|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++|+++++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999874 78999999999999999998653
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.38 E-value=4.1e-13 Score=121.29 Aligned_cols=61 Identities=26% Similarity=0.528 Sum_probs=52.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHHHHHHHHHHHHHH
Q 007527 436 ETATNHVKSERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQELERKVKELESCR 496 (600)
Q Consensus 436 ~~~~~h~~~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~Lq~~v~~Le~~~ 496 (600)
..+.+|+++||+||++||++|..|++|||.+ .|++|++||.+||+||++|+.+++.|+...
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999999987 378899999999999999999999998764
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.32 E-value=3.8e-13 Score=111.53 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=48.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHHHHH
Q 007527 436 ETATNHVKSERRQRGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQELER 487 (600)
Q Consensus 436 ~~~~~h~~~ER~RR~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~Lq~ 487 (600)
..+.+|+.+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999975 799999999999999999974
No 10
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.32 E-value=2.1e-13 Score=110.10 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=48.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhccCCCC-------CCCChhchHHHHHHHHHHHHHHHH
Q 007527 438 ATNHVKSERRQRGKLNERFVILKSMVPSV-------SKFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 438 ~~~h~~~ER~RR~kin~~f~~LrslvP~~-------~K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
+.+|..+||+||++||..|..|++|||+. +|.+||+||..||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999954 567799999999999999998653
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.27 E-value=1.3e-12 Score=109.20 Aligned_cols=59 Identities=29% Similarity=0.433 Sum_probs=48.5
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhccCCC---CCCC-ChhchHHHHHHHHHHHHHHHHHHH
Q 007527 435 EETATNHVKSERRQRGKLNERFVILKSMVPS---VSKF-DKVSILDDTIEYVQELERKVKELE 493 (600)
Q Consensus 435 ~~~~~~h~~~ER~RR~kin~~f~~LrslvP~---~~K~-dKasIL~daI~YIk~Lq~~v~~Le 493 (600)
.+.+.+|+..||+||.+||+.|..||.+||. ..|. .|++||..||+||+.|++++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999995 3555 688999999999999999999865
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.10 E-value=5.7e-11 Score=97.17 Aligned_cols=58 Identities=29% Similarity=0.433 Sum_probs=52.7
Q ss_pred ccchhhccchhHHHHHHHHHHHHHHHHhhccCCCC--CCCChhchHHHHHHHHHHHHHHH
Q 007527 432 LEAEETATNHVKSERRQRGKLNERFVILKSMVPSV--SKFDKVSILDDTIEYVQELERKV 489 (600)
Q Consensus 432 ~~~~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~--~K~dKasIL~daI~YIk~Lq~~v 489 (600)
......+..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.+
T Consensus 7 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999975 79999999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.97 E-value=4.9e-10 Score=89.46 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=49.2
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHHHHH
Q 007527 437 TATNHVKSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELERKVK 490 (600)
Q Consensus 437 ~~~~h~~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~~v~ 490 (600)
.+..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999975 689999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=6.5e-09 Score=109.43 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=42.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhccCC-CCCCCChhchHHHHHHHHHHHHHH
Q 007527 436 ETATNHVKSERRQRGKLNERFVILKSMVP-SVSKFDKVSILDDTIEYVQELERK 488 (600)
Q Consensus 436 ~~~~~h~~~ER~RR~kin~~f~~LrslvP-~~~K~dKasIL~daI~YIk~Lq~~ 488 (600)
..+.+|+.+||+||++||+.|..|++||| +..|+||++||..||.||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 34778999999999999999999999999 558999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.56 E-value=3.2e-08 Score=105.34 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=49.3
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhccCC----CCCCCChhchHHHHHHHHHHHHHH
Q 007527 435 EETATNHVKSERRQRGKLNERFVILKSMVP----SVSKFDKVSILDDTIEYVQELERK 488 (600)
Q Consensus 435 ~~~~~~h~~~ER~RR~kin~~f~~LrslvP----~~~K~dKasIL~daI~YIk~Lq~~ 488 (600)
...+.+|+.+||+||++||+.|..|++||| ...|+||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 344789999999999999999999999999 569999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.41 E-value=5.5e-08 Score=78.95 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHH
Q 007527 443 KSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELER 487 (600)
Q Consensus 443 ~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~ 487 (600)
..||+|+..||+-|..||.+||.. .|++|+.||.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 458899999999999999999976 789999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.19 E-value=2.3e-06 Score=72.08 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhccCCCC----CCCChhchHHHHHHHHHHHHHHHHHHHHHHH
Q 007527 449 RGKLNERFVILKSMVPSV----SKFDKVSILDDTIEYVQELERKVKELESCRA 497 (600)
Q Consensus 449 R~kin~~f~~LrslvP~~----~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~ 497 (600)
|..||++|..|..|||.. .|..|.+||..|++||++||+.++.+..+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 6889999999999999999988877665543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.76 E-value=2.9e-05 Score=67.37 Aligned_cols=49 Identities=27% Similarity=0.474 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC---CCCChhchHHHHHHHHHHHHHHHHH
Q 007527 443 KSERRQRGKLNERFVILKSMVPSV---SKFDKVSILDDTIEYVQELERKVKE 491 (600)
Q Consensus 443 ~~ER~RR~kin~~f~~LrslvP~~---~K~dKasIL~daI~YIk~Lq~~v~~ 491 (600)
..||.|-..||+-|..||.+||.. .|+.|+-+|.-||+||..|+.-+++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 346888889999999999999975 6899999999999999999987653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=95.89 E-value=0.032 Score=46.21 Aligned_cols=52 Identities=13% Similarity=0.327 Sum_probs=46.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeecc
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTED 593 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~~ 593 (600)
..+.|.|.|+.++|++.+|..+|.+.+..|.+++....++.+.+++.++.++
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~ 55 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE 55 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC
Confidence 3578999999999999999999999999999999988889888888887654
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.15 E-value=0.12 Score=49.48 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=45.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.+.|.|.|+.|+|+++.|..+|.++|+.|+.++..+..|.|.+++.|..+
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 57899999999999999999999999999999999888888778888754
No 21
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=93.91 E-value=0.027 Score=53.38 Aligned_cols=73 Identities=12% Similarity=0.260 Sum_probs=52.7
Q ss_pred eeecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCceEEEEeeCC------ceEeecccce---eccChhHHHHHH
Q 007527 123 FVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLH------GVVELGVTEL---VLEEPGFIQHIK 193 (600)
Q Consensus 123 ~~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lakTvvciP~~~------GVvELGSt~~---I~Ed~~lv~~vk 193 (600)
..|+.|+|+.|+|+.+|+++.+.+....... ..+..-.+.++|||+.. |||++.+.+. -.+|..+++.+-
T Consensus 92 ~~i~~g~Gi~G~aa~~g~~v~v~Dv~~dp~~-~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L~~la 170 (180)
T 1f5m_A 92 QMIQFGKGVCGTAASTKETQIVPDVNKYPGH-IACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLA 170 (180)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTTC-CCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred eeecCCCcchhhhhhcCCEEEeCCcccCccc-cccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHHHHHH
Confidence 3688999999999999999999877643221 12222234999999876 9999998753 334667777666
Q ss_pred HHh
Q 007527 194 TSF 196 (600)
Q Consensus 194 ~~F 196 (600)
...
T Consensus 171 ~~~ 173 (180)
T 1f5m_A 171 KLI 173 (180)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.79 E-value=0.15 Score=48.41 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=45.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
.+.|.|.|+.|+|++.+|..+|.+.|+.|..++..+..|.|.+++.|..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~ 55 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 55 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC
Confidence 47899999999999999999999999999999999888888888888654
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=93.10 E-value=0.29 Score=39.72 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=41.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEee
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVST 591 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~ 591 (600)
.+.|+|.+++++|+|.+|..+|.+.++.+.++.....++.+.+.+.++.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 4678999999999999999999999999999999876665455555544
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=91.26 E-value=0.38 Score=45.97 Aligned_cols=51 Identities=10% Similarity=0.230 Sum_probs=44.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecC------cEEEEEEEEeec
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIE------AFYLLLSKVSTE 592 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~d------g~~~lt~kV~~~ 592 (600)
..+.|.|.|+.|+|++.+|-.+|-++|+.|..++..+.. ++|++++.+..+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~ 148 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP 148 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC
Confidence 347899999999999999999999999999999998765 788888777654
No 25
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=91.04 E-value=0.15 Score=49.17 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=52.8
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCceEEEEeeC-----CceEeecccce---eccChhHHHHHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHL-----HGVVELGVTEL---VLEEPGFIQHIKTS 195 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lakTvvciP~~-----~GVvELGSt~~---I~Ed~~lv~~vk~~ 195 (600)
.|+.|+|+.|+|+.+|+++.+.+...... +.......+.++|||+. -|||++.+... -.+|..+++.+-..
T Consensus 88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~-~~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L~~lA~~ 166 (195)
T 1vhm_A 88 RIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 166 (195)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCTTTCTT-CCCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EecCCCChHHHHHhcCCEEEECCcccCcc-hhhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999988765321 11222234599999976 29999998654 23467777777666
Q ss_pred hc
Q 007527 196 FM 197 (600)
Q Consensus 196 F~ 197 (600)
..
T Consensus 167 ia 168 (195)
T 1vhm_A 167 LE 168 (195)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=90.98 E-value=0.095 Score=48.55 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=49.4
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccc------cCCceEEEEeeC-----CceEeeccccee----ccChhH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRS------LLAKTVVCFPHL-----HGVVELGVTELV----LEEPGF 188 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~------~lakTvvciP~~-----~GVvELGSt~~I----~Ed~~l 188 (600)
.++.|+|+.|+++.+|+++.+.+..... .|.+. ...+.++|+|.. =|||+|.+...- .+|..+
T Consensus 82 ~~~~~~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~l 159 (180)
T 3dba_A 82 VFPLDIGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEV 159 (180)
T ss_dssp EECTTSSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHH
Confidence 5688999999999999999998765432 23221 224599999976 399999876432 346666
Q ss_pred HHHHHHH
Q 007527 189 IQHIKTS 195 (600)
Q Consensus 189 v~~vk~~ 195 (600)
++.+-..
T Consensus 160 L~~lA~~ 166 (180)
T 3dba_A 160 FKKYLNF 166 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 27
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=89.61 E-value=0.13 Score=48.20 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=52.5
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCceEEEEeeC-----CceEeecccce---eccChhHHHHHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHL-----HGVVELGVTEL---VLEEPGFIQHIKTS 195 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lakTvvciP~~-----~GVvELGSt~~---I~Ed~~lv~~vk~~ 195 (600)
.|+.|+|+.|+|+.+|+++.+.+......+ ..+....+..+|||+. =|||++.|.+. -.+|..|++.+-..
T Consensus 77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~p~~-~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~ 155 (167)
T 3mmh_A 77 RIPFGRGVCGQAWAKGGTVVVGDVDAHPDH-IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKI 155 (167)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC-CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EeccCCChHHHHHhCCcEEEECCcccCcch-hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999887653321 1223334589999975 48999988543 23567777776655
Q ss_pred hc
Q 007527 196 FM 197 (600)
Q Consensus 196 F~ 197 (600)
..
T Consensus 156 la 157 (167)
T 3mmh_A 156 LE 157 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=88.07 E-value=0.3 Score=46.26 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=55.9
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCceEEEEeeC-----CceEeecccce---eccChhHHHHHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHL-----HGVVELGVTEL---VLEEPGFIQHIKTS 195 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lakTvvciP~~-----~GVvELGSt~~---I~Ed~~lv~~vk~~ 195 (600)
.++.|+|+.|+|+.+|+++-+.+......+ ..+....+..+|||+. =|||.+.|... =.+|..+++.+-..
T Consensus 77 ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~-i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 155 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIVGDVTTYLNY-ISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAI 155 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEESCTTSCSSC-CCSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHhhCCEEEECCcccCccc-cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999988764322 1222334589999975 39999998543 24678888888877
Q ss_pred hcc
Q 007527 196 FME 198 (600)
Q Consensus 196 F~~ 198 (600)
...
T Consensus 156 la~ 158 (171)
T 3rfb_A 156 LLE 158 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 29
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=86.87 E-value=0.27 Score=46.00 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=52.5
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCceEEEEeeC-----CceEeeccccee---ccChhHHHHHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHL-----HGVVELGVTELV---LEEPGFIQHIKTS 195 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lakTvvciP~~-----~GVvELGSt~~I---~Ed~~lv~~vk~~ 195 (600)
.++.|+|+.|+|+.+|+++-+.+......+ ..+....+..+|||+. =|||.+.|...- .+|..+++.+-..
T Consensus 76 ri~~GeGv~G~aa~~~~~i~V~Dv~~~p~~-i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 154 (160)
T 3ksh_A 76 HIPIGKGVCGTAVSERRTQVVADVHQFKGH-IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKI 154 (160)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC-CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHhhCCEEEECCcccCccc-cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999887754322 1223334589999975 399999985432 3566777776655
Q ss_pred h
Q 007527 196 F 196 (600)
Q Consensus 196 F 196 (600)
+
T Consensus 155 l 155 (160)
T 3ksh_A 155 I 155 (160)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=86.80 E-value=2.1 Score=40.37 Aligned_cols=51 Identities=6% Similarity=0.107 Sum_probs=43.1
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--------CcEEEEEEEEeec
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--------EAFYLLLSKVSTE 592 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--------dg~~~lt~kV~~~ 592 (600)
....|.|.|+.++|++.+|.++|.+.++.|..+...+. .++|++++.+..+
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~ 150 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD 150 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC
Confidence 34789999999999999999999999999999888764 3578887777654
No 31
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=85.04 E-value=0.66 Score=41.80 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=38.3
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCceEEEEeeC-----CceEeeccc
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHL-----HGVVELGVT 179 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lakTvvciP~~-----~GVvELGSt 179 (600)
.|+.|+|+.|+++.+|+++++.+..... -.+.++|||.. -|||.+...
T Consensus 55 ~~~~~~g~~g~v~~~g~~v~v~d~~~d~--------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIPVQDNAIGQAFRDRAPRRLDVLDGPG--------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEESSSSHHHHHHHHCCCEEESCCCTTS--------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCCHHHHHhhcCceEEecCcccCC--------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 5778999999999999999998765322 23489999976 389998876
No 32
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=84.94 E-value=1.6 Score=45.78 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=46.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEeec
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
..+.|.|.|+.|+|+...|...|-++|..|+.++-+...|.|++.+.|+.+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~ 61 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP 61 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec
Confidence 457899999999999999999999999999999999999999988888755
No 33
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=82.80 E-value=0.23 Score=44.79 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=48.7
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCccc------ccCCceEEEEeeC-----CceEeeccccee----ccChhH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSR------SLLAKTVVCFPHL-----HGVVELGVTELV----LEEPGF 188 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R------~~lakTvvciP~~-----~GVvELGSt~~I----~Ed~~l 188 (600)
.|+.|.|+.|+++.+|+++++.+..... .|.+ ..-.++++|||+. -|||.+++...- .+|..|
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~l 162 (189)
T 2e4s_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADP--RFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENN 162 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGST--TCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHH
T ss_pred EeeCCCcHHHHHHHhCCEEEecCCCcCc--ccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHHH
Confidence 6778999999999999999998654422 2221 1223489999975 489999887643 346666
Q ss_pred HHHHHHH
Q 007527 189 IQHIKTS 195 (600)
Q Consensus 189 v~~vk~~ 195 (600)
++.+-..
T Consensus 163 l~~la~~ 169 (189)
T 2e4s_A 163 FKMFAVF 169 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 34
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=81.81 E-value=1.1 Score=39.44 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=46.9
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCC-ccc--ccCCceEEEEeeC-----CceEeeccccee---ccChhHHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKV-FSR--SLLAKTVVCFPHL-----HGVVELGVTELV---LEEPGFIQHI 192 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-~~R--~~lakTvvciP~~-----~GVvELGSt~~I---~Ed~~lv~~v 192 (600)
.++.|.|+.|+++.+|+++++.+........ ++. ..-.+.++|||+. -|||.+++.+.- .+|..+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~~l 156 (181)
T 3e0y_A 77 RIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSII 156 (181)
T ss_dssp EEETTTSSHHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred cccCCCCeeeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHHHH
Confidence 5677899999999999999997655422111 111 1122399999975 389999887532 3455566555
Q ss_pred HHHh
Q 007527 193 KTSF 196 (600)
Q Consensus 193 k~~F 196 (600)
-..+
T Consensus 157 a~~~ 160 (181)
T 3e0y_A 157 ANLI 160 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 35
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=80.36 E-value=4.2 Score=41.42 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee--ecCcEEEEEEEEeecc
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP--PIEAFYLLLSKVSTED 593 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS--~~dg~~~lt~kV~~~~ 593 (600)
..+.|.|.|+.|+|+...|-..|-+.|+.+..++.+ ...|.|++.+.+..+.
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~ 60 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD 60 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC
Confidence 347899999999999999999999999999999888 4568888777776543
No 36
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=80.19 E-value=4.1 Score=41.55 Aligned_cols=52 Identities=8% Similarity=0.141 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee--ecCcEEEEEEEEeecc
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP--PIEAFYLLLSKVSTED 593 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS--~~dg~~~lt~kV~~~~ 593 (600)
..+.|.|.|+.|+|+...|-..|-+.|+.+..++.. ...|.|++.+.+..++
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~ 58 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAA 58 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCC
Confidence 457899999999999999999999999999999875 3568888777776544
No 37
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=79.97 E-value=4.3 Score=41.76 Aligned_cols=51 Identities=12% Similarity=0.389 Sum_probs=44.6
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeec
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTE 592 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~ 592 (600)
..+.|.|.|+.|+|+...|-..|-+.|+.+..++.+.. .|.|++.+.+..+
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~ 73 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD 73 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC
Confidence 45789999999999999999999999999999988864 6888888877654
No 38
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=79.24 E-value=1.4 Score=38.54 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=46.2
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCC-cc--cccCCceEEEEeeC-----CceEeeccccee---ccChhHHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKV-FS--RSLLAKTVVCFPHL-----HGVVELGVTELV---LEEPGFIQHI 192 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-~~--R~~lakTvvciP~~-----~GVvELGSt~~I---~Ed~~lv~~v 192 (600)
.++.|.|+.|+++.+++++++.+........ ++ +..-.++++|+|+. -|||.+++.+.- .+|..+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~~l 151 (171)
T 3trc_A 72 RLKFGEGLIGLVGEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEAFCVTL 151 (171)
T ss_dssp EEETTCHHHHHHHHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHHHHHHH
T ss_pred eecCCCChhhHHHhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHHHHHHH
Confidence 5677899999999999999997654422111 11 11223499999975 489999886531 2344555544
Q ss_pred HH
Q 007527 193 KT 194 (600)
Q Consensus 193 k~ 194 (600)
-.
T Consensus 152 a~ 153 (171)
T 3trc_A 152 AI 153 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=79.02 E-value=16 Score=32.00 Aligned_cols=123 Identities=11% Similarity=-0.018 Sum_probs=73.5
Q ss_pred ccchHHHHHHHHHhhcCCCcEEEEEeecCCCCCccEEEccccccCCccccccccccccChhhhhhhhHHHHHHHHhhhcc
Q 007527 10 KRVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQRSEQLRELYESLSA 89 (600)
Q Consensus 10 ~~~~~~Lq~~L~~~~~~~~WtYAIFWq~s~~~~gvL~WgDGy~~g~~k~~k~~~~~e~~~~~~~~~r~~~lreL~~sl~~ 89 (600)
-.+.+.|+..++.+.+-.+..++.+|-+......+..|..+|..+..
T Consensus 19 ~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~--------------------------------- 65 (177)
T 3k2n_A 19 RDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELP--------------------------------- 65 (177)
T ss_dssp CSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCC---------------------------------
T ss_pred cCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCC---------------------------------
Confidence 35667788888888888888888888876544334444333322110
Q ss_pred CCCCcccccCCCCcCCCCCCcCcceeeeeEeeeeeecCCCCccceeecCCCcEeeeCCCCCCC-CCcc--------cccC
Q 007527 90 GESNPQAASKRPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADS-KVFS--------RSLL 160 (600)
Q Consensus 90 g~~~~~~~~~~~~~al~~e~~td~Ewfyl~~ms~~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~-~~~~--------R~~l 160 (600)
..+ ....++.+.|+.|+++.++.++.+ +....+. ..++ +..-
T Consensus 66 ------------------~~~----------~~~~~~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
T 3k2n_A 66 ------------------EQL----------RHQTRSIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELG 116 (177)
T ss_dssp ------------------STT----------CCSEEECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHT
T ss_pred ------------------chh----------hcccCCccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcC
Confidence 000 001455688999999999999988 4433221 1122 1112
Q ss_pred CceEEEEeeC-----CceEeeccccee---ccChhHHHHHHH
Q 007527 161 AKTVVCFPHL-----HGVVELGVTELV---LEEPGFIQHIKT 194 (600)
Q Consensus 161 akTvvciP~~-----~GVvELGSt~~I---~Ed~~lv~~vk~ 194 (600)
.++++|+|.. -|||.+++...- .+|..|++.+-.
T Consensus 117 ~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~ 158 (177)
T 3k2n_A 117 MRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSGVSS 158 (177)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred ceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 3499999975 489999886542 234455554443
No 40
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=78.84 E-value=4.3 Score=41.45 Aligned_cols=52 Identities=10% Similarity=0.273 Sum_probs=44.3
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee--ecCcEEEEEEEEeec
Q 007527 541 EKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP--PIEAFYLLLSKVSTE 592 (600)
Q Consensus 541 ~~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS--~~dg~~~lt~kV~~~ 592 (600)
...+.|.|.|+.|+|+...|-..|-+.|+.+..++.. ...|.|++.+.+..+
T Consensus 8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 61 (292)
T 3lou_A 8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT 61 (292)
T ss_dssp CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc
Confidence 3457899999999999999999999999999999888 356888877776654
No 41
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=75.14 E-value=7.3 Score=39.64 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=43.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEee--ecCcEEEEEEEEeec
Q 007527 542 KDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHP--PIEAFYLLLSKVSTE 592 (600)
Q Consensus 542 ~dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS--~~dg~~~lt~kV~~~ 592 (600)
..+.|.|.|+.|+|+...|-..|-+.|+.+..++.. ...|.|++.+.+..+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 58 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP 58 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC
Confidence 457899999999999999999999999999998875 356888877777654
No 42
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=74.83 E-value=2.7 Score=35.75 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=45.8
Q ss_pred ecCCCCccceeecCCCcEeeeCCCCCCCC-Ccc-cccCCceEEEEeeC-----CceEeecccce----eccChhHHHHHH
Q 007527 125 FNIGEGLPGRALANNQPIWLCNAQYADSK-VFS-RSLLAKTVVCFPHL-----HGVVELGVTEL----VLEEPGFIQHIK 193 (600)
Q Consensus 125 f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~-~~~-R~~lakTvvciP~~-----~GVvELGSt~~----I~Ed~~lv~~vk 193 (600)
++.+.|+.|+++.+++++++.+....... .++ +..-.++++|+|+. -|||.+++... -.+|..+++.+-
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la 136 (153)
T 2w3g_A 57 LPKGLGVIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLVQALA 136 (153)
T ss_dssp CCCSCTHHHHHHHSCSCEEESSGGGSTTCCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHhcCCcEEecCcccCchhcCCCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHH
Confidence 34578999999999999999875432211 111 22234499999975 38999988654 234555555554
Q ss_pred HH
Q 007527 194 TS 195 (600)
Q Consensus 194 ~~ 195 (600)
..
T Consensus 137 ~~ 138 (153)
T 2w3g_A 137 AA 138 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=74.10 E-value=3.7 Score=40.44 Aligned_cols=49 Identities=14% Similarity=0.011 Sum_probs=38.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec-----CcEEEEEEEEee
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI-----EAFYLLLSKVST 591 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~-----dg~~~lt~kV~~ 591 (600)
.+.|.|.+.+|+|+|.+|+.+|.+.+..+.+++.+.. ++...+++.+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d 57 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG 57 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence 5789999999999999999999999999999999985 567777755543
No 44
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=73.37 E-value=0.65 Score=41.47 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=45.6
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccc----cCCceEEEEeeC-----CceEeecccce----eccChhHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRS----LLAKTVVCFPHL-----HGVVELGVTEL----VLEEPGFIQ 190 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~----~lakTvvciP~~-----~GVvELGSt~~----I~Ed~~lv~ 190 (600)
.|+.|.|+.|+++.+|+++++.+............ ...+.++|+|.. -|||.+..... -.+|..|++
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~ll~ 164 (189)
T 2zmf_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFK 164 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHHH
T ss_pred ccCCCccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHHHH
Confidence 57889999999999999999987654332211111 223489999975 37777754332 234555665
Q ss_pred HHHH
Q 007527 191 HIKT 194 (600)
Q Consensus 191 ~vk~ 194 (600)
.+-.
T Consensus 165 ~lA~ 168 (189)
T 2zmf_A 165 MFAV 168 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 45
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=69.14 E-value=2.3 Score=42.88 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=49.0
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCccccc------CCceEEEEeeC-C-----ceEeeccccee----ccChh
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSL------LAKTVVCFPHL-H-----GVVELGVTELV----LEEPG 187 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~------lakTvvciP~~-~-----GVvELGSt~~I----~Ed~~ 187 (600)
.++.|.|+.|+++.+|+++++.+..... .|.+.. ..++++|+|+. . |||.+++...- .+|..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ 322 (368)
T 1mc0_A 245 RIPADQGIAGHVATTGQILNIPDAYAHP--LFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDED 322 (368)
T ss_dssp EECTTSHHHHHHHHHCCCEEESCSTTCT--TCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHH
T ss_pred eecCCCceeeeehhhCCEEEecCcccCc--ccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHH
Confidence 6788899999999999999998765432 222221 23599999975 3 89999887542 34555
Q ss_pred HHHHHHHHh
Q 007527 188 FIQHIKTSF 196 (600)
Q Consensus 188 lv~~vk~~F 196 (600)
|++.+-...
T Consensus 323 ll~~la~~~ 331 (368)
T 1mc0_A 323 LATAFSIYC 331 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554443
No 46
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=68.80 E-value=2.3 Score=37.04 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=46.2
Q ss_pred CCCCccceeecCCCcEeeeCCCCCCCCC-------cccccCCceEEEEeeC-----CceEeecccce----eccChhHHH
Q 007527 127 IGEGLPGRALANNQPIWLCNAQYADSKV-------FSRSLLAKTVVCFPHL-----HGVVELGVTEL----VLEEPGFIQ 190 (600)
Q Consensus 127 ~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-------~~R~~lakTvvciP~~-----~GVvELGSt~~----I~Ed~~lv~ 190 (600)
.|.|+.|+++.+++++++.+........ +.+..-.+.++|+|+. -|||.+++... -.+|..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~ 150 (169)
T 3oov_A 71 QRGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIK 150 (169)
T ss_dssp GGGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHH
T ss_pred cccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHH
Confidence 3789999999999999998665433211 1122334499999976 39999998642 234566666
Q ss_pred HHHHH
Q 007527 191 HIKTS 195 (600)
Q Consensus 191 ~vk~~ 195 (600)
.+-..
T Consensus 151 ~~a~~ 155 (169)
T 3oov_A 151 LFADQ 155 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 47
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=68.36 E-value=2.8 Score=35.99 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=45.2
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCC-cc--cccCCceEEEEeeC-----CceEeeccccee---ccChhHHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKV-FS--RSLLAKTVVCFPHL-----HGVVELGVTELV---LEEPGFIQHI 192 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-~~--R~~lakTvvciP~~-----~GVvELGSt~~I---~Ed~~lv~~v 192 (600)
.++.+.|+.|+++.+++++++.+........ .+ +..-.++++|||+. -|||.+++...- .+|..+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~l 153 (171)
T 3ci6_A 74 SLQLSEGLVGLVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFLVTL 153 (171)
T ss_dssp EEETTSHHHHHHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred eeeccCCeehhhhccCceEEecCCCcCcchhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4567889999999999999997654322111 11 22223499999975 489999987542 2344555554
Q ss_pred HHH
Q 007527 193 KTS 195 (600)
Q Consensus 193 k~~ 195 (600)
-..
T Consensus 154 a~~ 156 (171)
T 3ci6_A 154 CAQ 156 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 48
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=67.65 E-value=8.3 Score=36.14 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=41.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeec
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTE 592 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~ 592 (600)
-.|.|...+++|+|.+|...|.+.|+.+.++.+... .++..+++.|+.+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d 54 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD 54 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc
Confidence 468888999999999999999999999998887643 3778888888744
No 49
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=65.33 E-value=8.4 Score=36.15 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=40.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeec--CcEEEEEEEEeec
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPI--EAFYLLLSKVSTE 592 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~--dg~~~lt~kV~~~ 592 (600)
-.|.|...+++|+|.+|...|...|+.+.++.+... .|+..+++.|+.+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d 55 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP 55 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc
Confidence 468888999999999999999999999988877643 4788888888744
No 50
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=65.27 E-value=3.7 Score=46.21 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=49.6
Q ss_pred eeecCCCCccceeecCCCcEeeeCCCCCCCCCcccc------cCCceEEEEeeC-C-----ceEeeccccee----ccCh
Q 007527 123 FVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRS------LLAKTVVCFPHL-H-----GVVELGVTELV----LEEP 186 (600)
Q Consensus 123 ~~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~------~lakTvvciP~~-~-----GVvELGSt~~I----~Ed~ 186 (600)
..++.|.|+.|+++.+|+++++.+...... |.+. +..+.++|+|+. + |||.+.+...- .+|.
T Consensus 244 ~~~~~~~gi~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp EEEETTSHHHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTT
T ss_pred eeccCCCCHHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHH
Confidence 367889999999999999999987654321 2221 224499999965 2 89999876532 4577
Q ss_pred hHHHHHHHHh
Q 007527 187 GFIQHIKTSF 196 (600)
Q Consensus 187 ~lv~~vk~~F 196 (600)
.+++.+-...
T Consensus 322 ~ll~~lA~~~ 331 (691)
T 3ibj_A 322 DLATAFSIYC 331 (691)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665443
No 51
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=64.74 E-value=4.6 Score=34.87 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=32.9
Q ss_pred CCCccceeecCCCcEeeeCCCCCCCC-Cc---ccccCCceEEEEeeC-----CceEeecccce
Q 007527 128 GEGLPGRALANNQPIWLCNAQYADSK-VF---SRSLLAKTVVCFPHL-----HGVVELGVTEL 181 (600)
Q Consensus 128 G~GlpG~a~~~g~~~Wl~~~~~~~~~-~~---~R~~lakTvvciP~~-----~GVvELGSt~~ 181 (600)
|.|..|+++.+|+++++.+....... .+ .+..-.+.++|||+. -|||.+.+...
T Consensus 53 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~ 115 (151)
T 3hcy_A 53 GHSPWITGANEPEPIFVENVDDAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRP 115 (151)
T ss_dssp BCCSCC---CCCCCEEESCGGGSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSC
T ss_pred CCCchhhhhhcCCcEEEeChhhCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCC
Confidence 67889999999999999876543211 01 111123489999975 37888876643
No 52
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=62.58 E-value=3.6 Score=42.16 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=41.0
Q ss_pred eeecCCCCccceeecCCCcEeee-CCCCCCCCCccc------ccCCceEEEEeeCC------ceEeecccc
Q 007527 123 FVFNIGEGLPGRALANNQPIWLC-NAQYADSKVFSR------SLLAKTVVCFPHLH------GVVELGVTE 180 (600)
Q Consensus 123 ~~f~~G~GlpG~a~~~g~~~Wl~-~~~~~~~~~~~R------~~lakTvvciP~~~------GVvELGSt~ 180 (600)
..++.|.|+.|+++.+|+++++. +..........+ .+..+.++|||+.. |||.+.+..
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 261 LRVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEEETTSHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eeccCCCchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 36788999999999999999998 654322111111 12245899999874 899998765
No 53
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=59.84 E-value=24 Score=34.04 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=41.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee--cCcEEEEEEEEeecc
Q 007527 544 VQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP--IEAFYLLLSKVSTED 593 (600)
Q Consensus 544 v~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~--~dg~~~lt~kV~~~~ 593 (600)
-.|.|.-++++|.|.+|...|...|+.+.+..+.. ..++..+++.|..++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e 81 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD 81 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH
Confidence 57788889999999999999999999999887753 347888888887553
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.34 E-value=26 Score=27.45 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527 445 ERRQRGKLNERFVILKSMVPSVSKFDKVSILDDTIEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 445 ER~RR~kin~~f~~LrslvP~~~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
||++|.+...+..+-|+ =..-..||..|+.+++.|+.++..|.
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777665 13456788888888888888887765
No 55
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=49.97 E-value=28 Score=31.85 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=39.4
Q ss_pred EEeeCCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEeee-cCcEEEEEEEEe
Q 007527 537 VSINEKDVQIEIKC-PWREGMLLEIMDAISNLHLYSHRFNHPP-IEAFYLLLSKVS 590 (600)
Q Consensus 537 V~i~~~dv~I~I~C-~~r~glL~~Im~aL~~L~LdV~sa~sS~-~dg~~~lt~kV~ 590 (600)
|....+.++|.|.. +.++|.+.+|+++|.+.++.|..+..+. .+|...+++-|.
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 45567778888884 7899999999999999999998875542 246555555554
No 56
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=49.23 E-value=6.1 Score=35.09 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=45.2
Q ss_pred CCCCccceeecCCCcEeeeCCCCCCCCCcccc----cCCceEEEEeeC------CceEeecc-cce---eccChhHHHHH
Q 007527 127 IGEGLPGRALANNQPIWLCNAQYADSKVFSRS----LLAKTVVCFPHL------HGVVELGV-TEL---VLEEPGFIQHI 192 (600)
Q Consensus 127 ~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~----~lakTvvciP~~------~GVvELGS-t~~---I~Ed~~lv~~v 192 (600)
.|+|+.|+++.+|+++.+.+...... ...+. .-.+.++|||+. -|||.+.+ ... -.+|..|++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~l 148 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFVNDTQYMTK-PLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESL 148 (181)
T ss_dssp CTTSHHHHHHHHTSCEEESCGGGCSC-HHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHH
T ss_pred CCCCchhhhhhcCCCEEecChhcCCc-hhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 37899999999999999976543221 11111 113489999974 48999988 443 23455666666
Q ss_pred HHHhc
Q 007527 193 KTSFM 197 (600)
Q Consensus 193 k~~F~ 197 (600)
-..+.
T Consensus 149 a~~~a 153 (181)
T 2qyb_A 149 AGQLA 153 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 57
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=48.16 E-value=3.5 Score=41.53 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=47.4
Q ss_pred eeecCCCCccceeecCCCcEeeeCCCCCCCCCccc--ccCCceEEEEeeC-C------ceEeecccce----eccChhHH
Q 007527 123 FVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSR--SLLAKTVVCFPHL-H------GVVELGVTEL----VLEEPGFI 189 (600)
Q Consensus 123 ~~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R--~~lakTvvciP~~-~------GVvELGSt~~----I~Ed~~lv 189 (600)
..++.|.|+.|.++.+|+++++.+........+.. ..-.++++|+|+. + |||.+.+... -.+|..++
T Consensus 74 ~~~~~~~g~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l 153 (368)
T 1mc0_A 74 VSFPLTMGRLGQVVEDKQCIQLKDLTSDDVQQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVI 153 (368)
T ss_dssp EEEESSSSSHHHHHHHCCCEEGGGSCHHHHHHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHH
T ss_pred eeeccccCHHHHHHhcCCeEEecccccccccccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHHHHH
Confidence 35788999999999999999997765321100111 1224589999975 4 7888776543 23455666
Q ss_pred HHHHHHh
Q 007527 190 QHIKTSF 196 (600)
Q Consensus 190 ~~vk~~F 196 (600)
+.+-..+
T Consensus 154 ~~la~~~ 160 (368)
T 1mc0_A 154 QHCFHYT 160 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 58
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=44.92 E-value=4.6 Score=47.04 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccc------cCCceEEEEeeCC------ceEeecccce------eccC
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRS------LLAKTVVCFPHLH------GVVELGVTEL------VLEE 185 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~------~lakTvvciP~~~------GVvELGSt~~------I~Ed 185 (600)
.|+.|.|+.|.++.+|+++++.+..... .|.+. .-.++++|+|+.. |||.+.+... -.+|
T Consensus 225 ~~p~~~gi~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D 302 (878)
T 3bjc_A 225 RLEWNKGIVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKD 302 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeCCccHHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHH
Confidence 5888999999999999999998765422 12211 1244899999764 8898886542 2345
Q ss_pred hhHHHHHHHHh
Q 007527 186 PGFIQHIKTSF 196 (600)
Q Consensus 186 ~~lv~~vk~~F 196 (600)
..+++.+-...
T Consensus 303 ~~lL~~lA~~~ 313 (878)
T 3bjc_A 303 EKDFAAYLAFC 313 (878)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 59
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=44.45 E-value=4.1 Score=45.86 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=43.5
Q ss_pred eeecCCCCccceeecCCCcEeeeCCCCCCCCCc--ccccCCceEEEEeeC-C------ceEeecccce----eccChhHH
Q 007527 123 FVFNIGEGLPGRALANNQPIWLCNAQYADSKVF--SRSLLAKTVVCFPHL-H------GVVELGVTEL----VLEEPGFI 189 (600)
Q Consensus 123 ~~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~--~R~~lakTvvciP~~-~------GVvELGSt~~----I~Ed~~lv 189 (600)
..++.| |+.|+++.+|+++++.+......... ......++++|+|+. + |||.+..... -.+|..++
T Consensus 75 ~~~p~~-Gi~g~v~~~~~pv~i~d~~~~~~~~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL 153 (691)
T 3ibj_A 75 VSFPLT-GCLGQVVEDKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVI 153 (691)
T ss_dssp EEEECC-SSSHHHHHHCCCEEGGGSCHHHHHHHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHHHHH
T ss_pred eecCCc-cHHHHHHHHCCeEEeccchhccccccccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHHHHH
Confidence 367889 99999999999999977653210000 011224599999976 4 7888664322 23455555
Q ss_pred HH
Q 007527 190 QH 191 (600)
Q Consensus 190 ~~ 191 (600)
+.
T Consensus 154 ~~ 155 (691)
T 3ibj_A 154 QH 155 (691)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=44.09 E-value=20 Score=26.21 Aligned_cols=21 Identities=48% Similarity=0.781 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007527 480 EYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 480 ~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
.|+.+|+.++++|+.++..|+
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 489999999999998888776
No 61
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=43.41 E-value=40 Score=30.80 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=39.1
Q ss_pred EEeeCCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEeeec---CcEEEEEEEEee
Q 007527 537 VSINEKDVQIEIKC-PWREGMLLEIMDAISNLHLYSHRFNHPPI---EAFYLLLSKVST 591 (600)
Q Consensus 537 V~i~~~dv~I~I~C-~~r~glL~~Im~aL~~L~LdV~sa~sS~~---dg~~~lt~kV~~ 591 (600)
|....+.++|.|.. +.++|.+.+|+.+|.+.++.|..+..+.. +|...+++-|..
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~ 68 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK 68 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence 34567778888876 67889999999999999988877655432 344445554443
No 62
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=41.66 E-value=7 Score=39.95 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=39.7
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCC-CCccc------ccCCceEEEEeeC--C----ceEeeccc
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADS-KVFSR------SLLAKTVVCFPHL--H----GVVELGVT 179 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~-~~~~R------~~lakTvvciP~~--~----GVvELGSt 179 (600)
.++.|.|+.|+++.+|+++++.+....+. ..|.+ ..-.++++|||+. + |||.+.+.
T Consensus 75 ~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 46789999999999999999987754321 12222 1234589999975 2 78888765
No 63
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=38.45 E-value=61 Score=29.97 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=32.2
Q ss_pred EEeeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEee
Q 007527 537 VSINEKDVQIEIK-CPWREGMLLEIMDAISNLHLYSHRFNHP 577 (600)
Q Consensus 537 V~i~~~dv~I~I~-C~~r~glL~~Im~aL~~L~LdV~sa~sS 577 (600)
|....+.++|.|. -+.++|.+.+|++.|.+.++.|-.+..+
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 4556778888884 4789999999999999999666655444
No 64
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.18 E-value=48 Score=23.76 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007527 475 LDDTIEYVQELERKVKELESCRAKL 499 (600)
Q Consensus 475 L~daI~YIk~Lq~~v~~Le~~~~~l 499 (600)
+.+--+||++|+++..+|..-++.+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 4566789999999998888777654
No 65
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=34.71 E-value=74 Score=27.92 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=32.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEeeecCcEEEEEEEEe
Q 007527 546 IEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVS 590 (600)
Q Consensus 546 I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~~dg~~~lt~kV~ 590 (600)
|-+.-+.++|.+.+|+++|.+.|+.+...-++..++...+.+.++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~ 119 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS 119 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC
Confidence 555667999999999999999999997654442344444445543
No 66
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=34.12 E-value=33 Score=26.23 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007527 480 EYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 480 ~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
.||..|+.+|..|+.++..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999988775
No 67
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.52 E-value=35 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 007527 480 EYVQELERKVKELESCRAKLEA 501 (600)
Q Consensus 480 ~YIk~Lq~~v~~Le~~~~~l~d 501 (600)
.||..|+.+++.||..+..|+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999887764
No 68
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=32.22 E-value=93 Score=28.98 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=39.3
Q ss_pred EEeeCCeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEee-ec--CcEEEEEEEEeec
Q 007527 537 VSINEKDVQIEIKC-PWREGMLLEIMDAISNLHLYSHRFNHP-PI--EAFYLLLSKVSTE 592 (600)
Q Consensus 537 V~i~~~dv~I~I~C-~~r~glL~~Im~aL~~L~LdV~sa~sS-~~--dg~~~lt~kV~~~ 592 (600)
|....+.++|.|.. +.++|.+.+|+++|.+.++.|..+.-+ .. +|...+++-|..+
T Consensus 10 Ia~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~ 69 (181)
T 3s1t_A 10 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 69 (181)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh
Confidence 34566777787764 578999999999999999988876432 22 4555555555443
No 69
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=31.60 E-value=9.9 Score=44.19 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcccc---------cCCceEEEEeeC-C------ceEeecccc
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRS---------LLAKTVVCFPHL-H------GVVELGVTE 180 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~---------~lakTvvciP~~-~------GVvELGSt~ 180 (600)
.++.|.|+.|+++.+|+++++.+..... .|.+. +-.++++|+|+. . |||+|.+..
T Consensus 407 ~~p~~~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~ 477 (878)
T 3bjc_A 407 ANKINYMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKM 477 (878)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccchhhhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcC
Confidence 5778899999999999999998765322 22222 224589999975 3 788886643
No 70
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.82 E-value=33 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007527 480 EYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 480 ~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
.||..|+++|+.|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999987653
No 71
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=28.07 E-value=1.3e+02 Score=31.57 Aligned_cols=54 Identities=6% Similarity=0.105 Sum_probs=40.5
Q ss_pred EEeeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEeeec---CcEEEEEEEEe
Q 007527 537 VSINEKDVQIEIK-CPWREGMLLEIMDAISNLHLYSHRFNHPPI---EAFYLLLSKVS 590 (600)
Q Consensus 537 V~i~~~dv~I~I~-C~~r~glL~~Im~aL~~L~LdV~sa~sS~~---dg~~~lt~kV~ 590 (600)
|....+.++|.|. .+.++|.+.+|+++|.+.++.|..+.-++. +|...+++-|.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 4567888899998 578899999999999999999988743333 45444555444
No 72
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.06 E-value=1.1e+02 Score=26.69 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEeee-cC-cEEEEE
Q 007527 545 QIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPP-IE-AFYLLL 586 (600)
Q Consensus 545 ~I~I~C~~r~glL~~Im~aL~~L~LdV~sa~sS~-~d-g~~~lt 586 (600)
.|.|.-++++|.+.+|..+|.+.|+.|....... .+ |++.++
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~ 51 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI 51 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence 5666779999999999999999999998876543 23 444444
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.45 E-value=48 Score=26.76 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007527 479 IEYVQELERKVKELESCRAKL 499 (600)
Q Consensus 479 I~YIk~Lq~~v~~Le~~~~~l 499 (600)
-.||++|+.+|.+|+.....+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888887666544
No 74
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=26.53 E-value=41 Score=30.50 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=44.3
Q ss_pred eecCCCCccceeecCCCcEeeeCCCCCCCCCcc----cccCCceEEEEeeC-----CceEeeccccee---ccChhHHHH
Q 007527 124 VFNIGEGLPGRALANNQPIWLCNAQYADSKVFS----RSLLAKTVVCFPHL-----HGVVELGVTELV---LEEPGFIQH 191 (600)
Q Consensus 124 ~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~----R~~lakTvvciP~~-----~GVvELGSt~~I---~Ed~~lv~~ 191 (600)
.++.|.++.|+++.+|+++=+..+.. +...+. +....++++|+|.. -|||-|++...- .+|..+++.
T Consensus 54 ~ip~~~s~~~~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~ 132 (165)
T 3o5y_A 54 TIPKEQSLYWSALDQRQTIFRSLTDT-QDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQ 132 (165)
T ss_dssp EECSTTCHHHHHHHHTSCEEEESCCT-TCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHH
T ss_pred ccCCccCHHHHHHHhCCeEEEcCccc-ccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 45667788899999999985432221 111122 22334599999964 489999886542 245556655
Q ss_pred HHHHh
Q 007527 192 IKTSF 196 (600)
Q Consensus 192 vk~~F 196 (600)
+-+..
T Consensus 133 la~~~ 137 (165)
T 3o5y_A 133 LTDHL 137 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 75
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=26.47 E-value=1.3e+02 Score=27.37 Aligned_cols=39 Identities=5% Similarity=0.074 Sum_probs=32.1
Q ss_pred EEeeCCeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEE
Q 007527 537 VSINEKDVQIEIKCPW---REGMLLEIMDAISNLHLYSHRFN 575 (600)
Q Consensus 537 V~i~~~dv~I~I~C~~---r~glL~~Im~aL~~L~LdV~sa~ 575 (600)
|.+..+-+.|.|.... ++|.+.+++++|.+.++.|....
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 4445667788888864 88999999999999999998865
No 76
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.68 E-value=1.1e+02 Score=21.79 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=26.1
Q ss_pred CChhchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007527 469 FDKVSILDDTIEYVQELERKVKELESCRAKL 499 (600)
Q Consensus 469 ~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l 499 (600)
|..+.-|+++-+-|..|+.+++.|..++-+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456679999999999999999999988654
No 77
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=21.54 E-value=2.1e+02 Score=24.85 Aligned_cols=49 Identities=0% Similarity=0.024 Sum_probs=38.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhC---CCeEEEEEeeecCcEEEEEEEEeec
Q 007527 543 DVQIEIKCPWREGMLLEIMDAISNL---HLYSHRFNHPPIEAFYLLLSKVSTE 592 (600)
Q Consensus 543 dv~I~I~C~~r~glL~~Im~aL~~L---~LdV~sa~sS~~dg~~~lt~kV~~~ 592 (600)
+..++|.-+..+++...|.++++.. +.++ ...-|..+..+.+++.|...
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~ 87 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT 87 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC
Confidence 4677777788899999999999987 7777 66888888888777766554
No 78
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.40 E-value=75 Score=24.91 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 007527 479 IEYVQELERKVKELESCRAKLE 500 (600)
Q Consensus 479 I~YIk~Lq~~v~~Le~~~~~l~ 500 (600)
..|+..|+.+|+.|+.++..|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887777665
No 79
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=21.14 E-value=81 Score=20.15 Aligned_cols=19 Identities=42% Similarity=0.592 Sum_probs=15.3
Q ss_pred hchHHHHHHHHHHHHHHHH
Q 007527 472 VSILDDTIEYVQELERKVK 490 (600)
Q Consensus 472 asIL~daI~YIk~Lq~~v~ 490 (600)
+|-|-+|-+|+.+|.++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4667889999999988765
No 80
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=20.81 E-value=1.9e+02 Score=27.54 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=39.9
Q ss_pred EEeeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEe--ee-cCcEEEEEEEEeec
Q 007527 537 VSINEKDVQIEIK-CPWREGMLLEIMDAISNLHLYSHRFNH--PP-IEAFYLLLSKVSTE 592 (600)
Q Consensus 537 V~i~~~dv~I~I~-C~~r~glL~~Im~aL~~L~LdV~sa~s--S~-~dg~~~lt~kV~~~ 592 (600)
|....+.++|.|. .+.++|.+.+|+.+|.+.++.|--+.- |. .++...+++.+..+
T Consensus 29 Ia~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~ 88 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 88 (200)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred EEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence 4557778888886 478999999999999999988877643 32 24455555555443
Done!