Query 007528
Match_columns 600
No_of_seqs 100 out of 128
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 11:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.7 7.4E-18 1.6E-22 135.0 6.9 57 415-471 1-57 (57)
2 PF10595 UPF0564: Uncharacteri 55.7 16 0.00035 38.6 4.5 59 407-478 3-61 (356)
3 KOG2891 Surface glycoprotein [ 45.8 31 0.00066 37.2 4.7 47 412-461 381-428 (445)
4 PF11690 DUF3287: Protein of u 38.2 91 0.002 29.1 5.9 46 414-460 31-77 (109)
5 PF15236 CCDC66: Coiled-coil d 38.0 2.7E+02 0.0059 27.4 9.4 60 417-502 46-112 (157)
6 KOG0241 Kinesin-like protein [ 34.3 98 0.0021 38.4 6.8 66 430-503 592-657 (1714)
7 PF04696 Pinin_SDK_memA: pinin 24.8 5.3E+02 0.012 24.1 8.7 20 418-437 31-50 (131)
8 PRK13922 rod shape-determining 23.4 1.6E+02 0.0034 29.7 5.4 44 428-471 71-116 (276)
9 PF12214 TPX2_importin: Cell c 22.9 70 0.0015 31.9 2.7 24 517-540 110-133 (176)
10 PF07716 bZIP_2: Basic region 20.3 2.3E+02 0.0049 22.4 4.6 27 422-448 21-47 (54)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.72 E-value=7.4e-18 Score=135.04 Aligned_cols=57 Identities=42% Similarity=0.622 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccC
Q 007528 415 FRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQN 471 (600)
Q Consensus 415 frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPm 471 (600)
|+||+||++|++||+||+||++++|+++.+++++.+++++++|++|||+|+|||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=55.71 E-value=16 Score=38.60 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=33.3
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCccccCC
Q 007528 407 PCITSPFSFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGS 478 (600)
Q Consensus 407 ~~~~s~F~frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPsFY~e~ 478 (600)
.|+|-+|.| +.|-+++++--.+- ....|.+...++.+ +.|++.. --|+|+|+|.+=..|
T Consensus 3 iTVP~PF~m--t~RE~~kk~~~~~~---~~~~e~~~~~~~~~---~ee~e~~-----k~FrA~pVP~~v~lP 61 (356)
T PF10595_consen 3 ITVPKPFQM--TLREEEKKEKASKS---QSDLEQEKKELKKQ---EEEAECK-----KKFRANPVPAHVYLP 61 (356)
T ss_pred cCCCCCCCc--cHHHHhccchhhhh---HHHHHHHHHHHHHH---HHHHHhc-----cCCCCCCCCchhccc
Confidence 477888877 77877777511111 12333444444433 2344442 259999999965554
No 3
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.82 E-value=31 Score=37.23 Aligned_cols=47 Identities=34% Similarity=0.461 Sum_probs=35.2
Q ss_pred Cccc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Q 007528 412 PFSF-RSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQ 461 (600)
Q Consensus 412 ~F~f-rsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLR 461 (600)
-|-| +-+.|-++|+. |-|||++|.+.-..+||.+.++++.+-+--|+
T Consensus 381 kf~fekieareerrkq---keeeklk~e~qkikeleek~~eeedal~~all 428 (445)
T KOG2891|consen 381 KFEFEKIEAREERRKQ---KEEEKLKAEEQKIKELEEKIKEEEDALLLALL 428 (445)
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 56667777775 88999999999899999999888876554333
No 4
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=38.19 E-value=91 Score=29.12 Aligned_cols=46 Identities=11% Similarity=0.333 Sum_probs=34.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-HHHHHHHHh
Q 007528 414 SFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKD-KAQCDIKKV 460 (600)
Q Consensus 414 ~frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKE-e~EaeIKkL 460 (600)
.| +++..+....|++||+.++++.-.|+.+|..|-+. .-|-+++.|
T Consensus 31 ~~-~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~L 77 (109)
T PF11690_consen 31 HL-PSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRAL 77 (109)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 44555566689999999999999999999988665 345444444
No 5
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=38.03 E-value=2.7e+02 Score=27.43 Aligned_cols=60 Identities=27% Similarity=0.446 Sum_probs=36.1
Q ss_pred hHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCccccCCCCCchhhhHHH
Q 007528 417 SEERVAKRK-------EFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKKL 489 (600)
Q Consensus 417 sdERAeKRK-------EFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPsFY~e~~pp~~h~k~~~ 489 (600)
.+||..+|. .+-..||||-.-++.|+-. -+.+.+.+..+|.. .+-.|
T Consensus 46 ~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~er----r~~EE~~EE~Rl~r----------------------ere~~ 99 (157)
T PF15236_consen 46 IEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEER----RRREEEEEEERLAR----------------------EREEL 99 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHH----------------------HHHHH
Confidence 467887776 3556778877777766533 22222223333433 35578
Q ss_pred HHHHHHHHHhhhh
Q 007528 490 QEQAEHDIKKLRQ 502 (600)
Q Consensus 490 ~~~~~~~~~~~~~ 502 (600)
|.++|+|..+.++
T Consensus 100 q~~~E~E~~~~~~ 112 (157)
T PF15236_consen 100 QRQFEEEQRKQRE 112 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877664
No 6
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.33 E-value=98 Score=38.36 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCccccCCCCCchhhhHHHHHHHHHHHHhhhhc
Q 007528 430 KLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKKLQEQAEHDIKKLRQS 503 (600)
Q Consensus 430 KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPsFY~e~~pp~~h~k~~~~~~~~~~~~~~~~~ 503 (600)
..|||.-|.|.+ .+.=|.+|.+||+-|..--.|-|+|+.-..++.---+.++..-|+..-.-+|+|
T Consensus 592 heEeKr~ALE~Q--------r~~yE~~~eqLr~~lsPst~~~~~~~~~~a~~s~taq~k~~~WAeerdemf~~S 657 (1714)
T KOG0241|consen 592 HEEEKRSALEEQ--------RLMYERELEQLRQQLSPSTQPQPSGMDRLAYSSQTAQQKVTQWAEERDEMFRQS 657 (1714)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHhhcCCCCCCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 345555555544 345567899999999999999999765544433334444544444443334443
No 7
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=24.81 E-value=5.3e+02 Score=24.10 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 007528 418 EERVAKRKEFFQKLEEKNKA 437 (600)
Q Consensus 418 dERAeKRKEFy~KLEEK~~A 437 (600)
.+.+.||.+.-.||+||...
T Consensus 31 ~~~~~rR~eie~rleek~~~ 50 (131)
T PF04696_consen 31 TEQQKRRAEIEKRLEEKLKE 50 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998754
No 8
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.43 E-value=1.6e+02 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhh--hHHHHHHHHhhhccccccccC
Q 007528 428 FQKLEEKNKAKEAEKGQLERRSK--DKAQCDIKKVQQSTSFEAKQN 471 (600)
Q Consensus 428 y~KLEEK~~AkE~EK~qlqaKsK--Ee~EaeIKkLRKSL~FKAtPm 471 (600)
|..|.+.+...++|..+|++... ++-++|..+||+-|.++...-
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~ 116 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLD 116 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 55777777788877777777655 566778899999999887643
No 9
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=22.93 E-value=70 Score=31.86 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred cccccccCCCCCCCCCCCCCCCCC
Q 007528 517 TTKQIKKRPLCQPCSPKLGGKPRP 540 (600)
Q Consensus 517 ~~~~~kk~p~~~~~spklg~~~~~ 540 (600)
...+++-.++|.|.||++-.+.+-
T Consensus 110 ~~p~~~~~~~t~p~sp~~~~k~r~ 133 (176)
T PF12214_consen 110 GVPEKKVLPVTVPKSPAFALKNRV 133 (176)
T ss_pred CCccccccccCCCCChhhhccccc
Confidence 456778899999999999877653
No 10
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.30 E-value=2.3e+02 Score=22.41 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007528 422 AKRKEFFQKLEEKNKAKEAEKGQLERR 448 (600)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaK 448 (600)
++++++...||......+.+..+|+.+
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999998888653
Done!