Query 007528
Match_columns 600
No_of_seqs 100 out of 128
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2l_A Transcriptional repress 27.3 49 0.0017 25.4 3.1 12 452-463 5-16 (43)
2 4e29_A Chimeric WZZB chain len 21.6 1.4E+02 0.0048 29.5 6.0 46 420-465 115-160 (248)
3 3s9g_A Protein hexim1; cyclin 21.5 1.2E+02 0.004 27.1 4.9 35 428-462 39-79 (104)
4 3nmd_A CGMP dependent protein 20.7 1.6E+02 0.0054 24.7 5.2 37 430-468 31-68 (72)
5 1t2k_D Cyclic-AMP-dependent tr 16.7 2.5E+02 0.0086 21.7 5.4 40 422-462 18-57 (61)
6 1jnm_A Proto-oncogene C-JUN; B 16.0 2.4E+02 0.0083 21.9 5.1 41 422-463 18-58 (62)
7 3qh9_A Liprin-beta-2; coiled-c 14.7 1.9E+02 0.0064 24.9 4.4 47 418-464 15-77 (81)
8 3vp9_A General transcriptional 14.3 3.5E+02 0.012 23.5 6.1 60 410-469 20-89 (92)
9 2ve7_A Kinetochore protein HEC 11.5 1.6E+02 0.0056 29.4 3.7 41 421-462 166-206 (315)
10 1go4_E MAD1 (mitotic arrest de 10.5 2.7E+02 0.0092 24.5 4.2 44 427-471 13-58 (100)
No 1
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=27.26 E-value=49 Score=25.42 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhc
Q 007528 452 KAQCDIKKVQQS 463 (600)
Q Consensus 452 e~EaeIKkLRKS 463 (600)
+.|.-||+||..
T Consensus 5 ere~~i~~Lree 16 (43)
T 2l2l_A 5 ERERMIKQLKEE 16 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444555543
No 2
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=21.57 E-value=1.4e+02 Score=29.53 Aligned_cols=46 Identities=7% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccc
Q 007528 420 RVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTS 465 (600)
Q Consensus 420 RAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~ 465 (600)
+.+--.+|...++.|.+.++.+..+.+...+.+.+..|.+|+..|.
T Consensus 115 ~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~ 160 (248)
T 4e29_A 115 NQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALR 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456668899999999999999999999999999999999998654
No 3
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.45 E-value=1.2e+02 Score=27.09 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=28.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhh------hHHHHHHHHhhh
Q 007528 428 FQKLEEKNKAKEAEKGQLERRSK------DKAQCDIKKVQQ 462 (600)
Q Consensus 428 y~KLEEK~~AkE~EK~qlqaKsK------Ee~EaeIKkLRK 462 (600)
|..||.++.-.|.|-++|+..++ ++-+++|.+||-
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 77899999999988888887655 567788888874
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.67 E-value=1.6e+02 Score=24.73 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcc-cccc
Q 007528 430 KLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQST-SFEA 468 (600)
Q Consensus 430 KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL-~FKA 468 (600)
|+|| +.++++-...++.+. .+++++|+.||..| .|+.
T Consensus 31 K~eE-Lr~kd~~I~eLEk~L-~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 31 KIEE-LRQRDALIDELELEL-DQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 3444 778887777777654 45678999998777 4554
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=16.73 E-value=2.5e+02 Score=21.65 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007528 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQ 462 (600)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRK 462 (600)
+++++....||.+....+.+...|+... ..-..++..|++
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i-~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEV-TLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5677889999999999999999998853 344455666654
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=16.04 E-value=2.4e+02 Score=21.89 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 007528 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQS 463 (600)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKS 463 (600)
+++++....||.+....+.+...|+... ..-..++.+|++-
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v-~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTA-NMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5667888899999999999999998753 3334456666653
No 7
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=14.67 E-value=1.9e+02 Score=24.86 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHhh-------------hHHHHHHHHhhhcc
Q 007528 418 EERVAKRKEFFQK---LEEKNKAKEAEKGQLERRSK-------------DKAQCDIKKVQQST 464 (600)
Q Consensus 418 dERAeKRKEFy~K---LEEK~~AkE~EK~qlqaKsK-------------Ee~EaeIKkLRKSL 464 (600)
++|--+=..+++- |--|....|-|+.|.+.|.| +.++++|+.|.-.|
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444333344443 23355567888888887766 44555565555433
No 8
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=14.31 E-value=3.5e+02 Score=23.51 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCCcccchHH----HHHHHHHHHHHHHHHhhhHHH------HHHHHHHHhhhHHHHHHHHhhhccccccc
Q 007528 410 TSPFSFRSEE----RVAKRKEFFQKLEEKNKAKEA------EKGQLERRSKDKAQCDIKKVQQSTSFEAK 469 (600)
Q Consensus 410 ~s~F~frsdE----RAeKRKEFy~KLEEK~~AkE~------EK~qlqaKsKEe~EaeIKkLRKSL~FKAt 469 (600)
...|..-+.+ |..+.++|-.|+.--+...+. |..+-+.+-|+.=|+||.+||..|--+..
T Consensus 20 r~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 20 RQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp TTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455544444 555556777776544443332 22234456788889999999998865443
No 9
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=11.52 E-value=1.6e+02 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007528 421 VAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQ 462 (600)
Q Consensus 421 AeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRK 462 (600)
.+--.||..+|++..+++++|...|++. .++-+++|.+|++
T Consensus 166 ~~~~~e~~~~~~~~~n~~~~eie~L~~~-~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 166 DEMNAELQSKLKDLFNVDAFKLESLEAK-NRALNEQIARLEQ 206 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCTTHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3445588889999888888888887774 3444445666554
No 10
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=10.48 E-value=2.7e+02 Score=24.48 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH--hhhccccccccC
Q 007528 427 FFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKK--VQQSTSFEAKQN 471 (600)
Q Consensus 427 Fy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKk--LRKSL~FKAtPm 471 (600)
=|.+|-+++...+.|..+|.. .++.-|.+|-+ ||..++...|.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~-~~~~LE~~Le~~~l~Gd~~~~~TKV 58 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEE-EKRMLEAQLERRALQGDYDQSRTKV 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCCSCCCTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCccCee
Confidence 467888899999999999976 55566666644 555555444443
Done!