Query 007528
Match_columns 600
No_of_seqs 100 out of 128
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 04:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007528.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007528hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b8pa1 d.58.60.1 (A:54-292) C 17.1 90 0.0066 27.8 5.8 45 422-466 109-153 (239)
2 d3b8ma1 d.58.60.1 (A:64-330) E 15.4 1.1E+02 0.0081 27.4 6.0 43 422-464 139-181 (267)
3 d3b8oa1 d.58.60.1 (A:55-319) L 15.3 1.2E+02 0.0086 27.4 6.2 43 422-464 136-178 (265)
4 d1efub3 a.5.2.2 (B:1-54) Elong 7.9 51 0.0037 24.3 0.7 13 495-507 6-18 (54)
5 d1qs0a_ c.36.1.11 (A:) 2-oxois 7.0 2.7E+02 0.019 26.7 5.7 58 430-494 341-405 (407)
6 d1aipc1 a.5.2.2 (C:2-53) Elong 6.4 68 0.0049 23.4 0.7 13 495-507 4-16 (52)
7 d1sbza_ c.34.1.1 (A:) Probable 5.4 2.6E+02 0.019 23.4 4.1 43 456-506 133-175 (186)
8 d1a9xa1 a.92.1.1 (A:403-555) C 5.4 2.6E+02 0.019 23.2 4.1 17 451-467 105-121 (153)
9 d1w85a_ c.36.1.11 (A:) Pyruvat 5.0 6.5E+02 0.047 23.3 7.1 70 413-495 276-358 (365)
10 d1vkoa1 c.2.1.3 (A:11-314,A:42 4.7 1.8E+02 0.013 28.4 2.8 33 486-518 198-230 (397)
No 1
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=17.15 E-value=90 Score=27.85 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccc
Q 007528 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSF 466 (600)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~F 466 (600)
+--.+|...++.+.+..+++...++...|...+.+|.+|...|..
T Consensus 109 ~l~~~i~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~I 153 (239)
T d3b8pa1 109 ELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRY 153 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578889999999999999999999999999999999987653
No 2
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=15.44 E-value=1.1e+02 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcc
Q 007528 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQST 464 (600)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL 464 (600)
+--.+|...++.|.+..+.+...++.+.|++.+.+|.+|...|
T Consensus 139 ~l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al 181 (267)
T d3b8ma1 139 ESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSL 181 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788889999999999999999999999999999998654
No 3
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=15.27 E-value=1.2e+02 Score=27.38 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcc
Q 007528 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQST 464 (600)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL 464 (600)
+--.+|...++.+.+..+.+...+++..|...+-+|.+|...|
T Consensus 136 ~l~~~l~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL 178 (265)
T d3b8oa1 136 HLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQAL 178 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788899999999999999999999999999999999654
No 4
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.90 E-value=51 Score=24.31 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=10.9
Q ss_pred HHHHhhhhccCcc
Q 007528 495 HDIKKLRQSTGFK 507 (600)
Q Consensus 495 ~~~~~~~~~~~~~ 507 (600)
.+||+||..||.-
T Consensus 6 ~~iK~LR~~Tgag 18 (54)
T d1efub3 6 SLVKELRERTGAG 18 (54)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 5799999999974
No 5
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}
Probab=7.00 E-value=2.7e+02 Score=26.72 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=37.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCc-------cccCCCCCchhhhHHHHHHHH
Q 007528 430 KLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKD-------LCCGSHLPNAHMKKKLQEQAE 494 (600)
Q Consensus 430 KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPs-------FY~e~~pp~~h~k~~~~~~~~ 494 (600)
.|..+--.-|+|...++++.+++-++.++.-.+-..-...|.|. -|.+.|+ +|+||.+
T Consensus 341 ~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~-------~l~eQ~~ 405 (407)
T d1qs0a_ 341 HLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPD-------HLRRQRQ 405 (407)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCH-------HHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCHHHHHhhhccCCCH-------HHHHHHH
Confidence 34333334567778888888888888887765433323335554 5777777 7888854
No 6
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.35 E-value=68 Score=23.45 Aligned_cols=13 Identities=54% Similarity=0.616 Sum_probs=10.8
Q ss_pred HHHHhhhhccCcc
Q 007528 495 HDIKKLRQSTGFK 507 (600)
Q Consensus 495 ~~~~~~~~~~~~~ 507 (600)
..||+||+.||+-
T Consensus 4 elvK~LR~~Tga~ 16 (52)
T d1aipc1 4 ELIKKLREATGAG 16 (52)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 4689999999974
No 7
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}
Probab=5.40 E-value=2.6e+02 Score=23.39 Aligned_cols=43 Identities=5% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHHHhhhccccccccCCccccCCCCCchhhhHHHHHHHHHHHHhhhhccCc
Q 007528 456 DIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKKLQEQAEHDIKKLRQSTGF 506 (600)
Q Consensus 456 eIKkLRKSL~FKAtPmPsFY~e~~pp~~h~k~~~~~~~~~~~~~~~~~~~~ 506 (600)
-|.+|+.-=.+=.-|+|.||..+.. +++-.++-+.|+....|.
T Consensus 133 N~~~L~~~G~~i~pp~~g~y~~p~~--------~~dl~~~~v~r~ld~lgi 175 (186)
T d1sbza_ 133 NMLALSRMGVAMVPPMPAFYNHPET--------VDDIVHHVVARVLDQFGL 175 (186)
T ss_dssp HHHHHHTTTCEECCCCCCCTTCCCB--------HHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHCCcEEeCCChhhhcCCCC--------HHHHHHHHHHHHHHhcCC
Confidence 3566666556666789999987665 555555555555444443
No 8
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=5.38 E-value=2.6e+02 Score=23.24 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=9.8
Q ss_pred hHHHHHHHHhhhccccc
Q 007528 451 DKAQCDIKKVQQSTSFE 467 (600)
Q Consensus 451 Ee~EaeIKkLRKSL~FK 467 (600)
...|.+|+++|+.++.+
T Consensus 105 ~~~e~~vr~~R~~~~i~ 121 (153)
T d1a9xa1 105 GVREAEIRKLRDQYDLH 121 (153)
T ss_dssp TSCHHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHHHccCC
Confidence 34556666666666543
No 9
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.99 E-value=6.5e+02 Score=23.27 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=44.3
Q ss_pred cccchHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCc-------cccCCC
Q 007528 413 FSFRSEERVAKRKE------FFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKD-------LCCGSH 479 (600)
Q Consensus 413 F~frsdERAeKRKE------Fy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPs-------FY~e~~ 479 (600)
-.+|+.+--+.+++ |-.+|.++--.-++|..+++++.+++-++.++.-.+ .|.|+ -|.+.|
T Consensus 276 ~~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~~A~~------sP~P~~~~l~~~Vy~e~p 349 (365)
T d1w85a_ 276 TRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADE------TPKQKVTDLISIMFEELP 349 (365)
T ss_dssp ----CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHT------SCCCCHHHHHHTSCSSCC
T ss_pred cccCChHHHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCHHHHHhhhccCCC
Confidence 35666665555442 334444444456788888888888888888877655 45565 477877
Q ss_pred CCchhhhHHHHHHHHH
Q 007528 480 LPNAHMKKKLQEQAEH 495 (600)
Q Consensus 480 pp~~h~k~~~~~~~~~ 495 (600)
+ .|+||.+.
T Consensus 350 ~-------~l~eq~~~ 358 (365)
T d1w85a_ 350 F-------NLKEQYEI 358 (365)
T ss_dssp H-------HHHHHHHH
T ss_pred H-------HHHHHHHH
Confidence 6 78888754
No 10
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.70 E-value=1.8e+02 Score=28.44 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhhhhccCcccccCCCCCCcc
Q 007528 486 KKKLQEQAEHDIKKLRQSTGFKSISSANCPLTT 518 (600)
Q Consensus 486 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (600)
|-..-+|...||...++..|...+-+-||-=|.
T Consensus 198 k~e~ve~Ir~DIr~Fk~~~~ldrVVVlwtAsTE 230 (397)
T d1vkoa1 198 KLEHLEHIRADIRKFKQEHELECVIVLWTANTE 230 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCC
Confidence 445678888999999999999999999997654
Done!