Query 007529
Match_columns 600
No_of_seqs 305 out of 1278
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 5.2E-46 1.8E-50 380.3 13.4 258 273-592 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 3.9E-41 1.3E-45 348.6 14.4 251 274-585 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 1.3E-26 4.3E-31 243.2 9.7 225 273-586 4-254 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 2.5E-25 8.4E-30 226.7 7.1 136 395-572 82-224 (263)
5 3pmr_A Amyloid-like protein 1; 21.8 1.1E+02 0.0038 30.0 5.4 27 197-223 66-92 (219)
6 2akf_A Coronin-1A; coiled coil 16.8 90 0.0031 21.2 2.4 23 195-217 8-30 (32)
7 1v54_L VIIIA, cytochrome C oxi 15.6 1.1E+02 0.0038 22.9 3.0 37 85-123 5-42 (47)
8 1o7q_A N-acetyllactosaminide a 14.2 2.7E+02 0.0091 28.4 6.3 124 404-541 133-261 (289)
9 1iap_A Guanine nucleotide exch 11.7 14 0.00048 36.1 -3.7 37 285-322 17-56 (211)
10 3hzs_A Monofunctional glycosyl 10.2 3.7E+02 0.013 26.0 5.7 105 121-250 33-137 (209)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=5.2e-46 Score=380.32 Aligned_cols=258 Identities=16% Similarity=0.212 Sum_probs=181.9
Q ss_pred cceEEEecCC-c-cchhHHHHHhhhcCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCcceeeeeecccccccccCCchhh
Q 007529 273 YFHYVLASDN-V-LATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVL 350 (600)
Q Consensus 273 ~iHIa~~sDn-v-La~sVvI~Sil~Ns~~p~~i~FHIvtD~i~~~~m~~wf~ln~~~~a~vev~nie~F~~l~~~~~pvl 350 (600)
.||||+++|+ + .+++|+|+|++.|+++ ++++|||++++++.+..+.....-.-.+..|++..+.+
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~------------ 71 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD------------ 71 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH------------
Confidence 5899999996 5 4589999999999986 67999999999987764332211000112222211100
Q ss_pred hhhhccceeeeeecCCCcccccCCCCchhHHHHhhhccCCCCCchhhHHHhhcccccC-CCCeEEEEecCeeeecCCchh
Q 007529 351 EAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFP-SLNKVVFLDDDLVVQTDLSPL 429 (600)
Q Consensus 351 ~~le~~~~i~~~f~~~~~~~~~~~~~~p~~~~~~lk~~~~~y~S~~~y~Rf~LPeLLP-~ldKVLYLD~DvVV~~DLseL 429 (600)
+ ....++ ..+++|..+|+||++|+++| +++||||||+|+||++||++|
T Consensus 72 ---------------~--------------~~~~~~--~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L 120 (276)
T 3tzt_A 72 ---------------D--------------LFSFAK--VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDL 120 (276)
T ss_dssp -------------------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHH
T ss_pred ---------------H--------------HHhcCc--cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHH
Confidence 0 000111 12467999999999999999 699999999999999999999
Q ss_pred hccCCCCCeeEEEeccCCCCcccchhhhhhhccCCCcccccCCCCCCCccccceeeeehHHHHhhhHHHHHHHHHHHhcc
Q 007529 430 WDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLK 509 (600)
Q Consensus 430 w~iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnfs~p~I~~~f~~~~~yfNSGVlLiDL~kWRk~nit~k~~~~l~~~~~ 509 (600)
|++|++|+++|||+||.... ..+..+ ..+++...+|||||||||||++||+.++++++++|++++.
T Consensus 121 ~~~dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~- 186 (276)
T 3tzt_A 121 LRTDISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH- 186 (276)
T ss_dssp HTCCCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--
T ss_pred hhcCCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc-
Confidence 99999999999999997531 111111 1124444699999999999999999999999999999875
Q ss_pred CCCCCCCcCCCchhhhhcCCcEEEcCC-ccceeccCCCC--------Cccc-ccCCCCeEEEeeCCCCCCCCCCCCCCHH
Q 007529 510 SDLSLWQLGTLPPGLIAFHGHVHVIDP-FWHMLGLGYQE--------NTSF-ADAESAGVIHFNGRAKPWLDIAFPKLRP 579 (600)
Q Consensus 510 ~~~~~~DQd~LN~~ll~F~g~i~~Lp~-~WN~~glgy~~--------~~~~-e~i~~~~IIHY~G~~KPW~~~~~~~y~~ 579 (600)
..+.++|||+|| .+|.++++.||. +||+++. +.. ..+. +..++|+||||+|..|||+..+.++|++
T Consensus 187 ~~~~~~DQd~LN---~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~ 262 (276)
T 3tzt_A 187 MNLLLPDQDILN---AMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTS 262 (276)
T ss_dssp -------CHHHH---HHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHH
T ss_pred ccccCCChhHHH---HHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHH
Confidence 356789999997 889999999999 9999862 210 1111 2457899999999999999999999999
Q ss_pred HHHHHHhcchhhh
Q 007529 580 LWSKYINFSDKFI 592 (600)
Q Consensus 580 lW~kYl~~s~~fl 592 (600)
+||+|++..+++|
T Consensus 263 ~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 263 LYKHYMSLTKRYL 275 (276)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999887
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=3.9e-41 Score=348.64 Aligned_cols=251 Identities=21% Similarity=0.285 Sum_probs=186.5
Q ss_pred ceEEEecCC-c-cchhHHHHHh-hhcCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCcceeeeeecccccccccCCchhh
Q 007529 274 FHYVLASDN-V-LATSVVATSL-VKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVL 350 (600)
Q Consensus 274 iHIa~~sDn-v-La~sVvI~Si-l~Ns~~p~~i~FHIvtD~i~~~~m~~wf~ln~~~~a~vev~nie~F~~l~~~~~pvl 350 (600)
||||+++|+ + .+++|+++|+ +.|++ .+++|||++++++.+..+..-..-...+..|++..++
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~------------- 65 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN------------- 65 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-------------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcC-------------
Confidence 699999996 5 4589999999 99874 5699999999998876433211100001122211110
Q ss_pred hhhhccceeeeeecCCCcccccCCCCchhHHHHhhhccCCCCCchhhHHHhhcccccCCCCeEEEEecCeeeecCCchhh
Q 007529 351 EAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLW 430 (600)
Q Consensus 351 ~~le~~~~i~~~f~~~~~~~~~~~~~~p~~~~~~lk~~~~~y~S~~~y~Rf~LPeLLP~ldKVLYLD~DvVV~~DLseLw 430 (600)
. .. ...+. ...+++|..+|+||++|++||+++||||||+|+||++||++||
T Consensus 66 --------------~-------------~~-~~~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~ 116 (311)
T 1g9r_A 66 --------------P-------------ED-FAGFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLW 116 (311)
T ss_dssp --------------G-------------GG-GTTSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHH
T ss_pred --------------H-------------HH-HhcCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHh
Confidence 0 00 00011 0135789999999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEeccCCCCcccchhhhhhhccCCCcccccCCCCCCCccccceeeeehHHHHhhhHHHHHHHHHHHhccC
Q 007529 431 DIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKS 510 (600)
Q Consensus 431 ~iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnfs~p~I~~~f~~~~~yfNSGVlLiDL~kWRk~nit~k~~~~l~~~~~~ 510 (600)
++|++|+++|||+||.... ...+.+.++ +++..+||||||||||+++||+.++++++++|++++. .
T Consensus 117 ~~~l~~~~~aav~d~~~~~----~~~~~~~~~---------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~-~ 182 (311)
T 1g9r_A 117 DTDLGDNWLGASIDLFVER----QEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYK-D 182 (311)
T ss_dssp TCCCTTCSEEEEECHHHHT----STTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHT-T
T ss_pred ccCCCCcEEEEEeccchhh----hHHHHHhcC---------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhcc-C
Confidence 9999999999999986310 112233333 4446789999999999999999999999999999875 3
Q ss_pred CCCCCCcCCCchhhhhcCCcEEEcCCccceeccCCC------CCc-------c-cccCCCCeEEEeeCCCCCCCCCCCCC
Q 007529 511 DLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ------ENT-------S-FADAESAGVIHFNGRAKPWLDIAFPK 576 (600)
Q Consensus 511 ~~~~~DQd~LN~~ll~F~g~i~~Lp~~WN~~glgy~------~~~-------~-~e~i~~~~IIHY~G~~KPW~~~~~~~ 576 (600)
...+.|||+|| .+|.++++.||.+||++...+. ... . .+..++++||||+|+.|||...+.++
T Consensus 183 ~~~~~DQd~lN---~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~ 259 (311)
T 1g9r_A 183 VMQYQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAW 259 (311)
T ss_dssp TCSSHHHHHHH---HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCST
T ss_pred cCccCCcCHHH---HHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCc
Confidence 56789999997 7899999999999999853210 000 0 12345889999999999999988888
Q ss_pred CHHHHHHHH
Q 007529 577 LRPLWSKYI 585 (600)
Q Consensus 577 y~~lW~kYl 585 (600)
+.++|..+.
T Consensus 260 ~~~~~~~~~ 268 (311)
T 1g9r_A 260 GAERFTELA 268 (311)
T ss_dssp TTHHHHHHH
T ss_pred cHHHHHHHH
Confidence 887777665
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.93 E-value=1.3e-26 Score=243.25 Aligned_cols=225 Identities=16% Similarity=0.240 Sum_probs=151.9
Q ss_pred cceEEEecCC-cc-chhHHHHHhhhcCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCcceeeeeecccccccccCCchhh
Q 007529 273 YFHYVLASDN-VL-ATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVL 350 (600)
Q Consensus 273 ~iHIa~~sDn-vL-a~sVvI~Sil~Ns~~p~~i~FHIvtD~i~~~~m~~wf~ln~~~~a~vev~nie~F~~l~~~~~pvl 350 (600)
..+|++++|+ ++ ++.|++.|+..|+++ ..++| +++++++.+..+...... . +|..++..+ .
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~l~---~------ 66 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVDILD---S------ 66 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECCTTS---T------
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEeecC---C------
Confidence 4688888885 54 578899999999865 45666 677788776543322111 0 111111100 0
Q ss_pred hhhhccceeeeeecCCCcccccCCCCchhHHHHhhhccCCCCCchhhHHHhhcccccCCCCeEEEEecCeeeecCCchhh
Q 007529 351 EAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLW 430 (600)
Q Consensus 351 ~~le~~~~i~~~f~~~~~~~~~~~~~~p~~~~~~lk~~~~~y~S~~~y~Rf~LPeLLP~ldKVLYLD~DvVV~~DLseLw 430 (600)
..+... ..++ ++ ....+|+||++|++ ++++||||||+|+||++||++||
T Consensus 67 -------------------------~~~~~~-~~~~--~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf 115 (333)
T 1ll2_A 67 -------------------------GDSAHL-TLMK--RP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLF 115 (333)
T ss_dssp -------------------------TSTTHH-HHHH--CG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGG
T ss_pred -------------------------cchhhc-cccc--cc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHh
Confidence 000000 0011 11 24589999999996 78999999999999999999999
Q ss_pred ccCCCCCeeEEEeccCCCCcccchhhhhhhccCCCcccccCCCCCCCccccceeeeehHHHHhhhHHHHHHHHHHHhccC
Q 007529 431 DIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKS 510 (600)
Q Consensus 431 ~iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnfs~p~I~~~f~~~~~yfNSGVlLiDL~kWRk~nit~k~~~~l~~~~~~ 510 (600)
+++ .+|||+|.+ | .+||||||||||++. +..++++++++++.
T Consensus 116 ~~~----~~aAv~d~~----------------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~-- 157 (333)
T 1ll2_A 116 ERE----ELSAAPDPG----------------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG-- 157 (333)
T ss_dssp GSC----SSEEEECSS----------------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC--
T ss_pred CCC----ceeEEecCC----------------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC--
Confidence 987 588888742 1 248999999998863 34466777777642
Q ss_pred CCCCCCcCCCchhhhhcCCcE-----EEcCCccceeccC-CCCCccc-ccCCCCeEEEeeCCCCCCCCCCCC--------
Q 007529 511 DLSLWQLGTLPPGLIAFHGHV-----HVIDPFWHMLGLG-YQENTSF-ADAESAGVIHFNGRAKPWLDIAFP-------- 575 (600)
Q Consensus 511 ~~~~~DQd~LN~~ll~F~g~i-----~~Lp~~WN~~glg-y~~~~~~-e~i~~~~IIHY~G~~KPW~~~~~~-------- 575 (600)
...++|||+|| .+|.+.+ +.||.+||++... |...... ...++++||||+|..|||...+.+
T Consensus 158 ~~~~~DQ~~LN---~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~ 234 (333)
T 1ll2_A 158 SFDGGDQGLLN---TFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSE 234 (333)
T ss_dssp CTTSSHHHHHH---HHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--
T ss_pred CCCCCCHHHHH---HHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccc
Confidence 56789999997 6777643 7899999998532 3221111 234689999999999999876332
Q ss_pred ---------CCHHHHHHHHh
Q 007529 576 ---------KLRPLWSKYIN 586 (600)
Q Consensus 576 ---------~y~~lW~kYl~ 586 (600)
++.+.||++.+
T Consensus 235 ~~~~~~~~~~~~~~WW~~~~ 254 (333)
T 1ll2_A 235 GHDPTMTHPQFLNVWWDIFT 254 (333)
T ss_dssp ------CCHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHH
Confidence 34678998865
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.91 E-value=2.5e-25 Score=226.70 Aligned_cols=136 Identities=19% Similarity=0.239 Sum_probs=108.8
Q ss_pred hhhHHHhhcccccCCCCeEEEEecCeeeecCCchhhccCCCCCeeEEEeccCCCCcccchhhhhhhccCCCcccccCCCC
Q 007529 395 LMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDP 474 (600)
Q Consensus 395 ~~~y~Rf~LPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnfs~p~I~~~f~~ 474 (600)
..+|.|++++++.+ ++||||||+|++|++||++||+++ .+|||+|.+.
T Consensus 82 ~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~--------------------------- 129 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW--------------------------- 129 (263)
T ss_dssp GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS---------------------------
T ss_pred hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC---------------------------
Confidence 46899999999875 999999999999999999999987 4788887431
Q ss_pred CCCccccceeeeehHHHHhhhHHHHHHHHHHHhccCCCCCCCcCCCchhhhhcCC-----cEEEcCCccceec-cCCCCC
Q 007529 475 NECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHG-----HVHVIDPFWHMLG-LGYQEN 548 (600)
Q Consensus 475 ~~~yfNSGVlLiDL~kWRk~nit~k~~~~l~~~~~~~~~~~DQd~LN~~ll~F~g-----~i~~Lp~~WN~~g-lgy~~~ 548 (600)
..||||||||||+++ ++.+++++++++.. ...++|||+|| .+|.+ .++.||.+||++. ..|...
T Consensus 130 -~~~fNsGv~li~p~~----~~~~~l~~~~~~~~--~~~~~DQd~LN---~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~ 199 (263)
T 3u2u_A 130 -PDCFNSGVFVYQPSV----ETYNQLLHLASEQG--SFDGGDQGILN---TFFSSWATTDIRKHLPFIYNLSSISIYSYL 199 (263)
T ss_dssp -TTSEEEEEEEECCCH----HHHHHHHHHHHHHC--CTTSSHHHHHH---HHTTTTTTSCGGGBCCGGGSEEHHHHHSSH
T ss_pred -CccccCeEEEEcccH----HHHHHHHHHHHhcC--CCCcccHHHHH---HHhccccccCeeEeCCcccccccchhcccc
Confidence 148999999999864 56777888887653 56789999997 67877 7899999999984 234322
Q ss_pred ccc-ccCCCCeEEEeeCCCCCCCCC
Q 007529 549 TSF-ADAESAGVIHFNGRAKPWLDI 572 (600)
Q Consensus 549 ~~~-e~i~~~~IIHY~G~~KPW~~~ 572 (600)
... +..++++||||+|..|||+..
T Consensus 200 ~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 200 PAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp HHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred HHHHhhcCCeEEEEECCCCcCCCCC
Confidence 111 235789999999999999874
No 5
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=21.80 E-value=1.1e+02 Score=30.03 Aligned_cols=27 Identities=7% Similarity=0.256 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007529 197 DAKTFAIKLRDMVTLMEQRTRTAKIQE 223 (600)
Q Consensus 197 d~~~~~~kl~~~~~~~ee~~~~~~~~~ 223 (600)
|-++++....+++.++|+++...|+|-
T Consensus 66 dkk~m~~rFQ~~v~aLE~E~~~ErqqL 92 (219)
T 3pmr_A 66 DRQALNEHFQSILQTLEEQVSGERQRL 92 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 557889999999999999999877663
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=16.79 E-value=90 Score=21.24 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH
Q 007529 195 KSDAKTFAIKLRDMVTLMEQRTR 217 (600)
Q Consensus 195 ~~d~~~~~~kl~~~~~~~ee~~~ 217 (600)
.-..+++++||..-++.+||-++
T Consensus 8 ~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778888888888888776
No 7
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=15.61 E-value=1.1e+02 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=24.6
Q ss_pred Ccccceeeeeecccc-cchhhHHHHHHHHHHHHHHHHHHH
Q 007529 85 KGVREFIKVKVGSRR-LSYRMLFYSLLFLTFLLRFVFVLS 123 (600)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (600)
.|...-++.++..|. +. ..+++....||.+||+.++-
T Consensus 5 egp~sNLPF~~~nk~~~~--~~~~~f~g~GF~~PF~i~~~ 42 (47)
T 1v54_L 5 EGPGKNIPFSVENKWRLL--AMMTLFFGSGFAAPFFIVRH 42 (47)
T ss_dssp CSTTTSSSSCCSSHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCcCCCcccHHH--HHHHHHHHHHHHhHHHHHHH
Confidence 445555666666664 32 23667888899999997764
No 8
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=14.21 E-value=2.7e+02 Score=28.43 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=70.8
Q ss_pred ccccCCCCeEEEEecCeeeecCCchhhccCCCCCeeEEEeccCCCCcccchhhhhhhccC-CCccccc--CCCCCCCccc
Q 007529 404 PEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNF-SHPLISR--NFDPNECAWA 480 (600)
Q Consensus 404 PeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAV~D~~~~~~~~~~~~~~~ylnf-s~p~I~~--~f~~~~~yfN 480 (600)
.+++.++|=+.++|+|+++++++..= .| |..+|...--.-... +..+.+ .+|.-.. .++....|+.
T Consensus 133 ~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~-------~~~fpYERrp~S~AyIp~~eGdfYY~ 201 (289)
T 1o7q_A 133 AHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKAD-------PNDFTYERRKESAAYIPFGEGDFYYH 201 (289)
T ss_dssp HTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSC-------GGGSCCCCCTTSTTCCCTTCCSCCEE
T ss_pred HHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCC-------CCCCCCCCCcCceeeecCCCCCEEEE
Confidence 55667899999999999999988652 23 456666544321100 111111 1111010 2455778999
Q ss_pred cceeeeehHHHHhhhHHHHHHHHHHHhccCC--CCCCCcCCCchhhhhcCCcEEEcCCcccee
Q 007529 481 YGMNIFDLEAWRKTNISQTYHYWLEQNLKSD--LSLWQLGTLPPGLIAFHGHVHVIDPFWHML 541 (600)
Q Consensus 481 SGVlLiDL~kWRk~nit~k~~~~l~~~~~~~--~~~~DQd~LN~~ll~F~g~i~~Lp~~WN~~ 541 (600)
+|++==-..+-- ++++.|.+-+..-..++ -.+.|-.-||-.. ......+.|++.|...
T Consensus 202 Ga~fGGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf-~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 202 AAIFGGTPTQVL--NITQECFKGILKDKKNDIEAQWHDESHLNKYF-LLNKPTKILSPEYCWD 261 (289)
T ss_dssp EEEEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred ceeeCCcHHHHH--HHHHHHHHHHHHHHhCCeEEEecchhhhhHHH-hhcCCCEEECHHHCCC
Confidence 998844444333 35666666554322212 2455666788532 2355678899998865
No 9
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=11.74 E-value=14 Score=36.07 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=31.8
Q ss_pred chhHHHHHhhhcCCCCCcEEEEEEeC---CCCchhhhhhhh
Q 007529 285 ATSVVATSLVKNSLHPAKIVLHIITD---RKTYYPMQAWFS 322 (600)
Q Consensus 285 a~sVvI~Sil~Ns~~p~~i~FHIvtD---~i~~~~m~~wf~ 322 (600)
+++|-|+=++.|+ +|..+-||++|| ..+.+.|++||.
T Consensus 17 HLaVFL~yV~sq~-DPspLLfYL~tdlYk~~~~Ke~rk~~~ 56 (211)
T 1iap_A 17 HLMALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAFL 56 (211)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CchhhHHHHHHHHHhccChHHHHHHHH
Confidence 3799999999988 789999999997 557888999975
No 10
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=10.22 E-value=3.7e+02 Score=25.99 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=65.3
Q ss_pred HHHHhhhccCCCCcCCccccccccCCcccccCCCCCchHHHHHHHhccCccccccCCCCchhhHHHHHHHhhhccccHHH
Q 007529 121 VLSAVDTIDGESKCSTIGCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKT 200 (600)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 200 (600)
+.-||++.|.. | |+- |.+=-...+.|++..++..+...+.|-|. .|+.+.+-. ..-++
T Consensus 33 l~~A~ia~ED~-----------r----Fy~--H~GvD~~~i~RA~~~n~~~g~~~GgSTIT---QQlaKn~~l--~~~rt 90 (209)
T 3hzs_A 33 VKGAFISMQDE-----------R----FYN--HHGFDLKGTTRALFSTISDRDVQGGSTIT---QQVVKNYFY--DNDRS 90 (209)
T ss_dssp HHHHHHHHHCT-----------T----TTT--SSSSCHHHHHHHHHTCSSSTTCCCSCCHH---HHHHHHHBC--CCCCC
T ss_pred HHHHHHHHHcc-----------c----ccc--CCCcCHHHHHHHHHHHHhcCCCCCcchHH---HHHHHHHhc--cCCCC
Confidence 45788899933 3 332 32223566788888878777766667676 333333321 23457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhhhHHHHh
Q 007529 201 FAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHS 250 (600)
Q Consensus 201 ~~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~lhcL~~rlt~ey~ 250 (600)
+.+|++.++.++.-+....|.+=.-. =-.++|=+.-+....-+..++
T Consensus 91 ~~RK~~E~~lA~~lE~~~sK~eILe~---YLN~i~fG~g~yGi~aAa~~Y 137 (209)
T 3hzs_A 91 FTRKVKELFVAHRVEKQYNKNEILSF---YLNNIYFGDNQYTLEGAANHY 137 (209)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHH---HHTSSCCBTTBCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHH---HHHHhccCCCcHHHHHHHHHH
Confidence 89999999988776665545432222 124678888788887776554
Done!