BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007530
         (600 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/579 (72%), Positives = 479/579 (82%), Gaps = 9/579 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           AT +S LQ  LQS AR RA + G  CHA+II +GL  DT+TSN+L+N YSKCGL+  ARK
Sbjct: 44  ATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARK 103

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FDEMP R +VSWNT++GS+T NG  ++A+ LF+ M +EG T  SEFTVSSV+CACAAK 
Sbjct: 104 LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG-TSCSEFTVSSVVCACAAKC 162

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            VFECKQLH FALK A+D NVFVGTALLDVYAKCGL+ DA+ VFE MPER++VTWSSMVA
Sbjct: 163 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 222

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+VQNELYEEAL+LF RAQ +GLE+NQFTISS + ACA  AALI+GKQV AV CKTG GS
Sbjct: 223 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGS 282

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           N+F  SSL+DMYAKCG + +AY VFS +EEKNVVLWN ++SGFSRH RS+E MI FEKMQ
Sbjct: 283 NIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQ 342

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           Q G+ PN+ TYISVLSACSH+G+VEKG+ YFDLM++ HNV PNV HYSCM+DILGRAGL+
Sbjct: 343 QMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLL 402

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
           HEA D I  MPFDATASMWGSLLASCR YRNLELAE+AAK LF +EP NAGNH+LLSNIY
Sbjct: 403 HEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIY 462

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           AAN RWEEVARAR L+++S+ KKE+ KSW+EIK        G+RNHPRI EIY KLE LV
Sbjct: 463 AANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 522

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            EMKK+GYK +TEHDLHDVE+SRKQELL HHSEKLALTFG+M L  G PIRIMKNLRICG
Sbjct: 523 GEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICG 582

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHSFMK AS I  RE IVRD NRFHHF NG CSC +FW
Sbjct: 583 DCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/579 (72%), Positives = 479/579 (82%), Gaps = 9/579 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           AT +S LQ  LQS AR RA + G  CHA+II +GL  DT+TSN+L+N YSKCGL+  ARK
Sbjct: 17  ATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARK 76

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FDEMP R +VSWNT++GS+T NG  ++A+ LF+ M +EG T  SEFTVSSV+CACAAK 
Sbjct: 77  LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG-TSCSEFTVSSVVCACAAKC 135

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            VFECKQLH FALK A+D NVFVGTALLDVYAKCGL+ DA+ VFE MPER++VTWSSMVA
Sbjct: 136 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 195

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+VQNELYEEAL+LF RAQ +GLE+NQFTISS + ACA  AALI+GKQV AV CKTG GS
Sbjct: 196 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGS 255

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           N+F  SSL+DMYAKCG + +AY VFS +EEKNVVLWN ++SGFSRH RS+E MI FEKMQ
Sbjct: 256 NIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQ 315

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           Q G+ PN+ TYISVLSACSH+G+VEKG+ YFDLM++ HNV PNV HYSCM+DILGRAGL+
Sbjct: 316 QMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLL 375

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
           HEA D I  MPFDATASMWGSLLASCR YRNLELAE+AAK LF +EP NAGNH+LLSNIY
Sbjct: 376 HEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIY 435

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           AAN RWEEVARAR L+++S+ KKE+ KSW+EIK        G+RNHPRI EIY KLE LV
Sbjct: 436 AANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 495

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            EMKK+GYK +TEHDLHDVE+SRKQELL HHSEKLALTFG+M L  G PIRIMKNLRICG
Sbjct: 496 GEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICG 555

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHSFMK AS I  RE IVRD NRFHHF NG CSC +FW
Sbjct: 556 DCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/602 (64%), Positives = 483/602 (80%), Gaps = 14/602 (2%)

Query: 12  YYKSFSSSAI-----ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN 66
           ++ S SSS+         + + NAT +S +   L+ CA+ +  ++GK CHA+I+ MGL  
Sbjct: 38  FFASLSSSSCIVECEKPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKT 97

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D LTSNILIN YSKCG +  AR+VFDEMP R +VSWNT+IGS T NG E EA+ L + M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG TP+SEFT+SSVLCACAAK  + EC+ LH FA+KAAMD NVFV TALLDVYAKCGL+
Sbjct: 158 REG-TPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLM 216

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            DA  VFESMP+R+ VTWSSM AG+VQNE+YE+AL LFR+A   GL+++QF +SSVICAC
Sbjct: 217 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICAC 276

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           AGLAA+I+GKQV+A+L K+GF SN+F ASSL+DMYAKCG + ++Y VF  +E++NVVLWN
Sbjct: 277 AGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWN 336

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MISG SRHARS+EVMILFEKMQQ GL PN+ T++SVLSAC H+G+V+KG+ YFDLM K+
Sbjct: 337 AMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKE 396

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           H++ PNVFHYSCM+D L RAG I EAYDLI  +PF+A+ASMWGSLLASCR + NLELAE+
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEV 456

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AAK+LF +EP N+GN+LLLSN+YAAN +W+EVA+ RKL+++S+VKKE+ KSW+EIK    
Sbjct: 457 AAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G+RNHP+I EIYSKL ++++E++KLGYK ET+HDLH V +S KQELL HHSEKLA 
Sbjct: 517 LFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAF 576

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
           T GL+ L P  PIRIMKNLRICGDCHSFMK AS+   R+ IVRD NRFHHF NG CSC D
Sbjct: 577 TMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGD 636

Query: 599 FW 600
           FW
Sbjct: 637 FW 638


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/551 (72%), Positives = 459/551 (83%), Gaps = 9/551 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           AT +S LQ  LQS AR RA + G  CHA+II +GL  DT+TSN+L+N YSKCGL+  ARK
Sbjct: 44  ATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARK 103

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FDEMP R +VSWNT++GS+T NG  ++A+ LF+ M +EG    SEFTVSSV+CACAAK 
Sbjct: 104 LFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEG-ISCSEFTVSSVVCACAAKC 162

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            VFECKQLH FALK A+D NVFVGTALLDVYAKCGL+ DAS VFE MPER++VTWSSMVA
Sbjct: 163 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVA 222

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+VQNELYEEAL+LF RAQ +GLE+NQFTISS + ACA  AALI+GKQV AVLCKTG GS
Sbjct: 223 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGS 282

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           N+F  SSL+DMYAKCG + +AY VFS +EEKNVVLWN M+SGFSRH RS+E MI FEKMQ
Sbjct: 283 NIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQ 342

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           Q G+ PNE TYISVL+ACSH+G+VEKG+ YFDLM++ HNV PNV HYSCM+DILGRAGL+
Sbjct: 343 QMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLL 402

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
           HEA DLI  MPFDATASMWGSLLASCR YRNLE AE+AAK LF +EP NAGNH+LLSNIY
Sbjct: 403 HEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIY 462

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           AAN RWEEVARAR L+++S+ KKE+ KSW+EIK        G+RNHPRI EIY KLE LV
Sbjct: 463 AANNRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 522

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            EMKK+GYK +TEHDLHDVE+SRKQELL HHSEKLALTFG+M L  G PIRIMKNLRICG
Sbjct: 523 GEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICG 582

Query: 562 DCHSFMKFASR 572
           DCHSFMK ASR
Sbjct: 583 DCHSFMKLASR 593


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/602 (64%), Positives = 482/602 (80%), Gaps = 14/602 (2%)

Query: 12  YYKSFSSSAI-----ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN 66
           ++ S SSS+         + + NAT +S +   L+ CA+ +  ++GK CHA+I+ MGL  
Sbjct: 38  FFASLSSSSCIVECEKPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKT 97

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D LTSNILIN YSKCG +  AR+VFDEMP R +VSWNT+IGS T NG E EA+ L + M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG TP+SEFT+SSVLCACAAK  + EC+ LH FA+KAAMD NVFV TALLDVYAKCGL+
Sbjct: 158 REG-TPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLM 216

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            DA  VFESMP+R+ VTWSSM AG+VQNE+YE+AL LFR+A   GL+++QF +SSVICAC
Sbjct: 217 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICAC 276

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           AGLAA+I+GKQ++A+L K+GF SN+F ASSL+DMYAKCG + ++Y VF  +E++NVVLWN
Sbjct: 277 AGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWN 336

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MISG SRHARS+EVMILFEKMQQ GL PN+ T++SVLSAC H+G+V KG+ YFDLM K+
Sbjct: 337 AMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKE 396

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           H++ PNVFHYSCM+D L RAG I EAYDLI  +PF+A+ASMWGSLLASCR + NLELAE+
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEV 456

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AAK+LF +EP N+GN+LLLSN+YAAN +W+EVA+ RKL+++S+VKKE+ KSW+EIK    
Sbjct: 457 AAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G+RNHP+I EIYSKL ++++E++KLGYK ET+HDLH V +S KQELL HHSEKLA 
Sbjct: 517 LFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAF 576

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
           T GL+ L P  PIRIMKNLRICGDCHSFMK AS+   R+ IVRD NRFHHF NG CSC D
Sbjct: 577 TMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGD 636

Query: 599 FW 600
           FW
Sbjct: 637 FW 638


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/577 (63%), Positives = 466/577 (80%), Gaps = 10/577 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           +S L   LQ CA+ R+ + G+ CHA+II +GL  D LTSN+LIN YSKC L+  ARK F+
Sbjct: 43  VSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFN 102

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EMP + +VSWNT+IG+ T N  ++EA+ L I M REG TP++EFT+SSVLC CA K  + 
Sbjct: 103 EMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREG-TPFNEFTISSVLCNCAFKCAIL 161

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           EC QLH F++KAA+D N FVGTALL VYAKC  I DAS++FESMPE+N VTWSSM+AG+V
Sbjct: 162 ECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYV 221

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN  +EEAL++FR AQ++G + + F ISS + ACAGLA LI+GKQVHA+  K+GFGSN++
Sbjct: 222 QNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIY 281

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            +SSL+DMYAKCGC+ +AY VF G+ E +++VLWN MISGF+RHAR+ E MILFEKMQQ 
Sbjct: 282 VSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQR 341

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G  P++ TY+ VL+ACSH+G+ E+G+ YFDLMV+QHN+ P+V HYSCMIDILGRAGL+H+
Sbjct: 342 GFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHK 401

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AYDLI  MPF+AT+SMWGSLLASC+ Y N+E AEIAAK LF MEP+NAGNH+LL+NIYAA
Sbjct: 402 AYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAA 461

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
           N++W+EVARARKL+R+++V+KE+  SW+EIK        G+RNHP+I +IY+KL+ LV E
Sbjct: 462 NKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVE 521

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +KKL YK +T +DLHDVE++RKQ LL HHSEKLA+TFGLMCL   +PIRI+KNLRICGDC
Sbjct: 522 LKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDC 581

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+FMK  S+   RE IVRD NRFHHF +G CSC +FW
Sbjct: 582 HTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/594 (59%), Positives = 452/594 (76%), Gaps = 9/594 (1%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
           S+    ++    +   +  + +   LQ CAR  A +  K CH KII + L  D    N+L
Sbjct: 43  SYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVL 102

Query: 75  INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
           IN YSKCG +  AR+VFD M +R +VSWNT+IG YT N  E EA+ +F+ M  EG   +S
Sbjct: 103 INAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFS 161

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
           EFT+SSVL AC    D  ECK+LH  ++K  +D N++VGTALLD+YAKCG+I DA +VFE
Sbjct: 162 EFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFE 221

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
           SM +++ VTWSSMVAG+VQN+ YEEAL+L+RRAQ + LE NQFT+SSVICAC+ LAALI+
Sbjct: 222 SMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 281

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           GKQ+HAV+CK+GFGSN+F ASS VDMYAKCG + ++Y +FS ++EKN+ LWNT+ISGF++
Sbjct: 282 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAK 341

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           HAR  EVMILFEKMQQ G+HPNE T+ S+LS C H G+VE+G+ +F LM   + + PNV 
Sbjct: 342 HARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVV 401

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           HYSCM+DILGRAGL+ EAY+LI ++PFD TAS+WGSLLASCR Y+NLELAE+AA++LF +
Sbjct: 402 HYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFEL 461

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRN 486
           EP+NAGNH+LLSNIYAAN++WEE+A++RKL+RD +VKK + KSW++IK        G+  
Sbjct: 462 EPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESG 521

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           HPRI EI S L+ LV + +K GYKP  EH+LHDVE  +K+ELL+ HSEKLAL FGLMCL 
Sbjct: 522 HPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLP 581

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              P+RIMKNLRIC DCH FMK AS    R  IVRD+NRFHHF++G CSC DFW
Sbjct: 582 ESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/580 (60%), Positives = 448/580 (77%), Gaps = 9/580 (1%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           N  + S     LQ CAR  A +  K CH K + M L  D   SN+LIN YSKCG +  AR
Sbjct: 59  NVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELAR 118

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           +VFD M +R +VSWNT+IG YT N  E EA+ +F  M  EG   +SEFT+SSVL AC A 
Sbjct: 119 QVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEG-FKFSEFTISSVLSACGAN 177

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
            D  ECK+LH  ++K ++D N++VGTALLD+YAKCG+I+DA +VFESM +++ VTWSSMV
Sbjct: 178 CDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMV 237

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           AG+VQ++ YEEAL+L+RRAQ + LE NQFT+SSVICAC+ LAALI+GKQ+HAV+ K+GFG
Sbjct: 238 AGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFG 297

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           SN+F ASS VDMYAKCG + ++Y +FS ++EKN+ LWNT+ISGF++HAR  EVMILFEKM
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKM 357

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           QQ G+HPNE T+ S+LS C H G+VE+G+ +F LM   + + PNV HYSCM+DILGRAGL
Sbjct: 358 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 417

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EAY+LI ++PF+ TAS+WGSLLASCR  +NLELAE+AAK+LF +EP+NAGNH+LLSNI
Sbjct: 418 LSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNI 477

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKL 500
           YAAN++WEE+A++RKL+RD +VKK + +SW++IK        G+ +HPRI EI + L+ L
Sbjct: 478 YAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNL 537

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
           V E++K GYKP  EH+LHDVE  +K+ELL+ HSEKLAL FGLMCL  G  +RIMKNLRIC
Sbjct: 538 VIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRIC 597

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH FMK AS    R  IVRD NRFHHF++G CSC +FW
Sbjct: 598 VDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/583 (60%), Positives = 449/583 (77%), Gaps = 17/583 (2%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           +S L   LQ CA+  + + G+ CHA+II +GL  D LTS +LIN YSKC L+   RK  D
Sbjct: 50  VSNLHYLLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXD 109

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EM  + ++  NT IG+ T N  +++A+ L I M RE  TP++EFT+SSVLC CA K  + 
Sbjct: 110 EMLVKSLILXNTRIGALTQNAEDRKALKLLIRMQRE-VTPFNEFTISSVLCNCAFKCAIL 168

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           EC QLH F++KAA+D N FV TALL VYAKC  I DAS++FESMPE+N VTWSSM+AG+V
Sbjct: 169 ECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYV 228

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN  ++EAL+LF  AQ++G + + F ISS + ACAGLA L++GKQVHA+  K+GFGSN++
Sbjct: 229 QNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIY 288

Query: 273 AASSLVDMYAKCGCVVDAYFVFSG-IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            ASSL+DMYAKCGC+ +AY VF G +E +++VLWN MISGF+RHA + E MILFEKMQQ 
Sbjct: 289 VASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQR 348

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G  P++ TY+SVL+ACSH+G+ E+G+ YFDLMV+QHN+ P+V HYSCMIDILGRAGL+ +
Sbjct: 349 GFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQK 408

Query: 392 AYDLILNMPFDATASMWGS-------LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           AYDLI  M F+AT+SMWGS       + ASCR Y N+E AEIAAK LF MEP+NAGNH+L
Sbjct: 409 AYDLIGRMSFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNHIL 468

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
           L+NIYAAN++ +EVARARKL+R+++V+KE+  SW+EIK        G+RNHP+I + Y+K
Sbjct: 469 LANIYAANKKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYAK 528

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L+ LV E+KKL YK +T +DLHDVE+SRK  LL HHSEKLA+TFGL+CL   +PIRI+KN
Sbjct: 529 LDNLVVELKKLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKN 588

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           LRICGDCH+FMK  S+ A RE IVRD NRFHHF +G CSC +F
Sbjct: 589 LRICGDCHTFMKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/554 (61%), Positives = 431/554 (77%), Gaps = 9/554 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ CAR  A +  K CH KII + L  D    N+LIN YSKCG +  AR+VFD M +R +
Sbjct: 60  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 119

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWNT+IG YT N  E EA+ +F+ M  EG   +SEFT+SSVL AC    D  ECK+LH 
Sbjct: 120 VSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFSEFTISSVLSACGVNCDALECKKLHC 178

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            ++K  +D N++VGTALLD+YAKCG+I DA +VFESM +++ VTWSSMVAG+VQN+ YEE
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL+L+RRAQ + LE NQFT+SSVICAC+ LAALI+GKQ+HAV+CK+GFGSN+F ASS VD
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 298

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAKCG + ++Y +FS ++EKN+ LWNT+ISGF++HAR  EVMILFEKMQQ G+HPNE T
Sbjct: 299 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 358

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           + S+LS C H G+VE+G+ +F LM   + + PNV HYSCM+DILGRAGL+ EAY+LI ++
Sbjct: 359 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 418

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           PFD TAS+WGSLLASCR Y+NLELAE+AA++LF +EP+NAGNH+LLSNIYAAN++WEE+A
Sbjct: 419 PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIA 478

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           ++RKL+RD +VKK + KSW++IK        G+  HPRI EI S L+ LV + +K GYKP
Sbjct: 479 KSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKP 538

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
             EH+LHDVE  +K+ELL+ HSEKLAL FGLMCL    P+RIMKNLRIC DCH FMK AS
Sbjct: 539 SVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAAS 598

Query: 572 RIAGRETIVRDLNR 585
               R  IVRD+NR
Sbjct: 599 MATRRFIIVRDVNR 612


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/585 (58%), Positives = 421/585 (71%), Gaps = 9/585 (1%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           A  + N  ++S +   LQ CA+ ++ + GK CH   I  GL  DTLT NILIN Y+KCG 
Sbjct: 48  ARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGR 107

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
              AR VFD M  R IVSWNT+I  YT +G + +A+ LF  M REG T  SEFT+SS +C
Sbjct: 108 NDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREG-THMSEFTLSSTIC 166

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           ACAAK  + ECKQLH  ALK A+D N FVGTA+LDVYAKC +I DA  VFE MPER  VT
Sbjct: 167 ACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVT 226

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           WSS+ AG+VQN L+EEAL LFR AQ  G+E  +FT+S+++ ACA LA  I+G Q+HAV+ 
Sbjct: 227 WSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVIL 286

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           K GF  N F A+SLVD+YA+CG +  AY +F+ +E KNVV+WN MI+ FSRHA S E MI
Sbjct: 287 KCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMI 346

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LFEKMQQ G+ PNE TY+SVLS CSH G+VEKG+ YF L++    V PNV HYSCM+D+L
Sbjct: 347 LFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVL 406

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
           GR+G   EA++L+  MPF+ TASMWGSLL SCRNY N+ LA IAA+QLF +EPDN GNH+
Sbjct: 407 GRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHV 466

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLSN+YAA+  WE V  ARK ++DS  KKE  +SW+E KGK        R HPRI +IY+
Sbjct: 467 LLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYN 526

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           KLE++  EM+K   +   E DLHDV   +K+ELL HHSEKLAL+FGL+ L   +PI I K
Sbjct: 527 KLEEIYHEMRKFARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHK 586

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLRICGDCHSFMK A+ I  R  IVRD NRFHHF +GSCSC DFW
Sbjct: 587 NLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/577 (57%), Positives = 419/577 (72%), Gaps = 9/577 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ TL   LQ CA+ R+ + GK CH   I  GL  DT+T NILIN Y+KCG    AR+VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D M  R I+SWNT+I  YT N  + EA+ LF  M REG T  +EFT+SS LCACAAK  +
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREG-TQMTEFTLSSTLCACAAKYAI 173

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            ECKQLH  A+K A+D + FVGTA LDVYAKC +I DA  VFE+MPE+  VTWSS+ AGF
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGF 233

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           VQN L+EE L LF+  Q  G++  +FT+SS++  CA LA +I+G QVHAV+ K GF  N+
Sbjct: 234 VQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNL 293

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F A+SLVD+YAKCG +  +Y VF+ +EEKNVVLWN MI+ FSRHA S E MILFEKMQQ 
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ PNE TY+S+LSACSH G+VE+G+ YF+L++      PNV HYSCM+D+LGR+G   E
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDE 413

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A+ L+  MPF+ TASMWGSLL S R ++N+ LA IAA+QLF +EP+N GNH+LLSN+YAA
Sbjct: 414 AWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAA 473

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
           +  WE V  ARK +RDS  KKE  +SW+E KGK        R HP I ++Y+KLE++  E
Sbjct: 474 SGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHE 533

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M+K+ ++  T+ DLHDV   +K+ELL HHSEKLA  FGL+ L P +PI I KNLRICGDC
Sbjct: 534 MRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDC 593

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HSFMK  S I  R+ IVRD+NRFHHF +GSCSC DFW
Sbjct: 594 HSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 163/291 (56%), Gaps = 2/291 (0%)

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           N++R  +     FT+  +L  CA +R +   K  H  A+   +  +      L+++Y KC
Sbjct: 45  NLVRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKC 104

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G    A RVF++M  R+ ++W++M+AG+  N    EAL LF R    G +  +FT+SS +
Sbjct: 105 GQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTL 164

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
           CACA   A+I+ KQ+H +  K    S+ F  ++ +D+YAKC  + DA +VF  + EK  V
Sbjct: 165 CACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSV 224

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W+++ +GF ++    EV+ LF+  Q+ G+   E T  S+LS C+ + ++ +G     ++
Sbjct: 225 TWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVI 284

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           VK H    N+F  + ++D+  + G I ++Y++  +M  +    +W +++AS
Sbjct: 285 VK-HGFHRNLFVATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIAS 333


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/493 (64%), Positives = 398/493 (80%), Gaps = 9/493 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + LQ CA+ R P+ GK CH ++I +GL  DTLTSN+L+N YSKCGLI  A KVFDE+P
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIP 60

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R +VSWN +IG+   NG E++A+ +F+ M REG +P SEFTVSSV+CACAAK DVF C+
Sbjct: 61  ERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREG-SPCSEFTVSSVVCACAAKGDVFFCR 119

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           QLH FA+KA +D +VFVGTAL+DVYAKCG I DAS VFE MPERN+VTWSS+VAGFVQNE
Sbjct: 120 QLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNE 179

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           LYEE L+LF R + +GLE NQF ISSVI ACAGLAALI+G+QVHA++C+TGFG N F AS
Sbjct: 180 LYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVAS 239

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LVDMYAKCG + +AY +F  IE+KNVVLWN +ISGF++HA S EVM LFE+MQQ G+ P
Sbjct: 240 ALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQP 299

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           +E TY++VLSAC H+G+V+KG+SYFDLM ++HNV PNV HYSCM+DILGR GL+HEA++L
Sbjct: 300 DEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHEL 359

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           +  MPF ATASMWGSLLASCR + NLELAEIAAK LF MEPD  GN++LL+N YAA+++W
Sbjct: 360 MTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKW 419

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKL 507
           EE A+ARK ++ SE+ KE+ KSW+EIK        G+R HPRI +IY +L  L+EEM KL
Sbjct: 420 EEAAKARKSLKGSEILKERGKSWIEIKDKVHTFMAGERTHPRITDIYLELNNLLEEMTKL 479

Query: 508 GYKPETEHDLHDV 520
             K ET+ DLHD+
Sbjct: 480 VNKAETDFDLHDL 492



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 148/284 (52%), Gaps = 3/284 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + + +CA +      +  HA  I   ++ D      LI+ Y+KCG I  A  VF+ M
Sbjct: 101 TVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGM 160

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R  V+W++I+  +  N   +E + LF    +E     ++F +SSV+ ACA    + E 
Sbjct: 161 PERNDVTWSSIVAGFVQNELYEEGLVLFARG-KEMGLENNQFMISSVIRACAGLAALIEG 219

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H    +     N FV +AL+D+YAKCG I +A  +F ++ ++N V W+++++GF ++
Sbjct: 220 RQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKH 279

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
               E + LF   Q  G++ ++ T  +V+ AC  +  + +G+    ++ +      N+  
Sbjct: 280 ACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLH 339

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHA 316
            S +VD+  + G V +A+ + + +       +W ++++    H 
Sbjct: 340 YSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHG 383


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/579 (43%), Positives = 373/579 (64%), Gaps = 9/579 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A  + TL + L++CA       G+  H+ ++ M +  D+     LI+ YSKCGL+  AR 
Sbjct: 286 APSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARM 345

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD MP + ++ WN+II  Y+  G + EA++LF NM +EG   +++ T+S++L + A  +
Sbjct: 346 VFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEG-LEFNQTTLSTILKSTAGSQ 404

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
               C+Q+H  ++K+    + +V  +LLD Y KC L+ DA++VFE  P  + V ++SM+ 
Sbjct: 405 ANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMIT 464

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            + Q  L EEAL ++ R Q   ++ + F  SS+  ACA L+A  QGKQ+H  + K G  S
Sbjct: 465 AYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLS 524

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++FA +SLV+MYAKCG + DA  +F+ I  + +V W+ MI G ++H    + + LF +M 
Sbjct: 525 DVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQML 584

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           + G+ PN  T +SVLSAC+H G+V + + +F LM K   + P   HY+CM+DILGR G +
Sbjct: 585 KNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRL 644

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA  L+  MPF A+A++WG+LL + R ++N+EL   AA+ L  +EP+ +G H+LL+NIY
Sbjct: 645 DEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIY 704

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           A+   W+ VA+ R+ +++S VKKE   SW+E+K        G R+HPR  EIY KL+ L 
Sbjct: 705 ASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLR 764

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           E +   GY P  E DLHDVE   K++LL HHSEKLA+ FGL+   PG PIR+ KNLR+C 
Sbjct: 765 ERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCI 824

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+  KF S++A RE IVRD+NRFHHF +GSCSC D+W
Sbjct: 825 DCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 226/432 (52%), Gaps = 9/432 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L   L +CA       G   H  +I +G ++D  ++N L++ Y+K G    A  VF E+
Sbjct: 190 SLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEI 249

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  IVSWN +I     + +   A+ L   M      P S FT+SS L ACAA   V   
Sbjct: 250 PKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAP-SMFTLSSALKACAAIGLVKLG 308

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH   +K  M+ + FVG  L+D+Y+KCGL+ DA  VF+ MP ++ + W+S+++G+   
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNC 368

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA+ LF      GLE+NQ T+S+++ + AG  A    +QVH +  K+G+  + + A
Sbjct: 369 GYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVA 428

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+D Y KC  + DA  VF     +++V + +MI+ +S++    E + ++ +MQ   + 
Sbjct: 429 NSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIK 488

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+   + S+ +AC+++   E+GK    + V +  +L +VF  + ++++  + G I +A  
Sbjct: 489 PDAFIFSSLFNACANLSAYEQGKQ-IHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASC 547

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA--GNHLLLSNIYAAN 452
           +   + +    S W +++     + +       A QLF     N    NH+ L ++ +A 
Sbjct: 548 IFNEISWRGIVS-WSAMIGGLAQHGHGR----KALQLFYQMLKNGILPNHITLVSVLSAC 602

Query: 453 RRWEEVARARKL 464
                V  AR+ 
Sbjct: 603 NHAGLVTEARRF 614



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 212/475 (44%), Gaps = 82/475 (17%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA+II           N L+N YSKC     ARK+  +  +  +VSW+ +I  Y  
Sbjct: 69  GMAIHARII---RLGLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQ 125

Query: 112 NGREQEA----------------------------------------VALFINMLREGKT 131
           NGR +EA                                        VAL   M+  G +
Sbjct: 126 NGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGIS 185

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P +EF++S+VL ACA   D     ++H + +K   D + F   ALLD+YAK G    A  
Sbjct: 186 P-NEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIA 244

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF  +P+ + V+W++++AG V +E  + AL L  +     +  + FT+SS + ACA +  
Sbjct: 245 VFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGL 304

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           +  G+Q+H+ L K     + F    L+DMY+KCG + DA  VF  +  K+V++WN++ISG
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISG 364

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS-----------HIGMVEKGKSY- 359
           +S     +E M LF  M + GL  N+ T  ++L + +           H   ++ G  Y 
Sbjct: 365 YSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYD 424

Query: 360 ----------------FDLMVKQHNVLP--NVFHYSCMIDILGRAGLIHEAYDLILNM-- 399
                            +   K   V P  ++  Y+ MI    + GL  EA  + L M  
Sbjct: 425 GYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQD 484

Query: 400 -PFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDN-AGNHLLLSNIYA 450
                 A ++ SL  +C N    E  +     +   G+  D  AGN L+  N+YA
Sbjct: 485 RDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLV--NMYA 537


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/575 (44%), Positives = 369/575 (64%), Gaps = 9/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL + +  CA   A  +GK  H   I  G+ +D L  N L+N Y+KCG ++ A K+F+ 
Sbjct: 222 STLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFER 281

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R + SWN IIG Y+ N +  EA+A F  M   G  P S  T+ SVL ACA    + +
Sbjct: 282 MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS-ITMVSVLPACAHLFALEQ 340

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+H +A+++  + N  VG AL+++YAKCG ++ A ++FE MP++N V W+++++G+ Q
Sbjct: 341 GQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQ 400

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    EAL LF   Q  G++ + F I SV+ ACA   AL QGKQ+H    ++GF SN+  
Sbjct: 401 HGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVV 460

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + LVD+YAKCG V  A  +F  + E++VV W TMI  +  H    + + LF KMQ+ G 
Sbjct: 461 GTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGT 520

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             +   + ++L+ACSH G+V++G  YF  M   + + P + HY+C++D+LGRAG + EA 
Sbjct: 521 KLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEAN 580

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            +I NM  +  A++WG+LL +CR + N+EL E AAK LF ++PDNAG ++LLSNIYA  +
Sbjct: 581 GIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQ 640

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RWE+VA+ RK++++  VKK+   S V +         G R HP+  +IY+ LE L E+M+
Sbjct: 641 RWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMR 700

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K GY P T   L DVE+  K+ +L  HSEKLA++FG++   PG+PIRIMKNLR+C DCH+
Sbjct: 701 KAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHN 760

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S+I GRE IVRD NRFHH  NG CSC D+W
Sbjct: 761 ATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 220/375 (58%), Gaps = 3/375 (0%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + +++C  +     G+  H  II  G  +D +    L + Y+KCG +  AR+VFD MP+R
Sbjct: 125 SVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKR 184

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSWN II  Y+ NG+  EA+ALF  M   G  P S  T+ SV+  CA    + + KQ+
Sbjct: 185 DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSS-TLVSVMPVCAHLLALEQGKQI 243

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H +A+++ ++ +V V   L+++YAKCG ++ A ++FE MP R+  +W++++ G+  N  +
Sbjct: 244 HCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQH 303

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EAL  F R QV G++ N  T+ SV+ ACA L AL QG+Q+H    ++GF SN    ++L
Sbjct: 304 HEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNAL 363

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           V+MYAKCG V  AY +F  + +KNVV WN +ISG+S+H    E + LF +MQ  G+ P+ 
Sbjct: 364 VNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDS 423

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
              +SVL AC+H   +E+GK      ++      NV   + ++DI  + G ++ A  L  
Sbjct: 424 FAIVSVLPACAHFLALEQGKQIHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTAQKLFE 482

Query: 398 NMPFDATASMWGSLL 412
            MP     S W +++
Sbjct: 483 RMPEQDVVS-WTTMI 496



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 192/345 (55%), Gaps = 13/345 (3%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V W   I  Y  NG   +A+ L+  M R G  P  +    SV+ AC ++ D+   +++H 
Sbjct: 86  VVWKETIIGYVKNGFWNKALRLYYQMQRTGINP-DKLVFLSVIKACGSQSDLQAGRKVHE 144

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +    + +V VGTAL  +Y KCG + +A +VF+ MP+R+ V+W++++AG+ QN    E
Sbjct: 145 DIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYE 204

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF   QV G++ N  T+ SV+  CA L AL QGKQ+H    ++G  S++   + LV+
Sbjct: 205 ALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVN 264

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAKCG V  A+ +F  +  ++V  WN +I G+S +++  E +  F +MQ  G+ PN  T
Sbjct: 265 MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVK----QHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            +SVL AC+H+  +E+G+      ++     ++V+ N      ++++  + G ++ AY L
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN-----ALVNMYAKCGNVNSAYKL 379

Query: 396 ILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDN 438
              MP     + W ++++  S   + +  LA     Q  G++PD+
Sbjct: 380 FERMPKKNVVA-WNAIISGYSQHGHPHEALALFIEMQAQGIKPDS 423



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 132/241 (54%), Gaps = 4/241 (1%)

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N V W   + G+V+N  + +AL L+ + Q  G+  ++    SVI AC   + L  G++VH
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             +   GF S++   ++L  MY KCG + +A  VF  + +++VV WN +I+G+S++ +  
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LF +MQ  G+ PN  T +SV+  C+H+  +E+GK      ++   +  +V   + +
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS-GIESDVLVVNGL 262

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPD 437
           +++  + G ++ A+ L   MP    AS W +++   S  +  +  LA     Q+ G++P+
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVAS-WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321

Query: 438 N 438
           +
Sbjct: 322 S 322


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/574 (44%), Positives = 375/574 (65%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++CA       G+  H+ +I M + +D+     LI+ YSKC  +  AR VF  M
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +++WN +I  ++ N  ++EA +LF  M  EG   +++ T+S+VL + AA +  + C
Sbjct: 274 PERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEG-IGFNQTTLSTVLKSIAALQANYMC 332

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  +LK+  + + +V  +L+D Y KCG + DA+RVFE  P  + V ++S+V  + Q+
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQD 392

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEAL L+   Q  G++ + F  SS++ ACA L+A  QGKQVH  + K GF S++FA 
Sbjct: 393 GQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAG 452

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SLV+MYAKCG + DA   FS I  + +V W+ MI G ++H    E + LF++M + G+ 
Sbjct: 453 NSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVP 512

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T +SVL AC+H G+V + K YF+ M     + P   HY+CMID+LGRAG +  A +
Sbjct: 513 PNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAME 572

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+  MPF A A +WG+LL + R ++N++L E AA+ L  +EP+ +G H+LL+NIYA+   
Sbjct: 573 LVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGM 632

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++VAR R+L++D +VKKE   SW+E+K        G R+H R  EIY+KL++L + +KK
Sbjct: 633 WDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKK 692

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P  E DLHDVE S K++LL HHSEKLA+ FGL+   PG PIR+ KNLRIC DCH+ 
Sbjct: 693 AGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTV 752

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KF S+I  RE IVRD NRFHHF  GSCSC ++W
Sbjct: 753 LKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 199/364 (54%), Gaps = 2/364 (0%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L++C   +  V GK  H  ++  G ++D   +N L+  Y+KCG    AR +FD +P R
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSWN +   Y  +    EAV+LF +M+  G  P +EF++SS++  C    D  + +++
Sbjct: 75  SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRP-NEFSLSSMINVCTGLEDSVQGRKI 133

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H + +K   D + F   AL+D+YAK G++ DAS VF+ + + + V+W++++AG V +E +
Sbjct: 134 HGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYH 193

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
             AL L R     G+  N FT+SS + ACAG+A    G+Q+H+ L K   GS+ F    L
Sbjct: 194 HRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGL 253

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +DMY+KC  + DA  VF  + E++++ WN +ISG S++    E   LF  M   G+  N+
Sbjct: 254 IDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQ 313

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T  +VL + + +      +    L +K      N +  + +ID  G+ G + +A  +  
Sbjct: 314 TTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDN-YVVNSLIDTYGKCGHVEDATRVFE 372

Query: 398 NMPF 401
             P 
Sbjct: 373 ESPI 376



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 249/484 (51%), Gaps = 24/484 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L + +  C      V+G+  H  +I +G ++D  ++N L++ Y+K G++  A  VFDE+
Sbjct: 113 SLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEI 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  IVSWN II     +     A+ L   M + G  P + FT+SS L ACA        
Sbjct: 173 AKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCP-NMFTLSSALKACAGMALRELG 231

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH   +K  M  + F+G  L+D+Y+KC  + DA  VF+ MPER+ + W+++++G  QN
Sbjct: 232 RQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQN 291

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  EEA  LF      G+ +NQ T+S+V+ + A L A    +Q+HA+  K+GF  + +  
Sbjct: 292 EEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVV 351

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+D Y KCG V DA  VF      ++VL+ ++++ +++  +  E + L+ +MQ  G+ 
Sbjct: 352 NSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIK 411

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+     S+L+AC+ +   E+GK    + + +   + ++F  + ++++  + G I +A  
Sbjct: 412 PDSFVCSSLLNACASLSAYEQGKQ-VHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASC 470

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAAN 452
               +P     S W +++     +   + A    KQ+   G+ P    NH+ L ++  A 
Sbjct: 471 AFSRIPVRGIVS-WSAMIGGLAQHGYGKEALQLFKQMLKVGVPP----NHITLVSVLCAC 525

Query: 453 RRWEEVARAR------KLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKK 506
                VA A+      K++   E  +E     +++ G+           KLE  +E + K
Sbjct: 526 NHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAG---------KLEAAMELVNK 576

Query: 507 LGYK 510
           + ++
Sbjct: 577 MPFQ 580



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 155/267 (58%), Gaps = 1/267 (0%)

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           +EF   SVL AC   +D+   KQ+H   +    D + FV  +L+ +YAKCG   DA  +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           +++P+R+ V+W+++ + +V ++++ EA+ LF    + G+  N+F++SS+I  C GL   +
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           QG+++H  L K G+ S+ F+A++LVDMYAK G + DA  VF  I + ++V WN +I+G  
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H      + L  +M ++G+ PN  T  S L AC+ + + E G+     ++K  ++  + 
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM-DMGSDS 247

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMP 400
           F    +ID+  +   + +A  +   MP
Sbjct: 248 FLGVGLIDMYSKCNSMDDARLVFKLMP 274



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 16/218 (7%)

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
            +LG++ N+F   SV+ AC     L+ GKQVH ++  TGF S+ F A+SLV +YAKCG  
Sbjct: 2   HLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGF 61

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            DA  +F  I +++VV WN + S +       E + LF  M  +G+ PNE +  S+++ C
Sbjct: 62  GDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVC 121

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS- 406
           + +    +G+     ++K      + F  + ++D+  + G++ +A  +     FD  A  
Sbjct: 122 TGLEDSVQGRKIHGYLIKL-GYDSDAFSANALVDMYAKVGILEDASSV-----FDEIAKP 175

Query: 407 ---MWGSLLASC----RNYRNLELAEIAAKQLFGMEPD 437
               W +++A C     ++R LEL     K   GM P+
Sbjct: 176 DIVSWNAIIAGCVLHEYHHRALELLREMNKS--GMCPN 211


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/574 (43%), Positives = 374/574 (65%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++CA       G+  H+ ++ M + +D   S  L++ YSKC L+  AR  F+ +
Sbjct: 361 TLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 420

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ +++WN II  Y+    + EA++LF+ M +EG   +++ T+S++L + A  + V  C
Sbjct: 421 PEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEG-IGFNQTTLSTILKSTAGLQVVHVC 479

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  ++K+    +++V  +L+D Y KC  + DA R+FE     + V+++SM+  + Q 
Sbjct: 480 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 539

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEAL LF   Q + L+ ++F  SS++ ACA L+A  QGKQ+H  + K GF  ++FA 
Sbjct: 540 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAG 599

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SLV+MYAKCG + DA   FS + E+ +V W+ MI G ++H    + + LF +M + G+ 
Sbjct: 600 NSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVS 659

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T +SVL AC+H G+V + K YF+ M +     P   HY+CMID+LGRAG I+EA +
Sbjct: 660 PNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVE 719

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+  MPF+A AS+WG+LL + R ++++EL   AA+ LF +EP+ +G H+LL+NIYA+  +
Sbjct: 720 LVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGK 779

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WE VA  R+L+RDS+VKKE   SW+E+K        G R+H R  EIY+KL++L + M K
Sbjct: 780 WENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDK 839

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P  E DLHDVE S K+ LL HHSEKLA+ FGL+    G PIR+ KNLR+C DCH+ 
Sbjct: 840 AGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTA 899

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+  +I  RE IVRD+NRFHHF +GSCSC D+W
Sbjct: 900 FKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/402 (32%), Positives = 221/402 (54%), Gaps = 4/402 (0%)

Query: 18  SSAIASASANANATELSTLQATLQS-CARERAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
           ++AI +     N T  S   + L S C   ++   G   HA I   GL++D    N LIN
Sbjct: 40  TTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLIN 99

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            YSKC     ARK+ DE  +  +VSW+ +I  Y  NG    A+  F  M   G    +EF
Sbjct: 100 LYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEF 158

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T SSVL AC+  +D+   KQ+H   + +  + +VFV   L+ +YAKC    D+ R+F+ +
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           PERN V+W+++ + +VQ +   EA+ LF    + G++ N+F++SS++ AC GL    +GK
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
            +H  L K G+  + F+A++LVDMYAK G + DA  VF  I++ ++V WN +I+G   H 
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              + + L  +M+++G+ PN  T  S L AC+ +G+ E G+     ++K  ++  ++F  
Sbjct: 339 HHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKM-DMESDLFVS 397

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
             ++D+  +  L+ +A  +  N+  +     W ++++    Y
Sbjct: 398 VGLVDMYSKCDLLEDAR-MAFNLLPEKDLIAWNAIISGYSQY 438



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 204/358 (56%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C+  +    GK  H  ++  G   D   +N L+  Y+KC     ++++FDE+
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN +   Y       EAV LF  M+  G  P +EF++SS++ AC   RD    
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKP-NEFSLSSMVNACTGLRDSSRG 277

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H + +K   D + F   AL+D+YAK G ++DA  VFE + + + V+W++++AG V +
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E +E+AL L  + +  G+  N FT+SS + ACAG+     G+Q+H+ L K    S++F +
Sbjct: 338 EHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVS 397

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             LVDMY+KC  + DA   F+ + EK+++ WN +ISG+S++   +E + LF +M + G+ 
Sbjct: 398 VGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIG 457

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            N+ T  ++L + + + +V   +    L VK      +++  + +ID  G+   + +A
Sbjct: 458 FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS-GFHSDIYVVNSLIDSYGKCSHVEDA 514


>gi|242082860|ref|XP_002441855.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
 gi|241942548|gb|EES15693.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
          Length = 501

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/451 (52%), Positives = 321/451 (71%), Gaps = 1/451 (0%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           N  ++  L   LQ CA+ R+ + GK CH   I +GL  DT+T NIL+N Y+KCG    AR
Sbjct: 52  NLIDMFALHELLQQCAKRRSLLVGKGCHGLAIHLGLATDTITCNILMNLYTKCGRNDCAR 111

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            VFD M  R IVSWNT+I  YT +G   +A+ LF  M +EG T  SEFT+SS LCACAA+
Sbjct: 112 DVFDAMSFRSIVSWNTMIAGYTCHGDGLQALKLFSKMHQEG-TRMSEFTLSSTLCACAAE 170

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
               EC+QLH  A+K A+D N FVGTA LDVYAKC +I+DA  VFE +PE+  VTWS++ 
Sbjct: 171 NATTECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACLVFEKIPEKTAVTWSTLF 230

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           AG VQN L+++AL LF+ +Q  G++  +FT+S+++  CA LA +I+G+Q+HAV+ K GF 
Sbjct: 231 AGLVQNGLHKDALRLFQSSQREGIQLTEFTLSAILSTCASLALMIEGRQLHAVIIKYGFN 290

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            N+F ASSLVD+YA+CG + +AY VF+ ++ KNVVLWN MI+ F+RH +S E MILFEKM
Sbjct: 291 GNLFVASSLVDVYARCGQIEEAYLVFADMKHKNVVLWNAMIASFTRHGKSWEAMILFEKM 350

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           QQ+G+ PNE TY+S++S C H G+VE+ +SYF L++    V PNV HYSCM+D+L R+G 
Sbjct: 351 QQSGISPNEVTYVSMMSMCGHAGLVEEARSYFGLLISDQTVEPNVLHYSCMVDVLARSGK 410

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
             EA++LI  MPF+ T SMWGSLL SC  Y N+ +A +AA+QLF +EP+N GNH LLS++
Sbjct: 411 TDEAWELIQQMPFEPTPSMWGSLLGSCHKYMNVGIARLAAEQLFKLEPENGGNHALLSDV 470

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           YAA+  WE    ARK + D+  +K+   SWV
Sbjct: 471 YAASGSWENAVLARKHLNDTGARKDTGSSWV 501



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 167/316 (52%), Gaps = 4/316 (1%)

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           +++R  +     F +  +L  CA +R +   K  H  A+   +  +      L+++Y KC
Sbjct: 45  SLIRFDRNLIDMFALHELLQQCAKRRSLLVGKGCHGLAIHLGLATDTITCNILMNLYTKC 104

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G    A  VF++M  R+ V+W++M+AG+  +    +AL LF +    G   ++FT+SS +
Sbjct: 105 GRNDCARDVFDAMSFRSIVSWNTMIAGYTCHGDGLQALKLFSKMHQEGTRMSEFTLSSTL 164

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
           CACA   A  + +Q+H +  K    SN F  ++ +D+YAKC  + DA  VF  I EK  V
Sbjct: 165 CACAAENATTECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACLVFEKIPEKTAV 224

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W+T+ +G  ++    + + LF+  Q+ G+   E T  ++LS C+ + ++ +G+    ++
Sbjct: 225 TWSTLFAGLVQNGLHKDALRLFQSSQREGIQLTEFTLSAILSTCASLALMIEGRQLHAVI 284

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLE 422
           +K +    N+F  S ++D+  R G I EAY +  +M       +W +++AS  R+ ++ E
Sbjct: 285 IK-YGFNGNLFVASSLVDVYARCGQIEEAYLVFADMKHKNVV-LWNAMIASFTRHGKSWE 342

Query: 423 LAEIAAK-QLFGMEPD 437
              +  K Q  G+ P+
Sbjct: 343 AMILFEKMQQSGISPN 358


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/574 (43%), Positives = 374/574 (65%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++CA       G+  H+ +I M  ++D   +  L++ YSKC ++  AR+ +D M
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ I++WN +I  Y+  G   +AV+LF  M  E    +++ T+S+VL + A+ + +  C
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSE-DIDFNQTTLSTVLKSVASLQAIKVC 404

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H  ++K+ +  + +V  +LLD Y KC  I +AS++FE     + V ++SM+  + Q 
Sbjct: 405 KQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQY 464

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEAL L+ + Q   ++ + F  SS++ ACA L+A  QGKQ+H    K GF  ++FA+
Sbjct: 465 GDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFAS 524

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SLV+MYAKCG + DA   FS I  + +V W+ MI G+++H    E + LF +M + G+ 
Sbjct: 525 NSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVP 584

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T +SVL AC+H G+V +GK YF+ M     + P   HY+CMID+LGR+G ++EA +
Sbjct: 585 PNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVE 644

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+ ++PF+A   +WG+LL + R ++N+EL + AAK LF +EP+ +G H+LL+NIYA+   
Sbjct: 645 LVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGM 704

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WE VA+ RK ++DS+VKKE   SW+EIK        G R+H R  EIY+KL++L + + K
Sbjct: 705 WENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSK 764

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY    E D+H+V+ S K++LL HHSEKLA+ FGL+   PG PIR+ KNLRIC DCH+F
Sbjct: 765 AGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTF 824

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF  +I  RE IVRD+NRFHHF +GSCSC D+W
Sbjct: 825 FKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 197/345 (57%), Gaps = 2/345 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA +I  G + D    N L+  YSKC     ARK+ DE  +  +VSW++++  Y  NG  
Sbjct: 4   HAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFV 63

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ +F  M   G    +EFT  SVL AC+ KRD+   +++H  A+    + + FV   
Sbjct: 64  EEALLVFNEMCLLG-VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +YAKCGL+ D+ R+F  + ERN V+W+++ + +VQ+EL  EA+ LF+     G+  N
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           +F+IS ++ ACAGL     G+++H ++ K G   + F+A++LVDMY+K G +  A  VF 
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I   +VV WN +I+G   H  +   ++L ++M+ +G  PN  T  S L AC+ +G  E 
Sbjct: 243 DIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKEL 302

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           G+     ++K  +   ++F    ++D+  +  ++ +A     +MP
Sbjct: 303 GRQLHSSLIKM-DAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP 346



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 198/358 (55%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C+ +R    G+  H   +  G  +D   +N L+  Y+KCGL+  +R++F  +
Sbjct: 84  TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGI 143

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSWN +   Y  +    EAV LF  M+R G  P +EF++S +L ACA  ++    
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP-NEFSISIILNACAGLQEGDLG 202

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +++H   LK  +D + F   AL+D+Y+K G I  A  VF+ +   + V+W++++AG V +
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  + AL+L    +  G   N FT+SS + ACA +     G+Q+H+ L K    S++FAA
Sbjct: 263 DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAA 322

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             LVDMY+KC  + DA   +  + +K+++ WN +ISG+S+    ++ + LF KM    + 
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDID 382

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            N+ T  +VL + + +  ++  K    + +K   +  + +  + ++D  G+   I EA
Sbjct: 383 FNQTTLSTVLKSVASLQAIKVCKQIHTISIKS-GIYSDFYVINSLLDTYGKCNHIDEA 439



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 150/260 (57%), Gaps = 2/260 (0%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           +LH   +K    R+  +   L+ +Y+KC     A ++ +   E + V+WSS+++G+VQN 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
             EEAL++F    +LG++ N+FT  SV+ AC+    L  G++VH +   TGF S+ F A+
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV MYAKCG + D+  +F GI E+NVV WN + S + +     E + LF++M ++G+ P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           NE +   +L+AC+ +   + G+    LM+K    L + F  + ++D+  +AG I  A  +
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDL-DQFSANALVDMYSKAGEIEGAVAV 240

Query: 396 ILNMPFDATASMWGSLLASC 415
             ++      S W +++A C
Sbjct: 241 FQDIAHPDVVS-WNAIIAGC 259



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 7/305 (2%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           S + S   + N T LST+   L+S A  +A    K  H   I  G+ +D    N L++ Y
Sbjct: 374 SKMFSEDIDFNQTTLSTV---LKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTY 430

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
            KC  I  A K+F+E     +V++ ++I +Y+  G  +EA+ L++ M      P   F  
Sbjct: 431 GKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKP-DPFIC 489

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           SS+L ACA      + KQLHV A+K     ++F   +L+++YAKCG I DA R F  +P 
Sbjct: 490 SSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPN 549

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           R  V+WS+M+ G+ Q+   +EAL LF +    G+  N  T+ SV+CAC     + +GKQ 
Sbjct: 550 RGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQY 609

Query: 259 HAVL-CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHA 316
              +    G        + ++D+  + G + +A  + + I  E +  +W  ++ G +R  
Sbjct: 610 FEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALL-GAARIH 668

Query: 317 RSVEV 321
           +++E+
Sbjct: 669 KNIEL 673


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/553 (44%), Positives = 364/553 (65%), Gaps = 9/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H+ ++ M + +D   S  L++ YSKC L+  AR  F+ +P++ +++WN II  Y+    +
Sbjct: 355 HSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWED 414

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            EA++LF+ M +EG   +++ T+S++L + A  + V  C+Q+H  ++K+    +++V  +
Sbjct: 415 MEALSLFVEMHKEG-IGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 473

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D Y KC  + DA R+FE     + V+++SM+  + Q    EEAL LF   Q + L+ +
Sbjct: 474 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 533

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           +F  SS++ ACA L+A  QGKQ+H  + K GF  ++FA +SLV+MYAKCG + DA   FS
Sbjct: 534 RFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFS 593

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            + E+ +V W+ MI G ++H    + + LF +M + G+ PN  T +SVL AC+H G+V +
Sbjct: 594 ELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTE 653

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
            K YF+ M +     P   HY+CMID+LGRAG I+EA +L+  MPF+A AS+WG+LL + 
Sbjct: 654 AKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 713

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R ++++EL   AA+ LF +EP+ +G H+LL+NIYA+  +WE VA  R+L+RDS+VKKE  
Sbjct: 714 RIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPG 773

Query: 476 KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            SW+E+K        G R+H R  EIY+KL++L + M K GY P  E DLHDVE S K+ 
Sbjct: 774 MSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKEL 833

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           LL HHSEKLA+ FGL+    G PIR+ KNLR+C DCH+  K+  +I  RE IVRD+NRFH
Sbjct: 834 LLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFH 893

Query: 588 HFTNGSCSCWDFW 600
           HF +GSCSC D+W
Sbjct: 894 HFKDGSCSCGDYW 906



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 177/314 (56%), Gaps = 2/314 (0%)

Query: 18  SSAIASASANANATELSTLQATLQS-CARERAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
           ++AI +     N T  S   + L S C   ++   G   HA I   GL++D    N LIN
Sbjct: 40  TTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLIN 99

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            YSKC     ARK+ DE  +  +VSW+ +I  Y  NG    A+  F  M   G    +EF
Sbjct: 100 LYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEF 158

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T SSVL AC+  +D+   KQ+H   + +  + +VFV   L+ +YAKC    D+ R+F+ +
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           PERN V+W+++ + +VQ +   EA+ LF    + G++ N+F++SS++ AC GL    +GK
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
            +H  L K G+  + F+A++LVDMYAK G + DA  VF  I++ ++V WN +I+G   H 
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 317 RSVEVMILFEKMQQ 330
              + + L  +M++
Sbjct: 339 HHEQALELLGQMKR 352



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 216/420 (51%), Gaps = 38/420 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L + + +C   R   RGK+ H  +I +G + D  ++N L++ Y+K G ++ A  VF+++
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKI 319

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            Q  IVSWN +I     +   ++A+ L   M R                           
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR--------------------------- 352

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            QLH   +K  M+ ++FV   L+D+Y+KC L+ DA   F  +PE++ + W+++++G+ Q 
Sbjct: 353 -QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL LF      G+ +NQ T+S+++ + AGL  +   +QVH +  K+GF S+++  
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+D Y KC  V DA  +F      ++V + +MI+ ++++ +  E + LF +MQ   L 
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE--- 391
           P+     S+L+AC+++   E+GK     ++K   VL ++F  + ++++  + G I +   
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL-DIFAGNSLVNMYAKCGSIDDAGR 590

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A+  +      + ++M G L       + L+L     K+  G+ P    NH+ L ++  A
Sbjct: 591 AFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKE--GVSP----NHITLVSVLGA 644



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 166/311 (53%), Gaps = 4/311 (1%)

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
           E       +N++ +G    +  + S +L  C   + +    Q+H    K+ +  +  +  
Sbjct: 36  EDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRN 95

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
            L+++Y+KC     A ++ +   E + V+WS++++G+ QN L   AL+ F    +LG++ 
Sbjct: 96  HLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKC 155

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N+FT SSV+ AC+ +  L  GKQVH V+  +GF  ++F A++LV MYAKC   +D+  +F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             I E+NVV WN + S + +     E + LF +M  +G+ PNE +  S+++AC+ +    
Sbjct: 216 DEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSS 275

Query: 355 KGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +GK     ++K  ++  P  F  + ++D+  + G + +A  +   +      S W +++A
Sbjct: 276 RGKIIHGYLIKLGYDWDP--FSANALVDMYAKVGDLADAISVFEKIKQPDIVS-WNAVIA 332

Query: 414 SCRNYRNLELA 424
            C  + + E A
Sbjct: 333 GCVLHEHHEQA 343



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L +CA   A  +GK  H  I+  G   D    N L+N Y+KCG I  A + F E+ +R
Sbjct: 539 SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTER 598

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            IVSW+ +IG    +G  ++A+ LF  ML+EG +P +  T+ SVL AC     V E K  
Sbjct: 599 GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSP-NHITLVSVLGACNHAGLVTEAKLY 657

Query: 158 -----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
                 +F  K   +        ++D+  + G I++A  +   MP E N   W +++ 
Sbjct: 658 FESMEELFGFKPMQEHY----ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 711


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/595 (40%), Positives = 385/595 (64%), Gaps = 15/595 (2%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           ++ S  A+  ASA  +  E     A + +C   RA   G+  HA++I             
Sbjct: 28  RAASGMALPGASARFHEYE-----AAITACIERRALWEGRQVHARMITARYRPAVFLGTR 82

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L+  Y +CG +  AR V D MP+R +VSW T+I  Y+   R  EA+ LFI MLR G  P 
Sbjct: 83  LVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIP- 141

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           +E+T+++VL +C+  + +++ KQ+H   +K   + ++FVG++LLD+YAK   I +A RVF
Sbjct: 142 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVF 201

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           +++PER+ V+ +++++G+ Q  L EEAL LFR+    G++ N  T ++++ A +GLA+L 
Sbjct: 202 DTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLD 261

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            GKQVHA++ +      +   +SL+DMY+KCG ++ +  VF  + E++VV WN M+ G+ 
Sbjct: 262 YGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYG 321

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           RH    EV+ LF+ + +  + P+  T ++VLS CSH G+V++G   FD +VK+ + L + 
Sbjct: 322 RHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHT 380

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY C+ID+LGR+G + +A +LI NMPF++T S+WGSLL +CR + N+ + E+ A++L  
Sbjct: 381 GHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLE 440

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKR 485
           MEP+NAGN+++LSNIYAA   W++V + RKL+ +  V KE  +SW+ +          +R
Sbjct: 441 MEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSER 500

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
            HP   +I +K++++  ++K  G+ P+    LHDV+D +K+ +L+ HSEKLA+TFGLM  
Sbjct: 501 FHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNT 560

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG+ IR+MKNLRIC DCH+F KF S++  RE  +RD NRFH  T+G+C+C D+W
Sbjct: 561 PPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/589 (41%), Positives = 382/589 (64%), Gaps = 15/589 (2%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           A+  ASA  +  E     A + +C   RA   G+  HA++I             L+  Y 
Sbjct: 2   ALPGASARFHEYE-----AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYV 56

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
           +CG +  AR V D MP+R +VSW T+I  Y+   R  EA+ LFI MLR G  P +E+T++
Sbjct: 57  RCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIP-NEYTLA 115

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           +VL +C+  + +++ KQ+H   +K   + ++FVG++LLD+YAK   I +A RVF+++PER
Sbjct: 116 TVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPER 175

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V+ +++++G+ Q  L EEAL LFR+    G++ N  T ++++ A +GLA+L  GKQVH
Sbjct: 176 DVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVH 235

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A++ +      +   +SL+DMY+KCG ++ +  VF  + E++VV WN M+ G+ RH    
Sbjct: 236 ALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGH 295

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           EV+ LF+ + +  + P+  T ++VLS CSH G+V++G   FD +VK+ + L +  HY C+
Sbjct: 296 EVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCI 354

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           ID+LGR+G + +A +LI NMPF++T S+WGSLL +CR + N+ + E+ A++L  MEP+NA
Sbjct: 355 IDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENA 414

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           GN+++LSNIYAA   W++V + RKL+ +  V KE  +SW+ +          +R HP   
Sbjct: 415 GNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKK 474

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           +I +K++++  ++K  G+ P+    LHDV+D +K+ +L+ HSEKLA+TFGLM   PG+ I
Sbjct: 475 DINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTI 534

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+MKNLRIC DCH+F KF S++  RE  +RD NRFH  T+G+C+C D+W
Sbjct: 535 RVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/576 (42%), Positives = 363/576 (63%), Gaps = 10/576 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           + T  + L++CA +     GK  H ++I  G+N D+   N L+N Y+KCG  + A KVF 
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 250

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           E+P+R +VSW  +I  +   G     + +F  ML EG  P + +T  S+L +C++  DV 
Sbjct: 251 EIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNP-NMYTFISILRSCSSLSDVD 308

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             KQ+H   +K ++D N FVGTAL+D+YAK   + DA  +F  + +R+   W+ +VAG+ 
Sbjct: 309 LGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 368

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q+   E+A+  F + Q  G++ N+FT++S +  C+ +A L  G+Q+H++  K G   +MF
Sbjct: 369 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 428

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            AS+LVDMYAKCGCV DA  VF G+  ++ V WNT+I G+S+H +  + +  FE M   G
Sbjct: 429 VASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEG 488

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             P+E T+I VLSACSH+G++E+GK +F+ + K + + P + HY+CM+DILGRAG  HE 
Sbjct: 489 TVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEV 548

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
              I  M   +   +W ++L +C+ + N+E  E AA +LF +EP+   N++LLSN++AA 
Sbjct: 549 ESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAK 608

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
             W++V   R L+    VKKE   SWVE+ G+         +HP+I EI+ KL+ L +++
Sbjct: 609 GMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKL 668

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
             +GY P T+H LH+V D  KQELL +HSE+LAL F L+       IRI KNLRICGDCH
Sbjct: 669 MSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCH 728

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            FMK  S I  +E +VRD+N FHHF NGSCSC +FW
Sbjct: 729 DFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 182/341 (53%), Gaps = 3/341 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA +   G  +D L SN  +  Y K   +    + F  M    + S N ++  +  
Sbjct: 109 GESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCD 168

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
                +   + I +L EG  P + +T  S+L  CA+K D+ E K +H   +K+ ++ +  
Sbjct: 169 TETCDQGPRILIQLLVEGFEP-NMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSH 227

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +  +L++VYAKCG  + A +VF  +PER+ V+W++++ GFV  E Y   L +F +    G
Sbjct: 228 LWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA-EGYGSGLRIFNQMLAEG 286

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              N +T  S++ +C+ L+ +  GKQVHA + K     N F  ++LVDMYAK   + DA 
Sbjct: 287 FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 346

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F+ + ++++  W  +++G+++  +  + +  F +MQ+ G+ PNE T  S LS CS I 
Sbjct: 347 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 406

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            ++ G+    + +K      ++F  S ++D+  + G + +A
Sbjct: 407 TLDSGRQLHSMAIKAGQS-GDMFVASALVDMYAKCGCVEDA 446



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 180/356 (50%), Gaps = 4/356 (1%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           ++I  G+  D+   + L+N Y KC  +  AR+V +EMP + +  WN  + S  +    QE
Sbjct: 14  RVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQE 73

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           AV LF  ++R  +   ++F  +S++ A A+  D    + +H    K   + ++ +  A +
Sbjct: 74  AVQLFY-LMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFV 132

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
            +Y K   + +  + F++M   N  + +++++GF   E  ++   +  +  V G E N +
Sbjct: 133 TMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMY 192

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T  S++  CA    L +GK +H  + K+G   +    +SLV++YAKCG    A  VF  I
Sbjct: 193 TFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI 252

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            E++VV W  +I+GF        + I F +M   G +PN  T+IS+L +CS +  V+ GK
Sbjct: 253 PERDVVSWTALITGFVAEGYGSGLRI-FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK 311

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
                +VK +++  N F  + ++D+  +   + +A + I N         W  ++A
Sbjct: 312 QVHAQIVK-NSLDGNDFVGTALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVA 365


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/557 (40%), Positives = 360/557 (64%), Gaps = 9/557 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H +I   GL  +      L+  Y+KCG IS A+ +FD++P++ +V+W  +I  Y  
Sbjct: 216 GQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQ 275

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G+   A+ L   M +    P ++ T +S+L  C     +   K++H + +++   R ++
Sbjct: 276 QGQVDVALELLEKMQQAEVAP-NKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIW 334

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  AL+ +Y KCG + +A ++F  +P R+ VTW++MV G+ Q   ++EA+ LFRR Q  G
Sbjct: 335 VVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG 394

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ ++ T +S + +C+  A L +GK +H  L   G+  +++  S+LV MYAKCG + DA 
Sbjct: 395 IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDAR 454

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF+ + E+NVV W  MI+G ++H R  E +  FE+M++ G+ P++ T+ SVLSAC+H+G
Sbjct: 455 LVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVG 514

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+G+ +F  M   + + P V HYSC +D+LGRAG + EA ++IL MPF    S+WG+L
Sbjct: 515 LVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGAL 574

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L++CR + ++E  E AA+ +  ++PD+ G ++ LSNIYAA  R+E+  + R+++   +V 
Sbjct: 575 LSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVV 634

Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           KE  +SW+E+ GK        ++HP   EIY++L KL E++K+ GY P+T   LHDV++ 
Sbjct: 635 KEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEE 694

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
           +K + L  HSE+LA+T+GLM   PG PIRI+KNLR+CGDCH+  KF S++ GRE I RD 
Sbjct: 695 QKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDA 754

Query: 584 NRFHHFTNGSCSCWDFW 600
           +RFHHF +G CSC DFW
Sbjct: 755 HRFHHFVDGVCSCGDFW 771



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 239/465 (51%), Gaps = 11/465 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
              +  LQ CAR R+  +G+  HA I+  G+  +    N L++ Y+KCG ++ AR+VFD 
Sbjct: 97  DVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDG 156

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R IVSW  +I ++    +  EA   +  M   G  P  + T  S+L A      +  
Sbjct: 157 IRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKP-DKVTFVSLLNAFTNPELLQV 215

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H+   KA ++    VGT+L+ +YAKCG IS A  +F+ +PE+N VTW+ ++AG+ Q
Sbjct: 216 GQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQ 275

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               + AL L  + Q   +  N+ T +S++  C    AL  GK+VH  + ++G+G  ++ 
Sbjct: 276 QGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV 335

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MY KCG + +A  +F  +  ++VV W  M++G+++     E + LF +MQQ G+
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI 395

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T+ S L++CS    +++GKS    +V     L +V+  S ++ +  + G + +A 
Sbjct: 396 KPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL-DVYLQSALVSMYAKCGSMDDAR 454

Query: 394 DLILNMPFDATASMWGSLLASC----RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            L+ N   +     W +++  C    R    LE  E   KQ  G++PD      +LS   
Sbjct: 455 -LVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQ--GIKPDKVTFTSVLSACT 511

Query: 450 AANRRWEEVARARKLIRDSEVKK--EKSKSWVEIKGKRNHPRIAE 492
                 E     R +  D  +K   E    +V++ G+  H   AE
Sbjct: 512 HVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAE 556



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 154/289 (53%), Gaps = 2/289 (0%)

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            GR +EA+ +   M+ +G   YS+     +L  CA  R + + +++H   LK+ +  N +
Sbjct: 74  QGRLKEALGILNTMILQGTRVYSD-VFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +   LL +YAKCG ++DA RVF+ + +RN V+W++M+  FV      EA   +   ++ G
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            + ++ T  S++ A      L  G++VH  + K G        +SLV MYAKCG +  A 
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  + EKNVV W  +I+G+++  +    + L EKMQQA + PN+ TY S+L  C+   
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPL 312

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            +E GK     ++ Q      ++  + +I +  + G + EA  L  ++P
Sbjct: 313 ALEHGKKVHRYII-QSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 3/284 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + LQ C    A   GK  H  II  G   +    N LI  Y KCG +  ARK+F ++
Sbjct: 300 TYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDL 359

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+W  ++  Y   G   EA+ LF  M ++G  P  + T +S L +C++   + E 
Sbjct: 360 PHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKP-DKMTFTSALTSCSSPAFLQEG 418

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   + A    +V++ +AL+ +YAKCG + DA  VF  M ERN V W++M+ G  Q+
Sbjct: 419 KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQH 478

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFA 273
               EAL  F + +  G++ ++ T +SV+ AC  +  + +G K   ++    G    +  
Sbjct: 479 GRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 538

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHA 316
            S  VD+  + G + +A  V   +  +    +W  ++S    H+
Sbjct: 539 YSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHS 582


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/596 (40%), Positives = 374/596 (62%), Gaps = 14/596 (2%)

Query: 17  SSSAIASASANANATELST----LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
           S+  I     + +A EL+       + + +CAR R+    +  HA + G          N
Sbjct: 44  STGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDN 103

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            LI+ Y KCG ++ AR+VFD MP R + SW ++I  Y  N    EA+ L   MLR G+  
Sbjct: 104 SLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLR-GRFK 162

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
            + FT +S+L A  A       +Q+H   +K     +V+VG+ALLD+YA+CG +  A  V
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ +  +N V+W++++AGF +    E  L++F   Q  G E   FT SSV  A AG+ AL
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            QGK VHA + K+G   + F  ++++DMYAK G ++DA  VF  +++K+VV WN+M++ F
Sbjct: 283 EQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAF 342

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           +++    E +  FE+M++ G+H N+ T++S+L+ACSH G+V++GK YFD+M K++N+ P 
Sbjct: 343 AQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPE 401

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           + HY  ++D+LGRAGL+++A   I  MP   TA++WG+LL SCR ++N ++ + AA  +F
Sbjct: 402 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVF 461

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GK 484
            ++PD+ G  +LL NIYA+  +W+  AR RK+++ + VKKE + SWVEI+          
Sbjct: 462 ELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAND 521

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
             HPR  EIY K E++  +++K GY P T++ L  V++  +Q  L +HSEK+AL F L+ 
Sbjct: 522 DTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALIN 581

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  G  IRIMKN+RICGDCHS  ++ S++  RE +VRD NRFHHF++GSCSC D+W
Sbjct: 582 MPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/579 (41%), Positives = 366/579 (63%), Gaps = 11/579 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E     + L  C  + A   G+  HA +I             LI  Y+KC  +  AR+V 
Sbjct: 9   EFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVL 68

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           DEMP+R +VSW  +I  Y+  G   EA+ LF+ ML  G  P +EFT ++VL +C +    
Sbjct: 69  DEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAP-NEFTFATVLTSCTSSSGF 127

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              +Q+H   +K + + ++FVG++LLD+YAK G I +A RVF+ +PER+ V+ +++++G+
Sbjct: 128 QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 187

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            Q  L EEAL LFRR Q  G+  N  T +SV+ A +GLAAL  G+QVH+ + +      +
Sbjct: 188 AQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 247

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              +SL+DMY+KCG +  +  +F  + E+ V+ WN M+ G+S+H    E + LF+ M++ 
Sbjct: 248 VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEE 307

Query: 332 G-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL-PNVFHYSCMIDILGRAGLI 389
             + P+  T+++VLS CSH GM ++G   F  MV Q +   P + HY C++D+ GRAG +
Sbjct: 308 NKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 367

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA++ I  MPF+ TA++WGSLL +CR ++N+ + E  A++L  +E +NAGN+++LSN+Y
Sbjct: 368 EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 427

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           A+  RW++V   R+L+++  V KE  +SW+E+           R+HPR  E+++K+ +L 
Sbjct: 428 ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 487

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            ++K+ GY PE    L+DV+D +K+++L  HSEKLAL FGL+C   G P+RI+KNLRIC 
Sbjct: 488 IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 547

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+F KF SR+ GRE  +RD NRFHH   G+CSC D+W
Sbjct: 548 DCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 1/172 (0%)

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
           + GLE       SV+  C    A+ +G++VHA + KT +   ++  + L+ +Y KC C+ 
Sbjct: 3   IQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLG 62

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           DA  V   + E+NVV W  MISG+S+   + E + LF +M  +G  PNE T+ +VL++C+
Sbjct: 63  DARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCT 122

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
                + G+    L++K  +   ++F  S ++D+  +AG I EA  +   +P
Sbjct: 123 SSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 387/608 (63%), Gaps = 13/608 (2%)

Query: 1   MKSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKII 60
           + SL+R+         ++S++A   A+A         A + +C   +A   G+  HA ++
Sbjct: 12  VSSLVRWDMSVVAARHAASSLAVPGADA---RFHDYDAAITACVERQALGEGRQVHAHMV 68

Query: 61  GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
                     +  LI  Y +CG +  AR V D MP+R +VSW  +I  Y+ +GR  EA+ 
Sbjct: 69  KARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALE 128

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           LFI MLR G    +EFT+++VL +C   + + + +Q+H   +K   + ++FVG++LLD+Y
Sbjct: 129 LFIRMLRAG-CKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMY 187

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
            K G I +A +VF+ +PER+ V+ +++++G+ Q  L +EAL LFR+    G++ N  T +
Sbjct: 188 GKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFT 247

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           +++ + +GLA+L  GKQVH ++ +      +   +SL+DMY+KCG ++ +  VF  + ++
Sbjct: 248 TLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQR 307

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           + + WN M+ G+ RH    EV+ LF  M +  + P+  T ++VLS CSH G+V++G   F
Sbjct: 308 SAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIF 366

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
           DL+VK+ N + ++ HY C+ID+LGR+G + +A DLI +MPF+ T ++WGSLL +CR + N
Sbjct: 367 DLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHIN 426

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           + + E+ A++L  MEP NAGN+++LSNIYAA   W++V R RKL+ ++ V KE +KSW+ 
Sbjct: 427 VSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWII 486

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           +          +R HPR  +I +K++++  ++K  G+ P+    LHDV+D +K+ +L+ H
Sbjct: 487 LDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGH 546

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+TFGLM   PG+ I++MKNLRIC DCH+F KF S++ GRE  +RD NRFH   +G
Sbjct: 547 SEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDG 606

Query: 593 SCSCWDFW 600
           +C+C D+W
Sbjct: 607 ACTCGDYW 614


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/569 (41%), Positives = 372/569 (65%), Gaps = 10/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C   +  ++G++ HA I+     +D +  N L+N Y+KCG +  ARKVF++MPQR  
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W T+I  Y+ + R  +A+  F  MLR G +P +EFT+SSV+ A AA+R      QLH 
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSP-NEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F +K   D NV VG+ALLD+Y + GL+ DA  VF+++  RN+V+W++++AG  +    E+
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF+     G   + F+ +S+  AC+    L QGK VHA + K+G     FA ++L+D
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAK G + DA  +F  + +++VV WN++++ +++H    E +  FE+M++ G+ PNE +
Sbjct: 306 MYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEIS 365

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++SVL+ACSH G++++G  Y++LM K+  ++P  +HY  ++D+LGRAG ++ A   I  M
Sbjct: 366 FLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEM 424

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA++W +LL +CR ++N EL   AA+ +F ++PD+ G H++L NIYA+  RW + A
Sbjct: 425 PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAA 484

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R RK +++S VKKE + SWVEI+            HP+  EI  K E+++ ++K+LGY P
Sbjct: 485 RVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVP 544

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T H +  V+   ++  L +HSEK+AL F L+   PG  I I KN+R+CGDCH+ +K AS
Sbjct: 545 DTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLAS 604

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++ GRE IVRD NRFHHF +G+CSC D+W
Sbjct: 605 KVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 2/291 (0%)

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           N L     P      +++L  C   + + + + +H   L++    ++ +G  LL++YAKC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + +A +VFE MP+R+ VTW+++++G+ Q++   +AL+ F +    G   N+FT+SSVI
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            A A       G Q+H    K GF SN+   S+L+D+Y + G + DA  VF  +E +N V
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN +I+G +R + + + + LF+ M + G  P+  +Y S+  ACS  G +E+GK     M
Sbjct: 229 SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYM 288

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +K    L   F  + ++D+  ++G IH+A  +   +      S W SLL +
Sbjct: 289 IKSGEKLV-AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTA 337



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 147/282 (52%), Gaps = 2/282 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + +++ A ER    G   H   +  G +++    + L++ Y++ GL+  A+ VFD +
Sbjct: 163 TLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL 222

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSWN +I  +      ++A+ LF  MLR+G  P S F+ +S+  AC++   + + 
Sbjct: 223 ESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRP-SHFSYASLFGACSSTGFLEQG 281

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H + +K+      F G  LLD+YAK G I DA ++F+ + +R+ V+W+S++  + Q+
Sbjct: 282 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EA+  F   + +G+  N+ +  SV+ AC+    L +G   + ++ K G     +  
Sbjct: 342 GFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHY 401

Query: 275 SSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
            ++VD+  + G +  A  F+     E    +W  +++    H
Sbjct: 402 VTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/579 (41%), Positives = 366/579 (63%), Gaps = 11/579 (1%)

Query: 32   ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
            E     + L  C  + A   G+  HA +I             LI  Y+KC  +  AR+V 
Sbjct: 476  EFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVL 535

Query: 92   DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            DEMP+R +VSW  +I  Y+  G   EA+ LF+ ML  G  P +EFT ++VL +C +    
Sbjct: 536  DEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAP-NEFTFATVLTSCTSSSGF 594

Query: 152  FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
               +Q+H   +K + + ++FVG++LLD+YAK G I +A RVF+ +PER+ V+ +++++G+
Sbjct: 595  QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 654

Query: 212  VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             Q  L EEAL LFRR Q  G+  N  T +SV+ A +GLAAL  G+QVH+ + +      +
Sbjct: 655  AQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 714

Query: 272  FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
               +SL+DMY+KCG +  +  +F  + E+ V+ WN M+ G+S+H    E + LF+ M++ 
Sbjct: 715  VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEE 774

Query: 332  G-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL-PNVFHYSCMIDILGRAGLI 389
              + P+  T+++VLS CSH GM ++G   F  MV Q +   P + HY C++D+ GRAG +
Sbjct: 775  NKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 834

Query: 390  HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
             EA++ I  MPF+ TA++WGSLL +CR ++N+ + E  A++L  +E +NAGN+++LSN+Y
Sbjct: 835  EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 894

Query: 450  AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
            A+  RW++V   R+L+++  V KE  +SW+E+           R+HPR  E+++K+ +L 
Sbjct: 895  ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 954

Query: 502  EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
             ++K+ GY PE    L+DV+D +K+++L  HSEKLAL FGL+C   G P+RI+KNLRIC 
Sbjct: 955  IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 1014

Query: 562  DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH+F KF SR+ GRE  +RD NRFHH   G+CSC D+W
Sbjct: 1015 DCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 101/187 (54%), Gaps = 4/187 (2%)

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   +EAL+      + GLE       SV+  C    A+ +G++VHA + KT +   ++ 
Sbjct: 458 NRQLKEALL---EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYL 514

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + L+ +Y KC C+ DA  V   + E+NVV W  MISG+S+   + E + LF +M  +G 
Sbjct: 515 RTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGT 574

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PNE T+ +VL++C+     + G+    L++K  +   ++F  S ++D+  +AG I EA 
Sbjct: 575 APNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEAR 633

Query: 394 DLILNMP 400
            +   +P
Sbjct: 634 RVFDGLP 640


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/558 (40%), Positives = 364/558 (65%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H +I+  GL  +      L+  Y+KCG IS AR +FD +P++ +V+W  +I  Y  
Sbjct: 167 GQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQ 226

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G+   A+ L   M +    P ++ T +S+L  C     +   K++H + +++   R ++
Sbjct: 227 QGQVDVALELLETMQQAEVAP-NKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELW 285

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  +L+ +Y KCG + +A ++F  +P R+ VTW++MV G+ Q   ++EA+ LFRR Q  G
Sbjct: 286 VVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQG 345

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ ++ T +SV+ +C+  A L +GK++H  L   G+  +++  S+LV MYAKCG + DA 
Sbjct: 346 IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDAS 405

Query: 292 FVFSGIEEKNVVLWNTMISGF-SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            VF+ + E+NVV W  +I+G  ++H R  E +  F++M++ G+ P++ T+ SVLSAC+H+
Sbjct: 406 LVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHV 465

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G+VE+G+ +F  M   + + P V HYSC +D+LGRAG + EA ++IL+MPF    S+WG+
Sbjct: 466 GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGA 525

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL++CR + ++E  E AA+ +  ++PD+ G ++ LS+IYAA  R+E+  + R+++   +V
Sbjct: 526 LLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDV 585

Query: 471 KKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
            KE  +SW+E+ GK        ++HP   +IY +L KL E++K++GY P+T   LHDV++
Sbjct: 586 VKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDE 645

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
            +K+ +L  HSE+LA+T+GLM   PG+PIRI+KNLR+CGDCH+  KF S++ GRE I RD
Sbjct: 646 EQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARD 705

Query: 583 LNRFHHFTNGSCSCWDFW 600
             RFHHF +G CSC DFW
Sbjct: 706 AQRFHHFADGVCSCGDFW 723



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 241/466 (51%), Gaps = 12/466 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
              +  LQ CAR R+  +G+  HA I+  G+  +    N L++ Y+KCG ++ AR+VFD 
Sbjct: 48  DVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDS 107

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R IVSW  +I ++    +  EA   +  M   G  P  + T  S+L A      +  
Sbjct: 108 IRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKP-DKVTFVSLLNAFTNPELLQL 166

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H+  ++A ++    VGT+L+ +YAKCG IS A  +F+ +PE+N VTW+ ++AG+ Q
Sbjct: 167 GQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQ 226

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               + AL L    Q   +  N+ T +S++  C   AAL  GK+VH  + ++G+G  ++ 
Sbjct: 227 QGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV 286

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +SL+ MY KCG + +A  +FS +  ++VV W  M++G+++     E + LF +MQQ G+
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T+ SVL++CS    +++GK     +V     L +V+  S ++ +  + G + +A 
Sbjct: 347 KPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL-DVYLQSALVSMYAKCGSMDDA- 404

Query: 394 DLILNMPFDATASMWGSLLASC-----RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
            L+ N   +     W +++  C     R    LE  +   KQ  G++PD      +LS  
Sbjct: 405 SLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQ--GIKPDKVTFTSVLSAC 462

Query: 449 YAANRRWEEVARARKLIRDSEVKK--EKSKSWVEIKGKRNHPRIAE 492
                  E     R +  D  +K   E    +V++ G+  H   AE
Sbjct: 463 THVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAE 508



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 154/289 (53%), Gaps = 2/289 (0%)

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            GR +EA+ +   M+ +G   YS+     +L  CA  R + + +++H   LK+ +  N +
Sbjct: 25  TGRLKEALGIMNTMILQGTRVYSD-VFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +   LL +YAKCG ++DA RVF+S+ +RN V+W++M+  FV      EA   +   ++ G
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            + ++ T  S++ A      L  G++VH  + + G        +SLV MYAKCG +  A 
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  + EKNVV W  +I+G+++  +    + L E MQQA + PN+ T+ S+L  C+   
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            +E GK     ++ Q      ++  + +I +  + G + EA  L  ++P
Sbjct: 264 ALEHGKKVHRYII-QSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 12/281 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + LQ C    A   GK  H  II  G   +    N LI  Y KCG +  ARK+F ++
Sbjct: 251 TFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDL 310

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+W  ++  Y   G   EA+ LF  M ++G  P  + T +SVL +C++   + E 
Sbjct: 311 PHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKP-DKMTFTSVLTSCSSPAFLQEG 369

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG-FVQ 213
           K++H   + A  + +V++ +AL+ +YAKCG + DAS VF  M ERN V W++++ G   Q
Sbjct: 370 KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQ 429

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMF 272
           +    EAL  F + +  G++ ++ T +SV+ AC  +  + +G K   ++    G    + 
Sbjct: 430 HGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 489

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
             S  VD+  + G + +A         +NV+L    I G S
Sbjct: 490 HYSCFVDLLGRAGHLEEA---------ENVILSMPFIPGPS 521


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 360/574 (62%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C    A  +GK  HA+I+    ++D   S  L   Y KCG +  AR+VF+ +
Sbjct: 248 TYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECL 307

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +++WNT+IG    +G+ +EA  +F  ML+E   P    T  ++L ACA    +   
Sbjct: 308 PNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAP-DRVTYLAILSACARPGGLACG 366

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H  A+K  +  +V  G AL+++Y+K G + DA +VF+ MP+R+ V+W+++V G+   
Sbjct: 367 KEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADC 426

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               E+   F++    G+E N+ T   V+ AC+   AL  GK++HA + K G  +++  A
Sbjct: 427 GQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVA 486

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MY KCG V DA  V  G+  ++VV WNT+I G +++ R +E +  FE M+   + 
Sbjct: 487 NALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMR 546

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+++V+SAC    +VE+G+  F  M K + ++P   HY+CM+DIL RAG + EA D
Sbjct: 547 PNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAED 606

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           +IL MPF  +A+MWG+LLA+CR + N+E+ E AA+Q   +EP NAG ++ LS IYAA   
Sbjct: 607 VILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGM 666

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W +VA+ RKL+++  VKKE  +SW+E+ G+        ++HPR  EIYS+LE L +++K 
Sbjct: 667 WRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKS 726

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P+T   +HD++   K+  + HHSEKLA+ +GL+   P  PIR+ KNLR+C DCH+ 
Sbjct: 727 LGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTA 786

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S+I GRE I RD +RFHHF NG CSC D+W
Sbjct: 787 TKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 208/374 (55%), Gaps = 3/374 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQSC + +    GK  H  I+  G+  +    N L+  Y  CG ++ AR++FD+   + +
Sbjct: 51  LQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSV 110

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWN +I  Y   G  QEA  LF  M +EG  P  +FT  S+L AC++   +   +++HV
Sbjct: 111 VSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEP-DKFTFVSILSACSSPAALNWGREVHV 169

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             ++A +  N  VG AL+ +YAKCG + DA RVF++M  R+EV+W+++   + ++   +E
Sbjct: 170 RVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQE 229

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           +L  +      G+  ++ T  +V+ AC  LAAL +GKQ+HA + ++   S++  +++L  
Sbjct: 230 SLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTK 289

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY KCG V DA  VF  +  ++V+ WNTMI G     +  E   +F +M +  + P+  T
Sbjct: 290 MYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVT 349

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           Y+++LSAC+  G +  GK      VK   ++ +V   + +I++  +AG + +A  +   M
Sbjct: 350 YLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRM 408

Query: 400 PFDATASMWGSLLA 413
           P     S W +L+ 
Sbjct: 409 PKRDVVS-WTALVG 421



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 210/389 (53%), Gaps = 4/389 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+   A   G+  H +++  GL N+    N LI+ Y+KCG +  AR+VFD M
Sbjct: 147 TFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAM 206

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSW T+ G+Y  +G  QE++  +  ML+EG  P S  T  +VL AC +   + + 
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRP-SRITYMNVLSACGSLAALEKG 265

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   +++    +V V TAL  +Y KCG + DA  VFE +P R+ + W++M+ G V +
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDS 325

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA  +F R     +  ++ T  +++ ACA    L  GK++HA   K G  S++   
Sbjct: 326 GQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFG 385

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+K G + DA  VF  + +++VV W  ++ G++   + VE    F+KM Q G+ 
Sbjct: 386 NALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVE 445

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            N+ TY+ VL ACS+   ++ GK     +VK   +  ++   + ++ +  + G + +A  
Sbjct: 446 ANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GIFADLAVANALMSMYFKCGSVEDAIR 504

Query: 395 LILNMPFDATASMWGSLLAS-CRNYRNLE 422
           +   M      + W +L+    +N R LE
Sbjct: 505 VSEGMSTRDVVT-WNTLIGGLAQNGRGLE 532



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 4/308 (1%)

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           A A  +  L +  +    +    +L +C   +D+   KQ+H   L+  M  NV++   LL
Sbjct: 27  APADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLL 86

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
            +Y  CG +++A R+F+    ++ V+W+ M++G+    L +EA  LF   Q  GLE ++F
Sbjct: 87  KLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKF 146

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T  S++ AC+  AAL  G++VH  + + G  +N    ++L+ MYAKCG V DA  VF  +
Sbjct: 147 TFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAM 206

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             ++ V W T+   ++    + E +  +  M Q G+ P+  TY++VLSAC  +  +EKGK
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGK 266

Query: 358 SYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
                +V+ +H+   +V   + +  +  + G + +A ++   +P +     W +++    
Sbjct: 267 QIHAQIVESEHH--SDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGGLV 323

Query: 417 NYRNLELA 424
           +   LE A
Sbjct: 324 DSGQLEEA 331



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 160/318 (50%), Gaps = 8/318 (2%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T  A L +CAR      GK  HA+ +  GL +D    N LIN YSK G +  AR+
Sbjct: 344 APDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQ 403

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD MP+R +VSW  ++G Y   G+  E+ + F  ML++G    ++ T   VL AC+   
Sbjct: 404 VFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQG-VEANKITYMCVLKACSNPV 462

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            +   K++H   +KA +  ++ V  AL+ +Y KCG + DA RV E M  R+ VTW++++ 
Sbjct: 463 ALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIG 522

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFG 268
           G  QN    EAL  F   +   +  N  T  +V+ AC     + +G++  A + K  G  
Sbjct: 523 GLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIV 582

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEK 327
                 + +VD+ A+ G + +A  V   +  K +  +W  +++    H     V I  + 
Sbjct: 583 PTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHG---NVEIGEQA 639

Query: 328 MQQA-GLHP-NEQTYISV 343
            +Q   L P N  TY+S+
Sbjct: 640 AEQCLKLEPQNAGTYVSL 657


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/595 (40%), Positives = 373/595 (62%), Gaps = 14/595 (2%)

Query: 17  SSSAIASASANANATELST----LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
           S+  I     + +A EL+       + + +CAR R+    +  HA + G          N
Sbjct: 44  STGIIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDN 103

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            LI+ Y KCG ++ AR+VFD MP R + SW ++I  Y  N    EA+ L   MLR G+  
Sbjct: 104 SLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLR-GRFK 162

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
            + FT +S+L A  A       +Q+H   +K     +V+VG+ALLD+YA+CG +  A  V
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ +  +N V+W++++AGF +    E  L++F   Q  G E   FT SSV  A AG+ AL
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            QGK VHA + K+G   + F  ++++DMYAK G ++DA  VF  +++K+VV WN+M++ F
Sbjct: 283 EQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAF 342

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           +++    E +  FE+M++ G+H N+ T++S+L+ACSH G+V++GK YFD+M K++N+ P 
Sbjct: 343 AQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPE 401

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           + HY  ++D+LGRAGL+++A   I  MP   TA++WG+LL SCR ++N ++ + AA  +F
Sbjct: 402 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVF 461

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GK 484
            ++PD+ G  +LL NIYA+  +W+  AR RK+++ + VKKE + SWVEI+          
Sbjct: 462 ELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAND 521

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
             HPR  EIY K E++  +++K GY P T++ L  V++  +Q  L +HSEK+AL F L+ 
Sbjct: 522 DTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALIN 581

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           +  G  IRIMKN+RICGDCHS  ++ S++  RE +VRD NRFHHF++GSCSC D+
Sbjct: 582 MPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/569 (42%), Positives = 364/569 (63%), Gaps = 10/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C   R   +G+  HA I      +D +  N ++N Y+KCG +  A+ +FD+MP + +
Sbjct: 112 LNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDM 171

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  +I  Y+ +G+  EA+ALF  ML  G  P +EFT+SS+L A          +QLH 
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQP-NEFTLSSLLKASGTGPSDHHGRQLHA 230

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F+LK   D NV VG++LLD+YA+   + +A  +F S+  +N V+W++++AG  +    E 
Sbjct: 231 FSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEH 290

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            + LF +    G E   FT SSV  ACA   +L QGK VHA + K+G     +  ++L+D
Sbjct: 291 VMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLID 350

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAK G + DA  VF  + ++++V WN++ISG+++H    E + LFE+M +A + PNE T
Sbjct: 351 MYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEIT 410

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++SVL+ACSH G++++G+ YF+LM K+H +   V H+  ++D+LGRAG ++EA   I  M
Sbjct: 411 FLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEM 469

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P   TA++WG+LL SCR ++N++L   AA+Q+F ++P ++G H+LLSNIYA+  R  + A
Sbjct: 470 PIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAA 529

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           + RK++++S VKKE + SWVEI+ +         +HP   EI    EK+  ++K++GY P
Sbjct: 530 KVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVP 589

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T H L  +    ++  L +HSEKLAL F ++   PG+ IRI KN+RICGDCHS  KFAS
Sbjct: 590 DTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFAS 649

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+ GRE IVRD NRFHHF +G CSC D+W
Sbjct: 650 RVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 143/254 (56%), Gaps = 1/254 (0%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           S +L  C   R + + + +H     +  + ++ +   +L++YAKCG + +A  +F+ MP 
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPT 168

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           ++ V+W+ +++G+ Q+    EAL LF +   LG + N+FT+SS++ A     +   G+Q+
Sbjct: 169 KDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL 228

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA   K G+  N+   SSL+DMYA+   + +A  +F+ +  KNVV WN +I+G +R    
Sbjct: 229 HAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEG 288

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
             VM LF +M + G  P   TY SV +AC+  G +E+GK     ++K     P  +  + 
Sbjct: 289 EHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ-PIAYIGNT 347

Query: 379 MIDILGRAGLIHEA 392
           +ID+  ++G I +A
Sbjct: 348 LIDMYAKSGSIKDA 361



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 146/282 (51%), Gaps = 2/282 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++     +   G+  HA  +  G + +    + L++ Y++   +  A+ +F+ +
Sbjct: 208 TLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWN +I  +   G  +  + LF+ MLR+G  P + FT SSV  ACA+   + + 
Sbjct: 268 AAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEP-THFTYSSVFTACASSGSLEQG 326

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +K+      ++G  L+D+YAK G I DA +VF  + +++ V+W+S+++G+ Q+
Sbjct: 327 KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH 386

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  EAL LF +     ++ N+ T  SV+ AC+    L +G+    ++ K    + +   
Sbjct: 387 GLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHH 446

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMISGFSRH 315
            ++VD+  + G + +A  F+     +    +W  ++     H
Sbjct: 447 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMH 488


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/575 (42%), Positives = 358/575 (62%), Gaps = 9/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++CA   A   G+  H  ++    + D   +  L++ Y+K G +  ARKVFD M
Sbjct: 308 TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG-KTPYSEFTVSSVLCACAAKRDVFE 153
           P+R ++ WN +I   + +GR  E ++LF  M +EG     +  T++SVL + A+   +  
Sbjct: 368 PRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICH 427

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+H  A K  +  +  V   L+D Y KCG +  A +VF+     + ++ ++M+    Q
Sbjct: 428 TRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQ 487

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +  E+A+ LF +    GLE + F +SS++ AC  L+A  QGKQVHA L K  F S++FA
Sbjct: 488 CDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFA 547

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV  YAKCG + DA   FSG+ E+ +V W+ MI G ++H      + LF +M   G+
Sbjct: 548 GNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGV 607

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T  SVLSAC+H G+V+  K YF+ M +   +     HY+CMIDILGRAG + +A 
Sbjct: 608 APNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAM 667

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           +L+ NMPF A A++WG+LL + R +R+ EL  +AA++LF +EP+ +G H+LL+N YA+  
Sbjct: 668 ELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAG 727

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            W+E+A+ RKL++DS VKKE + SWVEIK        G ++HP   +IY KL +L + M 
Sbjct: 728 MWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMN 787

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K GY P  E DLHDV+ S K+ LL HHSE+LA+ F L+    G PIR+ KNLRIC DCH 
Sbjct: 788 KAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHV 847

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K+ S+I  RE I+RD+NRFHHFTNG+CSC D+W
Sbjct: 848 AFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 201/385 (52%), Gaps = 12/385 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L      R+   G   H+ ++  GL      SN L+  YS+C L S AR VFDE+
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEI 63

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P  C VSW++++ +Y+ NG  ++A+  F  M   G  P +EF +  VL  CA   DV   
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRG-VPCNEFALPVVL-KCAP--DVRFG 119

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM----PERNEVTWSSMVAG 210
            Q+H  A+   +  +VFV  AL+ VY   G++ +A R+F+       ERN V+W++M++ 
Sbjct: 120 AQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISA 179

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V+N+   +A+ +FR     G   N+F  S V+ AC G   L  G+QVH  + +TG+  +
Sbjct: 180 YVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKD 239

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F A++LVDMY+K G +  A  VF  +   +VV WN  ISG   H      + L  +M+ 
Sbjct: 240 VFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKS 299

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           +GL PN  T  SVL AC+  G    G+     MVK      + F    ++D+  + G + 
Sbjct: 300 SGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADF-DEFVAVGLVDMYAKHGFLD 358

Query: 391 EAYDLILNMPFDATASMWGSLLASC 415
           +A  +   MP      +W +L++ C
Sbjct: 359 DARKVFDFMP-RRDLILWNALISGC 382



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 170/303 (56%), Gaps = 7/303 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM----PQRCIVSWNTIIG 107
           G   HA  +   L +D   +N L+  Y   G++  AR++FDE      +R  VSWNT+I 
Sbjct: 119 GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMIS 178

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
           +Y  N +  +A+ +F  M+  G+ P +EF  S V+ AC   RD+   +Q+H   ++   +
Sbjct: 179 AYVKNDQSGDAIGVFREMVWSGERP-NEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYE 237

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           ++VF   AL+D+Y+K G I  A+ VFE MP  + V+W++ ++G V +     AL L  + 
Sbjct: 238 KDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQM 297

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  GL  N FT+SSV+ ACAG  A   G+Q+H  + K     + F A  LVDMYAK G +
Sbjct: 298 KSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFL 357

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG--LHPNEQTYISVLS 345
            DA  VF  +  ++++LWN +ISG S   R  EV+ LF +M++ G  L  N  T  SVL 
Sbjct: 358 DDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLK 417

Query: 346 ACS 348
           + +
Sbjct: 418 STA 420



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 151/291 (51%), Gaps = 6/291 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + L+S A   A    +  HA    +GL +D+   N LI+ Y KCG +  A KVF E
Sbjct: 410 TTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE 469

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                I+S  T++ + +     ++A+ LF+ MLR+G  P S F +SS+L AC +     +
Sbjct: 470 SRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDS-FVLSSLLNACTSLSAYEQ 528

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     +VF G AL+  YAKCG I DA   F  +PER  V+WS+M+ G  Q
Sbjct: 529 GKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQ 588

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   + AL LF R    G+  N  T++SV+ AC   A L+   + +    K  FG +   
Sbjct: 589 HGHGKRALDLFHRMLDEGVAPNHITLTSVLSAC-NHAGLVDDAKKYFESMKETFGIDRTE 647

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
              + ++D+  + G + DA  + + +  + N  +W  ++ G SR  R  E+
Sbjct: 648 EHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALL-GASRVHRDPEL 697


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/601 (41%), Positives = 363/601 (60%), Gaps = 23/601 (3%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           AS  A A ++ L++L   L+SCA       G   HA  +  G   D   +N L+N Y K 
Sbjct: 47  ASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKL 106

Query: 82  G--------------LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
                          ++   RKVFDEMP++ +VSWNT++     +GR  EA+ L   M R
Sbjct: 107 PAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWR 166

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
           +G  P S FT+SSVL   A   DV    +LH FA +     +VFVG++L+D+YA C    
Sbjct: 167 DGCKPDS-FTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTD 225

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
            + +VF+++P R+ + W+SM+AG  QN   +EAL LFRR    G++    T SS+I AC 
Sbjct: 226 YSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACG 285

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            LA+L+ GKQ+HA + + GF  N+F +SSL+DMY KCG V  A  +F  I+  ++V W  
Sbjct: 286 NLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTA 345

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI G + H  + E ++LF++M+   L PN  T+++VL+ACSH G+V+KG  YF+ M   +
Sbjct: 346 MIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHY 405

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            ++P++ H++ + D LGR G + EAY+ I  M    TAS+W +LL +C+ ++N  LAE  
Sbjct: 406 GIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEV 465

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--- 484
           AK++F +EP + G+H++LSN Y+++ RW E A  RK +R   ++KE + SW+E+K K   
Sbjct: 466 AKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHV 525

Query: 485 -----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
                ++HP    I   L    E+M + GY P T+    D+E+ +K  +L  HSEKLA+ 
Sbjct: 526 FVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIV 585

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FG++   PG  IR+MKNLR+C DCH+  KF S+I GRE ++RD NRFHHF +G CSC DF
Sbjct: 586 FGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDF 645

Query: 600 W 600
           W
Sbjct: 646 W 646


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/563 (42%), Positives = 364/563 (64%), Gaps = 11/563 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           L+ C R     +G++ HA ++    L+N  +  NI++N Y+KCG +  AR++FDEMP + 
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +V+W  +I  ++ N R ++A+ LF  MLR G  P + FT+SS+L A  ++  +    QLH
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQP-NHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F LK     +V+VG+AL+D+YA+CG +  A   F+ MP ++EV+W+++++G  +    E
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGE 272

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
            AL L  + Q    +   FT SSV+ ACA + AL QGK VHA + K+G     F  ++L+
Sbjct: 273 HALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLL 332

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           DMYAK G + DA  VF  + + +VV WNTM++G ++H    E +  FE+M + G+ PNE 
Sbjct: 333 DMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEI 392

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           +++ VL+ACSH G++++G  YF+LM K++ V P+V HY   +D+LGR GL+  A   I  
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP + TA++WG+LL +CR ++N+EL   AA++ F ++P ++G  +LLSNIYA+  RW +V
Sbjct: 452 MPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDV 511

Query: 459 ARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYK 510
           A+ RK++++S VKK+ + SWVEI+            HPRI EI  K E++  ++K++GY 
Sbjct: 512 AKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYV 571

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
           P+T H L  V+   ++E L +HSEKLAL F L+    G PIRI KN+R+CGDCH+ +KF 
Sbjct: 572 PDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFV 631

Query: 571 SRIAGRETIVRDLNRFHHFTNGS 593
           S++  RE IVRD NRFH F +GS
Sbjct: 632 SKVVDREIIVRDTNRFHRFRDGS 654



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 146/290 (50%), Gaps = 3/290 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++   E     G   HA  +  G  +     + L++ Y++CG +  A+  FD M
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P +  VSWN +I  +   G  + A+ L   M R+   P + FT SSVL ACA+   + + 
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQP-THFTYSSVLSACASIGALEQG 309

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +K+ +    F+G  LLD+YAK G I DA RVF+ + + + V+W++M+ G  Q+
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L +E L  F +   +G+E N+ +   V+ AC+    L +G     ++ K     ++   
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHY 429

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
            + VD+  + G +  A  F+     E    +W  ++ G  R  +++E+ +
Sbjct: 430 VTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL-GACRMHKNMELGV 478



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 6/195 (3%)

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS-LV 278
           AL L +R  ++  +YN +  S ++  C  L  + QG+ VHA L  + F  N     + +V
Sbjct: 74  ALDLIQRGSLVP-DYNLY--SKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           +MYAKCGC+ DA  +F  +  K++V W  +I+GFS++ R  + ++LF +M + G  PN  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHF 190

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  S+L A      ++ G       +K +    +V+  S ++D+  R G +  A      
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLK-YGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 399 MPFDATASMWGSLLA 413
           MP  +  S W +L++
Sbjct: 250 MPTKSEVS-WNALIS 263


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/569 (41%), Positives = 370/569 (65%), Gaps = 10/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C   +   +G++ H  +I     +D + +N L+N Y+KCG +  ARKVFD+MP+R  
Sbjct: 58  LKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDF 117

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W T+I  Y+ + R  +A+ LF  MLR G +P +EFT+SSV+ A AA+R      QLH 
Sbjct: 118 VTWTTLISGYSQHDRPFDALVLFNQMLRFGFSP-NEFTLSSVIKAAAAERRGCCGHQLHG 176

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F +K   D NV VG+ALLD+Y + GL+ DA  VF+++  RN+V+W++++AG  +    E+
Sbjct: 177 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEK 236

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF+     G   + F+ +S+  AC+    L QGK VHA + K+G     FA ++L+D
Sbjct: 237 ALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 296

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAK G + DA  +F  + +++VV WN++++ +++H    E +  FE+M++ G+ PNE +
Sbjct: 297 MYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEIS 356

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++SVL+ACSH G++++G  Y++LM K+  ++   +HY  ++D+LGRAG ++ A   I  M
Sbjct: 357 FLSVLTACSHSGLLDEGWHYYELM-KKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEM 415

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA++W +LL +CR ++N EL   AA+ +F ++PD+ G H++L NIYA+  RW + A
Sbjct: 416 PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAA 475

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R RK +++S VKKE + SWVEI+            HP+  EI  K E+++ ++K+LGY P
Sbjct: 476 RVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVP 535

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T H +  V+   ++  L +HSEK+AL F L+   PG  I I KN+R+CGDCHS +K AS
Sbjct: 536 DTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLAS 595

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  GRE IVRD NRFHHF +G+CSC D+W
Sbjct: 596 KAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 163/300 (54%), Gaps = 2/300 (0%)

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
           + E++    N L     P      +++L  C   + + + + +H   +++    ++ +  
Sbjct: 31  DDESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNN 90

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
            LL++YAKCG + +A +VF+ MPER+ VTW+++++G+ Q++   +AL+LF +    G   
Sbjct: 91  TLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSP 150

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N+FT+SSVI A A       G Q+H    K GF SN+   S+L+D+Y + G + DA  VF
Sbjct: 151 NEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVF 210

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             +E +N V WN +I+G +R   + + + LF+ M + G  P+  +Y S+  ACS  G +E
Sbjct: 211 DALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLE 270

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +GK     M+K    L   F  + ++D+  ++G IH+A  +   +      S W SLL +
Sbjct: 271 QGKWVHAYMIKSGEKLV-AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTA 328



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 145/282 (51%), Gaps = 2/282 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + +++ A ER    G   H   +  G +++    + L++ Y++ GL+  A+ VFD +
Sbjct: 154 TLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL 213

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSWN +I  +      ++A+ LF  MLREG  P S F+ +S+  AC++   + + 
Sbjct: 214 ESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRP-SHFSYASLFGACSSTGFLEQG 272

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H + +K+      F G  LLD+YAK G I DA ++F+ + +R+ V+W+S++  + Q+
Sbjct: 273 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 332

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA+  F   +  G+  N+ +  SV+ AC+    L +G   + ++ K G     +  
Sbjct: 333 GFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHY 392

Query: 275 SSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
            ++VD+  + G +  A  F+     E    +W  +++    H
Sbjct: 393 VTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 434


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/579 (42%), Positives = 372/579 (64%), Gaps = 16/579 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L   A + A  +G   H  +I  GL++     N ++N YSK  ++S A+ VFD M
Sbjct: 195 TFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM 254

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSWN++I  + TNG + EA  LF  M  EG    ++   ++V+  CA  +++   
Sbjct: 255 ENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG-VKLTQTIFATVIKLCANIKEMSFA 313

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFVQ 213
           KQLH   +K   D ++ + TAL+  Y+KC  I DA ++F  M   +N V+W+++++G+VQ
Sbjct: 314 KQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQ 373

Query: 214 NELYEEALILF---RRAQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFGS 269
           N   + A+ LF   RR +  G+E N+FT SSV+ ACA   A + QGKQ H+   K+GF +
Sbjct: 374 NGRTDRAMNLFCQMRREE--GVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSN 431

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            +  +S+LV MYAK G +  A  VF    ++++V WN+MISG+++H    + + +FE+M+
Sbjct: 432 ALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMR 491

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
              L  +  T+I V+SAC+H G+V +G+ YFDLMVK ++++P + HYSCM+D+  RAG++
Sbjct: 492 SKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGML 551

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            +A DLI  MPF A A++W +LLA+CR + N++L E+AA++L  ++P ++  ++LLSNIY
Sbjct: 552 EKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIY 611

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           A    W+E A+ RKL+   +VKKE   SW+E+K        G  +HP+   IY KLE+L 
Sbjct: 612 ATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELS 671

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
             +K  GY P+T++ LHDVE+  K+ +L  HSE+LA+ FGL+   PG PI+I+KNLR+CG
Sbjct: 672 IRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCG 731

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +K  S+I GR+ +VRD NRFHHF  GSCSC D+W
Sbjct: 732 DCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 193/342 (56%), Gaps = 4/342 (1%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           + + T+ S+L   L+ C      + GK  H + I  G   D      L++ Y K   +  
Sbjct: 86  SGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVED 145

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
             +VFDEM  + +VSW +++  Y  NG  ++A+ LF  M  EG  P + FT ++VL   A
Sbjct: 146 GERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKP-NPFTFAAVLGGLA 204

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           A   V +  Q+H   +K+ +D  +FVG +++++Y+K  ++SDA  VF+SM  RN V+W+S
Sbjct: 205 ADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNS 264

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+AGFV N L  EA  LF R ++ G++  Q   ++VI  CA +  +   KQ+H  + K G
Sbjct: 265 MIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNG 324

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILF 325
              ++   ++L+  Y+KC  + DA+ +F  +   +NVV W  +ISG+ ++ R+   M LF
Sbjct: 325 SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLF 384

Query: 326 EKM-QQAGLHPNEQTYISVLSAC-SHIGMVEKGKSYFDLMVK 365
            +M ++ G+ PNE T+ SVL+AC +    VE+GK +    +K
Sbjct: 385 CQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK 426



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 166/289 (57%), Gaps = 11/289 (3%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           ++++FDE PQ+ +   N ++  ++ N + +EA+ LF+ + R G +P    ++S VL  C 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSG-SPTDGSSLSCVLKVCG 103

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              D    KQ+H   +K     +V VGT+L+D+Y K   + D  RVF+ M  +N V+W+S
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           ++AG+ QN L E+AL LF + Q+ G++ N FT ++V+   A   A+ +G QVH ++ K+G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             S +F  +S+V+MY+K   V DA  VF  +E +N V WN+MI+GF  +   +E   LF 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 327 KMQQAGLHPNEQTYISVLSACSHIG----------MVEKGKSYFDLMVK 365
           +M+  G+   +  + +V+  C++I            V K  S FDL +K
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/615 (39%), Positives = 386/615 (62%), Gaps = 20/615 (3%)

Query: 4   LLRYKHKFYYKSFSSSAIASASANA------NATELS----TLQATLQSCARERAPVRGK 53
           LL Y+H   Y S +++ + +ASA        +A EL+         + +CA+ +     +
Sbjct: 12  LLLYRHTRPYTSTAANPVPAASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDAR 71

Query: 54  VCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
             HA +       D    N LI+ Y KCG +  ARKVFDEM ++ +VSW ++I  Y  N 
Sbjct: 72  KVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQND 131

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
             +EA+ L   ML+ G+   + FT +S+L A  A  D    +Q+H  A+K     +V+VG
Sbjct: 132 MPEEAIGLLPGMLK-GRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVG 190

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           +ALLD+YA+CG++  A+ VF+ +  +N V+W+++++GF +    E AL+ F      G E
Sbjct: 191 SALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFE 250

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
              FT SSV  + A L AL QGK VHA + K+      FA ++L+DMYAK G ++DA  V
Sbjct: 251 ATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKV 310

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +++K++V WNTM++ F+++    E +  FE+M+++G++ N+ T++ +L+ACSH G+V
Sbjct: 311 FDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLV 370

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           ++GK YF++M K++++ P + H+  ++ +LGRAGL++ A   I  MP + TA++WG+LLA
Sbjct: 371 KEGKRYFEMM-KEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLA 429

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
           +CR ++N ++ + AA  +F ++PD++G  +LL NIYA+  +W+  AR R++++ + VKKE
Sbjct: 430 ACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKE 489

Query: 474 KSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
            + SWVE        +     HPR  EIY    ++ ++++K GY P+ ++ L  V+D  +
Sbjct: 490 PACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQER 549

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           +  L +HSEKLAL F L+ +  G  IRIMKN+RICGDCHS  K+ S++ GRE +VRD NR
Sbjct: 550 EANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNR 609

Query: 586 FHHFTNGSCSCWDFW 600
           FHHF+NGSCSC D+W
Sbjct: 610 FHHFSNGSCSCADYW 624


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/569 (42%), Positives = 365/569 (64%), Gaps = 11/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C   R   +G+  HA I      +D +  N ++N Y+KCG +  A+ +FD+MP + +
Sbjct: 112 LNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDM 171

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  +I  Y+ +G+  EA+ALF  ML  G  P +EFT+SS+L A          +QLH 
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQP-NEFTLSSLLKASGTGPSDHHGRQLHA 230

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F+LK   D NV VG++LLD+YA+   + +A  +F S+  +N V+W++++AG  +    E 
Sbjct: 231 FSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEH 290

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            + LF +    G E   FT SSV+ ACA   +L QGK VHA + K+G     +  ++L+D
Sbjct: 291 VMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLID 349

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAK G + DA  VF  + ++++V WN++ISG+++H    E + LFE+M +A + PNE T
Sbjct: 350 MYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEIT 409

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++SVL+ACSH G++++G+ YF+LM K+H +   V H+  ++D+LGRAG ++EA   I  M
Sbjct: 410 FLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEM 468

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P   TA++WG+LL +CR ++N++L   AA+Q+F ++P ++G H+LLSNIYA+  R  + A
Sbjct: 469 PIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAA 528

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           + RK++++S VKKE + SWVEI+ +         +HP   EI    EK+  ++K++GY P
Sbjct: 529 KVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVP 588

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T H L  +    ++  L +HSEKLAL F ++   PG+ IRI KN+RICGDCHS  KFAS
Sbjct: 589 DTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFAS 648

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+ GRE IVRD NRFHHF +G CSC D+W
Sbjct: 649 RVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 143/254 (56%), Gaps = 2/254 (0%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           S +L  C   R + + + +H     +  + ++ +   +L++YAKCG + +A  +F+ MP 
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPT 168

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           ++ V+W+ +++G+ Q+    EAL LF +   LG + N+FT+SS++ A     +   G+Q+
Sbjct: 169 KDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL 228

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA   K G+  N+   SSL+DMYA+   + +A  +F+ +  KNVV WN +I+G +R    
Sbjct: 229 HAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEG 288

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
             VM LF +M + G  P   TY SVL AC+  G +E+GK     ++K     P  +  + 
Sbjct: 289 EHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQ-PIAYIGNT 346

Query: 379 MIDILGRAGLIHEA 392
           +ID+  ++G I +A
Sbjct: 347 LIDMYAKSGSIKDA 360



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 146/282 (51%), Gaps = 3/282 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++     +   G+  HA  +  G + +    + L++ Y++   +  A+ +F+ +
Sbjct: 208 TLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSL 267

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWN +I  +   G  +  + LF  MLR+G  P + FT SSVL ACA+   + + 
Sbjct: 268 AAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEP-THFTYSSVL-ACASSGSLEQG 325

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +K+      ++G  L+D+YAK G I DA +VF  + +++ V+W+S+++G+ Q+
Sbjct: 326 KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH 385

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  EAL LF +     ++ N+ T  SV+ AC+    L +G+    ++ K    + +   
Sbjct: 386 GLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHH 445

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMISGFSRH 315
            ++VD+  + G + +A  F+     +    +W  ++     H
Sbjct: 446 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMH 487


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/574 (40%), Positives = 354/574 (61%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C    A  +GK  HA I+    ++D   S  L   Y KCG    AR+VF+ +
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +++WNT+I  +  +G+ +EA   F  ML EG  P    T ++VL ACA    +   
Sbjct: 292 SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAP-DRATYTTVLSACARPGGLARG 350

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H  A K  +  +V  G AL+++Y+K G + DA +VF+ MP+R+ V+W++++  +   
Sbjct: 351 KEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADC 410

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +   E+   F++    G++ N+ T   V+ AC+   AL  GK++HA + K G  +++   
Sbjct: 411 DQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVT 470

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MY KCG V DA  VF G+  ++VV WNT+I G  ++ R +E +  +E M+  G+ 
Sbjct: 471 NALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMR 530

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+++VLSAC    +VE+G+  F  M K + ++P   HY+CM+DIL RAG + EA D
Sbjct: 531 PNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAED 590

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           +IL +P   +A+MWG+LLA+CR + N+E+ E AA+    +EP NAG ++ LS IYAA   
Sbjct: 591 VILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGM 650

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W +VA+ RK +++  VKKE  +SW+EI G+        ++HPR  EIY++LE L ++MK 
Sbjct: 651 WRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKS 710

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P+T   +HD++D  K+  + HHSEKLA+ +GL+   PG PIRI KNLR+C DCH+ 
Sbjct: 711 LGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTA 770

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S+I  RE I RD +RFHHF NG CSC D+W
Sbjct: 771 TKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 208/374 (55%), Gaps = 3/374 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQSC + +    GK  H  I+  G+  +   +N L+  Y+ CG ++ AR++FD+   + +
Sbjct: 35  LQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSV 94

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWN +I  Y   G  QEA  LF  M +E   P  +FT  S+L AC++   +   +++HV
Sbjct: 95  VSWNVMISGYAHRGLAQEAFNLFTLMQQERLEP-DKFTFVSILSACSSPAVLNWGREIHV 153

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             ++A +  +  VG AL+ +YAKCG + DA RVF++M  R+EV+W+++   + ++   EE
Sbjct: 154 RVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEE 213

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           +L  +       +  ++ T  +V+ AC  LAAL +GKQ+HA + ++ + S++  +++L  
Sbjct: 214 SLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTK 273

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY KCG   DA  VF  +  ++V+ WNTMI GF    +  E    F +M + G+ P+  T
Sbjct: 274 MYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRAT 333

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           Y +VLSAC+  G + +GK       K   ++ +V   + +I++  +AG + +A  +   M
Sbjct: 334 YTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRM 392

Query: 400 PFDATASMWGSLLA 413
           P     S W +LL 
Sbjct: 393 PKRDVVS-WTTLLG 405



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 218/407 (53%), Gaps = 5/407 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+       G+  H +++  GL NDT   N LI+ Y+KCG +  AR+VFD M
Sbjct: 131 TFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAM 190

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSW T+ G+Y  +G  +E++  +  ML+E   P S  T  +VL AC +   + + 
Sbjct: 191 ASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRP-SRITYMNVLSACGSLAALEKG 249

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   +++    +V V TAL  +Y KCG   DA  VFE +  R+ + W++M+ GFV +
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDS 309

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA   F R    G+  ++ T ++V+ ACA    L +GK++HA   K G  S++   
Sbjct: 310 GQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFG 369

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+K G + DA  VF  + +++VV W T++  ++   + VE    F++M Q G+ 
Sbjct: 370 NALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVK 429

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            N+ TY+ VL ACS+   ++ GK     +VK   +L ++   + ++ +  + G + +A  
Sbjct: 430 ANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GLLADLAVTNALMSMYFKCGSVEDAIR 488

Query: 395 LILNMPFDATASMWGSLLASC-RNYRNLE-LAEIAAKQLFGMEPDNA 439
           +   M      + W +L+    +N R LE L      +  GM P+ A
Sbjct: 489 VFEGMSMRDVVT-WNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAA 534



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 158/313 (50%), Gaps = 10/313 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A + +T    L +CAR     RGK  HA+    GL +D    N LIN YSK G +  AR+
Sbjct: 328 APDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQ 387

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD MP+R +VSW T++G Y    +  E+   F  ML++G    ++ T   VL AC+   
Sbjct: 388 VFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQG-VKANKITYMCVLKACSNPV 446

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            +   K++H   +KA +  ++ V  AL+ +Y KCG + DA RVFE M  R+ VTW++++ 
Sbjct: 447 ALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIG 506

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFG 268
           G  QN    EAL  +   +  G+  N  T  +V+ AC     + +G++  A + K  G  
Sbjct: 507 GLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIV 566

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRH------ARSVEV 321
                 + +VD+ A+ G + +A  V   I  K +  +W  +++    H       R+ E 
Sbjct: 567 PTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEH 626

Query: 322 MILFEKMQQAGLH 334
            +  E  Q AGL+
Sbjct: 627 CLKLEP-QNAGLY 638



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 158/309 (51%), Gaps = 6/309 (1%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L +C   +D+   KQ+H   L+  +  NV++   LL +YA CG +++A ++F+    ++
Sbjct: 34  LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKS 93

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            V+W+ M++G+    L +EA  LF   Q   LE ++FT  S++ AC+  A L  G+++H 
Sbjct: 94  VVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHV 153

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
            + + G  ++    ++L+ MYAKCG V DA  VF  +  ++ V W T+   ++      E
Sbjct: 154 RVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEE 213

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            +  +  M Q  + P+  TY++VLSAC  +  +EKGK     +V +     +V   + + 
Sbjct: 214 SLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIV-ESEYHSDVRVSTALT 272

Query: 381 DILGRAGLIHEAYDLILNMPF-DATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPD 437
            +  + G   +A ++   + + D  A  W +++    +   LE A     ++   G+ PD
Sbjct: 273 KMYMKCGAFKDAREVFECLSYRDVIA--WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPD 330

Query: 438 NAGNHLLLS 446
            A    +LS
Sbjct: 331 RATYTTVLS 339



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 6/176 (3%)

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G + + +    ++ +C     L  GKQVH  + + G   N++  ++L+ +YA CG V +A
Sbjct: 23  GPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEA 82

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F     K+VV WN MISG++    + E   LF  MQQ  L P++ T++S+LSACS  
Sbjct: 83  RQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSP 142

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
            ++  G+    + V +  +  +    + +I +  + G + +A  +     FDA AS
Sbjct: 143 AVLNWGRE-IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRV-----FDAMAS 192


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/584 (40%), Positives = 370/584 (63%), Gaps = 14/584 (2%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           NA A E+      L+ C        GK+ HA ++     +D +  N L+N Y+KCG +  
Sbjct: 11  NAGAREIC--HTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVY 68

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           ARK+FDEM  R +V+W  +I  Y+ + R Q+A+ L   MLR G  P ++FT++S+L A +
Sbjct: 69  ARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKP-NQFTLASLLKAAS 127

Query: 147 A--KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
                DV + +QLH   L+   D NV+V  A+LD+YA+C  + +A  +F+ M  +NEV+W
Sbjct: 128 GVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSW 187

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           ++++AG+ +    ++A  LF       ++   FT SSV+CACA + +L QGK VHA++ K
Sbjct: 188 NALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIK 247

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            G     F  ++L+DMYAK G + DA  VF  + +++VV WN+M++G+S+H      +  
Sbjct: 248 WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQR 307

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           FE+M +  + PN+ T++ VL+ACSH G++++G+ YFD+M K++NV P + HY  M+D+LG
Sbjct: 308 FEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMM-KKYNVEPQISHYVTMVDLLG 366

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG +  A   I  MP   TA++WG+LL +CR ++N+EL   AA+ +F ++    G H+L
Sbjct: 367 RAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVL 426

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSK 496
           L NIYA   RW + A+ RK++++S VKKE + SWVE++ + +        HP+  EI++ 
Sbjct: 427 LYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNM 486

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
            E++ +++K++GY P++ H L  ++   ++  L +HSEKLAL F L+   PG  IRI KN
Sbjct: 487 WEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKN 546

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +RICGDCHS  KF S++  RE IVRD NRFHHF +G+CSC D+W
Sbjct: 547 IRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/570 (43%), Positives = 353/570 (61%), Gaps = 12/570 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L S  R R+ ++G+  HA II  GL    L  + LINFYSK  L   + +VF+E  ++  
Sbjct: 61  LLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSS 120

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE-FTVSSVLCACAAKRDVFECKQLH 158
            +W+++I S+  N     A+  F  M+ E   P    F  ++  CA   + DV   K +H
Sbjct: 121 TTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDV--GKSVH 178

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +K   D +VFVG++L+D+YAKCG I +A  VF+ MP RN V+WS M+ G+ Q   +E
Sbjct: 179 CLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHE 238

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA+ LF+ A + GL+ N FT+SSVI  C     L  GKQ+H +  KT +  + F  SSL+
Sbjct: 239 EAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLI 298

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            +Y+KCG +  AY VF  +  KN+ +WN M+   ++HA + E   LF KM+ AG+ PN  
Sbjct: 299 SLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFI 358

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T++ VL ACSH G+VE+GK YF LM K++ + P   HY+ M+D+LGRAG + EA  +I  
Sbjct: 359 TFLCVLYACSHAGLVEEGKKYFALM-KKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKG 417

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP + T S+WG+ +  CR + N +LA  AA ++F +   ++G H++LSN YAA  R+E+ 
Sbjct: 418 MPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDA 477

Query: 459 ARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYK 510
           A+ARK++RD  VKKE   SW+E          G R H R+ EIY KLE L EEM++ GY 
Sbjct: 478 AKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYV 537

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
            +T   L +V    K + + +HSE+LA+ FGL+ +  G PIRIMKNLR+CGDCH+ +KF 
Sbjct: 538 ADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFI 597

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S+++GR  IVRD NRFH F +G CSC D+W
Sbjct: 598 SKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 140/281 (49%), Gaps = 2/281 (0%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +  +L +    R + + +Q+H   +K+ +     V   L++ Y+K  L   +S+VFE   
Sbjct: 57  ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
            ++  TWSS+++ F QNE    A+  F R     L  +     S   ACA L     GK 
Sbjct: 117 RKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKS 176

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH ++ KTG+  ++F  SSLVDMYAKCG + +A  VF  +  +NVV W+ MI G+++   
Sbjct: 177 VHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGE 236

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             E M LF++    GL  N+ T  SV+  C    ++E GK    L  K    L   F  S
Sbjct: 237 HEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSG-FVGS 295

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            +I +  + GLI  AY +   +P      MW ++L +C  +
Sbjct: 296 SLISLYSKCGLIEGAYRVFDEVPIK-NLGMWNAMLIACAQH 335



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 2/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + ++ C        GK  H        +      + LI+ YSKCGLI GA +VFDE+
Sbjct: 258 TLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEV 317

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P + +  WN ++ +   +   +EA  LF  M   G  P +  T   VL AC+    V E 
Sbjct: 318 PIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRP-NFITFLCVLYACSHAGLVEEG 376

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           K+      K  ++       +++D+  + G + +A  V + MP E  E  W + + G
Sbjct: 377 KKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITG 433


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/601 (40%), Positives = 374/601 (62%), Gaps = 12/601 (1%)

Query: 11  FYYKSFSSSAIAS---ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
           F  +S  S A+AS     A+    + +   + L+SC        G+  H  I+ +G++ D
Sbjct: 80  FTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCD 139

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
             T N L+N YSK   I   RKVF+ MP++ +VS+NT+I  Y  +G  ++A+ +   M  
Sbjct: 140 LYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGT 199

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
               P   FT+SSVL   +   DV + K++H + ++  +D +V++G++L+D+YAK   I 
Sbjct: 200 SDLKP-DAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
           D+ RVF  +  R+ ++W+S+VAG+VQN  Y EAL LFR+     +       SSVI ACA
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            LA L  GKQ+H  + + GFG N+F AS+LVDMY+KCG +  A  +F  +   + V W  
Sbjct: 319 HLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTA 378

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           +I G + H    E + LFE+M++ G+ PN+  +++VL+ACSH+G+V++   YF+ M K +
Sbjct: 379 IIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVY 438

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            +   + HY+ + D+LGRAG + EAYD I  M  + T S+W +LL+SC  ++NLELAE  
Sbjct: 439 GLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKV 498

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK----- 482
           A+++F ++ +N G ++L+ N+YA+N RW+E+A+ R  +R   ++K+ + SW+E+K     
Sbjct: 499 AEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHG 558

Query: 483 ---GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
              G R+HP +  I   L+ ++E+M+K GY  +T   LHDV++  K+ELL  HSE+LA+ 
Sbjct: 559 FVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVA 618

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FG++   PG  IR+ KN+RIC DCH  +KF S+I  RE IVRD +RFHHF  GSCSC D+
Sbjct: 619 FGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDY 678

Query: 600 W 600
           W
Sbjct: 679 W 679



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 3/261 (1%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + KQLH   ++     +    + ++ +Y    L+ +A  VF+++     + W S++  F 
Sbjct: 23  QAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFT 81

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
              L+  AL  F   +  G   +     SV+ +C  +  L  G+ VH  + + G   +++
Sbjct: 82  DQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L++MY+K   +     VF  +  K+VV +NT+I+G+++     + + +  +M  + 
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           L P+  T  SVL   S    V KGK     ++++  +  +V+  S ++D+  ++  I ++
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDS 260

Query: 393 YDLILNMPFDATASMWGSLLA 413
            + + +  +   +  W SL+A
Sbjct: 261 -ERVFSHLYRRDSISWNSLVA 280


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/574 (41%), Positives = 359/574 (62%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CAR      G   H  ++  G + D      L+  Y+KCG +  A KVFD++
Sbjct: 114 TFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDI 173

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P + +VSW  II  Y   G+ +EA+ +F  +L     P S FT+  VL AC    D+   
Sbjct: 174 PDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDS-FTIVRVLSACTQLGDLNSG 232

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H   ++  M RNVFVGT+L+D+YAKCG +  A  VF+ MPE++ V+W +M+ G+  N
Sbjct: 233 EWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALN 292

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L +EA+ LF + Q   ++ + +T+  V+ ACA L AL  G+ V  ++ +  F  N    
Sbjct: 293 GLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLG 352

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+D+YAKCG +  A+ VF G++EK+ V+WN +ISG + +        LF ++++ G+ 
Sbjct: 353 TALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIK 412

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T+I +L  C+H G+V++G+ YF+ M +  ++ P++ HY CM+D+LGRAGL+ EA+ 
Sbjct: 413 PDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQ 472

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI NMP +A A +WG+LL +CR +R+ +LAE+A KQL  +EP N+GN++LLSNIY+AN +
Sbjct: 473 LIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLK 532

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W+E A+ R  + +  ++K    SW+E+         G + HP   +IY+KL++L ++MK 
Sbjct: 533 WDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKV 592

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P T+  L D+E+  K+  L  HSEKLA+ FGL+   P   IR++KNLR+CGDCH  
Sbjct: 593 AGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMA 652

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S I GRE  VRD NRFH F  GSCSC D+W
Sbjct: 653 IKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 202/373 (54%), Gaps = 9/373 (2%)

Query: 71  SNILINFYSKCGL----ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
            N L+N   +C       +  R +F ++ Q  I  WNT+I    +N    +A+  +  M 
Sbjct: 45  DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR 104

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            EG  P + FT   VL ACA   D+    ++H   +K   D +VFV T+L+ +YAKCG +
Sbjct: 105 SEGFLP-NNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYL 163

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            DA +VF+ +P++N V+W+++++G++    + EA+ +FRR   + L  + FTI  V+ AC
Sbjct: 164 EDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSAC 223

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
             L  L  G+ +H  + + G   N+F  +SLVDMYAKCG +  A  VF G+ EK++V W 
Sbjct: 224 TQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWG 283

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MI G++ +    E + LF +MQ+  + P+  T + VLSAC+ +G +E G+ +   +V +
Sbjct: 284 AMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE-WVSGLVDR 342

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELA 424
           +  L N    + +ID+  + G +  A+++   M  +    +W ++++  +   Y  +   
Sbjct: 343 NEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKISFG 401

Query: 425 EIAAKQLFGMEPD 437
                +  G++PD
Sbjct: 402 LFGQVEKLGIKPD 414



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 161/320 (50%), Gaps = 16/320 (5%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T+   L +C +      G+  H  I+ MG+  +      L++ Y+KCG +  AR 
Sbjct: 210 APDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARS 269

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD MP++ IVSW  +I  Y  NG  +EA+ LF+ M RE   P   +TV  VL AC A+ 
Sbjct: 270 VFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKP-DCYTVVGVLSAC-ARL 327

Query: 150 DVFECKQLHVFALKAAMDRNVF-----VGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
              E  +     +   +DRN F     +GTAL+D+YAKCG +S A  VF+ M E++ V W
Sbjct: 328 GALELGEW----VSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVW 383

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +++++G   N   + +  LF + + LG++ +  T   ++C C     + +G++    + +
Sbjct: 384 NAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYR 443

Query: 265 -TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVM 322
                 ++     +VD+  + G + +A+ +   +  E N ++W  ++ G  R  R  ++ 
Sbjct: 444 FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALL-GACRIHRDTQLA 502

Query: 323 ILFEKMQQAGLHP-NEQTYI 341
            L  K Q   L P N   Y+
Sbjct: 503 ELALK-QLIELEPWNSGNYV 521


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/574 (39%), Positives = 367/574 (63%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+   A  RG+     II  G  +D      L++ Y+KCG +  A +VF+++
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +V+WN +I +Y  + +   A+A F  +L+EG  P S  T +S+L  C +   +   
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSS-TFTSILNVCKSSDSLELG 533

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +KA ++ ++ V  AL+ ++  CG +  A  +F  MP+R+ V+W++++AGFVQ+
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQH 593

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              + A   F+  Q  G++ ++ T + ++ ACA   AL +G+++HA++ +  F  ++   
Sbjct: 594 GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVG 653

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+ MY KCG + DA+ VF  + +KNV  W +MI+G+++H R  E + LF +MQQ G+ 
Sbjct: 654 TGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVK 713

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++  LSAC+H G++E+G  +F  M K+ N+ P + HY CM+D+ GRAGL++EA +
Sbjct: 714 PDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVE 772

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I+ M  +  + +WG+LL +C+ + N+ELAE AA++   ++P++ G  ++LSNIYAA   
Sbjct: 773 FIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGM 832

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+EVA+ RK++ D  V K+  +SW+E+ GK        + HP+  EI+++LE+L  EM++
Sbjct: 833 WKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQ 892

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P+T + LHDVED+ K++ L +HSE+LA+T+GL+   P  PI I KNLR+CGDCH+ 
Sbjct: 893 LGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTA 952

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S+I  R+ I RD NRFHHF +G CSC DFW
Sbjct: 953 TKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/428 (32%), Positives = 234/428 (54%), Gaps = 42/428 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A LQ C + +    G+  +  I   G+  D    N LIN Y+KCG    A+++FD+M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ + SWN ++G Y  +G  +EA  L   M+++   P  + T  S+L ACA  R+V + 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKP-DKRTFVSMLNACADARNVDKG 230

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           ++L+   LKA  D ++FVGTAL++++ KCG I DA++VF+++P R+ VTW+SM+ G  ++
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +++A  LF+R +  G++ ++    S++ AC    AL QGK+VHA + + G+ + ++  
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++++ MY KCG + DA  VF  ++ +NVV W  MI+GF++H R  E  + F KM ++G+ 
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK-------------------------QHNV 369
           PN  T++S+L ACS    +++G+   D +++                          H V
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470

Query: 370 LP-----NVFHYSCMIDILGRAGLIHEAYD-------LILNMPFDATASMWGSLLASCRN 417
                  NV  ++ MI     A + HE YD        +L       +S + S+L  C++
Sbjct: 471 FEKISKQNVVAWNAMI----TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 418 YRNLELAE 425
             +LEL +
Sbjct: 527 SDSLELGK 534



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/406 (32%), Positives = 219/406 (53%), Gaps = 7/406 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +CA  R   +G+  +  I+  G + D      LIN + KCG I  A KVFD +
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+W ++I     +GR ++A  LF  M  EG  P  +    S+L AC     + + 
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP-DKVAFVSLLRACNHPEALEQG 331

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H    +   D  ++VGTA+L +Y KCG + DA  VF+ +  RN V+W++M+AGF Q+
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EA + F +    G+E N+ T  S++ AC+  +AL +G+Q+   + + G+GS+    
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MYAKCG + DA+ VF  I ++NVV WN MI+ + +H +    +  F+ + + G+ 
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEAY 393
           PN  T+ S+L+ C     +E GK    L++K    L +  H S  ++ +    G +  A 
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG--LESDLHVSNALVSMFVNCGDLMSAK 569

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK--QLFGMEPD 437
           +L  +MP     S W +++A    +   ++A    K  Q  G++PD
Sbjct: 570 NLFNDMPKRDLVS-WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 221/400 (55%), Gaps = 5/400 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++C    A  +GK  HA++  +G + +      +++ Y+KCG +  A +VFD +  R +
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  +I  +  +GR  EA   F  M+  G  P +  T  S+L AC++   +   +Q+  
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP-NRVTFMSILGACSSPSALKRGQQIQD 437

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             ++A    +  V TALL +YAKCG + DA RVFE + ++N V W++M+  +VQ+E Y+ 
Sbjct: 438 HIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL  F+     G++ N  T +S++  C    +L  GK VH ++ K G  S++  +++LV 
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVS 557

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           M+  CG ++ A  +F+ + ++++V WNT+I+GF +H ++      F+ MQ++G+ P++ T
Sbjct: 558 MFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +  +L+AC+    + +G+    L + +     +V   + +I +  + G I +A+ +   +
Sbjct: 618 FTGLLNACASPEALTEGRRLHAL-ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL 676

Query: 400 PFDATASMWGSLLAS-CRNYRNLELAEIAAK-QLFGMEPD 437
           P     S W S++A   ++ R  E  E+  + Q  G++PD
Sbjct: 677 PKKNVYS-WTSMIAGYAQHGRGKEALELFYQMQQEGVKPD 715



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 161/315 (51%), Gaps = 8/315 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + L  C    +   GK  H  I+  GL +D   SN L++ +  CG +  A+ +F++
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R +VSWNTII  +  +G+ Q A   F  M   G  P  + T + +L ACA+   + E
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP-DKITFTGLLNACASPEALTE 633

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            ++LH    +AA D +V VGT L+ +Y KCG I DA +VF  +P++N  +W+SM+AG+ Q
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQ 693

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   +EAL LF + Q  G++ +  T    + ACA    + +G      + +      M  
Sbjct: 694 HGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEH 753

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              +VD++ + G + +A  F+     E +  +W  ++     H  +VE   L EK  Q  
Sbjct: 754 YGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL-NVE---LAEKAAQKK 809

Query: 333 LH--PNEQTYISVLS 345
           L   PN+     +LS
Sbjct: 810 LELDPNDNGVFVILS 824



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 110/198 (55%), Gaps = 2/198 (1%)

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           + EA+ +  R     ++  + T S+++  C     L  G++++  + K+G   ++F  ++
Sbjct: 91  FNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNT 150

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L++MYAKCG  + A  +F  + EK+V  WN ++ G+ +H    E   L E+M Q  + P+
Sbjct: 151 LINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPD 210

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           ++T++S+L+AC+    V+KG+  ++L++K      ++F  + +I++  + G I +A  + 
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTALINMHIKCGDIGDATKVF 269

Query: 397 LNMPFDATASMWGSLLAS 414
            N+P     + W S++  
Sbjct: 270 DNLPTRDLVT-WTSMITG 286


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/574 (39%), Positives = 367/574 (63%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+   A  RG+     II  G  +D      L++ Y+KCG +  A +VF+++
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +V+WN +I +Y  + +   A+A F  +L+EG  P S  T +S+L  C +   +   
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSS-TFTSILNVCKSSDSLELG 533

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +KA ++ ++ V  AL+ ++  CG +  A  +F  MP+R+ V+W++++AGFVQ+
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQH 593

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              + A   F+  Q  G++ ++ T + ++ ACA   AL +G+++HA++ +  F  ++   
Sbjct: 594 GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVG 653

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+ MY KCG + DA+ VF  + +KNV  W +MI+G+++H R  E + LF +MQQ G+ 
Sbjct: 654 TGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVK 713

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++  LSAC+H G++E+G  +F  M K+ N+ P + HY CM+D+ GRAGL++EA +
Sbjct: 714 PDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVE 772

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I+ M  +  + +WG+LL +C+ + N+ELAE AA++   ++P++ G  ++LSNIYAA   
Sbjct: 773 FIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGM 832

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+EVA+ RK++ D  V K+  +SW+E+ GK        + HP+  EI+++LE+L  EM++
Sbjct: 833 WKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQ 892

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P+T + LHDVED+ K++ L +HSE+LA+T+GL+   P  PI I KNLR+CGDCH+ 
Sbjct: 893 LGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTA 952

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S+I  R+ I RD NRFHHF +G CSC DFW
Sbjct: 953 TKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/428 (32%), Positives = 234/428 (54%), Gaps = 42/428 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A LQ C + +    G+  +  I   G+  D    N LIN Y+KCG    A+++FD+M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ + SWN ++G Y  +G  +EA  L   M+++   P  + T  S+L ACA  R+V + 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKP-DKRTFVSMLNACADARNVDKG 230

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           ++L+   LKA  D ++FVGTAL++++ KCG I DA++VF+++P R+ VTW+SM+ G  ++
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +++A  LF+R +  G++ ++    S++ AC    AL QGK+VHA + + G+ + ++  
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG 350

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++++ MY KCG + DA  VF  ++ +NVV W  MI+GF++H R  E  + F KM ++G+ 
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK-------------------------QHNV 369
           PN  T++S+L ACS    +++G+   D +++                          H V
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470

Query: 370 LP-----NVFHYSCMIDILGRAGLIHEAYD-------LILNMPFDATASMWGSLLASCRN 417
                  NV  ++ MI     A + HE YD        +L       +S + S+L  C++
Sbjct: 471 FEKISKQNVVAWNAMI----TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKS 526

Query: 418 YRNLELAE 425
             +LEL +
Sbjct: 527 SDSLELGK 534



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/406 (32%), Positives = 219/406 (53%), Gaps = 7/406 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +CA  R   +G+  +  I+  G + D      LIN + KCG I  A KVFD +
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+W ++I     +GR ++A  LF  M  EG  P  +    S+L AC     + + 
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP-DKVAFVSLLRACNHPEALEQG 331

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H    +   D  ++VGTA+L +Y KCG + DA  VF+ +  RN V+W++M+AGF Q+
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EA + F +    G+E N+ T  S++ AC+  +AL +G+Q+   + + G+GS+    
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MYAKCG + DA+ VF  I ++NVV WN MI+ + +H +    +  F+ + + G+ 
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEAY 393
           PN  T+ S+L+ C     +E GK    L++K    L +  H S  ++ +    G +  A 
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG--LESDLHVSNALVSMFVNCGDLMSAK 569

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK--QLFGMEPD 437
           +L  +MP     S W +++A    +   ++A    K  Q  G++PD
Sbjct: 570 NLFNDMPKRDLVS-WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 220/400 (55%), Gaps = 5/400 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++C    A  +GK  HA++  +G + +      +++ Y+KCG +  A +VFD +  R +
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  +I  +  +GR  EA   F  M+  G  P +  T  S+L AC++   +   +Q+  
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP-NRVTFMSILGACSSPSALKRGQQIQD 437

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             ++A    +  V TALL +YAKCG + DA RVFE + ++N V W++M+  +VQ+E Y+ 
Sbjct: 438 HIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL  F+     G++ N  T +S++  C    +L  GK VH ++ K G  S++  +++LV 
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVS 557

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           M+  CG ++ A  +F+ + ++++V WNT+I+GF +H ++      F+ MQ++G+ P++ T
Sbjct: 558 MFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +  +L+AC+    + +G+    L + +     +V   + +I +  + G I +A+ +   +
Sbjct: 618 FTGLLNACASPEALTEGRRLHAL-ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL 676

Query: 400 PFDATASMWGSLLAS-CRNYRNLELAEIAAK-QLFGMEPD 437
           P     S W S++    ++ R  E  E+  + Q  G++PD
Sbjct: 677 PKKNVYS-WTSMITGYAQHGRGKEALELFYQMQQEGVKPD 715



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 160/315 (50%), Gaps = 8/315 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + L  C    +   GK  H  I+  GL +D   SN L++ +  CG +  A+ +F++
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R +VSWNTII  +  +G+ Q A   F  M   G  P  + T + +L ACA+   + E
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP-DKITFTGLLNACASPEALTE 633

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            ++LH    +AA D +V VGT L+ +Y KCG I DA +VF  +P++N  +W+SM+ G+ Q
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQ 693

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   +EAL LF + Q  G++ +  T    + ACA    + +G      + +      M  
Sbjct: 694 HGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEH 753

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              +VD++ + G + +A  F+     E +  +W  ++     H  +VE   L EK  Q  
Sbjct: 754 YGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL-NVE---LAEKAAQKK 809

Query: 333 LH--PNEQTYISVLS 345
           L   PN+     +LS
Sbjct: 810 LELDPNDNGVFVILS 824



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 110/198 (55%), Gaps = 2/198 (1%)

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           + EA+ +  R     ++  + T S+++  C     L  G++++  + K+G   ++F  ++
Sbjct: 91  FNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNT 150

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L++MYAKCG  + A  +F  + EK+V  WN ++ G+ +H    E   L E+M Q  + P+
Sbjct: 151 LINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPD 210

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           ++T++S+L+AC+    V+KG+  ++L++K      ++F  + +I++  + G I +A  + 
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTALINMHIKCGDIGDATKVF 269

Query: 397 LNMPFDATASMWGSLLAS 414
            N+P     + W S++  
Sbjct: 270 DNLPTRDLVT-WTSMITG 286


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/580 (40%), Positives = 358/580 (61%), Gaps = 11/580 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T        L  C R+RA   G+  HA +I             LI FY KC  +  AR V
Sbjct: 56  TNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHV 115

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD MP+R +VSW  +I +Y+  G   +A++LF+ MLR G  P +EFT ++VL +C     
Sbjct: 116 FDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEP-NEFTFATVLTSCIGSSG 174

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
               +Q+H   +K   + +V+VG++LLD+YAK G I +A  +F+ +PER+ V+ +++++G
Sbjct: 175 FVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISG 234

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q  L EEAL LFRR Q  G++ N  T +SV+ A +GLAAL  GKQVH  L ++   S 
Sbjct: 235 YAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSY 294

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-Q 329
           +   +SL+DMY+KCG +  A  +F  + E+ V+ WN M+ G+S+H    EV+ LF  M  
Sbjct: 295 VVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMID 354

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKS-YFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           +  + P+  T ++VLS CSH G+ +KG   ++D+   + +V P+  HY C++D+LGRAG 
Sbjct: 355 ENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGR 414

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           +  A++ +  MPF+ +A++WG LL +C  + NL++ E    QL  +EP+NAGN+++LSN+
Sbjct: 415 VEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNL 474

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKL 500
           YA+  RWE+V   R L+    V KE  +SW+E+            +HPR  E+ +K+++L
Sbjct: 475 YASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQEL 534

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
               K+ GY P+    LHDV++ +K+++L+ HSEKLALTFGL+     VPIR++KNLRIC
Sbjct: 535 SARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRIC 594

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH+F K+ S+I GRE  +RD NRFH    G CSC D+W
Sbjct: 595 VDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL+ N    ++V+  C    A+ +G++VHA + KT +   ++  + L+  Y KC  + DA
Sbjct: 53  GLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDA 112

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  + E+NVV W  MIS +S+   + + + LF +M ++G  PNE T+ +VL++C   
Sbjct: 113 RHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGS 172

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
                G+     ++K  N   +V+  S ++D+  + G IHEA  +   +P
Sbjct: 173 SGFVLGRQIHSHIIKL-NYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP 221


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/562 (41%), Positives = 365/562 (64%), Gaps = 10/562 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C   +  ++G++ HA I+     +D +  N L+N Y+KCG +  ARKVF++MPQR  
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W T+I  Y+ + R  +A+  F  MLR G +P +EFT+SSV+ A AA+R      QLH 
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSP-NEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F +K   D NV VG+ALLD+Y + GL+ DA  VF+++  RN+V+W++++AG  +    E+
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF+     G   + F+ +S+  AC+    L QGK VHA + K+G     FA ++L+D
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAK G + DA  +F  + +++VV WN++++ +++H    E +  FE+M++ G+ PNE +
Sbjct: 306 MYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEIS 365

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++SVL+ACSH G++++G  Y++LM K+  ++P  +HY  ++D+LGRAG ++ A   I  M
Sbjct: 366 FLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEM 424

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA++W +LL +CR ++N EL   AA+ +F ++PD+ G H++L NIYA+  RW + A
Sbjct: 425 PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAA 484

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R RK +++S VKKE + SWVEI+            HP+  EI  K E+++ ++K+LGY P
Sbjct: 485 RVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVP 544

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T H +  V+   ++  L +HSEK+AL F L+   PG  I I KN+R+CGDCH+ +K AS
Sbjct: 545 DTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLAS 604

Query: 572 RIAGRETIVRDLNRFHHFTNGS 593
           ++ GRE IVRD NRFHHF + S
Sbjct: 605 KVVGREIIVRDTNRFHHFKDAS 626



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 2/291 (0%)

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           N L     P      +++L  C   + + + + +H   L++    ++ +G  LL++YAKC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + +A +VFE MP+R+ VTW+++++G+ Q++   +AL+ F +    G   N+FT+SSVI
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            A A       G Q+H    K GF SN+   S+L+D+Y + G + DA  VF  +E +N V
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN +I+G +R + + + + LF+ M + G  P+  +Y S+  ACS  G +E+GK     M
Sbjct: 229 SWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYM 288

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +K    L   F  + ++D+  ++G IH+A  +   +      S W SLL +
Sbjct: 289 IKSGEKLV-AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTA 337



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 147/282 (52%), Gaps = 2/282 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + +++ A ER    G   H   +  G +++    + L++ Y++ GL+  A+ VFD +
Sbjct: 163 TLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL 222

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSWN +I  +      ++A+ LF  MLR+G  P S F+ +S+  AC++   + + 
Sbjct: 223 ESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRP-SHFSYASLFGACSSTGFLEQG 281

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H + +K+      F G  LLD+YAK G I DA ++F+ + +R+ V+W+S++  + Q+
Sbjct: 282 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EA+  F   + +G+  N+ +  SV+ AC+    L +G   + ++ K G     +  
Sbjct: 342 GFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHY 401

Query: 275 SSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
            ++VD+  + G +  A  F+     E    +W  +++    H
Sbjct: 402 VTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/574 (41%), Positives = 361/574 (62%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++CA   A   G+  H  ++    ++D   +  L++ Y+K GL+  A+KVFD +
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           PQR +V WN +I   +   +  EA++LF  M +EG    +  T+++VL + A+   + + 
Sbjct: 365 PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG-FDVNRTTLAAVLKSTASLEAISDT 423

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A K     +  V   L+D Y KC  ++ A RVFE     + + ++SM+    Q 
Sbjct: 424 RQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQC 483

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  E+A+ LF      GL+ + F +SS++ ACA L+A  QGKQVHA L K  F S++FA 
Sbjct: 484 DHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAG 543

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV  YAKCG + DA   FSG+ EK VV W+ MI G ++H      + +F +M    + 
Sbjct: 544 NALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHIS 603

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T  SVL AC+H G+V++ K YF+ M +   +     HY+CMID+LGRAG + +A +
Sbjct: 604 PNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAME 663

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+ +MPF   A++WG+LLA+ R +R+ EL  +AA++LF +EP+ +G H+LL+N YA+   
Sbjct: 664 LVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGM 723

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++VA+ RKL++DS+VKKE + SWVE+K        G ++HPR  +IY+KL++L + M K
Sbjct: 724 WDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTK 783

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P  E DLHDV+ + K+ LL HHSE+LA+ F L+    G PIR+ KNLRIC DCH+ 
Sbjct: 784 AGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAA 843

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S I  RE I+RD+NRFHHF +G+CSC D+W
Sbjct: 844 FKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 203/375 (54%), Gaps = 3/375 (0%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + +C   R    G+  HA +I  G + D  T+N L++ YSK G I  A  VF ++P+  
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETD 267

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +VSWN  I     +G +Q A+ L + M   G  P + FT+SS+L ACA        +Q+H
Sbjct: 268 VVSWNAFISGCVLHGHDQHALELLLQMKSSGLVP-NVFTLSSILKACAGSGAFNLGRQIH 326

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F +KA  D + ++   L+D+YAK GL+ DA +VF+ +P+R+ V W+++++G      + 
Sbjct: 327 GFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHA 386

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL LF R +  G + N+ T+++V+ + A L A+   +QVHA+  K GF S+    + L+
Sbjct: 387 EALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLI 446

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           D Y KC C+  AY VF      +++ + +MI+  S+     + + LF +M + GL P+  
Sbjct: 447 DSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPF 506

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
              S+L+AC+ +   E+GK     ++K+   + +VF  + ++    + G I +A      
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKR-QFMSDVFAGNALVYTYAKCGSIEDADLAFSG 565

Query: 399 MPFDATASMWGSLLA 413
           +P     S W +++ 
Sbjct: 566 LPEKGVVS-WSAMIG 579



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 207/384 (53%), Gaps = 9/384 (2%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L T+   L   A  ++ ++G   HA ++  GL    +  N L++FYSKC L   AR+VFD
Sbjct: 4   LETIGPLLTRYAATQSLLQGAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFD 61

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           E+P  C VSW++++ +Y+ N   ++A+  F +M R      +EF +  VL  CA   D  
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSM-RSCSVRCNEFVLPVVL-KCAP--DAG 117

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF-ESMPERNEVTWSSMVAGF 211
              QLH  A+   +  ++FV  AL+ +Y   G + +A  VF E+  ERN V+W+ +++ +
Sbjct: 118 FGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V+N+    A+ +F      G++ N+F  S V+ AC G   L  G++VHA++ +TG+  ++
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F A++LVDMY+K G +  A  VF  + E +VV WN  ISG   H      + L  +M+ +
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL PN  T  S+L AC+  G    G+     MVK +    N   +  ++D+  + GL+ +
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDD 356

Query: 392 AYDLILNMPFDATASMWGSLLASC 415
           A  +   +P      +W +L++ C
Sbjct: 357 AKKVFDWIP-QRDLVLWNALISGC 379



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 168/300 (56%), Gaps = 2/300 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP-QRCIVSWNTIIGSYT 110
           G   HA  +  GL  D   +N L+  Y   G +  AR VFDE   +R  VSWN ++ +Y 
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N R   AV +F  M+  G  P +EF  S V+ AC   RD+   +++H   ++   D++V
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQP-NEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F   AL+D+Y+K G I  A+ VF  +PE + V+W++ ++G V +   + AL L  + +  
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  N FT+SS++ ACAG  A   G+Q+H  + K    S+ + A  LVDMYAK G + DA
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDA 357

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  I ++++VLWN +ISG S  A+  E + LF +M++ G   N  T  +VL + + +
Sbjct: 358 KKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASL 417



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 151/291 (51%), Gaps = 6/291 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L+S A   A    +  HA    +G  +D+   N LI+ Y KC  ++ A +VF++
Sbjct: 405 TTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEK 464

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                I+++ ++I + +     ++A+ LF+ MLR+G  P   F +SS+L ACA+     +
Sbjct: 465 HGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDP-DPFVLSSLLNACASLSAYEQ 523

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     +VF G AL+  YAKCG I DA   F  +PE+  V+WS+M+ G  Q
Sbjct: 524 GKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQ 583

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   + AL +F R     +  N  T++SV+CAC   A L+   + +    K  FG     
Sbjct: 584 HGHGKRALDVFHRMVDEHISPNHITMTSVLCAC-NHAGLVDEAKRYFNSMKEMFGIERTE 642

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
              + ++D+  + G + DA  + + +  + N  +W  +++  SR  R  E+
Sbjct: 643 EHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAA-SRVHRDPEL 692


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/619 (38%), Positives = 375/619 (60%), Gaps = 43/619 (6%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           +  A+ N N    ST+   L  C++ R    G+  + +I+  G  +D    + L++ Y+K
Sbjct: 129 LKDAAMNLNRITFSTM---LILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTK 185

Query: 81  CGLISGARKVFDEMPQRCIV-------------------------------SWNTIIGSY 109
            GLI  A++ FDEMP+R +V                               SW  +I   
Sbjct: 186 LGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGL 245

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             NG E+EA+ +F  M R       +FT  SVL AC +   + E KQ+H + ++     N
Sbjct: 246 MQNGLEREALDMFREM-RLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           VFVG+AL+D+Y+KC  I  A  VF+ MP++N ++W++M+ G+ QN   EEA+ +F   Q 
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G+E + FT+ SVI +CA LA+L +G Q H     +G  S +  +++L+ +Y KCG   +
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTEN 424

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           ++ +F+ +  ++ V W  +++G+++  ++ E + LFE+M   GL P+  T+I VLSACS 
Sbjct: 425 SHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSR 484

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+VEKG  YF+ M+K+H ++P V H +C+ID+LGRAG + EA + I NMP       W 
Sbjct: 485 AGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWA 544

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL+SCR + ++E+ + AA  L  +EP N  +++LLS++YA+  +W++VA+ R+ +RD  
Sbjct: 545 TLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKR 604

Query: 470 VKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           V+KE   SW++ KGK        ++ P + +IY++LEKL  +M + GY P+    LHDVE
Sbjct: 605 VRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVE 664

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +S K ++L HHSEKLA+ FGL+ + PG+PIR++KNLR+CGDCH+  KF S+I  RE +VR
Sbjct: 665 ESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVR 724

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D  RFH F +G+CSC DFW
Sbjct: 725 DAVRFHLFKDGTCSCGDFW 743



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 206/399 (51%), Gaps = 35/399 (8%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N +++ YSK GL+S  +++F+ MP R  VSWN  I  Y   G   +AV ++  ML++   
Sbjct: 75  NTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAM 134

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             +  T S++L  C+  R V   +Q++   LK     +VFVG+ L+D+Y K GLI DA R
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKR 194

Query: 192 VFESMPERN-------------------------------EVTWSSMVAGFVQNELYEEA 220
            F+ MPERN                                ++W+ M+ G +QN L  EA
Sbjct: 195 YFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREA 254

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           L +FR  ++ G   +QFT  SV+ AC  L AL +GKQ+HA + +T    N+F  S+LVDM
Sbjct: 255 LDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDM 314

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y+KC  +  A  VF  + +KNV+ W  M+ G+ ++  S E + +F +MQ+ G+ P++ T 
Sbjct: 315 YSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTL 374

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            SV+S+C+++  +E+G + F        ++  +   + +I + G+ G    ++ L   M 
Sbjct: 375 GSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMN 433

Query: 401 FDATASMWGSLLASCRNY--RNLELAEIAAKQLFGMEPD 437
                S W +LLA    +   N  +         G++PD
Sbjct: 434 IRDEVS-WTALLAGYAQFGKANETIGLFERMLAHGLKPD 471



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 42/307 (13%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR-RA 227
           N+F    +L VY+K GL+S   ++F  MP R+ V+W+  ++G+       +A+ +++   
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +   +  N+ T S+++  C+    +  G+Q++  + K GFGS++F  S LVDMY K G +
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI 189

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGF-----------------SRHARSVEVMI------- 323
            DA   F  + E+NVV+ NTMI+G                   R + S  +MI       
Sbjct: 190 YDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNG 249

Query: 324 -------LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
                  +F +M+ AG   ++ T+ SVL+AC  +  + +GK     +++  +   NVF  
Sbjct: 250 LEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHK-DNVFVG 308

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF---- 432
           S ++D+  +   I  A  +   MP     S W ++L     Y     +E A K  F    
Sbjct: 309 SALVDMYSKCRSIKSAETVFKRMPQKNVIS-WTAMLV---GYGQNGFSEEAVKIFFEMQR 364

Query: 433 -GMEPDN 438
            G+EPD+
Sbjct: 365 NGVEPDD 371


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 373/612 (60%), Gaps = 38/612 (6%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK----- 80
           A+    + +   + L+SC   +    G+  H  II +G+  D  T N L+N YSK     
Sbjct: 99  ASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLE 158

Query: 81  ------------------------CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
                                      +   RKVF+ MP+R IVSWNT+I     NG  +
Sbjct: 159 EVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHE 218

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           +A+ +   M      P S FT+SSVL   A   ++ + K++H +A++   D +VF+G++L
Sbjct: 219 DALMMVREMGNADLRPDS-FTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSL 277

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +D+YAKC  + D+ RVF  +P+ + ++W+S++AG VQN +++E L  F++  +  ++ N 
Sbjct: 278 IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNH 337

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            + SS++ ACA L  L  GKQ+H  + ++ F  N+F AS+LVDMYAKCG +  A ++F  
Sbjct: 338 VSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDK 397

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           +E  ++V W  MI G++ H  + + + LF++M+  G+ PN   +++VL+ACSH G+V++ 
Sbjct: 398 MELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEA 457

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
             YF+ M + + ++P + HY+ + D+LGR G + EAY+ I +M  + T S+W +LLA+CR
Sbjct: 458 WKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACR 517

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
            ++N+ELAE  +K+LF ++P N G ++LLSNIY+A  RW++  + R  +RD  +KK+ + 
Sbjct: 518 VHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPAC 577

Query: 477 SWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
           SW+EIK        G ++HP    I   L+ L+E+M++ GY  +T   LHDVE+ +K+ L
Sbjct: 578 SWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYL 637

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHH 588
           L  HSE+LA+TFG++    G  IR+ KNLR+C DCH+  KF S+I GRE +VRD +RFHH
Sbjct: 638 LCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHH 697

Query: 589 FTNGSCSCWDFW 600
           F +G CSC DFW
Sbjct: 698 FKDGKCSCGDFW 709



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 201/386 (52%), Gaps = 33/386 (8%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           +  LQ+ +  ++  + K  HA+I+   L + +L S IL + YS   L+  +  +F+ +P 
Sbjct: 9   KTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTIL-SIYSNLNLLHDSLLIFNSLPS 67

Query: 97  R-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
               ++W +II  YT++G    +++ FI ML  GK P       SVL +C   +D+   +
Sbjct: 68  PPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYP-DHNVFPSVLKSCTLMKDLRFGE 126

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKC---------------GLISDA----------- 189
            +H   ++  M  +++   AL+++Y+K                G  SD            
Sbjct: 127 SVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYL 186

Query: 190 ---SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
               +VFE MP+R+ V+W+++++G  QN ++E+AL++ R      L  + FT+SSV+   
Sbjct: 187 GSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIF 246

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A    L++GK++H    + G+ +++F  SSL+DMYAKC  V D+  VF  + + + + WN
Sbjct: 247 AEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWN 306

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I+G  ++    E +  F++M  A + PN  ++ S++ AC+H+  +  GK     +++ 
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS 366

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEA 392
                NVF  S ++D+  + G I  A
Sbjct: 367 -RFDGNVFIASALVDMYAKCGNIRTA 391


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/572 (40%), Positives = 358/572 (62%), Gaps = 10/572 (1%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
            + + +CA+ +     +  H+ +    L  D    N LI+ Y KCG +S AR VFD +P 
Sbjct: 66  HSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPT 125

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           R +VSW  +I  Y  N    EA+ L  +MLR    P S FT +S L A  A       +Q
Sbjct: 126 RDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRP-SGFTFTSFLKAAGACGGRGIGEQ 184

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H  A+K  +D +V+VG+ALLD+YA+C  +  A RVF+ +  +NEV+W++++AGF +   
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            E  L+ F   Q  G     FT SSV  A A + AL QG+ VHA + K+G     F A++
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           ++ MYAK G +VDA  VF  ++++++V WNTM++ F+++    E +  FE++++ G+  N
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + T++SVL+ACSH G+V++GK YFD+M K +NV P + HY   +D+LGRAGL+ EA   +
Sbjct: 365 QITFLSVLTACSHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDLLGRAGLLKEALIFV 423

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
             MP + TA++WG+LL +CR ++N ++ + AA  +F ++P++ G  +LL NIYA+  +W+
Sbjct: 424 FKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWD 483

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLG 508
           + AR RK+++ + VKKE + SWVEI+            HP+  EIY   E++   +KK G
Sbjct: 484 DAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAG 543

Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
           Y P T++ L  +++  ++  L +HSEK+AL F L+ +  G  IRIMKN+RICGDCHS  +
Sbjct: 544 YVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFR 603

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + S +  RE +VRD NRFHHF+NGSCSC D+W
Sbjct: 604 YVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/557 (41%), Positives = 344/557 (61%), Gaps = 9/557 (1%)

Query: 52   GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            G+  HA +   G   D    N L+  Y K G +    +VF+    R ++SWN ++  +  
Sbjct: 450  GESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHD 509

Query: 112  NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            N      + +F  ML EG  P + +T  S+L +C++  DV   KQ+H   +K ++D N F
Sbjct: 510  NETCDTGLRIFNQMLAEGFNP-NMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF 568

Query: 172  VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
            VGTAL+D+YAK   + DA  +F  + +R+   W+ +VAG+ Q+   E+A+  F + Q  G
Sbjct: 569  VGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG 628

Query: 232  LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            ++ N+FT++S +  C+ +A L  G+Q+H++  K G   +MF AS+LVDMYAKCGCV DA 
Sbjct: 629  VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 292  FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             VF G+  ++ V WNT+I G+S+H +  + +  FE M   G  P+E T+I VLSACSH+G
Sbjct: 689  VVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMG 748

Query: 352  MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            ++E+GK +F+ + K + + P + HY+CM+DILGRAG  HE    I  M   +   +W ++
Sbjct: 749  LIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETV 808

Query: 412  LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
            L +C+ + N+E  E AA +LF +EP+   N++LLSN++AA   W++V   R L+    VK
Sbjct: 809  LGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVK 868

Query: 472  KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
            KE   SWVE+ G+         +HP+I EI+ KL+ L +++  +GY P T+H LH+V D 
Sbjct: 869  KEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDR 928

Query: 524  RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
             KQELL +HSE+LAL F L+       IRI KNLRICGDCH FMK  S I  +E +VRD+
Sbjct: 929  EKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDI 988

Query: 584  NRFHHFTNGSCSCWDFW 600
            N FHHF NGSCSC +FW
Sbjct: 989  NCFHHFKNGSCSCQNFW 1005



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/326 (37%), Positives = 192/326 (58%), Gaps = 1/326 (0%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L      L++CA +     GK  H ++I  G+N D+   N L+N Y+KCG  + A KVF 
Sbjct: 128 LRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 187

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           E+P+R +VSW  +I  +   G    AV LF  M REG    +EFT ++ L AC+   D+ 
Sbjct: 188 EIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREG-VEANEFTYATALKACSMCLDLE 246

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             KQ+H  A+K     ++FVG+AL+D+YAKCG +  A RVF  MP++N V+W++++ GF 
Sbjct: 247 FGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q    E+ L LF R     + +++FT+S+V+  CA    L  G+ VH++  + G   + F
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF 366

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +  LVDMY+KCG   DA  VF  IE+ +VV W+ +I+   +  +S E   +F++M+ +G
Sbjct: 367 ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKS 358
           + PN+ T  S++SA + +G +  G+S
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGES 452



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 191/358 (53%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+ CA       G++ H+  I +G   D   S  L++ YSKCGL   A KVF  +
Sbjct: 332 TLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +VSW+ II      G+ +EA  +F  M   G  P ++FT++S++ A     D++  
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIP-NQFTLASLVSAATDLGDLYYG 450

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H    K   + +  V  AL+ +Y K G + D  RVFE+   R+ ++W+++++GF  N
Sbjct: 451 ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDN 510

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  +  L +F +    G   N +T  S++ +C+ L+ +  GKQVHA + K     N F  
Sbjct: 511 ETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG 570

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAK   + DA  +F+ + ++++  W  +++G+++  +  + +  F +MQ+ G+ 
Sbjct: 571 TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVK 630

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           PNE T  S LS CS I  ++ G+    + +K      ++F  S ++D+  + G + +A
Sbjct: 631 PNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQS-GDMFVASALVDMYAKCGCVEDA 687



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 219/431 (50%), Gaps = 7/431 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       GK  HA+ I +G  +D    + L++ Y+KCG +  A +VF  M
Sbjct: 231 TYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCM 290

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++  VSWN ++  +   G  ++ + LF  M    +  +S+FT+S+VL  CA   ++   
Sbjct: 291 PKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGS-EINFSKFTLSTVLKGCANSGNLRAG 349

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H  A++   + + F+   L+D+Y+KCGL  DA +VF  + + + V+WS+++    Q 
Sbjct: 350 QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQK 409

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA  +F+R +  G+  NQFT++S++ A   L  L  G+ +HA +CK GF  +    
Sbjct: 410 GQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVC 469

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV MY K G V D   VF     ++++ WN ++SGF  +      + +F +M   G +
Sbjct: 470 NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFN 529

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+IS+L +CS +  V+ GK     +VK +++  N F  + ++D+  +   + +A +
Sbjct: 530 PNMYTFISILRSCSSLSDVDLGKQVHAQIVK-NSLDGNDFVGTALVDMYAKNRFLEDA-E 587

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA-GNHLLLSNIYAANR 453
            I N         W  ++A    Y      E A K    M+ +    N   L++  +   
Sbjct: 588 TIFNRLIKRDLFAWTVIVAG---YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 644

Query: 454 RWEEVARARKL 464
           R   +   R+L
Sbjct: 645 RIATLDSGRQL 655



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 159/275 (57%), Gaps = 2/275 (0%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           S +L  CA+K D+ E K +H   +K+ ++ +  +  +L++VYAKCG  + A +VF  +PE
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           R+ V+W++++ GFV       A+ LF   +  G+E N+FT ++ + AC+    L  GKQV
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA   K G  S++F  S+LVD+YAKCG +V A  VF  + ++N V WN +++GF++   +
Sbjct: 252 HAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDA 311

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            +V+ LF +M  + ++ ++ T  +VL  C++ G +  G+    L ++    L + F   C
Sbjct: 312 EKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCEL-DEFISCC 370

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           ++D+  + GL  +A  + + +  D     W +++ 
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIIT 404



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 5/178 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL ++L  C+R      G+  H+  I  G + D   ++ L++ Y+KCG +  A  VFD +
Sbjct: 635 TLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 694

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSWNTII  Y+ +G+  +A+  F  ML EG  P  E T   VL AC+    + E 
Sbjct: 695 VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVP-DEVTFIGVLSACSHMGLIEEG 753

Query: 155 KQLHVFALKA--AMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           K+ H  +L     +   +     ++D+  + G   +     E M    N + W +++ 
Sbjct: 754 KK-HFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLG 810


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/597 (40%), Positives = 357/597 (59%), Gaps = 10/597 (1%)

Query: 12  YYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS 71
           + K+  S +   A +       S   + LQSC   +A   GK  HA++   G   DT+ +
Sbjct: 54  HLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIA 113

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
             L+N Y  C  +S AR +FD +P+  I  WN +I  Y  NG  + AV L+  M   G  
Sbjct: 114 TKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV 173

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P   FT   VL ACAA   +   +++H   ++   +++VFVG AL+D+YAKCG +  A  
Sbjct: 174 P-DNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSARE 232

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+ +  R+ V W+SM+A + QN   +  L L     + GL   + T+ + I A A  AA
Sbjct: 233 VFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAA 292

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L QG+++H +  +  F S+    ++LVDMYAKCG V  A  +F  +  K VV WN MI+G
Sbjct: 293 LPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITG 352

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           ++ H  + E + LFE+M +    P+  T++ VLSACSH G++E+G  +F+ M++ + + P
Sbjct: 353 YAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDP 411

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
            V HY+CM+D+LG +G + EAY+LI+ M     + +WG+LL SC+ + N+EL EIA ++L
Sbjct: 412 TVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERL 471

Query: 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------G 483
             +EPD+AGN+++LSNIYA   +WE VA+ RKL+ D  +KK  + SW+E+K        G
Sbjct: 472 IELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSG 531

Query: 484 KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM 543
             +HP   EIYS+LE++   MK+ GY P T    HDVED  K  ++  HSE+LA+ FGL+
Sbjct: 532 DTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLI 591

Query: 544 CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              PG  + I KNLRIC DCH  +KF S+I  RE  VRD+NR+HHF +G CSC D+W
Sbjct: 592 STPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 370/578 (64%), Gaps = 13/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           T  + L +C        GK  H+++I +GL  D      L++ Y+KC   G +  +RKVF
Sbjct: 58  TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 117

Query: 92  DEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           ++MP+  ++SW  II +Y  +G  ++EA+ LF  M+  G    + F+ SSVL AC    D
Sbjct: 118 EQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGNLSD 176

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            +  +Q++ +A+K  +     VG +L+ +YA+ G + DA + F+ + E+N V+++++V G
Sbjct: 177 PYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 236

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N   EEA +LF      G+  + FT +S++   A + A+ +G+Q+H  L K G+ SN
Sbjct: 237 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN 296

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+ MY++CG +  A+ VF+ +E++NV+ W +MI+GF++H  +   + +F KM +
Sbjct: 297 QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLE 356

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  PNE TY++VLSACSH+GM+ +G+ +F+ M K+H ++P + HY+CM+D+LGR+GL+ 
Sbjct: 357 TGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLV 416

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA + I +MP  A A +W +LL +CR + N EL   AA+ +   EPD+   ++LLSN++A
Sbjct: 417 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 476

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           +  +W++V + RK +++  + KE   SW+E++        G+ +HP+  +IY +L++L  
Sbjct: 477 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 536

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++K++GY P+T+  LHD+E+ +K++ L  HSEK+A+ FGL+      PIRI KNLR+CGD
Sbjct: 537 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 596

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K+ S   GRE +VRD NRFHH  NG CSC D+W
Sbjct: 597 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 181/330 (54%), Gaps = 7/330 (2%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A KVFD+MP+R +V+W  +I  +   G  ++A+ LF++M   G  P   FT SSVL AC 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP-DRFTYSSVLSACT 67

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC---GLISDASRVFESMPERNEVT 203
               +   KQLH   ++  +  +V VG +L+D+YAKC   G + D+ +VFE MPE N ++
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 204 WSSMVAGFVQN-ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W++++  + Q+ E  +EA+ LF +     +  N F+ SSV+ AC  L+    G+QV++  
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G  S     +SL+ MYA+ G + DA   F  + EKN+V +N ++ G++++ +S E  
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           +LF ++   G+  +  T+ S+LS  + IG + KG+     ++K      N    + +I +
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYKSNQCICNALISM 306

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             R G I  A+ +   M  D     W S++
Sbjct: 307 YSRCGNIEAAFQVFNEME-DRNVISWTSMI 335


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 370/578 (64%), Gaps = 13/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           T  + L +C        GK  H+++I +GL  D      L++ Y+KC   G +  +RKVF
Sbjct: 53  TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 112

Query: 92  DEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           ++MP+  ++SW  II +Y  +G  ++EA+ LF  M+  G    + F+ SSVL AC    D
Sbjct: 113 EQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGNLSD 171

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            +  +Q++ +A+K  +     VG +L+ +YA+ G + DA + F+ + E+N V+++++V G
Sbjct: 172 PYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 231

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N   EEA +LF      G+  + FT +S++   A + A+ +G+Q+H  L K G+ SN
Sbjct: 232 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN 291

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+ MY++CG +  A+ VF+ +E++NV+ W +MI+GF++H  +   + +F KM +
Sbjct: 292 QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLE 351

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  PNE TY++VLSACSH+GM+ +G+ +F+ M K+H ++P + HY+CM+D+LGR+GL+ 
Sbjct: 352 TGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLV 411

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA + I +MP  A A +W +LL +CR + N EL   AA+ +   EPD+   ++LLSN++A
Sbjct: 412 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 471

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           +  +W++V + RK +++  + KE   SW+E++        G+ +HP+  +IY +L++L  
Sbjct: 472 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 531

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++K++GY P+T+  LHD+E+ +K++ L  HSEK+A+ FGL+      PIRI KNLR+CGD
Sbjct: 532 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 591

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K+ S   GRE +VRD NRFHH  NG CSC D+W
Sbjct: 592 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 181/330 (54%), Gaps = 7/330 (2%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A KVFD+MP+R +V+W  +I  +   G  ++A+ LF++M   G  P   FT SSVL AC 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP-DRFTYSSVLSACT 62

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC---GLISDASRVFESMPERNEVT 203
               +   KQLH   ++  +  +V VG +L+D+YAKC   G + D+ +VFE MPE N ++
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 204 WSSMVAGFVQN-ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W++++  + Q+ E  +EA+ LF +     +  N F+ SSV+ AC  L+    G+QV++  
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G  S     +SL+ MYA+ G + DA   F  + EKN+V +N ++ G++++ +S E  
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           +LF ++   G+  +  T+ S+LS  + IG + KG+     ++K      N    + +I +
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYKSNQCICNALISM 301

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             R G I  A+ +   M  D     W S++
Sbjct: 302 YSRCGNIEAAFQVFNEME-DRNVISWTSMI 330


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/577 (42%), Positives = 366/577 (63%), Gaps = 16/577 (2%)

Query: 35  TLQAT-LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+ AT ++ CA  +     K  H ++I  G + D      L+  YSKC  I  A K+F  
Sbjct: 295 TIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCM 354

Query: 94  MPQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           M   + +VSW  II  Y  NGR   A+ LF  M REG  P + FT S++L A AA     
Sbjct: 355 MHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRP-NHFTYSTILTANAA----V 409

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              Q+H   +K   + +  VGTAL D Y+K G  ++A+++FE + E++ V WS+M++G+ 
Sbjct: 410 SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYA 469

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFGSNM 271
           Q    E A+ +F +    G+E N+FT SSV+ ACA   A + QGKQ H+   K+GF + +
Sbjct: 470 QMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNAL 529

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             +S+LV MYAK G +  A  VF    ++++V WN+MISG+++H    + + +FE+M+  
Sbjct: 530 CVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSK 589

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            L  +  T+I V+SAC+H G+V +G+ YFDLMVK ++++P + HYSCM+D+  RAG++ +
Sbjct: 590 NLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEK 649

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A DLI  MPF A A++W +LLA+CR + N++L E+AA++L  ++P ++  ++LLSNIYA 
Sbjct: 650 AMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYAT 709

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
              W+E A+ RKL+   +VKKE   SW+E+K        G  +HP+   IY KLE+L   
Sbjct: 710 AGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIR 769

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +K  GY P+T++ LHDVE+  K+ +L  HSE+LA+ FGL+   PG PI+I+KNLR+CGDC
Sbjct: 770 LKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDC 829

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+ +K  S+I GR+ +VRD NRFHHF  GSCSC D+W
Sbjct: 830 HTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 182/321 (56%), Gaps = 2/321 (0%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           + + T+ S+L   L+ C      + GK  H + I  G   D      L++ Y K   +  
Sbjct: 86  SGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVED 145

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
             +VFDEM  + +VSW +++  Y  NG  ++A+ LF  M  EG  P + FT ++VL   A
Sbjct: 146 GERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKP-NPFTFAAVLGGLA 204

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           A   V +  Q+H   +K+ +D  +FVG +++++Y+K  ++SDA  VF+SM  RN V+W+S
Sbjct: 205 ADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNS 264

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+AGFV N L  EA  LF R ++ G++  Q   ++VI  CA +  +   KQ+H  + K G
Sbjct: 265 MIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNG 324

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILF 325
              ++   ++L+  Y+KC  + DA+ +F  +   +NVV W  +ISG+ ++ R+   M LF
Sbjct: 325 SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLF 384

Query: 326 EKMQQAGLHPNEQTYISVLSA 346
            +M++ G+ PN  TY ++L+A
Sbjct: 385 CQMRREGVRPNHFTYSTILTA 405



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 166/289 (57%), Gaps = 11/289 (3%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           ++++FDE PQ+ +   N ++  ++ N + +EA+ LF+ + R G +P    ++S VL  C 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSG-SPTDGSSLSCVLKVCG 103

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              D    KQ+H   +K     +V VGT+L+D+Y K   + D  RVF+ M  +N V+W+S
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           ++AG+ QN L E+AL LF + Q+ G++ N FT ++V+   A   A+ +G QVH ++ K+G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             S +F  +S+V+MY+K   V DA  VF  +E +N V WN+MI+GF  +   +E   LF 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 327 KMQQAGLHPNEQTYISVLSACSHIG----------MVEKGKSYFDLMVK 365
           +M+  G+   +  + +V+  C++I            V K  S FDL +K
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 370/578 (64%), Gaps = 13/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           T  + L +C        GK  H+++I +GL  D      L++ Y+KC   G +  +RKVF
Sbjct: 251 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 310

Query: 92  DEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           ++MP+  ++SW  II +Y  +G  ++EA+ LF  M+  G    + F+ SSVL AC    D
Sbjct: 311 EQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI-SGHIRPNHFSFSSVLKACGNLSD 369

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            +  +Q++ +A+K  +     VG +L+ +YA+ G + DA + F+ + E+N V+++++V G
Sbjct: 370 PYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 429

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N   EEA +LF      G+  + FT +S++   A + A+ +G+Q+H  L K G+ SN
Sbjct: 430 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN 489

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+ MY++CG +  A+ VF+ +E++NV+ W +MI+GF++H  +   + +F KM +
Sbjct: 490 QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLE 549

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  PNE TY++VLSACSH+GM+ +G+ +F+ M K+H ++P + HY+CM+D+LGR+GL+ 
Sbjct: 550 TGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLV 609

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA + I +MP  A A +W +LL +CR + N EL   AA+ +   EPD+   ++LLSN++A
Sbjct: 610 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 669

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           +  +W++V + RK +++  + KE   SW+E++        G+ +HP+  +IY +L++L  
Sbjct: 670 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 729

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++K++GY P+T+  LHD+E+ +K++ L  HSEK+A+ FGL+      PIRI KNLR+CGD
Sbjct: 730 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 789

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K+ S   GRE +VRD NRFHH  NG CSC D+W
Sbjct: 790 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 199/368 (54%), Gaps = 9/368 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T    L+SC R R    GK+ H K++  GL  D++  N LI+ YSKCG    AR +F
Sbjct: 43  DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 102

Query: 92  DEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           + M  +R +VSW+ ++  +  N  E +A+  F++ML  G  P +E+  ++V+ AC+    
Sbjct: 103 EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP-NEYCFAAVIRACSNANY 161

Query: 151 VFECKQLHVFALKAA-MDRNVFVGTALLDVYAK-CGLISDASRVFESMPERNEVTWSSMV 208
            +  + ++ F +K   ++ +V VG  L+D++ K  G +  A +VF+ MPERN VTW+ M+
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
             F Q     +A+ LF   ++ G   ++FT SSV+ AC  L  L  GKQ+H+ + + G  
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 281

Query: 269 SNMFAASSLVDMYAKC---GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-SVEVMIL 324
            ++    SLVDMYAKC   G V D+  VF  + E NV+ W  +I+ + +      E + L
Sbjct: 282 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 341

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F KM    + PN  ++ SVL AC ++     G+  +   VK      N    S +I +  
Sbjct: 342 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS-LISMYA 400

Query: 385 RAGLIHEA 392
           R+G + +A
Sbjct: 401 RSGRMEDA 408



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 137/256 (53%), Gaps = 4/256 (1%)

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           GR   A +  ++++ +   P    T S +L +C   R+    K +H   +++ ++ +  V
Sbjct: 23  GRLHHAFST-LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 81

Query: 173 GTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
              L+ +Y+KCG    A  +FE M  +R+ V+WS+MV+ F  N +  +A+  F     LG
Sbjct: 82  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 141

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSNMFAASSLVDMYAK-CGCVVD 289
              N++  ++VI AC+       G+ ++  + KTG+  +++     L+DM+ K  G +  
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 201

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           AY VF  + E+N+V W  MI+ F++   + + + LF  M+ +G  P+  TY SVLSAC+ 
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261

Query: 350 IGMVEKGKSYFDLMVK 365
           +G++  GK     +++
Sbjct: 262 LGLLALGKQLHSRVIR 277


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/583 (40%), Positives = 355/583 (60%), Gaps = 16/583 (2%)

Query: 34   STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            S+   T++SC+     V G++ H +    G   D   S+ LI+ YSKCG +  AR +FDE
Sbjct: 1143 SSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDE 1202

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE-------GKTPYSEFTVSSVLCACA 146
            +P R +VSW ++I  Y  N +   A+ LF + L E          P     + SVL AC+
Sbjct: 1203 IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262

Query: 147  AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
                    + +H F +K   D ++ VG  L+D YAKCG    + +VF+ M E+++++W+S
Sbjct: 1263 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 1322

Query: 207  MVAGFVQNELYEEALILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
            M+A + Q+ L  EAL +F    + +G+ YN  T+S+V+ ACA   AL  GK +H  + K 
Sbjct: 1323 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382

Query: 266  GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
                N+   +S++DMY KCG V  A   F  ++EKNV  W  M++G+  H R+ E + +F
Sbjct: 1383 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF 1442

Query: 326  EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             KM +AG+ PN  T++SVL+ACSH G+VE+G  +F+ M  ++++ P + HY CM+D+ GR
Sbjct: 1443 YKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGR 1502

Query: 386  AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
            AG ++EAY+LI  M       +WGSLL +CR ++N++L EIAA++LF ++PDN G ++LL
Sbjct: 1503 AGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLL 1562

Query: 446  SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
            SN+YA   RW +V R R L+++ ++ K    S VE+KG+        + HP    IY  L
Sbjct: 1563 SNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYL 1622

Query: 498  EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
            EKL  E++K+GY P     LHDV++  K+ +L  HSEKLA+ FG+M   PG  I I+KNL
Sbjct: 1623 EKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNL 1682

Query: 558  RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            R+CGDCH+ +K  S++  R+ +VRD  RFHHF +G CSC D+W
Sbjct: 1683 RVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 196/369 (53%), Gaps = 32/369 (8%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HAKII  GL+ND L +  LI+ YS  G I+ A  +F ++   C  +WN II + T NG  
Sbjct: 47  HAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           ++A+ L+ NM+ +G     +FT   V+ AC     +   K +H   +K     +VFV   
Sbjct: 107 EQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 176 LLDVYAKCG--------------------------LIS-----DASRVFESMPERNEVTW 204
           L+D Y KCG                          LIS     +A R+F+ +P +N V+W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           ++M+ G+++N+  EEAL LF+R Q   +  N++T+ S+I AC  +  L  G+ +H    K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                 ++  ++L+DMY+KCG + DA  VF  +  K++  WN+MI+    H    E + L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M++  + P+  T+I VL AC HI  V++G +YF  M + + + P   HY CM ++  
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 385 RAGLIHEAY 393
           R+  + EA+
Sbjct: 406 RSNNLDEAF 414



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 168/335 (50%), Gaps = 4/335 (1%)

Query: 13   YKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
            +K F          N    +   + + L +C+R       +  H  ++  G +      N
Sbjct: 1231 FKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGN 1290

Query: 73   ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
             L++ Y+KCG    ++KVFD M ++  +SWN++I  Y  +G   EA+ +F  M+R     
Sbjct: 1291 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 1350

Query: 133  YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
            Y+  T+S+VL ACA    +   K +H   +K  ++ NV VGT+++D+Y KCG +  A + 
Sbjct: 1351 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 1410

Query: 193  FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
            F+ M E+N  +W++MVAG+  +   +EAL +F +    G++ N  T  SV+ AC+    +
Sbjct: 1411 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLV 1470

Query: 253  IQGKQ-VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMIS 310
             +G    +A+  K      +     +VD++ + GC+ +AY +   ++ K + V+W +++ 
Sbjct: 1471 EEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLG 1530

Query: 311  GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
                H       I  +K+ +  L P+   Y  +LS
Sbjct: 1531 ACRIHKNVDLGEIAAQKLFE--LDPDNCGYYVLLS 1563



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 32/257 (12%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------- 82
           A +  T    +++C    +   GKV H  +I  G + D    N LI+FY KCG       
Sbjct: 122 AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALK 181

Query: 83  ---------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
                          +ISG         AR++FDE+P + +VSW  +I  Y  N + +EA
Sbjct: 182 VFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEA 241

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           + LF  M  E   P +E+T+ S++ AC     +   + +H +A+K  ++  V++GTAL+D
Sbjct: 242 LELFKRMQAENIFP-NEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+KCG I DA  VFE+MP ++  TW+SM+     + L +EAL LF   + + ++ +  T
Sbjct: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360

Query: 239 ISSVICACAGLAALIQG 255
              V+CAC  +  + +G
Sbjct: 361 FIGVLCACVHIKNVKEG 377



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 33/291 (11%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +++ +  +  +   L+ +Y+  G I+ A  +F  +      TW+ ++     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L E+AL+L++     G+  ++FT   VI AC    ++  GK VH  L K GF  ++F  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT--------------------------- 307
           ++L+D Y KCG    A  VF  +  +NVV W T                           
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 308 ----MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
               MI+G+ R+ +  E + LF++MQ   + PNE T +S++ AC+ +G++  G+   D  
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +K + +   V+  + +ID+  + G I +A ++   MP  +  + W S++ S
Sbjct: 284 IK-NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT-WNSMITS 332



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 164/371 (44%), Gaps = 61/371 (16%)

Query: 189  ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
            A+  ++ + + N  +W+S++A   +     EAL  F   + LGL   + +    I +C+ 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 249  LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
            L  L+ G+  H      GF +++F +S+L+DMY+KCG + DA  +F  I  +NVV W +M
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 309  ISGFSRHARSVEVMILFE-------KMQQAGLHP-NEQTYISVLSACSHIG--------- 351
            I+G+ ++ ++   ++LF+       +++     P +    +SVLSACS +          
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274

Query: 352  --MVEKG------------------------KSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
              +V+KG                        K  FD M ++ ++      ++ MI +  +
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDI-----SWNSMIAVYAQ 1329

Query: 386  AGLIHEA----YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
            +GL  EA    + ++ ++     A    ++L +C +   L   +    Q+  M  D   N
Sbjct: 1330 SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM--DLEYN 1387

Query: 442  HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-IKGKRNHPRIAEIYSKLEKL 500
              + ++I     +   V  A+K      +K++  KSW   + G   H R  E      K+
Sbjct: 1388 VCVGTSIIDMYCKCGRVEMAKKTF--DRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKM 1445

Query: 501  VEEMKKLGYKP 511
            V    + G KP
Sbjct: 1446 V----RAGVKP 1452


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 370/578 (64%), Gaps = 13/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           T  + L +C        GK  H+++I +GL  D      L++ Y+KC   G +  +RKVF
Sbjct: 233 TYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 292

Query: 92  DEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           ++MP+  ++SW  II +Y  +G  ++EA+ LF  M+     P + F+ SSVL AC    D
Sbjct: 293 EQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRP-NHFSFSSVLKACGNLSD 351

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            +  +Q++ +A+K  +     VG +L+ +YA+ G + DA + F+ + E+N V+++++V G
Sbjct: 352 PYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 411

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N   EEA +LF      G+  + FT +S++   A + A+ +G+Q+H  L K G+ SN
Sbjct: 412 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN 471

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+ MY++CG +  A+ VF+ +E++NV+ W +MI+GF++H  +   + +F KM +
Sbjct: 472 QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLE 531

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  PNE TY++VLSACSH+GM+ +G+ +F+ M K+H ++P + HY+CM+D+LGR+GL+ 
Sbjct: 532 TGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLV 591

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA + I +MP  A A +W +LL +CR + N EL   AA+ +   EPD+   ++LLSN++A
Sbjct: 592 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 651

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           +  +W++V + RK +++  + KE   SW+E++        G+ +HP+  +IY +L++L  
Sbjct: 652 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 711

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++K++GY P+T+  LHD+E+ +K++ L  HSEK+A+ FGL+      PIRI KNLR+CGD
Sbjct: 712 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 771

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K+ S   GRE +VRD NRFHH  NG CSC D+W
Sbjct: 772 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 199/368 (54%), Gaps = 9/368 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T    L+SC R R    GK+ H K++  GL  D++  N LI+ YSKCG    AR +F
Sbjct: 25  DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 84

Query: 92  DEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           + M  +R +VSW+ ++  +  N  E +A+  F++ML  G  P +E+  ++V+ AC+    
Sbjct: 85  EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP-NEYCFAAVIRACSNANY 143

Query: 151 VFECKQLHVFALKAA-MDRNVFVGTALLDVYAK-CGLISDASRVFESMPERNEVTWSSMV 208
            +  + ++ F +K   ++ +V VG  L+D++ K  G +  A +VF+ MPERN VTW+ M+
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
             F Q     +A+ LF   ++ G   ++FT SSV+ AC  L  L  GKQ+H+ + + G  
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 263

Query: 269 SNMFAASSLVDMYAKC---GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-SVEVMIL 324
            ++    SLVDMYAKC   G V D+  VF  + E NV+ W  +I+ + +      E + L
Sbjct: 264 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 323

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F KM    + PN  ++ SVL AC ++     G+  +   VK      N    S +I +  
Sbjct: 324 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS-LISMYA 382

Query: 385 RAGLIHEA 392
           R+G + +A
Sbjct: 383 RSGRMEDA 390



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 134/248 (54%), Gaps = 4/248 (1%)

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           GR   A +  ++++ +   P    T S +L +C   R+    K +H   +++ ++ +  V
Sbjct: 5   GRLHHAFST-LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 63

Query: 173 GTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
              L+ +Y+KCG    A  +FE M  +R+ V+WS+MV+ F  N +  +A+  F     LG
Sbjct: 64  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSNMFAASSLVDMYAK-CGCVVD 289
              N++  ++VI AC+       G+ ++  + KTG+  +++     L+DM+ K  G +  
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           AY VF  + E+N+V W  MI+ F++   + + + LF  M+ +G  P+  TY SVLSAC+ 
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 350 IGMVEKGK 357
           +G++  GK
Sbjct: 244 LGLLALGK 251


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/573 (42%), Positives = 350/573 (61%), Gaps = 9/573 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + L++CA   A   G+  H  +I    ++D      L++ Y+K   +  A KVFD M 
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 365

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            R ++ WN +I   +  GR  EA ++F  + +EG    +  T+++VL + A+       +
Sbjct: 366 HRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG-LGVNRTTLAAVLKSTASLEAASATR 424

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H  A K     +  V   L+D Y KC  +SDA RVFE     + +  +SM+    Q +
Sbjct: 425 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 484

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
             E A+ LF      GLE + F +SS++ ACA L+A  QGKQVHA L K  F S+ FA +
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV  YAKCG + DA   FS + E+ VV W+ MI G ++H      + LF +M   G++P
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N  T  SVL AC+H G+V++ K YF+ M +   +     HYSCMID+LGRAG + +A +L
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMEL 664

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           + +MPF A AS+WG+LL + R +++ EL ++AA++LF +EP+ +G H+LL+N YA++  W
Sbjct: 665 VNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMW 724

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKL 507
            EVA+ RKL++DS +KKE + SWVE+K        G ++HP   EIYSKL++L + M K 
Sbjct: 725 NEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKA 784

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY P  + DLHD++ S K+ LL HHSE+LA+ F L+   PG PIR+ KNLRIC DCH   
Sbjct: 785 GYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAF 844

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KF S I  RE I+RD+NRFHHF +G+CSC D+W
Sbjct: 845 KFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 208/416 (50%), Gaps = 11/416 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + +C   R    G+  HA ++ MG   D  T+N L++ Y K G +  A  +F++MP   
Sbjct: 208 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD 267

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +VSWN +I     NG +  A+ L + M   G  P + F +SS+L ACA        +Q+H
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVP-NVFMLSSILKACAGAGAFDLGRQIH 326

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F +KA  D + ++G  L+D+YAK   + DA +VF+ M  R+ + W+++++G      ++
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 386

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA  +F   +  GL  N+ T+++V+ + A L A    +QVHA+  K GF  +    + L+
Sbjct: 387 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLI 446

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           D Y KC C+ DA  VF      +++   +MI+  S+       + LF +M + GL P+  
Sbjct: 447 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
              S+L+AC+ +   E+GK     ++K+   + + F  + ++    + G I +A     +
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 399 MPFDATAS---MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           +P     S   M G L       R LEL      +  G+ P    NH+ ++++  A
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDE--GINP----NHITMTSVLCA 615



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 164/300 (54%), Gaps = 2/300 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM-PQRCIVSWNTIIGSYT 110
           G   HA  +  G  +D   +N L+  Y   G +  AR+VFDE   +R  VSWN ++ +Y 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 178

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +  +A+ +F  M+  G  P +EF  S V+ AC   R++   +Q+H   ++   +++V
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQP-TEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDV 237

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F   AL+D+Y K G +  AS +FE MP+ + V+W+++++G V N     A+ L  + +  
Sbjct: 238 FTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSS 297

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  N F +SS++ ACAG  A   G+Q+H  + K    S+ +    LVDMYAK   + DA
Sbjct: 298 GLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +  ++++LWN +ISG S   R  E   +F  +++ GL  N  T  +VL + + +
Sbjct: 358 MKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASL 417



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 202/389 (51%), Gaps = 23/389 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS--NILINFYSKCGLISGARKVFD 92
           T+   L   A  +A + G   HA ++  G     L S  N LI+FYSKC     AR+VFD
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHANLLKSGF----LASLRNHLISFYSKCRRPCCARRVFD 61

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDV 151
           E+P  C VSW++++ +Y+ NG  + A+  F  M  EG    +EF +  VL C   A+   
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKCVPDAQLGA 120

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF-ESMPERNEVTWSSMVAG 210
               Q+H  A+      +VFV  AL+ +Y   G + DA RVF E+  ERN V+W+ +++ 
Sbjct: 121 ----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 176

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V+N+   +A+ +F      G++  +F  S V+ AC G   +  G+QVHA++ + G+  +
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 236

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F A++LVDMY K G V  A  +F  + + +VV WN +ISG   +      + L  +M+ 
Sbjct: 237 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 296

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           +GL PN     S+L AC+  G  + G+     M+K  N   + +    ++D+  +   + 
Sbjct: 297 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA-NADSDDYIGVGLVDMYAKNHFLD 355

Query: 391 EAYDLILNMPFDATAS----MWGSLLASC 415
           +A  +     FD  +     +W +L++ C
Sbjct: 356 DAMKV-----FDWMSHRDLILWNALISGC 379



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 149/291 (51%), Gaps = 6/291 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L+S A   A    +  HA    +G   D    N LI+ Y KC  +S A +VF+E
Sbjct: 405 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 464

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                I++  ++I + +     + A+ LF+ MLR+G  P   F +SS+L ACA+     +
Sbjct: 465 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP-DPFVLSSLLNACASLSAYEQ 523

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     + F G AL+  YAKCG I DA   F S+PER  V+WS+M+ G  Q
Sbjct: 524 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQ 583

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   + AL LF R    G+  N  T++SV+CAC   A L+   + +    K  FG +   
Sbjct: 584 HGHGKRALELFGRMVDEGINPNHITMTSVLCAC-NHAGLVDEAKRYFNSMKEMFGIDRTE 642

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
              S ++D+  + G + DA  + + +  + N  +W  ++ G SR  +  E+
Sbjct: 643 EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALL-GASRVHKDPEL 692


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 349/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CAR      G   H+ ++  G   D      LIN Y+KCG I  A KVFD++
Sbjct: 110 TFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDI 169

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P +   SW   I  Y   G+ +EA+ +F  +L  G  P S F++  VL AC    D+   
Sbjct: 170 PDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDS-FSLVEVLSACKRTGDLRSG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +  +  M RNVFV TAL+D Y KCG +  A  VF+ M E+N V+WSSM+ G+  N
Sbjct: 229 EWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L +EAL LF +    GL+ + + +  V+C+CA L AL  G     ++    F  N    
Sbjct: 289 GLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLG 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG +  A+ VF G+ +K+ V+WN  ISG +      + + LF +M+++G+ 
Sbjct: 349 TALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIK 408

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ +L AC+H G+VE+G+ YF+ M     + P + HY CM+D+LGRAG + EA+ 
Sbjct: 409 PDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQ 468

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI +MP +A A +WG+LL  CR +R+ +L E+  K+L  +EP ++GN++LLSNIYAA+ +
Sbjct: 469 LIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHK 528

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WEE A+ R ++ +  VKK    SW+E+         G  +HP   +IY+KL +L +++K 
Sbjct: 529 WEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKA 588

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P T+H L D+E+  K+  +  HSEKLA+ FGL+   P   I ++KNLR+CGDCH  
Sbjct: 589 AGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEA 648

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  SRIAGRE IVRD NRFH FT+G CSC D+W
Sbjct: 649 IKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 189/344 (54%), Gaps = 2/344 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA ++ +GL+ DT   N ++ F    G  + + ++ D+  +  I  +NT+I     N   
Sbjct: 30  HAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCF 89

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           QE++ ++ +M +EG +P S FT   VL ACA   D     ++H   +KA  + + FV  +
Sbjct: 90  QESIEIYHSMRKEGLSPDS-FTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKIS 148

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++Y KCG I +A +VF+ +P++N  +W++ ++G+V      EA+ +FRR   +GL  +
Sbjct: 149 LINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPD 208

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            F++  V+ AC     L  G+ +   + + G   N+F A++LVD Y KCG +  A  VF 
Sbjct: 209 SFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFD 268

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           G+ EKN+V W++MI G++ +    E + LF KM   GL P+    + VL +C+ +G +E 
Sbjct: 269 GMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALEL 328

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           G  +   ++  +  L N    + +ID+  + G +  A+++   M
Sbjct: 329 G-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 2/167 (1%)

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           G + L   K +HA L + G   + +  + ++      G    ++ +    +E N+ L+NT
Sbjct: 19  GFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNT 78

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI G   +    E + ++  M++ GL P+  T+  VL AC+ +   E G     L+VK  
Sbjct: 79  MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKA- 137

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
               + F    +I++  + G I  A+ +  ++P D   + W + ++ 
Sbjct: 138 GCEADAFVKISLINLYTKCGFIDNAFKVFDDIP-DKNFASWTATISG 183


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/589 (40%), Positives = 372/589 (63%), Gaps = 15/589 (2%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           I   S   + T  +TL   L+ C +      GK+ H  ++     +D +  N L+  Y++
Sbjct: 65  IDCGSLEPDRTLYNTL---LKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYAR 121

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG + GAR++FDEMP R +VSW ++I  Y  N R  +A+ LF  ML +G  P +EFT+SS
Sbjct: 122 CGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEP-NEFTLSS 180

Query: 141 VLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
            L  C      + C +Q+H    K     NVFVG++L+D+YA+CG + +A  VF+ +  +
Sbjct: 181 -LVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCK 239

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           NEV+W++++AG+ +    EEAL LF R Q  G    +FT S+++ +C+ +  L QGK +H
Sbjct: 240 NEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLH 299

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A L K+      +  ++L+ MYAK G + DA  VF  + + +VV  N+M+ G+++H    
Sbjct: 300 AHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGK 359

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E    F++M + G+ PN+ T++SVL+ACSH  ++++GK YF LM +++N+ P V HY+ +
Sbjct: 360 EAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATI 418

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGRAGL+ +A   I  MP + T ++WG+LL + + ++N E+   AA+++F ++P   
Sbjct: 419 VDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYP 478

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIA 491
           G H LL+NIYA+  RWE+VA+ RK+++DS VKKE + SWVE++   +        HP+  
Sbjct: 479 GTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKE 538

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           +I+   EKL +++K++GY P+T H L  V+   K+  L +HSEKLAL+F L+   PG  I
Sbjct: 539 KIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTI 598

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RIMKN+R+CGDCHS +K+ S +  RE IVRD NRFHHF +G CSC D+W
Sbjct: 599 RIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/603 (39%), Positives = 364/603 (60%), Gaps = 41/603 (6%)

Query: 38  ATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           +TL   A +R  V+ G+  H  ++  G  +     + L++ YSK G+IS ARKVFDE+P+
Sbjct: 147 STLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPE 206

Query: 97  RCIV-------------------------------SWNTIIGSYTTNGREQEAVALFINM 125
           + +V                               SW ++I  +T NG +++A+ +F  M
Sbjct: 207 KNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREM 266

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
             E      ++T  SVL AC     + E KQ+H + ++     N+FV +AL+D+Y KC  
Sbjct: 267 KLE-NLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKN 325

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I  A  VF+ M  +N V+W++M+ G+ QN   EEA+  F   Q  G+E + FT+ SVI +
Sbjct: 326 IKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISS 385

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA LA+L +G Q HA    +G  S +  +++LV +Y KCG + D++ +F+ I  K+ V W
Sbjct: 386 CANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTW 445

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             ++SG+++  ++ E + LFE M   GL P++ T+I VLSACS  G+VEKG   F+ M+ 
Sbjct: 446 TALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMIN 505

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
           +H ++P   HY+CMID+  RAG I EA + I  MPF   A  W +LL+SCR Y N+++ +
Sbjct: 506 EHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGK 565

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK- 484
            AA+ L  ++P N  +++LLS++YAA  +WEEVAR RK +RD  ++KE   SW++ K + 
Sbjct: 566 WAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQV 625

Query: 485 -------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                  +++P   +IYS+LEKL  +M K GY P+    LHDV DS K ++L HHSEKLA
Sbjct: 626 HVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLA 685

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+ + PG+PIR++KNLR+C DCH+  K+ S+I  RE +VRD  RFH F +G+CSC 
Sbjct: 686 IAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCG 745

Query: 598 DFW 600
           DFW
Sbjct: 746 DFW 748



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 224/465 (48%), Gaps = 67/465 (14%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L+ C       + K  H+ II      +T   N LI+ Y+K G I  A KVFD+MP  
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLR------------------------------ 127
            + SWNTI+ +Y+  GR  E   LF  M R                              
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 128 --EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
             +G    +  T S++L   + +  V   +Q+H   +K      VFVG+ L+D+Y+K G+
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 186 ISDASRVFESMPERN-------------------------------EVTWSSMVAGFVQN 214
           IS A +VF+ +PE+N                                ++W+SM+ GF QN
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN 253

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  +A+ +FR  ++  L+ +Q+T  SV+ AC G+ AL +GKQVHA + +T +  N+F A
Sbjct: 254 GLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVA 313

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S+LVDMY KC  +  A  VF  +  KNVV W  M+ G+ ++  S E +  F  MQ+ G+ 
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++ T  SV+S+C+++  +E+G + F        ++  +   + ++ + G+ G I +++ 
Sbjct: 374 PDDFTLGSVISSCANLASLEEG-AQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHR 432

Query: 395 LILNMPFDATASMWGSLLASCRNY--RNLELAEIAAKQLFGMEPD 437
           L   + F    + W +L++    +   N  +    +    G++PD
Sbjct: 433 LFNEISFKDEVT-WTALVSGYAQFGKANETIGLFESMLAHGLKPD 476



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 154/337 (45%), Gaps = 36/337 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C    A   GK  HA II     ++   ++ L++ Y KC  I  A  VF +M
Sbjct: 277 TFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKM 336

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW  ++  Y  NG  +EAV  F +M + G  P  +FT+ SV+ +CA    + E 
Sbjct: 337 TCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEP-DDFTLGSVISSCANLASLEEG 395

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q H  AL + +   + V  AL+ +Y KCG I D+ R+F  +  ++EVTW+++V+G+ Q 
Sbjct: 396 AQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQF 455

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               E + LF      GL+ ++ T   V+ AC+    + +G Q+           +M   
Sbjct: 456 GKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIF---------ESMINE 506

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             +V +     C++D                      FSR  R  E      KM      
Sbjct: 507 HGIVPIQDHYTCMIDL---------------------FSRAGRIEEARNFINKMP---FS 542

Query: 335 PNEQTYISVLSACSHIGMVEKGK--SYFDLMVKQHNV 369
           P+  ++ ++LS+C   G ++ GK  + F + +  HN 
Sbjct: 543 PDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNT 579



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 147/306 (48%), Gaps = 39/306 (12%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL----ILF 224
           N++    +L  Y+K G +S+   +F++MP R+ V+W+S+++G+    L  +++    ++ 
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           +      L  N+ T S+++   +    +  G+Q+H  + K GF S +F  S LVDMY+K 
Sbjct: 134 KNDGSFNL--NRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 285 GCVVDAYFVFSGIEEKNVVLWNT-------------------------------MISGFS 313
           G +  A  VF  + EKNVV++NT                               MI+GF+
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           ++    + + +F +M+   L  ++ T+ SVL+AC  +  +++GK     +++  +   N+
Sbjct: 252 QNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-DYKDNI 310

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN-YRNLELAEIAAKQLF 432
           F  S ++D+  +   I  A  +   M      S    L+   +N Y    +   +  Q +
Sbjct: 311 FVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKY 370

Query: 433 GMEPDN 438
           G+EPD+
Sbjct: 371 GIEPDD 376


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/573 (42%), Positives = 350/573 (61%), Gaps = 9/573 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + L++CA   A   G+  H  +I    ++D      L++ Y+K   +  A KVFD M 
Sbjct: 213 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 272

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            R ++ WN +I   +  GR  EA ++F  + +EG    +  T+++VL + A+       +
Sbjct: 273 HRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG-LGVNRTTLAAVLKSTASLEAASATR 331

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H  A K     +  V   L+D Y KC  +SDA RVFE     + +  +SM+    Q +
Sbjct: 332 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 391

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
             E A+ LF      GLE + F +SS++ ACA L+A  QGKQVHA L K  F S+ FA +
Sbjct: 392 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 451

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV  YAKCG + DA   FS + E+ VV W+ MI G ++H      + LF +M   G++P
Sbjct: 452 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 511

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N  T  SVL AC+H G+V++ K YF+ M +   +     HYSCMID+LGRAG + +A +L
Sbjct: 512 NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMEL 571

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           + +MPF A AS+WG+LL + R +++ EL ++AA++LF +EP+ +G H+LL+N YA++  W
Sbjct: 572 VNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMW 631

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKL 507
            EVA+ RKL++DS +KKE + SWVE+K        G ++HP   EIYSKL++L + M K 
Sbjct: 632 NEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKA 691

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY P  + DLHD++ S K+ LL HHSE+LA+ F L+   PG PIR+ KNLRIC DCH   
Sbjct: 692 GYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAF 751

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KF S I  RE I+RD+NRFHHF +G+CSC D+W
Sbjct: 752 KFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 208/416 (50%), Gaps = 11/416 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + +C   R    G+  HA ++ MG   D  T+N L++ Y K G +  A  +F++MP   
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD 174

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +VSWN +I     NG +  A+ L + M   G  P + F +SS+L ACA        +Q+H
Sbjct: 175 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVP-NVFMLSSILKACAGAGAFDLGRQIH 233

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F +KA  D + ++G  L+D+YAK   + DA +VF+ M  R+ + W+++++G      ++
Sbjct: 234 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 293

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA  +F   +  GL  N+ T+++V+ + A L A    +QVHA+  K GF  +    + L+
Sbjct: 294 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLI 353

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           D Y KC C+ DA  VF      +++   +MI+  S+       + LF +M + GL P+  
Sbjct: 354 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 413

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
              S+L+AC+ +   E+GK     ++K+   + + F  + ++    + G I +A     +
Sbjct: 414 VLSSLLNACASLSAYEQGKQVHAHLIKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSS 472

Query: 399 MPFDATAS---MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           +P     S   M G L       R LEL      +  G+ P    NH+ ++++  A
Sbjct: 473 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDE--GINP----NHITMTSVLCA 522



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 164/300 (54%), Gaps = 2/300 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM-PQRCIVSWNTIIGSYT 110
           G   HA  +  G  +D   +N L+  Y   G +  AR+VFDE   +R  VSWN ++ +Y 
Sbjct: 26  GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 85

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +  +A+ +F  M+  G  P +EF  S V+ AC   R++   +Q+H   ++   +++V
Sbjct: 86  KNDQCGDAIQVFGEMVWSGIQP-TEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDV 144

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F   AL+D+Y K G +  AS +FE MP+ + V+W+++++G V N     A+ L  + +  
Sbjct: 145 FTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSS 204

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  N F +SS++ ACAG  A   G+Q+H  + K    S+ +    LVDMYAK   + DA
Sbjct: 205 GLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 264

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +  ++++LWN +ISG S   R  E   +F  +++ GL  N  T  +VL + + +
Sbjct: 265 MKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASL 324



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 149/291 (51%), Gaps = 6/291 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L+S A   A    +  HA    +G   D    N LI+ Y KC  +S A +VF+E
Sbjct: 312 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 371

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                I++  ++I + +     + A+ LF+ MLR+G  P   F +SS+L ACA+     +
Sbjct: 372 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP-DPFVLSSLLNACASLSAYEQ 430

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     + F G AL+  YAKCG I DA   F S+PER  V+WS+M+ G  Q
Sbjct: 431 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQ 490

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   + AL LF R    G+  N  T++SV+CAC   A L+   + +    K  FG +   
Sbjct: 491 HGHGKRALELFGRMVDEGINPNHITMTSVLCAC-NHAGLVDEAKRYFNSMKEMFGIDRTE 549

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
              S ++D+  + G + DA  + + +  + N  +W  ++ G SR  +  E+
Sbjct: 550 EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALL-GASRVHKDPEL 599


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/583 (40%), Positives = 355/583 (60%), Gaps = 16/583 (2%)

Query: 34   STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            S+   T++SC+     V G++ H +    G   D   S+ LI+ YSKCG +  AR +FDE
Sbjct: 2016 SSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDE 2075

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE-------GKTPYSEFTVSSVLCACA 146
            +P R +VSW ++I  Y  N +   A+ LF + L E          P     + SVL AC+
Sbjct: 2076 IPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135

Query: 147  AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
                    + +H F +K   D ++ VG  L+D YAKCG    + +VF+ M E+++++W+S
Sbjct: 2136 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 2195

Query: 207  MVAGFVQNELYEEALILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
            M+A + Q+ L  EAL +F    + +G+ YN  T+S+V+ ACA   AL  GK +H  + K 
Sbjct: 2196 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 2255

Query: 266  GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
                N+   +S++DMY KCG V  A   F  ++EKNV  W  M++G+  H R+ E + +F
Sbjct: 2256 DLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF 2315

Query: 326  EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             KM +AG+ PN  T++SVL+ACSH G+VE+G  +F+ M  ++++ P + HY CM+D+ GR
Sbjct: 2316 YKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGR 2375

Query: 386  AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
            AG ++EAY+LI  M       +WGSLL +CR ++N++L EIAA++LF ++PDN G ++LL
Sbjct: 2376 AGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLL 2435

Query: 446  SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
            SN+YA   RW +V R R L+++ ++ K    S VE+KG+        + HP    IY  L
Sbjct: 2436 SNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYL 2495

Query: 498  EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
            EKL  E++K+GY P     LHDV++  K+ +L  HSEKLA+ FG+M   PG  I I+KNL
Sbjct: 2496 EKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNL 2555

Query: 558  RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            R+CGDCH+ +K  S++  R+ +VRD  RFHHF +G CSC D+W
Sbjct: 2556 RVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 206/399 (51%), Gaps = 43/399 (10%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HAKII  GL+ND L +  LI+ YS  G I+ A  +F ++   C  +WN II + T NG  
Sbjct: 47  HAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           ++A+ L+ NM+ +G     +FT   V+ AC     +   K +H   +K     +VFV   
Sbjct: 107 EQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 176 LLDVYAKCG--------------------------LIS-----DASRVFESMPERNEVTW 204
           L+D Y KCG                          LIS     +A R+F+ +P +N V+W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           ++M+ G+++N+  EEAL LF+R Q   +  N++T+ S+I AC  +  L  G+ +H    K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                 ++  ++L+DMY+KCG + DA  VF  +  K++  WN+MI+    H    E + L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M++  + P+  T+I VL AC HI  V++G +YF  M + + + P   HY CM ++  
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 385 RAGLIHEAYD------LILNMP---FDATASM--WGSLL 412
           R+  + EA+        + N P   FDA A    W  LL
Sbjct: 406 RSNNLDEAFKSTKEVGSLANSPSICFDARAKQVAWTQLL 444



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 167/339 (49%), Gaps = 12/339 (3%)

Query: 13   YKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
            +K F          N    +   + + L +C+R       +  H  ++  G +      N
Sbjct: 2104 FKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGN 2163

Query: 73   ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
             L++ Y+KCG    ++KVFD M ++  +SWN++I  Y  +G   EA+ +F  M+R     
Sbjct: 2164 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 2223

Query: 133  YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
            Y+  T+S+VL ACA    +   K +H   +K  ++ NV VGT+++D+Y KCG +  A + 
Sbjct: 2224 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 2283

Query: 193  FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
            F+ M E+N  +W++MVAG+  +   +EAL +F +    G++ N  T  SV+ AC+    +
Sbjct: 2284 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLV 2343

Query: 253  IQGKQ-VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMIS 310
             +G    +A+  K      +     +VD++ + GC+ +AY +   ++ K + V+W +++ 
Sbjct: 2344 EEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLG 2403

Query: 311  GFSRHAR----SVEVMILFEKMQQAGLHPNEQTYISVLS 345
                H       +    LFE      L P+   Y  +LS
Sbjct: 2404 ACRIHKNVDLGEIAAQKLFE------LDPDNCGYYVLLS 2436



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 32/257 (12%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------- 82
           A +  T    +++C    +   GKV H  +I  G + D    N LI+FY KCG       
Sbjct: 122 AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALK 181

Query: 83  ---------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
                          +ISG         AR++FDE+P + +VSW  +I  Y  N + +EA
Sbjct: 182 VFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEA 241

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           + LF  M  E   P +E+T+ S++ AC     +   + +H +A+K  ++  V++GTAL+D
Sbjct: 242 LELFKRMQAENIFP-NEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALID 300

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+KCG I DA  VFE+MP ++  TW+SM+     + L +EAL LF   + + ++ +  T
Sbjct: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360

Query: 239 ISSVICACAGLAALIQG 255
              V+CAC  +  + +G
Sbjct: 361 FIGVLCACVHIKNVKEG 377



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 33/291 (11%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +++ +  +  +   L+ +Y+  G I+ A  +F  +      TW+ ++     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L E+AL+L++     G+  ++FT   VI AC    ++  GK VH  L K GF  ++F  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT--------------------------- 307
           ++L+D Y KCG    A  VF  +  +NVV W T                           
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 308 ----MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
               MI+G+ R+ +  E + LF++MQ   + PNE T +S++ AC+ +G++  G+   D  
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +K + +   V+  + +ID+  + G I +A ++   MP  +  + W S++ S
Sbjct: 284 IK-NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT-WNSMITS 332



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 189  ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
            A+  ++ + + N  +W+S++A   +     EAL  F   + LGL   + +    I +C+ 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 249  LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
            L  L+ G+  H      GF +++F +S+L+DMY+KCG + DA  +F  I  +NVV W +M
Sbjct: 2028 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 2087

Query: 309  ISGFSRHARSVEVMILFE-------KMQQAGLHP-NEQTYISVLSACSHI 350
            I+G+ ++ ++   ++LF+       +++     P +    +SVLSACS +
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 2137


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/623 (39%), Positives = 373/623 (59%), Gaps = 30/623 (4%)

Query: 6   RYKHKFYYKSFSSSA-----IASASANANATELSTL---------------QATLQSCAR 45
           RY H+   K ++S+A     I+  S+ A++T L  L                + + +CA+
Sbjct: 13  RYIHRRTSKPYTSAAHRAVPISFPSSPASSTGLRELDLLHAGELAPTPRLYHSIIAACAQ 72

Query: 46  ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTI 105
            +     +  HA +    L  D    N LI+ Y KCG +S AR VFD+MP R +VSW  +
Sbjct: 73  FKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYL 132

Query: 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA 165
           I  Y  N    EA+ L  +MLR    P + FT +S+L A  A       +Q+H  A+K  
Sbjct: 133 IAGYAQNYMPAEAIGLLPDMLRARFRP-NGFTFTSLLKATGACGGCSIGEQMHALAVKYN 191

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
            D +V+VG+ALLD+YA+C  +  A  VF+ +  +NEV+W++++AGF +    E  L+ F 
Sbjct: 192 WDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFA 251

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
             Q  G     FT SS+  A A + AL QG+ VHA L K+G     F  ++++ MYAK G
Sbjct: 252 EMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSG 311

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            +VDA  VF  ++++++V WNTM++  +++    E +  FE++++ G+  N+ T++SVL+
Sbjct: 312 SMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLT 371

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           ACSH G+V++GK YFD+M K +NV P + HY   +D+LGRAGL+ EA   +  MP + TA
Sbjct: 372 ACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTA 430

Query: 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465
           ++WG+LL +CR ++N ++ + AA  +F ++PD+ G  +LL NIYA+  +W + AR RK++
Sbjct: 431 AVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMM 490

Query: 466 RDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517
           + + VKKE + SWV+I+            HP+  +IY   E++   +KK GY P T H L
Sbjct: 491 KATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVL 550

Query: 518 HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRE 577
             + +  ++  L +HSEK+AL F L+ +  G  IRIMKN+RICGDCHS  K+ S++  RE
Sbjct: 551 LHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKRE 610

Query: 578 TIVRDLNRFHHFTNGSCSCWDFW 600
            +VRD NRFHHF+ GSCSC D+W
Sbjct: 611 IVVRDTNRFHHFSEGSCSCGDYW 633


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/553 (42%), Positives = 352/553 (63%), Gaps = 9/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  +I    ++D      L++ Y+K GL+  ARKVF+ +P++ ++ WN +I   +  G  
Sbjct: 328 HGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCH 387

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            E+++LF  M +EG +  +  T+++VL + A+   + +  Q+H  A K     +  V   
Sbjct: 388 GESLSLFCRMRKEG-SDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D Y KC  +  A++VFE     N + ++SM+    Q +  E+A+ LF      GLE +
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            F +SS++ ACA L+A  QGKQVHA L K  F +++FA ++LV  YAKCG + DA   FS
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFS 566

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           G+ +K VV W+ MI G ++H      + +F +M    + PN  T  SVL AC+H G+V++
Sbjct: 567 GLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDE 626

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
            K YF  M +   +     HYSCMID+LGRAG + +A +L+ +MPF+A A++WG+LLA+ 
Sbjct: 627 AKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAAS 686

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R +R+ EL ++AA++LF +EP+ +G H+LL+N YA+   W+EVA+ RKL++DS+VKKE +
Sbjct: 687 RVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPA 746

Query: 476 KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            SWVE+K        G ++HPR  +IY+KLE+L + M K GY P  E DLHDV+ S K+ 
Sbjct: 747 MSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKEL 806

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           LL HHSE+LA+ F L+    G PIR+ KNLRIC DCH   KF S+I  RE I+RD+NRFH
Sbjct: 807 LLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFH 866

Query: 588 HFTNGSCSCWDFW 600
           HF++G+CSC D+W
Sbjct: 867 HFSDGACSCGDYW 879



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 221/415 (53%), Gaps = 7/415 (1%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + +C   R    G+  HA ++  G + D  T+N L++ YSK G I  A  VF ++P+  
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTD 267

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL--CACAAKRDVFECKQ 156
           +VSWN  I     +G +Q A+ L + M   G  P + FT+SS+L  CA A        +Q
Sbjct: 268 VVSWNAFISGCVLHGHDQHALELLLQMKSSGLVP-NVFTLSSILKACAGAGAGAFALGRQ 326

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H F +KA  D + ++G AL+D+YAK GL+ DA +VFE +P ++ + W+++++G      
Sbjct: 327 IHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGC 386

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           + E+L LF R +  G + N+ T+++V+ + A L A+    QVHA+  K GF S+    + 
Sbjct: 387 HGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+D Y KC C+  A  VF      N++ + +MI+  S+     + + LF +M + GL P+
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
                S+L+AC+ +   E+GK     ++K+   + +VF  + ++    + G I +A DL 
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKR-KFMTDVFAGNALVYTYAKCGSIEDA-DLA 564

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
            +   D     W +++     + + + A    +++  ++   A NH+ L+++  A
Sbjct: 565 FSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRM--VDERIAPNHITLTSVLCA 617



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 167/295 (56%), Gaps = 9/295 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA ++  GL +     N L++FYSKC L   AR+VFDE P  C VSW++++ +Y+ 
Sbjct: 23  GAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLHVFALKAAMDRNV 170
           N   +EA+A F  M   G    +EF +  VL CA  A   V    Q+H  A+   +  ++
Sbjct: 81  NALPREALAAFRAMRARG-VRCNEFALPIVLKCAPDAGLGV----QVHAVAVSTGLSGDI 135

Query: 171 FVGTALLDVYAKCGLISDASRVF-ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           FV  AL+ +Y   G + +A RVF E+  +RN V+W+ M++ FV+N+   +A+ LF     
Sbjct: 136 FVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVW 195

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G+  N+F  S V+ AC G   L  G++VHA++ +TG+  ++F A++LVDMY+K G +  
Sbjct: 196 SGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHM 255

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           A  VF  + + +VV WN  ISG   H      + L  +M+ +GL PN  T  S+L
Sbjct: 256 AALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 151/291 (51%), Gaps = 6/291 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L+S A   A       HA    +G  +D+   N LI+ Y KC  +  A KVF+E
Sbjct: 407 TTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEE 466

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                I+++ ++I + +     ++A+ LF+ MLR+G  P   F +SS+L ACA+     +
Sbjct: 467 HSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEP-DPFVLSSLLNACASLSAYEQ 525

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     +VF G AL+  YAKCG I DA   F  +P++  V+WS+M+ G  Q
Sbjct: 526 GKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQ 585

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   + AL +FRR     +  N  T++SV+CAC   A L+   + +    K  FG +   
Sbjct: 586 HGHGKRALDVFRRMVDERIAPNHITLTSVLCAC-NHAGLVDEAKGYFSSMKEMFGIDRTE 644

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
              S ++D+  + G + DA  + + +  E N  +W  +++  SR  R  E+
Sbjct: 645 EHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAA-SRVHRDPEL 694



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 8/205 (3%)

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           +IS ++   A   +L  G  +HA L K+G        + L+  Y+KC     A  VF   
Sbjct: 6   SISPLLTRYAATQSLFLGAHIHAHLLKSGLLHAF--RNHLLSFYSKCRLPGSARRVFDET 63

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            +   V W+++++ +S +A   E +  F  M+  G+  NE     VL      G+   G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL---GV 120

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CR 416
               + V    +  ++F  + ++ + G  G + EA  +      D  A  W  ++++  +
Sbjct: 121 QVHAVAVST-GLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVK 179

Query: 417 NYRNLELAEIAAKQLF-GMEPDNAG 440
           N R  +  E+  + ++ G+ P+  G
Sbjct: 180 NDRCSDAVELFGEMVWSGVRPNEFG 204


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 360/572 (62%), Gaps = 10/572 (1%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
            A + +CA+ +     +  H  +       D    N LI+ Y KCG +  A KVFD+M +
Sbjct: 55  HAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRK 114

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           + +VSW ++I  Y  N    EA+ L   ML+ G+   + FT +S+L A  A  D     Q
Sbjct: 115 KDMVSWTSLIAGYAQNDMPAEAIGLLPGMLK-GRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H  A+K     +V+VG+ALLD+YA+CG +  A+ VF+ +  +N V+W+++++GF +   
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            E AL++F   Q  G E   FT SS+    AG+ AL QGK VHA + K+      F  ++
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNT 293

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           ++DMYAK G ++DA  VF  +  K++V WN+M++ F+++    E +  FE+M+++G++ N
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + T++ +L+ACSH G+V++GK YFD M+K++N+ P + HY  ++D+LGRAGL++ A   I
Sbjct: 354 QITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFI 412

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
             MP + TA++WG+LLA+CR ++N ++ + AA  +F ++PD++G  +LL NIYA+   W+
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWD 472

Query: 457 EVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLG 508
             AR RK+++ + VKKE + SWVEI             HPR  EIY   +++  +++K G
Sbjct: 473 AAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEG 532

Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
           Y P+ ++ L  V++  ++  L +HSEK+AL F L+ +  G  IRIMKN+RICGDCHS  K
Sbjct: 533 YVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFK 592

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + S++  RE +VRD NRFHHF+NGSCSC D+W
Sbjct: 593 YISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/584 (40%), Positives = 364/584 (62%), Gaps = 12/584 (2%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
            A A       A +  C   RA   G+  HA+++  G       +  L+  Y++CG +  
Sbjct: 29  GAGAARFHDYDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALED 88

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  V D MP+R +VSW  +I  Y+ N R  EA  LFI MLR G  P +EFT++SVL +C 
Sbjct: 89  AHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEP-NEFTLASVLTSCT 147

Query: 147 AKRDVFE--CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
             + + +   KQ+H FA+K   + ++FVG++LLD+YA+   I +A RVF+ +P R+ V++
Sbjct: 148 GSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSY 207

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +++++G+ +  L EEAL LFR+    G++ NQ T S ++ A +GL+++  GKQVH ++ +
Sbjct: 208 TTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILR 267

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                 M   +SL+DMY+KCG ++ +  VF  + E++VV WN M+ G+ RH  + EV+ L
Sbjct: 268 RELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQL 327

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M    + P+  T ++VL   SH G+V++G   FD +VK+ + L N  HY C+ID+LG
Sbjct: 328 FRFMCDK-VKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLG 386

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           R+G + +A  LI  MPF  T ++WGSLL +CR + N+ + E  A++LF +EP+NAGN+++
Sbjct: 387 RSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVI 446

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
           LSNIYAA R W++V R RKL+    V KE  +SW+ +          +R HPR  +I  K
Sbjct: 447 LSNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVK 506

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           + ++   +K  G+ P+    LHDV+D +K+ +L+ HSEKLA+TFGLM     + I++MKN
Sbjct: 507 INEIYAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKN 566

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LRIC DCH+F KF S++ GRE  +RD NRFH  T G+C+C D+W
Sbjct: 567 LRICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 359/574 (62%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+R  A  +G+  H +II  G   D      L++ Y+KCG +  AR VF+ +
Sbjct: 409 TFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERI 468

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +V+WN +I +Y  + +   AVA F  +L+EG  P S  T +S+L  C +   +   
Sbjct: 469 SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSS-TFTSILNVCKSPDALELG 527

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +    ++A  + ++ +  AL+ ++  CG +  A  +F  MPER+ V+W++++AGFVQ+
Sbjct: 528 KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQH 587

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              + A   F+  Q  G++ +Q T + ++ ACA   AL +G+++HA++ +     ++   
Sbjct: 588 GENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVG 647

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+ MY KCG + DA+ VF  + +KNV  W +MI+G+++H R  E + LF +MQQ G+ 
Sbjct: 648 TGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVK 707

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++  LSAC+H G++++G  +F+ M K  N+ P + HY CM+D+ GRAGL+HEA +
Sbjct: 708 PDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVE 766

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  M     + +WG+LL +C+ + ++ELAE  A++   ++P++ G +++LSNIYAA   
Sbjct: 767 FINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGM 826

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+EV + RK++ D  V K+  +SW+E+ G+        + HP+I EI+++L +L  EMKK
Sbjct: 827 WKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKK 886

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P+T + LHDVEDS K+  L HHSE+LA+ +GL+   P  PI I KNLR+CGDCH+ 
Sbjct: 887 LGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTA 946

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S+I  R+ I RD NRFHHF +G CSC DFW
Sbjct: 947 TKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 232/407 (57%), Gaps = 5/407 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + LQ C + +    G+  H  I    +  D    N+LI+ Y+KCG  + A+++FDEM
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P + + SWN ++G Y  + R +EA  L   M+++G  P  ++T   +L ACA  ++V + 
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKP-DKYTFVYMLNACADAKNVDKG 224

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            +L    L A  D ++FVGTAL++++ KCG + DA +VF ++P R+ +TW+SM+ G  ++
Sbjct: 225 GELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARH 284

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +++A  LF+  +  G++ ++    S++ AC    AL QGK+VHA + + G  + ++  
Sbjct: 285 RQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVG 344

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MY KCG + DA  VF+ ++ +NVV W  MI+GF++H R  E  + F KM ++G+ 
Sbjct: 345 TALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIE 404

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T++S+L ACS    +++G+   D ++K   +  +    + ++ +  + G + +A +
Sbjct: 405 PNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR-TALLSMYAKCGSLMDARN 463

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNA 439
           +   +      + W +++ +   +   + A    + L   G++PD++
Sbjct: 464 VFERISKQNVVA-WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSS 509



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 215/406 (52%), Gaps = 5/406 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA  +   +G    + I+  G + D      LIN + KCG +  A KVF+ +
Sbjct: 207 TFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNL 266

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +++W ++I     + + ++A  LF  M  EG  P  +    S+L AC     + + 
Sbjct: 267 PRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQP-DKVAFVSLLKACNHPEALEQG 325

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H    +  +D  ++VGTALL +Y KCG + DA  VF  +  RN V+W++M+AGF Q+
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQH 385

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA + F +    G+E N+ T  S++ AC+  +AL QG+Q+H  + K G+ ++    
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MYAKCG ++DA  VF  I ++NVV WN MI+ + +H +    +  F+ + + G+ 
Sbjct: 446 TALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T+ S+L+ C     +E GK    L+++      ++   + ++ +    G +  A +
Sbjct: 506 PDSSTFTSILNVCKSPDALELGKWVQSLIIRA-GFESDLHIRNALVSMFVNCGDLMSAMN 564

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAK--QLFGMEPDN 438
           L  +MP     S W +++A    +   + A    K  Q  G++PD 
Sbjct: 565 LFNDMPERDLVS-WNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQ 609



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 223/400 (55%), Gaps = 5/400 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++C    A  +GK  HA++  +GL+ +      L++ Y+KCG +  A +VF+ +  R +
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNV 372

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  +I  +  +GR +EA   F  M+  G  P +  T  S+L AC+    + + +Q+H 
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEP-NRVTFMSILGACSRPSALKQGRQIHD 431

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +KA    +  V TALL +YAKCG + DA  VFE + ++N V W++M+  +VQ+E Y+ 
Sbjct: 432 RIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDN 491

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+  F+     G++ +  T +S++  C    AL  GK V +++ + GF S++   ++LV 
Sbjct: 492 AVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVS 551

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           M+  CG ++ A  +F+ + E+++V WNT+I+GF +H  +      F+ MQ++G+ P++ T
Sbjct: 552 MFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQIT 611

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +  +L+AC+    + +G+    L + +  +  +V   + +I +  + G I +A+ +  N+
Sbjct: 612 FTGLLNACASPEALTEGRRLHAL-ITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNL 670

Query: 400 PFDATASMWGSLLAS-CRNYRNLELAEIAAK-QLFGMEPD 437
           P     S W S++    ++ R  E  E+  + Q  G++PD
Sbjct: 671 PKKNVYS-WTSMITGYAQHGRGKEALELFCQMQQEGVKPD 709



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 8/315 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + L  C    A   GK   + II  G  +D    N L++ +  CG +  A  +F++
Sbjct: 509 STFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFND 568

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R +VSWNTII  +  +G  Q A   F  M   G  P  + T + +L ACA+   + E
Sbjct: 569 MPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKP-DQITFTGLLNACASPEALTE 627

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            ++LH    +AA+D +V VGT L+ +Y KCG I DA  VF ++P++N  +W+SM+ G+ Q
Sbjct: 628 GRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQ 687

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   +EAL LF + Q  G++ +  T    + ACA    + +G      +        M  
Sbjct: 688 HGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEH 747

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              +VD++ + G + +A    + ++ K +  LW  ++     H   VE   L EK+ Q  
Sbjct: 748 YGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHL-DVE---LAEKVAQKK 803

Query: 333 LH--PNEQTYISVLS 345
           L   PN+     +LS
Sbjct: 804 LELDPNDDGVYVILS 818



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA+++        ++ ++ T SS++  C     L  G+++H  +  +    ++F  + L+
Sbjct: 87  EAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLI 146

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            MYAKCG    A  +F  + +K+V  WN ++ G+ +H R  E   L E+M Q G+ P++ 
Sbjct: 147 SMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKY 206

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T++ +L+AC+    V+KG   F L++       ++F  + +I++  + G + +A  +  N
Sbjct: 207 TFVYMLNACADAKNVDKGGELFSLILNA-GWDTDLFVGTALINMHIKCGGVDDALKVFNN 265

Query: 399 MPFDATASMWGSLLASCRNYRNLELA----EIAAKQLFGMEPD 437
           +P     + W S++     +R  + A    ++  ++  G++PD
Sbjct: 266 LPRRDLIT-WTSMITGLARHRQFKQACNLFQVMEEE--GVQPD 305



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           ++ KN    N  ++  S+  +  E M++   +    +  + QTY S+L  C     +  G
Sbjct: 64  VDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDG 123

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
           +   +  +K   + P++F ++ +I +  + G  + A  +   MP D     W  LL    
Sbjct: 124 ERIHN-HIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMP-DKDVYSWNLLLGGYV 181

Query: 417 NYRNLELAEIAAKQLF--GMEPD 437
            +R  E A    +Q+   G++PD
Sbjct: 182 QHRRYEEAFRLHEQMVQDGVKPD 204


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/574 (43%), Positives = 349/574 (60%), Gaps = 12/574 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L +CA       G+  HA I      ND   +  L++ Y+KCG +  A  VFDEM
Sbjct: 202 TFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEM 261

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN++I  +  N     A+ +F  +L  G     + ++SSVL ACA   ++   
Sbjct: 262 PHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGP---DQVSISSVLSACAGLVELDFG 318

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   +K  +   V+V  +L+D+Y KCGL  DA+++F    +R+ VTW+ M+ G  + 
Sbjct: 319 KQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRC 378

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +E+A   F+     G+E ++ + SS+  A A +AAL QG  +H+ + KTG   N   +
Sbjct: 379 RNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRIS 438

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           SSLV MY KCG ++DAY VF   +E NVV W  MI+ F +H  + E + LFE+M   G+ 
Sbjct: 439 SSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVV 498

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P   T++SVLSACSH G ++ G  YF+ M   HN+ P + HY+CM+D+LGR G + EA  
Sbjct: 499 PEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACR 558

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +MPF+  + +WG+LL +C  + N+E+    A++LF +EPDN GN++LLSNIY  +  
Sbjct: 559 FIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGM 618

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
            EE    R+L+  + V+KE   SW+++K +        R+H R  EIY  L+KL E +K+
Sbjct: 619 LEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKR 678

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY  ET+   + VE S +Q L   HSEKLAL FGL+ L PG P+RI KNLR CGDCH+ 
Sbjct: 679 RGYVAETQFATNSVEGSEEQSLWC-HSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTV 737

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MKFAS I  RE IVRD+NRFH FTNGSCSC D+W
Sbjct: 738 MKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 198/367 (53%), Gaps = 6/367 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           + +  L+  L + A+ ++       H++++    +      N L+  Y+KCG I     +
Sbjct: 95  SSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLL 154

Query: 91  FDEMPQRC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           F+  P     +V+W T+I   + + +  +A+  F  M   G  P + FT S++L ACA  
Sbjct: 155 FNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYP-NHFTFSAILPACAHA 213

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
             + E +Q+H    K     + FV TALLD+YAKCG +  A  VF+ MP RN V+W+SM+
Sbjct: 214 ALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMI 273

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            GFV+N+LY  A+ +FR  +VL L  +Q +ISSV+ ACAGL  L  GKQVH  + K G  
Sbjct: 274 VGFVKNKLYGRAIGVFR--EVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLV 331

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
             ++  +SLVDMY KCG   DA  +F G  +++VV WN MI G  R     +    F+ M
Sbjct: 332 GLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAM 391

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
            + G+ P+E +Y S+  A + I  + +G      ++K  +V  N    S ++ + G+ G 
Sbjct: 392 IREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHV-KNSRISSSLVTMYGKCGS 450

Query: 389 IHEAYDL 395
           + +AY +
Sbjct: 451 MLDAYQV 457



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 146/269 (54%), Gaps = 8/269 (2%)

Query: 175 ALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
            LL +YAKCG I     +F + P    N VTW++++    ++    +AL  F R +  G+
Sbjct: 137 TLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGI 196

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             N FT S+++ ACA  A L +G+Q+HA++ K  F ++ F A++L+DMYAKCG ++ A  
Sbjct: 197 YPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAEN 256

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  +  +N+V WN+MI GF ++      + +F ++   G  P++ +  SVLSAC+ +  
Sbjct: 257 VFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVE 314

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           ++ GK     +VK+  ++  V+  + ++D+  + GL  +A  L      D     W  ++
Sbjct: 315 LDFGKQVHGSIVKR-GLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGG-DRDVVTWNVMI 372

Query: 413 ASCRNYRNLELAEIAAKQLF--GMEPDNA 439
             C   RN E A    + +   G+EPD A
Sbjct: 373 MGCFRCRNFEQACTYFQAMIREGVEPDEA 401


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/604 (40%), Positives = 355/604 (58%), Gaps = 28/604 (4%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK--C 81
           ASA   ++  ++L A L+SCA       G   HA  I  G   D  T+N L+N Y K  C
Sbjct: 41  ASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPC 100

Query: 82  GLISGA-----------------RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
             +                    RKVFDEM +R +VSWNT++      GR  EA+     
Sbjct: 101 SYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRK 160

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M REG  P S FT+S+VL   A   DV    ++H FA +   D +VFVG++L+D+YA C 
Sbjct: 161 MCREGFRPDS-FTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCT 219

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
               + +VF+++P R+ + W+S++AG  QN   EEAL +FRR    G+     T SS+I 
Sbjct: 220 RTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP 279

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            C  LA+L  GKQ+HA +   GF  N+F +SSL+DMY KCG +  A+ +F  +   +VV 
Sbjct: 280 VCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVS 339

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W  MI G++ H  + E ++LFE+M+     PN  T+++VL+ACSH G+V+KG  YF  M 
Sbjct: 340 WTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMS 399

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
             + ++P + H++ + D LGRAG + EAY+ I  M    TAS+W +LL +CR ++N  LA
Sbjct: 400 NHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLA 459

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK 484
           E  AK++  +EP + G+H++LSN+Y+A+ RW E A  R+ +R   +KK+ + SW+E+K K
Sbjct: 460 EEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSK 519

Query: 485 --------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                   R+HP    I   L    E+M + G+ P TE    D+E+  K  +L  HSEKL
Sbjct: 520 LHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKL 579

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A+ FG++    G  IR+MKNLR+C DCH+  KF S++A RE +VRD NRFHHF +G+CSC
Sbjct: 580 AIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSC 639

Query: 597 WDFW 600
            DFW
Sbjct: 640 GDFW 643


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/571 (41%), Positives = 360/571 (63%), Gaps = 11/571 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C  +RA   G+  HA +I          S  LI  Y+KC  +  AR VFDEM +R +
Sbjct: 17  LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  +I  Y+  G   EA+ LF+ MLR    P +EFT ++VL +C         +Q+H 
Sbjct: 77  VSWTAMISGYSQRGFASEALHLFVQMLRSDTEP-NEFTFATVLSSCTGFSGFELGRQIHS 135

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
              K   + ++FVG++LLD+YAK G I +A  VFE +PER+ V+ +++++G+ Q  L EE
Sbjct: 136 HIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 195

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF R Q  G+  N  T +S++ A +GLAAL  GKQVH+ + +      +   +SL+D
Sbjct: 196 ALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLID 255

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ 338
           MY+KCG +  A  +F+ +  + V+ WN M+ G+S+H + +EV+ LF+ M++   + P+  
Sbjct: 256 MYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSV 315

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHN-VLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
           T+++VLS CSH G+ +KG   FD M+   + +   + HY C+ID+LGRAG + EA++LI 
Sbjct: 316 TFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIK 375

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            MPF+ TA++WGSLL +CR + N  + E    +L  +EP+NAGN+++LSN+YA+  RWE+
Sbjct: 376 KMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWED 435

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           V   R+L+ +  V KE  +SW+E+           R+HPR  E++ K+ +L+ + K+ GY
Sbjct: 436 VRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGY 495

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+    L+DV++ +K+++L+ HSEKLAL FGL+    GVP+R++KNLRIC DCH+F KF
Sbjct: 496 VPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKF 555

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++ GR+  +RD NRFHH   G CSC D+W
Sbjct: 556 VSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 156/286 (54%), Gaps = 1/286 (0%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L  C  KR V E +++H   +K      V++ T L+ +Y KC  +  A  VF+ M ERN
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN 75

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            V+W++M++G+ Q     EAL LF +      E N+FT ++V+ +C G +    G+Q+H+
Sbjct: 76  VVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHS 135

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
            + K  + +++F  SSL+DMYAK G + +A  VF  + E++VV    +ISG+++     E
Sbjct: 136 HIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 195

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LF ++Q+ G+  N  TY S+L+A S +  ++ GK     +++       V   S +I
Sbjct: 196 ALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS-LI 254

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           D+  + G ++ A  +  NMP     S    L+   ++ + +E+ ++
Sbjct: 255 DMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKL 300



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 140/288 (48%), Gaps = 5/288 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC        G+  H+ I      N     + L++ Y+K G I  AR VF+ +
Sbjct: 113 TFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECL 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VS   II  Y   G ++EA+ LF  + REG +  +  T +S+L A +    +   
Sbjct: 173 PERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSS-NYVTYASLLTALSGLAALDHG 231

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   L+  +   V +  +L+D+Y+KCG ++ A ++F +MP R  ++W++M+ G+ ++
Sbjct: 232 KQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKH 291

Query: 215 ELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGSNM 271
               E + LF+  +    ++ +  T  +V+  C+      +G ++   +   G    + +
Sbjct: 292 GKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGI 351

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARS 318
                ++D+  + G V +A+ +   +  E    +W +++     H+ +
Sbjct: 352 EHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNT 399


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/574 (41%), Positives = 358/574 (62%), Gaps = 11/574 (1%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
            + L  C  +RA   G+  H  +I             LI  Y+KC  +  AR +FDEMPQ
Sbjct: 66  DSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQ 125

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           R +VSW  +I +Y+  G   EA+ LF+ MLR    P + FT +++L +C         +Q
Sbjct: 126 RNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEP-NHFTFATILTSCYGSLGFETGRQ 184

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H  A+K   + ++FVG++LLD+YAK G I DA  VF  +PER+ V  +++++G+ Q  L
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            EEAL LFR+ Q+ G+  N  T +SV+ A +GLAAL  GKQVH+ + ++G  S +   +S
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 304

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHP 335
           L+DMY+KCG V  A  +F  + E+  + WN M+ G+S+H  + EV+ LF+ M++   + P
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 364

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           +  TY++VLS CSH  + + G   F  MV  +  + P++ HY C++D+LGRAG + EA+D
Sbjct: 365 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 424

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MPF  TA++WGSLL SCR + ++E+  I  ++L  +EP+NAGN+++LSN+YA+  +
Sbjct: 425 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 484

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WE++   R L+++  V KE  +SWVE+             HPR  E+ +K+++L  + K+
Sbjct: 485 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKE 544

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L+DV++ +K+++L+ HSEKLAL FGL+    G  IR++KNLRIC DCHSF
Sbjct: 545 DGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSF 604

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF SR+  R  I+RD NRFH+   G CSC D+W
Sbjct: 605 AKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 162/335 (48%), Gaps = 10/335 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC        G+  H+  I     +     + L++ Y+K G I  A  VF  +
Sbjct: 165 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 224

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +V+   II  Y   G ++EA+ LF  +  EG    S  T +SVL A +    +   
Sbjct: 225 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNS-VTYASVLTALSGLAALNHG 283

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   L++     V +  +L+D+Y+KCG +  A R+F+SMPER  ++W++M+ G+ ++
Sbjct: 284 KQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKH 343

Query: 215 ELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQV--HAVLCKTGFGSNM 271
            +  E L LF+  +    ++ +  T  +V+  C+       G ++  + V  K G   ++
Sbjct: 344 GMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDI 403

Query: 272 FAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV-MILFEKMQ 329
                +VD+  + G V +A+ F+          +W +++     H+  VE+ +I+ +K+ 
Sbjct: 404 GHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHS-DVEIGIIVGQKLL 462

Query: 330 QAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +  L P N   Y+ + +  +  G  E  ++  DLM
Sbjct: 463 E--LEPENAGNYVILSNLYASAGKWEDMRNIRDLM 495



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 100/183 (54%), Gaps = 4/183 (2%)

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           +EAL+   +  +LG E       S++  C    A+ +G++VH  + KT +  +++  + L
Sbjct: 47  KEALL---QMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRL 103

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + +Y KC C+ DA  +F  + ++NVV W  MIS +S+   + E + LF +M ++   PN 
Sbjct: 104 IVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 163

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+ ++L++C      E G+    + +K+ N   ++F  S ++D+  ++G I +A+ +  
Sbjct: 164 FTFATILTSCYGSLGFETGRQIHSIAIKR-NYESHMFVGSSLLDMYAKSGRICDAHGVFH 222

Query: 398 NMP 400
            +P
Sbjct: 223 CLP 225


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/569 (38%), Positives = 355/569 (62%), Gaps = 9/569 (1%)

Query: 40   LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            L +C    A   G+  H++++  G   D    N LI+ Y++CG I  AR +F++M ++ I
Sbjct: 453  LNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDI 512

Query: 100  VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            +SW  +IG    +G   EA+A+F +M + G  P +  T +S+L AC++   +   +++H 
Sbjct: 513  ISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKP-NRVTYTSILNACSSPAALDWGRRIHQ 571

Query: 160  FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
              ++A +  +  V   L+++Y+ CG + DA +VF+ M +R+ V +++M+ G+  + L +E
Sbjct: 572  QVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKE 631

Query: 220  ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            AL LF R Q  GL+ ++ T  +++ ACA   +L   K++H+++ K G+ S+    ++LV 
Sbjct: 632  ALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVS 691

Query: 280  MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
             YAKCG   DA  VF  + ++NV+ WN +I G ++H R  +V+ LFE+M+  G+ P+  T
Sbjct: 692  TYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVT 751

Query: 340  YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            ++S+LSACSH G++E+G+ YF  M +   + P + HY CM+D+LGRAG + E   LI  M
Sbjct: 752  FVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTM 811

Query: 400  PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
            PF A   +WG+LL +CR + N+ +AE AA+    ++PDNA  ++ LS++YAA   W+  A
Sbjct: 812  PFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAA 871

Query: 460  RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
            + RKL+    V KE  +SW+E+  K        R+HP   +IY++L+KL   MK  GY P
Sbjct: 872  KLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVP 931

Query: 512  ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
            +T   +HDV++  K+  + HHSE+LA+ +GL+   PG PIRI KNLR+C DCH+  KF +
Sbjct: 932  DTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFIT 991

Query: 572  RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +I  RE + RD+NRFHHF +G CSC D+W
Sbjct: 992  KIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 216/388 (55%), Gaps = 5/388 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H+ I+  G  +D      L+  Y+KCG     R+VF+++  R +++WNT+IG    
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G  +EA  ++  M REG  P ++ T   +L AC     +   +++H   +K     ++ 
Sbjct: 424 GGNWEEASEIYHQMQREGMMP-NKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  AL+ +YA+CG I DA  +F  M  ++ ++W++M+ G  ++ L  EAL +F+  Q  G
Sbjct: 483 VQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG 542

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L+ N+ T +S++ AC+  AAL  G+++H  + + G  ++   A++LV+MY+ CG V DA 
Sbjct: 543 LKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDAR 602

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + ++++V +N MI G++ H    E + LF+++Q+ GL P++ TYI++L+AC++ G
Sbjct: 603 QVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 662

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +E  K    L++K    L +    + ++    + G   +A  L+ +         W ++
Sbjct: 663 SLEWAKEIHSLVLKD-GYLSDTSLGNALVSTYAKCGSFSDAL-LVFDKMMKRNVISWNAI 720

Query: 412 LASCRNY-RNLELAEIAAK-QLFGMEPD 437
           +  C  + R  ++ ++  + ++ G++PD
Sbjct: 721 IGGCAQHGRGQDVLQLFERMKMEGIKPD 748



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 179/324 (55%), Gaps = 1/324 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    L SC    A   G+  H + +   L  D   +N ++N Y+KCG I  AR+VFD+
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + +VSW  IIG Y   G  + A  +F  M +EG  P +  T  +VL A +    +  
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVP-NRITYINVLNAFSGPAALKW 363

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H   L A  + ++ VGTAL+ +YAKCG   D  +VFE +  R+ + W++M+ G  +
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
              +EEA  ++ + Q  G+  N+ T   ++ AC    AL  G+++H+ + K GF  ++  
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYA+CG + DA  +F+ +  K+++ W  MI G ++     E + +F+ MQQAGL
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 334 HPNEQTYISVLSACSHIGMVEKGK 357
            PN  TY S+L+ACS    ++ G+
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGR 567



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 189/356 (53%), Gaps = 6/356 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM--PQR 97
           L+ C   +  V G+  H  II      D  T N LIN Y +CG I  AR+V++++   +R
Sbjct: 148 LKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTER 207

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQ 156
            + SWN ++  Y   G  +EA+ L   M + G       T   +L +C +     EC ++
Sbjct: 208 TVHSWNAMVVGYVQYGYIEEALKLLREMQQHG-LALGRATTMRLLSSCKSP-SALECGRE 265

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +HV A+KA +  +V V   +L++YAKCG I +A  VF+ M  ++ V+W+ ++ G+     
Sbjct: 266 IHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGH 325

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            E A  +F++ Q  G+  N+ T  +V+ A +G AAL  GK VH+ +   G  S++   ++
Sbjct: 326 SEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTA 385

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           LV MYAKCG   D   VF  +  ++++ WNTMI G +      E   ++ +MQ+ G+ PN
Sbjct: 386 LVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPN 445

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + TY+ +L+AC +   +  G+     +VK    + ++   + +I +  R G I +A
Sbjct: 446 KITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIKDA 500



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 137/255 (53%), Gaps = 10/255 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+   A   G+  H ++I  GL  D   +N L+N YS CG +  AR+VFD M
Sbjct: 549 TYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            QR IV++N +IG Y  +   +EA+ LF  +  EG  P  + T  ++L ACA    +   
Sbjct: 609 TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKP-DKVTYINMLNACANSGSLEWA 667

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H   LK     +  +G AL+  YAKCG  SDA  VF+ M +RN ++W++++ G  Q+
Sbjct: 668 KEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQH 727

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              ++ L LF R ++ G++ +  T  S++ AC+    L +G++    + +       F  
Sbjct: 728 GRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRD------FGI 781

Query: 275 SSLVDMYAKCGCVVD 289
           +  ++ Y   GC+VD
Sbjct: 782 TPTIEHY---GCMVD 793



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM--PE 198
           +L  C   +D+   +++H   ++     + +   AL+++Y +CG I +A +V+  +   E
Sbjct: 147 MLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTE 206

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           R   +W++MV G+VQ    EEAL L R  Q  GL   + T   ++ +C   +AL  G+++
Sbjct: 207 RTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREI 266

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H    K     ++  A+ +++MYAKCG + +A  VF  +E K+VV W  +I G++    S
Sbjct: 267 HVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHS 326

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
                +F+KMQQ G+ PN  TYI+VL+A S    ++ GK+
Sbjct: 327 EIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKT 366



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 6/224 (2%)

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           + A+ + +  Q  G   N      ++  C  +  L+ G++VH  + +     + +  ++L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 278 VDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           ++MY +CG + +A  V++ +   E+ V  WN M+ G+ ++    E + L  +MQQ GL  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
              T + +LS+C     +E G+    +   +  +L +V   +C++++  + G IHEA ++
Sbjct: 243 GRATTMRLLSSCKSPSALECGRE-IHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELA-EIAAK-QLFGMEPD 437
              M   +  S W  ++    +  + E+A EI  K Q  G+ P+
Sbjct: 302 FDKMETKSVVS-WTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/584 (41%), Positives = 359/584 (61%), Gaps = 17/584 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    ++SC+       GK  H + +  G  +D   S+ LI+ YSKCG +S AR +FDE
Sbjct: 83  STFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDE 142

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINML--------REGKTPYSEFTVSSVLCAC 145
           +P+R IV+W ++I  Y  N    EA+ +F   L         E  T      + SVL AC
Sbjct: 143 IPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSAC 202

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           +   +    + +H  A+K  +D+ + V   LLD YAKCG +S + +VF+ M E++ V+W+
Sbjct: 203 SRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWN 262

Query: 206 SMVAGFVQNELYEEALILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           SM+A + QN L  +A  +F    +  G +YN+ T+S+++ ACA   AL  G  +H  + K
Sbjct: 263 SMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIK 322

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            G+ +N+  A+S++DMY KCG    A   F G++EKNV  W  MI+G+  H  + E + +
Sbjct: 323 MGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDV 382

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M  AG+ PN  T+ISVL+ACSH G +E+G  +F+ M  ++NV P V HY CM+D+LG
Sbjct: 383 FYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLG 442

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG I EAY+LI +M       +WGSLLA+CR ++++ELAEI+A++LF ++P N G ++L
Sbjct: 443 RAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVL 502

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           L+NIYA   RW++V R R L++D  + K    S VE+KG+        + HP+  +IY  
Sbjct: 503 LANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKY 562

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           LE+L  ++++ GY P     LHDV++  K+ ++  HSEKLA+ FG+M   PG  I ++KN
Sbjct: 563 LEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKN 622

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+CGDCH+ +K  S+I  RE IVRD  RFHHF +G CSC D+W
Sbjct: 623 LRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 96/174 (55%), Gaps = 10/174 (5%)

Query: 187 SDASRVFESMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           ++ + +F    +R +V +W+S++A   +     E+L  F   + L ++ N+ T    I +
Sbjct: 32  TNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKS 91

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L  L  GKQ H      GF S++F +S+L+DMY+KCG + +A  +F  I  +N+V W
Sbjct: 92  CSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTW 151

Query: 306 NTMISGFSRHARSVEVMILFEKM---------QQAGLHPNEQTYISVLSACSHI 350
            ++I+G+ ++  + E +++F++          ++ G   +    ISVLSACS +
Sbjct: 152 TSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRV 205


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/571 (41%), Positives = 357/571 (62%), Gaps = 11/571 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C  +RA   G+  H  +I             LI  Y+KC  +  AR++FDEMPQ+ +
Sbjct: 97  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNV 156

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  +I +Y+  G   EA+ LF+ MLR    P + FT +++L +C         +Q+H 
Sbjct: 157 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEP-NHFTFATILTSCYGSLGFETGRQIHS 215

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+K   + ++FVG++LLD+YAK G I DA  VF  +PER+ V  +++++G+ Q  L EE
Sbjct: 216 IAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEE 275

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LFR+ Q+ G+  N  T +SV+ A +GLAAL  GKQVH+ + ++G  S +   +SL+D
Sbjct: 276 ALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLID 335

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ 338
           MY+KCG V  A  +F  + E+  + WN M+ G+S+H  + EV+ LF+ M++   + P+  
Sbjct: 336 MYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSI 395

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
           TY++VLS CSH  + + G   F  MV  +  + P++ HY C++D+LGRAG + EA+D I 
Sbjct: 396 TYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIK 455

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            MPF  TA++WGSLL SCR + ++E+  I  ++L  +EP+NAGN+++LSN+YA+  +WE+
Sbjct: 456 KMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWED 515

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           +   R L+++  V KE  +SWVE+             HPR  E+  K+++L  + K+ GY
Sbjct: 516 MRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGY 575

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+    L+DV++ +K+++L+ HSEKLAL FGL+    G  IR++KNLRIC DCHSF KF
Sbjct: 576 VPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKF 635

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            SR+  R  I+RD NRFH+   G CSC D+W
Sbjct: 636 VSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 152/278 (54%), Gaps = 10/278 (3%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
            ++L  C ++R + E +++H   +K     +V++ T L+ +Y KC  + DA  +F+ MP+
Sbjct: 94  DTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQ 153

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +N V+W++M++ + Q     EAL LF        E N FT ++++ +C G      G+Q+
Sbjct: 154 KNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 213

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H++  K  + S+MF  SSL+DMYAK G + DA+ VF  + E++VV    +ISG+++    
Sbjct: 214 HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLD 273

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-- 376
            E + LF ++Q  G++ N  TY SVL+A S +  +  GK      V  H +    + Y  
Sbjct: 274 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-----VHSHVLRSGQYSYVV 328

Query: 377 --SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             + +ID+  + G +  A  +  +MP + T   W ++L
Sbjct: 329 LLNSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAML 365



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 162/335 (48%), Gaps = 10/335 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC        G+  H+  I     +     + L++ Y+K G I  A  VF  +
Sbjct: 193 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 252

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +V+   II  Y   G ++EA+ LF  +  EG    S  T +SVL A +    +   
Sbjct: 253 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNS-VTYASVLTALSGLAALNHG 311

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   L++     V +  +L+D+Y+KCG +  A R+F+SMPER  ++W++M+ G+ ++
Sbjct: 312 KQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKH 371

Query: 215 ELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQV--HAVLCKTGFGSNM 271
            +  E L LF+  +    ++ +  T  +V+  C+       G ++  + V  K G   ++
Sbjct: 372 GMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDI 431

Query: 272 FAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV-MILFEKMQ 329
                +VD+  + G V +A+ F+          +W +++     H+  VE+ +I+ +K+ 
Sbjct: 432 GHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHS-DVEIGIIVGQKLL 490

Query: 330 QAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +  L P N   Y+ + +  +  G  E  ++  DLM
Sbjct: 491 E--LEPENAGNYVILSNLYASAGKWEDMRNIRDLM 523



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 100/183 (54%), Gaps = 4/183 (2%)

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           +EAL+   +  +LG E       +++  C    A+ +G++VH  + KT +  +++  + L
Sbjct: 75  KEALL---QMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRL 131

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + +Y KC C+ DA  +F  + +KNVV W  MIS +S+   + E + LF +M ++   PN 
Sbjct: 132 IVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 191

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+ ++L++C      E G+    + +K+ N   ++F  S ++D+  ++G I +A+ +  
Sbjct: 192 FTFATILTSCYGSLGFETGRQIHSIAIKR-NYESHMFVGSSLLDMYAKSGRICDAHGVFH 250

Query: 398 NMP 400
            +P
Sbjct: 251 CLP 253


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/574 (41%), Positives = 353/574 (61%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++C+   A   G+  H  +I    ++D      L++ Y+K   +  ARKVFD M
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++  N +I   +  GR  EA++LF  + +EG    +  T+++VL + A+       
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEG-LGVNRTTLAAVLKSTASLEAASTT 423

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A+K     +  V   L+D Y KC  +SDA+RVFE     + +  +SM+    Q 
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQC 483

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  E A+ LF      GLE + F +SS++ ACA L+A  QGKQVHA L K  F S+ FA 
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG 543

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV  YAKCG + DA   FS + E+ VV W+ MI G ++H      + LF +M   G++
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 603

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T  SVL AC+H G+V++ K YF+ M +   +     HYSCMID+LGRAG + +A +
Sbjct: 604 PNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAME 663

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+ +MPF A AS+WG+LL + R +++ EL ++AA++LF +EP+ +G H+LL+N YA+   
Sbjct: 664 LVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGM 723

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W EVA+ RKL++DS +KKE + SW+E+K        G ++HP   EIY+KL +L + M K
Sbjct: 724 WNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSK 783

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P  + DLHD++ S K+ LL HHSE+LA+ F L+   PG PIR+ KNLRIC DCH  
Sbjct: 784 AGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVA 843

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S+I  RE I+RD+NRFHHF +G+CSC D+W
Sbjct: 844 FKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 210/416 (50%), Gaps = 11/416 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + +C   R    G+  HA ++ MG + D  T+N L++ Y K G +  A  +F++MP   
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSD 267

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +VSWN +I     NG +  A+ L + M   G  P + FT+SS+L AC+        +Q+H
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP-NVFTLSSILKACSGAGAFDLGRQIH 326

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F +KA  D + ++G  L+D+YAK   + DA +VF+ M  R+ +  +++++G      ++
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL LF   +  GL  N+ T+++V+ + A L A    +QVHA+  K GF  +    + L+
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLI 446

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           D Y KC C+ DA  VF      +++   +MI+  S+       + LF +M + GL P+  
Sbjct: 447 DSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
              S+L+AC+ +   E+GK     ++K+   + + F  + ++    + G I +A     +
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 399 MPFDATAS---MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           +P     S   M G L       R LEL      +  G+ P    NH+ ++++  A
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDE--GINP----NHITMTSVLCA 615



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 182/335 (54%), Gaps = 13/335 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS--NILINFYSKCGLISGARKVFD 92
           T+   L   A  +A + G   HA ++  G    +L S  N LI+FYSKC     AR+VFD
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSG----SLASFRNHLISFYSKCRRPCCARRVFD 61

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDV 151
           E+P  C VSW++++ +Y+ NG  + A+  F  M  EG    +EF +  VL C   A+   
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKCVPDARLGA 120

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF-ESMPERNEVTWSSMVAG 210
               Q+H  A+      +VFV  AL+ +Y   G + DA RVF E+  ERN V+W+ +++ 
Sbjct: 121 ----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V+N+   +A+ +F      G++  +F  S V+ AC G   +  G+QVHA++ + G+  +
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F A++LVDMY K G V  A  +F  + + +VV WN +ISG   +      + L  +M+ 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +GL PN  T  S+L ACS  G  + G+     M+K
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 170/315 (53%), Gaps = 2/315 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM-PQRCIVSWNTIIGSYT 110
           G   HA  +  G  +D   +N L+  Y   G +  AR+VF+E   +R  VSWN ++ +Y 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +  +A+ +F  M+  G  P +EF  S V+ AC   R++   +Q+H   ++   D++V
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQP-TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F   AL+D+Y K G +  AS +FE MP+ + V+W+++++G V N     A+ L  + +  
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  N FT+SS++ AC+G  A   G+Q+H  + K    S+ +    LVDMYAK   + DA
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +  ++++L N +ISG S   R  E + LF ++++ GL  N  T  +VL + + +
Sbjct: 358 RKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417

Query: 351 GMVEKGKSYFDLMVK 365
                 +    L VK
Sbjct: 418 EAASTTRQVHALAVK 432



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 150/291 (51%), Gaps = 6/291 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L+S A   A    +  HA  + +G   D    N LI+ Y KC  +S A +VF+E
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                I++  ++I + +     + A+ LF+ MLR+G  P   F +SS+L ACA+     +
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP-DPFVLSSLLNACASLSAYEQ 523

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     + F G AL+  YAKCG I DA   F S+PER  V+WS+M+ G  Q
Sbjct: 524 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQ 583

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   + AL LF R    G+  N  T++SV+CAC   A L+   + +    K  FG +   
Sbjct: 584 HGHGKRALELFGRMVDEGINPNHITMTSVLCAC-NHAGLVDEAKRYFNSMKEMFGIDRTE 642

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
              S ++D+  + G + DA  + + +  + N  +W  ++ G SR  +  E+
Sbjct: 643 EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALL-GASRVHKDPEL 692


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/574 (41%), Positives = 353/574 (61%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++C+   A   G+  H  +I    ++D      L++ Y+K   +  ARKVFD M
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++  N +I   +  GR  EA++LF  + +EG    +  T+++VL + A+       
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEG-LGVNRTTLAAVLKSTASLEAASTT 423

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A+K     +  V   L+D Y KC  +SDA+RVFE     + +  +SM+    Q 
Sbjct: 424 RQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQC 483

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  E A+ LF      GLE + F +SS++ ACA L+A  QGKQVHA L K  F S+ FA 
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG 543

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV  YAKCG + DA   FS + E+ VV W+ MI G ++H      + LF +M   G++
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 603

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T  SVL AC+H G+V++ K YF+ M +   +     HYSCMID+LGRAG + +A +
Sbjct: 604 PNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAME 663

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+ +MPF A AS+WG+LL + R +++ EL ++AA++LF +EP+ +G H+LL+N YA+   
Sbjct: 664 LVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGM 723

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W EVA+ RKL++DS +KKE + SW+E+K        G ++HP   EIY+KL +L + M K
Sbjct: 724 WNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSK 783

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P  + DLHD++ S K+ LL HHSE+LA+ F L+   PG PIR+ KNLRIC DCH  
Sbjct: 784 AGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVA 843

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S+I  RE I+RD+NRFHHF +G+CSC D+W
Sbjct: 844 FKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 210/416 (50%), Gaps = 11/416 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + +C   R    G+  HA ++ MG + D  T+N L++ Y K G +  A  +F++MP   
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSD 267

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +VSWN +I     NG +  A+ L + M   G  P + FT+SS+L AC+        +Q+H
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP-NVFTLSSILKACSGAGAFDLGRQIH 326

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F +KA  D + ++G  L+D+YAK   + DA +VF+ M  R+ +  +++++G      ++
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL LF   +  GL  N+ T+++V+ + A L A    +QVHA+  K GF  +    + L+
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLI 446

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           D Y KC C+ DA  VF      +++   +MI+  S+       + LF +M + GL P+  
Sbjct: 447 DSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
              S+L+AC+ +   E+GK     ++K+   + + F  + ++    + G I +A     +
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQ-FMSDAFAGNALVYTYAKCGSIEDAELAFSS 565

Query: 399 MPFDATAS---MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           +P     S   M G L       R LEL      +  G+ P    NH+ ++++  A
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDE--GINP----NHITMTSVLCA 615



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 181/335 (54%), Gaps = 13/335 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS--NILINFYSKCGLISGARKVFD 92
           T+   L   A  +A + G   HA ++  G    +L S  N LI+FYSKC     AR+ FD
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSG----SLASFRNHLISFYSKCRRPCCARRFFD 61

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDV 151
           E+P  C VSW++++ +Y+ NG  + A+  F  M  EG    +EF +  VL C   A+   
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG-VCCNEFALPVVLKCVPDARLGA 120

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF-ESMPERNEVTWSSMVAG 210
               Q+H  A+      +VFV  AL+ +Y   G + DA RVF E+  ERN V+W+ +++ 
Sbjct: 121 ----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V+N+   +A+ +F      G++  +F  S V+ AC G   +  G+QVHA++ + G+  +
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F A++LVDMY K G V  A  +F  + + +VV WN +ISG   +      + L  +M+ 
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +GL PN  T  S+L ACS  G  + G+     M+K
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK 331



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 170/315 (53%), Gaps = 2/315 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM-PQRCIVSWNTIIGSYT 110
           G   HA  +  G  +D   +N L+  Y   G +  AR+VF+E   +R  VSWN ++ +Y 
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYV 178

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +  +A+ +F  M+  G  P +EF  S V+ AC   R++   +Q+H   ++   D++V
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQP-TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F   AL+D+Y K G +  AS +FE MP+ + V+W+++++G V N     A+ L  + +  
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  N FT+SS++ AC+G  A   G+Q+H  + K    S+ +    LVDMYAK   + DA
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +  ++++L N +ISG S   R  E + LF ++++ GL  N  T  +VL + + +
Sbjct: 358 RKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417

Query: 351 GMVEKGKSYFDLMVK 365
                 +    L VK
Sbjct: 418 EAASTTRQVHALAVK 432



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 150/291 (51%), Gaps = 6/291 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L+S A   A    +  HA  + +G   D    N LI+ Y KC  +S A +VF+E
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                I++  ++I + +     + A+ LF+ MLR+G  P   F +SS+L ACA+     +
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP-DPFVLSSLLNACASLSAYEQ 523

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     + F G AL+  YAKCG I DA   F S+PER  V+WS+M+ G  Q
Sbjct: 524 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQ 583

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   + AL LF R    G+  N  T++SV+CAC   A L+   + +    K  FG +   
Sbjct: 584 HGHGKRALELFGRMVDEGINPNHITMTSVLCAC-NHAGLVDEAKRYFNSMKEMFGIDRTE 642

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
              S ++D+  + G + DA  + + +  + N  +W  ++ G SR  +  E+
Sbjct: 643 EHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALL-GASRVHKDPEL 692


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 359/574 (62%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L++CAR+     G   H+ ++  G ++D      L++ Y KC     A KVFD++
Sbjct: 116 TIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDI 175

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P + +VSW  II  Y ++G  +EA+  F  +L  G  P S F++  VL ACA   D    
Sbjct: 176 PDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDS-FSLVKVLAACARLGDCTSG 234

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +   + M RNVFV T+LLD+Y KCG +  A+ +F +MPE++ V+WS+M+ G+  N
Sbjct: 235 EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFN 294

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L ++AL LF + Q   L+ + +T+  V+ ACA L AL  G    +++ +  F SN    
Sbjct: 295 GLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG 354

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMY+KCG V  A+ +F+ +++K+ V+WN M+ G S +  +  V  LF  +++ G+ 
Sbjct: 355 TALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIR 414

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+E T+I +L  C+H G V +G+ +F+ M +  ++ P++ HY CM+D+LGRAGL++EA+ 
Sbjct: 415 PDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQ 474

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI NMP    A +WG+LL  C+ +++  LAE   K+L  +EP N+GN++ LSNIY+ N R
Sbjct: 475 LINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHR 534

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WEE  + R  +++ +++K ++ SW+EI         G ++H    +IY+KL++L  E+K 
Sbjct: 535 WEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKA 594

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +G+ P TE  L D+E+  K+  L +HSEKLA+ FGL+   P   IR++KNLR+CGDCH  
Sbjct: 595 VGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDA 654

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  RE I+RD NRFH F +GSCSC D+W
Sbjct: 655 IKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 198/351 (56%), Gaps = 10/351 (2%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA----RKVFDEMPQRCIVSWNTIIGS 108
           K  HA+++ + L+ D    N L+N    C L  G+    + VF ++ +  I  WNT+I  
Sbjct: 33  KHIHARLLRLHLDQD----NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
             +     +A+ L+ +M   G  P + FT+  VL ACA K DV    ++H   +KA  D 
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLP-NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           +VFV T+LL +Y KC    DA +VF+ +P++N V+W++++ G++ +  + EA+  F++  
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
            +GL+ + F++  V+ ACA L     G+ +   +  +G G N+F A+SL+DMY KCG + 
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  +FS + EK++V W+TMI G++ +    + + LF +MQ   L P+  T + VLSAC+
Sbjct: 268 RANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            +G ++ G     LM  ++  L N    + +ID+  + G + +A+++   M
Sbjct: 328 TLGALDLGIWASSLM-DRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM 377



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 143/286 (50%), Gaps = 5/286 (1%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + K +H   L+  +D++ ++   +L      G  + +  VF  + E N   W++M+ G V
Sbjct: 31  QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLV 90

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
             + +++A+ L+   +  G   N FTI  V+ ACA    +  G ++H++L K G+  ++F
Sbjct: 91  SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +SL+ +Y KC    DA  VF  I +KNVV W  +I+G+       E +  F+K+ + G
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           L P+  + + VL+AC+ +G    G+ + D  +    +  NVF  + ++D+  + G +  A
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGE-WIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA 269

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
             +   MP     S W +++   + Y    L + A    F M+ +N
Sbjct: 270 NLIFSAMPEKDIVS-WSTMI---QGYAFNGLPQQALDLFFQMQSEN 311



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           GL    Q K +HA L +     + +  + ++      G    +  VFS ++E N+ LWNT
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNT 84

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI G        + + L+  M+  G  PN  T   VL AC+    V  G     L+VK  
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA- 143

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
               +VF  + ++ +  +     +A  +  ++P D     W +++    +  +   A  A
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITGYISSGHFREAIGA 202

Query: 428 AKQLF--GMEPDN 438
            K+L   G++PD+
Sbjct: 203 FKKLLEMGLKPDS 215


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/609 (39%), Positives = 361/609 (59%), Gaps = 40/609 (6%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG-------- 82
           +E S     LQSC  E +   GK  H+ II  G ++D   SN L+N YSKCG        
Sbjct: 50  SEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITL 109

Query: 83  --------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119
                         LI+G         ARK+FDEMP+R + +WN ++         +E +
Sbjct: 110 FGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGL 169

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            LF  M   G  P  EF + SVL  CA  R +   +Q+H +  K   + N+ V ++L  +
Sbjct: 170 GLFSRMNELGFLP-DEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHM 228

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y KCG + +  R+  +MP +N V W++++AG  QN   EE L  +   ++ G   ++ T 
Sbjct: 229 YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            SVI +C+ LA L QG+Q+HA + K G    +   SSL+ MY++CGC+  +  VF   E 
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECEN 348

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
            +VV W++MI+ +  H R VE + LF +M+Q  L  N+ T++S+L ACSH G+ EKG  +
Sbjct: 349 GDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKF 408

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FDLMV+++ V P + HY+CM+D+LGR G + EA  LI +MP  A    W +LL++C+ ++
Sbjct: 409 FDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHK 468

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
             E+A   ++++F ++P +   ++LLSNI+A+++RW++V+  RK +RD ++KKE   SW+
Sbjct: 469 KTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWL 528

Query: 480 EIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E+K        G ++HP+  EI S L +L  EMKK GY P+ +  LHD++   K+  L+H
Sbjct: 529 EVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVH 588

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+ F L+    G PIR++KNLR+C DCH  +K+ S I+ RE IVRD +RFHHF N
Sbjct: 589 HSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKN 648

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 649 GRCSCGDYW 657


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 358/574 (62%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L++CAR+     G   H+ ++  G ++D      L++ Y KC     A KVFD++
Sbjct: 116 TIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDI 175

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P + +VSW  II  Y ++G  +EA+  F  +L  G  P S F++  VL ACA   D    
Sbjct: 176 PDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDS-FSLVKVLAACARLGDCTSG 234

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +   + M RNVFV T+LLD+Y KCG +  A+ +F +MPE++ V+WS+M+ G+  N
Sbjct: 235 EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFN 294

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L ++AL LF + Q   L+ + +T+  V+ ACA L AL  G    +++ +  F SN    
Sbjct: 295 GLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG 354

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMY+KCG V  A+ +F+ ++ K+ V+WN M+ G S +  +  V  LF  +++ G+ 
Sbjct: 355 TALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIR 414

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+E T+I +L  C+H G V +G+ +F+ M +  ++ P++ HY CM+D+LGRAGL++EA+ 
Sbjct: 415 PDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQ 474

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI NMP    A +WG+LL  C+ +++  LAE   K+L  +EP N+GN++ LSNIY+ N R
Sbjct: 475 LINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHR 534

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WEE  + R  +++ +++K ++ SW+EI         G ++H    +IY+KL++L  E+K 
Sbjct: 535 WEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKA 594

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +G+ P TE  L D+E+  K+  L +HSEKLA+ FGL+   P   IR++KNLR+CGDCH  
Sbjct: 595 VGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDA 654

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  RE I+RD NRFH F +GSCSC D+W
Sbjct: 655 IKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 198/351 (56%), Gaps = 10/351 (2%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA----RKVFDEMPQRCIVSWNTIIGS 108
           K  HA+++ + L+ D    N L+N    C L  G+    + VF ++ +  I  WNT+I  
Sbjct: 33  KHIHARLLRLHLDQD----NYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
             +     +A+ L+ +M   G  P + FT+  VL ACA K DV    ++H   +KA  D 
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLP-NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           +VFV T+LL +Y KC    DA +VF+ +P++N V+W++++ G++ +  + EA+  F++  
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
            +GL+ + F++  V+ ACA L     G+ +   +  +G G N+F A+SL+DMY KCG + 
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  +FS + EK++V W+TMI G++ +    + + LF +MQ   L P+  T + VLSAC+
Sbjct: 268 RANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            +G ++ G     LM  ++  L N    + +ID+  + G + +A+++   M
Sbjct: 328 TLGALDLGIWASSLM-DRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM 377



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 143/286 (50%), Gaps = 5/286 (1%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + K +H   L+  +D++ ++   +L      G  + +  VF  + E N   W++M+ G V
Sbjct: 31  QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLV 90

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
             + +++A+ L+   +  G   N FTI  V+ ACA    +  G ++H++L K G+  ++F
Sbjct: 91  SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +SL+ +Y KC    DA  VF  I +KNVV W  +I+G+       E +  F+K+ + G
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           L P+  + + VL+AC+ +G    G+ + D  +    +  NVF  + ++D+  + G +  A
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGE-WIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA 269

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
             +   MP     S W +++   + Y    L + A    F M+ +N
Sbjct: 270 NLIFSAMPEKDIVS-WSTMI---QGYAFNGLPQQALDLFFQMQSEN 311



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           GL    Q K +HA L +     + +  + ++      G    +  VFS ++E N+ LWNT
Sbjct: 25  GLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNT 84

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI G        + + L+  M+  G  PN  T   VL AC+    V  G     L+VK  
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA- 143

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
               +VF  + ++ +  +     +A  +  ++P D     W +++    +  +   A  A
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITGYISSGHFREAIGA 202

Query: 428 AKQLF--GMEPDN 438
            K+L   G++PD+
Sbjct: 203 FKKLLEMGLKPDS 215


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/569 (41%), Positives = 350/569 (61%), Gaps = 10/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ C ++  P RGK  H +I+  G   D    NIL+N Y K   +  A K+FDEMP+R  
Sbjct: 45  LQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNT 104

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +S+ T+I  Y  + R  EA+ LF+ + RE     ++FT +SVL ACA    +    Q+H 
Sbjct: 105 ISFVTLIQGYAESVRFLEAIELFVRLHRE--VLPNQFTFASVLQACATMEGLNLGNQIHC 162

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +K  +  +VFV  AL+DVYAKCG + ++  +F   P RN+VTW++++ G VQ    E+
Sbjct: 163 HVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEK 222

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF       ++  + T SS + ACA LAAL  G Q+H++  KT F  ++   ++L+D
Sbjct: 223 ALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALID 282

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAKCG + DA  VF  + +++ V WN MISG+S H    E + +F+KMQ+  + P++ T
Sbjct: 283 MYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLT 342

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++ VLSAC++ G++++G++YF  M++ H + P + HY+CM+ +LGR G + +A  LI  +
Sbjct: 343 FVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEI 402

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           PF  +  +W +LL +C  + ++EL  I+A+++  MEP +   H+LLSN+YA  +RW+ VA
Sbjct: 403 PFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVA 462

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
             RK ++   VKKE   SW+E +        G  +HP +  I   LE L  + KK GY P
Sbjct: 463 SVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIP 522

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
                L DVED  K+ LL  HSE+LAL+FG++    G PIRIMKNLRIC DCH+ +K  S
Sbjct: 523 NYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCIS 582

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++  RE +VRD+NRFHHF  G CSC D+W
Sbjct: 583 KVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + LQ+CA       G   H  +I +GL++D   SN L++ Y+KCG +  + ++F E 
Sbjct: 140 TFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAES 199

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R  V+WNT+I  +   G  ++A+ LF+NML E +   +E T SS L ACA+   +   
Sbjct: 200 PHRNDVTWNTVIVGHVQLGDGEKALRLFLNML-EYRVQATEVTYSSALRACASLAALEPG 258

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H   +K   D+++ V  AL+D+YAKCG I DA  VF+ M +++EV+W++M++G+  +
Sbjct: 259 LQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMH 318

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
            L  EAL +F + Q   ++ ++ T   V+ ACA    L QG+
Sbjct: 319 GLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQ 360



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 150/288 (52%), Gaps = 6/288 (2%)

Query: 129 GKTPYSEFT---VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           G    SEF     ++ L  C  K +    K LH   LK     ++F    LL++Y K   
Sbjct: 29  GHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDF 88

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + DAS++F+ MPERN +++ +++ G+ ++  + EA+ LF R     L  NQFT +SV+ A
Sbjct: 89  LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP-NQFTFASVLQA 147

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA +  L  G Q+H  + K G  S++F +++L+D+YAKCG + ++  +F+    +N V W
Sbjct: 148 CATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTW 207

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NT+I G  +     + + LF  M +  +   E TY S L AC+ +  +E G     L VK
Sbjct: 208 NTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVK 267

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
                 ++   + +ID+  + G I +A  L+ ++        W ++++
Sbjct: 268 T-TFDKDIVVTNALIDMYAKCGSIKDAR-LVFDLMNKQDEVSWNAMIS 313


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/615 (39%), Positives = 361/615 (58%), Gaps = 47/615 (7%)

Query: 27  NANATELSTLQ--ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           N N   LST+   A+ Q C        G   H  ++  G  +     + L++ YSK GL+
Sbjct: 139 NLNRIALSTMLILASKQGCVH-----LGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLV 193

Query: 85  SGARKVFDEMPQRCIV-------------------------------SWNTIIGSYTTNG 113
             AR+ FDEMP++ +V                               SW  +I  +T NG
Sbjct: 194 FCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNG 253

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
            ++EA+ LF  M R       ++T  SVL AC     + E KQ+H + ++     N+FVG
Sbjct: 254 LDREAIDLFREM-RLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVG 312

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           +AL+D+Y KC  I  A  VF  M  +N V+W++M+ G+ QN   EEA+ +F   Q  G+E
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            + FT+ SVI +CA LA+L +G Q H     +G  S +  +++LV +Y KCG + D++ +
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           FS +   + V W  ++SG+++  ++ E + LFE M   G  P++ T+I VLSACS  G+V
Sbjct: 433 FSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLV 492

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +KG   F+ M+K+H ++P   HY+CMID+  RAG + EA   I  MPF   A  W SLL+
Sbjct: 493 QKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
           SCR +RN+E+ + AA+ L  +EP N  +++LLS+IYAA  +WEEVA  RK +RD  ++KE
Sbjct: 553 SCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKE 612

Query: 474 KSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
              SW++ K +        +++P   +IYS+LEKL  +M + GY P+    LHDV+DS K
Sbjct: 613 PGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEK 672

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
            ++L HHSEKLA+ FGL+ + PG+PIR++KNLR+CGDCH+  K+ S+I  RE +VRD  R
Sbjct: 673 IKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAAR 732

Query: 586 FHHFTNGSCSCWDFW 600
           FH F +G CSC DFW
Sbjct: 733 FHLFKDGRCSCGDFW 747



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 204/399 (51%), Gaps = 35/399 (8%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N L++ YSK   +    +VF  MP R +VSWN++I +Y   G   ++V  +  ML  G  
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             +   +S++L   + +  V    Q+H   +K      VFVG+ L+D+Y+K GL+  A +
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 192 VFESMPERN-------------------------------EVTWSSMVAGFVQNELYEEA 220
            F+ MPE+N                                ++W++M+AGF QN L  EA
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           + LFR  ++  LE +Q+T  SV+ AC G+ AL +GKQVHA + +T +  N+F  S+LVDM
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDM 318

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y KC  +  A  VF  +  KNVV W  M+ G+ ++  S E + +F  MQ  G+ P++ T 
Sbjct: 319 YCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTL 378

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            SV+S+C+++  +E+G + F        ++  +   + ++ + G+ G I +++ L   M 
Sbjct: 379 GSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMS 437

Query: 401 FDATASMWGSLLASCRNY--RNLELAEIAAKQLFGMEPD 437
           +    S W +L++    +   N  L    +    G +PD
Sbjct: 438 YVDEVS-WTALVSGYAQFGKANETLRLFESMLAHGFKPD 475



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 153/362 (42%), Gaps = 73/362 (20%)

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           C   +   + K++H   +KA  +  +F+   L+  YAK   I+ A RVF+ MP+RN  +W
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ---------- 254
           +++++ + +     E   +F          +  + +S+I A AG   L+Q          
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPT----RDMVSWNSLISAYAGRGFLLQSVKAYNLMLY 134

Query: 255 --------------------------GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
                                     G QVH  + K GF S +F  S LVDMY+K G V 
Sbjct: 135 NGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVF 194

Query: 289 DAYFVFSGIEEKNVVLWNT-------------------------------MISGFSRHAR 317
            A   F  + EKNVV++NT                               MI+GF+++  
Sbjct: 195 CARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             E + LF +M+   L  ++ T+ SVL+AC  +  +++GK     +++  +   N+F  S
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-DYQDNIFVGS 313

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-QLFGMEP 436
            ++D+  +   I  A  +   M      S    L+   +N  + E  +I    Q  G+EP
Sbjct: 314 ALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEP 373

Query: 437 DN 438
           D+
Sbjct: 374 DD 375


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/613 (38%), Positives = 376/613 (61%), Gaps = 46/613 (7%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           ++ +S   + L   A+   PV  K+   +   M L + T + N +I+ + + GL+  A+ 
Sbjct: 177 SSYISVANSLLNMYAKSGDPVTAKIVFDR---MKLKS-TSSWNTMISSHMQSGLVDLAQV 232

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
            F++M +R +VSWN +I  Y  +G ++EA+ +F  ML +  +   +FT++S L ACA   
Sbjct: 233 QFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLE 292

Query: 150 DVFECKQLHVFALKAAMDR---------------------------------NVFVGTAL 176
           ++   KQ+H   ++   D                                  +V   TAL
Sbjct: 293 NLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTAL 352

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           LD Y K G I+ A R+F+S+  R+ V W++M+ G+VQN   ++A+ LFR     G + N 
Sbjct: 353 LDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNN 412

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           +T+++++   + LA+L  G+Q+HA   ++G  S++  +++L+ MYAK G + DA +VF+ 
Sbjct: 413 YTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNL 472

Query: 297 IE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           I  +++ + W +MI   ++H    E + LFE+M + G+ P+  TY+ VLSAC+H+G+VE+
Sbjct: 473 IHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQ 532

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+SY++LM   H ++P   HY+CMID+ GRAGL+ EA+  I NMP +     WGSLLASC
Sbjct: 533 GRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASC 592

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           + ++N+ELAE+AA++L  +EP+N+G +  L+N+Y+A  +WE  A  RK ++D  VKK++ 
Sbjct: 593 KVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQG 652

Query: 476 KSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            SWV+IK K +        HP+   IY  + K+ +E+KK+G+ P+TE  LHD+E+  K++
Sbjct: 653 FSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQ 712

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           +L HHSEKLA+ FGL+C      +RIMKNLR+C DCHS +KF S++ GRE IVRD  RFH
Sbjct: 713 ILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFH 772

Query: 588 HFTNGSCSCWDFW 600
           HF NG CSC D+W
Sbjct: 773 HFKNGLCSCRDYW 785



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 222/496 (44%), Gaps = 98/496 (19%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ   + + P  GK  HA+II  GL+      N L+NFY+K G I  A +VFDEMP + +
Sbjct: 20  LQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSV 79

Query: 100 VSWNTIIGSYTTNGREQEAVALF---------------------------INMLRE---G 129
            SWN I+  Y   GR +EA  +F                           I M RE    
Sbjct: 80  FSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSD 139

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK------- 182
             P ++FT+++VL +CAA   +   +++H F +K  +   + V  +LL++YAK       
Sbjct: 140 DVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTA 199

Query: 183 ------------------------CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                                    GL+  A   FE M ER+ V+W++M++G+ Q+    
Sbjct: 200 KIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDR 259

Query: 219 EALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           EAL +F +  +    + ++FT++S + ACA L  L  GKQ+HA + +T F +     ++L
Sbjct: 260 EALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNAL 319

Query: 278 VDMYAKCGCV-----------------------VDAYF----------VFSGIEEKNVVL 304
           + MY+K G V                       +D Y           +F  +  ++VV 
Sbjct: 320 ISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVA 379

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W  MI G+ ++  + + M LF  M + G  PN  T  ++LS  S +  ++ G+       
Sbjct: 380 WTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASAT 439

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           +  N   +V   + +I +  ++G I++A  +   + +      W S++ +   +   E A
Sbjct: 440 RSGNA-SSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEA 498

Query: 425 EIAAKQLF--GMEPDN 438
               +++   G++PD+
Sbjct: 499 LTLFERMLENGIKPDH 514



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 136/296 (45%), Gaps = 68/296 (22%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           +L     PY+ F   S+       +D F  K +H   +KA +   VF+   L++ YAK G
Sbjct: 8   ILTSPSDPYTSFLQRSLKF-----KDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTG 62

Query: 185 LISDASRVF-------------------------------ESMPERNEVTWSSMVAGFVQ 213
            I DA RVF                               E MPE + V+W++M+ G+ Q
Sbjct: 63  FIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQ 122

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
              +E A+ +FR      +   QFT+++V+ +CA +  L  G++VH+ + K G  S +  
Sbjct: 123 MGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISV 182

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-------------------------------EKNV 302
           A+SL++MYAK G  V A  VF  ++                               E++V
Sbjct: 183 ANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDV 242

Query: 303 VLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           V WN MISG+++H    E + +F KM   +   P++ T  S LSAC+++  ++ GK
Sbjct: 243 VSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGK 298


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/570 (42%), Positives = 354/570 (62%), Gaps = 12/570 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L S AR R+ V+G   H  I+  GL+   L +N LINFYSK  L   +R+ F++ PQ+  
Sbjct: 22  LLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSA 81

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLH 158
            +W++II  +  N     ++     M+     P      S+   C   ++ D+   K +H
Sbjct: 82  TTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDI--GKSVH 139

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             ++K   D +VFVG++L+D+YAKCG I  A ++F+ MP RN VTWS M+ G+ Q    E
Sbjct: 140 CLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENE 199

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL LF+ A    L  N ++ S+VI  CA    L  G+Q+  +  K+ F S+ F  SSLV
Sbjct: 200 EALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLV 259

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            +Y+KCG +  AY VF  +  +N+ +WN M+   ++H+ + +V+ LF++M+ +G+ PN  
Sbjct: 260 SLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFI 319

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+++VL+ACSH G+V++GK YFDLM K+  + P   HY+ ++D+LGRAG + EA +++ N
Sbjct: 320 TFLNVLNACSHAGLVDEGKYYFDLM-KESRIEPTDKHYASLVDMLGRAGKLEEALEIVTN 378

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP D T S+WG+LL SC  ++N ELA  AA ++F + P ++G H+ LSN YAA+ R+E+ 
Sbjct: 379 MPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDA 438

Query: 459 ARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYK 510
           A+ARKL+RD   KKE   SWVE +        G+R H R  EIY KL +L EEM+K GY 
Sbjct: 439 AKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYV 498

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
            +T + L +V+   K + + +HSE+LA+ FGL+      PIR+MKNLR+CGDCH+ +KF 
Sbjct: 499 ADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFM 558

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S    R  IVRD NRFH F +G CSC D+W
Sbjct: 559 SICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 162/302 (53%), Gaps = 4/302 (1%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +  +L + A  R + +  QLH + +K+ +     V   L++ Y+K  L  D+ R FE  P
Sbjct: 18  ICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           +++  TWSS+++ F QNEL   +L   R+     L  +   + S   +C  L+    GK 
Sbjct: 78  QKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKS 137

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH +  KTG+ +++F  SSLVDMYAKCG +V A  +F  +  +NVV W+ M+ G+++   
Sbjct: 138 VHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGE 197

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           + E + LF++     L  N+ ++ +V+S C++  ++E G+    L +K  +   + F  S
Sbjct: 198 NEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKS-SFDSSSFVGS 256

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE-LAEIAAK-QLFGME 435
            ++ +  + G +  AY +   +P      +W ++L +C  + + + + E+  + +L GM+
Sbjct: 257 SLVSLYSKCGDLEGAYQVFDEVPM-RNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMK 315

Query: 436 PD 437
           P+
Sbjct: 316 PN 317



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 131/317 (41%), Gaps = 39/317 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +    +  CA       G+      I    ++ +   + L++ YSKCG + GA +VFDE+
Sbjct: 219 SFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEV 278

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +  WN ++ +   +   Q+ + LF  M   G  P +  T  +VL AC+    V E 
Sbjct: 279 PMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKP-NFITFLNVLNACSHAGLVDEG 337

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
           K       ++ ++       +L+D+  + G + +A  +  +MP +  E  W +++     
Sbjct: 338 KYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTI 397

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           ++  E A     +   LG       +SS                +H  L      SN +A
Sbjct: 398 HKNTELAAFAADKVFELG------PVSS---------------GMHISL------SNAYA 430

Query: 274 ASSLVDMYAKCGCVV-----DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           A    +  AK   ++           S +EE+N V  +T  +G  RH RS E+   +EK+
Sbjct: 431 ADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKV--HTFAAGERRHERSKEI---YEKL 485

Query: 329 QQAGLHPNEQTYISVLS 345
            + G    +  Y++  S
Sbjct: 486 AELGEEMEKAGYVADTS 502



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 3/199 (1%)

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
           YNQ  I  ++ + A   ++++G Q+H  + K+G       A++L++ Y+K     D+   
Sbjct: 15  YNQ--ICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRA 72

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F    +K+   W+++IS F+++      +    KM    L P++    S   +C  +   
Sbjct: 73  FEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRC 132

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           + GKS   L +K      +VF  S ++D+  + G I  A  +   MP     +  G +  
Sbjct: 133 DIGKSVHCLSMKT-GYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYG 191

Query: 414 SCRNYRNLELAEIAAKQLF 432
             +   N E   +  + LF
Sbjct: 192 YAQMGENEEALWLFKEALF 210


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/537 (44%), Positives = 342/537 (63%), Gaps = 14/537 (2%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           NILIN Y K GL+  A+ VFD+MP R +VSW T+I +Y+      +A+   + MLREG  
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P + FT SSVL AC     +F  +QLH   +K  +D +VFV +AL+DVY++ G + +A R
Sbjct: 64  P-NMFTYSSVLRACDG---LFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+ M   + V WSS++AGF QN   +EAL LF+R +  G    Q T++SV+ AC GLA 
Sbjct: 120 VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+QVH  + K  +  ++   ++L+DMY KCG + DA  VF  + EK+V+ W+TMI+G
Sbjct: 180 LELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG 237

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            +++  S E + LFE M+  G+ PN  T + VL ACSH G+VE+G  YF  M +   + P
Sbjct: 238 LAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDP 297

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
              HY CMID+LGRAG + EA DLI  M  +  A  W +LL +CR +RN+++A  AAKQ+
Sbjct: 298 GREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQI 357

Query: 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------G 483
             ++P +AG ++LLSNIYA  +RW +VA  R+ + +  +KKE   SW+E+         G
Sbjct: 358 LRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILG 417

Query: 484 KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM 543
            R+HP+I EI  +L +L+ ++  +GY P+T   L D+E  + Q+ L +HSEKLA+ FGLM
Sbjct: 418 DRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLM 477

Query: 544 CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            L  G  IRI KNLRICGDCH F K  +++  R  ++RD  R+HHF +G CSC DFW
Sbjct: 478 SLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 156/292 (53%), Gaps = 7/292 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  II +GL++D    + LI+ YS+ G +  A +VFDEM    +V W++II  +  N   
Sbjct: 86  HCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDG 145

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            EA+ LF  M R G     + T++SVL AC     +   +Q+HV  LK   D+++ +  A
Sbjct: 146 DEALRLFKRMKRAGFLA-QQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNA 202

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD+Y KCG + DA+ VF  M E++ ++WS+M+AG  QN   +EAL LF   +VLG++ N
Sbjct: 203 LLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPN 262

Query: 236 QFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
             TI  V+ AC+    + +G    H++    G          ++D+  + G + +A  + 
Sbjct: 263 YVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLI 322

Query: 295 SGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
           + +E E + V W  +++    H R+V+V I   K Q   L P +     +LS
Sbjct: 323 NEMECEPDAVTWRALLNACRVH-RNVDVAIHAAK-QILRLDPQDAGTYVLLS 372



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 153/271 (56%), Gaps = 13/271 (4%)

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F+   L+++Y K GL+ DA  VF+ MP+RN V+W++M++ +   +L ++AL         
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  N FT SSV+ AC GL  L   +Q+H  + K G  S++F  S+L+D+Y++ G + +A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +   ++V+W+++I+GF++++   E + LF++M++AG    + T  SVL AC+ +
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 351 GMVEKGKSYFDLMVK--QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
            ++E G+     ++K  Q  +L N      ++D+  + G + +A  + + M      S W
Sbjct: 178 ALLELGRQVHVHVLKYDQDLILNN-----ALLDMYCKCGSLEDANAVFVRMVEKDVIS-W 231

Query: 409 GSLLASC--RNYRNLELAEIAAKQLFGMEPD 437
            +++A      Y    L    + ++ G++P+
Sbjct: 232 STMIAGLAQNGYSKEALKLFESMKVLGIKPN 262


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/607 (38%), Positives = 365/607 (60%), Gaps = 41/607 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS-------G 86
           +   + L+SCA       G+  H  II +GL+ D  T N L+N YSK   +        G
Sbjct: 107 NVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLG 166

Query: 87  ARKVFDE-------------------------MPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           A +VFDE                         MP++ +VSWNTII     NG  +E + +
Sbjct: 167 AGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
              M      P S FT+SSVL   A   D+   K++H  +++  +D +++V ++L+D+YA
Sbjct: 227 IREMGGANLKPDS-FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYA 285

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KC  ++D+ RVF  + ER+ ++W+S++AG VQN L++E L  FR+  +  ++   ++ SS
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           ++ ACA L  L  GKQ+H  + + GF  N+F ASSLVDMYAKCG +  A  +F  +  ++
Sbjct: 346 IMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +V W  MI G + H ++ + + LFE+M+  G+ PN   +++VL+ACSH G+V++   YF+
Sbjct: 406 MVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFN 465

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M +   + P V HY+ + D+LGRAG + EAYD I  M    T S+W +LL++CR + N+
Sbjct: 466 SMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNI 525

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ++AE  A ++  ++P+N G ++LL+NIY+A RRW+E A+ R  +R   ++K  + SW+E+
Sbjct: 526 DMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEV 585

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           K        G  +HP   +I   +E LVE M+K GY P+T    HDVE+ +K+ L+  HS
Sbjct: 586 KNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHS 645

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           E+LA+ FG++    G+ IR+ KNLR+C DCH+  KF S+I GRE +VRD +RFHHF NG+
Sbjct: 646 ERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGT 705

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 706 CSCGDYW 712



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 187/371 (50%), Gaps = 35/371 (9%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            YS   L+  + ++F+ +     ++W ++I  YT++G   +++  FI ML  G  P    
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYP-DHN 107

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR----- 191
              SVL +CA   D+   + LH + ++  +D +++ G AL+++Y+K   + ++ R     
Sbjct: 108 VFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGA 167

Query: 192 ---------------------------VFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
                                      +FE MPE++ V+W++++AG  +N LYEE L + 
Sbjct: 168 GEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMI 227

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           R      L+ + FT+SSV+   A    + +GK++H    + G  ++++ ASSL+DMYAKC
Sbjct: 228 REMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKC 287

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
             V D+  VF+ + E++ + WN++I+G  ++    E +  F +M  A + P   ++ S++
Sbjct: 288 TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIM 347

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            AC+H+  +  GK     + + +    N+F  S ++D+  + G I  A  +   M     
Sbjct: 348 PACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 405 ASMWGSLLASC 415
            S W +++  C
Sbjct: 407 VS-WTAMIMGC 416



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 44/293 (15%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+   L+ D+ R+F ++     + W S++  +  + L  ++L  F      GL  +   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK-------------CG 285
             SV+ +CA L  L  G+ +H  + + G   +++  ++L++MY+K              G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 286 CVVDAYF-------------------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
            V D                      +F  + EK++V WNT+I+G +R+    E + +  
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M  A L P+  T  SVL   +    + +GK      ++Q  +  +++  S +ID+  + 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ-GLDADIYVASSLIDMYAKC 287

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASC----------RNYRNLELAEIAAK 429
             + ++   +  +  +     W S++A C          R +R + +A+I  K
Sbjct: 288 TRVADSCR-VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPK 339


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/605 (41%), Positives = 360/605 (59%), Gaps = 29/605 (4%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC-- 81
           AS    ++  ++L A L+SCA           HA  I  G   D  T+N L+N   K   
Sbjct: 40  ASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPG 99

Query: 82  --------------GLISGA----RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                         GL S A    RKVFDEM +R  VSWNT+I     + R QEA+++  
Sbjct: 100 FHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVR 159

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M R+G  P   FT+S+VL   A   D+     +H +A+K   D +VFVG++L+D+YA C
Sbjct: 160 EMWRDGFMP-DTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANC 218

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
             +  + +VF+S  + + V W+SM+AG+ QN   EEAL +FRR    G+     T SS+I
Sbjct: 219 TQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI 278

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            A   L+ L  GKQ+HA L +  F  N+F +SSL+DMY KCG V  A  VF+GI+  ++V
Sbjct: 279 PAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIV 338

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W  MI G++ H  + E  +LFE+M+   + PN  T+++VL+ACSH G+V+ G  YF+ M
Sbjct: 339 SWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSM 398

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
             Q+  +P++ H + + D LGRAG + EAY+ I  M    T+S+W +LL +CR ++N  L
Sbjct: 399 SNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVL 458

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
           AE  AK++F +EP + G+H++LSN+Y+A+ RW E A+ RK +R   +KKE + SW+E+K 
Sbjct: 459 AEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKN 518

Query: 484 K--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
           K        ++HP    I   L    E+M + GY P  E  L D+E+ +K+E+L  HSEK
Sbjct: 519 KLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEK 578

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FG++   PG  IR+MKNLR+C DCH   KF S+I  RE +VRD+NRFH F +G+CS
Sbjct: 579 LAIVFGIISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCS 638

Query: 596 CWDFW 600
           C DFW
Sbjct: 639 CGDFW 643



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 40/227 (17%)

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           L+  +L L  RA V        ++ + + +CAGL        +HA+  ++G  ++ F A+
Sbjct: 29  LHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTAN 88

Query: 276 SLVDMYAKC---------------GCVVDAYF-----VFSGIEEKNVVLWNTMISGFSRH 315
           +L+++  K                G +  A +     VF  + E++ V WNT+I G + H
Sbjct: 89  ALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEH 148

Query: 316 ARSVEVMILFEKMQQAGLHPNE---QTYISVLSACSHI--GMVEKG---KSYFDLMVKQH 367
            R  E + +  +M + G  P+     T + + + C+ I  GMV  G   K+ FD      
Sbjct: 149 KRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFD------ 202

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF-DATASMWGSLLA 413
               +VF  S +ID+   A      Y + +   F D  A +W S+LA
Sbjct: 203 ---NDVFVGSSLIDMY--ANCTQMDYSMKVFDSFSDCDAVLWNSMLA 244


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/601 (38%), Positives = 370/601 (61%), Gaps = 13/601 (2%)

Query: 11  FYYKSFSSSAIASASANANATELST---LQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
           F ++SF++  I     ++  +  S      + L+SC   +A   GK  HA++  +G+  +
Sbjct: 33  FLHQSFATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYN 92

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
              +  L+NFYS C  +  A  +FD++P+  +  WN +I +Y  NG  + A++L+  ML 
Sbjct: 93  LDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLE 152

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
            G  P   FT+  VL AC+A   + E + +H   +++  +R+VFVG AL+D+YAKCG + 
Sbjct: 153 YGLKP-DNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVV 211

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
           DA  VF+ + +R+ V W+SM+A + QN   +E+L L       G+   + T+ +VI + A
Sbjct: 212 DARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSA 271

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            +A L  G+++H    + GF  N    ++L+DMYAKCG V  A  +F  + EK VV WN 
Sbjct: 272 DIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNA 331

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           +I+G++ H  +VE + LFE+M +    P+  T++  L+ACS   ++++G++ ++LMV+  
Sbjct: 332 IITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDC 390

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            + P V HY+CM+D+LG  G + EAYDLI  M     + +WG+LL SC+ + N+ELAE+A
Sbjct: 391 RINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVA 450

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK----- 482
            ++L  +EPD++GN+++L+N+YA + +WE VAR R+L+ D  +KK  + SW+E+K     
Sbjct: 451 LEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYA 510

Query: 483 ---GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
              G  +HP    IY++L++L   M++ GY P+T    HDVE+  K +++  HSE+LA+ 
Sbjct: 511 FLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIA 570

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+   PG  + I KNLRIC DCH  +KF S+I  RE  VRD+NR+HHF +G CSC D+
Sbjct: 571 FGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDY 630

Query: 600 W 600
           W
Sbjct: 631 W 631


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/639 (37%), Positives = 365/639 (57%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T+   L SCA  +    G+  H+ ++ +GL +    +  L+N Y+KCG    A+ VFD  
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        +MP R IVSWN++I  Y+  G   EA+A+F 
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFS 263

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG---------- 173
            ML E       FT++S+L ACA    +   KQ+H + L+A  + +  VG          
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 174 -----------------------TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                                  T+LLD Y K G +  A  +F  + +R+ V W++M+ G
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +VQN L+ +AL LFR     G E N +T+++++   + L  L  GKQ+HA   K G  S 
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
               ++L+ MYAK G +  A  VF     +K +V W +MI   ++H    E + LFE+M 
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ P+  TY+ VLSAC+H+G+VE+G+ Y+++M + H + P + HY+CMID+ GRAGL+
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EAY  I +MP +     WGSLLASC+ ++N +LA++AA++L  ++P N+G +L L+N+Y
Sbjct: 564 QEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVY 623

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           +A  +WE  A+ RKL++D  V+KEK  SW+ IK + +        HP+  EIY  + ++ 
Sbjct: 624 SACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           EE+KK+G+ P+TE  LHD+E+  K+++L +HSEKLA+ FGL+       +RIMKNLR+C 
Sbjct: 684 EEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCN 743

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHS +KF S++ GRE IVRD  RFHHF +GSCSC D+W
Sbjct: 744 DCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 63/292 (21%)

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G +P S    + +L      +D F  + +H   +K  +   V++   L+  YAK G +  
Sbjct: 4   GNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63

Query: 189 ASRVFESMPER-------------------------------NEVTWSSMVAGFVQNELY 217
           A  VF+ MP +                               + V+W++++ G+ Q  L+
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           + A+ +F +     +  +QFT+S+V+ +CA    L  G+++H+ + K G GS +  A+SL
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKN-------------------------------VVLWN 306
           ++MYAKCG  V A  VF  +  KN                               +V WN
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243

Query: 307 TMISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +MISG+S+   ++E + +F KM  +  L P+  T  S+LSAC+++  +  GK
Sbjct: 244 SMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 349/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G+  H   I  G  +D   S +LI+ YSK G +  AR++ + +
Sbjct: 347 TYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVL 406

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW ++I  Y  +   +EA+  F +M   G  P     ++S + ACA  + + + 
Sbjct: 407 EAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWP-DNIGLASAISACAGIKAMRQG 465

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H     +    +V +  AL+++YA+CG   +A  +FE++  ++++TW+ MV+GF Q+
Sbjct: 466 QQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQS 525

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            LYEEAL +F +    G++YN FT  S I A A LA + QGKQ+HA + KTG  S    A
Sbjct: 526 GLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVA 585

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y KCG + DA   F  + E+N V WNT+I+  S+H   +E + LF++M+Q GL 
Sbjct: 586 NALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLK 645

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VL+ACSH+G+VE+G  YF  M  +H + P   HY+C++DILGRAG +  A  
Sbjct: 646 PNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARK 705

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            +  MP  A A +W +LL++CR ++N+E+ E+AAK L  +EP ++ +++LLSN YA   +
Sbjct: 706 FVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGK 765

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W      RK+++D  V+KE  +SW+E+K        G R HP   +IY  L  L + + K
Sbjct: 766 WACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAK 825

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY        H+ E  +K      HSEKLA+ FGLM L P +P+R++KNLR+C DCH++
Sbjct: 826 IGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTW 885

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MKF S + GRE ++RD+ RFHHF NG+CSC DFW
Sbjct: 886 MKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 215/384 (55%), Gaps = 3/384 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA      +GK  H+ ++  G++ D +    L++ Y KCG+I  A ++F   
Sbjct: 246 TIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSG 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN ++ +Y       ++  LF  M+  G  P +EFT   +L  C    ++   
Sbjct: 306 DRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRP-NEFTYPCLLRTCTYAGEINLG 364

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H+ ++K   + +++V   L+D+Y+K G +  A R+ E +  ++ V+W+SM+AG+VQ+
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  +EAL  F+  Q+ G+  +   ++S I ACAG+ A+ QG+Q+H+ +  +G+ +++   
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV++YA+CG   +A+ +F  IE K+ + WN M+SGF++     E + +F KM QAG+ 
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK 544

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            N  T++S +SA +++  +++GK     ++K           + +I + G+ G I +A  
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKM 603

Query: 395 LILNMPFDATASMWGSLLASCRNY 418
               M      S W +++ SC  +
Sbjct: 604 QFFEMSERNHVS-WNTIITSCSQH 626



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 130/390 (33%), Positives = 206/390 (52%), Gaps = 7/390 (1%)

Query: 54  VCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           V HAK I  GL  D +  N+LI+ Y+K GL+  AR+VF+++  R  VSW  ++  Y  NG
Sbjct: 63  VIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL-HVFALKAAMDRNVFV 172
             +EAV L+  M   G  P + + +SSVL AC  K  +FE  +L H    K        V
Sbjct: 123 LGEEAVGLYHQMHCSGVVP-TPYVLSSVLSACT-KAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           G AL+ +Y + G +S A RVF  MP  + VT++++++   Q    E AL +F   ++ G 
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             +  TI+S++ ACA +  L +GKQ+H+ L K G   +     SL+D+Y KCG +V+A  
Sbjct: 241 TPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F   +  NVVLWN M+  + + +   +   LF +M  AG+ PNE TY  +L  C++ G 
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +  G+    L +K      +++    +ID+  + G + +A  ++  +      S W S++
Sbjct: 361 INLGEQIHLLSIKT-GFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS-WTSMI 418

Query: 413 ASCRNYRNLE--LAEIAAKQLFGMEPDNAG 440
           A    +   +  L      QLFG+ PDN G
Sbjct: 419 AGYVQHEFCKEALETFKDMQLFGIWPDNIG 448



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 193/361 (53%), Gaps = 2/361 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + L +C +     +G++ HA++   G  ++T+  N LI  Y + G +S A +VF EM
Sbjct: 145 VLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEM 204

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P    V++NT+I  +   G  + A+ +F  M   G TP    T++S+L ACA+  D+ + 
Sbjct: 205 PYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP-DCVTIASLLAACASIGDLNKG 263

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQLH + LKA M  +  +  +LLD+Y KCG+I +A  +F+S    N V W+ M+  + Q 
Sbjct: 264 KQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQI 323

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               ++  LF +    G+  N+FT   ++  C     +  G+Q+H +  KTGF S+M+ +
Sbjct: 324 SDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVS 383

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             L+DMY+K G +  A  +   +E K+VV W +MI+G+ +H    E +  F+ MQ  G+ 
Sbjct: 384 GVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIW 443

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+     S +SAC+ I  + +G+      V       +V  ++ ++++  R G   EA+ 
Sbjct: 444 PDNIGLASAISACAGIKAMRQGQQIHS-RVYVSGYSADVSIWNALVNLYARCGRSKEAFS 502

Query: 395 L 395
           L
Sbjct: 503 L 503


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 360/609 (59%), Gaps = 44/609 (7%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T    L  CA +R   +G+  HA +I   +  + +    L++ YS+CG ++ A+++F+ M
Sbjct: 481  TFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 540

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             +R   SWN++I  Y  NG  QEA+ LF  M   G  P   F++SS+L +C +  D  + 
Sbjct: 541  AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC-FSLSSMLSSCVSLSDSQKG 599

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLI---------------------------- 186
            ++LH F ++  M+    +   L+D+YAKCG +                            
Sbjct: 600  RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNS 659

Query: 187  ---SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
               +DA  +F+ M +RN   W+S++AG+    L +E+   F       +EY+  T+ +++
Sbjct: 660  GRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV 719

Query: 244  CACAGLAALIQGKQVHAVLCKTGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
              C+ L AL  G Q+H+++ K GF   ++   ++LVDMY+KCG +  A  VF  +  KN+
Sbjct: 720  NLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNI 779

Query: 303  VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
            V WN MISG+S+H  S E +IL+E+M + G++PNE T++++LSACSH G+VE+G   F  
Sbjct: 780  VSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTS 839

Query: 363  MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
            M + +N+     HY+CM+D+LGRAG + +A + +  MP +   S WG+LL +CR +++++
Sbjct: 840  MQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMD 899

Query: 423  LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
            +  +AA++LF ++P N G ++++SNIYAA  RW+EV   R++++   VKK+   SW+EI 
Sbjct: 900  MGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEIN 959

Query: 483  --------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR---KQELLIH 531
                    G + HP+  EIY+ L  L  + K LGY P+T   L +V+D +   ++E L+ 
Sbjct: 960  SEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQ 1019

Query: 532  HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
            HSE+LAL+ GL+ L     IR+ KNLRICGDCH+  KF S+I GR  I RD NRFHHF N
Sbjct: 1020 HSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFEN 1079

Query: 592  GSCSCWDFW 600
            G CSC D+W
Sbjct: 1080 GKCSCGDYW 1088



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 211/374 (56%), Gaps = 12/374 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L+ C   R+   GK  H+K+I  G   DT   N LI+ Y+KC       KVFDEM
Sbjct: 278 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 337

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R  V+WN+II +    G   +A+ LF+ M   G    + F + S+L A A   D+ + 
Sbjct: 338 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKS-NRFNLGSILMASAGLADIGKG 396

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           ++LH   ++  ++ ++ +G+AL+D+Y+KCG++ +A +VF S+ ERNEV++++++AG+VQ 
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456

Query: 215 ELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
              EEAL L+   Q   G++ +QFT ++++  CA      QG+Q+HA L +     N+  
Sbjct: 457 GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 516

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + LV MY++CG +  A  +F+ + E+N   WN+MI G+ ++  + E + LF++MQ  G+
Sbjct: 517 ETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 576

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  +  S+LS+C  +   +KG+   + +V+       +     ++D+  + G +  A+
Sbjct: 577 KPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKCGSMDYAW 635

Query: 394 ---------DLILN 398
                    D+ILN
Sbjct: 636 KVYDQTIKKDVILN 649



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 219/417 (52%), Gaps = 10/417 (2%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
            + N ++  T  + +++C         +   + ++  GLN +      L++ Y++ G + 
Sbjct: 168 GSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMD 227

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            A    DE+    +V+WN +I  Y      +EA  +F  ML+ G  P   FT +S L  C
Sbjct: 228 DAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCP-DNFTFASALRVC 286

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
            A R     KQ+H   +      + FVG AL+D+YAKC       +VF+ M ERN+VTW+
Sbjct: 287 GALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWN 346

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           S+++   Q   + +AL+LF R Q  G + N+F + S++ A AGLA + +G+++H  L + 
Sbjct: 347 SIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRN 406

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
              S++   S+LVDMY+KCG V +A+ VF  + E+N V +N +++G+ +  ++ E + L+
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELY 466

Query: 326 EKMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
             MQ + G+ P++ T+ ++L+ C++     +G+     +++  N+  N+   + ++ +  
Sbjct: 467 HDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNIIVETELVHMYS 525

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE----IAAKQLFGMEPD 437
             G ++ A + I N   +  A  W S++   +  +N E  E        QL G++PD
Sbjct: 526 ECGRLNYAKE-IFNRMAERNAYSWNSMIEGYQ--QNGETQEALRLFKQMQLNGIKPD 579



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 204/382 (53%), Gaps = 10/382 (2%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF 77
           +S     +++ N    S+L   +Q C    +  RGK  H ++I  G N D      ++  
Sbjct: 59  TSIHTKPASDVNPLPYSSL---IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILML 115

Query: 78  YSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
           Y++ G +     ARK+F+EMP+R + +WNT+I +Y       E + L+  M   G     
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS-D 174

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
           +FT  SV+ AC A  D+   +QL    +KA ++ N+FVG AL+D YA+ G + DA    +
Sbjct: 175 KFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLD 234

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
            +   + VTW++++AG+V+   +EEA  +F R   +G+  + FT +S +  C  L +   
Sbjct: 235 EIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 294

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           GKQVH+ L   GF  + F  ++L+DMYAKC        VF  + E+N V WN++IS  ++
Sbjct: 295 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL-PNV 373
                + ++LF +MQ++G   N     S+L A + +  + KG+     +V+  N+L  ++
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR--NLLNSDI 412

Query: 374 FHYSCMIDILGRAGLIHEAYDL 395
              S ++D+  + G++ EA+ +
Sbjct: 413 ILGSALVDMYSKCGMVEEAHQV 434



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 210/394 (53%), Gaps = 32/394 (8%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           +G+  H  ++   LN+D +  + L++ YSKCG++  A +VF  + +R  VS+N ++  Y 
Sbjct: 395 KGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYV 454

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
             G+ +EA+ L+ +M  E      +FT +++L  CA +R+  + +Q+H   ++A + +N+
Sbjct: 455 QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNI 514

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V T L+ +Y++CG ++ A  +F  M ERN  +W+SM+ G+ QN   +EAL LF++ Q+ 
Sbjct: 515 IVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN 574

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G++ + F++SS++ +C  L+   +G+++H  + +            LVDMYAKCG +  A
Sbjct: 575 GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYA 634

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-------------------- 330
           + V+    +K+V+L N M+S F    R+ +   LF++M+Q                    
Sbjct: 635 WKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKK 694

Query: 331 -----------AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
                      + +  +  T +++++ CS +  +E G     L++K+  V  +V   + +
Sbjct: 695 ESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETAL 754

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +D+  + G I +A  +  NM      S W ++++
Sbjct: 755 VDMYSKCGAITKARTVFDNMNGKNIVS-WNAMIS 787


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/639 (37%), Positives = 364/639 (56%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T+   L SCA  +    G+  H+ ++ +GL +    +  L+N Y+KCG    A+ VFD  
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        +MP R IVSWN++I  Y+  G   EA+ +F 
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFS 263

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG---------- 173
            ML E       FT++S+L ACA    +   KQ+H + L+A  + +  VG          
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 174 -----------------------TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                                  T+LLD Y K G +  A  +F  + +R+ V W++M+ G
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +VQN L+ +AL LFR     G E N +T+++++   + L  L  GKQ+HA   K G  S 
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
               ++L+ MYAK G +  A  VF     +K +V W +MI   ++H    E + LFE+M 
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ P+  TY+ VLSAC+H+G+VE+G+ Y+++M + H + P + HY+CMID+ GRAGL+
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EAY  I +MP +     WGSLLASC+ ++N +LA++AA++L  ++P N+G +L L+N+Y
Sbjct: 564 QEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVY 623

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           +A  +WE  A+ RKL++D  V+KEK  SW+ IK + +        HP+  EIY  + ++ 
Sbjct: 624 SACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           EE+KK+G+ P+TE  LHD+E+  K+++L +HSEKLA+ FGL+       +RIMKNLR+C 
Sbjct: 684 EEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCN 743

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHS +KF S++ GRE IVRD  RFHHF +GSCSC D+W
Sbjct: 744 DCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 63/292 (21%)

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G +P S    + +L      +D F  + +H   +K  +   V++   L+  YAK G +  
Sbjct: 4   GNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRF 63

Query: 189 ASRVFESMPER-------------------------------NEVTWSSMVAGFVQNELY 217
           A  VF+ MP +                               + V+W++++ G+ Q  L+
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           + A+ +F +     +  +QFT+S+V+ +CA    L  G+++H+ + K G GS +  A+SL
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSL 183

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKN-------------------------------VVLWN 306
           ++MYAKCG  V A  VF  +  KN                               +V WN
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWN 243

Query: 307 TMISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +MISG+S+   ++E +++F KM  +  L P+  T  S+LSAC+++  +  GK
Sbjct: 244 SMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/569 (43%), Positives = 347/569 (60%), Gaps = 10/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L S  R R+  +G   HA I+  GL    L S+ LIN YSK  L   + +VFDE P++  
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSS 91

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            +W+++I ++  N     A+  F  ML +G  P  +    S   AC   R     K +H 
Sbjct: 92  TTWSSVISAFAQNEAPLLALQFFRRMLNDGVRP-DDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+K     +VFVG++L+D+YAKCG I DA  +F+ MPERN V+WS M+ G+ Q +   E
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVE 210

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF++A +  ++ N FT SSVI  C+    L  GK +H +  K  F S+ F  S+L+ 
Sbjct: 211 ALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALIS 270

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           +Y+KCG +  AY VF  I  +N+ LWN+M+   ++HA +  V  LFE+M   G+ PN  +
Sbjct: 271 LYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIS 330

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++SVL ACSH G+VEKG+ YF LM + + + P   HY+ ++D+LGRAG + EA  +I  M
Sbjct: 331 FLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQM 389

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P   T S+WG+LL  CR +++ E+A   A ++  M+  ++G H+LLSN YAA  R+EE A
Sbjct: 390 PMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAA 449

Query: 460 RARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R RK++RD  VKKE   SWVE          G R+H +  EIY KLE+L EEM+K GY  
Sbjct: 450 RMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVA 509

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T   L  V+   K E + +HSE+LA+ FGL+   PG PIR+MKNLR+CGDCH+ +KF S
Sbjct: 510 DTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMS 569

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  GR  IVRD NRFH F +G CSC D+W
Sbjct: 570 KCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 189/381 (49%), Gaps = 22/381 (5%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           + ++L +    R + +  QLH   LK  +     V   L+++Y+K  L   + +VF+  P
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           +++  TWSS+++ F QNE    AL  FRR    G+  +     S   AC  L     GK 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH +  KTG+  ++F  SSLVDMYAKCG + DA  +F  + E+NVV W+ MI G+++   
Sbjct: 148 VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
            VE + LF++     +  N+ T+ SV+  CS    +E GK    L +K  +   + F  S
Sbjct: 208 GVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM-SFDSSSFVGS 266

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL--FGME 435
            +I +  + G+I  AY +   +P      +W S+L +C  + + +      +++   GM+
Sbjct: 267 ALISLYSKCGVIEGAYQVFDEIP-TRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMK 325

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARK---LIRDS--EVKKEKSKSWVEIKGKRNHPRI 490
           P+       LS +YA +     V + R+   L+RD   E + E   S V++ G+      
Sbjct: 326 PNFIS---FLSVLYACSHA-GLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAG---- 377

Query: 491 AEIYSKLEKLVEEMKKLGYKP 511
                KL++ V  +K++  +P
Sbjct: 378 -----KLQEAVSVIKQMPMRP 393



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 2/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + ++ C+       GK+ H   + M  ++ +   + LI+ YSKCG+I GA +VFDE+
Sbjct: 229 TFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEI 288

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +  WN+++ +   +   Q    LF  M   G  P +  +  SVL AC+    V + 
Sbjct: 289 PTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKP-NFISFLSVLYACSHAGLVEKG 347

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
           ++         ++       +L+D+  + G + +A  V + MP R  E  W +++ G
Sbjct: 348 REYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 341/574 (59%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L  C    A   G+  H  II  GL  D    N LIN Y +CG +  A +VF  +
Sbjct: 589  TFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              R ++SW  +IG +   G +++A  LF  M  +G  P    T SS+L AC +   + E 
Sbjct: 649  RHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKS-TFSSILKACMSSACLDEG 707

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            K++    L +  + +  VG AL+  Y+K G ++DA +VF+ MP R+ ++W+ M+AG+ QN
Sbjct: 708  KKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQN 767

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             L   AL    + Q  G+  N+F+  S++ AC+  +AL +GK+VHA + K     ++   
Sbjct: 768  GLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVG 827

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            ++L+ MYAKCG + +A  VF    EKNVV WN MI+ +++H  + + +  F  M + G+ 
Sbjct: 828  AALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIK 887

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            P+  T+ S+LSAC+H G+V +G   F  +  QH + P + HY C++ +LGRAG   EA  
Sbjct: 888  PDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAET 947

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            LI  MPF   A++W +LL +CR + N+ LAE AA     +   N   ++LLSN+YAA  R
Sbjct: 948  LINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGR 1007

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKK 506
            W++VA+ R+++    ++KE  +SW+E        I   R+HP  AEIY +L++L  EM++
Sbjct: 1008 WDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMER 1067

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
             GY P+T++ LH+++   ++  L  HSE+LA+ +GL+   PG PIRI KNLRICGDCH+ 
Sbjct: 1068 AGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTA 1127

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S++ GRE I RD NRFH F NG CSC DFW
Sbjct: 1128 SKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 199/380 (52%), Gaps = 3/380 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  + L +C+  +A   G++ H+ I  +G ++D    N LI+ Y++CG +  AR++F+ 
Sbjct: 386 TTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNT 445

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R ++SWN II  Y       EA+ L+  M  EG  P    T   +L AC       +
Sbjct: 446 MPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKP-GRVTFLHLLSACTNSSAYSD 504

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H   L++ +  N  +  AL+++Y +CG I +A  VFE    R+ ++W+SM+AG  Q
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +  YE A  LF   +  GLE ++ T +SV+  C    AL  G+Q+H ++ ++G   ++  
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L++MY +CG + DAY VF  +  +NV+ W  MI GF+      +   LF +MQ  G 
Sbjct: 625 GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF 684

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P + T+ S+L AC     +++GK     ++     L      + +I    ++G + +A 
Sbjct: 685 KPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG-NALISAYSKSGSMTDAR 743

Query: 394 DLILNMPFDATASMWGSLLA 413
            +   MP     S W  ++A
Sbjct: 744 KVFDKMPNRDIMS-WNKMIA 762



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 204/373 (54%), Gaps = 3/373 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +C    A   GK+ H  I+  G+ ++   +N L+N Y +CG I  A+ VF+    R I
Sbjct: 493 LSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDI 552

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +SWN++I  +  +G  + A  LF+ M +EG  P  + T +SVL  C     +   +Q+H+
Sbjct: 553 ISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEP-DKITFASVLVGCKNPEALELGRQIHM 611

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +++ +  +V +G AL+++Y +CG + DA  VF S+  RN ++W++M+ GF       +
Sbjct: 612 LIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRK 671

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A  LF + Q  G +  + T SS++ AC   A L +GK+V A +  +G+  +    ++L+ 
Sbjct: 672 AFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALIS 731

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
            Y+K G + DA  VF  +  ++++ WN MI+G++++      +    +MQ+ G+  N+ +
Sbjct: 732 AYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFS 791

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++S+L+ACS    +E+GK     +VK+  +  +V   + +I +  + G + EA ++  N 
Sbjct: 792 FVSILNACSSFSALEEGKRVHAEIVKR-KMQGDVRVGAALISMYAKCGSLEEAQEVFDNF 850

Query: 400 PFDATASMWGSLL 412
             +     W +++
Sbjct: 851 T-EKNVVTWNAMI 862



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 219/413 (53%), Gaps = 21/413 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C        GK  H+KII  G   D    N L+N Y KC  +  AR+VF  +
Sbjct: 185 TYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI 244

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VS+NT++G Y      +E + LF  M  EG  P  + T  ++L A      + E 
Sbjct: 245 YRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEG-IPPDKVTYINLLDAFTTPSMLDEG 303

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H  A+   ++ ++ VGTAL  ++ +CG ++ A +  E+  +R+ V +++++A   Q+
Sbjct: 304 KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQH 363

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             YEEA   + + +  G+  N+ T  SV+ AC+   AL  G+ +H+ + + G  S++   
Sbjct: 364 GHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIG 423

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+ MYA+CG +  A  +F+ + +++++ WN +I+G++R     E M L+++MQ  G+ 
Sbjct: 424 NSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVK 483

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P   T++ +LSAC++      GK   + +++   +  N    + ++++  R G I EA +
Sbjct: 484 PGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIMEAQN 542

Query: 395 LILNMPFDATASM----WGSLLASCRNYRNLELAEIAAKQLF------GMEPD 437
           +     F+ T +     W S++A    + + E    AA +LF      G+EPD
Sbjct: 543 V-----FEGTRARDIISWNSMIAGHAQHGSYE----AAYKLFLEMKKEGLEPD 586



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 198/380 (52%), Gaps = 15/380 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           +Q+C R+R+    K  HA+++  G+  D   SN+LIN Y KC  +S A +VF +MP+R +
Sbjct: 89  VQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDV 148

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +SWN++I  Y   G +++A  LF  M   G  P S+ T  S+L AC +  ++   K++H 
Sbjct: 149 ISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIP-SKITYISILTACCSPAELEYGKKIHS 207

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             ++A   R+  V  +LL++Y KC  +  A +VF  +  R+ V++++M+  + Q    EE
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEE 267

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            + LF +    G+  ++ T  +++ A    + L +GK++H +    G  S++   ++L  
Sbjct: 268 CIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALAT 327

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           M+ +CG V  A        +++VV++N +I+  ++H    E    + +M+  G+  N  T
Sbjct: 328 MFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTT 387

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS------CMIDILGRAGLIHEAY 393
           Y+SVL+ACS    +  G+         H+ +  V H S       +I +  R G +  A 
Sbjct: 388 YLSVLNACSTSKALGAGELI-------HSHISEVGHSSDVQIGNSLISMYARCGDLPRAR 440

Query: 394 DLILNMPFDATASMWGSLLA 413
           +L   MP     S W +++A
Sbjct: 441 ELFNTMPKRDLIS-WNAIIA 459



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 147/285 (51%), Gaps = 3/285 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + L++C        GK   A I+  G   DT   N LI+ YSK G ++ ARKVFD+
Sbjct: 689 STFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDK 748

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R I+SWN +I  Y  NG    A+     M  +G    ++F+  S+L AC++   + E
Sbjct: 749 MPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG-VVLNKFSFVSILNACSSFSALEE 807

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K++H   +K  M  +V VG AL+ +YAKCG + +A  VF++  E+N VTW++M+  + Q
Sbjct: 808 GKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQ 867

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL-CKTGFGSNMF 272
           + L  +AL  F      G++ +  T +S++ AC     +++G ++ + L  + G    + 
Sbjct: 868 HGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIE 927

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHA 316
               LV +  + G   +A  + + +    +  +W T++     H 
Sbjct: 928 HYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHG 972



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 75/125 (60%)

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           E N+     ++  C    +L + K++HA + + G G ++F ++ L++MY KC  V DA+ 
Sbjct: 79  ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQ 138

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  +  ++V+ WN++IS +++     +   LFE+MQ AG  P++ TYIS+L+AC     
Sbjct: 139 VFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAE 198

Query: 353 VEKGK 357
           +E GK
Sbjct: 199 LEYGK 203


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 340/557 (61%), Gaps = 9/557 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H     +G  +D    N L+N YS CG +  ARKVFD+M  + +VSW T+IG+Y  
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 215

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
                EA+ LF  M      P +E T+ +VL ACA  RD+   KQ+H +  +  +  +  
Sbjct: 216 WDLPHEAIKLFRRMEIASVKP-NEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTV 274

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           + +AL+DVY KCG    A  +F  MPE+N   W+ M+ G V++  YEEAL LF   Q+ G
Sbjct: 275 LTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSG 334

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ ++ T++S++ AC  L AL  GK +H  + K     ++   ++LVDMYAKCG +  A 
Sbjct: 335 VKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAM 394

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + EK+V+ W  +I G +   + ++ + LF +MQ + + P+  T++ VL+ACSH G
Sbjct: 395 RVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAG 454

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +V +G +YF+ M  ++ + P++ HY CM+D+LGRAG I EA DLI NMP      +   L
Sbjct: 455 LVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGL 514

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L++CR + NL +AE AA+QL  ++P N G ++LLSNIY++ + WE   + R+L+ +  +K
Sbjct: 515 LSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIK 574

Query: 472 KEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           K    S +E        +KG  +HP+ +EIY  L+ ++  +K  GY P+    L D+++ 
Sbjct: 575 KPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEK 634

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
            K+  L  HSEKLA+ FGL+   PG PIR++KNLR+C DCHS MKF S +  RE IVRD 
Sbjct: 635 EKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDR 694

Query: 584 NRFHHFTNGSCSCWDFW 600
           NRFHHFT GSCSC DFW
Sbjct: 695 NRFHHFTKGSCSCRDFW 711



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 210/391 (53%), Gaps = 14/391 (3%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYS--KCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA+++   L  D  +++ ++ F +    G +  AR VF+++P     + N+II  YT
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
                ++A+  +  M+ +G  P   FT  S+  +C     + E KQLH  + K     + 
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDP-DRFTFPSLFKSCGV---LCEGKQLHCHSTKLGFASDA 172

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           ++   L+++Y+ CG +  A +VF+ M  ++ V+W++M+  + Q +L  EA+ LFRR ++ 
Sbjct: 173 YIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIA 232

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            ++ N+ T+ +V+ ACA    L   KQVH  + +TG G +    S+L+D+Y KCGC   A
Sbjct: 233 SVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLA 292

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F+ + EKN+  WN MI+G    +   E + LF +MQ +G+  ++ T  S+L AC+H+
Sbjct: 293 RDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHL 352

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G +E GK +  + +++  +  +V   + ++D+  + G I  A  +   MP +     W +
Sbjct: 353 GALELGK-WLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTA 410

Query: 411 L---LASC-RNYRNLELAEIAAKQLFGMEPD 437
           L   LA C +  + LEL      Q+  ++PD
Sbjct: 411 LIVGLAMCGQGLKALEL--FHEMQMSEVKPD 439


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/588 (39%), Positives = 355/588 (60%), Gaps = 40/588 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV----------- 100
           G+  H +I+  G        + L++ Y+K GL+S A +VFDE+ +R +V           
Sbjct: 157 GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLR 216

Query: 101 --------------------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                               SW T+I     NG E EA+ LF +M +EG     ++T  S
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEG-MAMDQYTFGS 275

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           VL AC   R + E K++H   +++  + NVFVG+AL+D+Y KC  +  A  VF+ M  +N
Sbjct: 276 VLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKN 335

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            V+W++M+ G+ QN   EEA+ +F   Q  G+E + FT+ SVI +CA LA+L +G Q H 
Sbjct: 336 VVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHC 395

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
               +G  S +  +++L+ +Y KCG + D+  +F  +  ++ V W  ++SG+++  ++ E
Sbjct: 396 QALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANE 455

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFE+M   GL P+  T+I+VLSACS  G+VE+G+ YF+ M+K H ++P   HY+CMI
Sbjct: 456 TIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMI 515

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+ GRAG + EA + I  MPF   +  W +LL+SCR Y N E+ + AA+ L  ++P N  
Sbjct: 516 DLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPA 575

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
            ++LLS+IYAA  +W  VA+ R+ +R+   +KE   SW++ K K        ++ P   +
Sbjct: 576 GYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQ 635

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY++LEKL  +M + GY P+    LHDVEDS K ++L HHSEKLA+ FGL+ +  G+PIR
Sbjct: 636 IYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIR 695

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++KNLR+CGDCH+  K+ S+I+ RE +VRD  RFH F +G+CSC DFW
Sbjct: 696 VVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 140/459 (30%), Positives = 228/459 (49%), Gaps = 66/459 (14%)

Query: 43  CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ------ 96
           C   R   + K  H  II    N +T   N LIN YSK G I+ AR VFD+MPQ      
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 97  -------------------------RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
                                    R  VSWN++I  Y   G   EAV  + +M+++G  
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS---- 187
             +  T S++L   +++  V   +Q+H   +K      VFVG++L+D+YAK GL+S    
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 188 ---------------------------DASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
                                      D+ R+F  M ER+ ++W++M+ G +QN L  EA
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           + LFR  +  G+  +Q+T  SV+ AC GL AL +GK++H ++ ++G+  N+F  S+LVDM
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDM 314

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y KC  V  A  VF  +  KNVV W  M+ G+ ++  S E + +F  MQ+ G+ P++ T 
Sbjct: 315 YCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTL 374

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            SV+S+C+++  +E+G + F        ++  +   + +I + G+ G I ++  L   M 
Sbjct: 375 GSVISSCANLASLEEG-AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 401 FDATASMWGSLLASCRNY-RNLELAEIAAKQLF-GMEPD 437
           F    S W +L++    + +  E  ++  + L  G++PD
Sbjct: 434 FRDEVS-WTALVSGYAQFGKANETIDLFERMLVQGLKPD 471



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 149/284 (52%), Gaps = 5/284 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T  + L +C   RA   GK  H  II  G N++    + L++ Y KC  +  A  
Sbjct: 267 AMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEA 326

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF  M  + +VSW  ++  Y  NG  +EAV +F +M R G  P  +FT+ SV+ +CA   
Sbjct: 327 VFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEP-DDFTLGSVISSCANLA 385

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            + E  Q H  AL + +   + V  AL+ +Y KCG I D++++F+ M  R+EV+W+++V+
Sbjct: 386 SLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVS 445

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+ Q     E + LF R  V GL+ +  T  +V+ AC+    + +G+Q    + K   G 
Sbjct: 446 GYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKD-HGI 504

Query: 270 NMFAA--SSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMIS 310
             F+   + ++D++ + G + +A  F+       + + W T++S
Sbjct: 505 IPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLS 548


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/569 (43%), Positives = 346/569 (60%), Gaps = 10/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L S  R R+  +G   HA I+  GL    L S+ LIN YSK  L   + +VFDE P++  
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSS 91

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            +W+++I ++  N     A+  F  ML +G  P  +    S   AC   R     K +H 
Sbjct: 92  TTWSSVISAFAQNEAPLLALQFFRRMLNDGVRP-DDHIYPSATKACGFLRRSDVGKSVHC 150

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+K     +VFVG++L+D+YAKCG I DA  +F+ MPERN V+WS M+ G+ Q +   E
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVE 210

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF++A +  ++ N FT SSVI  C+    L  GK +H +  K  F S+ F  S+L+ 
Sbjct: 211 ALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALIS 270

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           +Y+KCG +  AY VF  I  +N+ LWN+M+   ++HA +  V  LFE+M   G+ PN   
Sbjct: 271 LYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIX 330

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++SVL ACSH G+VEKG+ YF LM + + + P   HY+ ++D+LGRAG + EA  +I  M
Sbjct: 331 FLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQM 389

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P   T S+WG+LL  CR +++ E+A   A ++  M+  ++G H+LLSN YAA  R+EE A
Sbjct: 390 PMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAA 449

Query: 460 RARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R RK++RD  VKKE   SWVE          G R+H +  EIY KLE+L EEM+K GY  
Sbjct: 450 RMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVA 509

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T   L  V+   K E + +HSE+LA+ FGL+   PG PIR+MKNLR+CGDCH+ +KF S
Sbjct: 510 DTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMS 569

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  GR  IVRD NRFH F +G CSC D+W
Sbjct: 570 KCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 188/384 (48%), Gaps = 28/384 (7%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           + ++L +    R + +  QLH   LK  +     V   L+++Y+K  L   + +VF+  P
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           +++  TWSS+++ F QNE    AL  FRR    G+  +     S   AC  L     GK 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH +  KTG+  ++F  SSLVDMYAKCG + DA  +F  + E+NVV W+ MI G+++   
Sbjct: 148 VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
            VE + LF++     +  N+ T+ SV+  CS    +E GK    L +K  +   + F  S
Sbjct: 208 GVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM-SFDSSSFVGS 266

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM--E 435
            +I +  + G+I  AY +   +P      +W S+L +C  + +        +++FG+  E
Sbjct: 267 ALISLYSKCGVIEGAYQVFDEIP-TRNLGLWNSMLIACAQHAH-------TQRVFGLFEE 318

Query: 436 PDNAG---NHLLLSNIYAANRRWEEVARARK---LIRDS--EVKKEKSKSWVEIKGKRNH 487
             N G   N +   ++  A      V + R+   L+RD   E + E   S V++ G+   
Sbjct: 319 MGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAG- 377

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKP 511
                   KL++ V  +K++  +P
Sbjct: 378 --------KLQEAVSVIKQMPMRP 393



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 2/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + ++ C+       GK+ H   + M  ++ +   + LI+ YSKCG+I GA +VFDE+
Sbjct: 229 TFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEI 288

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +  WN+++ +   +   Q    LF  M   G  P +     SVL AC+    V + 
Sbjct: 289 PTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKP-NFIXFLSVLYACSHAGLVEKG 347

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
           ++         ++       +L+D+  + G + +A  V + MP R  E  W +++ G
Sbjct: 348 REYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/574 (39%), Positives = 341/574 (59%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L  C    A   GK  H +I   GL  D    N LIN Y +CG +  AR VF  +
Sbjct: 534  TFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL 593

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              R ++SW  +IG     G + +A+ LF  M  EG  P    T SS+L  C +   + E 
Sbjct: 594  QHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKS-TFSSILKVCTSSACLDEG 652

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            K++  + L +  + +  VG AL+  Y+K G ++DA  VF+ MP R+ V+W+ ++AG+ QN
Sbjct: 653  KKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQN 712

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             L + A+    + Q   +  N+F+  S++ AC+  +AL +GK+VHA + K     ++   
Sbjct: 713  GLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVG 772

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            ++L+ MYAKCG   +A  VF  I EKNVV WN MI+ +++H  + + +  F  M++ G+ 
Sbjct: 773  AALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIK 832

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            P+  T+ S+LSAC+H G+V +G   F  M  ++ VLP + HY C++ +LGRA    EA  
Sbjct: 833  PDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAET 892

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            LI  MPF   A++W +LL +CR + N+ LAE AA     +   N   ++LLSN+YAA  R
Sbjct: 893  LINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGR 952

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKK 506
            W++VA+ R+++    ++KE  +SW+E        I   R+HP  AEIY++L++L  EM++
Sbjct: 953  WDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEE 1012

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
             GY P+T+H LHD+  + ++  L  HSE+LA+ +GL+   PG PIRI KNLRICGDCH+ 
Sbjct: 1013 AGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTA 1072

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S++ GRE I RD NRFH F NG CSC D+W
Sbjct: 1073 SKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 208/409 (50%), Gaps = 6/409 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A   +T  + L +C+  +A   GK+ H+ I   G ++D    N LI+ Y++CG +  AR+
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F  MP+R ++SWN II  Y       EA+ L+  M  EG  P    T   +L ACA   
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKP-GRVTFLHLLSACANSS 445

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
              + K +H   L++ +  N  +  AL+++Y +CG + +A  VFE    R+ ++W+SM+A
Sbjct: 446 AYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIA 505

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G  Q+  YE A  LF+  Q   LE +  T +SV+  C    AL  GKQ+H  + ++G   
Sbjct: 506 GHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   ++L++MY +CG + DA  VF  ++ ++V+ W  MI G +     ++ + LF +MQ
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G  P + T+ S+L  C+    +++GK     ++     L      + +I    ++G +
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVG-NALISAYSKSGSM 684

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
            +A ++   MP     S W  ++A    Y    L + A +  + M+  +
Sbjct: 685 TDAREVFDKMPSRDIVS-WNKIIAG---YAQNGLGQTAVEFAYQMQEQD 729



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 206/383 (53%), Gaps = 3/383 (0%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           TE +T  A LQ+C R+R     K  HA+++   +  D   SN+LIN Y KC  +  A +V
Sbjct: 25  TERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F EMP+R ++SWN++I  Y   G +++A  LF  M   G  P ++ T  S+L AC +  +
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP-NKITYISILTACYSPAE 143

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K++H   +KA   R+  V  +LL +Y KCG +  A +VF  +  R+ V++++M+  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q    +E L LF +    G+  ++ T  +++ A    + L +GK++H +  + G  S+
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   ++LV M  +CG V  A   F G  +++VV++N +I+  ++H  +VE    + +M+ 
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+  N  TY+S+L+ACS    +E GK      + +     +V   + +I +  R G + 
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGK-LIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 391 EAYDLILNMPFDATASMWGSLLA 413
           +A +L   MP     S W +++A
Sbjct: 383 KARELFYTMPKRDLIS-WNAIIA 404



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 193/364 (53%), Gaps = 3/364 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H   +  GLN+D      L+    +CG +  A++ F     R +V +N +I +   
Sbjct: 248 GKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQ 307

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +G   EA   +  M  +G    +  T  S+L AC+  + +   K +H    +     +V 
Sbjct: 308 HGHNVEAFEQYYRMRSDG-VALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQ 366

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G AL+ +YA+CG +  A  +F +MP+R+ ++W++++AG+ + E   EA+ L+++ Q  G
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++  + T   ++ ACA  +A   GK +H  + ++G  SN   A++L++MY +CG +++A 
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF G + ++V+ WN+MI+G ++H        LF++MQ   L P+  T+ SVLS C +  
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +E GK      + +  +  +V   + +I++  R G + +A ++  ++      S W ++
Sbjct: 547 ALELGKQIHG-RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAM 604

Query: 412 LASC 415
           +  C
Sbjct: 605 IGGC 608



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 215/410 (52%), Gaps = 13/410 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C        GK  H++II  G   D    N L++ Y KCG +  AR+VF  +
Sbjct: 130 TYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGI 189

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VS+NT++G Y      +E + LF  M  EG +P  + T  ++L A      + E 
Sbjct: 190 SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISP-DKVTYINLLDAFTTPSMLDEG 248

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H   ++  ++ ++ VGTAL+ +  +CG +  A + F+   +R+ V +++++A   Q+
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQH 308

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA   + R +  G+  N+ T  S++ AC+   AL  GK +H+ + + G  S++   
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MYA+CG +  A  +F  + +++++ WN +I+G++R     E M L+++MQ  G+ 
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P   T++ +LSAC++      GK   + +++   +  N    + ++++  R G + EA +
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQN 487

Query: 395 LILNMPFDATASM----WGSLLASCRNYRNLELAEIAAKQLFG--MEPDN 438
           +     F+ T +     W S++A    + + E A    +++    +EPDN
Sbjct: 488 V-----FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 144/254 (56%), Gaps = 3/254 (1%)

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G ++E V+   N  +   T     T  ++L  C  KR + E K++H   ++A +  ++F+
Sbjct: 8   GPDREDVS---NTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFL 64

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
              L+++Y KC  + DA +VF+ MP R+ ++W+S+++ + Q    ++A  LF   Q  G 
Sbjct: 65  SNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGF 124

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             N+ T  S++ AC   A L  GK++H+ + K G+  +    +SL+ MY KCG +  A  
Sbjct: 125 IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF+GI  ++VV +NTM+  +++ A   E + LF +M   G+ P++ TYI++L A +   M
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 353 VEKGKSYFDLMVKQ 366
           +++GK    L V++
Sbjct: 245 LDEGKRIHKLTVEE 258


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L + A     + GK  H   I  G       S  L + YSKCG +  AR +FD M
Sbjct: 250 TLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM 309

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            Q+ +VSWN+++  Y  NG  ++A+A+F  ML EG  P +  T+   L ACA   D+   
Sbjct: 310 DQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP-TGVTIMEALHACADLGDLERG 368

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H F  +  +  ++ V  +L+ +Y+KC  +  AS +F ++  R  V+W++M+ G+ QN
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL  F   + LG++ + FT+ SVI A A L+     K +H ++ ++    N+F  
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT 488

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMY+KCG +  A  +F  I +++V+ WN MI G+  H      + LF+KM++  + 
Sbjct: 489 TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ TY+SV+SACSH G+V++G  +F  M + + + P++ HY  M+D+LGRAG I EA+D
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWD 608

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I NMP     +++G++L +C+ ++N+E+ E AAK+LF + PD  G H+LL+NIYA+  +
Sbjct: 609 FIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSK 668

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W +VA  RK +    +KK    S VE++        G   HP+   IY+ LE+LV E+K 
Sbjct: 669 WSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKA 728

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+T   L DVED  +++LL  HSEKLA+ FGL+   PG  I + KNLR+CGDCH+ 
Sbjct: 729 AGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNA 787

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S + GRE IVRD+ RFHHF NG CSC D+W
Sbjct: 788 TKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 203/373 (54%), Gaps = 3/373 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C       RGK  H ++I      +      ++N Y+KC  I  A K+FD MP+R +
Sbjct: 154 LKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWNTII  ++ NG  ++A+ L + M  EG+ P S  T+ +VL A A    +   K +H 
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDS-ITLVTVLPAAADVGLLMVGKSIHG 272

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +A++A   + V + TAL D+Y+KCG +  A  +F+ M ++  V+W+SM+ G+VQN   E+
Sbjct: 273 YAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEK 332

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ +F +    G++    TI   + ACA L  L +GK VH  + +   GS++   +SL+ 
Sbjct: 333 AIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLIS 392

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KC  V  A  +F+ +  +  V WN MI G++++ R  E +  F +M+  G+ P+  T
Sbjct: 393 MYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFT 452

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            +SV+ A + + +    K    L+++   +  N+F  + ++D+  + G IH A  L  +M
Sbjct: 453 MVSVIPALAELSVTRHAKWIHGLIIRS-CLDKNIFVTTALVDMYSKCGAIHMARKL-FDM 510

Query: 400 PFDATASMWGSLL 412
             D     W +++
Sbjct: 511 ISDRHVITWNAMI 523



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 202/381 (53%), Gaps = 3/381 (0%)

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           +I  GL N+ L    L++ +SK G I+ A +VF+ +  +    ++T++  Y  N   + A
Sbjct: 72  VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           +A    M  +   P   +  + +L  C    D+   K++H   +  +   NVF  T +++
Sbjct: 132 LAFLCRMRYDDVKPVV-YNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVN 190

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +YAKC  I DA ++F+ MPER+ V+W++++AGF QN   ++AL L  R Q  G   +  T
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + +V+ A A +  L+ GK +H    + GF   +  +++L DMY+KCG V  A  +F G++
Sbjct: 251 LVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           +K VV WN+M+ G+ ++    + + +FEKM + G+ P   T +  L AC+ +G +E+GK 
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGK- 369

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
           +    V Q N+  ++   + +I +  +   +  A D+  N+      S    +L   +N 
Sbjct: 370 FVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNG 429

Query: 419 RNLE-LAEIAAKQLFGMEPDN 438
           R  E L   +  +  GM+PD+
Sbjct: 430 RVSEALNCFSEMKSLGMKPDS 450



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 118/206 (57%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E  Q+    +K  +       T L+ +++K G I++A+RVFE + ++ +  + +M+ G+ 
Sbjct: 64  ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA 123

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +N   E AL    R +   ++   +  + ++  C   A L +GK++H  L    F +N+F
Sbjct: 124 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVF 183

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           A + +V+MYAKC  + DAY +F  + E+++V WNT+I+GFS++  + + + L  +MQ  G
Sbjct: 184 AMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG 243

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKS 358
             P+  T ++VL A + +G++  GKS
Sbjct: 244 QRPDSITLVTVLPAAADVGLLMVGKS 269


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/564 (43%), Positives = 344/564 (60%), Gaps = 12/564 (2%)

Query: 47  RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           R+  +G   H ++I +G     L  + LINFYSK  L   + K+FD  P +   +W+++I
Sbjct: 21  RSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVI 80

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
            S+  N     A+  F  MLR G  P  + T+ +   + AA   +     LH  +LK A 
Sbjct: 81  SSFAQNDLPLPALRFFRRMLRHGLLP-DDHTLPTAAKSVAALSSLPLALSLHALSLKTAH 139

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
             +VFVG++L+D YAKCG ++ A +VF+ MP +N V+WS M+ G+ Q  L EEAL LF+R
Sbjct: 140 HHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKR 199

Query: 227 A--QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           A  Q   +  N FT+SSV+  C+       GKQVH +  KT F S+ F ASSL+ +Y+KC
Sbjct: 200 ALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKC 259

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           G V   Y VF  ++ +N+ +WN M+   ++HA +     LFE+M++ G+ PN  T++ +L
Sbjct: 260 GVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLL 319

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            ACSH G+VEKG+  F LM K+H + P   HY+ ++D+LGRAG + EA  +I  MP   T
Sbjct: 320 YACSHAGLVEKGEHCFGLM-KEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPT 378

Query: 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
            S+WG+LL  CR + N ELA   A ++F M   ++G  +LLSN YAA  RWEE ARARK+
Sbjct: 379 ESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKM 438

Query: 465 IRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHD 516
           +RD  +KKE   SWVE          G R+H +  EIY KLE+L EEM K GY  +T   
Sbjct: 439 MRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFV 498

Query: 517 LHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGR 576
           L +V+   K + + +HSE+LA+ FGL+   P  PIR+MKNLR+CGDCH+ +KF S+  GR
Sbjct: 499 LKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGR 558

Query: 577 ETIVRDLNRFHHFTNGSCSCWDFW 600
             IVRD NRFH F +G C+C D+W
Sbjct: 559 VIIVRDNNRFHRFEDGKCTCGDYW 582



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 6/179 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L+ C+       GK  H        ++    ++ LI+ YSKCG++ G  KVF+E+
Sbjct: 213 TLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEV 272

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +  WN ++ +   +        LF  M R G  P +  T   +L AC+    V   
Sbjct: 273 KVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKP-NFITFLCLLYACSHAGLVE-- 329

Query: 155 KQLHVFAL--KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           K  H F L  +  ++        L+D+  + G + +A  V + MP +  E  W +++ G
Sbjct: 330 KGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTG 388


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/574 (42%), Positives = 349/574 (60%), Gaps = 15/574 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    ++ C+   A   GK  H  I   G        N L+N Y K  L+  A  +FDEM
Sbjct: 57  TYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEM 116

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSW T+I +Y+ N    +A+   I M REG  P + FT SSVL AC    ++   
Sbjct: 117 PERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRP-NMFTYSSVLRACDGLPNL--- 171

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH   +K  ++ +VFV +AL+DVY+K   + +A  VF+ MP R+ V W+S++ GF QN
Sbjct: 172 RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQN 231

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL LF+R +  G   +Q T++SV+ AC GLA L  G+QVH  + K  F  ++   
Sbjct: 232 SDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILN 289

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMY KCG + DA   FS + EK+V+ W+TM++G +++  S + + LFE M+++G  
Sbjct: 290 NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSR 349

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T + VL ACSH G+VEKG  YF  M K   V P   HY C+ID+LGRAG + EA  
Sbjct: 350 PNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVK 409

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI  M  +  +  W +LL +CR +RN++LA  AAK++  +EP++AG ++LLSNIYA  +R
Sbjct: 410 LIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQR 469

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WE+VA  RK + +  ++K    SW+E+         G  +HP+I EI  +L  L+E +  
Sbjct: 470 WEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMG 529

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY P+T   L D+E  +K++ L +HSEKLA+ FGLM L     +RI KNLRICGDCH F
Sbjct: 530 VGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVF 589

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  SR+  R  ++RD  R+HHF +G CSC D+W
Sbjct: 590 AKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 28/195 (14%)

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           G+  +  T S +I  C+   A+ +GK+VH  + CK G+   MF  ++L++MY K   + +
Sbjct: 50  GVFADAITYSELIKCCSARGAVQEGKRVHEHIFCK-GYEPKMFVVNTLLNMYVKFNLLEE 108

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSR--HARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
           A  +F  + E+NVV W TMIS +S   + ++++ +IL   M + G+ PN  TY SVL AC
Sbjct: 109 AEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLIL---MFREGVRPNMFTYSSVLRAC 165

Query: 348 S--------HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
                    H G+++ G            +  +VF  S +ID+  +   +  A  +   M
Sbjct: 166 DGLPNLRQLHCGIIKTG------------LESDVFVRSALIDVYSKWSDLDNALGVFDEM 213

Query: 400 PFDATASMWGSLLAS 414
           P      +W S++  
Sbjct: 214 P-TRDLVVWNSIIGG 227


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 357/603 (59%), Gaps = 21/603 (3%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           ++FSS    S   N      ST    ++SC+       G+  H + +  G   D   S+ 
Sbjct: 138 RAFSSMRKLSLKPNR-----STFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSA 192

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE----- 128
           L++ YSKCG +  AR +FDE+  R IVSW ++I  Y  N     A+ LF   L E     
Sbjct: 193 LVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSE 252

Query: 129 --GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
             G+       + SVL AC+   +    + +H F +K   + ++ V   L+D YAKCG +
Sbjct: 253 GDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGEL 312

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICA 245
             + RVF+ M ER+ ++W+S++A + QN +  E++ +F R    G + YN  T+S+V+ A
Sbjct: 313 GVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLA 372

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA   +   GK +H  + K G  SN+F  +S++DMY KCG V  A   F  + EKNV  W
Sbjct: 373 CAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSW 432

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           + M++G+  H  + E + +F +M  AG+ PN  T++SVL+ACSH G++E+G  +F  M  
Sbjct: 433 SAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSH 492

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
           + +V P V HY CM+D+LGRAG + EA+DLI  M       +WG+LL +CR ++N++L E
Sbjct: 493 EFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGE 552

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK- 484
           I+A++LF ++P N G ++LLSNIYA   RWE+V R R L+++S + K    S V+IKG+ 
Sbjct: 553 ISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRV 612

Query: 485 -------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                  R HP+  +IY  LEKL  +++++GY P+    LHDV    K+ +L  HSEKLA
Sbjct: 613 HVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLA 672

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FG+M   PG  I I+KNLR+CGDCH+ +KF S+I  RE +VRD  RFHHF +G CSC 
Sbjct: 673 VAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCG 732

Query: 598 DFW 600
           D+W
Sbjct: 733 DYW 735



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 185/382 (48%), Gaps = 20/382 (5%)

Query: 13  YKSFSSSAIASASANANATELSTLQATLQSCAR--ERAPVRGKVCHAKIIGMGLNNDTLT 70
           +K F      S        +   + + L +C+R  E++   G   H  +I  G   D   
Sbjct: 241 FKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG--VHGFLIKRGFEGDLGV 298

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
            N L++ Y+KCG +  +R+VFD M +R ++SWN+II  Y  NG   E++ +F  M+++G+
Sbjct: 299 ENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 358

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
             Y+  T+S+VL ACA        K +H   +K  ++ NVFVGT+++D+Y KCG +  A 
Sbjct: 359 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 418

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
           + F+ M E+N  +WS+MVAG+  +   +EAL +F    + G++ N  T  SV+ AC+   
Sbjct: 419 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 478

Query: 251 ALIQGKQ-VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTM 308
            L +G     A+  +      +     +VD+  + G + +A+ +  G++   + V+W  +
Sbjct: 479 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 538

Query: 309 ISGFSRHAR----SVEVMILFEKMQQAGLHPNEQTYISVLSAC-SHIGMVEKGKSYFDLM 363
           +     H       +    LFE      L P    Y  +LS   +  G  E  +    LM
Sbjct: 539 LGACRMHKNVDLGEISARKLFE------LDPKNCGYYVLLSNIYADAGRWEDVERMRILM 592

Query: 364 VKQHNVLPNVFHYSCMIDILGR 385
                V P  F    ++DI GR
Sbjct: 593 KNSGLVKPPGF---SLVDIKGR 611



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 8/159 (5%)

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N  +W+S++A   ++    EAL  F   + L L+ N+ T    I +C+ L  L  G+Q H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
                 GF  ++F +S+LVDMY+KCG + DA  +F  I  +N+V W +MI+G+ ++  + 
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235

Query: 320 EVMILFEK--MQQAGLHPNEQT------YISVLSACSHI 350
             ++LF++  ++++G   + +        +SVLSACS +
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRV 274



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           +++ NV  WN++I+  +R   SVE +  F  M++  L PN  T+   + +CS +  +  G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 357 KSYFDLMVKQHNVL----PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +        Q  ++    P++F  S ++D+  + G + +A  L   +      S W S++
Sbjct: 172 RQ-----AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS-WTSMI 225

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
                  +   A +  K+    E  + G+
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGD 254


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 355/571 (62%), Gaps = 10/571 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + LQ+CA       G+  H   +   ++  T   N L++ Y+KCG++ GA  VFD M  R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +V+W ++I +Y   G   EA+ LF  M REG +P   FT+++VL ACA    +   K +
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSP-DIFTITTVLHACACNGSLENGKDV 121

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H +  +  M  N+FV  AL+D+YAKCG + DA+ VF  MP ++ ++W++M+ G+ +N L 
Sbjct: 122 HNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLP 181

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EAL LF    VL ++ +  T++ ++ ACA LA+L +GK+VH  + + GF S+   A++L
Sbjct: 182 NEALSLFGD-MVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANAL 240

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           VDMY KCG  V A  +F  I  K+++ W  MI+G+  H      +  F +M+QAG+ P+E
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            ++IS+L ACSH G++++G  +F++M  + NV P + HY+C++D+L R+G +  AY  I 
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +MP +  A++WG+LL+ CR + +++LAE  A+ +F +EP+N G ++LL+N YA   +WEE
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEE 420

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           V + R+ I    +KK    SW+E+K        G  +HP+  +I   L++L  +MK+ GY
Sbjct: 421 VKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGY 480

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+T + L + +  +K+  L  HSEKLA+ FG++ L P   IR+ KNLR+CGDCH   KF
Sbjct: 481 FPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKF 540

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S+  GRE ++RD NRFHHF +G C C  FW
Sbjct: 541 ISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 151/290 (52%), Gaps = 8/290 (2%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           + ++ T+   L +CA   +   GK  H  I    + ++    N L++ Y+KCG +  A  
Sbjct: 96  SPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANS 155

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF EMP + I+SWNT+IG Y+ N    EA++LF +M+ E K   +  T++ +L ACA+  
Sbjct: 156 VFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGT--TLACILPACASLA 213

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            +   K++H   L+     +  V  AL+D+Y KCG+   A  +F+ +P ++ +TW+ M+A
Sbjct: 214 SLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIA 273

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL---CKTG 266
           G+  +     A+  F   +  G+E ++ +  S++ AC+    L +G +   V+   C   
Sbjct: 274 GYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVK 333

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
                +A   +VD+ A+ G +  AY F+ S   E +  +W  ++SG   H
Sbjct: 334 PKLEHYAC--IVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIH 381


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/577 (40%), Positives = 358/577 (62%), Gaps = 33/577 (5%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGL----------------------ISGARKVFDE 93
           HA +I +G + D  T+N L+N YSK                         I   RK+FD 
Sbjct: 99  HAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDR 158

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R +VSWNT+I     NG  +EA+ +   M +E   P S FT+SS+L       +V +
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDS-FTLSSILPIFTEHANVTK 217

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K++H +A++   D++VF+G++L+D+YAKC  +  +   F  +  R+ ++W+S++AG VQ
Sbjct: 218 GKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQ 277

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N  +++ L  FRR     ++  Q + SSVI ACA L AL  GKQ+HA + + GF  N F 
Sbjct: 278 NGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFI 337

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           ASSL+DMYAKCG +  A ++F+ IE  ++++V W  +I G + H  +++ + LFE+M   
Sbjct: 338 ASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVD 397

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P    +++VL+ACSH G+V++G  YF+ M +   V P + HY+ + D+LGRAG + E
Sbjct: 398 GVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEE 457

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AYD I NM  + T S+W +LLA+CR ++N+ELAE    ++  ++P N G H+++SNIY+A
Sbjct: 458 AYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSA 517

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEE 503
            +RW + A+ R  +R + +KK  + SW+E+         G ++HP   +I   L  L+E+
Sbjct: 518 AQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQ 577

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M+K GY  +T   LHDV++  K++LL  HSE+LA+ FG++    G  IR++KN+R+C DC
Sbjct: 578 MEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDC 637

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+ +KF ++I GRE IVRD +RFHHF NGSCSC D+W
Sbjct: 638 HTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 5/285 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L          +GK  H   I  G + D    + LI+ Y+KC  +  +   F  +
Sbjct: 201 TLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLL 260

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  +SWN+II     NGR  + +  F  ML+E   P  + + SSV+ ACA    +   
Sbjct: 261 SNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPM-QVSFSSVIPACAHLTALNLG 319

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE--SMPERNEVTWSSMVAGFV 212
           KQLH + ++   D N F+ ++LLD+YAKCG I  A  +F    M +R+ V+W++++ G  
Sbjct: 320 KQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCA 379

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNM 271
            +    +A+ LF    V G++       +V+ AC+    + +G K  +++    G    +
Sbjct: 380 MHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGL 439

Query: 272 FAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
              +++ D+  + G + +AY F+ +  EE    +W+T+++    H
Sbjct: 440 EHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAH 484


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/573 (42%), Positives = 347/573 (60%), Gaps = 13/573 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           TL S    R+  +G   HA II +GL    L S+ LINFYSK  L   + ++F + P + 
Sbjct: 26  TLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKS 85

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
             +W+++I S+  N     ++  F  MLR+G  P  +    S   +C     +   K LH
Sbjct: 86  ATTWSSVISSFAQNDLPLLSLNYFRLMLRQG-VPPDDHIFPSATKSCGILSSLPVAKMLH 144

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            FALK A   ++FVG++++D+YAKCG I  A  VF+ MP RN V+WS ++ G+VQ    +
Sbjct: 145 CFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDD 204

Query: 219 EALILFRRAQVL--GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           E+L LF+R  V       N FT+SSV+  C G   L  G+ +H +  KT F S+ F ASS
Sbjct: 205 ESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASS 264

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-AGLHP 335
           L+ +Y+KCG V +AY VF  +  +N+ +WN M+   ++HA + +   LF+KM+   G+  
Sbjct: 265 LISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKA 324

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N  T++ VL ACSH G+VEKGK YF+LM K + + P   HYS M+D+LGRAG +++A  L
Sbjct: 325 NFITFLCVLYACSHAGLVEKGKYYFELM-KDYGIEPGTQHYSTMVDLLGRAGKLNDAVKL 383

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           I  MP + T S+WG+LL  CR + N +LA   A ++  +   ++G H++LSN YAA  RW
Sbjct: 384 IEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRW 443

Query: 456 EEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKL 507
           EE A+ARK++RD  +KKE   SWVE          G R+H +  EIY KL++L EEM K 
Sbjct: 444 EEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKA 503

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY  +T   L +V+   K   + +HSE+LA+ FG +    G PIR+MKNLR+CGDCH+ +
Sbjct: 504 GYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAI 563

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KF S+  GR  IVRD NRFH F +G C+C D+W
Sbjct: 564 KFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 136/318 (42%), Gaps = 46/318 (14%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L+ C        G++ H        ++    ++ LI+ YSKCG++  A  VF+E+
Sbjct: 226 TLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEV 285

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +  WN ++ +   +    +   LF  M   G    +  T   VL AC+    V + 
Sbjct: 286 TVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKG 345

Query: 155 KQLHVFALKAAMDRNVFVGT----ALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           K    +  +   D  +  GT     ++D+  + G ++DA ++ E MP E  E  W +++ 
Sbjct: 346 K----YYFELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLT 401

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G   +   + A  +  R   LG      ++SS      GL  ++               S
Sbjct: 402 GCRLHGNTKLASYVADRVSELG------SVSS------GLHVML---------------S 434

Query: 270 NMFAASSLVDMYAKCGCVVDAYFV-----FSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           N +AA+   +  AK   ++    +      S +EE N +  +T  +G   HA+SVE+   
Sbjct: 435 NAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRI--HTFAAGDRSHAKSVEI--- 489

Query: 325 FEKMQQAGLHPNEQTYIS 342
           ++K+ + G   ++  Y++
Sbjct: 490 YDKLDELGEEMDKAGYVA 507


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 359/569 (63%), Gaps = 10/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           + +CA+ +     +  HA +       D    N LI+ Y KC  +  AR VFD+M ++ +
Sbjct: 58  ITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDM 117

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW ++I  Y  N    EA+ L   ML+ G+   + FT +S+L A  A  D    +Q+H 
Sbjct: 118 VSWTSLIAGYAQNDMPVEAIGLLPGMLK-GRFKPNGFTFASLLKAAGAYADSGTGRQIHA 176

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+K     +V+VG+ALLD+YA+CG +  A+ VF+ +  +N V+W+++++GF +    E 
Sbjct: 177 LAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGES 236

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL+ F      G E   FT SSV  + A L AL QGK VHA + K+      F  ++L+D
Sbjct: 237 ALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLD 296

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAK G ++DA  VF  ++ K++V WN+M++ F+++    E +  FE+M+++G++ N+ T
Sbjct: 297 MYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQIT 356

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++ +L+ACSH G+V++GK YF++M K++++ P + HY  ++ +LGRAGL++ A   I  M
Sbjct: 357 FLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKM 415

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA++WG+LLA+CR ++N ++ + AA  +F ++PD++G  +LL NIYA+  +W+  A
Sbjct: 416 PMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAA 475

Query: 460 RARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R R +++ + VKKE + SWVE        +     HP+  EIY    ++ ++++K GY P
Sbjct: 476 RVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVP 535

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           + ++ L  V+D  K+  L +HSEKLAL F L+ +  G  IRIMKN+RICGDCHS  K+ S
Sbjct: 536 DMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYIS 595

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++ GRE +VRD NRFHHF++GSCSC D+W
Sbjct: 596 KVFGREIVVRDTNRFHHFSSGSCSCGDYW 624


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/574 (39%), Positives = 349/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G+  H+  I  G  +D   S +LI+ YSK   +  ARK+ + +
Sbjct: 348 TYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEML 407

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW ++I  Y  +   +EA+A F  M   G  P     ++S   ACA  + + + 
Sbjct: 408 EKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP-DNIGLASAASACAGIKAMRQG 466

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H     +    ++ +   L+++YA+CG   +A  +F  +  ++E+TW+ +++GF Q+
Sbjct: 467 LQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQS 526

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            LYE+AL++F +    G +YN FT  S I A A LA + QGKQVH    KTG  S    A
Sbjct: 527 RLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA 586

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y KCG + DA  +FS +  +N V WNT+I+  S+H R +E + LF++M+Q GL 
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLK 646

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VL+ACSH+G+VE+G SYF  M   + + P   HY+C++DILGRAG +  A  
Sbjct: 647 PNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARR 706

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            +  MP  A A +W +LL++C+ ++N+E+ E+AAK L  +EP ++ +++LLSN YA   +
Sbjct: 707 FVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGK 766

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W    + RK+++D  ++KE  +SW+E+K        G R HP   +IY  L +L + + K
Sbjct: 767 WANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSK 826

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GYK E  +  H+ E  +K      HSEKLA+ FGLM L P +P+R++KNLR+C DCHS+
Sbjct: 827 IGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSW 886

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MKF S +  RE ++RD+ RFHHF +GSCSC D+W
Sbjct: 887 MKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 223/407 (54%), Gaps = 7/407 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA      +GK  H+ ++  G++ D +T   L++ Y KCG I  A  +F+  
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN ++ +Y       ++  +F  M   G  P ++FT   +L  C     +   
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP-NKFTYPCILRTCTCTGQIELG 365

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  ++K   + +++V   L+D+Y+K   +  A ++ E + +R+ V+W+SM+AG+VQ+
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  EEAL  F+  Q  G+  +   ++S   ACAG+ A+ QG Q+HA +  +G+ +++   
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIW 485

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV++YA+CG   +A+ +F  I+ K+ + WN +ISGF +     + +++F KM QAG  
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAK 545

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHEAY 393
            N  T+IS +SA +++  +++GK      VK  H     V   + +I + G+ G I +A 
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEV--ANALISLYGKCGSIEDAK 603

Query: 394 DLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAK-QLFGMEPDN 438
            +   M      S W +++ SC  + R LE  ++  + +  G++P++
Sbjct: 604 MIFSEMSLRNEVS-WNTIITSCSQHGRGLEALDLFDQMKQEGLKPND 649



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 216/426 (50%), Gaps = 8/426 (1%)

Query: 19  SAIASASANANATELSTLQATLQSCARE--RAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
           S +A+ +++  A   + L   LQ+C     R P+  ++ HA  +  GL  D L  N+LI+
Sbjct: 28  SLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEI-HATSVVRGLGADRLIGNLLID 86

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y+K GL+  AR+VF E+  R  VSW  ++  Y   G  +EA  L+  M      P + +
Sbjct: 87  LYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIP-TPY 145

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            +SSVL AC   +   + + +H    K A     FVG AL+ +Y   G    A RVF  M
Sbjct: 146 VLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDM 205

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
              + VT++++++G  Q    E AL +F   Q+ GL  +  T++S++ ACA +  L +GK
Sbjct: 206 LFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           Q+H+ L K G   +     SL+D+Y KCG +  A+ +F+  +  NVVLWN M+  + + +
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              +   +F +MQ  G+HPN+ TY  +L  C+  G +E G+    L +K +    +++  
Sbjct: 326 DLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIK-NGFESDMYVS 384

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE--LAEIAAKQLFGM 434
             +ID+  +   + +A   IL M        W S++A    +   E  LA     Q  G+
Sbjct: 385 GVLIDMYSKYRCLDKARK-ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV 443

Query: 435 EPDNAG 440
            PDN G
Sbjct: 444 WPDNIG 449


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/571 (39%), Positives = 346/571 (60%), Gaps = 9/571 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L  C+   A   GK  HA+ +  GL +D   +  LI  Y  CG I GAR+VFD+M  R
Sbjct: 268 SILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR 327

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSW  +I  Y  N   ++A  LF  M  EG  P    T   ++ ACA+  D+   +++
Sbjct: 328 DVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQP-DRITYIHIINACASSADLSLAREI 386

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   ++A    ++ V TAL+ +YAKCG I DA +VF++M  R+ V+WS+M+  +V+N   
Sbjct: 387 HSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCG 446

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           EEA   F   +   +E +  T  +++ AC  L AL  G +++    K    S++   ++L
Sbjct: 447 EEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNAL 506

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           ++M  K G +  A ++F  + +++VV WN MI G+S H  + E + LF++M +    PN 
Sbjct: 507 INMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNS 566

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VLSACS  G VE+G+ +F  ++    ++P +  Y CM+D+LGRAG + EA  LI 
Sbjct: 567 VTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLIN 626

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            MP    +S+W +LLA+CR Y NL++AE AA++    EP +   ++ LS++YAA   WE 
Sbjct: 627 RMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWEN 686

Query: 458 VARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGY 509
           VA+ RK++    V+KE+  +W+E++GK        R+HP+  EIY++L +L+  +K+ GY
Sbjct: 687 VAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGY 746

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P T++ LH+V +  K+E + +HSEKLA+ +G++ L  G PIRI KNLR+CGDCHS  KF
Sbjct: 747 IPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKF 806

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++ GRE I RD +RFHHF NG CSC D+W
Sbjct: 807 ISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 197/365 (53%), Gaps = 2/365 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C+       GK  HA++I +G  +D      L++ Y K G + GAR+VFD +
Sbjct: 164 TFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL 223

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R + ++N +IG Y  +G  ++A  LF  M +EG  P +  +  S+L  C+    +   
Sbjct: 224 YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKP-NRISFLSILDGCSTPEALAWG 282

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +   +  +V V TAL+ +Y  CG I  A RVF+ M  R+ V+W+ M+ G+ +N
Sbjct: 283 KAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAEN 342

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+A  LF   Q  G++ ++ T   +I ACA  A L   +++H+ + + GFG+++   
Sbjct: 343 SNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVD 402

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV MYAKCG + DA  VF  +  ++VV W+ MI  +  +    E    F  M++  + 
Sbjct: 403 TALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVE 462

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  TYI++L+AC H+G ++ G   +   +K  +++ ++   + +I++  + G I  A  
Sbjct: 463 PDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIERARY 521

Query: 395 LILNM 399
           +  NM
Sbjct: 522 IFENM 526



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 165/322 (51%), Gaps = 1/322 (0%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
            +N  +  T     Q C   R    GK     II  G   +    N LI  +S CG +  
Sbjct: 55  GSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLE 114

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           AR+ FD +  + +V+WN II  Y   G  +EA ALF  M+ E   P S  T   VL AC+
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEP-SIITFLIVLDACS 173

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           +   +   K+ H   +K     +  +GTAL+ +Y K G +  A +VF+ + +R+  T++ 
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+ G+ ++   E+A  LF R Q  G + N+ +  S++  C+   AL  GK VHA    TG
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
              ++  A++L+ MY  CG +  A  VF  ++ ++VV W  MI G++ ++   +   LF 
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 327 KMQQAGLHPNEQTYISVLSACS 348
            MQ+ G+ P+  TYI +++AC+
Sbjct: 354 TMQEEGIQPDRITYIHIINACA 375



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 123/236 (52%)

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           ++ L EG       T   +   C   RD    KQ+    +++    N++    L+ +++ 
Sbjct: 49  LHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSI 108

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG + +A + F+S+  +  VTW++++AG+ Q    +EA  LFR+     +E +  T   V
Sbjct: 109 CGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIV 168

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + AC+  A L  GK+ HA + K GF S+    ++LV MY K G +  A  VF G+ +++V
Sbjct: 169 LDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDV 228

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
             +N MI G+++     +   LF +MQQ G  PN  +++S+L  CS    +  GK+
Sbjct: 229 STFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKA 284



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 63/111 (56%)

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           GKQV   + ++G   N++  ++L+ +++ CG +++A   F  +E K VV WN +I+G+++
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
                E   LF +M    + P+  T++ VL ACS    ++ GK +   ++K
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIK 190


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 352/569 (61%), Gaps = 9/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +C    A   GK  H+++   G  +D    N LI+ YS+CG I  AR VFD+M ++ +
Sbjct: 335 LNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDV 394

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +SW  +IG    +G   EA+ ++  M + G  P +  T +S+L AC++   +   +++H 
Sbjct: 395 ISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEP-NRVTYTSILNACSSPAALEWGRRIHQ 453

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             ++A +  +  VG  L+++Y+ CG + DA +VF+ M +R+ V +++M+ G+  + L +E
Sbjct: 454 QVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKE 513

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF R Q  GL+ ++ T  +++ ACA   +L   +++H ++ K GF S+    ++LV 
Sbjct: 514 ALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVS 573

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
            YAKCG   DA  VF  + ++NV+ WN +I G ++H R  + + LFE+M+  G+ P+  T
Sbjct: 574 TYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVT 633

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++S+LSACSH G++E+G+ YF  M +   ++P + HY CM+D+LGRAG + EA  LI  M
Sbjct: 634 FVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTM 693

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           PF A   +WG+LL +CR + N+ +AE AA+    ++ DNA  ++ LS++YAA   W+  A
Sbjct: 694 PFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAA 753

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           + RKL+    V KE  +SW+++  K        R+HP+  +IY++L++L   MK  GY P
Sbjct: 754 KLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVP 813

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T   +HDV++  K+  + HHSE+LA+ +GL+   PG  I I KNLR+C DCH+  KF S
Sbjct: 814 DTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFIS 873

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I  RE I RD+NRFHHF +G CSC D+W
Sbjct: 874 KIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 221/411 (53%), Gaps = 7/411 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A + +T+ + L SC    A   G+  H + +  GL  D   +N ++N Y+KCG I  AR+
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD+M ++ +VSW   IG Y   GR + A  +F  M +EG  P +  T  SVL A ++  
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVP-NRITYISVLNAFSSPA 241

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            +   K +H   L A  + +  VGTAL+ +YAKCG   D  +VFE +  R+ + W++M+ 
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G  +   +EEA  ++ + Q  G+  N+ T   ++ AC   AAL  GK++H+ + K GF S
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   ++L+ MY++CG + DA  VF  +  K+V+ W  MI G ++     E + ++++MQ
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           QAG+ PN  TY S+L+ACS    +E G+     +V +  +  +    + ++++    G +
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSV 480

Query: 390 HEA---YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
            +A   +D ++     A  +M G   A       L+L +   ++  G++PD
Sbjct: 481 KDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE--GLKPD 529



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 185/314 (58%), Gaps = 1/314 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H++I+  G  +DT     L+  Y+KCG     R+VF+++  R +++WNT+IG    
Sbjct: 246 GKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 305

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G  +EA  ++  M REG  P ++ T   +L AC     +   K++H    KA    ++ 
Sbjct: 306 GGYWEEASEVYNQMQREGVMP-NKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  AL+ +Y++CG I DA  VF+ M  ++ ++W++M+ G  ++    EAL +++  Q  G
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +E N+ T +S++ AC+  AAL  G+++H  + + G  ++    ++LV+MY+ CG V DA 
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDAR 484

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + ++++V +N MI G++ H    E + LF+++Q+ GL P++ TYI++L+AC++ G
Sbjct: 485 QVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 544

Query: 352 MVEKGKSYFDLMVK 365
            +E  +    L+ K
Sbjct: 545 SLEWAREIHTLVRK 558



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 203/403 (50%), Gaps = 9/403 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QR 97
           L+ C   +  V G+  H  II      D  T N LIN Y +CG I  AR+V+ ++   +R
Sbjct: 30  LKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMER 89

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + SWN ++  Y   G  ++A+ L   M + G  P    T+ S L +C +   +   +++
Sbjct: 90  TVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP-DRTTIMSFLSSCKSPGALEWGREI 148

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A++A +  +V V   +L++YAKCG I +A  VF+ M +++ V+W+  + G+      
Sbjct: 149 HFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRS 208

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           E A  +F++ +  G+  N+ T  SV+ A +  AAL  GK VH+ +   G  S+    ++L
Sbjct: 209 ETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTAL 268

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           V MYAKCG   D   VF  +  ++++ WNTMI G +      E   ++ +MQ+ G+ PN+
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNK 328

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA---YD 394
            TY+ +L+AC +   +  GK     + K      ++   + +I +  R G I +A   +D
Sbjct: 329 ITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSRCGSIKDARLVFD 387

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
            ++     +  +M G L  S      L + +    Q  G+EP+
Sbjct: 388 KMVRKDVISWTAMIGGLAKSGFGAEALTVYQ--EMQQAGVEPN 428



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 2/246 (0%)

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
           E++     +  L++     +      +L  C   +D+   +Q+H   ++     + +   
Sbjct: 3   EKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVN 62

Query: 175 ALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           AL+++Y +CG I +A +V++ +   ER   +W++MV G++Q    E+AL L R+ Q  GL
Sbjct: 63  ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGL 122

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             ++ TI S + +C    AL  G+++H    + G   ++  A+ +++MYAKCG + +A  
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  +E+K+VV W   I G++   RS     +F+KM+Q G+ PN  TYISVL+A S    
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 353 VEKGKS 358
           ++ GK+
Sbjct: 243 LKWGKA 248


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/574 (40%), Positives = 347/574 (60%), Gaps = 11/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L + A  +A   G+  H      G  +    +N L++ Y KCG    AR VF  M
Sbjct: 248 TLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGM 307

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWNT+I     NG  +EA A F+ ML EG+ P +  T+  VL ACA   D+   
Sbjct: 308 RSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVP-TRVTMMGVLLACANLGDLERG 366

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H    K  +D NV V  +L+ +Y+KC  +  A+ +F ++ E+  VTW++M+ G+ QN
Sbjct: 367 WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQN 425

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EAL LF   Q  G++ + FT+  VI A A  +   Q K +H +  +    +N+F +
Sbjct: 426 GCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVS 485

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG +  A  +F  ++E++V+ WN MI G+  H    E + LF +MQ+  + 
Sbjct: 486 TALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVK 545

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++SV+SACSH G VE+G   F  M + + + P + HYS M+D+LGRAG + +A++
Sbjct: 546 PNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWN 605

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP     S+ G++L +C+ ++N+EL E AA++LF ++PD  G H+LL+NIYA+N  
Sbjct: 606 FIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSM 665

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++VA+ R  + D  + K    SWVE++        G  NHP   +IY+ LE L +E+K 
Sbjct: 666 WDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKA 725

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+ +  +HDVE+  K++LL  HSE+LA+ FGL+   PG  + I KNLR+CGDCH  
Sbjct: 726 AGYVPDPD-SIHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDT 784

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S + GRE IVRDL RFHHF NGSCSC D+W
Sbjct: 785 TKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 181/356 (50%), Gaps = 3/356 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ C       +G+  H  II  G  ++      +++ Y+KC  I  A K+F+ M  + +
Sbjct: 152 LQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDL 211

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW T++  Y  NG  + A+ L + M   G+ P S  T+ S+L A A  + +   + +H 
Sbjct: 212 VSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDS-VTLVSILPAVADMKALRIGRSIHG 270

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +A ++  +  V V  ALLD+Y KCG    A  VF+ M  +  V+W++M+ G  QN   EE
Sbjct: 271 YAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEE 330

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A   F +    G    + T+  V+ ACA L  L +G  VH +L K    SN+   +SL+ 
Sbjct: 331 AFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLIS 390

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KC  V  A  +F+ +E+ NV  WN MI G++++    E + LF  MQ  G+  +  T
Sbjct: 391 MYSKCKRVDIAASIFNNLEKTNVT-WNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFT 449

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            + V++A +   +  + K    L V+   +  NVF  + ++D+  + G I  A  L
Sbjct: 450 LVGVITALADFSVNRQAKWIHGLAVRA-CMDNNVFVSTALVDMYAKCGAIKTARKL 504



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 163/299 (54%), Gaps = 3/299 (1%)

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           II  G  N+ L    +I+ + K G  S A +VF+ +  +  V ++ ++  Y  N    +A
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 119 VALFINML-REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           +  F+ M+  E +    ++  + +L  C    D+ + +++H   +    + N+FV TA++
Sbjct: 130 LCFFLRMMCDEVRLVVGDY--ACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVM 187

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
            +YAKC  I +A ++FE M  ++ V+W+++VAG+ QN   + AL L  + Q  G + +  
Sbjct: 188 SLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSV 247

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T+ S++ A A + AL  G+ +H    ++GF S +   ++L+DMY KCG    A  VF G+
Sbjct: 248 TLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGM 307

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
             K VV WNTMI G +++  S E    F KM   G  P   T + VL AC+++G +E+G
Sbjct: 308 RSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 348/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G+  H+  I  G  +D   S +LI+ YSK G +  A+++ D +
Sbjct: 347 TYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMI 406

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +VSW ++I  Y  +   +EA+  F  M   G  P     ++S + ACA  + V + 
Sbjct: 407 EEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWP-DNIGLASAISACAGIKAVHQG 465

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H     +    +V +   L+ +YA+CG+  +A   FE++  +  +TW+ +++GF Q+
Sbjct: 466 SQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQS 525

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            LYEEAL +F +    G +YN FT  S I A A LA + QGKQ+HA + KTG+ S    +
Sbjct: 526 GLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEIS 585

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y KCG + DA   F  + ++N V WNT+I+  S+H R +E + LF++M+Q GL 
Sbjct: 586 NALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLK 645

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++ T++ VL+ACSH+G+VE+G  YF  M  +H + P   HY+C++DILGRAG +  A  
Sbjct: 646 PSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKR 705

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            +  MP  A + +W +LL++C+ ++NLE+ E AAK L  +EP ++ +++LLSN YA   +
Sbjct: 706 FVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGK 765

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W    + RK+++D  V+KE  +SW+E+K        G R HP   +IY+ L  L + + K
Sbjct: 766 WASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYK 825

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GYK E  H  H+ E   K      HSEKLA+ FGLM L   +P+R++KNLR+C DCH++
Sbjct: 826 IGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTW 885

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MKF S + GRE ++RD+ RFHHF NGSCSC D+W
Sbjct: 886 MKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 214/406 (52%), Gaps = 10/406 (2%)

Query: 40  LQSC--ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           L++C  +  R P+  ++ HAK I  GL+   +  N+LI+ Y+K G +  AR+VF+E+  R
Sbjct: 48  LRACRGSGRRWPLVPEI-HAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVR 106

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
             VSW  ++  Y  NG  +EAV L+  M R G  P + + +SS+L AC  K ++F+  +L
Sbjct: 107 DNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVP-TPYVLSSILSACT-KTELFQLGRL 164

Query: 158 -HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
            HV   K       FVG AL+ +Y +C     A RVF  M   + VT++++++G  Q   
Sbjct: 165 IHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGH 224

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            + AL +F   Q+ GL  +  TI+S++ AC+ +  L +GKQ+H+ L K G   +     S
Sbjct: 225 GDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGS 284

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+D+Y K G + +A  +F   +  NVVLWN M+  + +     +   +F +M  AG+ PN
Sbjct: 285 LLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPN 344

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + TY  +L  C+H G +  G+    L +K +    +++    +ID+  + G + +A   I
Sbjct: 345 KFTYPCMLRTCTHTGEIGLGEQIHSLTIK-NGFQSDMYVSGVLIDMYSKYGWLDKA-QRI 402

Query: 397 LNMPFDATASMWGSLLASCRNYRNLE--LAEIAAKQLFGMEPDNAG 440
           L+M  +     W S++A    +   +  L      Q  G+ PDN G
Sbjct: 403 LDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIG 448



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 215/408 (52%), Gaps = 9/408 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +C+      +GK  H+ ++  G++ D +    L++ Y K G I  A ++FD  
Sbjct: 246 TIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSG 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN ++ +Y       ++  +F  ML  G  P ++FT   +L  C    ++   
Sbjct: 306 DRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRP-NKFTYPCMLRTCTHTGEIGLG 364

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K     +++V   L+D+Y+K G +  A R+ + + E++ V+W+SM+AG+VQ+
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQH 424

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  +EAL  F+  Q  G+  +   ++S I ACAG+ A+ QG Q+HA +  +G+ +++   
Sbjct: 425 EFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIW 484

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + LV +YA+CG   +A+  F  IE K  + WN +ISGF++     E + +F KM QAG  
Sbjct: 485 NGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAK 544

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            N  T++S +SA +++  +++GK     ++K           + +I + G+ G I +A  
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEIS-NALISLYGKCGSIEDAKM 603

Query: 395 LILNMPFDATASMWGSLLASC----RNYRNLELAEIAAKQLFGMEPDN 438
               M      S W +++  C    R    L+L +   +Q  G++P +
Sbjct: 604 DFFEMTKRNEVS-WNTIITCCSQHGRGLEALDLFDQMKQQ--GLKPSD 648



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 189/359 (52%), Gaps = 2/359 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + L +C +      G++ H ++   G  ++T   N LI+ Y +C     A +VF +M
Sbjct: 145 VLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDM 204

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                V++NT+I  +   G    A+ +F  M   G +P S  T++S+L AC+A  D+ + 
Sbjct: 205 LYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDS-VTIASLLAACSAVGDLRKG 263

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQLH + LKA M  +  +  +LLD+Y K G I +A ++F+S    N V W+ M+  + Q 
Sbjct: 264 KQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQI 323

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +   ++  +F R    G+  N+FT   ++  C     +  G+Q+H++  K GF S+M+ +
Sbjct: 324 DDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVS 383

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             L+DMY+K G +  A  +   IEEK+VV W +MI+G+ +H    E +  F++MQ  G+ 
Sbjct: 384 GVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIW 443

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
           P+     S +SAC+ I  V +G S     V       +V  ++ ++ +  R G+  EA+
Sbjct: 444 PDNIGLASAISACAGIKAVHQG-SQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/574 (39%), Positives = 344/574 (59%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L + A     + GK  H   I  G       S  L + YSKCG +  AR +FD M
Sbjct: 250 TLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM 309

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            Q+ +VSWN+++  Y  NG  ++A+A+F  ML EG  P +  T+   L ACA   D+   
Sbjct: 310 DQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP-TGVTIMEALHACADLGDLERG 368

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H F  +  +  ++ V  +L+ +Y+KC  +  AS +F ++  R  V+W++M+ G+ QN
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL  F   + LG++ + FT+ SVI A A L+     K +H ++ ++    N+F  
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT 488

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMY+KCG +  A  +F  I +++V+ WN MI G+  H      + LF+KM++  + 
Sbjct: 489 TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ TY+SV+SACSH G+V++G  +F  M + + + P++ HY  M+D+LGRAG I EA+D
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWD 608

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I NMP     +++G+   +C+ ++N+E+ E AAK+LF + PD  G H+LL+NIYA+  +
Sbjct: 609 FIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSK 668

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W +VA  RK +    +KK    S VE++        G   HP+   IY+ LE+LV E+K 
Sbjct: 669 WSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKA 728

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+T   L DVED  +++LL  HSEKLA+ FGL+   PG  I + KNLR+CGDCH+ 
Sbjct: 729 AGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNA 787

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S + GRE IVRD+ RFHHF NG CSC D+W
Sbjct: 788 TKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 203/373 (54%), Gaps = 3/373 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C       RGK  H ++I      +      ++N Y+KC  I  A K+FD MP+R +
Sbjct: 154 LKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWNTII  ++ NG  ++A+ L + M  EG+ P S  T+ +VL A A    +   K +H 
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDS-ITLVTVLPAAADVGLLMVGKSIHG 272

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +A++A   + V + TAL D+Y+KCG +  A  +F+ M ++  V+W+SM+ G+VQN   E+
Sbjct: 273 YAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEK 332

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ +F +    G++    TI   + ACA L  L +GK VH  + +   GS++   +SL+ 
Sbjct: 333 AIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLIS 392

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KC  V  A  +F+ +  +  V WN MI G++++ R  E +  F +M+  G+ P+  T
Sbjct: 393 MYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFT 452

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            +SV+ A + + +    K    L+++   +  N+F  + ++D+  + G IH A  L  +M
Sbjct: 453 MVSVIPALAELSVTRHAKWIHGLIIRS-CLDKNIFVTTALVDMYSKCGAIHMARKL-FDM 510

Query: 400 PFDATASMWGSLL 412
             D     W +++
Sbjct: 511 ISDRHVITWNAMI 523



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 202/381 (53%), Gaps = 3/381 (0%)

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           +I  GL N+ L    L++ +SK G I+ A +VF+ +  +    ++T++  Y  N   + A
Sbjct: 72  VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           +A    M  +   P   +  + +L  C    D+   K++H   +  +   NVF  T +++
Sbjct: 132 LAFLCRMRYDDVKPVV-YNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVN 190

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +YAKC  I DA ++F+ MPER+ V+W++++AGF QN   ++AL L  R Q  G   +  T
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + +V+ A A +  L+ GK +H    + GF   +  +++L DMY+KCG V  A  +F G++
Sbjct: 251 LVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           +K VV WN+M+ G+ ++    + + +FEKM + G+ P   T +  L AC+ +G +E+GK 
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGK- 369

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
           +    V Q N+  ++   + +I +  +   +  A D+  N+      S    +L   +N 
Sbjct: 370 FVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNG 429

Query: 419 RNLE-LAEIAAKQLFGMEPDN 438
           R  E L   +  +  GM+PD+
Sbjct: 430 RVSEALNCFSEMKSLGMKPDS 450



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 118/206 (57%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E  Q+    +K  +       T L+ +++K G I++A+RVFE + ++ +  + +M+ G+ 
Sbjct: 64  ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA 123

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +N   E AL    R +   ++   +  + ++  C   A L +GK++H  L    F +N+F
Sbjct: 124 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVF 183

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           A + +V+MYAKC  + DAY +F  + E+++V WNT+I+GFS++  + + + L  +MQ  G
Sbjct: 184 AMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG 243

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKS 358
             P+  T ++VL A + +G++  GKS
Sbjct: 244 QRPDSITLVTVLPAAADVGLLMVGKS 269


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/569 (40%), Positives = 354/569 (62%), Gaps = 24/569 (4%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKC---------------GLISGARKVFDEMPQRCIV 100
           HA  + +GL++D   +N LIN Y+K                  I   +KVFD MP R +V
Sbjct: 133 HACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVV 192

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SWNT+I  +  NG   EA+ +   M + GK     FT+SS+L   A   DV + K++H +
Sbjct: 193 SWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGY 252

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           A++   D +VF+G++L+D+YAKC  +  + R F  +P ++ ++W+S++AG VQN  ++  
Sbjct: 253 AVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRG 312

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           L  FRR     ++    + SSVI ACA L AL  G+Q+H  + + GF  N F ASSLVDM
Sbjct: 313 LGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDM 372

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           YAKCG +  A +VF  I+++++V W  +I G + H  +++ + LFE M + G+ P    +
Sbjct: 373 YAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAF 432

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM- 399
           ++VL+ACSH G+V++G  YF+ M +   + P + HY+ + D+LGRAG + EAYD I NM 
Sbjct: 433 MAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMR 492

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
               T S+W  LLA+CR ++++ELAE    +L  ++ +N G ++L+SNIY+A +RW++ A
Sbjct: 493 GVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAA 552

Query: 460 RARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R R  +R   +KK  + SW+E+         G ++HP   +I   L+ L+E+M+K GY  
Sbjct: 553 RLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVI 612

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T   LHDV++  K+ELL +HSE+LA+ +G++    G  IR++KN+R+C DCH+ +KF +
Sbjct: 613 DTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFIT 672

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I GRE  VRD +RFHHF NGSCSC D+W
Sbjct: 673 KIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 158/311 (50%), Gaps = 24/311 (7%)

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           +W++II  YT++     + + F N +R    P +     S+L A    +       LH  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSF-NSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHAC 135

Query: 161 ALKAAMDRNVFVGTALLDVYAK---CGLISD------------ASRVFESMPERNEVTWS 205
            ++  +D ++++  AL++ YAK    G + D              +VF+ MP R+ V+W+
Sbjct: 136 TVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWN 195

Query: 206 SMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +++AGF QN +Y EAL + R     G L+ + FT+SS++   A    + +GK++H    +
Sbjct: 196 TVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVR 255

Query: 265 TGFGSNMFAASSLVDMYAKCG---CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
            GF  ++F  SSL+DMYAKC    C + A+++   +  K+ + WN++I+G  ++      
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECSLRAFYI---LPRKDAISWNSIIAGCVQNGEFDRG 312

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           +  F +M +  + P   ++ SV+ AC+H+  +  G+     +V+      N F  S ++D
Sbjct: 313 LGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRL-GFDDNEFIASSLVD 371

Query: 382 ILGRAGLIHEA 392
           +  + G I  A
Sbjct: 372 MYAKCGNIKMA 382



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 7/291 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L   A      +GK  H   +  G + D    + LI+ Y+KC  +  + + F  +
Sbjct: 229 TLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYIL 288

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++  +SWN+II     NG     +  F  ML+E   P +  + SSV+ ACA    +   
Sbjct: 289 PRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMA-VSFSSVIPACAHLTALSLG 347

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH   ++   D N F+ ++L+D+YAKCG I  A  VF+ + +R+ V W++++ G   +
Sbjct: 348 RQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMH 407

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFA 273
               +A+ LF      G+        +V+ AC+    + +G +  +++    G    +  
Sbjct: 408 GHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEH 467

Query: 274 ASSLVDMYAKCGCVVDAYFVFS---GIEEKNVVLWNTMISGFSRHARSVEV 321
            +++ D+  + G + +AY   S   G++    V W+ +++    H +SVE+
Sbjct: 468 YAAVADLLGRAGRLEEAYDFISNMRGVQPTGSV-WSILLAACRAH-KSVEL 516



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 18/228 (7%)

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           WSS++  +  + L   +   F   + L +  N+    S++ A   L        +HA   
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 264 KTGFGSNMFAASSLVDMYAK---CGCVVDAYF------------VFSGIEEKNVVLWNTM 308
           + G  S+++ A++L++ YAK    G V D +             VF  +  ++VV WNT+
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 309 ISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           I+GF+++   VE + +  +M + G L P+  T  S+L   +    V KGK      V+  
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN- 256

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
               +VF  S +ID+  +   +  +      +P     S W S++A C
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAIS-WNSIIAGC 303


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 354/576 (61%), Gaps = 15/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + ++SCA  R     K+   K +  G   D +    L+   SKC  +  A  +F  M
Sbjct: 297 TFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLM 356

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            + + +VSW  +I     NG   +AV LF  M REG  P + FT S++L        VF 
Sbjct: 357 EEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKP-NHFTYSAIL---TVHYPVF- 411

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             ++H   +K   +R+  VGTALLD Y K G   DA +VFE +  ++ + WS+M+AG+ Q
Sbjct: 412 VSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQ 471

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAG-LAALIQGKQVHAVLCKTGFGSNMF 272
               EEA  LF +    G++ N+FT SSVI ACA   AA  QGKQ HA   K    + + 
Sbjct: 472 TGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALC 531

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +S+LV MYAK G +  A+ VF   +E+++V WN+MISG+S+H ++ + + +F++MQ+  
Sbjct: 532 VSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRN 591

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  +  T+I V++AC+H G+VEKG+ YF+ M+  H++ P + HYSCMID+  RAG++ +A
Sbjct: 592 MDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKA 651

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
             +I  MPF   A++W +LL + R +RN+EL E+AA++L  ++P+++  ++LLSN+YAA 
Sbjct: 652 MGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAA 711

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
             W+E    RKL+   +VKKE   SW+E+K        G   HP   +IYSKL +L   +
Sbjct: 712 GNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRL 771

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K  GY+P+T++  HD+ED +K+ +L HHSE+LA+ FGL+   P +PI+I+KNLR+CGDCH
Sbjct: 772 KDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCH 831

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +F K  S +  R  +VRD NRFHHF +G CSC D+W
Sbjct: 832 NFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 158/266 (59%), Gaps = 3/266 (1%)

Query: 87  ARKVFDEMPQR--CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
           A  +FD++P R   +   N ++ SY+ + + +EA+ LF+++L     P  E T+S V   
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQP-DESTLSCVFNI 102

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           CA   D    +Q+H   +K  +  +V VGT+L+D+Y K   ++D  RVF+ M ERN V+W
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +S++AG+  N LY     LF + Q  G+  N++T+S+VI A      +  G QVHA++ K
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK 222

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            GF   +   +SL+ +Y++ G + DA  VF  +E ++ V WN+MI+G+ R+ + +EV  +
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHI 350
           F KMQ AG+ P   T+ SV+ +C+ +
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCASL 308



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 169/313 (53%), Gaps = 2/313 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL      CA       G+  H + +  GL +       L++ Y K   ++  R+VFDE
Sbjct: 94  STLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDE 153

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R +VSW +++  Y+ NG       LF  M  EG  P + +TVS+V+ A   +  V  
Sbjct: 154 MGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP-NRYTVSTVIAALVNEGVVGI 212

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             Q+H   +K   +  + V  +L+ +Y++ G++ DA  VF+ M  R+ VTW+SM+AG+V+
Sbjct: 213 GLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    E   +F + Q+ G++    T +SVI +CA L  L   K +     K+GF ++   
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            ++L+   +KC  + DA  +FS +EE KNVV W  MISG  ++  + + + LF +M++ G
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG 392

Query: 333 LHPNEQTYISVLS 345
           + PN  TY ++L+
Sbjct: 393 VKPNHFTYSAILT 405



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 130/252 (51%), Gaps = 6/252 (2%)

Query: 189 ASRVFESMPERNEV--TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           A  +F+ +P R       + ++  + +++  +EAL LF       L+ ++ T+S V   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           AG      G+QVH    K G   ++   +SLVDMY K   V D   VF  + E+NVV W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++++G+S +     V  LF +MQ  G+ PN  T  +V++A  + G+V  G     ++VK 
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK- 222

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLELAE 425
           H     +  ++ +I +  R G++ +A D+   M      + W S++A   RN ++LE+ E
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVT-WNSMIAGYVRNGQDLEVFE 281

Query: 426 IAAK-QLFGMEP 436
           I  K QL G++P
Sbjct: 282 IFNKMQLAGVKP 293


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/598 (39%), Positives = 368/598 (61%), Gaps = 20/598 (3%)

Query: 13  YKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
           +++F++  +A A         +T  + ++SCA  +     +V H K +  GL+ +     
Sbjct: 289 FETFNNMQLAGAKPTH-----ATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLT 343

Query: 73  ILINFYSKCGLISGARKVFDEMPQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
            L+   +KC  I  A  +F  M   + +VSW  +I  Y  NG   +AV LF  M REG  
Sbjct: 344 ALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVK 403

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P + FT S++L     +  VF   ++H   +K   +++  VGTALLD + K G ISDA +
Sbjct: 404 P-NHFTYSTIL---TVQHAVF-ISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVK 458

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC-AGLA 250
           VFE +  ++ + WS+M+AG+ Q    EEA  +F +    G++ N+FT  S+I AC A  A
Sbjct: 459 VFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTA 518

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           ++ QGKQ HA   K    + +  +SSLV +YAK G +  A+ +F   +E+++V WN+MIS
Sbjct: 519 SVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMIS 578

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           G+++H ++ + + +FE+MQ+  L  +  T+I V+SAC+H G+V KG++YF++M+  H++ 
Sbjct: 579 GYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHIN 638

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P + HYSCMID+  RAG++ +A D+I  MPF   A++W  +LA+ R +RN+EL ++AA++
Sbjct: 639 PTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEK 698

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-------- 482
           +  +EP ++  ++LLSNIYAA   W E    RKL+    VKKE   SW+E+K        
Sbjct: 699 IISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLA 758

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
           G  +HP    IYSKL +L   ++ +GY+P+T +  HD+ED +K+ +L HHSE+LA+ FGL
Sbjct: 759 GDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGL 818

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +   P +P++I+KNLR+CGDCHSF+K  S +  R  +VRD NRFHHF  G CSC D+W
Sbjct: 819 IATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 152/264 (57%), Gaps = 1/264 (0%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A+++FD+ P R +   N ++  Y+   + QEA+ LF+++ R G +P S +T+S VL  CA
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDS-YTMSCVLSVCA 113

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              +    +Q+H   +K  +  ++ VG +L+D+Y K G + D  RVF+ M +R+ V+W+S
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           ++ G+  N   ++   LF   QV G   + +T+S+VI A A   A+  G Q+HA++ K G
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLG 233

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           F +     +SL+ M +K G + DA  VF  +E K+ V WN+MI+G   + + +E    F 
Sbjct: 234 FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN 293

Query: 327 KMQQAGLHPNEQTYISVLSACSHI 350
            MQ AG  P   T+ SV+ +C+ +
Sbjct: 294 NMQLAGAKPTHATFASVIKSCASL 317



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 164/312 (52%), Gaps = 2/312 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L  CA       G+  H + +  GL +     N L++ Y+K G +   R+VFDEM
Sbjct: 104 TMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEM 163

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN+++  Y+ N    +   LF  M  EG  P   +TVS+V+ A A +  V   
Sbjct: 164 GDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRP-DYYTVSTVIAALANQGAVAIG 222

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H   +K   +    V  +L+ + +K G++ DA  VF++M  ++ V+W+SM+AG V N
Sbjct: 223 MQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVIN 282

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA   F   Q+ G +    T +SVI +CA L  L   + +H    K+G  +N    
Sbjct: 283 GQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVL 342

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           ++L+    KC  + DA+ +FS +   ++VV W  MISG+ ++  + + + LF  M++ G+
Sbjct: 343 TALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGV 402

Query: 334 HPNEQTYISVLS 345
            PN  TY ++L+
Sbjct: 403 KPNHFTYSTILT 414



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 131/253 (51%), Gaps = 4/253 (1%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A ++F+  P R+    + ++  + + +  +EAL LF      GL  + +T+S V+  CAG
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
                 G+QVH    K G   ++   +SLVDMY K G V D   VF  + +++VV WN++
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           ++G+S +  + +V  LF  MQ  G  P+  T  +V++A ++ G V  G     L+VK   
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLELAEIA 427
               +   S +I +L ++G++ +A  +  NM    + S W S++A    N ++LE  E  
Sbjct: 235 ETERLVCNS-LISMLSKSGMLRDARVVFDNMENKDSVS-WNSMIAGHVINGQDLEAFETF 292

Query: 428 AK-QLFGMEPDNA 439
              QL G +P +A
Sbjct: 293 NNMQLAGAKPTHA 305


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/575 (39%), Positives = 354/575 (61%), Gaps = 8/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST+   L +    +A   GK  H   +    +N  +    L++ Y+KC  +  ARK+FD 
Sbjct: 211 STIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDV 270

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R  VSW+ +IG Y  +   +EA+ LF  M+ +     +  T+ SVL ACA   D+  
Sbjct: 271 MGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            ++LH + +K     ++ +G  LL +YAKCG+I DA R F+ M  ++ V++S++V+G VQ
Sbjct: 331 GRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQ 390

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     AL +FR  Q+ G++ +  T+  V+ AC+ LAAL  G   H  L   GF ++   
Sbjct: 391 NGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI 450

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMY+KCG +  A  VF+ ++  ++V WN MI G+  H   +E + LF  +   GL
Sbjct: 451 CNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGL 510

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T+I +LS+CSH G+V +G+ +FD M +  +++P + H  CM+DILGRAGLI EA+
Sbjct: 511 KPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAH 570

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I NMPF+    +W +LL++CR ++N+EL E  +K++  + P++ GN +LLSNIY+A  
Sbjct: 571 HFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RW++ A  R   +D  +KK    SW+EI         G ++H ++++I  KLE+L+ EMK
Sbjct: 631 RWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMK 690

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           +LGY+ E      DVE+  K+++L++HSEKLA+ FG++ L  G PI + KNLR+CGDCH+
Sbjct: 691 RLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHA 750

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF + I  RE  VRD NRFHHF NG+C+C DFW
Sbjct: 751 AIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 179/323 (55%), Gaps = 2/323 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+   A   G   H+     GL +D      L++FY+KCG++  A+++F  M
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+WN +I   +  G   +AV L + M  EG  P S  T+  VL      + +   
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS-TIVGVLPTVGEAKALGHG 229

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K LH + ++ + D  V VGT LLD+YAKC  +  A ++F+ M  RNEV+WS+M+ G+V +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289

Query: 215 ELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +  +EAL LF +  +   ++    T+ SV+ ACA L  L +G+++H  + K G   ++  
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILL 349

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYAKCG + DA   F  +  K+ V ++ ++SG  ++  +   + +F  MQ +G+
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 334 HPNEQTYISVLSACSHIGMVEKG 356
            P+  T + VL ACSH+  ++ G
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHG 432



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 207/402 (51%), Gaps = 8/402 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++C + ++    K  H   +    N D+   + L   Y  C  +  AR++FDE+P   +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           + WN II +Y  NG    A+ L+ +ML  G  P +++T   VL AC+    + +  ++H 
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRP-NKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A    ++ +VFV TAL+D YAKCG++ +A R+F SM  R+ V W++M+AG     L ++
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ L  + Q  G+  N  TI  V+       AL  GK +H    +  F + +   + L+D
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQ 338
           MYAKC C++ A  +F  +  +N V W+ MI G+       E + LF++M  +  + P   
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPV 313

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  SVL AC+ +  + +G+     ++K   VL ++   + ++ +  + G+I +A      
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGXVL-DILLGNTLLSMYAKCGVIDDAIRFFDX 372

Query: 399 M-PFDATASMWGSLLASCRNYRN--LELAEIAAKQLFGMEPD 437
           M P D+ +  + ++++ C    N  + L+     QL G++PD
Sbjct: 373 MNPKDSVS--FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 120/226 (53%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC   + + E K++H   LK   + +  V   L  +Y  C  +  A R+F+ +P  +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            + W+ ++  +  N  ++ A+ L+     LG+  N++T   V+ AC+GL A+  G ++H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
                G  S++F  ++LVD YAKCG +V+A  +FS +  ++VV WN MI+G S +    +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            + L  +MQ+ G+ PN  T + VL        +  GK+     V++
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T+   L +C+   A   G   H  +I  G   DTL  N LI+ YSKCG IS AR+VF
Sbjct: 412 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 471

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + M +  IVSWN +I  Y  +G   EA+ LF ++L  G  P  + T   +L +C+    V
Sbjct: 472 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP-DDITFICLLSSCSHSGLV 530

Query: 152 FECK-----QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E +         F++   M+  +     ++D+  + GLI +A     +MP   +V  WS
Sbjct: 531 MEGRLWFDAMSRDFSIVPRMEHCI----CMVDILGRAGLIDEAHHFIRNMPFEPDVRIWS 586

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           ++++    ++  E    + ++ Q LG E    F + S I + AG
Sbjct: 587 ALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/575 (39%), Positives = 354/575 (61%), Gaps = 8/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST+   L +    +A   GK  H   +    +N  +    L++ Y+KC  +  ARK+FD 
Sbjct: 211 STIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDV 270

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R  VSW+ +IG Y  +   +EA+ LF  M+ +     +  T+ SVL ACA   D+  
Sbjct: 271 MGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            ++LH + +K     ++ +G  LL +YAKCG+I DA R F+ M  ++ V++S++V+G VQ
Sbjct: 331 GRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQ 390

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     AL +FR  Q+ G++ +  T+  V+ AC+ LAAL  G   H  L   GF ++   
Sbjct: 391 NGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI 450

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMY+KCG +  A  VF+ ++  ++V WN MI G+  H   +E + LF  +   GL
Sbjct: 451 CNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGL 510

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T+I +LS+CSH G+V +G+ +FD M +  +++P + H  CM+DILGRAGLI EA+
Sbjct: 511 KPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAH 570

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I NMPF+    +W +LL++CR ++N+EL E  +K++  + P++ GN +LLSNIY+A  
Sbjct: 571 HFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RW++ A  R   +D  +KK    SW+EI         G ++H ++++I  KLE+L+ EMK
Sbjct: 631 RWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMK 690

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           +LGY+ E      DVE+  K+++L++HSEKLA+ FG++ L  G PI + KNLR+CGDCH+
Sbjct: 691 RLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHT 750

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF + I  RE  VRD NRFHHF NG+C+C DFW
Sbjct: 751 AIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 179/323 (55%), Gaps = 2/323 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+   A   G   H+     GL +D      L++FY+KCG++  A+++F  M
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+WN +I   +  G   +AV L + M  EG  P S  T+  VL      + +   
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS-TIVGVLPTVGEAKALGHG 229

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K LH + ++ + D  V VGT LLD+YAKC  +  A ++F+ M  RNEV+WS+M+ G+V +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289

Query: 215 ELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +  +EAL LF +  +   ++    T+ SV+ ACA L  L +G+++H  + K G   ++  
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILL 349

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYAKCG + DA   F  +  K+ V ++ ++SG  ++  +   + +F  MQ +G+
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 334 HPNEQTYISVLSACSHIGMVEKG 356
            P+  T + VL ACSH+  ++ G
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHG 432



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 208/402 (51%), Gaps = 8/402 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++C + ++    K  H   +    N D+   + L   Y  C  +  AR++FDE+P   +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           + WN II +Y  NG    A+ L+ +ML  G  P +++T   VL AC+    + +  ++H 
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRP-NKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A    ++ +VFV TAL+D YAKCG++ +A R+F SM  R+ V W++M+AG     L ++
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ L  + Q  G+  N  TI  V+       AL  GK +H    +  F + +   + L+D
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQ 338
           MYAKC C++ A  +F  +  +N V W+ MI G+       E + LF++M  +  + P   
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPV 313

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  SVL AC+ +  + +G+     ++K  +VL ++   + ++ +  + G+I +A      
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGSVL-DILLGNTLLSMYAKCGVIDDAIRFFDE 372

Query: 399 M-PFDATASMWGSLLASCRNYRN--LELAEIAAKQLFGMEPD 437
           M P D+ +  + ++++ C    N  + L+     QL G++PD
Sbjct: 373 MNPKDSVS--FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 120/226 (53%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC   + + E K++H   LK   + +  V   L  +Y  C  +  A R+F+ +P  +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            + W+ ++  +  N  ++ A+ L+     LG+  N++T   V+ AC+GL A+  G ++H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
                G  S++F  ++LVD YAKCG +V+A  +FS +  ++VV WN MI+G S +    +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            + L  +MQ+ G+ PN  T + VL        +  GK+     V++
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T+   L +C+   A   G   H  +I  G   DTL  N LI+ YSKCG IS AR+VF
Sbjct: 412 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 471

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + M +  IVSWN +I  Y  +G   EA+ LF ++L  G  P  + T   +L +C+    V
Sbjct: 472 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP-DDITFICLLSSCSHSGLV 530

Query: 152 FECK-----QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E +         F++   M+  +     ++D+  + GLI +A     +MP   +V  WS
Sbjct: 531 MEGRLWFDAMSRDFSIVPRMEHCI----CMVDILGRAGLIDEAHHFIRNMPFEPDVRIWS 586

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           ++++    ++  E    + ++ Q LG E    F + S I + AG
Sbjct: 587 ALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 357/610 (58%), Gaps = 45/610 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L SC    A  RG+  H+ I   GL  D + +N LI  Y KC  +  AR++FD M
Sbjct: 260 TFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRM 319

Query: 95  PQRCIVSWNTIIGSYTTNG-REQEAV----ALFINMLREGKTPYSEFTVSSVLCACAAKR 149
            +R ++SW+ +I  Y  +G +++E++     L   M REG  P ++ T  S+L AC A  
Sbjct: 320 SKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFP-NKVTFMSILRACTAHG 378

Query: 150 DVFECKQLHV------FALKAAM-------------------------DRNVFVGTALLD 178
            + + +Q+H       F L  ++                         ++NV   T+ L 
Sbjct: 379 ALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLS 438

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y KCG +S A +VF  MP RN V+W+ M+AG+ QN    +   L    +  G + ++ T
Sbjct: 439 MYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVT 498

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + +++ AC  LA L +GK VHA   K G  S+   A+SL+ MY+KCG V +A  VF  + 
Sbjct: 499 VITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS 558

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            ++ V WN M++G+ +H   +E + LF++M +  + PNE T  +V+SACS  G+V++G+ 
Sbjct: 559 NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGRE 618

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            F +M +   + P   HY CM+D+LGRAG + EA + I +MP +   S+W +LL +C+++
Sbjct: 619 IFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSH 678

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
            N++LAE AA  +  +EP  A  ++ LSNIYA   RW++  + R+++ D  +KK++ +S 
Sbjct: 679 NNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESS 738

Query: 479 VEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           +EI G+ +        HP I  I+++LE L +EMK+ GY P+    LHDV+D +K++ L 
Sbjct: 739 IEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALC 798

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           HHSEKLA+ +GL+    G PIRIMKNLR+CGDCH+  KF S+I  RE + RD NRFH+F 
Sbjct: 799 HHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFN 858

Query: 591 NGSCSCWDFW 600
           NG+CSC DFW
Sbjct: 859 NGTCSCGDFW 868



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 204/385 (52%), Gaps = 8/385 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    ++ CA+ R    GK+ H ++  +G+  D    N LINFYSK   ++ A +VF  
Sbjct: 57  NTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRR 116

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R +V+W+++I +Y  N    +A   F  M      P +  T  S+L AC     + +
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEP-NRITFLSILKACNNYSILEK 175

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H       M+ +V V TAL+ +Y+KCG IS A  VF  M ERN V+W++++    Q
Sbjct: 176 GRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQ 235

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    EA  L+ +    G+  N  T  S++ +C    AL +G+++H+ + + G  ++M  
Sbjct: 236 HRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIV 295

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS----RHARSV-EVMILFEKM 328
           A++L+ MY KC  V +A  +F  + +++V+ W+ MI+G++    +   S+ EV  L E+M
Sbjct: 296 ANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERM 355

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           ++ G+ PN+ T++S+L AC+  G +E+G+     + K    L      + + ++  + G 
Sbjct: 356 RREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ-TAIFNMYAKCGS 414

Query: 389 IHEAYDLILNMPFDATASMWGSLLA 413
           I+EA  +   M  +     W S L+
Sbjct: 415 IYEAEQVFSKMA-NKNVVAWTSFLS 438



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 161/301 (53%), Gaps = 3/301 (0%)

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           GR +EA+ L + ++++     +  T   V+  CA  R   + K +H    +  ++ ++++
Sbjct: 35  GRLREAIQL-LGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYL 93

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           G +L++ Y+K   ++ A +VF  M  R+ VTWSSM+A +  N    +A   F R     +
Sbjct: 94  GNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANI 153

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           E N+ T  S++ AC   + L +G+++H ++   G  +++  A++L+ MY+KCG +  A  
Sbjct: 154 EPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  + E+NVV W  +I   ++H +  E   L+E+M QAG+ PN  T++S+L++C+    
Sbjct: 214 VFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           + +G+      + +  +  ++   + +I +  +   + EA ++   M      S W +++
Sbjct: 274 LNRGRRIHS-HISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS-WSAMI 331

Query: 413 A 413
           A
Sbjct: 332 A 332



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 5/193 (2%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           ++S  A     +  T+   L++C       RGK+ HA+ + +GL +DT+ +  LI  YSK
Sbjct: 484 LSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSK 543

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG ++ AR VFD+M  R  V+WN ++  Y  +G   EAV LF  ML+E  +P +E T+++
Sbjct: 544 CGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSP-NEITLTA 602

Query: 141 VLCACAAKRDVFECKQLHVFALK--AAMDRNVFVGTALLDVYAKCGLISDASRVFESMP- 197
           V+ AC+    V E +++     +      R    G  ++D+  + G + +A    +SMP 
Sbjct: 603 VISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYG-CMVDLLGRAGRLQEAEEFIQSMPC 661

Query: 198 ERNEVTWSSMVAG 210
           E +   W +++  
Sbjct: 662 EPDISVWHALLGA 674


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/562 (39%), Positives = 356/562 (63%), Gaps = 14/562 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H   +  GL++D   +N L+N YSK G    AR+VF++M    ++SWN++I S   
Sbjct: 305 GKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQ 364

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-----DVFECKQLHVFALKAAM 166
           +  E+E+V LFI++L EG  P   FT++S+  A AAK       + + KQ+H  A+KA  
Sbjct: 365 SSLEEESVNLFIDLLHEGLKP-DHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGF 423

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           D ++ V + +LD+Y KCG + +A  VF  +   ++V W+SM++G V N   ++AL ++ R
Sbjct: 424 DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 483

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            +   +  +++T +++I A + + AL QG+Q+HA + K    S+ F  +SLVDMYAKCG 
Sbjct: 484 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 543

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + DAY +F  +  +N+ LWN M+ G ++H  + E + LF+ M+  G+ P+  ++I +LSA
Sbjct: 544 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 603

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CSH G+  +   Y   M   + + P + HYSC++D LGRAGL+ EA  +I  MPF A+AS
Sbjct: 604 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 663

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +  +LL +CR   ++E  +  A +LF +EP ++  ++LLSNIYAA  RW++V  ARK+++
Sbjct: 664 INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 723

Query: 467 DSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
              VKK+   SW+++K          R+HP+   IY K+E++++ +++ GY P+TE  L 
Sbjct: 724 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 783

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           DVED  K+  L +HSEKLA+ +GL+       IR++KNLR+CGDCH+ +K+ S++  RE 
Sbjct: 784 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 843

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           ++RD NRFHHF +G CSC D+W
Sbjct: 844 VLRDANRFHHFRDGVCSCGDYW 865



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 183/318 (57%), Gaps = 13/318 (4%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY-- 109
           GK  HA+I+  G   D   SN L+  YSKCG +S AR+VFD  P+R +V+WN I+G+Y  
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 110 ---TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
              + +G  QE + LF  +LR      +  T++ VL  C     ++  + +H +A+K  +
Sbjct: 156 SVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 214

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           + +VFV  AL+++Y+KCG + DA  +F+ M ER+ V W+ M+ G+VQ  L +EA  LF  
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 227 AQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
               GL  ++F++  ++  C  AG   L  GKQVH +  K+G  S++  A+SLV+MY+K 
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM 334

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           GC   A  VF+ ++  +++ WN+MIS  ++ +   E + LF  +   GL P+  T  S+ 
Sbjct: 335 GCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASIT 394

Query: 345 -----SACSHIGMVEKGK 357
                 AC  + ++++GK
Sbjct: 395 LATAAKACGCLVLLDQGK 412



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 145/289 (50%), Gaps = 4/289 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL    ++C       +GK  HA  I  G ++D   ++ +++ Y KCG +  A  VF+ +
Sbjct: 394 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 453

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                V+W ++I     NG E +A+ ++  M R+ +    E+T ++++ A +    + + 
Sbjct: 454 SAPDDVAWTSMISGCVDNGNEDQALRIYHRM-RQSRVMPDEYTFATLIKASSCVTALEQG 512

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH   +K     + FVGT+L+D+YAKCG I DA R+F+ M  RN   W++M+ G  Q+
Sbjct: 513 RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 572

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSNMF 272
              EEA+ LF+  +  G+E ++ +   ++ AC  AGL +    + +H++    G    + 
Sbjct: 573 GNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAY-EYLHSMPNDYGIEPEIE 631

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
             S LVD   + G V +A  V   +  K     N  + G  R    VE 
Sbjct: 632 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVET 680



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 138/270 (51%), Gaps = 11/270 (4%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           +C    +    +A D   F+   LL +Y+KCG +S A +VF++ PER+ VTW++++  + 
Sbjct: 97  KCTHARIVVSGSAGDH--FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 154

Query: 213 -----QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
                 +   +E L LFR  +       + T++ V+  C     L   + VH    K G 
Sbjct: 155 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 214

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             ++F + +LV++Y+KCG + DA  +F  + E++VVLWN M+ G+ +     E   LF +
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 328 MQQAGLHPNEQTYISVLSACSHIGM--VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             ++GL P+E +   +L+ C   G   +E GK    + VK   +  +V   + ++++  +
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKS-GLDSDVSVANSLVNMYSK 333

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASC 415
            G  + A ++  +M      S W S+++SC
Sbjct: 334 MGCAYFAREVFNDMKHLDLIS-WNSMISSC 362


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/637 (37%), Positives = 380/637 (59%), Gaps = 48/637 (7%)

Query: 11  FYYKSFSSSAIAS---ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
           F  +S  S A+AS     A+    + +   + L+SC        G+  H  I+ +G++ D
Sbjct: 80  FTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCD 139

Query: 68  TLTSNILINFYSKC-GL-----------------------------------ISGARKVF 91
             T N L+N Y+K  G+                                   I   R+VF
Sbjct: 140 LYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVF 199

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + MP++ +VS+NTII  Y  +G  ++A+ +   M      P S FT+SSVL   +   DV
Sbjct: 200 EVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDS-FTLSSVLPIFSEYVDV 258

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            + K++H + ++  +D +V++G++L+D+YAK   I D+ RVF  +  R+ ++W+S+VAG+
Sbjct: 259 IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY 318

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           VQN  Y EAL LFR+     ++      SSVI ACA LA L  GKQ+H  + + GFGSN+
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI 378

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F AS+LVDMY+KCG +  A  +F  +   + V W  +I G + H    E + LFE+M++ 
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 438

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ PN+  +++VL+ACSH+G+V++   YF+ M K + +   + HY+ + D+LGRAG + E
Sbjct: 439 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 498

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY+ I  M  + T S+W +LL+SC  ++NLELAE  A+++F ++ +N G ++L+ N+YA+
Sbjct: 499 AYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYAS 558

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
           N RW+E+A+ R  +R   ++K+ + SW+E+K        G R+HP + +I   L+ ++E+
Sbjct: 559 NGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQ 618

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M+K GY  +T   LHDV++  K+ELL  HSE+LA+ FG++   PG  IR+ KN+RIC DC
Sbjct: 619 MEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDC 678

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H  +KF S+I  RE IVRD +RFHHF  G+CSC D+W
Sbjct: 679 HVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 202/400 (50%), Gaps = 39/400 (9%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           ++  +++  R ++  + K  HA+ I     + T +++I+I+ Y+   L+  A  +F  + 
Sbjct: 8   IKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLLFKTLK 66

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              +++W ++I  +T      +A+A F+ M   G+ P       SVL +C    D+   +
Sbjct: 67  SPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCP-DHNVFPSVLKSCTMMMDLRFGE 125

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAK-CGL----------------------------- 185
            +H F ++  MD +++ G AL+++YAK  G+                             
Sbjct: 126 SVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET 185

Query: 186 ------ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
                 I    RVFE MP ++ V++++++AG+ Q+ +YE+AL + R      L+ + FT+
Sbjct: 186 CIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTL 245

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           SSV+   +    +I+GK++H  + + G  S+++  SSLVDMYAK   + D+  VFS +  
Sbjct: 246 SSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           ++ + WN++++G+ ++ R  E + LF +M  A + P    + SV+ AC+H+  +  GK  
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
              +++      N+F  S ++D+  + G I  A  +   M
Sbjct: 366 HGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRM 404


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/593 (39%), Positives = 360/593 (60%), Gaps = 30/593 (5%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L  C  +RA   G+  HA +I             LI  Y+KC  +  A  VFDEMP+R
Sbjct: 248 AILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPER 307

Query: 98  CIVSWNTIIGSYTTNGREQEAVALF-------------INMLREGK-------TPYSEFT 137
            +VSW  +I +Y+  G   +A+ LF             I+ L+          T  +EFT
Sbjct: 308 NVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFT 367

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            ++VL +C +       +Q+H   +K   + +VFVG++LLD+YAK G I +A  VFE +P
Sbjct: 368 FATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLP 427

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           ER+ V+ +++++G+ Q  L EEAL LFRR Q  G++ N  T + V+ A +GLAAL  GKQ
Sbjct: 428 ERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQ 487

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH  + ++   S +   +SL+DMY+KCG +  +  +F  + E+ V+ WN M+ G+S+H  
Sbjct: 488 VHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGE 547

Query: 318 SVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYF-DLMVKQHNVLPNVFH 375
             EV+ LF  M ++  + P+  T ++VLS CSH G+ +KG + F D+   +  V P + H
Sbjct: 548 GREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEH 607

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           Y C++D+LGR+G + EA++ I  MPF+ TA++WGSLL +CR + N+++ E A +QL  +E
Sbjct: 608 YGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIE 667

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNH 487
           P NAGN+++LSN+YA+  RWE+V+  R L+    V KE  +S +E+           R+H
Sbjct: 668 PGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSH 727

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
           PR  EI  K+++L    K++GY P+    LHDV++ +K+++L+ HSEKLAL+FGL+    
Sbjct: 728 PRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPA 787

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            VPIR++KNLRIC DCH+F K+ S++ GRE  +RD NRFH    G CSC D+W
Sbjct: 788 SVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 154/297 (51%), Gaps = 25/297 (8%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           +++L  C  KR   E +++H   +K     +VF+ T L+ +Y KC  + DA  VF+ MPE
Sbjct: 247 NAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPE 306

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL---------------------EYNQF 237
           RN V+W++M++ + Q     +AL LF     + L                     E N+F
Sbjct: 307 RNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEF 366

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T ++V+ +C      I G+Q+H+++ K  +  ++F  SSL+DMYAK G + +A  VF  +
Sbjct: 367 TFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECL 426

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            E++VV    +ISG+++     E + LF ++Q  G+  N  TY  VL+A S +  ++ GK
Sbjct: 427 PERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGK 486

Query: 358 SYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
              + +++    +P+ V   + +ID+  + G +  +  +   M ++ T   W ++L 
Sbjct: 487 QVHNHVLRSE--IPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAMLV 540



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 164/338 (48%), Gaps = 10/338 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC      + G+  H+ II +   +     + L++ Y+K G I  AR VF+ +
Sbjct: 367 TFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECL 426

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG-KTPYSEFTVSSVLCACAAKRDVFE 153
           P+R +VS   II  Y   G ++EA+ LF  +  EG K+ Y  +T   VL A +    +  
Sbjct: 427 PERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYT--GVLTALSGLAALDL 484

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   L++ +   V +  +L+D+Y+KCG ++ + R+F++M ER  ++W++M+ G+ +
Sbjct: 485 GKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSK 544

Query: 214 NELYEEALILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC--KTGFGSN 270
           +    E L LF    +   ++ +  TI +V+  C+      +G  +   +   K      
Sbjct: 545 HGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPK 604

Query: 271 MFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           M     +VD+  + G V +A+ F+     E    +W +++     H+ +V++   F   Q
Sbjct: 605 MEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHS-NVDIG-EFAGQQ 662

Query: 330 QAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
              + P N   Y+ + +  +  G  E   S  DLM+K+
Sbjct: 663 LLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKK 700


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/605 (39%), Positives = 354/605 (58%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T    L+SCA+  +   GK  HA ++ +G  +D      LIN Y++ G            
Sbjct: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190

Query: 83  ----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                     LI+G         AR++FDEMP + +VSWN +I  Y   GR +EA+ LF 
Sbjct: 191 NFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           +M R+   P +E T+ SVL ACA    +     +  +     +  N+ +  AL+D+Y+KC
Sbjct: 251 DM-RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC 309

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +F+ M ER+ ++W+ M+ G+     Y+EAL LFR     G+E  + T  S++
Sbjct: 310 GDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSIL 369

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            +CA L A+  GK +HA + K     +   ++SL+D+YAKCG +V A  VF G++ K++ 
Sbjct: 370 PSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLA 429

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN MI G + H ++ +   LF KM   G+ PNE T++ +LSAC H G+V+ G+ +F  M
Sbjct: 430 SWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSM 489

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
           V+ + + P   HY CMID+LGRAGL  EA  L+ NM      ++WGSLL +CR++  +EL
Sbjct: 490 VQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVEL 549

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK- 482
            E+ A++LF +EPDN G ++LLSNIYA   +W++VAR R  + D  +KK    + +E+  
Sbjct: 550 GELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDN 609

Query: 483 -------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                  G + HP+  +IY  LE++ E++K  G+  +T   L+D+++  K+  L HHSEK
Sbjct: 610 VVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEK 669

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   PG PIRI+KNLR+C +CHS  K  S+I  RE I RD NRFHHF +GSCS
Sbjct: 670 LAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCS 729

Query: 596 CWDFW 600
           C D+W
Sbjct: 730 CNDYW 734



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 198/393 (50%), Gaps = 36/393 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA II  GL+N     + LI F   S+ G IS A  +F+ + +  +  WN++I   +
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +     A+  F+ M+  G  P S +T   +L +CA      E KQ+H   LK     +V
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNS-YTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDV 164

Query: 171 FVGTALLDVYAKCGLISDASRVFES-------------------------------MPER 199
           F+ T+L+++YA+ G +++A  VF+                                MP +
Sbjct: 165 FIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVK 224

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V+W++M+AG+ Q    +EAL+LF   +   +  N+ TI SV+ ACA   AL  G  + 
Sbjct: 225 DVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMR 284

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           + +   G  SN+   ++L+DMY+KCG +  A  +F  + E++V+ WN MI G++      
Sbjct: 285 SWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYK 344

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LF +M  +G+ P E T++S+L +C+H+G ++ GK     + K  N + +    + +
Sbjct: 345 EALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSV-STSLSTSL 403

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           ID+  + G I  A  +   M   + AS W +++
Sbjct: 404 IDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMI 435



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 154/298 (51%), Gaps = 12/298 (4%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           AN    E ST+ + L +CA+  A   G    + I   GL ++    N LI+ YSKCG + 
Sbjct: 255 ANVPPNE-STIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQ 313

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            AR++FD+M +R ++SWN +IG YT     +EA+ALF  ML  G  P +E T  S+L +C
Sbjct: 314 TARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP-TEITFLSILPSC 372

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           A    +   K +H +  K     +  + T+L+D+YAKCG I  A +VF+ M  ++  +W+
Sbjct: 373 AHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLC 263
           +M+ G   +   ++A  LF +    G+E N+ T   ++ AC  AGL  L  G+Q  + + 
Sbjct: 433 AMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDL--GQQFFSSMV 490

Query: 264 ---KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHAR 317
              K    S  +    ++D+  + G   +A  +   +E K +  +W +++     H R
Sbjct: 491 QDYKISPKSQHYGC--MIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGR 546


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 349/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G+  H+  I  G  +D   S +LI+ YSK G +  ARK+ + +
Sbjct: 348 TYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEML 407

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW ++I  Y  +   +EA+A F  M   G  P     ++S   ACA  + + + 
Sbjct: 408 EKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP-DNIGLASAASACAGIKAMRQG 466

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H     +    ++ +   L+++YA+CG   +A  +F  +  ++E+TW+ +++GF Q+
Sbjct: 467 LQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQS 526

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            LY++AL++F +    G +YN FT  S I A A LA + QGKQVH    KTG  S    A
Sbjct: 527 RLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA 586

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y KCG + DA  +FS +  +N V WNT+I+  S+H R +E + LF++M+Q GL 
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLK 646

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VL+ACSH+G+VE+G SYF  M   + + P   HY+C++DILGRAG +  A  
Sbjct: 647 PNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARR 706

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            +  MP  A A +W +LL++C+ ++N+E+ E+AAK L  +EP ++ +++LLSN YA   +
Sbjct: 707 FVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGK 766

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W    + RK+++D  ++KE  +SW+E+K        G R HP   +IY  L +L + + K
Sbjct: 767 WANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSK 826

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GYK E  +  H+ E  +K      HSEKLA+ FGLM L P +P+R++KNLR+C DCHS+
Sbjct: 827 IGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSW 886

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MK  S +  RE ++RD+ RFHHF +GSCSC D+W
Sbjct: 887 MKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 224/407 (55%), Gaps = 7/407 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA      +GK  H+ ++  G++ D +T   L++ Y KCG I  A  +F+  
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN ++ +Y       ++  +F  M   G  P ++FT   +L  C     +   
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP-NQFTYPCILRTCTCTGQIELG 365

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  ++K   + +++V   L+D+Y+K G +  A ++ E + +R+ V+W+SM+AG+VQ+
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  EEAL  F+  Q  G+  +   ++S   ACAG+ A+ QG Q+HA +  +G+ +++   
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIW 485

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV++YA+CG   +A+ +F  IE K+ + WN +ISGF +     + +++F KM QAG  
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAK 545

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHEAY 393
            N  T+IS +SA +++  +++GK      VK  H     V   + +I + G+ G I +A 
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEV--ANALISLYGKCGSIEDAK 603

Query: 394 DLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAK-QLFGMEPDN 438
            +   M      S W +++ SC  + R LE  ++  + +  G++P++
Sbjct: 604 MIFSEMSLRNEVS-WNTIITSCSQHGRGLEALDLFDQMKQEGLKPND 649



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 218/426 (51%), Gaps = 8/426 (1%)

Query: 19  SAIASASANANATELSTLQATLQSCARE--RAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
           S +A+ +++  A   + L   LQ+C     R P+  ++ HA  +  GL  D L  N+LI+
Sbjct: 28  SLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEI-HATSVVRGLGADRLIGNLLID 86

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y+K GL+  AR+VF E+  R  VSW  ++  Y  +G  +EA  L+  M      P + +
Sbjct: 87  LYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIP-TPY 145

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            +SSVL AC   +   + + +H    K A     FVG AL+ +Y   G    A RVF  M
Sbjct: 146 VLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDM 205

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
              + VT++++++G  Q    E AL +F   Q+ GL  +  T++S++ ACA +  L +GK
Sbjct: 206 LFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           Q+H+ L K G   +     SL+D+Y KCG +  A+ +F+  +  NVVLWN M+  + + +
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              +   +F +MQ  G+HPN+ TY  +L  C+  G +E G+    L +K +    +++  
Sbjct: 326 DLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIK-NGFESDMYVS 384

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE--LAEIAAKQLFGM 434
             +ID+  + G + +A   IL M        W S++A    +   E  LA     Q  G+
Sbjct: 385 GVLIDMYSKYGCLDKARK-ILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV 443

Query: 435 EPDNAG 440
            PDN G
Sbjct: 444 WPDNIG 449


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/560 (42%), Positives = 328/560 (58%), Gaps = 10/560 (1%)

Query: 49  PVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           P  GK  HA  + +G  ND        + YSK GL   A+++FDEMP R +  WN  I +
Sbjct: 74  PFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISN 133

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
              +GR  +A+  FI   R G  P    T  + L ACA  R +   +QLH   +++  + 
Sbjct: 134 AVLDGRPGKAIDKFIEFRRVGGEP-DLITFCAFLNACADARCLDLGRQLHGLVIRSGFEG 192

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           +V V   ++DVY KC  +  A  VF  M  RN V+W +MVA   QN+  E+A ++F   +
Sbjct: 193 DVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGR 252

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G+E   + +SSVI A AG++ L  G+ VHA+  K     ++F  S+LVDMY KCG + 
Sbjct: 253 KEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           D   VF  + E+N+V WN MISG++        M LFE+MQ   +  N  T I VLSACS
Sbjct: 313 DCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSACS 371

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             G V+ G   F+ M  ++ + P   HY+C+ D+LGRAG++  AY+ +  MP   T S+W
Sbjct: 372 RGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVW 431

Query: 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
           G+LL +CR Y   EL +IAA  LF ++P ++GNH+LLSN++AA  RW+E    RK ++D 
Sbjct: 432 GALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDV 491

Query: 469 EVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            +KK    SWV  K K         +H R +EI + L KL  EM+  GY P+T + L+D+
Sbjct: 492 GIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDL 551

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           E+  K   + +HSEK+AL FGL+ L PGVPIRI KNLRICGDCHS  KF S I GRE IV
Sbjct: 552 EEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIV 611

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD NRFH F +  CSC DFW
Sbjct: 612 RDNNRFHRFRDSQCSCRDFW 631



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 216/437 (49%), Gaps = 15/437 (3%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           YSK  L + A+ +    P RC+V+W  +I     NG    A+  F  M RE   P ++FT
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKP-NDFT 60

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
                 A  A    F  KQ+H  ALK     + FVG +  D+Y+K GL  +A R+F+ MP
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
            RN   W++ ++  V +    +A+  F   + +G E +  T  + + ACA    L  G+Q
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           +H ++ ++GF  ++  A+ ++D+Y KC  V  A  VF+G+  +N V W TM++   ++  
Sbjct: 181 LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDE 240

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             +  ++F   ++ G+   +    SV+SA + I  +E G+S   L VK   V  ++F  S
Sbjct: 241 KEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKA-CVEGDIFVGS 299

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
            ++D+ G+ G I +   +   MP     S W ++++   +  ++++A    ++   M+ +
Sbjct: 300 ALVDMYGKCGSIEDCEQVFHEMPERNLVS-WNAMISGYAHQGDVDMAMTLFEE---MQSE 355

Query: 438 NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSK- 496
              N++ L  + +A  R   V    ++      +  + +  +E  G  ++  IA++  + 
Sbjct: 356 AVANYVTLICVLSACSRGGAVKLGNEIF-----ESMRDRYRIE-PGAEHYACIADMLGRA 409

Query: 497 --LEKLVEEMKKLGYKP 511
             +E+  E ++K+  +P
Sbjct: 410 GMVERAYEFVQKMPIRP 426



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 2/246 (0%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+K  L + A  + +  P R  VTW+++++G VQN  +  AL+ F + +   ++ N FT
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
                 A   L     GKQ+HA+  K G  ++ F   S  DMY+K G   +A  +F  + 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            +NV +WN  IS      R  + +  F + ++ G  P+  T+ + L+AC+    ++ G+ 
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
              L+++      +V   + +ID+ G+   + E  +++ N      +  W +++A+C   
Sbjct: 181 LHGLVIRS-GFEGDVSVANGIIDVYGKCKEV-ELAEMVFNGMGRRNSVSWCTMVAACEQN 238

Query: 419 RNLELA 424
              E A
Sbjct: 239 DEKEKA 244


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/542 (39%), Positives = 342/542 (63%), Gaps = 9/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NIL   Y K G + GARK+FDEMP+R + +WN ++   T  G ++E++  F++M 
Sbjct: 168 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 227

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG  P  EF + SV   CA  RDV   +Q+H + +++ +DR++ VG++L  +Y +CG +
Sbjct: 228 REGMHP-DEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 286

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +   V   +P  + V+ ++++AG  QN   E AL  F   + +G+  +  T  S I +C
Sbjct: 287 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 346

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + LAAL QG+Q+H  + K G    +   + LV MY++CGC+ D+  VF G    +  L +
Sbjct: 347 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 406

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MIS +  H    + + LF++M   G  P++ T++++L ACSH G+ E+G   F+LM K 
Sbjct: 407 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 466

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P+V HY+C++D+LGR+G + EA  LIL+MP      +W +LL++C+  +N ++AE 
Sbjct: 467 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 526

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
            AK++  ++P ++ +++LLSNI A +RRW +V+  RK +RD+ V+KE   SWVE+K    
Sbjct: 527 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 586

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G  +HPR  EI   LE+++ ++++ GY P+    LHD+ED  K+  L HHSEKLA+
Sbjct: 587 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 646

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            F  + L  GVPIR+MKNLR+C DCH  +K  S++ GRE +VRD++RFHHF +G CSC D
Sbjct: 647 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRD 706

Query: 599 FW 600
           +W
Sbjct: 707 YW 708



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 135/259 (52%), Gaps = 9/259 (3%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT + ++ A A   D+   ++L     +    RNV     L   Y K G +  A ++F+ 
Sbjct: 139 FTANHLMLAYADLGDLTAAREL----FERIPRRNVMSWNILFGGYIKNGDLGGARKLFDE 194

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MPERN  TW++MVAG       EE+L  F   +  G+  ++F + SV   CAGL  ++ G
Sbjct: 195 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 254

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +QVHA + ++G   +M   SSL  MY +CGC+ +   V   +   ++V  NT+I+G +++
Sbjct: 255 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 314

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNV 373
             S   +  F  M+  G+  +  T++S +S+CS +  + +G+     ++K     V+P +
Sbjct: 315 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 374

Query: 374 FHYSCMIDILGRAGLIHEA 392
              +C++ +  R G + ++
Sbjct: 375 ---TCLVHMYSRCGCLGDS 390



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA  R  V G+  HA ++  GL+ D    + L + Y +CG +     V   +P
Sbjct: 238 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 297

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS NTII   T NG  + A+  F  M+R         T  S + +C+    + + +
Sbjct: 298 SLSIVSCNTIIAGRTQNGDSEGALEYFC-MMRSVGVAADVVTFVSAISSCSDLAALAQGQ 356

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   +KA +D+ V V T L+ +Y++CG + D+ RVF      +    S+M++ +  + 
Sbjct: 357 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHG 416

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
             ++A+ LF++    G E +  T  +++ AC+      +G     ++ KT G   ++   
Sbjct: 417 HGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 476

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S     + V+W T++S
Sbjct: 477 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLS 513



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A ++ T  + + SC+   A  +G+  H +++  G++        L++ YS+CG +  + +
Sbjct: 333 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 392

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--- 146
           VF           + +I +Y  +G  Q+A+ LF  M+  G  P S+ T  ++L AC+   
Sbjct: 393 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEP-SDVTFLALLYACSHSG 451

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            K +  +C +L        M  +V   T ++D+  + G + +A  +  SMP   + V W 
Sbjct: 452 LKEEGMDCFEL--MTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWK 509

Query: 206 SMVA 209
           ++++
Sbjct: 510 TLLS 513



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           AC  L  L   +Q+HA    +G  ++ F A+ L+  YA  G +  A  +F  I  +NV+ 
Sbjct: 115 ACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 171

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN +  G+ ++        LF++M +     N  T+ ++++  +++G  E+   +F L +
Sbjct: 172 WNILFGGYIKNGDLGGARKLFDEMPER----NVATWNAMVAGLTNLGFDEESLGFF-LDM 226

Query: 365 KQHNVLPNVF 374
           ++  + P+ F
Sbjct: 227 RREGMHPDEF 236


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/609 (39%), Positives = 360/609 (59%), Gaps = 40/609 (6%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG-------- 82
           ++ S     LQSC +  +   GK  H+ II  G + D   SN L+NFYSK G        
Sbjct: 60  SDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVL 119

Query: 83  --------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119
                         LI+G         A+K+FDEM +R I +WN +I   T     ++A+
Sbjct: 120 FSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQAL 179

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           +LF  M   G  P  EFT+ SVL  CA  R +   +++H   LK   + +  VG++L  +
Sbjct: 180 SLFKEMYGLGFLP-DEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHM 238

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y K G +SD  ++ +SMP R  V W++++AG  QN   EE L  +   ++ G   ++ T 
Sbjct: 239 YIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITF 298

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            SV+ AC+ LA L QG+Q+HA + K G  S +   SSL+ MY++ GC+ D+   F   E 
Sbjct: 299 VSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDREN 358

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
            +VVLW++MI+ +  H R  E + LF +M+   +  NE T++S+L ACSH G+ EKG  Y
Sbjct: 359 FDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEY 418

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FDLMVK++ + P + HY+C++D+LGRAG + EA  +I +MP      +W +LLA+C+ ++
Sbjct: 419 FDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHK 478

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
             E+AE  ++++  ++P +A +++LLSNI+A+ R W  V++ RK +RD  V+KE   SW+
Sbjct: 479 EAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWL 538

Query: 480 EIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E+K        G ++HP+  EI   L++L+ E+K+ GY PE    LHD+++  K+  L H
Sbjct: 539 ELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAH 598

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEK A+ F LM     VPIR+MKNLR+C DCH+ +K  SRI  RE IVRD +RFHHF +
Sbjct: 599 HSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKD 658

Query: 592 GSCSCWDFW 600
           G CSC ++W
Sbjct: 659 GECSCGNYW 667


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 358/578 (61%), Gaps = 13/578 (2%)

Query: 35   TLQATLQSCARERAP---VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
            TL + L++C+          G   H   I  G+ ND+  S  LI+ YSK G +  A  + 
Sbjct: 997  TLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056

Query: 92   DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
                   + SWN I+  Y  + + ++A+  F +++ E   P  E T+++ + A     ++
Sbjct: 1057 HGKYDFDLASWNAIMFGYIKSNKSRKALEHF-SLMHEMGIPIDEITLATAIKASGCLINL 1115

Query: 152  FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             + KQ+  +A+K   + +++V + +LD+Y KCG + +A  +F  +   +EV W++M++G+
Sbjct: 1116 KQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGY 1175

Query: 212  VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            ++N   + AL ++   +V G++ +++T +++I A + L AL QGKQ+HA + K  +  + 
Sbjct: 1176 IENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDH 1235

Query: 272  FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            F  +SLVDMY KCG V DAY VF  ++ + VV WN M+ G ++H    E + LF  MQ  
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295

Query: 332  GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            G+ P++ T+I VLSACSH G+  +   YFD M K + + P + HYSC++D LGRAG I E
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQE 1355

Query: 392  AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
            A ++I +MPF A+ASM+ +LL +CR   + E A+  A +L  ++P ++  ++LLSNIYAA
Sbjct: 1356 AENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAA 1415

Query: 452  NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
            +R+W++V  AR +++   VKK+   SW+++K K        R+HP+ + IY K+E L++ 
Sbjct: 1416 SRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKR 1475

Query: 504  MKKLG-YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            +++ G Y P+T+  L DVE+  K+  L +HSEKLA+ FGL+   P   IR++KNLR+CGD
Sbjct: 1476 IREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGD 1535

Query: 563  CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            CHS +K  S++  RE ++RD NRFHHF NG+CSC D+W
Sbjct: 1536 CHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 169/367 (46%), Gaps = 39/367 (10%)

Query: 53   KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
            +  H   + +G   D   S  L+N Y K GL+  AR +FD+MP+R  V WN ++ +Y  N
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 113  GREQEAVALFINMLREGKTPYSEFTVSSVLCACAA-KRDVFECKQLHVFALKAAMDRNVF 171
              + EA+  F    R G  P      S++ C       DV   ++ H   +KA       
Sbjct: 797  SFQDEALRFFSAFHRSGFXP----DFSNLHCVIGGVNSDVSNNRKRHAEQVKAY------ 846

Query: 172  VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
                             A ++F      N   W+  +  F+       A+  F+      
Sbjct: 847  -----------------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 232  LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            + ++  T+  ++ A  G   L  G+Q+HA++ K+ F   +  ++SL++MY+K G V  A 
Sbjct: 890  IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAE 949

Query: 292  FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
              F    E +++ WNTMIS ++++   +E +  F  + + GL P++ T  SVL ACS   
Sbjct: 950  KTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS--- 1006

Query: 352  MVEKGKSYFDLMVKQH------NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
              ++G+ YF L  + H       ++ + F  + +ID+  + G + EA + +L+  +D   
Sbjct: 1007 TGDEGE-YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDL 1064

Query: 406  SMWGSLL 412
            + W +++
Sbjct: 1065 ASWNAIM 1071



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 184/395 (46%), Gaps = 39/395 (9%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA+I+  G   D   +N LI  YSKCG +  AR+VFD+   R +V+WN+I+ +Y  
Sbjct: 630 GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 112 NGREQ-----EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
                     E   LF  +LRE     +  T++ +L  C     V   + +H +A+K   
Sbjct: 690 FADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           + ++FV  AL+++Y K GL+  A  +F+ MPER+ V W+ M+  +V+N   +EAL  F  
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 227 AQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
               G   +    S++ C   G+ + +   ++ HA   K  +   MF             
Sbjct: 809 FHRSGFXPD---FSNLHCVIGGVNSDVSNNRKRHAEQVK-AYAMKMFPFD---------- 854

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
                       +  N+  WN  ++ F    + V  +  F+ + ++ +  +  T + +LS
Sbjct: 855 ------------QGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILS 902

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           A      ++ G+    L++K  +  P V   + ++++  +AG+++ A    +N P +   
Sbjct: 903 AAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDL 960

Query: 406 SMWGSLLASCRNYRNLELAEIAA-KQLF--GMEPD 437
             W ++++S     NLE+  I   + L   G++PD
Sbjct: 961 ISWNTMISSYAQ-NNLEMEAICTFRDLLRDGLKPD 994



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 9/207 (4%)

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           +A L  GK+ HA +  +G   + +  ++L+ MY+KCG +  A  VF    ++++V WN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 309 ISGFSRHARS-----VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           ++ +++ A S     +E   LF  +++ G      T   +L  C   G V+  ++     
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC--RNYRNL 421
           VK    L ++F    +++I  + GL+ +A  L   MP +  A +W  +L +    ++++ 
Sbjct: 744 VKIGFEL-DLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKAYVENSFQDE 801

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNI 448
            L   +A    G  PD +  H ++  +
Sbjct: 802 ALRFFSAFHRSGFXPDFSNLHCVIGGV 828


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/543 (42%), Positives = 335/543 (61%), Gaps = 19/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y++ G +  A+++F+E P R + +W  ++  Y  NG   EA  +F  M 
Sbjct: 234 DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP 293

Query: 127 REGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
            +    ++      V C    + R++FE          A   +NV     ++  YA+ G 
Sbjct: 294 EKNSVSWNAIIAGYVQCKRMDQARELFE----------AMPCQNVSSWNTMITGYAQNGD 343

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I+ A   F+ MP+R+ ++W++++AG+ Q+   EEAL LF   +  G   N+ T +S +  
Sbjct: 344 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 403

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA +AAL  GKQVH  + K G  S  +  ++L+ MY KCG + DAY VF GIEEK VV W
Sbjct: 404 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 463

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NTMI+G++RH    E ++LFE M++ G+ P++ T + VLSACSH G+V+KG  YF  M +
Sbjct: 464 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 523

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + +  N  HY+CMID+LGRAG + +A +L+ NMPF+  A+ WG+LL + R + N EL E
Sbjct: 524 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 583

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--- 482
            AAK +F MEPDN+G ++LLSN+YAA+ RW +V R R  +RD  VKK    SWVE++   
Sbjct: 584 KAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 643

Query: 483 -----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                G   HP    IY+ LE+L  +MKK GY   T+  LHDVE+  K  +L +HSEKLA
Sbjct: 644 HTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLA 703

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FG++ +  G PIR++KNLR+C DCH+ MK  S+I GR  I+RD +RFHHF  G CSC 
Sbjct: 704 VAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCG 763

Query: 598 DFW 600
           D+W
Sbjct: 764 DYW 766



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 167/370 (45%), Gaps = 64/370 (17%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N++I+   +   +  AR +FD+MP+R +VSWN ++  Y  NG  +EA  +F    
Sbjct: 110 DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF---- 165

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                                  D   CK             N      +L  Y + G I
Sbjct: 166 -----------------------DEMPCK-------------NSISWNGMLAAYVQNGRI 189

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            DA R+FES  +   ++W+ M+ G+V+     +A  +F R      E ++ + +++I   
Sbjct: 190 EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP----ERDEVSWNTMISGY 245

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A    L++ ++    L +     ++F  +++V  Y + G + +A  VF G+ EKN V WN
Sbjct: 246 AQNGELLEAQR----LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWN 301

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            +I+G+ +  R  +   LFE M       N  ++ ++++  +  G + + +++FD M ++
Sbjct: 302 AIIAGYVQCKRMDQARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFFDRMPQR 357

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA---TASMWGSLLASCRNYRNLEL 423
            ++      ++ +I    ++G   EA  L + M  D      S + S L++C     LEL
Sbjct: 358 DSI-----SWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALEL 412

Query: 424 AEIAAKQLFG 433
                KQ+ G
Sbjct: 413 ----GKQVHG 418



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  +TL +CA   A   GK  H +++  GL +     N L+  Y KCG I  A  VF+ 
Sbjct: 395 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 454

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +VSWNT+I  Y  +G  +EA+ LF +M + G  P  + T+  VL AC+    V +
Sbjct: 455 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILP-DDVTMVGVLSACSHTGLVDK 513

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
             +  +       +  N    T ++D+  + G + DA  + ++MP E +  TW +++ 
Sbjct: 514 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 571



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 147/347 (42%), Gaps = 55/347 (15%)

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
           A D ++      +  + + G    A R+F SMP R+ ++W++M++G + N+ +  A  LF
Sbjct: 44  ATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLF 103

Query: 225 ---------------------RRAQVLGLEYNQFTISSVICACAGLAALIQGKQV----- 258
                                R  +   L ++Q     V+   A L+   Q   V     
Sbjct: 104 EKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKE 163

Query: 259 --HAVLCKTGFGSN-MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
               + CK     N M AA      Y + G + DA  +F    +  ++ WN M+ G+ + 
Sbjct: 164 IFDEMPCKNSISWNGMLAA------YVQNGRIEDARRLFESKADWELISWNCMMGGYVKR 217

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
            R V+   +F++M +     +E ++ +++S  +  G + + +  F     + + + +VF 
Sbjct: 218 NRLVDARGIFDRMPER----DEVSWNTMISGYAQNGELLEAQRLF-----EESPVRDVFT 268

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           ++ M+    + G++ EA  +   MP   + S W +++A     + ++     A++LF   
Sbjct: 269 WTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-WNAIIAGYVQCKRMD----QARELFEAM 323

Query: 436 P-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           P  N  +   +   YA N    ++A+AR       + +  S SW  I
Sbjct: 324 PCQNVSSWNTMITGYAQN---GDIAQARNFF--DRMPQRDSISWAAI 365


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 358/578 (61%), Gaps = 13/578 (2%)

Query: 35   TLQATLQSCARERAP---VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
            TL + L++C+          G   H   I  G+ ND+  S  LI+ YSK G +  A  + 
Sbjct: 997  TLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056

Query: 92   DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
                   + SWN I+  Y  + + ++A+  F +++ E   P  E T+++ + A     ++
Sbjct: 1057 HGKYDFDLASWNAIMFGYIKSNKSRKALEHF-SLMHEMGIPIDEITLATAIKASGCLINL 1115

Query: 152  FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             + KQ+  +A+K   + +++V + +LD+Y KCG + +A  +F  +   +EV W++M++G+
Sbjct: 1116 KQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGY 1175

Query: 212  VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            ++N   + AL ++   +V G++ +++T +++I A + L AL QGKQ+HA + K  +  + 
Sbjct: 1176 IENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDH 1235

Query: 272  FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            F  +SLVDMY KCG V DAY VF  ++ + VV WN M+ G ++H    E + LF  MQ  
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295

Query: 332  GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            G+ P++ T+I VLSACSH G+  +   YFD M K + + P + HYSC++D LGRAG I E
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQE 1355

Query: 392  AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
            A ++I +MPF A+ASM+ +LL +CR   + E A+  A +L  ++P ++  ++LLSNIYAA
Sbjct: 1356 AENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAA 1415

Query: 452  NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
            +R+W++V  AR +++   VKK+   SW+++K K        R+HP+ + IY K+E L++ 
Sbjct: 1416 SRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKR 1475

Query: 504  MKKLG-YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            +++ G Y P+T+  L DVE+  K+  L +HSEKLA+ FGL+   P   IR++KNLR+CGD
Sbjct: 1476 IREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGD 1535

Query: 563  CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            CHS +K  S++  RE ++RD NRFHHF NG+CSC D+W
Sbjct: 1536 CHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 169/367 (46%), Gaps = 39/367 (10%)

Query: 53   KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
            +  H   + +G   D   S  L+N Y K GL+  AR +FD+MP+R  V WN ++ +Y  N
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 113  GREQEAVALFINMLREGKTPYSEFTVSSVLCACAA-KRDVFECKQLHVFALKAAMDRNVF 171
              + EA+  F    R G  P      S++ C       DV   ++ H   +KA       
Sbjct: 797  SFQDEALRFFSAFHRSGFFP----DFSNLHCVIGGVNSDVSNNRKRHAEQVKAY------ 846

Query: 172  VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
                             A ++F      N   W+  +  F+       A+  F+      
Sbjct: 847  -----------------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 232  LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            + ++  T+  ++ A  G   L  G+Q+HA++ K+ F   +  ++SL++MY+K G V  A 
Sbjct: 890  IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAE 949

Query: 292  FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
              F    E +++ WNTMIS ++++   +E +  F  + + GL P++ T  SVL ACS   
Sbjct: 950  KTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS--- 1006

Query: 352  MVEKGKSYFDLMVKQH------NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
              ++G+ YF L  + H       ++ + F  + +ID+  + G + EA + +L+  +D   
Sbjct: 1007 TGDEGE-YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDL 1064

Query: 406  SMWGSLL 412
            + W +++
Sbjct: 1065 ASWNAIM 1071



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 185/395 (46%), Gaps = 39/395 (9%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA+I+  G   D   +N LI  YSKCG +  AR+VFD+   R +V+WN+I+ +Y  
Sbjct: 630 GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 112 NGREQ-----EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
                     E   LF  +LRE     +  T++ +L  C     V   + +H +A+K   
Sbjct: 690 FADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           + ++FV  AL+++Y K GL+  A  +F+ MPER+ V W+ M+  +V+N   +EAL  F  
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 227 AQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
               G  +  F  S++ C   G+ + +   ++ HA   K  +   MF             
Sbjct: 809 FHRSGF-FPDF--SNLHCVIGGVNSDVSNNRKRHAEQVK-AYAMKMFPFD---------- 854

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
                       +  N+  WN  ++ F    + V  +  F+ + ++ +  +  T + +LS
Sbjct: 855 ------------QGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILS 902

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           A      ++ G+    L++K  +  P V   + ++++  +AG+++ A    +N P +   
Sbjct: 903 AAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDL 960

Query: 406 SMWGSLLASCRNYRNLELAEIAA-KQLF--GMEPD 437
             W ++++S     NLE+  I   + L   G++PD
Sbjct: 961 ISWNTMISSYAQ-NNLEMEAICTFRDLLRDGLKPD 994



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 9/207 (4%)

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           +A L  GK+ HA +  +G   + +  ++L+ MY+KCG +  A  VF    ++++V WN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 309 ISGFSRHARS-----VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           ++ +++ A S     +E   LF  +++ G      T   +L  C   G V+  ++     
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC--RNYRNL 421
           VK    L ++F    +++I  + GL+ +A  L   MP +  A +W  +L +    ++++ 
Sbjct: 744 VKIGFEL-DLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKAYVENSFQDE 801

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNI 448
            L   +A    G  PD +  H ++  +
Sbjct: 802 ALRFFSAFHRSGFFPDFSNLHCVIGGV 828


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/525 (40%), Positives = 336/525 (64%), Gaps = 9/525 (1%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +   RK+F+ MP++ +VSWNTII     NG   E + +   M      P S FT+SSVL 
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDS-FTLSSVLP 308

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
             A   D+ + K++H  +++  +D  V+V ++L+D+YAKC  + D+ RVF  + ER+ ++
Sbjct: 309 LIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS 368

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+S++AG VQN L++E L  FR+  +  ++   ++ SS++ ACA L  L  GKQ+H  + 
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 428

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           + GF  N+F ASSLVDMYAKCG +  A  +F  +  +++V W  MI G + H  +++ + 
Sbjct: 429 RNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIE 488

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LFE+M+  G+ PN   +++VL+ACSH G+V++   YF+ M     + P V HY+ + D+L
Sbjct: 489 LFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLL 548

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
           GRAG + EAYD I  MP   T S+W +LL++CR ++N+++AE  A ++  ++P N G ++
Sbjct: 549 GRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYI 608

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYS 495
           LL+NIY+A RRW+E A+ R  +R + ++K  + SW+E++        G  +HP   +I  
Sbjct: 609 LLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIRE 668

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
            +E L+E M+K GY P+T    HDVE+ +K+ L+  HSE+LA+ FG++    G  IR+ K
Sbjct: 669 AMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTK 728

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+C DCH+  KF S+I GRE +VRD +RFHHF NG+CSC D+W
Sbjct: 729 NLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 217/456 (47%), Gaps = 51/456 (11%)

Query: 2   KSLLR--YKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKI 59
           KS++R    H   +KS  S       A+    + +   + L++CA       G+  H  I
Sbjct: 77  KSVIRCYTSHGLPHKSLGS--FIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYI 134

Query: 60  IGMGLNNDTLTSNILINFYSKCGLIS-------GARKVFDEMPQRC--IVSWNTIIGSYT 110
           I +GL+ D  T N L+N YSK   +        GA +V DEM +R   + + + ++G+  
Sbjct: 135 IRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGN-- 192

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
             GR+   +  F             + VS     C ++   FE + L +     +  R +
Sbjct: 193 -QGRKVSDIEAF------------NYDVS-----CRSRE--FEAQVLEIDYKPRSEYREM 232

Query: 171 ---FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
               +G  + D+      +    ++FE MPE++ V+W++++AG  +N LY E L + R  
Sbjct: 233 EACNLGQQIKDISHSMS-VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM 291

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
               L+ + FT+SSV+   A    + +GK++H    + G  + ++ ASSL+DMYAKC  V
Sbjct: 292 GGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRV 351

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
           VD+Y VF+ + E++ + WN++I+G  ++    E +  F +M  A + P   ++ S++ AC
Sbjct: 352 VDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPAC 411

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           +H+  +  GK     + + +    N+F  S ++D+  + G I  A  +   M      S 
Sbjct: 412 AHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS- 469

Query: 408 WGSLLASCRNYRNLELAEIAAKQLF------GMEPD 437
           W +++  C     L    + A +LF      G+EP+
Sbjct: 470 WTAMIMGC----ALHGHALDAIELFEQMKTEGIEPN 501



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L   A      +GK  H   I  GL+ +   ++ LI+ Y+KC  +  + +VF  +
Sbjct: 302 TLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLL 361

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R  +SWN+II     NG   E +  F  ML     P S ++ SS++ ACA    +   
Sbjct: 362 TERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKS-YSFSSIMPACAHLTTLHLG 420

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQLH +  +   D N+F+ ++L+D+YAKCG I  A ++F+ M  R+ V+W++M+ G   +
Sbjct: 421 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALH 480

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFA 273
               +A+ LF + +  G+E N     +V+ AC+    + +  K  +++    G    +  
Sbjct: 481 GHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEH 540

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            +++ D+  + G + +AY    G+       +W T++S    H
Sbjct: 541 YAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 168/379 (44%), Gaps = 55/379 (14%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            YS   L+  + ++F+ +     ++W ++I  YT++G   +++  FI ML  G  P    
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYP-DHN 109

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD-------A 189
              SVL ACA   D+   + LH + ++  +D +++ G AL+++Y+K   +         A
Sbjct: 110 VFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGA 169

Query: 190 SRVFESMPERNE-VTWSSMVAGFVQNELYEEALILFR--------RAQVLGLEYNQFTIS 240
           S+V + M ER   V  +S++ G    ++ +     +          AQVL ++Y   +  
Sbjct: 170 SQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEY 229

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
             + AC        G+Q+  +           + S  VD   K         +F  + EK
Sbjct: 230 REMEACN------LGQQIKDI-----------SHSMSVDSVRK---------IFEMMPEK 263

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++V WNT+I+G +R+    E + +  +M  A L P+  T  SVL   +    + KGK   
Sbjct: 264 DLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIH 323

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC----- 415
              ++Q  +   V+  S +ID+  +   + ++Y  +  +  +     W S++A C     
Sbjct: 324 GCSIRQ-GLDAEVYVASSLIDMYAKCTRVVDSYR-VFTLLTERDGISWNSIIAGCVQNGL 381

Query: 416 -----RNYRNLELAEIAAK 429
                + +R + +A+I  K
Sbjct: 382 FDEGLKFFRQMLMAKIKPK 400



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 2/155 (1%)

Query: 130 KTPYS-EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           ++P S E  V+S+L    + +   + +QLH   LK        + + LL +Y+   L+ D
Sbjct: 2   RSPTSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNL-SLLLSIYSHINLLHD 60

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           + R+F ++     + W S++  +  + L  ++L  F      GL  +     SV+ ACA 
Sbjct: 61  SLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAM 120

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
           L  L  G+ +H  + + G   +++  ++L++MY+K
Sbjct: 121 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSK 155


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/584 (40%), Positives = 342/584 (58%), Gaps = 9/584 (1%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           +A+A   +  T    L+SC+R  A   G+   A  +  GL  D    + LI+ Y+ CG +
Sbjct: 112 AASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDV 171

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
           + AR VFD   +  +V WN I+ +Y  NG   E V +F  ML  G   + E T+ SV+ A
Sbjct: 172 AAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVG-VAFDEVTLVSVVTA 230

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           C    D    K +     +  + RN  + TAL+D+YAKCG I  A R+F+ M  R+ V W
Sbjct: 231 CGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAW 290

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           S+M++G+ Q +   EAL LF   Q+  +E N  T+ SV+ ACA L AL  GK VH+ + +
Sbjct: 291 SAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRR 350

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                     ++LVD YAKCGC+ DA   F  +  KN   W  +I G + + R  E + L
Sbjct: 351 KRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALEL 410

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M++AG+ P + T+I VL ACSH  +VE+G+ +FD M + + + P V HY CM+D+LG
Sbjct: 411 FSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLG 470

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAGL+ EAY  I  MP +  A +W +LL+SC  +RN+ + E A KQ+  + P ++G+++L
Sbjct: 471 RAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVL 530

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSK 496
           LSNIYA+  +W++ A  RK ++D  ++K    S +E+ G          +HP + EIY K
Sbjct: 531 LSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQK 590

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           +E+++  +K  GY P T     +VE+  K+  + HHSEKLA+ FGLM L PG  IR+ KN
Sbjct: 591 VEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKN 650

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+C DCHS  K  S++  RE +VRD N FHHF +G+CSC D+W
Sbjct: 651 LRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/542 (41%), Positives = 340/542 (62%), Gaps = 9/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NILIN + + G +  A KVFDEM +R + +WN ++         +  + LF  M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
             G  P  EFT+ SVL  CA  R  +  KQ+H + LK   + N+ VG++L  +Y K G +
Sbjct: 82  ELGFLP-DEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSL 140

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +  +V ++M  RN V W++++AG  QN  +E  L L+   ++ GL  ++ T+ SVI + 
Sbjct: 141 GEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSS 200

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A LA L QG+Q+HA   K G  S +   SSL+ MY+KCGC+ D+       E  + VLW+
Sbjct: 201 AELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWS 260

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           +MI+ +  H R  E + LFE+M+Q GL  N+ T++S+L ACSH G+ EKG  +F LMV++
Sbjct: 261 SMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEK 320

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P + HY+C++D+LGR+G + EA  +I +MP +A   +W +LL++CR +RN ++A  
Sbjct: 321 YGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATR 380

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
            A+++  + P ++  ++LLSNI+A+ +RW++V++ R  +RD  VKKE   SW+E+K    
Sbjct: 381 TAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVF 440

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G ++HP   EI   L++L+EEMK  GY P+T    HD +   K+  L++HSEKLA+
Sbjct: 441 QFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAI 500

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGLM + PG PIR+MKNLRIC DCH  +K  S I  RE IVRD +RFHHF +G CSC D
Sbjct: 501 AFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGD 560

Query: 599 FW 600
           +W
Sbjct: 561 YW 562



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 135/247 (54%), Gaps = 2/247 (0%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RN+     L++ + + G +  A +VF+ M ERN  TW++MV+G +Q E  E  L LFR  
Sbjct: 21  RNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREM 80

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
             LG   ++FT+ SV+  CAGL A   GKQVHA + K G+  N+   SSL  MY K G +
Sbjct: 81  HELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSL 140

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            +   V   +  +NVV WNT+I+G +++     V+ L+  M+ +GL P++ T +SV+S+ 
Sbjct: 141 GEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSS 200

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           + +  + +G+      +K       V   S +I +  + G + ++   +L+     +  +
Sbjct: 201 AELATLFQGQQIHAEAIKA-GANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSV-L 258

Query: 408 WGSLLAS 414
           W S++A+
Sbjct: 259 WSSMIAA 265



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 141/283 (49%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L+ CA  RA   GK  HA ++  G   + +  + L + Y K G +    KV   M
Sbjct: 91  TLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAM 150

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+WNT+I     NG  +  + L+  M   G  P  + T+ SV+ + A    +F+ 
Sbjct: 151 RIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRP-DKITLVSVISSSAELATLFQG 209

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A+KA  +  V V ++L+ +Y+KCG + D+ +        + V WSSM+A +  +
Sbjct: 210 QQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFH 269

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC-KTGFGSNMFA 273
              EEA+ LF + +  GL  N  T  S++ AC+      +G     ++  K G    +  
Sbjct: 270 GRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEH 329

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            + +VD+  + GC+ +A  +   +  E +VV+W T++S    H
Sbjct: 330 YTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIH 372


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/670 (37%), Positives = 378/670 (56%), Gaps = 74/670 (11%)

Query: 4   LLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMG 63
           ++ Y H   +KS   + +   S+  + T+  T    L SCA  +A   GK  H+ ++ +G
Sbjct: 117 IVGYNHLGLFKSAVHAFLRMVSSGISPTQF-TFTNVLASCAAAQALDVGKKVHSFVVKLG 175

Query: 64  LNNDTLTSNILINFYSKCG----------------------LISG---------ARKVFD 92
            +     +N L+N Y+KCG                      +IS          A  +FD
Sbjct: 176 QSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFD 235

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           +M    IVSWN+II  Y   G +  A+  F  ML+       +FT+ SVL ACA +  + 
Sbjct: 236 QMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLK 295

Query: 153 ECKQLHVFALKAAMD---------------------------------RNVFVGTALLDV 179
             KQ+H   ++A +D                                  NV   T+LLD 
Sbjct: 296 LGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDG 355

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y K G I  A  +F+S+  R+ V W++M+ G+ QN L  +AL+LFR     G + N +T+
Sbjct: 356 YFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTL 415

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI-E 298
           ++V+   + LA+L  GKQ+HAV  +    S++   ++L+ MY++ G + DA  +F+ I  
Sbjct: 416 AAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICS 475

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            ++ + W +MI   ++H    E + LFEKM +  L P+  TY+ VLSAC+H+G+VE+GKS
Sbjct: 476 YRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKS 535

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
           YF+LM   HN+ P   HY+CMID+LGRAGL+ EAY+ I NMP +     WGSLL+SCR +
Sbjct: 536 YFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVH 595

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
           + ++LA++AA++L  ++P+N+G +L L+N  +A  +WE+ A+ RK ++D  VKKE+  SW
Sbjct: 596 KYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSW 655

Query: 479 VEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           V+IK K +        HP+   IY  + K+ +E+KK+G+ P+T   LHD+E   K+++L 
Sbjct: 656 VQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILR 715

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           HHSEKLA+ F L+       +RIMKNLR+C DCHS +++ S +  RE IVRD  RFHHF 
Sbjct: 716 HHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFK 775

Query: 591 NGSCSCWDFW 600
           +GSCSC D+W
Sbjct: 776 DGSCSCQDYW 785



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 223/498 (44%), Gaps = 101/498 (20%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGL--------NN------------------------D 67
           LQS  + R P  G+  HA+II  GL        NN                         
Sbjct: 19  LQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKT 78

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
           T + N +++ ++K G +  AR+VFDE+PQ   VSW T+I  Y   G  + AV  F+ M+ 
Sbjct: 79  TFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVS 138

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
            G +P ++FT ++VL +CAA + +   K++H F +K      V V  +LL++YAKCG   
Sbjct: 139 SGISP-TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ----------VLG------ 231
            A  VF+ M  ++  TW++M++  +Q   ++ AL LF +            + G      
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGY 257

Query: 232 ----------------LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
                           L+ ++FT+ SV+ ACA   +L  GKQ+HA + +          +
Sbjct: 258 DIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN 317

Query: 276 SLVDMYAKCGCV-----------------------VDAYF----------VFSGIEEKNV 302
           +L+ MYAK G V                       +D YF          +F  ++ ++V
Sbjct: 318 ALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDV 377

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V W  MI G++++    + ++LF  M + G  PN  T  +VLS  S +  ++ GK    +
Sbjct: 378 VAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAV 437

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY-RNL 421
            ++   V  +V   + +I +  R+G I +A  +  ++        W S++ S   +    
Sbjct: 438 AIRLEEV-SSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGN 496

Query: 422 ELAEIAAKQL-FGMEPDN 438
           E  E+  K L   ++PD+
Sbjct: 497 EAIELFEKMLRINLKPDH 514


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 353/610 (57%), Gaps = 45/610 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L SC    A  RG+  H+ I   GL  D + +N LI  Y KC  I  AR+ FD M
Sbjct: 282 TFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRM 341

Query: 95  PQRCIVSWNTIIGSYTTNGREQ-----EAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
            +R ++SW+ +I  Y  +G +      E   L   M REG  P ++ T  S+L AC+   
Sbjct: 342 SKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFP-NKVTFMSILKACSVHG 400

Query: 150 DVFECKQLHV----------FALKAAM---------------------DRNVFVGTALLD 178
            + + +Q+H            +L+ A+                     ++NV    +LL 
Sbjct: 401 ALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLT 460

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y KCG ++ A +VF  M  RN V+W+ M+AG+ Q+    +   L    +V G + ++ T
Sbjct: 461 MYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVT 520

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           I S++ AC  L+AL +GK VHA   K G  S+   A+SL+ MY+KCG V +A  VF  I 
Sbjct: 521 IISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKIS 580

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            ++ V WN M++G+ +H    E + LF++M +  + PNE T+ +V+SAC   G+V++G+ 
Sbjct: 581 NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGRE 640

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            F +M +   + P   HY CM+D+LGRAG + EA + I  MP +   S+W +LL +C+++
Sbjct: 641 IFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSH 700

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
            N++LAE AA  +  +EP NA  ++ LSNIYA   RW++  + RK++ D  +KK++ +S 
Sbjct: 701 DNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESS 760

Query: 479 VEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           +EI G+ +        HP I  I+++LE L +EMK+ GY P+    LHDV++ +K+  L 
Sbjct: 761 IEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALC 820

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           HHSEKLA+ +GL+   PG PIRIMKNLR+CGDCH+  KF S+I  RE + RD NRFH+F 
Sbjct: 821 HHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFK 880

Query: 591 NGSCSCWDFW 600
           NG+CSC DFW
Sbjct: 881 NGTCSCGDFW 890



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 205/384 (53%), Gaps = 8/384 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    ++ CA+ R    GK+ H ++  +GL  D    N LINFYSK G ++   +VF  
Sbjct: 79  NTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRR 138

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R +V+W+++I +Y  N    +A   F  M ++     +  T  S+L AC     + +
Sbjct: 139 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM-KDANIEPNRITFLSILKACNNYSMLEK 197

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H     + M+ +V V TAL+ +Y+KCG IS A  +F+ M ERN V+W++++    Q
Sbjct: 198 AREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQ 257

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    EA  L+ +    G+  N  T  S++ +C    AL +G+++H+ + + G  +++  
Sbjct: 258 HRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVV 317

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS-----VEVMILFEKM 328
           A++L+ MY KC C+ DA   F  + +++V+ W+ MI+G+++          EV  L E+M
Sbjct: 318 ANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERM 377

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           ++ G+ PN+ T++S+L ACS  G +E+G+      + +     +    + + ++  + G 
Sbjct: 378 RREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDRSLQTAIFNMYAKCGS 436

Query: 389 IHEAYDLILNMPFDATASMWGSLL 412
           I+EA  +   M  +     W SLL
Sbjct: 437 IYEAEQVFSKME-NKNVVAWASLL 459



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 204/418 (48%), Gaps = 45/418 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C       + +  H  +   G+  D   +  LI  YSKCG IS A ++F +M
Sbjct: 181 TFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKM 240

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW  II +   + +  EA  L+  ML+ G +P +  T  S+L +C     +   
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISP-NAVTFVSLLNSCNTPEALNRG 299

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +++H    +  ++ +V V  AL+ +Y KC  I DA   F+ M +R+ ++WS+M+AG+ Q+
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS 359

Query: 215 -----ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
                E  +E   L  R +  G+  N+ T  S++ AC+   AL QG+Q+HA + K GF S
Sbjct: 360 GYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFES 419

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL------------------------- 304
           +    +++ +MYAKCG + +A  VFS +E KNVV                          
Sbjct: 420 DRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMS 479

Query: 305 ------WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
                 WN MI+G+++     +V  L   M+  G  P+  T IS+L AC  +  +E+GK 
Sbjct: 480 TRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKL 539

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA---YDLILNMPFDATASMWGSLLA 413
                VK   +  +    + +I +  + G + EA   +D I N   D  A  W ++LA
Sbjct: 540 VHAEAVKL-GLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR--DTVA--WNAMLA 592



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 140/245 (57%), Gaps = 1/245 (0%)

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           GR +EA+ L + ++++     +  T   ++  CA  R   + K +H    +  +  ++++
Sbjct: 57  GRLKEAIQL-LGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYL 115

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           G +L++ Y+K G ++   +VF  M  R+ VTWSSM+A +  N    +A   F R +   +
Sbjct: 116 GNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANI 175

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           E N+ T  S++ AC   + L + +++H V+  +G  +++  A++L+ MY+KCG +  A  
Sbjct: 176 EPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACE 235

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F  ++E+NVV W  +I   ++H +  E   L+EKM QAG+ PN  T++S+L++C+    
Sbjct: 236 IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA 295

Query: 353 VEKGK 357
           + +G+
Sbjct: 296 LNRGR 300


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/531 (41%), Positives = 336/531 (63%), Gaps = 10/531 (1%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y KCG +S AR VFD+MP R +VSW  +I  Y  N    EA+ L  +MLR    P + FT
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRP-NGFT 60

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            +S+L A  A       +Q+H  A+K   D +V+VG+ALLD+YA+C  +  A  VF+ + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
            +NEV+W++++AGF +    E  L+ F   Q  G     FT SS+  A A + AL QG+ 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VHA L K+G     F  ++++ MYAK G +VDA  VF  ++++++V WNTM++  +++  
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             E +  FE++++ G+  N+ T++SVL+ACSH G+V++GK YFD+M K +NV P + HY 
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYV 299

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
             +D+LGRAGL+ EA   +  MP + TA++WG+LL +CR ++N ++ + AA  +F ++PD
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD 359

Query: 438 NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPR 489
           + G  +LL NIYA+  +W + AR RK+++ + VKKE + SWV+I+            HP+
Sbjct: 360 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPK 419

Query: 490 IAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV 549
             +IY   E++   +KK GY P T H L  + +  ++  L +HSEK+AL F L+ +  G 
Sbjct: 420 SGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGA 479

Query: 550 PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            IRIMKN+RICGDCHS  K+ S++  RE +VRD NRFHHF+ GSCSC D+W
Sbjct: 480 SIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 2/240 (0%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y KCG +SDA  VF+ MP R+ V+W+ ++AG+ QN +  EA+ L           N FT
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
            +S++ A         G+Q+HA+  K  +  +++  S+L+DMYA+C  +  A  VF  + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            KN V WN +I+GF+R A     ++ F +MQ+ G      TY S+ SA + IG +E+G+ 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
               ++K    L   F  + M+ +  ++G + +A  +   M      + W ++L +   Y
Sbjct: 181 VHAHLIKSGQKL-TAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVT-WNTMLTALAQY 238



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 2/265 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA  +    + D    + L++ Y++C  +  A  VFD +  +  VSWN +I  +  
Sbjct: 77  GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFAR 136

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
               +  +  F  M R G    + FT SS+  A A    + + + +H   +K+      F
Sbjct: 137 KADGETTLMKFAEMQRNGFGA-THFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAF 195

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG  +L +YAK G + DA +VF+ M +R+ VTW++M+    Q  L +EA+  F   +  G
Sbjct: 196 VGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCG 255

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ NQ T  SV+ AC+    + +GK    ++        +    S VD+  + G + +A 
Sbjct: 256 IQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEAL 315

Query: 292 -FVFSGIEEKNVVLWNTMISGFSRH 315
            FVF    E    +W  ++     H
Sbjct: 316 IFVFKMPMEPTAAVWGALLGACRMH 340



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 10/180 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  +   + AR  A  +G+  HA +I  G        N ++  Y+K G +  ARKVFD M
Sbjct: 161 TYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRM 220

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +V+WNT++ +    G  +EAVA F   +R+     ++ T  SVL AC+    V E 
Sbjct: 221 DKRDLVTWNTMLTALAQYGLGKEAVAHF-EEIRKCGIQLNQITFLSVLTACSHGGLVKEG 279

Query: 155 KQ----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           K     +  + ++  +D  V    + +D+  + GL+ +A      MP E     W +++ 
Sbjct: 280 KHYFDMMKDYNVQPEIDHYV----SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG 335



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY KCG V DA  VF  +  ++VV W  +I+G++++    E + L   M +A   PN  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           + S+L A    G    G+    L VK +N   +V+  S ++D+  R     E  D+ + M
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVK-YNWDEDVYVGSALLDMYARC----EQMDMAI-M 114

Query: 400 PFDATASM----WGSLLASCRNYRNLE--LAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            FD   S     W +L+A      + E  L + A  Q  G        H   S++++A  
Sbjct: 115 VFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGF----GATHFTYSSMFSAFA 170

Query: 454 RWEEVARAR 462
           R   + + R
Sbjct: 171 RIGALEQGR 179


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/543 (41%), Positives = 349/543 (64%), Gaps = 11/543 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           L+ C R     +G++ HA ++    L+N  +  NI++N Y+KCG +  AR++FDEMP + 
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKD 153

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +V+W  +I  ++ N R ++A+ LF  MLR G  P + FT+SS+L A  ++  +    QLH
Sbjct: 154 MVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQP-NHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F LK     +V+VG+AL+D+YA+CG +  A   F+ MP ++EV+W+++++G  +    E
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGE 272

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
            AL L  + Q    +   FT SSV  ACA + AL QGK VHA + K+G     F  ++L+
Sbjct: 273 HALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLL 332

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           DMYAK G + DA  VF  + + +VV WNTM++G ++H    E +  FE+M + G+ PNE 
Sbjct: 333 DMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEI 392

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           +++ VL+ACSH G++++G  YF+LM K++ V P+V HY   +D+LGR GL+  A   I  
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP + TA++WG+LL +CR ++N+EL   AA++ F ++P ++G  +LLSNIYA+  RW +V
Sbjct: 452 MPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDV 511

Query: 459 ARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYK 510
           A+ RK++++S VKK+ + SWVEI+            HP+I EI  K E++  ++K++GY 
Sbjct: 512 AKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYV 571

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
           P+T H L  V+   ++E L +HSEKLAL F L+    G PIRI KN+R+CGDCH+ +KF 
Sbjct: 572 PDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFV 631

Query: 571 SRI 573
           S+I
Sbjct: 632 SKI 634



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 145/290 (50%), Gaps = 3/290 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++   E     G   HA  +  G  +     + L++ Y++CG +  A+  FD M
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P +  VSWN +I  +   G  + A+ L   M R+   P + FT SSV  ACA+   + + 
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQP-THFTYSSVFSACASIGALEQG 309

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +K+ +    F+G  LLD+YAK G I DA RVF+ + + + V+W++M+ G  Q+
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L +E L  F +   +G+E N+ +   V+ AC+    L +G     ++ K     ++   
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHY 429

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
            + VD+  + G +  A  F+     E    +W  ++ G  R  +++E+ +
Sbjct: 430 VTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL-GACRMHKNMELGV 478



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS-LV 278
           AL L +R  ++  +YN +  S ++  C  L  + QG+ VHA L  + F  N     + +V
Sbjct: 74  ALDLIQRGSLVP-DYNLY--SKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           +MYAKCGC+ DA  +F  +  K++V W  +I+GFS++ R  + ++LF +M + GL PN  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHF 190

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  S+L A      ++ G       +K +    +V+  S ++D+  R G +  A      
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLK-YGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-AGNHLLLSNIYAA 451
           MP  +  S W +L++   + R  E  E A   L+ M+  N    H   S++++A
Sbjct: 250 MPTKSEVS-WNALISG--HARKGE-GEHALHLLWKMQRKNFQPTHFTYSSVFSA 299


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 350/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C    A   G+  H ++I  G   +    ++LI+ Y+K G +  AR +   +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +VSW  +I  YT +    EA+ LF  M  +G         SS + ACA  + + + 
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRS-DNIGFSSAISACAGIQALNQG 535

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  +  +    ++ +G AL+ +YA+CG   DA   FE +  ++ ++W+++++GF Q+
Sbjct: 536 QQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQS 595

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEAL +F +    G+E N FT  S + A A  A + QGKQ+HA++ KTG+ S   A+
Sbjct: 596 GHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEAS 655

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+ +Y+KCG + DA   F  + EKNVV WN MI+G+S+H    E + LFE+M+Q GL 
Sbjct: 656 NVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLM 715

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T++ VLSACSH+G+V +G SYF  M K+H ++P   HY C++D+LGRA L+  A +
Sbjct: 716 PNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCARE 775

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +  A +W +LL++C  ++N+E+ E AA+ L  +EP+++  ++LLSN+YA + +
Sbjct: 776 FIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGK 835

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W+   R R++++D  VKKE  +SW+E+K        G R HP   +IY  ++ L E   +
Sbjct: 836 WDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGE 895

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY  +  + L+DVE  +K      HSEKLA+ FGL+ L   +PIR++KNLR+C DCH++
Sbjct: 896 IGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNW 955

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KF S+I+ R  +VRD  RFHHF  G CSC D+W
Sbjct: 956 IKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 221/419 (52%), Gaps = 9/419 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA   A  +GK  H+ +I MG+++D +    L++ Y KC  I  A + F   
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +V WN ++ +Y   G   E+  +F+ M  EG  P +++T  S+L  C +   +   
Sbjct: 376 ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMP-NQYTYPSILRTCTSLGALDLG 434

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K+    NV+V + L+D+YAK G +  A  + + + E + V+W++M+AG+ Q+
Sbjct: 435 EQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQH 494

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +L+ EAL LF+  +  G+  +    SS I ACAG+ AL QG+Q+HA    +G+  ++   
Sbjct: 495 DLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG 554

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV +YA+CG   DAY  F  I+ K+ + WN +ISGF++     E + +F +M QAG+ 
Sbjct: 555 NALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVE 614

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            N  T+ S +SA ++   +++GK    +M+K           + +I +  + G I +A  
Sbjct: 615 ANLFTFGSAVSATANTANIKQGKQIHAMMIKT-GYDSETEASNVLITLYSKCGSIEDAKR 673

Query: 395 LILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
               MP     S W +++   S   Y +  ++     +  G+ P    NH+    + +A
Sbjct: 674 EFFEMPEKNVVS-WNAMITGYSQHGYGSEAVSLFEEMKQLGLMP----NHVTFVGVLSA 727



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 223/413 (53%), Gaps = 12/413 (2%)

Query: 34  STLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           ST  + L++C+  +AP +  +  HAKII  G  +  L  N LI+ YSK G +  A+ VF+
Sbjct: 112 STFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFE 171

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            +  +  VSW  +I   + NGRE EA+ LF  M +    P + +  SSVL AC  K ++F
Sbjct: 172 RLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIP-TPYVFSSVLSACT-KIELF 229

Query: 153 EC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
           +  +QLH F +K  +    FV  AL+ +Y++ G +  A ++F  M  R+ ++++S+++G 
Sbjct: 230 KLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGL 289

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            Q    + AL LF + Q+  ++ +  T++S++ ACA + A  +GKQ+H+ + K G  S++
Sbjct: 290 AQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
               SL+D+Y KC  +  A+  F   E +NVVLWN M+  + +     E   +F +MQ  
Sbjct: 350 IIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE 409

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL PN+ TY S+L  C+ +G ++ G+     ++K      NV+  S +ID+  + G +  
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDT 468

Query: 392 AYDLILNMPFDATASMWGSLLASCRNY----RNLELAEIAAKQLFGMEPDNAG 440
           A  ++  +  +   S W +++A    +      L+L +    Q  G+  DN G
Sbjct: 469 ARGILQRLREEDVVS-WTAMIAGYTQHDLFAEALKLFQEMENQ--GIRSDNIG 518



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 240/510 (47%), Gaps = 48/510 (9%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            + C    + +  K  HA+I   G + + +  + LI+ Y   G +  A K+FD++P   +
Sbjct: 17  FEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNV 76

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLH 158
             WN +I          + + LF  M+ E  TP  E T +SVL AC+  +  F+  +Q+H
Sbjct: 77  SFWNKVISGLLAKKLASQVLGLFSLMITENVTP-DESTFASVLRACSGGKAPFQVTEQIH 135

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +      +  V   L+D+Y+K G +  A  VFE +  ++ V+W +M++G  QN   +
Sbjct: 136 AKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGRED 195

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA++LF +     +    +  SSV+ AC  +     G+Q+H  + K G  S  F  ++LV
Sbjct: 196 EAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALV 255

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            +Y++ G ++ A  +FS +  ++ + +N++ISG ++   S   + LFEKMQ   + P+  
Sbjct: 256 TLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCV 315

Query: 339 TYISVLSACSHIGMVEKGK-------------------SYFDLMVKQHNV---------- 369
           T  S+LSAC+ +G   KGK                   S  DL VK  ++          
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375

Query: 370 -LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA---TASMWGSLLASCRNYRNLELAE 425
              NV  ++ M+   G+ G + E+Y + L M  +        + S+L +C +   L+L E
Sbjct: 376 ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGE 435

Query: 426 IAAKQLF--GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-IK 482
               Q+   G +  N     +L ++YA +    E+  AR +++   +++E   SW   I 
Sbjct: 436 QIHTQVIKSGFQF-NVYVCSVLIDMYAKHG---ELDTARGILQ--RLREEDVVSWTAMIA 489

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
           G   H   AE      KL +EM+  G + +
Sbjct: 490 GYTQHDLFAEAL----KLFQEMENQGIRSD 515



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 4/128 (3%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           S +  A   AN   L T  + + + A      +GK  HA +I  G +++T  SN+LI  Y
Sbjct: 606 SQMNQAGVEAN---LFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLY 662

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
           SKCG I  A++ F EMP++ +VSWN +I  Y+ +G   EAV+LF  M + G  P +  T 
Sbjct: 663 SKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMP-NHVTF 721

Query: 139 SSVLCACA 146
             VL AC+
Sbjct: 722 VGVLSACS 729



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  N  T   +   C    +L+  K++HA + K+GF       S L+D+Y   G V +A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F  I   NV  WN +ISG      + +V+ LF  M    + P+E T+ SVL ACS  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACS-- 122

Query: 351 GMVEKGKSYFDLMVKQH 367
                GK+ F +  + H
Sbjct: 123 ----GGKAPFQVTEQIH 135


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/542 (39%), Positives = 342/542 (63%), Gaps = 9/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NIL   Y K G + GARK+FDEMP+R + +WN ++   T  G ++E++  F++M 
Sbjct: 106 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 165

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG  P  EF + SV   CA  RDV   +Q+H + +++ +DR++ VG++L  +Y +CG +
Sbjct: 166 REGMHP-DEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 224

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +   V   +P  + V+ ++++AG  QN   E AL  F   + +G+  +  T  S I +C
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 284

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + LAAL QG+Q+H  + K G    +   + LV MY++CGC+ D+  VF G    +  L +
Sbjct: 285 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 344

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MIS +  H    + + LF++M   G  P++ T++++L ACSH G+ E+G   F+LM K 
Sbjct: 345 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 404

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P+V HY+C++D+LGR+G + EA  LIL+MP      +W +LL++C+  +N ++AE 
Sbjct: 405 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 464

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
            AK++  ++P ++ +++LLSNI A +RRW +V+  RK +RD+ V+KE   SWVE+K    
Sbjct: 465 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 524

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G  +HPR  EI   LE+++ ++++ GY P+    LHD+ED  K+  L HHSEKLA+
Sbjct: 525 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 584

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            F  + L  GVPIR+MKNLR+C DCH  +K  S++ GRE +VRD++RFHHF +G CSC D
Sbjct: 585 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRD 644

Query: 599 FW 600
           +W
Sbjct: 645 YW 646



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 135/259 (52%), Gaps = 9/259 (3%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT + ++ A A   D+   ++L     +    RNV     L   Y K G +  A ++F+ 
Sbjct: 77  FTANHLMLAYADLGDLTAAREL----FERIPRRNVMSWNILFGGYIKNGDLGGARKLFDE 132

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MPERN  TW++MVAG       EE+L  F   +  G+  ++F + SV   CAGL  ++ G
Sbjct: 133 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 192

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +QVHA + ++G   +M   SSL  MY +CGC+ +   V   +   ++V  NT+I+G +++
Sbjct: 193 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 252

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNV 373
             S   +  F  M+  G+  +  T++S +S+CS +  + +G+     ++K     V+P +
Sbjct: 253 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 312

Query: 374 FHYSCMIDILGRAGLIHEA 392
              +C++ +  R G + ++
Sbjct: 313 ---TCLVHMYSRCGCLGDS 328



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA  R  V G+  HA ++  GL+ D    + L + Y +CG +     V   +P
Sbjct: 176 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 235

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS NTII   T NG  + A+  F  M+R         T  S + +C+    + + +
Sbjct: 236 SLSIVSCNTIIAGRTQNGDSEGALEYFC-MMRSVGVAADVVTFVSAISSCSDLAALAQGQ 294

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   +KA +D+ V V T L+ +Y++CG + D+ RVF      +    S+M++ +  + 
Sbjct: 295 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHG 354

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
             ++A+ LF++    G E +  T  +++ AC+      +G     ++ KT G   ++   
Sbjct: 355 HGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 414

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S     + V+W T++S
Sbjct: 415 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLS 451



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A ++ T  + + SC+   A  +G+  H +++  G++        L++ YS+CG +  + +
Sbjct: 271 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--- 146
           VF           + +I +Y  +G  Q+A+ LF  M+  G  P S+ T  ++L AC+   
Sbjct: 331 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEP-SDVTFLALLYACSHSG 389

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            K +  +C +L        M  +V   T ++D+  + G + +A  +  SMP   + V W 
Sbjct: 390 LKEEGMDCFEL--MTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWK 447

Query: 206 SMVA 209
           ++++
Sbjct: 448 TLLS 451



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           AC  L  L   +Q+HA    +G  ++ F A+ L+  YA  G +  A  +F  I  +NV+ 
Sbjct: 53  ACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 109

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN +  G+ ++        LF++M +     N  T+ ++++  +++G  E+   +F L +
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPER----NVATWNAMVAGLTNLGFDEESLGFF-LDM 164

Query: 365 KQHNVLPNVF 374
           ++  + P+ F
Sbjct: 165 RREGMHPDEF 174


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/641 (36%), Positives = 364/641 (56%), Gaps = 77/641 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           TL   L S A  R    GK  H+ I+ +GL  +   SN L+N Y+KCG    A+ VFD  
Sbjct: 148 TLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRM 207

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        +M +R IV+WN++I  Y   G +  A+ +F 
Sbjct: 208 VVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFS 267

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            MLR+       FT++SVL ACA    +   +Q+H   +    D +  V  AL+ +Y++C
Sbjct: 268 KMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 184 GLISDASR---------------------------------VFESMPERNEVTWSSMVAG 210
           G +  A R                                 +F+S+ +R+ V W++M+ G
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVG 387

Query: 211 FVQNELYEEALILFRRAQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           + Q+ LY EA+ LFR   ++G E   N +T+++++   + LA+L  GKQ+H    K+G  
Sbjct: 388 YEQHGLYGEAINLFR--SMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEI 445

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEK 327
            ++  +++L+ MYAK G +  A   F  I  E++ V W +MI   ++H  + E + LFE 
Sbjct: 446 YSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M   GL P+  TY+ V SAC+H G+V +G+ YFD+M     ++P + HY+CM+D+ GRAG
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAG 565

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
           L+ EA + I  MP +     WGSLL++CR Y+N++L ++AA++L  +EP+N+G +  L+N
Sbjct: 566 LLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALAN 625

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEK 499
           +Y+A  +WEE A+ RK ++D  VKKE+  SW+E+K K +        HP+  EIY  ++K
Sbjct: 626 LYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKK 685

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           + +E+KK+GY P+T   LHD+E+  K+++L HHSEKLA+ FGL+       +RIMKNLR+
Sbjct: 686 IWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRV 745

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCH+ +KF S++ GRE IVRD  RFHHF +G CSC D+W
Sbjct: 746 CNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 225/512 (43%), Gaps = 110/512 (21%)

Query: 41  QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV 100
           +S  +       ++ H ++I  GL       N L+N YSK G    ARK+FDEMP R   
Sbjct: 22  KSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81

Query: 101 SWNTIIGSYTTNG-------------------------------REQEAVALFINMLREG 129
           SWNT++ +Y   G                               +  +A+ +   M+REG
Sbjct: 82  SWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREG 141

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG----- 184
             P S+FT+++VL + AA R +   K++H F +K  +  NV V  +LL++YAKCG     
Sbjct: 142 IEP-SQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 185 -------LISDASR-------------------VFESMPERNEVTWSSMVAGFVQNELYE 218
                  ++ D S                     FE M ER+ VTW+SM++G+ Q     
Sbjct: 201 KVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDL 260

Query: 219 EALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            AL +F +  +   L  ++FT++SV+ ACA L  L  G+Q+H+ +  TGF  +    ++L
Sbjct: 261 RALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNAL 320

Query: 278 VDMYAKCGCV-----------------------VDAYF----------VFSGIEEKNVVL 304
           + MY++CG V                       +D Y           +F  +++++VV 
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVA 380

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W  MI G+ +H    E + LF  M      PN  T  ++LS  S +  +  GK      V
Sbjct: 381 WTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAV 440

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLI---HEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           K   +  +V   + +I +  +AG I     A+DLI     +     W S++ +   + + 
Sbjct: 441 KSGEIY-SVSVSNALITMYAKAGSITSASRAFDLI---RCERDTVSWTSMIIALAQHGHA 496

Query: 422 ELA-EIAAKQLF-GMEPDNAGNHLLLSNIYAA 451
           E A E+    L  G+ PD    H+    +++A
Sbjct: 497 EEALELFETMLMEGLRPD----HITYVGVFSA 524


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 349/575 (60%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA-RKVFDE 93
           TL   +++CA       G++ H     M L +D    N LI  Y KCGL+  A ++VFD 
Sbjct: 210 TLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDL 269

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + + SWN ++  Y  N   ++A+ L++ M   G  P   FT+ S+L AC+  + +  
Sbjct: 270 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDP-DWFTIGSLLLACSRMKSLHY 328

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H FAL+  +  + F+G +LL +Y  CG    A  +F+ M  R+ V+W+ M+AG+ Q
Sbjct: 329 GEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQ 388

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L +EA+ LFR+    G++  +  I  V  AC+ L+AL  GK++H    K     ++F 
Sbjct: 389 NGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFV 448

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           +SS++DMYAK GC+  +  +F  + EK+V  WN +I+G+  H R  E + LFEKM + GL
Sbjct: 449 SSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGL 508

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T+  +L ACSH G+VE G  YF+ M+  HN+ P + HY+C++D+LGRAG I +A 
Sbjct: 509 KPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDAL 568

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI  MP D  + +W SLL+SCR + NL L E  A +L  +EP+   N++L+SN++A + 
Sbjct: 569 RLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSG 628

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNH--------PRIAEIYSKLEKLVEEMK 505
           +W++V R R  ++D  ++K+   SW+E+ GK ++        P + E+     +L  ++ 
Sbjct: 629 KWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKIS 688

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY P+T   LHD+E+  K  +L  HSEKLA++FGL+    G+P+R+ KNLRICGDCH+
Sbjct: 689 SIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHN 748

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S++  R+ +VRD  RFHHF +G CSC D+W
Sbjct: 749 AAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 212/403 (52%), Gaps = 6/403 (1%)

Query: 40  LQSCARERAPVRGKVCHAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           LQ+C + +    G+  H  +       ND + +  +I  YS CG  S +R VFD++ ++ 
Sbjct: 112 LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 171

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  WN I+ +YT N   ++A+++F  ++   +     FT+  V+ ACA   D+   + +H
Sbjct: 172 LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 231

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDA-SRVFESMPERNEVTWSSMVAGFVQNELY 217
             A K  +  +VFVG AL+ +Y KCGL+ +A  RVF+ M  +   +W++++ G+ QN   
Sbjct: 232 GMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDP 291

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            +AL L+ +    GL+ + FTI S++ AC+ + +L  G+++H    + G   + F   SL
Sbjct: 292 RKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISL 351

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + +Y  CG    A  +F G+E +++V WN MI+G+S++    E + LF +M   G+ P E
Sbjct: 352 LSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 411

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
              + V  ACS +  +  GK      +K H +  ++F  S +ID+  + G I  +  +  
Sbjct: 412 IAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAKGGCIGLSQRIFD 470

Query: 398 NMPFDATASMWGSLLASCRNY-RNLELAEIAAKQL-FGMEPDN 438
            +     AS W  ++A    + R  E  E+  K L  G++PD+
Sbjct: 471 RLREKDVAS-WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 512


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/543 (42%), Positives = 335/543 (61%), Gaps = 19/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y++ G +  A+++F+E P R + +W  ++  Y  NG   EA  +F  M 
Sbjct: 153 DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP 212

Query: 127 REGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
            +    ++      V C    + R++FE          A   +NV     ++  YA+ G 
Sbjct: 213 EKNSVSWNAIIAGYVQCKRMDQARELFE----------AMPCQNVSSWNTMITGYAQNGD 262

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I+ A   F+ MP+R+ ++W++++AG+ Q+   EEAL LF   +  G   N+ T +S +  
Sbjct: 263 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 322

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA +AAL  GKQVH  + K G  S  +  ++L+ MY KCG + DAY VF GIEEK VV W
Sbjct: 323 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 382

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NTMI+G++RH    E ++LFE M++ G+ P++ T + VLSACSH G+V+KG  YF  M +
Sbjct: 383 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 442

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + +  N  HY+CMID+LGRAG + +A +L+ NMPF+  A+ WG+LL + R + N EL E
Sbjct: 443 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 502

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--- 482
            AAK +F MEPDN+G ++LLSN+YAA+ RW +V R R  +RD  VKK    SWVE++   
Sbjct: 503 KAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 562

Query: 483 -----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                G   HP    IY+ LE+L  +MKK GY   T+  LHDVE+  K  +L +HSEKLA
Sbjct: 563 HTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLA 622

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FG++ +  G PIR++KNLR+C DCH+ MK  S+I GR  I+RD +RFHHF  G CSC 
Sbjct: 623 VAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCG 682

Query: 598 DFW 600
           D+W
Sbjct: 683 DYW 685



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 155/300 (51%), Gaps = 19/300 (6%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +++ Y++ G +  A+++FDEMP +  +SWN ++ +Y  NGR ++A  LF    
Sbjct: 60  DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF---- 115

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            E K  +   + + ++     +  + + + +         +R+      ++  YA+ G +
Sbjct: 116 -ESKADWELISWNCMMGGYVKRNRLVDARGI----FDRMPERDEVSWNTMISGYAQNGEL 170

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A R+FE  P R+  TW++MV+G+VQN + +EA  +F        E N  + +++I   
Sbjct: 171 LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGY 226

Query: 247 AGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
                + Q +++  A+ C+     N+ + ++++  YA+ G +  A   F  + +++ + W
Sbjct: 227 VQCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISW 281

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             +I+G+++     E + LF +M++ G   N  T+ S LS C+ I  +E GK     +VK
Sbjct: 282 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 341



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 150/333 (45%), Gaps = 51/333 (15%)

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
           +P  +F     L  C   R++   + L         +R+V    A+L  YA+ G + +A 
Sbjct: 26  SPEFDFLERHDLRGCVRYRNLRAARLL----FDQMPERDVVSWNAMLSGYAQNGYVKEAK 81

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILF----------------------RRAQ 228
            +F+ MP +N ++W+ M+A +VQN   E+A  LF                      R   
Sbjct: 82  EIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVD 141

Query: 229 VLGL-----EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
             G+     E ++ + +++I   A    L++ ++    L +     ++F  +++V  Y +
Sbjct: 142 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR----LFEESPVRDVFTWTAMVSGYVQ 197

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
            G + +A  VF G+ EKN V WN +I+G+ +  R  +   LFE M       N  ++ ++
Sbjct: 198 NGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ----NVSSWNTM 253

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           ++  +  G + + +++FD M ++ ++      ++ +I    ++G   EA  L + M  D 
Sbjct: 254 ITGYAQNGDIAQARNFFDRMPQRDSI-----SWAAIIAGYAQSGYGEEALHLFVEMKRDG 308

Query: 404 ---TASMWGSLLASCRNYRNLELAEIAAKQLFG 433
                S + S L++C     LEL     KQ+ G
Sbjct: 309 ERLNRSTFTSTLSTCAEIAALEL----GKQVHG 337



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  +TL +CA   A   GK  H +++  GL +     N L+  Y KCG I  A  VF+ 
Sbjct: 314 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 373

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +VSWNT+I  Y  +G  +EA+ LF +M + G  P  + T+  VL AC+    V +
Sbjct: 374 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILP-DDVTMVGVLSACSHTGLVDK 432

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
             +  +       +  N    T ++D+  + G + DA  + ++MP E +  TW +++ 
Sbjct: 433 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/606 (37%), Positives = 364/606 (60%), Gaps = 10/606 (1%)

Query: 3   SLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGM 62
           +L  +   FY+   +    +  S     T      + LQSC   +A   GK  HA+   +
Sbjct: 17  NLFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHL 76

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G+  +   +  L++ Y+    +  AR +FD++P++ +  WN +I  Y  NG    A+ L+
Sbjct: 77  GIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILY 136

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             ML  G  P   FT+  VL AC+A   + E + +H + +K+  +R++FVG AL+D+YAK
Sbjct: 137 HKMLDYGLRP-DNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAK 195

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG + DA RVF+ +  R+ V W+SM+A + QN   +E++ L R     G+   + T+ +V
Sbjct: 196 CGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTV 255

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           I + A +A L  G+++H    + GF SN    ++L+DMYAKCG V  A  +F  + EK V
Sbjct: 256 ISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRV 315

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WN +I+G++ H  +V  + LF+KM++    P+  T++ VL+ACS   ++++G++ ++L
Sbjct: 316 VSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNL 374

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           MV+ + + P V HY+CMID+LG  G + EAYDLI NM     + +WG+LL SC+ + N+E
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVE 434

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           LAE+A ++L  +EPD++GN+++L+N+YA + +WE V + R+++ D  +KK  + SW+E+K
Sbjct: 435 LAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVK 494

Query: 483 --------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
                   G  +H     IY++L++L   M + GY P+T    HDVE+  K  ++  HSE
Sbjct: 495 NKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSE 554

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           +LA+ FGL+   PG  + I KNLRIC DCH  +KF S+I  RE  VRD+NR+H F +G C
Sbjct: 555 RLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMC 614

Query: 595 SCWDFW 600
           SC D W
Sbjct: 615 SCGDHW 620


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/643 (38%), Positives = 371/643 (57%), Gaps = 62/643 (9%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           S I    A    +++ ++   L +CA  +A  + K  H+  I  G   D    N LI+ Y
Sbjct: 245 SMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTY 304

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR------------------------ 114
           +KCG ++ A KVF+ M  + +VSWN ++  YT +G                         
Sbjct: 305 AKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWS 364

Query: 115 -----------EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK 163
                       QEA+  F  M+ +G  P S  T+ S+L ACA+   + +  ++H ++LK
Sbjct: 365 AVIAGYAQRGCSQEALDAFQQMILDGSEPNS-VTIISLLSACASLGALSQGMEIHAYSLK 423

Query: 164 AAM------------DRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVA 209
             +              ++ V  AL+D+Y+KC     A  +F+S+P  ERN VTW+ M+ 
Sbjct: 424 KCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIG 483

Query: 210 GFVQNELYEEALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           G+ Q     +AL +F    ++   +  N +TIS ++ ACA LAAL  GKQ+HA + +   
Sbjct: 484 GYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHE 543

Query: 268 --GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
              S  F A+ L+DMY+KCG V  A  VF  + ++N V W +M+SG+  H R  E + +F
Sbjct: 544 YEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIF 603

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           +KMQ+AG  P++ +++ +L ACSH GMV++G +YFD+M + ++V+ +  HY+C+ID+L R
Sbjct: 604 DKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLAR 663

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
            G + +A+  I  MP + +A +W +LL++CR + N+ELAE A  +L  M+ +N G++ L+
Sbjct: 664 CGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLI 723

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKL 497
           SNIYA  RRW++VAR R+L++ S +KK    SWV+ K        G R+HP   EIYS L
Sbjct: 724 SNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLL 783

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           E+L+  +K +GY PET   LHDV+D  K  LL  HSEKLAL +GL+   PG PIRI KNL
Sbjct: 784 ERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNL 843

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+CGDCHS   + S+I   E IVRD +RFHHF NGSCSC  +W
Sbjct: 844 RVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 229/473 (48%), Gaps = 63/473 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C    +   G+  H  I   G  ++    N L+  YS+CG +  A  VFDE+
Sbjct: 151 TLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEI 210

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINM---LREGKTPYSEFTVS--SVLCACA 146
            ++ I   +SWN+I+ ++      + A+ LF  M   + E  T      +S  ++L ACA
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACA 270

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + + + K++H +A++     + FV  AL+D YAKCG ++DA +VF  M  ++ V+W++
Sbjct: 271 SLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNA 330

Query: 207 MVAGFVQN-------ELYE----------------------------EALILFRRAQVLG 231
           MV G+ Q+       EL+E                            EAL  F++  + G
Sbjct: 331 MVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDG 390

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS------------NMFAASSLVD 279
            E N  TI S++ ACA L AL QG ++HA   K    S            ++   ++L+D
Sbjct: 391 SEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALID 450

Query: 280 MYAKCGCVVDAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHP 335
           MY+KC     A  +F  I   E+NVV W  MI G++++  S + + +F +M  +   + P
Sbjct: 451 MYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAP 510

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYD 394
           N  T   +L AC+H+  +  GK     + + H   P+V F  +C+ID+  + G +  A +
Sbjct: 511 NAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARN 570

Query: 395 LILNMPFDATASMWGSLLASCRNY-RNLELAEIAAK-QLFGMEPDNAGNHLLL 445
           +  +MP     S W S+++    + R  E  +I  K Q  G  PD+    +LL
Sbjct: 571 VFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 150/323 (46%), Gaps = 45/323 (13%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y  CG    A  V + +     V WN ++  +   G    A+ +   MLR G  P   FT
Sbjct: 93  YLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKP-DHFT 151

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +   L AC         + LH        + NVFV  AL+ +Y++CG + DAS VF+ + 
Sbjct: 152 LPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEIT 211

Query: 198 ER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE------YNQFTISSVICACAG 248
            +   + ++W+S+VA  V+      AL LF    ++  E       +  +I +++ ACA 
Sbjct: 212 RKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACAS 271

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L AL Q K++H+   + G  ++ F  ++L+D YAKCG + DA  VF+ +E K+VV WN M
Sbjct: 272 LKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAM 331

Query: 309 ISGFSRHAR-----------------------------------SVEVMILFEKMQQAGL 333
           ++G+++                                      S E +  F++M   G 
Sbjct: 332 VTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGS 391

Query: 334 HPNEQTYISVLSACSHIGMVEKG 356
            PN  T IS+LSAC+ +G + +G
Sbjct: 392 EPNSVTIISLLSACASLGALSQG 414



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 13/251 (5%)

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +GT ++  Y  CG   DA  V E +     V W+ +V   ++    + A+ +  R    G
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            + + FT+   + AC  L +   G+ +H ++C  GF SN+F  ++LV MY++CG + DA 
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDAS 204

Query: 292 FVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH---PNEQTYI---- 341
            VF  I  K   +V+ WN++++   + +     + LF +M    +H    NE++ I    
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMI-VHEKATNERSDIISIV 263

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++L AC+ +  + + K      ++ +    + F  + +ID   + G +++A  +   M F
Sbjct: 264 NILPACASLKALPQIKEIHSYAIR-NGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEF 322

Query: 402 DATASMWGSLL 412
               S W +++
Sbjct: 323 KDVVS-WNAMV 332


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/643 (37%), Positives = 356/643 (55%), Gaps = 79/643 (12%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + ++SCA  RA   G+  HA     G   D++ ++ L + Y KC  I  ARK+FD MP
Sbjct: 107 LPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMP 166

Query: 96  QRCIV-----------------------------------SWNTIIGSYTTNGREQEAVA 120
            R +V                                   SWN ++  +  NG   EAV 
Sbjct: 167 DRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVG 226

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           +F  ML +G  P    TVS VL A     DV    Q+H + +K  +  + FV +A+LD+Y
Sbjct: 227 MFRMMLVQGFWPDGS-TVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMY 285

Query: 181 AKCGLISDASRVFESMPER-----------------------------------NEVTWS 205
            KCG + + SRVF+ + E                                    N VTW+
Sbjct: 286 GKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWT 345

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           S++A   QN    EAL LFR  Q  G+E N  TI S+I AC  ++AL+ GK++H    + 
Sbjct: 346 SIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRR 405

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   +++  S+L+DMYAKCG +  A   F  +   N+V WN ++ G++ H ++ E M +F
Sbjct: 406 GIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMF 465

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             M Q+G  P+  T+  VLSAC+  G+ E+G   ++ M ++H + P + HY+C++ +L R
Sbjct: 466 HMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSR 525

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
            G + EAY +I  MPF+  A +WG+LL+SCR + NL L EIAA++LF +EP N GN++LL
Sbjct: 526 VGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILL 585

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKL 497
           SNIYA+   W+E  R R++++   ++K    SW+E+         G ++HP++ +I  KL
Sbjct: 586 SNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKL 645

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           +KL  +MKK GY P+T   L DVE+  K+++L  HSEKLA+  GL+   PG P++++KNL
Sbjct: 646 DKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNL 705

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RIC DCH+ +K  SR+ GRE  VRD NRFHHF +G CSC DFW
Sbjct: 706 RICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 186/415 (44%), Gaps = 75/415 (18%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR---KVFDEMPQRCIVSWNTIIG 107
           + +  HA I+ + L +DT  +  L++FY+    +S  +    +   +P   + S++++I 
Sbjct: 18  QARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIH 77

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
           ++  +      +  F ++      P   F + S + +CA+ R +   +QLH FA  +   
Sbjct: 78  AFARSHHFPHVLTTFSHLHPLRLIP-DAFLLPSAIKSCASLRALDPGQQLHAFAAASGFL 136

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV------------------- 208
            +  V ++L  +Y KC  I DA ++F+ MP+R+ V WS+M+                   
Sbjct: 137 TDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEM 196

Query: 209 ----------------AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
                           AGF  N  Y+EA+ +FR   V G   +  T+S V+ A   L  +
Sbjct: 197 RSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDV 256

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK------------ 300
           + G QVH  + K G GS+ F  S+++DMY KCGCV +   VF  +EE             
Sbjct: 257 VVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGL 316

Query: 301 -----------------------NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
                                  NVV W ++I+  S++ + +E + LF  MQ  G+ PN 
Sbjct: 317 SRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNA 376

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            T  S++ AC +I  +  GK      +++  +  +V+  S +ID+  + G I  A
Sbjct: 377 VTIPSLIPACGNISALMHGKEIHCFSLRR-GIFDDVYVGSALIDMYAKCGRIQLA 430



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 147/319 (46%), Gaps = 38/319 (11%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST+   L +       V G   H  +I  GL +D    + +++ Y KCG +    +VFDE
Sbjct: 241 STVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDE 300

Query: 94  MPQRCI-----------------------------------VSWNTIIGSYTTNGREQEA 118
           + +  I                                   V+W +II S + NG++ EA
Sbjct: 301 VEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEA 360

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           + LF +M   G  P +  T+ S++ AC     +   K++H F+L+  +  +V+VG+AL+D
Sbjct: 361 LELFRDMQAYGVEP-NAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALID 419

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +YAKCG I  A R F+ M   N V+W++++ G+  +   +E + +F      G + +  T
Sbjct: 420 MYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVT 479

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
            + V+ ACA      +G + +  + +  G    M   + LV + ++ G + +AY +   +
Sbjct: 480 FTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM 539

Query: 298 E-EKNVVLWNTMISGFSRH 315
             E +  +W  ++S    H
Sbjct: 540 PFEPDACVWGALLSSCRVH 558



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 4/245 (1%)

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS---RVFESMPER 199
           C  ++   + + +Q H   L+  +  +  + T+LL  YA    +S       +   +P  
Sbjct: 8   CLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHP 67

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
              ++SS++  F ++  +   L  F     L L  + F + S I +CA L AL  G+Q+H
Sbjct: 68  TLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLH 127

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A    +GF ++   ASSL  MY KC  ++DA  +F  + +++VV+W+ MI+G+SR     
Sbjct: 128 AFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVE 187

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E   LF +M+  G+ PN  ++  +L+   + G  ++    F +M+ Q    P+    SC+
Sbjct: 188 EAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ-GFWPDGSTVSCV 246

Query: 380 IDILG 384
           +  +G
Sbjct: 247 LPAVG 251


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/542 (39%), Positives = 342/542 (63%), Gaps = 9/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NILI  Y K G +  ARK+FDEMP R + +WN ++   T +G  +E++  F  M 
Sbjct: 107 NVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMR 166

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG  P  E+ + S+   CA  RDV   +Q+H + +++ +DR++ VG++L  +Y +CG +
Sbjct: 167 REGMQP-DEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFL 225

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            D      ++P  N V+ ++ ++G  QN   E AL  F   +  G+E N  T  S + +C
Sbjct: 226 RDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSC 285

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + LAAL QG+Q+HA+  KTG    +   +SLV MY++CGC+ D+  V       ++VL +
Sbjct: 286 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCS 345

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MIS +  H    + + LF++M  AG  PNE T++++L ACSH G+ ++G + F+LM K 
Sbjct: 346 AMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKT 405

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P+V HY+C++D+LGR+G ++EA DLIL+MP      +W +LL++C+  +  ++AE 
Sbjct: 406 YGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAER 465

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-- 484
            A+++  ++P ++ +++LLSNI A + RWE+V++ R+ +R+  V+KE   SWVE+KG+  
Sbjct: 466 IAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIH 525

Query: 485 ------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                  +H R  EI   LE+++  +++ GY P+     HD+ED  K+  L HHSEKLA+
Sbjct: 526 QFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAI 585

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            F  + L  GVPIR+MKNLR+C DCH  +K  S++ GRE +VRD++RFHHF +G CSC D
Sbjct: 586 AFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGD 645

Query: 599 FW 600
           +W
Sbjct: 646 YW 647



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 8/238 (3%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RNV     L+  Y K G +  A ++F+ MP RN  TW++MVAG   + L EE+L  F   
Sbjct: 106 RNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAM 165

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  G++ +++ + S+   CAGL  ++ G+QVHA + ++G   +M   SSL  MY +CG +
Sbjct: 166 RREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFL 225

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            D       +   N+V  NT ISG +++  +   +  F  M+ AG+  N  T++S +++C
Sbjct: 226 RDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSC 285

Query: 348 SHIGMVEKGKSYFDLMVKQH-----NVLPNVFHYSCMIDILG---RAGLIHEAYDLIL 397
           S +  + +G+    L +K        V+ ++ H       LG   R  L +   DL+L
Sbjct: 286 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 343



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 138/277 (49%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA  R  V G+  HA ++  GL+ D    + L + Y +CG +         +P
Sbjct: 177 LGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALP 236

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS NT I   T NG  + A+  F  ++R      +  T  S + +C+    + + +
Sbjct: 237 SLNIVSCNTTISGRTQNGDAEGALEFFC-LMRGAGVEANAVTFVSAVTSCSDLAALAQGQ 295

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H  A+K  +D+ V V T+L+ +Y++CG + D+ RV       + V  S+M++ +  + 
Sbjct: 296 QIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHG 355

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
             ++A+ LF++    G E N+ T  +++ AC+      +G     ++ KT G   ++   
Sbjct: 356 HGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHY 415

Query: 275 SSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S   + + V+W T++S
Sbjct: 416 TCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLS 452



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 14/193 (7%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
            A   ANA    T  + + SC+   A  +G+  HA  I  G++        L++ YS+CG
Sbjct: 268 GAGVEANAV---TFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCG 324

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            +  + +V  E     +V  + +I +Y  +G  Q+AV LF  M+  G  P +E T  ++L
Sbjct: 325 CLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEP-NEVTFLTLL 383

Query: 143 CACA---AKRDVFECKQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            AC+    K +   C +L    + L+ ++       T ++D+  + G +++A  +  SMP
Sbjct: 384 YACSHSGLKDEGMNCFELMTKTYGLQPSVKHY----TCIVDLLGRSGCLNEAEDLILSMP 439

Query: 198 -ERNEVTWSSMVA 209
            + + V W ++++
Sbjct: 440 VQPDGVIWKTLLS 452



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL       S +  AC  L  L   +Q+HA    +G  ++ F A+ L+  YA  G    A
Sbjct: 40  GLWSEPGLFSHIFRACQALPLL---RQLHAFAATSGAAADRFTANHLLLAYADLGDFPTA 96

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F  I ++NV+ WN +I G+ ++        LF++M       N  T+ ++++  ++ 
Sbjct: 97  RGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPAR----NVATWNAMVAGLTNS 152

Query: 351 GMVEKGKSYFDLMVKQ 366
           G+ E+   +F  M ++
Sbjct: 153 GLNEESLGFFFAMRRE 168


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/540 (39%), Positives = 341/540 (63%), Gaps = 9/540 (1%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           ++ NILI  Y K G +  ARK+FDEMP R + +WN ++   T +G  +E++  F  M RE
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G  P  E+ + S+   CA  RDV   +Q+H + +++ +DR++ VG++L  +Y +CG + D
Sbjct: 61  GMQP-DEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRD 119

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
                 ++P  N V+ ++ ++G  QN   E AL  F   +  G+E N  T  S + +C+ 
Sbjct: 120 GEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSD 179

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LAAL QG+Q+HA+  KTG    +   +SLV MY++CGC+ D+  V       ++VL + M
Sbjct: 180 LAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAM 239

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           IS +  H    + + LF++M  AG  PNE T++++L ACSH G+ ++G + F+LM K + 
Sbjct: 240 ISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYG 299

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           + P+V HY+C++D+LGR+G ++EA DLIL+MP      +W +LL++C+  +  ++AE  A
Sbjct: 300 LQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIA 359

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK---- 484
           +++  ++P ++ +++LLSNI A + RWE+V++ R+ +R+  V+KE   SWVE+KG+    
Sbjct: 360 ERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQF 419

Query: 485 ----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
                +H R  EI   LE+++  +++ GY P+     HD+ED  K+  L HHSEKLA+ F
Sbjct: 420 CTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAF 479

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             + L  GVPIR+MKNLR+C DCH  +K  S++ GRE +VRD++RFHHF +G CSC D+W
Sbjct: 480 AFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 138/277 (49%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA  R  V G+  HA ++  GL+ D    + L + Y +CG +         +P
Sbjct: 69  LGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALP 128

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS NT I   T NG  + A+  F  ++R      +  T  S + +C+    + + +
Sbjct: 129 SLNIVSCNTTISGRTQNGDAEGALEFFC-LMRGAGVEANAVTFVSAVTSCSDLAALAQGQ 187

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H  A+K  +D+ V V T+L+ +Y++CG + D+ RV       + V  S+M++ +  + 
Sbjct: 188 QIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHG 247

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
             ++A+ LF++    G E N+ T  +++ AC+      +G     ++ KT G   ++   
Sbjct: 248 HGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHY 307

Query: 275 SSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S   + + V+W T++S
Sbjct: 308 TCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLS 344



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 14/192 (7%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           A   ANA    T  + + SC+   A  +G+  HA  I  G++        L++ YS+CG 
Sbjct: 161 AGVEANAV---TFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGC 217

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  + +V  E     +V  + +I +Y  +G  Q+AV LF  M+  G  P +E T  ++L 
Sbjct: 218 LGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEP-NEVTFLTLLY 276

Query: 144 ACA---AKRDVFECKQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP- 197
           AC+    K +   C +L    + L+ ++       T ++D+  + G +++A  +  SMP 
Sbjct: 277 ACSHSGLKDEGMNCFELMTKTYGLQPSVKHY----TCIVDLLGRSGCLNEAEDLILSMPV 332

Query: 198 ERNEVTWSSMVA 209
           + + V W ++++
Sbjct: 333 QPDGVIWKTLLS 344


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/606 (39%), Positives = 355/606 (58%), Gaps = 41/606 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T    L+SCA+  A   GK  H  ++ +GL +D      LIN Y++ G            
Sbjct: 134 TFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKS 193

Query: 83  ----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                     LI+G         AR++F+E+P R  VSWN +I  Y  +GR +EA+A F 
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M R    P +E T+ +VL ACA    +     +  +     +  N+ +  AL+D+Y+KC
Sbjct: 254 EMKRANVAP-NESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKC 312

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +FE + E++ ++W+ M+ G+     Y+EAL LFR+ Q   +E N  T  S++
Sbjct: 313 GDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSIL 372

Query: 244 CACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
            ACA L AL  GK +HA + K   G +N    +SL+DMYAKCG +  A  VF+G++ K++
Sbjct: 373 PACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
             WN MISG + H  +   + LF +M+  G  P++ T++ VLSACSH G+VE G+  F  
Sbjct: 433 GSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSS 492

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           MV+ +++ P + HY CMID+LGRAGL  EA  L+ NM      ++WGSLL +CR + N+E
Sbjct: 493 MVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVE 552

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           L E AAK LF +EP+N G ++LLSNIYA   RW++VAR R  + D  +KK    S +E+ 
Sbjct: 553 LGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVD 612

Query: 483 --------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
                   G + H +  +IY  L+++ + ++K G+ P+T   L+D+++  K+  L HHSE
Sbjct: 613 SVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSE 672

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           KLA+ FGL+   P   IRI+KNLR+CG+CHS +K  S+I  RE I RD NRFHHF +GSC
Sbjct: 673 KLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSC 732

Query: 595 SCWDFW 600
           SC D+W
Sbjct: 733 SCMDYW 738



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 215/421 (51%), Gaps = 37/421 (8%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  H++II  GL+N     + LI F   S  G +S A  +F+ + Q     WNT+I   +
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +     A+  ++ ML  G  P S +T   +L +CA      E KQ+H   LK  ++ + 
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNS-YTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDP 167

Query: 171 FVGTALLDVYAKC-------------------------------GLISDASRVFESMPER 199
           FV T+L+++YA+                                G + DA R+FE +P R
Sbjct: 168 FVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVR 227

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V+W++M+AG+ Q+  +EEAL  F+  +   +  N+ T+ +V+ ACA   +L  G  V 
Sbjct: 228 DAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVR 287

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           + +   G GSN+   ++L+DMY+KCG +  A  +F GI EK+++ WN MI G+S      
Sbjct: 288 SWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYK 347

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LF KMQQ+ + PN+ T++S+L AC+++G ++ GK     + K+   L N   ++ +
Sbjct: 348 EALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSL 407

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPD 437
           ID+  + G I  A  +   M   +  S W ++++  +   + N+ L      +  G EPD
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHGHANMALELFRQMRDEGFEPD 466

Query: 438 N 438
           +
Sbjct: 467 D 467



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 148/296 (50%), Gaps = 9/296 (3%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           AN    E ST+   L +CA+  +   G    + I   GL ++    N LI+ YSKCG + 
Sbjct: 258 ANVAPNE-STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLD 316

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            AR +F+ + ++ I+SWN +IG Y+     +EA+ALF  M +    P ++ T  S+L AC
Sbjct: 317 KARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP-NDVTFVSILPAC 375

Query: 146 AAKRDVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           A    +   K +H +  K  +   N  + T+L+D+YAKCG I  A +VF  M  ++  +W
Sbjct: 376 AYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSW 435

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVL 262
           ++M++G   +     AL LFR+ +  G E +  T   V+ AC  AGL  L  G+Q  + +
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVEL--GRQCFSSM 493

Query: 263 CKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
            +       +     ++D+  + G   +A  +   +E K +  +W +++     H 
Sbjct: 494 VEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 146/289 (50%), Gaps = 37/289 (12%)

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDASRVFESMP 197
           ++L  C + +++   KQ+H   +K  +    F  + L++  A    G +S A  +FES+ 
Sbjct: 37  TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           + N+  W++M+ G   +     A+  + R  + G+E N +T   ++ +CA + A  +GKQ
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKC-------------------------------GC 286
           +H  + K G  S+ F  +SL++MYA+                                GC
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + DA  +F  I  ++ V WN MI+G+++  R  E +  F++M++A + PNE T ++VLSA
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           C+  G +E G ++    ++ H +  N+   + +ID+  + G + +A DL
Sbjct: 274 CAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDL 321


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 348/575 (60%), Gaps = 10/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    L +CAR      G+    +    G  +D    + L++ Y++ G +  A KVFD 
Sbjct: 109 TTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDR 168

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R  V+W+T++  + + G+  +A+ ++  M RE      E  +  V+ AC A R+V  
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-REDGVKGDEVVMIGVIQACTAARNVRM 227

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H   L+  M  +V   T+L+D+YAK GL+  A RVF  M  RN+V+WS+M++GF Q
Sbjct: 228 GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQ 287

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   +EAL LFR  Q  G++ +   + S + AC+ +  L  G+ VH  + +  F  N   
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCIL 346

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++ +DMY+KCG +  A  +F+ I +++++LWN MI+    H R  + + LF++M + G+
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+ S+LSA SH G+VE+GK +F  MV    + P   HY C++D+L R+GL+ EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           DL+ +M  + T ++W +LL+ C N + LEL E  A  +  ++PD+ G   L+SN+YAA +
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMK 505
           +W++V + RKL++DS  KK    S +EI+G R        +HP+  EI SK+ KL  EM+
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K+GY P TE   HD+E+  K++ L +HSEKLA+ FGL+   PG  + I+KNLR+CGDCH 
Sbjct: 587 KMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHD 646

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S+IA RE +VRD  RFHHF +G CSC D+W
Sbjct: 647 AIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 184/342 (53%), Gaps = 7/342 (2%)

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           ++  G    A+ +F  +    +   + FT++  L ACA   D+   + +   A  A    
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLA--LSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           +VFV ++LL +YA+ G + DA +VF+ MP R+ VTWS+MVAGFV      +A+ ++RR +
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G++ ++  +  VI AC     +  G  VH  L + G   ++  A+SLVDMYAK G + 
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  VF  +  +N V W+ MISGF+++ +S E + LF  MQ +G+ P+    +S L ACS
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           +IG ++ G+S    +V++ +   N    +  ID+  + G +  A  ++ NM  D    +W
Sbjct: 322 NIGFLKLGRSVHGFIVRRFDF--NCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILW 378

Query: 409 GSLLASCRNYRNLELAEIAAKQL--FGMEPDNAGNHLLLSNI 448
            +++A C  +   + A    +++   GM PD+A    LLS +
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/575 (40%), Positives = 360/575 (62%), Gaps = 12/575 (2%)

Query: 35  TLQATLQSCARERAPVRG-KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  A + +C   ++ +RG K     +I  GL+ D    N ++  + KCG++  AR++FDE
Sbjct: 133 TYDALVSACIGLKS-IRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDE 191

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP++ I+SWNTIIG     G   EA  LF+ M ++     S   V+ ++ A A    +F 
Sbjct: 192 MPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVT-MIRASAGLGLIFA 250

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +QLH  +LK  +  +VFV  AL+D+Y+KCG I DA  VF+ MPE+  V W+S++AG+  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   EEAL ++   +  G++ + FT S +I  CA LA+L   KQ HA L + GFG ++ A
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LVD+Y+K G + DA  VF  +  KNV+ WN +I+G+  H R VE + +FE+M   G+
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T+++VLSACS+ G+ ++G   F+ M + H + P   HY+CMI++LGR GL+ EA+
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI + PF  T +MW +LL +CR ++N EL + AA++L+GM P+   N+++L NIY  + 
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSG 550

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           R EE A   + ++   ++   + SW+EIK        G + H +  EIY KL++L+ E+ 
Sbjct: 551 RLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEIS 610

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K GY P+ +  L DV D +++ +L++HSEKLA+ FGL+      P++I+++ RICGDCHS
Sbjct: 611 KHGYVPQDKFLLPDV-DEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHS 669

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  + +  RE +VRD +RFHHF +GSCSC D+W
Sbjct: 670 AIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 182/352 (51%), Gaps = 15/352 (4%)

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
           R  EA+ LF  +   G       T  +++ AC   + +   K++  + + + +D + ++ 
Sbjct: 110 RYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
             +L ++ KCG++ DA R+F+ MPE+N ++W++++ G V    Y EA  LF        +
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSD 229

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
                  ++I A AGL  +  G+Q+H+   KTG G ++F A +L+DMY+KCG + DA  V
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCV 289

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  + EK  V WN++I+G++ H  S E + ++ +M+ +G+  +  T+  ++  C+ +  +
Sbjct: 290 FDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASL 349

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           E  K     +V+ H    ++   + ++D+  + G I +A  +   MP     S W +L+A
Sbjct: 350 EHAKQAHAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVIS-WNALIA 407

Query: 414 SCRNY-RNLELAEIAAKQLF-GMEPDNAGNHLLLSNIYAA-------NRRWE 456
              N+ R +E  E+  + L  GM P    NH+    + +A       +R WE
Sbjct: 408 GYGNHGRGVEAVEMFERMLHEGMVP----NHVTFLAVLSACSYSGLSDRGWE 455


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/571 (39%), Positives = 344/571 (60%), Gaps = 9/571 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L  C    A   GK  HA+ +  GL +D   +  LI  Y+ CG I GAR+VFD M  R
Sbjct: 264 SILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVR 323

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSW  +I  Y  NG  ++A  LF  M  EG  P    T   ++ ACA   ++   +++
Sbjct: 324 DVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQP-DRITYMHIMNACAISANLNHAREI 382

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H     A    ++ V TAL+ +YAKCG I DA +VF++MP R+ V+WS+M+  +V+N   
Sbjct: 383 HSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYG 442

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EA   F   +   +E +  T  +++ AC  L AL  G +++    K    S++   ++L
Sbjct: 443 TEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNAL 502

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + M AK G V  A ++F  +  ++V+ WN MI G+S H  + E + LF++M +    PN 
Sbjct: 503 IIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNS 562

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VLSACS  G V++G+ +F  +++   ++P V  Y CM+D+LGRAG + EA  LI 
Sbjct: 563 VTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIK 622

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +MP   T+S+W SLL +CR + NL++AE AA++   ++P +   ++ LS++YAA   WE 
Sbjct: 623 SMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWEN 682

Query: 458 VARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGY 509
           VA+ RK++    ++KE+  +W+E+ GK        R+HP + EIY++L +L+  +K+ GY
Sbjct: 683 VAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGY 742

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P T++ LHDV + +K+E + +HSEKLA+ +G++ L  G PIRI KNLR+C DCHS  KF
Sbjct: 743 IPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKF 802

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++ GRE I RD +RFHHF +G CSC D+W
Sbjct: 803 ISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 177/343 (51%), Gaps = 1/343 (0%)

Query: 6   RYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLN 65
           R++  F  +  ++  +       N  +  T     Q C   R    GK     II  G  
Sbjct: 30  RFRSTFTRRVGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQ 89

Query: 66  NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
            +    N LI  YS CG ++ AR++FD +  + +V+WN +I  Y   G  +EA ALF  M
Sbjct: 90  LNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQM 149

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           + EG  P S  T  SVL AC++   +   K++H   + A    +  +GTAL+ +Y K G 
Sbjct: 150 VDEGLEP-SIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGS 208

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + DA +VF+ +  R+  T++ MV G+ ++  +E+A  LF R Q +GL+ N+ +  S++  
Sbjct: 209 MDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDG 268

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C    AL  GK VHA     G   ++  A+SL+ MY  CG +  A  VF  ++ ++VV W
Sbjct: 269 CWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSW 328

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
             MI G++ +    +   LF  MQ+ G+ P+  TY+ +++AC+
Sbjct: 329 TVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA 371



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 180/331 (54%), Gaps = 1/331 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+       GK  HA+++  G  +D      L++ Y K G +  AR+VFD +
Sbjct: 160 TFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGL 219

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R + ++N ++G Y  +G  ++A  LF  M + G  P ++ +  S+L  C     +   
Sbjct: 220 HIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKP-NKISFLSILDGCWTPEALAWG 278

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   + A +  ++ V T+L+ +Y  CG I  A RVF++M  R+ V+W+ M+ G+ +N
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAEN 338

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+A  LF   Q  G++ ++ T   ++ ACA  A L   +++H+ +   GFG+++  +
Sbjct: 339 GNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVS 398

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV MYAKCG + DA  VF  +  ++VV W+ MI  +  +    E    F  M+++ + 
Sbjct: 399 TALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIE 458

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           P+  TYI++L+AC H+G ++ G   +   +K
Sbjct: 459 PDGVTYINLLNACGHLGALDVGMEIYTQAIK 489



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 4/317 (1%)

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           +  L EG       T   +   C   RD    KQ+    ++     N++    L+ +Y+ 
Sbjct: 45  LQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSI 104

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG +++A ++F+S+  +  VTW++++AG+ Q    +EA  LFR+    GLE +  T  SV
Sbjct: 105 CGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSV 164

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + AC+  A L  GK+VHA +   GF S+    ++LV MY K G + DA  VF G+  ++V
Sbjct: 165 LDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDV 224

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
             +N M+ G+++     +   LF +MQQ GL PN+ +++S+L  C     +  GK+    
Sbjct: 225 STFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKA-VHA 283

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
                 ++ ++   + +I +    G I  A  +  NM      S W  ++       N+E
Sbjct: 284 QCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVS-WTVMIEGYAENGNIE 342

Query: 423 --LAEIAAKQLFGMEPD 437
                 A  Q  G++PD
Sbjct: 343 DAFGLFATMQEEGIQPD 359


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/542 (41%), Positives = 342/542 (63%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I  Y++ G I  AR++FDE P   + +W  ++  Y  N   +EA  LF  M 
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP 303

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                  +E + +++L        V   K+L  F +     RNV     ++  YA+CG I
Sbjct: 304 ER-----NEVSWNAMLAGYVQGERVEMAKEL--FDVMPC--RNVSTWNTMITGYAQCGKI 354

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           S+A  +F+ MP+R+ V+W++M+AG+ Q+    EAL LF   +  G   N+ + SS +  C
Sbjct: 355 SEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTC 414

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A + AL  GKQ+H  L K G+ +  F  ++L+ MY KCG + +A  +F  +  K++V WN
Sbjct: 415 ADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWN 474

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G+SRH    E +  FE M++ GL P++ T ++VLSACSH G+V+KG+ YF  M + 
Sbjct: 475 TMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQD 534

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + V PN  HY+CM+D+LGRAGL+ EA++L+ NMPF+  A++WG+LL + R + N ELAE 
Sbjct: 535 YGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAET 594

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
           AA ++F MEP+N+G ++LLSN+YA++ RW +V + R  +RD  VKK    SW+EI+ K +
Sbjct: 595 AADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTH 654

Query: 487 --------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                   HP   EI++ LE L   MKK GY  +T   LHDVE+  K+ ++ +HSE+LA+
Sbjct: 655 TFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAV 714

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            +G+M +  G PIR++KNLR+C DCH+ +K+ +++ GR  I+RD NRFHHF +GSCSC D
Sbjct: 715 AYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGD 774

Query: 599 FW 600
           +W
Sbjct: 775 YW 776



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 187/397 (47%), Gaps = 50/397 (12%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           A++++N ++++ ST Q  +Q    +  P  G            ++D    N+ I+ Y + 
Sbjct: 26  ANSASNFHSSKSST-QTQIQKSQTKPLPKSG------------DSDIKEWNVAISSYMRT 72

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G  S A +VF  MP+   VS+N +I  Y  NG  + A  LF  M      P  +    +V
Sbjct: 73  GRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM------PERDLVSWNV 126

Query: 142 LCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +     + R++ + ++L     +   +R+V     +L  YA+ G + DA RVF+ MPE+N
Sbjct: 127 MIKGYVRNRNLGKAREL----FERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKN 182

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
           +V+W+++++ +VQN   EEA +LF   +        + + S  C   G       K+   
Sbjct: 183 DVSWNALLSAYVQNSKLEEACVLFGSRE-------NWALVSWNCLLGGFV-----KKKKI 230

Query: 261 VLCKTGFGS----NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           V  +  F S    ++ + ++++  YA+ G + +A  +F      +V  W  M+SG+ ++ 
Sbjct: 231 VEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNR 290

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              E   LF++M +     NE ++ ++L+       VE  K  FD+M  +     NV  +
Sbjct: 291 MVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMPCR-----NVSTW 341

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           + MI    + G I EA +L   MP     S W +++A
Sbjct: 342 NTMITGYAQCGKISEAKNLFDKMPKRDPVS-WAAMIA 377



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+  + L +CA   A   GK  H +++  G        N L+  Y KCG I  A  +F E
Sbjct: 405 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 464

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + IVSWNT+I  Y+ +G  +EA+  F +M REG  P  + T+ +VL AC+    V +
Sbjct: 465 MAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKP-DDATMVAVLSACSHTGLVDK 523

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            +Q  H       +  N      ++D+  + GL+ +A  + ++MP E +   W +++ 
Sbjct: 524 GRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLG 581


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/546 (40%), Positives = 340/546 (62%), Gaps = 25/546 (4%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I  Y++ G I  AR++FDE P + + +W  ++  Y  N   +EA  LF  M 
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308

Query: 127 REGKTPYSEFTVSSV----LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
              +  ++      V    +       DV  C             RNV     ++  YA+
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKELFDVMPC-------------RNVSTWNTMITGYAQ 355

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG IS+A  +F+ MP+R+ V+W++M+AG+ Q+    EAL LF + +  G   N+ + SS 
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           +  CA + AL  GKQ+H  L K G+ +  F  ++L+ MY KCG + +A  +F  +  K++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 475

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WNTMI+G+SRH      +  FE M++ GL P++ T ++VLSACSH G+V+KG+ YF  
Sbjct: 476 VSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M + + V+PN  HY+CM+D+LGRAGL+ +A++L+ NMPF+  A++WG+LL + R + N E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           LAE AA ++F MEP+N+G ++LLSN+YA++ RW +V + R  +RD  VKK    SW+EI+
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655

Query: 483 GKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
            K +        HP   EI++ LE+L   MKK GY  +T   LHDVE+  K+ ++ +HSE
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSE 715

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           +LA+ +G+M +  G PIR++KNLR+C DCH+ +K+ +RI GR  I+RD NRFHHF +GSC
Sbjct: 716 RLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSC 775

Query: 595 SCWDFW 600
           SC D+W
Sbjct: 776 SCGDYW 781



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 170/354 (48%), Gaps = 37/354 (10%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           ++D    N+ I+ Y + G  + A +VF  MP+   VS+N +I  Y  NG  + A  LF  
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 125 MLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M      P  +    +V+     + R++ + ++L     +   +R+V     +L  YA+ 
Sbjct: 121 M------PERDLVSWNVMIKGYVRNRNLGKAREL----FEIMPERDVCSWNTMLSGYAQN 170

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA  VF+ MPE+N+V+W+++++ +VQN   EEA +LF+  +        + + S  
Sbjct: 171 GCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRE-------NWALVSWN 223

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGS----NMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           C   G       K+   V  +  F S    ++ + ++++  YA+ G + +A  +F     
Sbjct: 224 CLLGGFV-----KKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPV 278

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           ++V  W  M+SG+ ++    E   LF+KM +     NE ++ ++L+       +E  K  
Sbjct: 279 QDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKEL 334

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           FD+M  +     NV  ++ MI    + G I EA +L   MP     S W +++A
Sbjct: 335 FDVMPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-WAAMIA 382



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+  + L +CA   A   GK  H +++  G        N L+  Y KCG I  A  +F E
Sbjct: 410 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 469

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + IVSWNT+I  Y+ +G  + A+  F +M REG  P  + T+ +VL AC+    V +
Sbjct: 470 MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKP-DDATMVAVLSACSHTGLVDK 528

Query: 154 CKQLHVFALKAAMDRNVFVGTA----LLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
            +Q   +      D  V   +     ++D+  + GL+ DA  + ++MP E +   W +++
Sbjct: 529 GRQ---YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585

Query: 209 A 209
            
Sbjct: 586 G 586


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/620 (37%), Positives = 365/620 (58%), Gaps = 54/620 (8%)

Query: 35   TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            TL   L+SC+      R GK  H  I+  GL+ D + +N ++++Y KC     A K+F  
Sbjct: 389  TLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGL 448

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALF---------------INMLREG--------- 129
            M ++  VSWN ++ SY   G  Q++V LF                 ++R G         
Sbjct: 449  MAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELL 508

Query: 130  ------KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
                     +++ T S  L   ++   +   KQ+H   LK  +  + FV  +L+D+Y KC
Sbjct: 509  YKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKC 568

Query: 184  GLISDASRVFESMPERNE---------------VTWSSMVAGFVQNELYEEALILFRRAQ 228
            G +  AS +F+ +P+ +                V+WSSMV+G+VQN  +E+AL  F    
Sbjct: 569  GEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMI 628

Query: 229  VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
               +E ++FT++SV+ ACA    L  G+QVH  + K G G ++F  SS++DMY KCG + 
Sbjct: 629  CSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLN 688

Query: 289  DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            DA+ +F+  +++NVVLW +MISG + H +  E + LFE M   G+ PNE +++ VL+ACS
Sbjct: 689  DAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACS 748

Query: 349  HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
            H G++E+G  YF LM + + + P   H++CM+D+ GRAG ++E  + I N      +S+W
Sbjct: 749  HAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVW 808

Query: 409  GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
             S L+SCR ++N+E+     K+L  +EP +AG ++L S+I A   RWEE A+ R L++  
Sbjct: 809  RSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQR 868

Query: 469  EVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
             VKK  S+SW+++K        G R+HP+  +IYS L++L+  +K++GY  +    + DV
Sbjct: 869  GVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDV 928

Query: 521  EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
            E  ++Q LL +HSEKLA+ +G++   PG PIR+MKNLR+C DCH+F+K+AS + GRE I+
Sbjct: 929  EQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIII 988

Query: 581  RDLNRFHHFTNGSCSCWDFW 600
            RD++RFHHF +G CSC D+W
Sbjct: 989  RDIHRFHHFKHGHCSCADYW 1008



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 200/410 (48%), Gaps = 52/410 (12%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           +V HAK+I  G     +  N L+N Y+K   +  A K+F+E+PQ  + SW  +I  +   
Sbjct: 308 EVLHAKLIKNGCVG--IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARI 365

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVF 171
           G   + + LF  M  +G  P ++FT+S VL +C++   D    K +H + L+  +D +  
Sbjct: 366 GLSADVLGLFTKMQDQGVCP-NQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAV 424

Query: 172 VGTALLDVYAKC----------GLISDASRV---------------------FESMPERN 200
           +  ++LD Y KC          GL+++   V                     F  +P ++
Sbjct: 425 LNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKD 484

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
             +W++M+ G ++N     AL L  +    G  +N+ T S  +   + L+ L  GKQ+H 
Sbjct: 485 AASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHT 544

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL---------------W 305
            + K G   + F  +SL+DMY KCG +  A  +F  + +++ ++               W
Sbjct: 545 QVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSW 604

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           ++M+SG+ ++ R  + +  F  M  + +  ++ T  SV+SAC+  G++E G+     + K
Sbjct: 605 SSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQK 664

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
             + L +VF  S +ID+  + G +++A+ LI N   D    +W S+++ C
Sbjct: 665 IGHGL-DVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGC 712


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/542 (41%), Positives = 343/542 (63%), Gaps = 18/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ NI+I  Y++ GL+S AR++F+E+P R + +W  ++  +  NG   EA  +F  M 
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +     +E + ++++      + + + ++L          RN      ++  YA+CG I
Sbjct: 305 EK-----NEVSWNAMIAGYVQSQQIEKAREL----FDQMPSRNTSSWNTMVTGYAQCGNI 355

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  +F+ MP+R+ ++W++M++G+ Q+   EEAL LF + +  G   N+  ++  + +C
Sbjct: 356 DQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSC 415

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  GKQ+H  L K GF +   A ++L+ MY KCG + +A+ VF  I EK++V WN
Sbjct: 416 AEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWN 475

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    E + LFE M+   + P++ T + VLSACSH G+V+KG  YF+ M + 
Sbjct: 476 TMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQN 534

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + +  N  HY+CMID+LGRAG + EA +L+ +MPF   A+ WG+LL + R + + EL E 
Sbjct: 535 YGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEK 594

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR- 485
           AA+++F MEPDN+G ++LLSN+YAA+ RW EV   R  +RD  VKK    SWVEI+ K  
Sbjct: 595 AAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTH 654

Query: 486 -------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                  +HP    IY+ LE+L  E+KK G+   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 655 IFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAV 714

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FG++ + PG PIR++KNLR+C DCH+ +K  S+I  R+ IVRD NRFHHF+ GSCSC D
Sbjct: 715 AFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGD 774

Query: 599 FW 600
           +W
Sbjct: 775 YW 776



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 187/383 (48%), Gaps = 36/383 (9%)

Query: 55  CHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR 114
           C  K+     + D ++ N++++ Y K G +S AR +F++MP++ +VSWN ++  +  NG 
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCA-CAAKRDVFECKQ----------LHVFALK 163
            +EA  +F  ML + +  ++    + V        R +F+ K           +  +  K
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 164 AAMD-----------RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +D           R+      ++  YA+ GL+S+A R+FE +P R+   W++MV+GFV
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFV 288

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSN 270
           QN + +EA  +F        E N+ + +++I      A  +Q +Q+     L       N
Sbjct: 289 QNGMLDEATRIFEEMP----EKNEVSWNAMI------AGYVQSQQIEKARELFDQMPSRN 338

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
             + +++V  YA+CG +  A  +F  + +++ + W  MISG+++  +S E + LF KM++
Sbjct: 339 TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G   N       LS+C+ I  +E GK     +VK           + ++ + G+ G I 
Sbjct: 399 DGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIE 457

Query: 391 EAYDLILNMPFDATASMWGSLLA 413
           EA+D+  ++      S W +++A
Sbjct: 458 EAFDVFEDITEKDIVS-WNTMIA 479



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 4/178 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S L   L SCA   A   GK  H +++  G     +  N L+  Y KCG I  A  VF++
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED 465

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ IVSWNT+I  Y  +G  +EA+ALF +M    K    + T+  VL AC+    V +
Sbjct: 466 ITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKP--DDVTLVGVLSACSHTGLVDK 523

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
             +  +       +  N    T ++D+  + G + +A  + +SMP   +  TW +++ 
Sbjct: 524 GMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLG 581



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 139/340 (40%), Gaps = 66/340 (19%)

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           IV WN  I +Y   G+ + A+++F  M R     Y+   +S  L       + F+C    
Sbjct: 60  IVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAM-ISGYLS-----NNKFDC---- 109

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                                         A +VFE MP+R+ ++W+ M++G+V+N    
Sbjct: 110 ------------------------------ARKVFEKMPDRDLISWNVMLSGYVKNGNLS 139

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASS 276
            A  LF          NQ     V+   A L+   Q   V     +       N  + + 
Sbjct: 140 AARALF----------NQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG 189

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+  Y + G + DA  +F    +  +V WN ++ G+ R  R  +   LF++M       +
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----D 245

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + ++  +++  +  G++ + +  F+ +      + +VF ++ M+    + G++ EA  + 
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTAMVSGFVQNGMLDEATRIF 300

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
             MP     S W +++A     + +E     A++LF   P
Sbjct: 301 EEMPEKNEVS-WNAMIAGYVQSQQIE----KARELFDQMP 335


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 346/575 (60%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+   L+S +R   P+R G+  HA+ + +  + +      L++ Y+KCGL+  A++VFDE
Sbjct: 72  TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 131

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP    V W  +I +Y   G  +EAV +  N    G  P S FT   VL ACA   D+  
Sbjct: 132 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDS-FTAVRVLTACARIADLAT 190

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +   A +  + ++VFV TA +D+Y KCG ++ A  VF+ M  ++ V W +MV G+  
Sbjct: 191 GETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS 250

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    EAL LF   Q  G++ + + ++  + AC  L AL  G+Q   ++    F  N   
Sbjct: 251 NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 310

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYAKCG  V+A+ VF  + +K++++WN MI G            L  +M+++G+
Sbjct: 311 GTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGV 370

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             N+ T+I +L +C+H G+++ G+ YF  M K +++ P + HY CM+D+L RAGL+ EA+
Sbjct: 371 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAH 430

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            L+ +MP  A A + G+LL  C+ +RN ELAE   KQL  +EP N+GN+++LSNIY+   
Sbjct: 431 QLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRG 490

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RWE+ A+ R  ++   V+K  + SWVE +GK        ++HP   +IY KL++L  EMK
Sbjct: 491 RWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMK 550

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY+P TE  + DVED  K+  L+HHSEKLA+ F L+   PG  IR+ KNLR+C DCH+
Sbjct: 551 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHT 610

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  SRI  RE IVRD NRFH F +GSCSC D+W
Sbjct: 611 AIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/589 (40%), Positives = 353/589 (59%), Gaps = 14/589 (2%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           A+ S  ++    + +T    ++ C   RA   G +    +   G        N+LIN Y 
Sbjct: 48  AMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYV 107

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
           K  L++ A ++FD+MPQR ++SW T+I +Y+     Q+A+ L + MLR+   P + +T S
Sbjct: 108 KFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP-NVYTYS 166

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           SVL +C    DV   + LH   +K  ++ +VFV +AL+DV+AK G   DA  VF+ M   
Sbjct: 167 SVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + + W+S++ GF QN   + AL LF+R +  G    Q T++SV+ AC GLA L  G Q H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             + K  +  ++   ++LVDMY KCG + DA  VF+ ++E++V+ W+TMISG +++  S 
Sbjct: 284 VHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQ 341

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LFE+M+ +G  PN  T + VL ACSH G++E G  YF  M K + + P   HY CM
Sbjct: 342 EALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCM 401

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           ID+LG+AG + +A  L+  M  +  A  W +LL +CR  RN+ LAE AAK++  ++P++A
Sbjct: 402 IDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDA 461

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           G + LLSNIYA +++W+ V   R  +RD  +KKE   SW+E+         G  +HP+I 
Sbjct: 462 GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIV 521

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           E+  KL +L+  +  +GY PET   L D+E  + ++ L HHSEKLAL FGLM L     I
Sbjct: 522 EVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVI 581

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RI KNLRICGDCH F K AS++  R  ++RD  R+HHF +G CSC D+W
Sbjct: 582 RIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/582 (39%), Positives = 353/582 (60%), Gaps = 30/582 (5%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
            A A         +  C   RA   G+  HA+++  G       +  L+  Y++CG +  
Sbjct: 29  GAGAARFHDYDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALED 88

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           AR V D MP+R +VSW  +I  Y+ N R  +A  LFI MLR G                 
Sbjct: 89  ARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAG----------------- 131

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
               + + KQ+H FA+K   + ++FVG++LLD+YAK   I +A RVF+ +P R+ V++++
Sbjct: 132 ----IHQVKQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTA 187

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           +++G+ Q  L EEAL LFR     G++ NQ T ++++ A +GL+++  GKQVH ++ +  
Sbjct: 188 ILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRE 247

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
               M   +SL+DMY+KCG ++ +  VF  + E++VV WN M+ G+ RH  + EV+ LF 
Sbjct: 248 LPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFR 307

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            M    + P+  T ++VLS  SH G+V++G   FD +VK+ + L N  HY C+ID+LGR+
Sbjct: 308 SMCDE-VKPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRS 366

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G + +A +LI  MPF  T ++WGSLL +CR + N+ + E  A++L  +EP+NAGN+++LS
Sbjct: 367 GQLQKALNLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILS 426

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLE 498
           NIYAA   W++V R RKL+    V KE  +SW+ +          +R HPR  +I +K++
Sbjct: 427 NIYAAAGMWKDVFRVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIK 486

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           ++   +K  G+ P+    LHDV+D +K+ +L+ HSEKLA+TFGLM     + I++MKNLR
Sbjct: 487 EIYVAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLR 546

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           IC DCH+F KF S++ GRE  +RD NRFH  T G+C+C D+W
Sbjct: 547 ICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 588


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/584 (40%), Positives = 350/584 (59%), Gaps = 12/584 (2%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
            A  N   LS+L +T  +    R    G+  H  I   G  +D L SN LI  Y K   +
Sbjct: 147 GARPNQFTLSSLVSTATNMGDLR---YGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCV 203

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
               KVF+ M    +VSWN ++  +  +        +F  ML EG  P + FT  SVL +
Sbjct: 204 EDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKP-NMFTFISVLRS 262

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           C++  D    KQ+H   +K + D + FVGTAL+D+YAK   + DA   F+ +  R+  +W
Sbjct: 263 CSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSW 322

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           + +++G+ Q +  E+A+  FR+ Q  G++ N++T++S +  C+ +A L  G+Q+HAV  K
Sbjct: 323 TVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVK 382

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            G   ++F  S+LVD+Y KCGC+  A  +F G+  +++V WNT+ISG+S+H +  + +  
Sbjct: 383 AGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEA 442

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M   G+ P+E T+I VLSACS +G+VE+GK  FD M K + + P++ HY+CM+DILG
Sbjct: 443 FRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILG 502

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG  +E    I  M     + +W ++L +C+ + N++  E AAK+LF MEP    +++L
Sbjct: 503 RAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYIL 562

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           LSNI+A+  RW++V   R L+    +KKE   SWVE+ G+         +HP+I EIY+K
Sbjct: 563 LSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAK 622

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L+KL + +  +GY P+TE  LH+V +  K E L +HSE+LAL+F L+      PIRI KN
Sbjct: 623 LDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKN 682

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LRIC DCH FMK  S I  +E +VRD+ RFHHF  G+CSC D W
Sbjct: 683 LRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 207/407 (50%), Gaps = 5/407 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+ CA   +   GKV HA  +  G   D      L++ YSKCG +  A KVF ++
Sbjct: 53  TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI 112

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +V+W+ +I      G  QEA  LF  M R+G  P ++FT+SS++       D+   
Sbjct: 113 RNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARP-NQFTLSSLVSTATNMGDLRYG 171

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H    K   + +  V   L+ +Y K   + D ++VFE+M   + V+W+++++GF  +
Sbjct: 172 QSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDS 231

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +       +F +  + G + N FT  SV+ +C+ L     GKQVHA + K     + F  
Sbjct: 232 QTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG 291

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAK  C+ DA   F  +  +++  W  +ISG+++  ++ + +  F +MQ+ G+ 
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIK 351

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PNE T  S LS CSH+  +E G+    + VK  +   ++F  S ++D+ G+ G +  A  
Sbjct: 352 PNEYTLASCLSGCSHMATLENGRQLHAVAVKAGH-FGDIFVGSALVDLYGKCGCMEHAEA 410

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNA 439
           +   +      S W ++++    +   E A  A + +   G+ PD A
Sbjct: 411 IFKGLISRDIVS-WNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEA 456



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 171/315 (54%), Gaps = 5/315 (1%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A ++F  MP++  VSWN ++  Y   G  ++ + LF  M +E +T +S+FT+S+VL  CA
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKM-KECETKFSKFTLSTVLKGCA 62

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
               + E K LH  AL++  + + F+G +L+D+Y+KCG + DA +VF  +   + V WS+
Sbjct: 63  NTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSA 122

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+ G  Q    +EA  LF   +  G   NQFT+SS++     +  L  G+ +H  +CK G
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYG 182

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           F S+   ++ L+ MY K  CV D   VF  +   ++V WN ++SGF           +F 
Sbjct: 183 FESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M   G  PN  T+ISVL +CS +   E GK     ++K  +   + F  + ++D+  +A
Sbjct: 243 QMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSD-DDDFVGTALVDMYAKA 301

Query: 387 GLIHE---AYDLILN 398
             + +   A+D ++N
Sbjct: 302 RCLEDAGVAFDRLVN 316


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/542 (41%), Positives = 342/542 (63%), Gaps = 18/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ NI+I  Y++ GL+S AR++F+E+P R + +W  ++  +  NG   EA  +F  M 
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +     +E + ++++      + + + ++L          RN      ++  YA+CG I
Sbjct: 305 EK-----NEVSWNAMIAGYVQSQQIEKAREL----FDQMPSRNTSSWNTMVTGYAQCGNI 355

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  +F+ MP+R+ ++W++M++G+ Q+   EEAL LF + +  G   N+  ++  + +C
Sbjct: 356 DQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSC 415

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  GKQ+H  L K GF +   A ++L+ MY KCG + +A+ VF  I EK++V WN
Sbjct: 416 AEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWN 475

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    E + LFE M+   + P++ T + VLSACSH G V+KG  YF+ M + 
Sbjct: 476 TMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQN 534

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + +  N  HY+CMID+LGRAG + EA +L+ +MPF   A+ WG+LL + R + + EL E 
Sbjct: 535 YGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEK 594

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR- 485
           AA+++F MEPDN+G ++LLSN+YAA+ RW EV   R  +RD  VKK    SWVEI+ K  
Sbjct: 595 AAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTH 654

Query: 486 -------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                  +HP    IY+ LE+L  E+KK G+   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 655 IFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAV 714

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FG++ + PG PIR++KNLR+C DCH+ +K  S+I  R+ IVRD NRFHHF+ GSCSC D
Sbjct: 715 AFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGD 774

Query: 599 FW 600
           +W
Sbjct: 775 YW 776



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 187/383 (48%), Gaps = 36/383 (9%)

Query: 55  CHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR 114
           C  K+     + D ++ N++++ Y K G +S AR +F++MP++ +VSWN ++  +  NG 
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCA-CAAKRDVFECKQ----------LHVFALK 163
            +EA  +F  ML + +  ++    + V        R +F+ K           +  +  K
Sbjct: 169 VEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 164 AAMD-----------RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +D           R+      ++  YA+ GL+S+A R+FE +P R+   W++MV+GFV
Sbjct: 229 KRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFV 288

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSN 270
           QN + +EA  +F        E N+ + +++I      A  +Q +Q+     L       N
Sbjct: 289 QNGMLDEATRIFEEMP----EKNEVSWNAMI------AGYVQSQQIEKARELFDQMPSRN 338

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
             + +++V  YA+CG +  A  +F  + +++ + W  MISG+++  +S E + LF KM++
Sbjct: 339 TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G   N       LS+C+ I  +E GK     +VK           + ++ + G+ G I 
Sbjct: 399 DGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIE 457

Query: 391 EAYDLILNMPFDATASMWGSLLA 413
           EA+D+  ++      S W +++A
Sbjct: 458 EAFDVFEDITEKDIVS-WNTMIA 479



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 14/183 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S L   L SCA   A   GK  H +++  G     +  N L+  Y KCG I  A  VF++
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFED 465

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ IVSWNT+I  Y  +G  +EA+ALF +M    K    + T+  VL AC+     F 
Sbjct: 466 ITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKP--DDVTLVGVLSACS--HTGFV 521

Query: 154 CKQLHVFALKAAMDRNVFVG------TALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
            K +  F    +M +N  +       T ++D+  + G + +A  + +SMP   +  TW +
Sbjct: 522 DKGMEYF---NSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 207 MVA 209
           ++ 
Sbjct: 579 LLG 581



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 139/340 (40%), Gaps = 66/340 (19%)

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           IV WN  I +Y   G+ + A+++F  M R     Y+   +S  L       + F+C    
Sbjct: 60  IVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAM-ISGYLS-----NNKFDC---- 109

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                                         A +VFE MP+R+ ++W+ M++G+V+N    
Sbjct: 110 ------------------------------ARKVFEKMPDRDLISWNVMLSGYVKNGNLS 139

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASS 276
            A  LF          NQ     V+   A L+   Q   V     +       N  + + 
Sbjct: 140 AARALF----------NQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG 189

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+  Y + G + DA  +F    +  +V WN ++ G+ R  R  +   LF++M       +
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----D 245

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + ++  +++  +  G++ + +  F+ +      + +VF ++ M+    + G++ EA  + 
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEEL-----PIRDVFAWTAMVSGFVQNGMLDEATRIF 300

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
             MP     S W +++A     + +E     A++LF   P
Sbjct: 301 EEMPEKNEVS-WNAMIAGYVQSQQIE----KARELFDQMP 335


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/607 (38%), Positives = 362/607 (59%), Gaps = 48/607 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS-------G 86
           +   + L+SCA       G+  H  II +GL+ D  T N L+N YSK   +        G
Sbjct: 107 NVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLG 166

Query: 87  ARKVFDE-------------------------MPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           A +VFDE                         MP++ +VSWNTII     NG  +E + +
Sbjct: 167 AGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
              M      P S FT+SSVL   A   D+   K++H  +++  +D +++V ++L+D+YA
Sbjct: 227 IREMGGANLKPDS-FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYA 285

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KC  ++D+ RVF  + ER+ ++W+S++AG VQN L++E L  FR+  +  ++   ++ SS
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           ++ ACA L  L  GKQ+H  + + GF  N+F ASSLVDMYAKCG +  A  +F  +  ++
Sbjct: 346 IMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +V W  MI G + H ++ + + LFE+M+  G+        +VL+ACSH G+V++   YF+
Sbjct: 406 MVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFN 458

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M +   + P V HY+ + D+LGRAG + EAYD I  M    T S+W +LL++CR ++N+
Sbjct: 459 SMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNI 518

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ++AE  A ++  ++P+N G ++LL+NIY+A RRW+E A+ R  +R   ++K  + SW+E+
Sbjct: 519 DMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEV 578

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           K        G  +HP   +I   +E LVE M+K GY P+T    HDVE+ +K+ L+  HS
Sbjct: 579 KNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHS 638

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           E+LA+ FG++    G+ IR+ KNLR+C DCH+  KF S+I GRE +VRD +RFHHF NG+
Sbjct: 639 ERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGT 698

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 699 CSCGDYW 705



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 187/371 (50%), Gaps = 35/371 (9%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            YS   L+  + ++F+ +     ++W ++I  YT++G   +++  FI ML  G  P    
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYP-DHN 107

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR----- 191
              SVL +CA   D+   + LH + ++  +D +++ G AL+++Y+K   + ++ R     
Sbjct: 108 VFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGA 167

Query: 192 ---------------------------VFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
                                      +FE MPE++ V+W++++AG  +N LYEE L + 
Sbjct: 168 GEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMI 227

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           R      L+ + FT+SSV+   A    + +GK++H    + G  ++++ ASSL+DMYAKC
Sbjct: 228 REMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKC 287

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
             V D+  VF+ + E++ + WN++I+G  ++    E +  F +M  A + P   ++ S++
Sbjct: 288 TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIM 347

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            AC+H+  +  GK     + + +    N+F  S ++D+  + G I  A  +   M     
Sbjct: 348 PACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 405 ASMWGSLLASC 415
            S W +++  C
Sbjct: 407 VS-WTAMIMGC 416



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 44/293 (15%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+   L+ D+ R+F ++     + W S++  +  + L  ++L  F      GL  +   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK-------------CG 285
             SV+ +CA L  L  G+ +H  + + G   +++  ++L++MY+K              G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 286 CVVDAYF-------------------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
            V D                      +F  + EK++V WNT+I+G +R+    E + +  
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M  A L P+  T  SVL   +    + +GK      ++Q  +  +++  S +ID+  + 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ-GLDADIYVASSLIDMYAKC 287

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASC----------RNYRNLELAEIAAK 429
             + ++   +  +  +     W S++A C          R +R + +A+I  K
Sbjct: 288 TRVADSCR-VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPK 339


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/575 (40%), Positives = 359/575 (62%), Gaps = 12/575 (2%)

Query: 35  TLQATLQSCARERAPVRG-KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  A + +C   ++ +RG K     +I  GL+ D    N ++  + KCG++  AR++FDE
Sbjct: 133 TYDALVSACIGLKS-IRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDE 191

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP++ I+SWNTIIG     G   EA  LF+ M +      S   V+ ++ A A    +F 
Sbjct: 192 MPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVT-MIRASAGLGLIFA 250

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +QLH  +LK  +  +VFV  AL+D+Y+KCG I DA  VF+ MPE+  V W+S++AG+  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   EEAL ++   +  G++ + FT S +I  CA LA+L   KQ HA L + GFG ++ A
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LVD+Y+K G + DA  VF  +  KNV+ WN +I+G+  H R VE + +FE+M   G+
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T+++VLSACS+ G+ ++G   F+ M + H + P   HY+CMI++LGR GL+ EA+
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI + PF  T +MW +LL +CR ++N EL + AA++L+GM P+   N+++L NIY  + 
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSG 550

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           R EE A   + ++   ++   + SW+EIK        G + H +  EIY KL++L+ E+ 
Sbjct: 551 RLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEIS 610

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K GY P+ +  L DV D +++ +L++HSEKLA+ FGL+      P++I+++ RICGDCHS
Sbjct: 611 KHGYVPQXKFLLPDV-DEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHS 669

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  + +  RE +VRD +RFHHF +GSCSC D+W
Sbjct: 670 AIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 182/352 (51%), Gaps = 15/352 (4%)

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
           R  EA+ LF  +   G       T  +++ AC   + +   K++  + + + +D + ++ 
Sbjct: 110 RYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
             +L ++ KCG++ DA R+F+ MPE+N ++W++++ G V    Y EA  LF        +
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSD 229

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
                  ++I A AGL  +  G+Q+H+   KTG G ++F A +L+DMY+KCG + DA  V
Sbjct: 230 AGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCV 289

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  + EK  V WN++I+G++ H  S E + ++ +M+ +G+  +  T+  ++  C+ +  +
Sbjct: 290 FDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASL 349

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           E  K     +V+ H    ++   + ++D+  + G I +A  +   MP     S W +L+A
Sbjct: 350 EHAKQAHAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVIS-WNALIA 407

Query: 414 SCRNY-RNLELAEIAAKQLF-GMEPDNAGNHLLLSNIYAA-------NRRWE 456
              N+ R +E  E+  + L  GM P    NH+    + +A       +R WE
Sbjct: 408 GYGNHGRGVEAVEMFERMLHEGMVP----NHVTFLAVLSACSYSGLSDRGWE 455


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/577 (40%), Positives = 335/577 (58%), Gaps = 13/577 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++    R+P+ GK  HA  +  G  +D        + YSK GL   ARK+FDEM
Sbjct: 110 TFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEM 169

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R I +WN  + +    GR  +A+  FI    EG  P +  T  + L ACA    +   
Sbjct: 170 PERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEP-NLITFCAFLNACAGASYLRLG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH F L++  + +V V   L+D Y KC  +  +  +F  + + N+V+W SM+  +VQN
Sbjct: 229 RQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  E+A ++F RA+  G+E   F +SSV+ ACAGL+ L  GK VH +  K     N+F  
Sbjct: 289 DEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVG 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S+LVDMY KCG + DA   F  + E+N+V WN MI G++   ++   + LF++M   G H
Sbjct: 349 SALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM-TCGSH 407

Query: 335 ---PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
              PN  T++ VLSACS  G V  G   F+ M  ++ + P   HY+C++D+LGRAG++ +
Sbjct: 408 RVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQ 467

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY  I  MP   T S+WG+LL + + +   EL ++AA  LF ++P ++GNH+LLSN++AA
Sbjct: 468 AYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAA 527

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEE 503
             RWEE    RK ++D  +KK    SW+              +H R +EI + L KL  E
Sbjct: 528 AGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGE 587

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M+  GY P+T   L D+E+  K   + +HSEK+AL FGL+ +  GVPIRI KNLRICGDC
Sbjct: 588 MEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDC 647

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HS +KF S I GRE IVRD N FH F +  CSC D+W
Sbjct: 648 HSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 198/369 (53%), Gaps = 5/369 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNND--TLTSNILINFYSKCGLISGARKVF 91
           ++L + ++S    +    G+  HA+II   L+N   +   N L+N YSK    + A+ + 
Sbjct: 7   NSLASLVESAVSTQCSRLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNSAQLLL 65

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
              P R +V+W  +I     NGR   A+  F NM R+   P ++FT      A  + R  
Sbjct: 66  SLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQP-NDFTFPCAFKASGSLRSP 124

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              KQ+H  A+KA    +VFVG +  D+Y+K GL  +A ++F+ MPERN  TW++ ++  
Sbjct: 125 LVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNS 184

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V    Y++AL  F   +  G E N  T  + + ACAG + L  G+Q+H  + ++GF +++
Sbjct: 185 VLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADV 244

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             A+ L+D Y KC  V  +  +FSGI + N V W +MI  + ++    +  ++F + ++ 
Sbjct: 245 SVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKE 304

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P +    SVLSAC+ + ++E GKS   L VK   V+ N+F  S ++D+ G+ G I +
Sbjct: 305 GIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKA-CVVGNIFVGSALVDMYGKCGSIED 363

Query: 392 AYDLILNMP 400
           A      MP
Sbjct: 364 AERAFDEMP 372



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 5/290 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L T  A L +CA       G+  H  ++  G   D   +N LI+FY KC  +  +  +F 
Sbjct: 209 LITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFS 268

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            + +   VSW ++I SY  N  E++A  +F+   +EG  P ++F VSSVL ACA    + 
Sbjct: 269 GISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEP-TDFMVSSVLSACAGLSVLE 327

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             K +H  A+KA +  N+FVG+AL+D+Y KCG I DA R F+ MPERN VTW++M+ G+ 
Sbjct: 328 VGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYA 387

Query: 213 QNELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGS 269
                + A+ LF         +  N  T   V+ AC+   ++  G ++  ++  + G   
Sbjct: 388 HQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEP 447

Query: 270 NMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARS 318
                + +VD+  + G V  AY F+        V +W  ++       +S
Sbjct: 448 GAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKS 497


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 346/575 (60%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            T+   L+S +R   P+R G+  HA+ + +  + +      L++ Y+KCGL+  A++VFDE
Sbjct: 527  TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 586

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            MP    V W  +I +Y   G  +EAV +  N    G  P S FT   VL ACA   D+  
Sbjct: 587  MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDS-FTAVRVLTACARIADLAT 645

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             + +   A +  + ++VFV TA +D+Y KCG ++ A  VF+ M  ++ V W +MV G+  
Sbjct: 646  GETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS 705

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N    EAL LF   Q  G++ + + ++  + AC  L AL  G+Q   ++    F  N   
Sbjct: 706  NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 765

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             ++L+DMYAKCG  V+A+ VF  + +K++++WN MI G            L  +M+++G+
Sbjct: 766  GTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGV 825

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
              N+ T+I +L +C+H G+++ G+ YF  M K +++ P + HY CM+D+L RAGL+ EA+
Sbjct: 826  KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAH 885

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             L+ +MP  A A + G+LL  C+ +RN ELAE   KQL  +EP N+GN+++LSNIY+   
Sbjct: 886  QLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRG 945

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
            RWE+ A+ R  ++   V+K  + SWVE +GK        ++HP   +IY KL++L  EMK
Sbjct: 946  RWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMK 1005

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             +GY+P TE  + DVED  K+  L+HHSEKLA+ F L+   PG  IR+ KNLR+C DCH+
Sbjct: 1006 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHT 1065

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +K  SRI  RE IVRD NRFH F +GSCSC D+W
Sbjct: 1066 AIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 347/608 (57%), Gaps = 43/608 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T  +  +SC + R    GK  HA ++ +GL ++      LIN Y++ G            
Sbjct: 130 TFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKS 189

Query: 83  ----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                     LI+G         AR++FDE+P R +VSWN +I  Y  +GR +EA+A F 
Sbjct: 190 SMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFE 249

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAK 182
            M R   TP    T+ SVL ACA      +    +  +     +  N+ +   L+D+Y K
Sbjct: 250 EMRRAKVTPNVS-TMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVK 308

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG + +AS +FE + ++N V+W+ M+ G+     Y+EAL LFRR     ++ N  T  S+
Sbjct: 309 CGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSI 368

Query: 243 ICACAGLAALIQGKQVHAVLCKT--GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           + ACA L AL  GK VHA + K      + +   +SL+DMYAKCG +  A  +F  +  K
Sbjct: 369 LPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTK 428

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++  WN MISGF+ H  +   + LF +M   G  P++ T++ VL+AC H G++  G+ YF
Sbjct: 429 SLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYF 488

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             M++ + V P + HY CMID+ GRAGL  EA  L+ NM      ++W SLL +CR +R 
Sbjct: 489 SSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRR 548

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           +ELAE  AK LF +EP+N   ++LLSNIYA   RWE+VA+ R  + D+ +KK    S +E
Sbjct: 549 IELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIE 608

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           +         G + HP+  EIY  L+++   ++K G+ P+T   L+D+++  K+ +L HH
Sbjct: 609 VDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHH 668

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ FGL+   PG  IRIMKNLR+CG+CHS  K  S+I  RE I RD NRFHHF +G
Sbjct: 669 SEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 728

Query: 593 SCSCWDFW 600
           SCSC D+W
Sbjct: 729 SCSCKDYW 736



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 190/370 (51%), Gaps = 36/370 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  H++II  GL+N     + LI F   S  G +S A  +F  +     V WN +I   +
Sbjct: 45  KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLS 104

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           ++     A+  +++M+  G  P +E+T  S+  +C   R   E KQ+H   LK  ++ N 
Sbjct: 105 SSESPFLALEYYVHMISSGTEP-NEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNA 163

Query: 171 FVGTALLDVYAKC-------------------------------GLISDASRVFESMPER 199
           FV T+L+++YA+                                G + +A  +F+ +P R
Sbjct: 164 FVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVR 223

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQV 258
           + V+W++M++G+ Q+   EEA+  F   +   +  N  T+ SV+ ACA   + +Q G  V
Sbjct: 224 DVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWV 283

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
            + +   G GSN+   + L+DMY KCG + +A  +F  I++KNVV WN MI G++  +  
Sbjct: 284 RSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCY 343

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYS 377
            E + LF +M Q+ + PN+ T++S+L AC+++G ++ GK     + K    + N V  ++
Sbjct: 344 KEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWT 403

Query: 378 CMIDILGRAG 387
            +ID+  + G
Sbjct: 404 SLIDMYAKCG 413


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/643 (38%), Positives = 366/643 (56%), Gaps = 62/643 (9%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           + I    A    +++ ++   L +CA  +A  + K  H+  I  G   D    N LI+ Y
Sbjct: 245 TTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTY 304

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE---------- 128
           +KCG +  A  VF+ M  + +VSWN ++  YT +G+   A  LF NM +E          
Sbjct: 305 AKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWS 364

Query: 129 -------------------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK 163
                                    G  P S  T+ S+L ACA+   + +  + H ++LK
Sbjct: 365 AVIAGYAQRGYGQEALDTFQQMILYGSEPNS-VTIISLLSACASLGALSQGMETHAYSLK 423

Query: 164 AAM------------DRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVA 209
             +              ++ V  AL+D+Y+KC     A  +F S+P  ERN VTW+ M+ 
Sbjct: 424 KCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIG 483

Query: 210 GFVQNELYEEALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           G+ Q     +AL LF    ++   +  N +TIS ++ ACA L++L  GKQ+HA + +   
Sbjct: 484 GYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHE 543

Query: 268 --GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
              S  F A+ L+DMY+KCG V  A  VF  + ++N V W +M+SG+  H R  E + +F
Sbjct: 544 YESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIF 603

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           +KMQ+AG  P++ +++ +L ACSH GMV++G  YFD+M   + V+ +  HY+C+ID+L R
Sbjct: 604 DKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLAR 663

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           +G + +A+  I  MP + +A++W +LL++CR + N+ELAE A  +L  M+ +N G++ L+
Sbjct: 664 SGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLI 723

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKL 497
           SNIYA  RRW++VAR R+L++ S +KK    SWV+ K        G R+HP   EIYS L
Sbjct: 724 SNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLL 783

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           E+L+  +K +GY PET   LHDV+D  K  LL  HSEKLAL +GL+   PG PIRI KNL
Sbjct: 784 ERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNL 843

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+CGDCHS   + S+I   E IVRD +RFHHF NGSCSC  +W
Sbjct: 844 RVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/473 (28%), Positives = 224/473 (47%), Gaps = 63/473 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C    +   G   H  I   G  ++    N L+  YS+ G +  A  VFDE+
Sbjct: 151 TLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEI 210

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINM---LREGKTPYSEFTVS--SVLCACA 146
            ++ I   +SWN+I+ ++      + A+ LF  M   + E  T      +S  ++L ACA
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACA 270

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + + + K++H +A++     + FV  AL+D YAKCG + DA  VF  M  ++ V+W++
Sbjct: 271 SLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNA 330

Query: 207 MVAGFVQN-------ELY----------------------------EEALILFRRAQVLG 231
           MV G+ Q+       EL+                            +EAL  F++  + G
Sbjct: 331 MVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYG 390

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS------------NMFAASSLVD 279
            E N  TI S++ ACA L AL QG + HA   K    S            ++   ++L+D
Sbjct: 391 SEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALID 450

Query: 280 MYAKCGCVVDAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHP 335
           MY+KC     A  +F+ I   E+NVV W  MI G++++  S + + LF +M  +   + P
Sbjct: 451 MYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAP 510

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYD 394
           N  T   +L AC+H+  +  GK     + + H    +V F  +C+ID+  + G +  A +
Sbjct: 511 NAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARN 570

Query: 395 LILNMPFDATASMWGSLLASCRNY-RNLELAEIAAK-QLFGMEPDNAGNHLLL 445
           +  +MP     S W S+++    + R  E  +I  K Q  G  PD+    +LL
Sbjct: 571 VFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 45/323 (13%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y  CG  S A  V + +     V WN ++ ++   GR   A+ +   MLR G  P   FT
Sbjct: 93  YLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKP-DHFT 151

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +   L AC            H        + NVFV  AL+ +Y++ G + DAS VF+ + 
Sbjct: 152 LPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEIT 211

Query: 198 ER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE------YNQFTISSVICACAG 248
            +   + ++W+S+VA  V+      AL LF     +  E       +  +I +++ ACA 
Sbjct: 212 RKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACAS 271

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L AL Q K++H+   + G  ++ F  ++L+D YAKCG + DA  VF+ +E K+VV WN M
Sbjct: 272 LKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAM 331

Query: 309 ISGFSRHAR-----------------------------------SVEVMILFEKMQQAGL 333
           ++G+++  +                                     E +  F++M   G 
Sbjct: 332 VTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGS 391

Query: 334 HPNEQTYISVLSACSHIGMVEKG 356
            PN  T IS+LSAC+ +G + +G
Sbjct: 392 EPNSVTIISLLSACASLGALSQG 414



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 120/251 (47%), Gaps = 13/251 (5%)

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +GT ++  Y  CG  SDA  V E +     V W+ +V   ++    + A+ +  R    G
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            + + FT+   + AC  L +   G   H ++C  GF SN+F  ++LV MY++ G + DA 
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDAS 204

Query: 292 FVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH---PNEQTYI---- 341
            VF  I  K   +V+ WN++++   + +     + LF +M    +H    NE++ I    
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTI-VHEKATNERSDIISIV 263

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++L AC+ +  + + K      ++ +    + F  + +ID   + G + +A ++   M F
Sbjct: 264 NILPACASLKALPQTKEIHSYAIR-NGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEF 322

Query: 402 DATASMWGSLL 412
               S W +++
Sbjct: 323 KDVVS-WNAMV 332


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/571 (41%), Positives = 348/571 (60%), Gaps = 10/571 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP-QRC 98
           L+SC   RA   G+  HA+++  GL  D + +  L++ Y+ CGL+S AR++FDEMP Q  
Sbjct: 70  LRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGN 129

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  WN +I +Y  +G  + A+ L+  ML  G      FT   VL ACAA  D+   +++H
Sbjct: 130 VFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVH 189

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              ++ +   +VFV   L+D+YAKCG + +A  VF+S   R+ V W+SM+A   QN    
Sbjct: 190 DRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPA 249

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL L R     G+     T+ S I A A   AL +G+++H    + GFGS     +SL+
Sbjct: 250 EALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLL 309

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNE 337
           DMYAK G V  A  +F  +  + ++ WN MI GF  H  +     LF +M+ +A + P+ 
Sbjct: 310 DMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDH 369

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VLSAC+H GMV++ K  FDLMV  +++ P V HY+C++D+LG +G   EA D+I 
Sbjct: 370 ITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIK 429

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            M     + +WG+LL  C+ ++N+ELAE+A  +L  +EP++AGN++LLSNIYA + +WEE
Sbjct: 430 GMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEE 489

Query: 458 VARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGY 509
            AR RKL+ +  +KK  + SW+E+KGK +        HPR  EIY +LE+L   + + GY
Sbjct: 490 AARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGY 549

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+T    H+VED  K+ ++  HSE+LA+ FGL+   PG  + + KNLR+C DCH  +K 
Sbjct: 550 VPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKL 609

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S+I  RE I+RD+NR+HHF NG CSC D W
Sbjct: 610 ISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 2/228 (0%)

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           PY+    +++L +C   R V   +QLH   L + +  +  + T L+D+YA CGL+S A R
Sbjct: 60  PYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARR 119

Query: 192 VFESMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGL 249
           +F+ MP +  V  W+ ++  + ++   E A+ L+R     G +E + FT   V+ ACA L
Sbjct: 120 LFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAAL 179

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             L  G++VH  + +T + +++F  + L+DMYAKCGCV +A+ VF     ++ V+WN+MI
Sbjct: 180 LDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMI 239

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +   ++ R  E + L   M   G+ P   T +S +SA +  G + +G+
Sbjct: 240 AACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGR 287



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 139/293 (47%), Gaps = 11/293 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA       G+  H +++      D      LI+ Y+KCG +  A  VFD  
Sbjct: 168 TYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDST 227

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  V WN++I +   NGR  EA+AL  NM  EG  P +  T+ S + A A    +   
Sbjct: 228 TVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAP-TIVTLVSAISAAADAGALPRG 286

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           ++LH +  +        + T+LLD+YAK G ++ A  +F+ +  R  ++W++M+ GF  +
Sbjct: 287 RELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMH 346

Query: 215 ELYEEALILFRR----AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
              + A  LFRR    AQV+    +  T   V+ AC     + + K+V  ++        
Sbjct: 347 GHADHACELFRRMRNEAQVMP---DHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKP 403

Query: 271 MFAA-SSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEV 321
           M    + LVD+    G   +A  V  G+  K +  +W  +++G   H ++VE+
Sbjct: 404 MVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIH-KNVEL 455


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/629 (38%), Positives = 360/629 (57%), Gaps = 60/629 (9%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +++ ++   L +C   +A  + K  H   I  G   D    N LI+ Y+KCGL+  A KV
Sbjct: 263 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKV 322

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE---------------------- 128
           F+ M  + +VSWN ++  Y+ +G  + A  LF NM +E                      
Sbjct: 323 FNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCS 382

Query: 129 -------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM--------- 166
                        G  P +  T+ SVL ACA+     +  ++H ++LK  +         
Sbjct: 383 HEALNLFRQMIFSGSLP-NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGG 441

Query: 167 -DRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALIL 223
            D ++ V  AL+D+Y+KC     A  +F+ +P  ERN VTW+ M+ G  Q     +AL L
Sbjct: 442 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 501

Query: 224 FRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLVD 279
           F    ++  G+  N +TIS ++ ACA LAA+  GKQ+HA + +      S  F A+ L+D
Sbjct: 502 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLID 561

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KCG V  A  VF  + +K+ + W +M++G+  H R  E + +F+KM++AG  P++ T
Sbjct: 562 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 621

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++ VL ACSH GMV++G SYFD M   + + P   HY+C ID+L R+G + +A+  + +M
Sbjct: 622 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 681

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA +W +LL++CR + N+ELAE A  +L  M  +N G++ L+SNIYA   RW++VA
Sbjct: 682 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 741

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R R L++ S +KK    SWV+ +        G R+HP   +IY+ LE L++ +K +GY P
Sbjct: 742 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 801

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           ET   LHDV++  K  LL+ HSEKLAL +GL+   PG PIRI KNLR+CGDCHS   + S
Sbjct: 802 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 861

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I   E +VRD +RFHHF NGSCSC  +W
Sbjct: 862 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 211/436 (48%), Gaps = 59/436 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C    +   G   H  I   G  ++    N L+  YS+CG +  A  +FDE+
Sbjct: 157 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 216

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSE----FTVSSVLCACA 146
            QR I   +SWN+I+ ++  +     A+ LF  M L   + P +E     ++ ++L AC 
Sbjct: 217 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 276

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + V + K++H  A++     +VFVG AL+D YAKCGL+ +A +VF  M  ++ V+W++
Sbjct: 277 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 336

Query: 207 MVAGFVQNELYE-----------------------------------EALILFRRAQVLG 231
           MVAG+ Q+  +E                                   EAL LFR+    G
Sbjct: 337 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 396

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT----------GFGSNMFAASSLVDMY 281
              N  TI SV+ ACA L A  QG ++HA   K           G   ++   ++L+DMY
Sbjct: 397 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 456

Query: 282 AKCGCVVDAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNE 337
           +KC     A  +F  I  EE+NVV W  MI G +++  S + + LF +M  +  G+ PN 
Sbjct: 457 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 516

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLI 396
            T   +L AC+H+  +  GK     +++ H    +  F  +C+ID+  + G +  A  + 
Sbjct: 517 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 576

Query: 397 LNMPFDATASMWGSLL 412
            +M    +A  W S++
Sbjct: 577 DSMS-QKSAISWTSMM 591



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 151/323 (46%), Gaps = 45/323 (13%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y  CG    A  V + +     V WN +I  +   GR   A+ +   MLR G  P   FT
Sbjct: 99  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP-DHFT 157

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +  VL AC            H        + NVF+  AL+ +Y++CG + +AS +F+ + 
Sbjct: 158 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 217

Query: 198 ER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE------YNQFTISSVICACAG 248
           +R   + ++W+S+V+  V++     AL LF +  ++  E       +  +I +++ AC  
Sbjct: 218 QRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGS 277

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L A+ Q K+VH    + G   ++F  ++L+D YAKCG + +A  VF+ +E K+VV WN M
Sbjct: 278 LKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 337

Query: 309 ISGFSRHAR-----------------------------------SVEVMILFEKMQQAGL 333
           ++G+S+                                      S E + LF +M  +G 
Sbjct: 338 VAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGS 397

Query: 334 HPNEQTYISVLSACSHIGMVEKG 356
            PN  T ISVLSAC+ +G   +G
Sbjct: 398 LPNCVTIISVLSACASLGAFSQG 420



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 129/271 (47%), Gaps = 17/271 (6%)

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +GT ++  Y  CG    A  V E +     V W+ ++   ++    + A+ +  R    G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              + FT+  V+ AC  L +   G   H ++C  GF SN+F  ++LV MY++CG + +A 
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 210

Query: 292 FVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH---PNEQ----TYI 341
            +F  I ++   +V+ WN+++S   + + +   + LF KM    +H    NE+    + +
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI-VHEKPTNERSDIISIV 269

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++L AC  +  V + K      ++ +   P+VF  + +ID   + GL+  A  +   M F
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIR-NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 328

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLF 432
               S W +++A      N E    AA +LF
Sbjct: 329 KDVVS-WNAMVAGYSQSGNFE----AAFELF 354


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 346/575 (60%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            T+   L+S +R   P+R G+  HA+ + +  + +      L++ Y+KCGL+  A++VFDE
Sbjct: 551  TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 610

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            MP    V W  +I +Y   G  +EAV +  N    G  P S FT   VL ACA   D+  
Sbjct: 611  MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDS-FTAVRVLTACARIADLAT 669

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             + +   A +  + ++VFV TA +D+Y KCG ++ A  VF+ M  ++ V W +MV G+  
Sbjct: 670  GETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYAS 729

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N    EAL LF   Q  G++ + + ++  + AC  L AL  G+Q   ++    F  N   
Sbjct: 730  NGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 789

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             ++L+DMYAKCG  V+A+ VF  + +K++++WN MI G            L  +M+++G+
Sbjct: 790  GTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGV 849

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
              N+ T+I +L +C+H G+++ G+ YF  M K +++ P + HY CM+D+L RAGL+ EA+
Sbjct: 850  KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAH 909

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             L+ +MP  A A + G+LL  C+ +RN ELAE   KQL  +EP N+GN+++LSNIY+   
Sbjct: 910  QLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRG 969

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
            RWE+ A+ R  ++   V+K  + SWVE +GK        ++HP   +IY KL++L  EMK
Sbjct: 970  RWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMK 1029

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             +GY+P TE  + DVED  K+  L+HHSEKLA+ F L+   PG  IR+ KNLR+C DCH+
Sbjct: 1030 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHT 1089

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +K  SRI  RE IVRD NRFH F +GSCSC D+W
Sbjct: 1090 AIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 352/576 (61%), Gaps = 10/576 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   +  CA  +    GK  H+ +I  GL  D      L++ Y+KCGL+  ARKVFD M
Sbjct: 264 TLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGM 323

Query: 95  PQRCIVSWNTIIGSYT--TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            +  ++SW  ++  Y     G E+EA+ +F NML +G    + FT S VL ACA+  D  
Sbjct: 324 REHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFD 383

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +Q+H   +K  +     VG  L+ VYAK G +  A + F+ + E+N V+ + +    V
Sbjct: 384 FGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNV 443

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           ++        L R  + +G   + FT +S++   A +  + +G+Q+HA++ K GF +++ 
Sbjct: 444 KDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLS 503

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+ MY+KCG    A  VF+ +E+ NV+ W ++I+GF++H  + + + LF  M + G
Sbjct: 504 VNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETG 563

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN+ TYI+VLSACSH+G++++   +F  M   H ++P + HY+CM+D+LGR+GL+ EA
Sbjct: 564 VKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEA 623

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            + I +MPFDA A +W + L SCR +RN +L E AAK +   EP +   ++LLSN+YA  
Sbjct: 624 IEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATE 683

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            RWE+VA  RK ++  ++ KE   SW+E++        G   HP+  +IY KL++L  ++
Sbjct: 684 GRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKI 743

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K +GY P T+  LHDVED +K++ L  HSEKLA+ F L+      PIR+ KNLR+CGDCH
Sbjct: 744 KNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCH 803

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + +K+ S ++GRE +VRD NRFHH  +G+CSC D+W
Sbjct: 804 TAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 185/364 (50%), Gaps = 13/364 (3%)

Query: 13  YKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
           +K+ ++  +    +  N  +L T    L+ C R +    GK+ H K+    L  DTL  N
Sbjct: 33  HKAITTLNLTDTESTHN-NKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLN 91

Query: 73  ILINFYSKCGLISGARKVFDEM--PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
            LI  YSK      A  +F  M   +R +VS+++II  +  N    +AV +F  +L +  
Sbjct: 92  SLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDG 151

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQ-LHVFALKAA-MDRNVFVGTALLDVYAK-CGL-- 185
              +E+  ++V+ AC  K   F+    L  F LK    D +V VG  L+D++ K C L  
Sbjct: 152 VYPNEYCFTAVIRAC-LKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLAD 210

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVIC 244
           +  A +VF+ M E+N VTW+ M+    Q    +EA+ LF    V  G   ++FT++ +I 
Sbjct: 211 LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS 270

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            CA +  L  GK++H+ + ++G   ++    SLVDMYAKCG V +A  VF G+ E NV+ 
Sbjct: 271 VCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMS 330

Query: 305 WNTMISGFSRHARSV--EVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           W  +++G+ R       E M +F  M  Q G+ PN  T+  VL AC+ +   + G+    
Sbjct: 331 WTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHG 390

Query: 362 LMVK 365
             +K
Sbjct: 391 QTIK 394



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 164/302 (54%), Gaps = 14/302 (4%)

Query: 74  LINFYSK-CGL--ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
           LI+ + K C L  +  ARKVFD+M ++ +V+W  +I      G   EA+ LF+ ML    
Sbjct: 198 LIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSG 257

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
                FT++ ++  CA  + +   K+LH + +++ +  ++ VG +L+D+YAKCGL+ +A 
Sbjct: 258 YVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEAR 317

Query: 191 RVFESMPERNEVTWSSMVAGFVQ-NELYE-EALILFRRAQVL-GLEYNQFTISSVICACA 247
           +VF+ M E N ++W+++V G+V+    YE EA+ +F    +  G+  N FT S V+ ACA
Sbjct: 318 KVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV----V 303
            L     G+QVH    K G  +     + LV +YAK G +  A   F  + EKN+    V
Sbjct: 378 SLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETV 437

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           + +T +  F+ ++       L  +++  G   +  TY S+LS  + IG + KG+    ++
Sbjct: 438 VDDTNVKDFNLNSEQ----DLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMV 493

Query: 364 VK 365
           VK
Sbjct: 494 VK 495



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 9/264 (3%)

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T S +L  C   ++    K LH     + +  +  +  +L+ +Y+K      A  +F+SM
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 197 --PERNEVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALI 253
              +R+ V++SS+++ F  N    +A+ +F +  +  G+  N++  ++VI AC       
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 254 QGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVD---AYFVFSGIEEKNVVLWNTMI 309
            G  +   + KTG F S++     L+DM+ K   + D   A  VF  + EKNVV W  MI
Sbjct: 174 TGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMI 233

Query: 310 SGFSRHARSVEVMILF-EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           +  +++  + E + LF E +  +G  P+  T   ++S C+ I  +  GK     +++   
Sbjct: 234 TRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGL 293

Query: 369 VLPNVFHYSCMIDILGRAGLIHEA 392
           VL      S ++D+  + GL+ EA
Sbjct: 294 VLDLCVGCS-LVDMYAKCGLVQEA 316


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/575 (39%), Positives = 344/575 (59%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T    L+S +R   P+R G+  HA+ + +  + +      L+  Y++CGL+  A++VFDE
Sbjct: 119 TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 178

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP    VSW  +I +Y   G  +EAV +  N    G  P S FT   VL ACA   D+  
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS-FTAVRVLTACARVADLAT 237

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +   A +  + ++VFV TA +D+Y KCG ++ A  VF+ M +++ V W +MV G+  
Sbjct: 238 GETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYAS 297

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    EAL LF   Q  G+  + + ++  + AC  L AL  G+Q   ++    F  N   
Sbjct: 298 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 357

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYAKCG   +A+ VF  + +K++++WN MI G            L  +M+++G+
Sbjct: 358 GTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGV 417

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             N+ T+I +L +C+H G+++ G+ YF  M K +++ P + HY C++D+L RAGL+ EA+
Sbjct: 418 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAH 477

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI +MP  A A + G+LL  C+ +RN ELAE    QL  +EP N+GN+++LSNIY+   
Sbjct: 478 QLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRG 537

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RWE+ A+ R  +++  V+K  + SWVE +GK        ++HP   +IY KL++L  EMK
Sbjct: 538 RWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMK 597

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY+P TE  + DVED  K+  L+HHSEKLA+ F L+   PG  IR+ KNLR+C DCH+
Sbjct: 598 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHT 657

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  SRI  RE IVRD NRFH F +GSCSC D+W
Sbjct: 658 AIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 12/268 (4%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           +A AN    +  T    L +CAR      G+         G+      +   ++ Y KCG
Sbjct: 209 NAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCG 268

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            ++ AR+VFD+M  +  V+W  ++G Y +NG  +EA+ LF+ M  EG  P   + V+  L
Sbjct: 269 EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDC-YAVAGAL 327

Query: 143 CACAAKRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
            AC     +   +Q + +      +D N  +GTAL+D+YAKCG  ++A  VF+ M +++ 
Sbjct: 328 SACTRLGALDLGRQAIRMVDWDEFLD-NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDI 386

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           + W++M+ G       + A  L  + +  G++ N  T   ++C+C     +  G++    
Sbjct: 387 IVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHN 446

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           + K      ++  S  ++ Y   GC+VD
Sbjct: 447 MTK------LYHISPRIEHY---GCIVD 465


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/629 (38%), Positives = 360/629 (57%), Gaps = 60/629 (9%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +++ ++   L +C   +A  + K  H   I  G   D    N LI+ Y+KCGL+  A KV
Sbjct: 270 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKV 329

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE---------------------- 128
           F+ M  + +VSWN ++  Y+ +G  + A  LF NM +E                      
Sbjct: 330 FNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCS 389

Query: 129 -------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM--------- 166
                        G  P +  T+ SVL ACA+     +  ++H ++LK  +         
Sbjct: 390 HEALNLFRQMIFSGSLP-NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGG 448

Query: 167 -DRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALIL 223
            D ++ V  AL+D+Y+KC     A  +F+ +P  ERN VTW+ M+ G  Q     +AL L
Sbjct: 449 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 508

Query: 224 FRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLVD 279
           F    ++  G+  N +TIS ++ ACA LAA+  GKQ+HA + +      S  F A+ L+D
Sbjct: 509 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLID 568

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KCG V  A  VF  + +K+ + W +M++G+  H R  E + +F+KM++AG  P++ T
Sbjct: 569 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 628

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++ VL ACSH GMV++G SYFD M   + + P   HY+C ID+L R+G + +A+  + +M
Sbjct: 629 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 688

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA +W +LL++CR + N+ELAE A  +L  M  +N G++ L+SNIYA   RW++VA
Sbjct: 689 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 748

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R R L++ S +KK    SWV+ +        G R+HP   +IY+ LE L++ +K +GY P
Sbjct: 749 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 808

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           ET   LHDV++  K  LL+ HSEKLAL +GL+   PG PIRI KNLR+CGDCHS   + S
Sbjct: 809 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 868

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I   E +VRD +RFHHF NGSCSC  +W
Sbjct: 869 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 211/436 (48%), Gaps = 59/436 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C    +   G   H  I   G  ++    N L+  YS+CG +  A  +FDE+
Sbjct: 164 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 223

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSE----FTVSSVLCACA 146
            QR I   +SWN+I+ ++  +     A+ LF  M L   + P +E     ++ ++L AC 
Sbjct: 224 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 283

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + V + K++H  A++     +VFVG AL+D YAKCGL+ +A +VF  M  ++ V+W++
Sbjct: 284 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 343

Query: 207 MVAGFVQNELYE-----------------------------------EALILFRRAQVLG 231
           MVAG+ Q+  +E                                   EAL LFR+    G
Sbjct: 344 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 403

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT----------GFGSNMFAASSLVDMY 281
              N  TI SV+ ACA L A  QG ++HA   K           G   ++   ++L+DMY
Sbjct: 404 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 463

Query: 282 AKCGCVVDAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNE 337
           +KC     A  +F  I  EE+NVV W  MI G +++  S + + LF +M  +  G+ PN 
Sbjct: 464 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 523

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLI 396
            T   +L AC+H+  +  GK     +++ H    +  F  +C+ID+  + G +  A  + 
Sbjct: 524 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 583

Query: 397 LNMPFDATASMWGSLL 412
            +M    +A  W S++
Sbjct: 584 DSMS-QKSAISWTSMM 598



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 151/323 (46%), Gaps = 45/323 (13%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y  CG    A  V + +     V WN +I  +   GR   A+ +   MLR G  P   FT
Sbjct: 106 YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP-DHFT 164

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +  VL AC            H        + NVF+  AL+ +Y++CG + +AS +F+ + 
Sbjct: 165 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 224

Query: 198 ER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE------YNQFTISSVICACAG 248
           +R   + ++W+S+V+  V++     AL LF +  ++  E       +  +I +++ AC  
Sbjct: 225 QRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGS 284

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L A+ Q K+VH    + G   ++F  ++L+D YAKCG + +A  VF+ +E K+VV WN M
Sbjct: 285 LKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 344

Query: 309 ISGFSRHAR-----------------------------------SVEVMILFEKMQQAGL 333
           ++G+S+                                      S E + LF +M  +G 
Sbjct: 345 VAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGS 404

Query: 334 HPNEQTYISVLSACSHIGMVEKG 356
            PN  T ISVLSAC+ +G   +G
Sbjct: 405 LPNCVTIISVLSACASLGAFSQG 427



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 129/271 (47%), Gaps = 17/271 (6%)

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +GT ++  Y  CG    A  V E +     V W+ ++   ++    + A+ +  R    G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              + FT+  V+ AC  L +   G   H ++C  GF SN+F  ++LV MY++CG + +A 
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217

Query: 292 FVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH---PNEQ----TYI 341
            +F  I ++   +V+ WN+++S   + + +   + LF KM    +H    NE+    + +
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI-VHEKPTNERSDIISIV 276

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++L AC  +  V + K      ++ +   P+VF  + +ID   + GL+  A  +   M F
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIR-NGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 335

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLF 432
               S W +++A      N E    AA +LF
Sbjct: 336 KDVVS-WNAMVAGYSQSGNFE----AAFELF 361


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 353/578 (61%), Gaps = 13/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           TL   + +CA     + G+  H++ I  GL  D      LIN Y+KC   G +  ARK+F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 92  DEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           D++    + SW  +I  Y    G ++EA+ LF  M+     P + FT SS L ACA    
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIP-NHFTFSSTLKACANLAA 391

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   +Q+   A+K        V  +L+ +YA+ G I DA + F+ + E+N +++++++  
Sbjct: 392 LRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N   EEAL LF   +  G+  + FT +S++   A +  + +G+Q+HA + K+G   N
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLN 511

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+ MY++CG +  A+ VF  +E++NV+ W ++I+GF++H  + + + LF KM +
Sbjct: 512 QSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE 571

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ PN  TYI+VLSACSH+G+V +G  +F  M  +H V+P + HY+CM+DILGR+G + 
Sbjct: 572 EGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLS 631

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA   I +MP+ A A +W + L +CR + NLEL + AAK +   EP +   ++LLSN+YA
Sbjct: 632 EAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYA 691

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           +  +W+EV+  RK +++  + KE   SWVE++        G  +HP+ AEIY +L+ L  
Sbjct: 692 STSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSV 751

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++KKLGY P  +  LHDVE+ +K++LL  HSEK+A+ FGL+      PIR+ KNLRICGD
Sbjct: 752 KIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGD 811

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CHS +K+ S   GRE IVRD NRFHH  +G CSC ++W
Sbjct: 812 CHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 184/368 (50%), Gaps = 9/368 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T    L+ C R R+   G + H K+    L  D++T N LI+ YSKCG    A  +F
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 92  DEM-PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
             M   R ++SW+ ++  +  N     A+  F++M+  G  P +E+  ++   AC+    
Sbjct: 125 QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP-NEYCFAAATRACSTAEF 183

Query: 151 VFECKQLHVFALKAA-MDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMV 208
           V     +  F +K   +  +V VG  L+D++ K  G +  A +VFE MPERN VTW+ M+
Sbjct: 184 VSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
              +Q     EA+ LF    + G E ++FT+S VI ACA +  L+ G+Q+H+   + G  
Sbjct: 244 TRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLT 303

Query: 269 SNMFAASSLVDMYAKC---GCVVDAYFVFSGIEEKNVVLWNTMISGF-SRHARSVEVMIL 324
            +      L++MYAKC   G +  A  +F  I + NV  W  MI+G+  +     E + L
Sbjct: 304 LDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDL 363

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M    + PN  T+ S L AC+++  +  G+  F   VK      N    S +I +  
Sbjct: 364 FRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS-LISMYA 422

Query: 385 RAGLIHEA 392
           R+G I +A
Sbjct: 423 RSGRIDDA 430


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/575 (39%), Positives = 344/575 (59%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T    L+S +R   P+R G+  HA+ + +  + +      L+  Y++CGL+  A++VFDE
Sbjct: 72  TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 131

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP    VSW  +I +Y   G  +EAV +  N    G  P S FT   VL ACA   D+  
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS-FTAVRVLTACARVADLAT 190

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +   A +  + ++VFV TA +D+Y KCG ++ A  VF+ M +++ V W +MV G+  
Sbjct: 191 GETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYAS 250

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    EAL LF   Q  G+  + + ++  + AC  L AL  G+Q   ++    F  N   
Sbjct: 251 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVL 310

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYAKCG   +A+ VF  + +K++++WN MI G            L  +M+++G+
Sbjct: 311 GTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGV 370

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             N+ T+I +L +C+H G+++ G+ YF  M K +++ P + HY C++D+L RAGL+ EA+
Sbjct: 371 KLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAH 430

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI +MP  A A + G+LL  C+ +RN ELAE    QL  +EP N+GN+++LSNIY+   
Sbjct: 431 QLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRG 490

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RWE+ A+ R  +++  V+K  + SWVE +GK        ++HP   +IY KL++L  EMK
Sbjct: 491 RWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMK 550

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY+P TE  + DVED  K+  L+HHSEKLA+ F L+   PG  IR+ KNLR+C DCH+
Sbjct: 551 TMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHT 610

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  SRI  RE IVRD NRFH F +GSCSC D+W
Sbjct: 611 AIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 12/268 (4%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           +A AN    +  T    L +CAR      G+         G+      +   ++ Y KCG
Sbjct: 162 NAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCG 221

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            ++ AR+VFD+M  +  V+W  ++G Y +NG  +EA+ LF+ M  EG  P   + V+  L
Sbjct: 222 EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDC-YAVAGAL 280

Query: 143 CACAAKRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
            AC     +   +Q + +      +D N  +GTAL+D+YAKCG  ++A  VF+ M +++ 
Sbjct: 281 SACTRLGALDLGRQAIRMVDWDEFLD-NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDI 339

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           + W++M+ G       + A  L  + +  G++ N  T   ++C+C     +  G++    
Sbjct: 340 IVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHN 399

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           + K      ++  S  ++ Y   GC+VD
Sbjct: 400 MTK------LYHISPRIEHY---GCIVD 418


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/571 (40%), Positives = 358/571 (62%), Gaps = 15/571 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM-PQRC 98
           L+ C+++R     K  H  ++  G          L+  YSKC  +  A K+F        
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +V+W  +IG +  N   ++AV LF  M REG  P + FT S+VL    A +      QLH
Sbjct: 373 VVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRP-NHFTYSTVL----AGKPSSLLSQLH 427

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +KA  ++   V TALLD Y K G + +++RVF S+P ++ V WS+M+ G  Q    E
Sbjct: 428 AQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSE 487

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNMFAASSL 277
           +A+ +F +    G++ N++T SSVI AC+  AA ++ GKQ+HA   K+G  + +  +S+L
Sbjct: 488 KAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSAL 547

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY+K G +  A  VF+  EE+++V WN+MI+G+ +H  + + + +F+ MQ  GL  ++
Sbjct: 548 LTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDD 607

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+I VL+AC+H G+VE+G+ YF++M+K +++   + HYSCM+D+  RAG+  +A D+I 
Sbjct: 608 VTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIIN 667

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            MPF A+ ++W +LLA+CR +RNLEL ++AA++L  ++P++A  ++LLSNI+A    WEE
Sbjct: 668 GMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEE 727

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
            A  RKL+ + +VKKE   SW+EIK        G  +HP    +Y+KLE+L  ++K +GY
Sbjct: 728 KAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGY 787

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
           +P+T +  HDVE+  K+ +L  HSE+LA+ +GL+ L PG PI+I KNLRICGDCH+ ++ 
Sbjct: 788 QPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIEL 847

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S I  R  IVRD NRFHHF  G CSC  +W
Sbjct: 848 ISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 206/446 (46%), Gaps = 14/446 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+ C      V G+  H + +  G   D      L++ Y K       R +FDEM
Sbjct: 106 TLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEM 165

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW +++  Y  NG   E + L   M  EG  P + FT ++VL A A +  +   
Sbjct: 166 GIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNP-NGFTFATVLGALADESIIEGG 224

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H   +K   +   FV  AL+ +Y K  ++ DA  VF+SM  R+ VTW+ M+ G+   
Sbjct: 225 VQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAI 284

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             Y E   +F R ++ G++ ++    + +  C+    L   KQ+H  + K G+       
Sbjct: 285 GFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           ++L+  Y+KC  V +A+ +FS  +   NVV W  MI GF ++  + + + LF +M + G+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGV 404

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  TY +VL+      +    + +  ++   +  +P+V   + ++D   + G + E+ 
Sbjct: 405 RPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSV--ATALLDAYVKTGNVVESA 459

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAA 451
            +  ++P     + W ++L      R+ E A     QL   G++P    N    S++  A
Sbjct: 460 RVFYSIPAKDIVA-WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKP----NEYTFSSVINA 514

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKS 477
                      K I  + VK  KS +
Sbjct: 515 CSSSAATVEHGKQIHATAVKSGKSNA 540



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 149/284 (52%), Gaps = 12/284 (4%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A ++FDE P + I  +N ++  ++ N  ++EA+ LF ++   G       T+S  L  C 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSG-LGVDGLTLSCALKVCG 115

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              D    +Q+H  +LK+    +V VGT+L+D+Y K     D   +F+ M  +N V+W+S
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           +++G+ +N L +E + L  + Q+ G+  N FT ++V+ A A  + +  G QVHA++ K G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           F    F  ++L+ MY K   V DA  VF  +  ++ V WN MI G++     +E   +F 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 327 KMQQAGLHPNEQTYISVLSACS-----------HIGMVEKGKSY 359
           +M+ AG+  +   + + L  CS           H G+V+ G  +
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 96/177 (54%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A ++F+  P ++   ++ ++  F +N    EAL LF+     GL  +  T+S  +  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L   + G+QVH    K+GF  ++   +SLVDMY K     D   +F  +  KNVV W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +SG++R+  + EV+ L  +MQ  G++PN  T+ +VL A +   ++E G     ++VK
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVK 233


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/608 (39%), Positives = 349/608 (57%), Gaps = 44/608 (7%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  ++CA  R  +  K  H   I  G  +D L  N LI+ Y KC    GAR VF+ MP
Sbjct: 81  LLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMP 140

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            R ++SW ++   Y   G  +EA+  F  M   G+ P S  TVSS+L AC   +D+   +
Sbjct: 141 FRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNS-VTVSSILPACTDLKDLKSGR 199

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS---------- 205
           ++H F ++  M  NVFV +AL+++YA C  I  A  VF+SM  R+ V+W+          
Sbjct: 200 EVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNK 259

Query: 206 -------------------------SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
                                    +++ G +QN   E+AL +  R Q  G + NQ TI+
Sbjct: 260 ECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITIT 319

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           SV+ AC  L +L  GKQ+H  + +  F  ++   ++LV MYAKCG +  +  VFS + ++
Sbjct: 320 SVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKR 379

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           + V WNTMI   S H    E ++LF +M  +G+ PN  T+  VLS CSH  +V++G   F
Sbjct: 380 DTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIF 439

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
           D M + H+V P+  H+SCM+D+L RAG + EAY+ I  MP + TA  WG+LL  CR Y+N
Sbjct: 440 DSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKN 499

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           +EL  IAA +LF +E DN GN++LLSNI  + + W E +  RKL+RD  V K    SW++
Sbjct: 500 VELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQ 559

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           ++        G +++ +  EIY  L+ + E+M+  GY P T+  L DV+   K+E+L +H
Sbjct: 560 VRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNH 619

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ FG++ L     IR+ KNLRICGDCH+ +KF ++I G + IVRD  RFHHF +G
Sbjct: 620 SEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDG 679

Query: 593 SCSCWDFW 600
            CSC DFW
Sbjct: 680 LCSCQDFW 687



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 224/478 (46%), Gaps = 52/478 (10%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
            I  YS  G +  AR +FD++PQ  + +W  +I + T +GR  EA+  + +   +     
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
            +  + SV  ACA+ RDV   K++H  A++     +V +G AL+D+Y KC     A  VF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           E MP R+ ++W+SM + +V   L  EAL  FR+  + G   N  T+SS++ AC  L  L 
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS--- 310
            G++VH  + + G G N+F +S+LV+MYA C  +  A  VF  +  ++ V WN +I+   
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 311 --------------------------------GFSRHARSVEVMILFEKMQQAGLHPNEQ 338
                                           G  ++ R+ + + +  +MQ +G  PN+ 
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  SVL AC+++  +  GK     + + H    ++   + ++ +  + G +  +  +   
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFR-HWFFQDLTTTTALVFMYAKCGDLELSRRVFSM 375

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAANRRWE 456
           M    T S W +++ +   + N E A +  +++   G+ P++     +LS    +    E
Sbjct: 376 MTKRDTVS-WNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDE 434

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYS---KLEKLVEEMKKLGYKP 511
            +     + RD  V+ +            +H  + ++ S   +LE+  E +KK+  +P
Sbjct: 435 GLLIFDSMSRDHSVEPDAD----------HHSCMVDVLSRAGRLEEAYEFIKKMPIEP 482



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 38/314 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +C   +    G+  H  ++  G+  +   S+ L+N Y+ C  I  A+ VFD M
Sbjct: 181 TVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSM 240

Query: 95  PQRCIVSWNTIIGSY-----------------------------------TTNGREQEAV 119
            +R  VSWN +I +Y                                     NGR ++A+
Sbjct: 241 SRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKAL 300

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            +   M   G  P ++ T++SVL AC     +   KQ+H +  +    +++   TAL+ +
Sbjct: 301 EVLSRMQNSGFKP-NQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFM 359

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YAKCG +  + RVF  M +R+ V+W++M+     +   EEAL+LFR     G+  N  T 
Sbjct: 360 YAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTF 419

Query: 240 SSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGI 297
           + V+  C+    + +G  +   + +      +    S +VD+ ++ G + +AY F+    
Sbjct: 420 TGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMP 479

Query: 298 EEKNVVLWNTMISG 311
            E     W  ++ G
Sbjct: 480 IEPTAGAWGALLGG 493


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/572 (40%), Positives = 346/572 (60%), Gaps = 10/572 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + LQSC    +   G+  H +++  GL  DT+ S  L++ Y+ CG +  AR++FD MP+R
Sbjct: 67  SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR 126

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +  WN +I +Y   G  + AV L+  M+  G  P   FT   VL ACAA  D+   +++
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEP-DNFTYPLVLKACAALLDLETGREV 185

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H         ++VFV   ++D+YAKCG + DA  VF+ +  R+ V W+SM+A + QN   
Sbjct: 186 HQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRP 245

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EAL L R     G+     T+ S + A A  AAL +G+++H    + GFG      +SL
Sbjct: 246 MEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSL 305

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPN 336
           VDMYAK G V  A  +F  + ++ +V WN MI G+  H  + E + LF KM+  A + P+
Sbjct: 306 VDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPD 365

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
             T++ VLSAC+H GMVE+ K +F LMV  +++ P V HY+C+ID+LG  G   EAYDLI
Sbjct: 366 NITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLI 425

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
             M  +  + +WG+LL  C+ ++N+EL E+A ++L  +EP++AGN++ LSNIYA + +WE
Sbjct: 426 KGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWE 485

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLG 508
           + AR RKL+ +  +KK  + SW+E+KGK +        HPR  EIY +LE+L   M   G
Sbjct: 486 KAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAG 545

Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
           Y P+     H+V+D  K+ ++  HSE+LA+ FGL+   PG  + + KNLR+C DCH  +K
Sbjct: 546 YVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIK 605

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             S+I  RE I+RD+NR+HHF NG CSC D+W
Sbjct: 606 LISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 144/266 (54%), Gaps = 1/266 (0%)

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R   +P++    +S+L +C A   +   +QLH   L + +  +  + T L+D+YA CG +
Sbjct: 54  RLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQV 113

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A R+F+ MP+RN   W+ ++  + +    E A+ L+R     G+E + FT   V+ AC
Sbjct: 114 GHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKAC 173

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A L  L  G++VH  +  T +G ++F  + +VDMYAKCGCV DA  VF GI  ++ V+WN
Sbjct: 174 AALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWN 233

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           +MI+ + ++ R +E + L   M   G+ P   T +S +SA +    + +G+       ++
Sbjct: 234 SMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRR 293

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEA 392
              L +    S ++D+  ++G +  A
Sbjct: 294 GFGLQDKLKTS-LVDMYAKSGWVQVA 318



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 15/340 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA       G+  H ++ G     D      +++ Y+KCG +  AR VFD +
Sbjct: 165 TYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGI 224

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  V WN++I +Y  NGR  EA+AL  +M   G  P +  T+ S + A A    +   
Sbjct: 225 AVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGP-TIATLVSAVSAAADAAALPRG 283

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           ++LH F  +        + T+L+D+YAK G +  A  +FE + +R  V+W++M+ G+  +
Sbjct: 284 RELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMH 343

Query: 215 ELYEEALILFRR----AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGS 269
              +EAL LF +    AQV     +  T   V+ AC     + + K+   ++        
Sbjct: 344 GHADEALALFNKMKGDAQV---TPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKP 400

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMIL-FEK 327
            +   + ++D+    G   +AY +  G+  E +  +W  +++G   H ++VE+  L  +K
Sbjct: 401 TVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIH-KNVELGELALQK 459

Query: 328 MQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           + +  L P +   Y+ + +  +  G  EK      LM  +
Sbjct: 460 LIE--LEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNR 497


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/574 (39%), Positives = 350/574 (60%), Gaps = 11/574 (1%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
            A L +C  +RA   G+  HA +I       T     L+ FY KC  +  ARKV DEMP+
Sbjct: 55  DALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPE 114

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           + +VSW  +I  Y+  G   EA+++F  M+R    P +EFT ++VL +C     +   KQ
Sbjct: 115 KNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKP-NEFTFATVLTSCIRASGLALGKQ 173

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H   +K   D ++FVG++LLD+YAK G I +A  +FE +PER+ V+ ++++AG+ Q  L
Sbjct: 174 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGL 233

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            EEAL +F+R Q  G+  N  T +S++ A +GLA L  GKQ H  + +          +S
Sbjct: 234 DEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 293

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHP 335
           L+DMY+KCG +  A  +F  + E+  + WN M+ G+S+H    EV+ LF  M+ +  + P
Sbjct: 294 LIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 353

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           +  T ++VLS CSH  M + G S +D MV  ++ + P+  HY C++D+LGRAG I EA++
Sbjct: 354 DAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFE 413

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP   TA + GSLL +CR + ++++ E    +L  +EP+NAGN+++LSN+YA+  R
Sbjct: 414 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGR 473

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WE+V   R ++    V KE  +SW++ +          R HPR  E+ +K++++  +MK+
Sbjct: 474 WEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 533

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L+DV++ +K+++L+ HSEKLALTFGL+    G+PIR+ KNLRIC DCH+F
Sbjct: 534 AGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNF 593

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S++  RE  +RD NRFH    G CSC D+W
Sbjct: 594 AKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 175/325 (53%), Gaps = 9/325 (2%)

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF-TVSSVLCACAA 147
           + F   P   + ++  I     +NGR QEA+   + M+  G  P   F    ++L AC  
Sbjct: 10  RSFSSSPNSVLQTFRPI-SQLCSNGRLQEAL---LEMVMLG--PEIGFHCYDALLNACLD 63

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
           KR + E +++H   +K       ++ T LL  Y KC  + DA +V + MPE+N V+W++M
Sbjct: 64  KRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAM 123

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           ++ + Q     EAL +F        + N+FT ++V+ +C   + L  GKQ+H ++ K  +
Sbjct: 124 ISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNY 183

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            S++F  SSL+DMYAK G + +A  +F  + E++VV    +I+G+++     E + +F++
Sbjct: 184 DSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQR 243

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           +Q  G+ PN  TY S+L+A S + +++ GK     ++++      V   S +ID+  + G
Sbjct: 244 LQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS-LIDMYSKCG 302

Query: 388 LIHEAYDLILNMPFDATASMWGSLL 412
            +  A  L  NMP + TA  W ++L
Sbjct: 303 NLSYAQRLFDNMP-ERTAISWNAML 326



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 132/260 (50%), Gaps = 4/260 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC R      GK  H  I+    ++     + L++ Y+K G I  AR++F+ +
Sbjct: 154 TFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECL 213

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VS   II  Y   G ++EA+ +F  +  EG  P +  T +S+L A +    +   
Sbjct: 214 PERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRP-NYVTYASLLTALSGLALLDHG 272

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ H   L+  +     +  +L+D+Y+KCG +S A R+F++MPER  ++W++M+ G+ ++
Sbjct: 273 KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKH 332

Query: 215 ELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVH--AVLCKTGFGSNM 271
            L  E L LFR  +    ++ +  T+ +V+  C+       G  ++   V  + G   + 
Sbjct: 333 GLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDT 392

Query: 272 FAASSLVDMYAKCGCVVDAY 291
                +VDM  + G + +A+
Sbjct: 393 EHYGCIVDMLGRAGRIDEAF 412


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 354/578 (61%), Gaps = 13/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           TL   + +CA     + G+  H++ I  GL  D      LIN Y+KC   G +  ARK+F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 92  DEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           D++    + SW  +I  Y    G ++EA+ LF  M+     P + FT SS L ACA    
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIP-NHFTFSSTLKACANLAA 391

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   +Q+   A+K        V  +L+ +YA+ G I DA + F+ + E+N +++++++  
Sbjct: 392 LRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDA 451

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N   EEAL LF   +  G+  + FT +S++   A +  + +G+Q+HA + K+G   N
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLN 511

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+ MY++CG +  A+ VF  +E++NV+ W ++I+GF++H  + + + LF KM +
Sbjct: 512 QSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE 571

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ PNE TYI+VLSACSH+G+V +G  +F  M  +H V+P + HY+C++DILGR+G + 
Sbjct: 572 EGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLS 631

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA   I +MP+ A A +W + L +CR + NLEL + AAK +   EP +   ++LLSN+YA
Sbjct: 632 EAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYA 691

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           +  +W+EV+  RK +++  + KE   SWVE++        G  +HP+ AEIY +L+ L  
Sbjct: 692 SISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSV 751

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++KKLGY P  +  LHDVE+ +K++LL  HSEK+A+ FGL+      PIR+ KNLRICGD
Sbjct: 752 KIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGD 811

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CHS +K+ S   GRE IVRD NRFHH  +G CSC ++W
Sbjct: 812 CHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 9/368 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T    L+ C R R+   G + H K+    L  D++T N LI+ YSKCG    A  +F
Sbjct: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124

Query: 92  DEM-PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
             M   R ++SW+ ++  +  N     A+  F++M+  G  P +E+  ++   AC+    
Sbjct: 125 RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP-NEYCFAAATRACSTAEF 183

Query: 151 VFECKQLHVFALKAA-MDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMV 208
           V     +  F +K   +  +V VG  L+D++ K  G +  A +VFE MPERN VTW+ M+
Sbjct: 184 VSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
              +Q     EA+ LF      G E ++FT+S VI ACA +  L+ G+Q+H+   + G  
Sbjct: 244 TRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLT 303

Query: 269 SNMFAASSLVDMYAKC---GCVVDAYFVFSGIEEKNVVLWNTMISGF-SRHARSVEVMIL 324
            +      L++MYAKC   G +  A  +F  I + NV  W  MI+G+  +     E + L
Sbjct: 304 LDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDL 363

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M    + PN  T+ S L AC+++  +  G+  F   VK      N    S +I +  
Sbjct: 364 FRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS-LISMYA 422

Query: 385 RAGLIHEA 392
           R+G I +A
Sbjct: 423 RSGRIDDA 430


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/591 (40%), Positives = 352/591 (59%), Gaps = 29/591 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST   T++SC+       GK  H +    G  +D   ++ LI+ YSKCG ++ ARK+FDE
Sbjct: 87  STFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDE 146

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT----------VSSVLC 143
           +P+R +VSW ++I  Y  N R +EAV LF   L   +T Y E            +  V+ 
Sbjct: 147 IPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVIS 206

Query: 144 ACA--AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           ACA    + V EC  +H  A+K   +  + VG  L+D YAKCG IS + +VF+ M E + 
Sbjct: 207 ACARVCVKSVTEC--VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDV 264

Query: 202 VTWSSMVAGFVQNELYEEALILF----RRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
            +W+S++A + QN L  EA  LF    +R +V    YN  T+S+V+ ACA   AL  GK 
Sbjct: 265 CSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV---RYNAVTLSAVLLACAHSGALQIGKC 321

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           +H  + K     N+   +S+VDMY KCG V  A   F  ++ KNV  W  M++G+  H  
Sbjct: 322 IHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGH 381

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             E M +F +M + G+ PN  T++SVL+ACSH G++++G  +F+ M  + +V P + HYS
Sbjct: 382 GKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYS 441

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
           CM+D+LGRAG + EAY LI  M       +WGSLL +CR ++N+EL EI+A++LF ++P 
Sbjct: 442 CMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPS 501

Query: 438 NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPR 489
           N G ++LLSNIYA   RW++V R R L+++  + K    S VE KG+        + HP+
Sbjct: 502 NCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQ 561

Query: 490 IAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV 549
             +IY  L++L  +++++GY P     L+DV+   K  +L  HSEKLA+ FG+M   PG 
Sbjct: 562 HEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGS 621

Query: 550 PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            I+I+KNLRICGDCH  +K  S+I  RE ++RD  RFHHF +G CSC D+W
Sbjct: 622 VIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 173/311 (55%), Gaps = 17/311 (5%)

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           + SWN+II  +  +G   +A+  F +M +    P +  T    + +C++  D+   KQ+H
Sbjct: 51  VYSWNSIIADFARSGDSLQALYAFSSMRKLSLHP-NRSTFPCTIKSCSSLYDLCAGKQIH 109

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             A       ++FV +AL+D+Y+KCG ++DA ++F+ +PERN V+W+SM++G+VQNE   
Sbjct: 110 QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAR 169

Query: 219 EALILFRRAQVLG-LEYNQFT----------ISSVICACAGLAALIQGKQVHAVLCKTGF 267
           EA+ LF+   ++   +Y++            +  VI ACA +      + VH +  K GF
Sbjct: 170 EAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGF 229

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
              +   ++L+D YAKCG +  +  VF G+EE +V  WN++I+ ++++  SVE   LF  
Sbjct: 230 EGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSD 289

Query: 328 MQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL--- 383
           M + G +  N  T  +VL AC+H G ++ GK   D +VK   +  N+   + ++D+    
Sbjct: 290 MVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKM-ELEDNLVVGTSIVDMYCKC 348

Query: 384 GRAGLIHEAYD 394
           GR  +  +A+D
Sbjct: 349 GRVEMARKAFD 359



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 62/359 (17%)

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+S++A F ++    +AL  F   + L L  N+ T    I +C+ L  L  GKQ+H   
Sbjct: 53  SWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQA 112

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
              G+GS++F AS+L+DMY+KCG + DA  +F  I E+NVV W +MISG+ ++ R+ E +
Sbjct: 113 FVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAV 172

Query: 323 ILFEKMQQAGLHPNEQTYIS---------------VLSACSHI----------------- 350
            LF++     L  +E  Y                 V+SAC+ +                 
Sbjct: 173 FLFKEF----LLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKG 228

Query: 351 --GMVEKGKSYFDLMVK--QHNVLPNVFH---------YSCMIDILGRAGLIHEAYDLIL 397
             G +  G +  D   K  + +V   VF          ++ +I +  + GL  EA+ L  
Sbjct: 229 FEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFS 288

Query: 398 NM----PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           +M         A    ++L +C +   L++ +    Q+  ME ++  N ++ ++I     
Sbjct: 289 DMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELED--NLVVGTSIVDMYC 346

Query: 454 RWEEVARARKLIRDSEVKKEKSKSW-VEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           +   V  ARK      +K++  KSW V + G   H    E      K+  EM + G KP
Sbjct: 347 KCGRVEMARKAF--DRLKRKNVKSWTVMVAGYGMHGHGKEAM----KVFYEMIRCGIKP 399



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 10/121 (8%)

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           +++ +V  WN++I+ F+R   S++ +  F  M++  LHPN  T+   + +CS +  +  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 357 KSYFDLMVKQHNVL----PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           K      + Q   +     ++F  S +ID+  + G +++A  L   +P     S W S++
Sbjct: 106 KQ-----IHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVS-WTSMI 159

Query: 413 A 413
           +
Sbjct: 160 S 160


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/542 (41%), Positives = 343/542 (63%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y++ G +S A+++F+E P R + +W  ++  Y  NG   EA   F  M 
Sbjct: 231 DVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMP 290

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +     +E + +++L      + +    +L     +A   RN+     ++  Y + G I
Sbjct: 291 VK-----NEISYNAMLAGYVQYKKMVIAGEL----FEAMPCRNISSWNTMITGYGQNGGI 341

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           + A ++F+ MP+R+ V+W+++++G+ QN  YEEAL +F   +  G   N+ T S  +  C
Sbjct: 342 AQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTC 401

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  GKQVH  + K GF +  F  ++L+ MY KCG   +A  VF GIEEK+VV WN
Sbjct: 402 ADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWN 461

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    + ++LFE M++AG+ P+E T + VLSACSH G++++G  YF  M + 
Sbjct: 462 TMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRD 521

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           +NV P   HY+CMID+LGRAG + EA +L+ NMPFD  A+ WG+LL + R + N EL E 
Sbjct: 522 YNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEK 581

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
           AA+ +F MEP N+G ++LLSN+YAA+ RW +V + R  +R++ V+K    SWVE++ K +
Sbjct: 582 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIH 641

Query: 487 --------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                   HP    IY+ LE+L  +M++ GY   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 642 TFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAV 701

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FG++ +  G PIR+MKNLR+C DCH+ +K  S+I GR  I+RD +RFHHF+ G CSC D
Sbjct: 702 AFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGD 761

Query: 599 FW 600
           +W
Sbjct: 762 YW 763



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 176/357 (49%), Gaps = 21/357 (5%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K+  +    D ++ N +++ Y++ G +  AR+VF++MP R  +SWN ++ +Y  NGR +E
Sbjct: 129 KLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKE 188

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           A  LF     E ++ +   + + ++     +  + + +QL          R+V     ++
Sbjct: 189 ARRLF-----ESQSNWELISWNCLMGGYVKRNMLGDARQL----FDRMPVRDVISWNTMI 239

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
             YA+ G +S A R+F   P R+  TW++MV+G+VQN + +EA   F    V     N+ 
Sbjct: 240 SGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPV----KNEI 295

Query: 238 TISSVICACAGLAAL-IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           + ++++        + I G+   A+ C+     N+ + ++++  Y + G +  A  +F  
Sbjct: 296 SYNAMLAGYVQYKKMVIAGELFEAMPCR-----NISSWNTMITGYGQNGGIAQARKLFDM 350

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           + +++ V W  +ISG++++    E + +F +M++ G   N  T+   LS C+ I  +E G
Sbjct: 351 MPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           K     +VK        F  + ++ +  + G   EA D+   +      S W +++A
Sbjct: 411 KQVHGQVVKA-GFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVS-WNTMIA 465



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 174/398 (43%), Gaps = 58/398 (14%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D +T N  I+ + + G    A +VF+ MP+R  VS+N +I  Y  N +   A  LF    
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLF---- 100

Query: 127 REGKTPYSE-FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
              K P  + F+ + +L      R + E  +L     K    ++V    A+L  YA+ G 
Sbjct: 101 --DKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK----KDVVSWNAMLSGYAQNGF 154

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR------------------RA 227
           + +A  VF  MP RN ++W+ ++A +V N   +EA  LF                   + 
Sbjct: 155 VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKR 214

Query: 228 QVLGLEYNQF---------TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
            +LG     F         + +++I   A +  L Q K+    L       ++F  +++V
Sbjct: 215 NMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKR----LFNESPIRDVFTWTAMV 270

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP--N 336
             Y + G V +A   F  +  KN + +N M++G+ ++ + V    LFE M      P  N
Sbjct: 271 SGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAM------PCRN 324

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
             ++ ++++     G + + +  FD+M ++  V      ++ +I    + G   EA ++ 
Sbjct: 325 ISSWNTMITGYGQNGGIAQARKLFDMMPQRDCV-----SWAAIISGYAQNGHYEEALNMF 379

Query: 397 LNMPFDATASMWGSL---LASCRNYRNLELAEIAAKQL 431
           + M  D  +S   +    L++C +   LEL +    Q+
Sbjct: 380 VEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQV 417



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 168/366 (45%), Gaps = 44/366 (12%)

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA-CAAKRDVFECKQL 157
           IV+WN  I S+  NG    A+ +F +M R     Y+      +  A  +  RD+F+    
Sbjct: 46  IVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD---- 101

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
                    +R++F    +L  Y +   + +A ++F+ MP+++ V+W++M++G+ QN   
Sbjct: 102 ------KMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           +EA  +F +        N  + + ++ A      L + ++    L ++     + + + L
Sbjct: 156 DEAREVFNKMP----HRNSISWNGLLAAYVHNGRLKEARR----LFESQSNWELISWNCL 207

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +  Y K   + DA  +F  +  ++V+ WNTMISG+++     +   LF +     +    
Sbjct: 208 MGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVF--- 264

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+ +++S     GMV++ + YFD M      + N   Y+ M+     AG +     +I 
Sbjct: 265 -TWTAMVSGYVQNGMVDEARKYFDEM-----PVKNEISYNAML-----AGYVQYKKMVIA 313

Query: 398 NMPFDATA----SMWGSLLASCRNYRNLELAEIAAKQLFGMEP--DNAGNHLLLSNIYAA 451
              F+A      S W +++      +N  +A+  A++LF M P  D      ++S  YA 
Sbjct: 314 GELFEAMPCRNISSWNTMITGYG--QNGGIAQ--ARKLFDMMPQRDCVSWAAIISG-YAQ 368

Query: 452 NRRWEE 457
           N  +EE
Sbjct: 369 NGHYEE 374



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           +  ++  ST    L +CA   A   GK  H +++  G        N L+  Y KCG    
Sbjct: 385 DGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDE 444

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  VF+ + ++ +VSWNT+I  Y  +G  ++A+ LF +M + G  P  E T+  VL AC+
Sbjct: 445 ANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKP-DEITMVGVLSACS 503

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVG------TALLDVYAKCGLISDASRVFESMP-ER 199
               +    +        +MDR+  V       T ++D+  + G + +A  +  +MP + 
Sbjct: 504 HSGLIDRGTEYFY-----SMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDP 558

Query: 200 NEVTWSSMVA 209
              +W +++ 
Sbjct: 559 GAASWGALLG 568



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 144/327 (44%), Gaps = 49/327 (14%)

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           D ++      +  + + G    A RVF SMP R+ V++++M++G+++N  +  A  LF +
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
                 E + F+ + ++        L +  ++  ++ K     ++ + ++++  YA+ G 
Sbjct: 103 MP----ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK----KDVVSWNAMLSGYAQNGF 154

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK----------------MQQ 330
           V +A  VF+ +  +N + WN +++ +  + R  E   LFE                 +++
Sbjct: 155 VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKR 214

Query: 331 AGLHPNEQ-----------TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
             L    Q           ++ +++S  + +G + + K  F+      + + +VF ++ M
Sbjct: 215 NMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN-----ESPIRDVFTWTAM 269

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP-DN 438
           +    + G++ EA      MP     S + ++LA    Y+ +    + A +LF   P  N
Sbjct: 270 VSGYVQNGMVDEARKYFDEMPVKNEIS-YNAMLAGYVQYKKM----VIAGELFEAMPCRN 324

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLI 465
             +   +   Y  N     +A+ARKL 
Sbjct: 325 ISSWNTMITGYGQN---GGIAQARKLF 348


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 350/567 (61%), Gaps = 9/567 (1%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
           +CA+  A  + ++    I       D +    +I+ Y+KCG +  AR++FD M ++ ++S
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           W+ +I +Y  +G+ ++A+ LF  ML  G  P  + T++S+L AC+  +++   + +H   
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLP-DKITLASLLYACSDLKNLQMGRLIHHIV 258

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
            K  +D + FV  AL+D+Y KC  I DA  +F+ MPER+ VTW+ M+ G+ +     E+L
Sbjct: 259 YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESL 318

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
           +LF + +  G+  ++  + +V+ ACA L A+ + + +   + +  F  ++   ++++DM+
Sbjct: 319 VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMH 378

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           AKCGCV  A  +F  +EEKNV+ W+ MI+ +  H +  + + LF  M ++G+ PN+ T +
Sbjct: 379 AKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLV 438

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           S+L ACSH G+VE+G  +F LM + ++V  +V HY+C++D+LGRAG + EA  LI +M  
Sbjct: 439 SLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTV 498

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461
           +    +WG+ L +CR ++++ LAE AA  L  ++P N G+++LLSNIYA   RWE+VA+ 
Sbjct: 499 EKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKT 558

Query: 462 RKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513
           R L+    +KK    +W+E+         G   HPR  EIY  L+ L  +++ +GY P+T
Sbjct: 559 RDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDT 618

Query: 514 EHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRI 573
              LHDV++  K  +L  HSEKLA+ FGL+      PIRI+KNLR+CGDCH+F K  S I
Sbjct: 619 NFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAI 678

Query: 574 AGRETIVRDLNRFHHFTNGSCSCWDFW 600
            GR  IVRD NRFHHF  G+CSC D+W
Sbjct: 679 TGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 212/380 (55%), Gaps = 3/380 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   +++C   +    G++ H  +   GL+ D      L++ Y KC  I  AR +FD+M
Sbjct: 32  TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM 91

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +V+W  +IG Y   G+  E++ LF  M  EG  P  +  + +V+ ACA    + + 
Sbjct: 92  QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP-DKVAMVTVVFACAKLGAMHKA 150

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +  +     +V +GTA++D+YAKCG +  A  +F+ M E+N ++WS+M+A +  +
Sbjct: 151 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 210

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               +AL LFR     G+  ++ T++S++ AC+ L  L  G+ +H ++ K G   + F  
Sbjct: 211 GQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVC 270

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMY KC  + DA F+F  + E+++V W  MI G++    + E ++LF+KM++ G+ 
Sbjct: 271 AALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 330

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++   ++V+ AC+ +G + K ++  D + ++   L +V   + MID+  + G +  A +
Sbjct: 331 PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL-DVILGTAMIDMHAKCGCVESARE 389

Query: 395 LILNMPFDATASMWGSLLAS 414
           +   M      S W +++A+
Sbjct: 390 IFDRMEEKNVIS-WSAMIAA 408



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 161/298 (54%), Gaps = 6/298 (2%)

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
           ++G +   G        F  ++R G  P   +T+  V+ AC   +++   + +H    K 
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARP-DNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 59

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
            +D + FV  AL+D+Y KC  I DA  +F+ M ER+ VTW+ M+ G+ +     E+L+LF
Sbjct: 60  GLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
            + +  G+  ++  + +V+ ACA L A+ + + +   + +  F  ++   ++++DMYAKC
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           GCV  A  +F  +EEKNV+ W+ MI+ +  H +  + + LF  M  +G+ P++ T  S+L
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC--MIDILGRAGLIHEAYDLILNMP 400
            ACS +  ++ G+    ++ K      ++ H+ C  ++D+ G+   I +A  L   MP
Sbjct: 240 YACSDLKNLQMGRLIHHIVYK---FGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP 294


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/543 (41%), Positives = 331/543 (60%), Gaps = 19/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y++ G +S AR++FDE P R + +W  ++  Y  NG   EA   F  M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 127 REGKTPYSEFTVSSVLCA-CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
            + +  Y+      V        R++FE              RN+     ++  Y + G 
Sbjct: 294 EKNEVSYNAMIAGYVQTKKMDIARELFESMPC----------RNISSWNTMITGYGQIGD 343

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I+ A + F+ MP+R+ V+W++++AG+ Q+  YEEAL +F   +  G   N+ T    +  
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALST 403

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA +AAL  GKQ+H    K G+G+  F  ++L+ MY KCG + +A   F GIEEK+VV W
Sbjct: 404 CADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSW 463

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NTM++G++RH    + + +FE M+ AG+ P+E T + VLSACSH G++++G  YF  M K
Sbjct: 464 NTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK 523

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + V+P   HY+CMID+LGRAG + EA DLI NMPF   A+ WG+LL + R + N EL E
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--- 482
            AA+ +F MEP N+G ++LLSN+YAA+ RW +  + R  +RD  V+K    SWVE++   
Sbjct: 584 KAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKI 643

Query: 483 -----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                G  +HP    IY+ LE+L  +M++ GY   T+  LHDVE+  K+ +L +HSEKLA
Sbjct: 644 HTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLA 703

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FG++ +  G PIR+MKNLR+C DCHS +K  S+I GR  I+RD +RFHHF  G CSC 
Sbjct: 704 VAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCG 763

Query: 598 DFW 600
           D+W
Sbjct: 764 DYW 766



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 173/394 (43%), Gaps = 50/394 (12%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D L  N  I+ + + G    A  VF+ MP+R  VS+N +I  Y  N +   A  LF  M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 127 REGKTPYSEFTVSSVL-CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
                 ++      V  C     R +F+             +++V    +LL  YA+ G 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMP----------EKDVVSWNSLLSGYAQNGY 157

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR------------------RA 227
           + +A  VF++MPE+N ++W+ ++A +V N   EEA +LF                   R 
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK 217

Query: 228 QVLGLE---YNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDMYA 282
           + LG     +++  +   I     ++   QG  +     L       ++F  +++V  Y 
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYV 277

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           + G + +A   F  + EKN V +N MI+G+ +  +      LFE M       N  ++ +
Sbjct: 278 QNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR----NISSWNT 333

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           +++    IG + + + +FD+M ++  V      ++ +I    ++G   EA ++ + +  D
Sbjct: 334 MITGYGQIGDIAQARKFFDMMPQRDCV-----SWAAIIAGYAQSGHYEEALNMFVEIKQD 388

Query: 403 ATA---SMWGSLLASCRNYRNLELAEIAAKQLFG 433
             +   + +G  L++C +   LEL     KQ+ G
Sbjct: 389 GESLNRATFGCALSTCADIAALEL----GKQIHG 418



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    L +CA   A   GK  H + + MG        N L+  Y KCG I  A   F+ 
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +VSWNT++  Y  +G  ++A+ +F +M   G  P  E T+  VL AC +   + +
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP-DEITMVGVLSAC-SHTGLLD 512

Query: 154 CKQLHVFALKAAMDRNVFVG----TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
               + +++    D  V       T ++D+  + G + +A  +  +MP +    +W +++
Sbjct: 513 RGTEYFYSMTK--DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL 570

Query: 209 A 209
            
Sbjct: 571 G 571


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/553 (40%), Positives = 341/553 (61%), Gaps = 10/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA  I  GL      +  +++ Y KCG I  AR VFD MP +  VSWN +I  Y  NG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ALF  M+ EG    ++ +V + L AC     + E  ++H   ++  +D NV V  A
Sbjct: 244 REALALFNRMVEEG-VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNA 302

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +Y+KC  +  AS VF+ +  R +V+W++M+ G  QN   E+A+ LF R Q+  ++ +
Sbjct: 303 LITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPD 362

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            FT+ SVI A A ++  +Q + +H    +     +++  ++L+DMYAKCG V  A  +F+
Sbjct: 363 SFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFN 422

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
              E++V+ WN MI G+  H      + LFE+M+  G+ PNE T++SVLSACSH G+V++
Sbjct: 423 SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDE 482

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+ YF  M + + + P + HY  M+D+LGRAG + EA+  I  MP D   S++G++L +C
Sbjct: 483 GREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGAC 542

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           + ++N+ELAE +A+++F + P     H+LL+NIYA    W++VAR R  +  + ++K   
Sbjct: 543 KLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPG 602

Query: 476 KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S +++K        G  NH +  EIYS+L KL+EE+K +GY P+T+  +HDVED  K +
Sbjct: 603 WSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVEDDVKAQ 661

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           LL  HSEKLA+ FGL+   PG  I+I KNLR+C DCH+  K  S + GRE I+RD+ RFH
Sbjct: 662 LLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFH 721

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 722 HFKDGKCSCGDYW 734



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 214/393 (54%), Gaps = 5/393 (1%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           +A +SA A    L T  + L+ CA       G+  HA++   G++++ L +  L N Y+K
Sbjct: 48  VAMSSAGAPPV-LRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE-GKTPYSEFTVS 139
           C   + AR+VFD MP R  V+WN ++  Y  NG  + A+ + + M  E G+ P S  T+ 
Sbjct: 107 CRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS-ITLV 165

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           SVL ACA  R +  C++ H FA+++ ++  V V TA+LD Y KCG I  A  VF+ MP +
Sbjct: 166 SVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N V+W++M+ G+ QN    EAL LF R    G++    ++ + + AC  L  L +G +VH
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVH 285

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            +L + G  SN+   ++L+ MY+KC  V  A  VF  ++ +  V WN MI G +++  S 
Sbjct: 286 ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSE 345

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           + + LF +MQ   + P+  T +SV+ A + I    + +      ++ H +  +V+  + +
Sbjct: 346 DAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH-LDQDVYVLTAL 404

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           ID+  + G ++ A  ++ N   +     W +++
Sbjct: 405 IDMYAKCGRVNIAR-ILFNSARERHVITWNAMI 436


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 347/575 (60%), Gaps = 13/575 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C+   A   G+  H  I+  G  ++    + L++ Y+KCG +  A+ + + M
Sbjct: 267 TFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETM 326

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT-PYSEFTVSSVLCACAAKRDVFE 153
               +VSWN+++  +  +G E+EA+ LF NM   G+     ++T  SVL  C        
Sbjct: 327 EDDDVVSWNSLMVGFVRHGLEEEALRLFKNM--HGRNMKIDDYTFPSVLNCCVVGS--IN 382

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H   +K   +    V  AL+D+YAK G +  A  VFE M E++ ++W+S+V G+ Q
Sbjct: 383 PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQ 442

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N  +EE+L +F   +V G+  +QF ++S++ ACA L  L  GKQVH    K+G   +   
Sbjct: 443 NNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSV 502

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +SLV MYAKCGC+ DA  +F  ++ K+V+ W  +I G++++ +    +  ++ M  +G 
Sbjct: 503 YNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGT 562

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+I +L ACSH G+V++G+ YF  M K + + P   HY+CMID+ GR+G + EA 
Sbjct: 563 RPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAK 622

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            L+  M     A++W SLL++CR + NLELAE AA  LF +EP NA  +++LSN+Y+A+R
Sbjct: 623 QLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASR 682

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           +W +VA+ RKL++   + KE   SW+EI  +        R HPR AEIY+K+++++  +K
Sbjct: 683 KWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIK 742

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY P+    LHD++   K+  L +HSEKLA+ FGL+   P  PIRI KNLR+CGDCHS
Sbjct: 743 EAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHS 802

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            MK+ SR+  R  I+RD N FHHF  G CSC D+W
Sbjct: 803 AMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/406 (32%), Positives = 211/406 (51%), Gaps = 48/406 (11%)

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR---------------- 114
           +N L+N  SK G ++ ARK+FD+MPQ+   SWNT+I SY   GR                
Sbjct: 68  TNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSS 127

Query: 115 ---------------EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
                          + EA  LF +M  EG    S+FT+ SVL  C++   +   + +H 
Sbjct: 128 ITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKA-SQFTLGSVLRVCSSLGLIQTGEMIHG 186

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM--PERNEVTWSSMVAGFVQNELY 217
           F +K   + NVFV T L+D+YAKC  +S+A  +F+ +    +N V W++MV G+ QN   
Sbjct: 187 FVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDG 246

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            +A+  FR     G+E NQ+T  +++ AC+ + A   G+QVH  + K+GFGSN++  S+L
Sbjct: 247 YKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSAL 306

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           VDMYAKCG + +A  +   +E+ +VV WN+++ GF RH    E + LF+ M    +  ++
Sbjct: 307 VDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDD 366

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVK----QHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            T+ SVL+ C  +G +   KS   L++K     + ++ N      ++D+  + G +  AY
Sbjct: 367 YTFPSVLNCCV-VGSINP-KSVHGLIIKTGFENYKLVSNA-----LVDMYAKTGDMDCAY 419

Query: 394 DLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPD 437
            +   M  +     W SL+   +  N     L      ++ G+ PD
Sbjct: 420 TVFEKM-LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPD 464



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 147/282 (52%), Gaps = 35/282 (12%)

Query: 164 AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ-------NEL 216
           AA   +++    LL+  +K G ++DA ++F+ MP+++E +W++M++ +V         EL
Sbjct: 59  AASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEAREL 118

Query: 217 YE------------------------EALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           ++                        EA  LFR  ++ G + +QFT+ SV+  C+ L  +
Sbjct: 119 FDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLI 178

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMIS 310
             G+ +H  + K GF  N+F  + LVDMYAKC CV +A F+F G+E   KN VLW  M++
Sbjct: 179 QTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVT 238

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           G++++    + +  F  M   G+  N+ T+ ++L+ACS +     G+     +VK     
Sbjct: 239 GYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS-GFG 297

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            NV+  S ++D+  + G +  A +++  M  D   S W SL+
Sbjct: 298 SNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVS-WNSLM 338


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/553 (40%), Positives = 341/553 (61%), Gaps = 10/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA  I  GL      +  +++ Y KCG I  AR VFD MP +  VSWN +I  Y  NG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ALF  M+ EG    ++ +V + L AC     + E  ++H   ++  +D NV V  A
Sbjct: 244 REALALFNRMVEEG-VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNA 302

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +Y+KC  +  AS VF+ +  R +V+W++M+ G  QN   E+A+ LF R Q+  ++ +
Sbjct: 303 LITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPD 362

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            FT+ SVI A A ++  +Q + +H    +     +++  ++L+DMYAKCG V  A  +F+
Sbjct: 363 SFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFN 422

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
              E++V+ WN MI G+  H      + LFE+M+  G+ PNE T++SVLSACSH G+V++
Sbjct: 423 SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDE 482

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+ YF  M + + + P + HY  M+D+LGRAG + EA+  I  MP D   S++G++L +C
Sbjct: 483 GREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGAC 542

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           + ++N+ELAE +A+++F + P     H+LL+NIYA    W++VAR R  +  + ++K   
Sbjct: 543 KLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPG 602

Query: 476 KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S +++K        G  NH +  EIYS+L KL+EE+K +GY P+T+  +HDVED  K +
Sbjct: 603 WSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVEDDVKAQ 661

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           LL  HSEKLA+ FGL+   PG  I+I KNLR+C DCH+  K  S + GRE I+RD+ RFH
Sbjct: 662 LLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFH 721

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 722 HFKDGKCSCGDYW 734



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 206/373 (55%), Gaps = 4/373 (1%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           +A +SA A    L T  + L+ CA       G+  HA++   G++++ L +  L N Y+K
Sbjct: 48  VAMSSAGAPPV-LRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE-GKTPYSEFTVS 139
           C   + AR+VFD MP R  V+WN ++  Y  NG  + A+ + + M  E G+ P S  T+ 
Sbjct: 107 CRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS-ITLV 165

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           SVL ACA  R +  C++ H FA+++ ++  V V TA+LD Y KCG I  A  VF+ MP +
Sbjct: 166 SVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N V+W++M+ G+ QN    EAL LF R    G++    ++ + + AC  L  L +G +VH
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVH 285

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            +L + G  SN+   ++L+ MY+KC  V  A  VF  ++ +  V WN MI G +++  S 
Sbjct: 286 ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSE 345

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           + + LF +MQ   + P+  T +SV+ A + I    + +      ++ H +  +V+  + +
Sbjct: 346 DAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH-LDQDVYVLTAL 404

Query: 380 IDILGRAGLIHEA 392
           ID+  + G ++ A
Sbjct: 405 IDMYAKCGRVNIA 417


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 354/574 (61%), Gaps = 8/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ A L+SC    A   GK  H   + +  + D      L+  Y+K G I+ A++ F+EM
Sbjct: 207 TISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEM 266

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  ++ W+ +I  Y  + + +EA+ LF  M +      + FT +SVL ACA+   +   
Sbjct: 267 PKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLG 326

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H   LK  +D NVFV  AL+DVYAKCG I ++ ++F    E+NEV W++++ G+VQ 
Sbjct: 327 NQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQL 386

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+AL LF     L ++  + T SSV+ A A L AL  G+Q+H++  KT +  +   A
Sbjct: 387 GDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVA 446

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+DMYAKCG + DA   F  +++++ V WN +I G+S H   +E + LF+ MQQ+   
Sbjct: 447 NSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSK 506

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++ VLSACS+ G+++KG+++F  M++ + + P + HY+CM+ +LGR+G   EA  
Sbjct: 507 PNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVK 566

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI  +PF  +  +W +LL +C  ++NL+L ++ A+++  MEP +   H+LLSN+YA  +R
Sbjct: 567 LIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKR 626

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W+ VA  RK ++  +VKKE   SWVE +        G  +HP I  I++ LE L ++ + 
Sbjct: 627 WDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRD 686

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L DVED  K+ LL  HSE+LAL FGL+ +  G  IRI+KNLRIC DCH+ 
Sbjct: 687 AGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAV 746

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  RE ++RD+NRFHHF  G CSC D+W
Sbjct: 747 IKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 193/357 (54%), Gaps = 3/357 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ   R R P  GK  H  I+  G + D    NIL+N Y   G +  A K+FDEMP    
Sbjct: 10  LQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNT 69

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VS+ T+   ++ + + Q A  L + + REG    ++F  +++L    +      C  +H 
Sbjct: 70  VSFVTLAQGFSRSHQFQRARRLLLRLFREG-YEVNQFVFTTLLKLLVSMDLADTCLSVHA 128

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +  K     + FVGTAL+D Y+ CG +  A +VF+ +  ++ V+W+ MVA + +N  +E+
Sbjct: 129 YVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHED 188

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           +L+LF + +++G   N FTIS+ + +C GL A   GK VH    K  +  +++   +L++
Sbjct: 189 SLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLE 248

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ 338
           +Y K G + +A   F  + + +++ W+ MIS +++  +S E + LF +M+Q+  + PN  
Sbjct: 249 LYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNF 308

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           T+ SVL AC+ + ++  G      ++K   +  NVF  + ++D+  + G I  +  L
Sbjct: 309 TFASVLQACASLVLLNLGNQIHSCVLKV-GLDSNVFVSNALMDVYAKCGEIENSVKL 364



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 1/254 (0%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           RD    K LH   LK     ++F    LL+ Y   G + DAS++F+ MP  N V++ ++ 
Sbjct: 17  RDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLA 76

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            GF ++  ++ A  L  R    G E NQF  ++++     +        VHA + K G  
Sbjct: 77  QGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQ 136

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           ++ F  ++L+D Y+ CG V  A  VF GI  K++V W  M++ ++ +    + ++LF +M
Sbjct: 137 ADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQM 196

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           +  G  PN  T  + L +C+ +   + GKS     +K      +++    ++++  ++G 
Sbjct: 197 RIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKV-CYDRDLYVGIALLELYTKSGE 255

Query: 389 IHEAYDLILNMPFD 402
           I EA      MP D
Sbjct: 256 IAEAQQFFEEMPKD 269


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/589 (40%), Positives = 352/589 (59%), Gaps = 14/589 (2%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           A+ S  ++    + +T    ++ C   RA   G +    +   G        N+LIN Y 
Sbjct: 48  AMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYV 107

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
           K  L++ A ++FD+MPQR ++SW T+I +Y+     Q+A+ L + MLR+   P + +T S
Sbjct: 108 KFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP-NVYTYS 166

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           SVL +C    DV   + LH   +K  ++ +VFV +AL+DV+AK G   DA  VF+ M   
Sbjct: 167 SVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + + W+S++ GF QN   + AL LF+R +  G    Q T++SV+ AC GLA L  G Q H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             + K  +  ++   ++LVDMY KCG + DA  VF+ ++E++V+ W+TMISG +++  S 
Sbjct: 284 VHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQ 341

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LFE+M+ +G  PN  T + VL ACSH G++E G  YF  M K + + P   HY CM
Sbjct: 342 EALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCM 401

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           ID+LG+AG + +A  L+  M  +  A  W +LL +CR  RN+ LAE AAK++  ++P++A
Sbjct: 402 IDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDA 461

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           G + LLSNIYA +++W+ V   R  +RD  +KKE   SW+E+         G  +HP+I 
Sbjct: 462 GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIV 521

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           E+  KL +L+  +  +GY PET   L D+E  + ++ L HHSEKLAL FGLM L     I
Sbjct: 522 EVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVI 581

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RI KNLRICGDCH F K AS++  R  ++R   R+HHF +G CSC D+W
Sbjct: 582 RIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/543 (41%), Positives = 331/543 (60%), Gaps = 19/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y++ G +S AR++FDE P R + +W  ++  Y  NG   EA   F  M 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 127 REGKTPYSEFTVSSVLCA-CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
            + +  Y+      V        R++FE              RN+     ++  Y + G 
Sbjct: 294 EKNEVSYNAMIAGYVQTKKMDIARELFESMPC----------RNISSWNTMITGYGQIGD 343

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I+ A + F+ MP+R+ V+W++++AG+ Q+  YEEAL +F   +  G   N+ T    +  
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALST 403

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA +AAL  GKQ+H    K G+G+  F  ++L+ MY KCG + +A   F GIEEK+VV W
Sbjct: 404 CADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSW 463

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NTM++G++RH    + + +FE M+ AG+ P+E T + VLSACSH G++++G  YF  M K
Sbjct: 464 NTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK 523

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + V+P   HY+CMID+LGRAG + EA DLI NMPF   A+ WG+LL + R + N EL E
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--- 482
            AA+ +F MEP N+G ++LLSN+YAA+ RW +  + R  +RD  V+K    SWVE++   
Sbjct: 584 KAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKI 643

Query: 483 -----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                G  +HP    IY+ LE+L  +M++ GY   T+  LHDVE+  K+ +L +HSEKLA
Sbjct: 644 HTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLA 703

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FG++ +  G PIR+MKNLR+C DCHS +K  S+I GR  I+RD +RFHHF  G CSC 
Sbjct: 704 VAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCG 763

Query: 598 DFW 600
           D+W
Sbjct: 764 DYW 766



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 174/396 (43%), Gaps = 50/396 (12%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + D L  N  I+ + + G    A  VF+ MP+R  VS+N +I  Y  N +   A  LF  
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 125 MLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M       ++      V  C     R +F+             +++V    +LL  YA+ 
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP----------EKDVVSWNSLLSGYAQN 155

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR------------------ 225
           G + +A  VF++MPE+N ++W+ ++A +V N   EEA +LF                   
Sbjct: 156 GYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFV 215

Query: 226 RAQVLG---LEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDM 280
           R + LG     +++  +   I     ++   QG  +     L       ++F  +++V  
Sbjct: 216 RKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSG 275

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y + G + +A   F  + EKN V +N MI+G+ +  +      LFE M       N  ++
Sbjct: 276 YVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR----NISSW 331

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            ++++    IG + + + +FD+M ++  V      ++ +I    ++G   EA ++ + + 
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCV-----SWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 401 FDATA---SMWGSLLASCRNYRNLELAEIAAKQLFG 433
            D  +   + +G  L++C +   LEL     KQ+ G
Sbjct: 387 QDGESLNRATFGCALSTCADIAALEL----GKQIHG 418



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 49/253 (19%)

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           + G+++ G  YF  M ++++V P   HY+CMID+LGR   + E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
           G+LL + R + N EL E AA+  F M P N+G                 +++    +RD 
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISK----MRDV 857

Query: 469 EVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
            V+K    SW E++ K +   +    S+      E + +G+  E +  +    +  K+  
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSR------ERENIGFLEELDLKMR-EREEEKERT 910

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKN-LRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           L + SE LA   G++ +  G P R+MK  + +C DC S +K  S+I GR   +RD    H
Sbjct: 911 LKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRD---SH 967

Query: 588 HFTNGSCSCWDFW 600
            F    CSC ++W
Sbjct: 968 RFNESICSCGEYW 980



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    L +CA   A   GK  H + + MG        N L+  Y KCG I  A   F+ 
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +VSWNT++  Y  +G  ++A+ +F +M   G  P  E T+  VL AC +   + +
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP-DEITMVGVLSAC-SHTGLLD 512

Query: 154 CKQLHVFALKAAMDRNVFVG----TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
               + +++    D  V       T ++D+  + G + +A  +  +MP +    +W +++
Sbjct: 513 RGTEYFYSMTK--DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL 570

Query: 209 A 209
            
Sbjct: 571 G 571


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/576 (40%), Positives = 354/576 (61%), Gaps = 10/576 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           +S   + LQSC   +A   GK  HA+I  +G++ + L +  L+N Y  C  ++ A  +FD
Sbjct: 1   MSYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFD 60

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            + +R +  WN +I  Y  NG  + A++L+  M   G  P  +FT   VL AC+A   + 
Sbjct: 61  RISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVP-DKFTFPFVLKACSALSAME 119

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E K++H   +++ ++ +VFVG AL+D+YAKCG +  A +VF+ + ER+ V W+SM+A + 
Sbjct: 120 EGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYS 179

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN   +E+L L R     GL+  + T    I A A    L QGK++H    + GF SN  
Sbjct: 180 QNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDK 239

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+DMYAK G V  A  +F  +EEK VV WN MI+G++ H  + E + LF++M+   
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKV 299

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           L P+  T++ VL+ACSH G++ +GK +F  M+   N+ P V HY+CMID+LG  G + EA
Sbjct: 300 L-PDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y LI+ M  +  A +WG+LL SC+ + N+E+ E+A ++L  +EPD+ GN+++LSN+YA  
Sbjct: 359 YKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQA 418

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            +W+ VAR R L+ +  +KK  + SW+E+  K         +HP+   IY++L++  + M
Sbjct: 419 GKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLM 478

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K+ GY P+     HDVED  K +++  HSE+LA+ FGL+    G  + I+KNLRIC DCH
Sbjct: 479 KEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCH 538

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +KF S+I  RE  +RD+NR+HHF +G CSC DFW
Sbjct: 539 VAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/642 (38%), Positives = 347/642 (54%), Gaps = 80/642 (12%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + L+SC  +  P+  +  HA  +  GL  D   ++ L++ Y + G    AR VFD MP
Sbjct: 23  LPSALKSCPAQ--PL-ARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMP 79

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP----------------------- 132
           ++ +V W+ +I  Y+  G  + A  L   M   G  P                       
Sbjct: 80  EKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVT 139

Query: 133 -----YSEF---TVSSVLCACAAKRDVFEC---KQLHVFALKAAMDRNVFVGTALLDVYA 181
                +SE      + V CA +A  DV E    KQ+H + +KA    +  V TAL+D+Y 
Sbjct: 140 ALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYG 199

Query: 182 KCGLISDASRVFESMP-----------------------------------ERNEVTWSS 206
           KCG   +  RVF                                       E N V+W+S
Sbjct: 200 KCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTS 259

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           +VA  VQN    EA+ LFR  Q +G+E N  TI  V+ A A +AAL+ G+  H    + G
Sbjct: 260 IVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKG 319

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           F  +++  S+LVDMYAKCG    A  +F  +  +NVV WN MI G++ H  +   + LF 
Sbjct: 320 FLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFC 379

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            MQ+    P+  T+  VL ACS  G+ E+G+ YF+ M + H + P + HY+CM+ +LGR+
Sbjct: 380 SMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRS 439

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G + EAYDLI  MPF+  + +WGSLL SCR Y N+ LAE+AA++LF +EP NAGN++LLS
Sbjct: 440 GKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLS 499

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLE 498
           NIYA+ + W+ V R R  +++  +KKEK  SW+EIK        G  +HP +  I  KL 
Sbjct: 500 NIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLN 559

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           +L  EM +LG+ P  +  LHDVE+  K  +L  HSEKLA+  GL+   PG P+R++KNLR
Sbjct: 560 QLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLR 619

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ICGDCH  MKF S    RE  VRD NRFHHF +G CSC D+W
Sbjct: 620 ICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 15/183 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L + A   A + G+  H   +  G  +D    + L++ Y+KCG    AR +FD M
Sbjct: 291 TIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAM 350

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-------A 147
           P R +VSWN +IG Y  +G    AV LF +M +  + P    T + VL AC+        
Sbjct: 351 PSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKP-DLVTFTCVLGACSQAGLTEEG 409

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
           +R   E +Q H   +   M+    + T L     + G + +A  +   MP E +   W S
Sbjct: 410 RRYFNEMQQGH--GISPRMEHYACMVTLL----GRSGKLDEAYDLINEMPFEPDSCIWGS 463

Query: 207 MVA 209
           ++ 
Sbjct: 464 LLG 466


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 353/578 (61%), Gaps = 11/578 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +L+T+     +CA     + GKV H+  I    L+ +   +N L++ YSKCG ++ A +V
Sbjct: 351 DLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRV 410

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F+ M ++ +VSW ++I  Y   G    A+ LF  M   G  P   + V+S+L ACA   +
Sbjct: 411 FERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVP-DVYAVTSILNACAINGN 469

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K +H +  +  ++ N FV  AL D+YAKCG + DA  VF  M +++ ++W++M+ G
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N L  EAL LF   Q    + +  T++ ++ ACA LAAL +G+++H    + G+  +
Sbjct: 530 YTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSED 588

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            +  +++VDMY KCG +V A  +F  I  K++V W  MI+G+  H    E +  F +M+ 
Sbjct: 589 KYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRM 648

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ P+E ++IS+L ACSH G++++G   F++M K+  + PN+ HY+CM+D+L R G + 
Sbjct: 649 TGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLV 708

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +A+  I  MP    A++WG+LL  CR + +++LAE  A+++F +EP+N G ++LL+NIYA
Sbjct: 709 KAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYA 768

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
              +WEEV + RK I    +KK    SW+EIKGK N         P+  +I   L++L  
Sbjct: 769 EAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRS 828

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           +MK+ GY P+T + L + ++  K+  L  HSEKLA+ FG++ L PG  IR+ KNLR+CGD
Sbjct: 829 KMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGD 888

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH   KF S+ A RE I+RD +RFHHF +GSCSC  +W
Sbjct: 889 CHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 208/391 (53%), Gaps = 5/391 (1%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           +S N+N  +L    + LQ CA  ++   G+   + I   G+  D +    L+  Y KCG 
Sbjct: 142 SSQNSN-FDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGD 200

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +   R VFD++ +  I  WN +I  Y+ +G   E++ LF  ML  G  P S +T SS+L 
Sbjct: 201 LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNS-YTFSSILK 259

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
             AA   V E +Q+H    K   +    V  +L+  Y     +  A ++F+ + +R+ ++
Sbjct: 260 CFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVIS 319

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+SM++G+V+N L +  + +F +  V G++ +  T+ +V  ACA +  L+ GK +H+   
Sbjct: 320 WNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSI 379

Query: 264 KTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
           K       +   ++L+DMY+KCG +  A  VF  ++EK VV W +MI+G+ R   S   +
Sbjct: 380 KAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAI 439

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LF++M+  G+ P+     S+L+AC+  G ++ GK   D  ++++N+  N F  + + D+
Sbjct: 440 KLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDY-IRENNLETNSFVSNALTDM 498

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
             + G + +A+D+  +M      S W +++ 
Sbjct: 499 YAKCGSMKDAHDVFSHMKKKDVIS-WNTMIG 528


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/574 (39%), Positives = 344/574 (59%), Gaps = 11/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  +  +SC   R    GK  H     +G  +DT   N L+N YS CG +  ARKVFD+M
Sbjct: 90  TFPSLFKSC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKM 146

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW T+IG +    +  EAV LF  M++      +E T+ +VL ACA  RD+   
Sbjct: 147 EDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMV 206

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H +  +    R+V + T L+DVY KCG +  A  +F+   E+N  +W+ M+ G V++
Sbjct: 207 KRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVED 266

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             YEEAL+LFR  Q  G++ ++ T++S++ AC  L AL  GK +HA + K     ++   
Sbjct: 267 SNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALG 326

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG +  A  VF  + EK+V+ W  +I G +   ++   +  F++M   G+ 
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVK 386

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ VL+ACSH G V++G S+F+ M   + + P + HY  ++DILGRAG I EA +
Sbjct: 387 PDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEE 446

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI +MP      + G LL +CR + NLE AE AAKQL  ++P ++G ++LLSNIY ++++
Sbjct: 447 LIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKK 506

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKK 506
           WEE  R R+L+ +  ++K    S +E        +KG  +H + +EI   LE ++ ++K 
Sbjct: 507 WEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKN 566

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L D+ +  K+  L  HSEKLA+ FGL+    G PIR++KNLRIC DCHS 
Sbjct: 567 AGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSA 626

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S++  RE IVRD NRFHHF +G+CSC  FW
Sbjct: 627 TKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 202/391 (51%), Gaps = 13/391 (3%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYS--KCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA+++  GL  D  T++ ++ F S  + G +  AR VF ++P     + N+II   T
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
                QEA+  +  M+ +G  P   +T  S+  +C   R+  E KQ+H  + K     + 
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIP-DRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFASDT 120

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQV 229
           +    L+++Y+ CG +  A +VF+ M ++  V+W++M+    Q +   EA+ LF R  + 
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKS 180

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             ++ N+ T+ +V+ ACA    L   K++H  + + GFG ++   + L+D+Y KCGCV  
Sbjct: 181 ENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL 240

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  +F   +EKN+  WN MI+G    +   E ++LF +MQ  G+  ++ T  S+L AC+H
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
           +G +E GK +    +K+  +  +V   + ++D+  + G I  A  +   MP +     W 
Sbjct: 301 LGALELGK-WLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWT 358

Query: 410 SL---LASCRNYRNLELAEIAAKQLFGMEPD 437
           +L   LA C    N  L       + G++PD
Sbjct: 359 ALILGLAMCGQAEN-ALQYFDEMHIKGVKPD 388



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDM--YAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           Q KQ+HA + +TG   + F AS +V      + G +  A  VFS I        N++I G
Sbjct: 3   QLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            +      E ++ +++M   GL P+  T+ S+  +C
Sbjct: 63  CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC 98


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 347/575 (60%), Gaps = 10/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    L +CAR      G+    +    G  +D    + L++ Y++ G +  A KVF  
Sbjct: 109 TTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVR 168

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R  V+W+T++  + + G+  +A+ ++  M RE      E  +  V+ AC A R+V  
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-REDGVKGDEVVMIGVIQACTAARNVRM 227

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H   L+  M  +V   T+L+D+YAK GL+  A RVF  M  RN+V+WS+M++GF Q
Sbjct: 228 GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQ 287

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   +EAL LFR  Q  G++ +   + S + AC+ +  L  G+ VH  + +  F  N   
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCIL 346

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++ +DMY+KCG +  A  +F+ I +++++LWN MI+    H R  + + LF++M + G+
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+ S+LSA SH G+VE+GK +F  MV    + P   HY C++D+L R+GL+ EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           DL+ +M  + T ++W +LL+ C N + LEL E  A  +  ++PD+ G   L+SN+YAA +
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMK 505
           +W++V + RKL++DS  KK    S +EI+G R        +HP+  EI SK+ KL  EM+
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K+GY P TE   HD+E+  K++ L +HSE+LA+ FGL+   PG  + I+KNLR+CGDCH 
Sbjct: 587 KMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHD 646

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S+IA RE +VRD  RFHHF +G CSC D+W
Sbjct: 647 AIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 183/342 (53%), Gaps = 7/342 (2%)

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           ++  G    A+ +F  +    +   + FT++  L ACA   D+   + +   A  A    
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLA--LSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           +VFV ++LL +YA+ G + DA +VF  MP R+ VTWS+MVAGFV      +A+ ++RR +
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G++ ++  +  VI AC     +  G  VH  L + G   ++  A+SLVDMYAK G + 
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  VF  +  +N V W+ MISGF+++ +S E + LF  MQ +G+ P+    +S L ACS
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           +IG ++ G+S    +V++ +   N    +  ID+  + G +  A  ++ NM  D    +W
Sbjct: 322 NIGFLKLGRSVHGFIVRRFDF--NCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILW 378

Query: 409 GSLLASCRNYRNLELAEIAAKQL--FGMEPDNAGNHLLLSNI 448
            +++A C  +   + A    +++   GM PD+A    LLS +
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/571 (40%), Positives = 357/571 (62%), Gaps = 15/571 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM-PQRC 98
           L+ C+++R     K  H  ++  G          L+  YSKC  +  A K+F        
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +V+W  +IG +  N   ++AV LF  M REG  P + FT S+VL    A +      QLH
Sbjct: 373 VVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRP-NHFTYSTVL----AGKPSSLLSQLH 427

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +KA  ++   V TALLD Y K G + +++RVF S+P ++ V WS+M+ G  Q    E
Sbjct: 428 AQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSE 487

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNMFAASSL 277
           +A+ +F +    G++ N++T SSVI AC+  AA ++ GKQ+HA   K+G  + +  +S+L
Sbjct: 488 KAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSAL 547

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY+K G +  A  VF+  EE+++V WN+MI+G+ +H  + + + +F+ MQ  GL  ++
Sbjct: 548 LTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDD 607

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+I VL+AC+H G+VE+G+ YF++M+K +++     HYSCM+D+  RAG+  +A D+I 
Sbjct: 608 VTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIIN 667

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            MPF A+ ++W +LLA+CR +RNLEL ++AA++L  ++P++A  ++LLSNI+A    WEE
Sbjct: 668 GMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEE 727

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
            A  RKL+ + +VKKE   SW+EIK        G  +HP    +Y+KLE+L  ++K +GY
Sbjct: 728 KAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGY 787

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
           +P+T +  HDVE+  K+ +L  HSE+LA+ +GL+ L PG PI+I KNLRICGDCH+ ++ 
Sbjct: 788 QPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIEL 847

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S I  R  IVRD NRFHHF  G CSC  +W
Sbjct: 848 ISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 206/446 (46%), Gaps = 14/446 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+ C      V G+  H + +  G   D      L++ Y K       R +FDEM
Sbjct: 106 TLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEM 165

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW +++  Y  NG   E + L   M  EG  P + FT ++VL A A +  +   
Sbjct: 166 GIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNP-NGFTFATVLGALADESIIEGG 224

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H   +K   +   FV  AL+ +Y K  ++ DA  VF+SM  R+ VTW+ M+ G+   
Sbjct: 225 VQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAI 284

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             Y E   +F R ++ G++ ++    + +  C+    L   KQ+H  + K G+       
Sbjct: 285 GFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           ++L+  Y+KC  V +A+ +FS  +   NVV W  MI GF ++  + + + LF +M + G+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGV 404

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  TY +VL+      +    + +  ++   +  +P+V   + ++D   + G + E+ 
Sbjct: 405 RPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSV--ATALLDAYVKTGNVVESA 459

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAA 451
            +  ++P     + W ++L      R+ E A     QL   G++P    N    S++  A
Sbjct: 460 RVFYSIPAKDIVA-WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKP----NEYTFSSVINA 514

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKS 477
                      K I  + VK  KS +
Sbjct: 515 CSSSAATVEHGKQIHATAVKSGKSNA 540



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 149/284 (52%), Gaps = 12/284 (4%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A ++FDE P + I  +N ++  ++ N  ++EA+ LF ++   G       T+S  L  C 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSG-LGVDGLTLSCALKVCG 115

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              D    +Q+H  +LK+    +V VGT+L+D+Y K     D   +F+ M  +N V+W+S
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           +++G+ +N L +E + L  + Q+ G+  N FT ++V+ A A  + +  G QVHA++ K G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           F    F  ++L+ MY K   V DA  VF  +  ++ V WN MI G++     +E   +F 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 327 KMQQAGLHPNEQTYISVLSACS-----------HIGMVEKGKSY 359
           +M+ AG+  +   + + L  CS           H G+V+ G  +
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF 339



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 96/177 (54%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A ++F+  P ++   ++ ++  F +N    EAL LF+     GL  +  T+S  +  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L   + G+QVH    K+GF  ++   +SLVDMY K     D   +F  +  KNVV W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +SG++R+  + EV+ L  +MQ  G++PN  T+ +VL A +   ++E G     ++VK
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVK 233


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 347/575 (60%), Gaps = 10/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    L +CAR      G+    +    G  +D    + L++ Y++ G +  A KVF  
Sbjct: 109 TTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVR 168

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R  V+W+T++  + + G+  +A+ ++  M RE      E  +  V+ AC A R+V  
Sbjct: 169 MPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM-REDGVKGDEVVMIGVIQACTAARNVRM 227

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H   L+  M  +V   T+L+D+YAK GL+  A RVF  M  RN+V+WS+M++GF Q
Sbjct: 228 GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQ 287

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   +EAL LFR  Q  G++ +   + S + AC+ +  L  G+ VH  + +  F  N   
Sbjct: 288 NGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCIL 346

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++ +DMY+KCG +  A  +F+ I +++++LWN MI+    H R  + + LF++M + G+
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+ S+LSA SH G+VE+GK +F  MV    + P   HY C++D+L R+GL+ EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           DL+ +M  + T ++W +LL+ C N + LEL E  A  +  ++PD+ G   L+SN+YAA +
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMK 505
           +W++V + RKL++DS  KK    S +EI+G R        +HP+  EI SK+ KL  EM+
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K+GY P TE   HD+E+  K++ L +HSE+LA+ FGL+   PG  + I+KNLR+CGDCH 
Sbjct: 587 KMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHD 646

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S+IA RE +VRD  RFHHF +G CSC D+W
Sbjct: 647 AIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 183/342 (53%), Gaps = 7/342 (2%)

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           ++  G    A+ +F  +    +   + FT++  L ACA   D+   + +   A  A    
Sbjct: 84  HSRRGSPASALRVFRALPPAARPDSTTFTLA--LSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           +VFV ++LL +YA+ G + DA +VF  MP R+ VTWS+MVAGFV      +A+ ++RR +
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G++ ++  +  VI AC     +  G  VH  L + G   ++  A+SLVDMYAK G + 
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  VF  +  +N V W+ MISGF+++ +S E + LF  MQ +G+ P+    +S L ACS
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           +IG ++ G+S    +V++ +   N    +  ID+  + G +  A  ++ NM  D    +W
Sbjct: 322 NIGFLKLGRSVHGFIVRRFDF--NCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILW 378

Query: 409 GSLLASCRNYRNLELAEIAAKQL--FGMEPDNAGNHLLLSNI 448
            +++A C  +   + A    +++   GM PD+A    LLS +
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 347/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C R  +   G   H+ ++  G N+D      L++ YS  G ++ A K+FDE+
Sbjct: 113 TFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEI 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+W  +   YTT+GR +EA+ LF  M+  G  P S F V  VL AC    D+   
Sbjct: 173 PDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQ-VLSACVHVGDLDSG 231

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +  +  M +N FV T L+++YAKCG +  A  VF+SM E++ VTWS+M+ G+  N
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E + LF +     L+ +QF+I   + +CA L AL  G+   +++ +  F +N+F A
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMA 351

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG +   + VF  ++EK++V+ N  ISG +++        +F + ++ G+ 
Sbjct: 352 NALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGIS 411

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ +L  C H G+++ G  +F+ +   + +   V HY CM+D+ GRAG++ +AY 
Sbjct: 412 PDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYR 471

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI +MP    A +WG+LL+ CR  ++ +LAE   K+L  +EP NAGN++ LSNIY+   R
Sbjct: 472 LICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGR 531

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+E A  R ++    +KK    SW+E++GK        ++HP   +IY+KLE L  EM+ 
Sbjct: 532 WDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRL 591

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +G+ P TE    DVE+  K+ +L +HSEKLA+  GL+    G  IR++KNLR+CGDCH  
Sbjct: 592 MGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEV 651

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MK  S+I  RE +VRD NRFH FTNGSCSC D+W
Sbjct: 652 MKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 210/425 (49%), Gaps = 15/425 (3%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILIN-- 76
           S +   SA +   ++ TL +   +C         K  H  +I   L++DT   N+L+   
Sbjct: 2   SIVTVPSATSKVQQIKTLISV--ACTVNHL----KQIHVSLINHHLHHDTFLVNLLLKRT 55

Query: 77  -FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
            F+ +      +  +F       I  +N++I  +  N    E + LF+++ + G   +  
Sbjct: 56  LFFRQTKY---SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHG- 111

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT   VL AC           LH   +K   + +V   T+LL +Y+  G ++DA ++F+ 
Sbjct: 112 FTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDE 171

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           +P+R+ VTW+++ +G+  +  + EA+ LF++   +G++ + + I  V+ AC  +  L  G
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           + +   + +     N F  ++LV++YAKCG +  A  VF  + EK++V W+TMI G++ +
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
           +   E + LF +M Q  L P++ + +  LS+C+ +G ++ G+    L + +H  L N+F 
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISL-IDRHEFLTNLFM 350

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN-YRNLELAEIAAKQLFGM 434
            + +ID+  + G +   +++   M       M  ++    +N +  L  A     +  G+
Sbjct: 351 ANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGI 410

Query: 435 EPDNA 439
            PD +
Sbjct: 411 SPDGS 415


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 342/580 (58%), Gaps = 10/580 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A   +T  + L +C+  +A   GK+ H+ I   G ++D    N LI+ Y++CG +  AR+
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F  MP+R ++SWN II  Y       EA+ L+  M  EG  P    T   +L ACA   
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKP-GRVTFLHLLSACANSS 445

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
              + K +H   L++ +  N  +  AL+++Y +CG + +A  VFE    R+ ++W+SM+A
Sbjct: 446 AYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIA 505

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G  Q+  YE A  LF+  Q   LE +  T +SV+  C    AL  GKQ+H  + ++G   
Sbjct: 506 GHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   ++L++MY +CG + DA  VF  ++ ++V+ W  MI G +     ++ + LF +MQ
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 330 QAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
             G  P +  T+ S+LSAC+H G+V +G   F  M  ++ VLP + HY C++ +LGRA  
Sbjct: 626 NEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARR 685

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
             EA  LI  MPF   A++W +LL +CR + N+ LAE AA     +   N   ++LLSN+
Sbjct: 686 FQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNV 745

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKL 500
           YAA  RW++VA+ R+++    ++KE  +SW+E        I   R+HP  AEIY++L++L
Sbjct: 746 YAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRL 805

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
             EM++ GY P+T+H LHD+  + ++  L  HSE+LA+ +GL+   PG PIRI KNLRIC
Sbjct: 806 SVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRIC 865

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCH+  KF S++ GRE I RD NRFH F NG CSC D+W
Sbjct: 866 GDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 208/383 (54%), Gaps = 3/383 (0%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T+ +T  A LQ+C R+R     K  HA+++  G+  D   SN+LIN Y KC  +  A +V
Sbjct: 25  TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F EMP+R ++SWN++I  Y   G +++A  LF  M   G  P ++ T  S+L AC +  +
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP-NKITYISILTACYSPAE 143

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K++H   +KA   R+  V  +LL +Y KCG +  A +VF  +  R+ V++++M+  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q    +E L LF +    G+  ++ T  +++ A    + L +GK++H +  + G  S+
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   ++LV M  +CG V  A   F GI +++VV++N +I+  ++H  +VE    + +M+ 
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+  N  TY+S+L+ACS    +E GK      + +     +V   + +I +  R G + 
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGK-LIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 391 EAYDLILNMPFDATASMWGSLLA 413
           +A +L   MP     S W +++A
Sbjct: 383 KARELFYTMPKRDLIS-WNAIIA 404



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 194/364 (53%), Gaps = 3/364 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H   +  GLN+D      L+    +CG +  A++ F  +  R +V +N +I +   
Sbjct: 248 GKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQ 307

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +G   EA   +  M  +G    +  T  S+L AC+  + +   K +H    +     +V 
Sbjct: 308 HGHNVEAFEQYYRMRSDG-VALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQ 366

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G AL+ +YA+CG +  A  +F +MP+R+ ++W++++AG+ + E   EA+ L+++ Q  G
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++  + T   ++ ACA  +A   GK +H  + ++G  SN   A++L++MY +CG +++A 
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF G + ++V+ WN+MI+G ++H        LF++MQ   L P+  T+ SVLS C +  
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +E GK      + +  +  +V   + +I++  R G + +A ++  ++      S W ++
Sbjct: 547 ALELGKQIHG-RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAM 604

Query: 412 LASC 415
           +  C
Sbjct: 605 IGGC 608



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 216/410 (52%), Gaps = 13/410 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C        GK  H++II  G   D    N L++ Y KCG +  AR+VF  +
Sbjct: 130 TYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGI 189

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VS+NT++G Y      +E + LF  M  EG +P  + T  ++L A      + E 
Sbjct: 190 SPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISP-DKVTYINLLDAFTTPSMLDEG 248

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H   ++  ++ ++ VGTAL+ +  +CG +  A + F+ + +R+ V +++++A   Q+
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQH 308

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA   + R +  G+  N+ T  S++ AC+   AL  GK +H+ + + G  S++   
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MYA+CG +  A  +F  + +++++ WN +I+G++R     E M L+++MQ  G+ 
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P   T++ +LSAC++      GK   + +++   +  N    + ++++  R G + EA +
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQN 487

Query: 395 LILNMPFDATASM----WGSLLASCRNYRNLELAEIAAKQLFG--MEPDN 438
           +     F+ T +     W S++A    + + E A    +++    +EPDN
Sbjct: 488 V-----FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 144/254 (56%), Gaps = 3/254 (1%)

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G ++E V+   N  +   T     T  ++L  C  KR + E K++H   ++A +  ++F+
Sbjct: 8   GPDREDVS---NTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFL 64

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
              L+++Y KC  + DA +VF+ MP R+ ++W+S+++ + Q    ++A  LF   Q  G 
Sbjct: 65  SNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGF 124

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             N+ T  S++ AC   A L  GK++H+ + K G+  +    +SL+ MY KCG +  A  
Sbjct: 125 IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF+GI  ++VV +NTM+  +++ A   E + LF +M   G+ P++ TYI++L A +   M
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 353 VEKGKSYFDLMVKQ 366
           +++GK    L V++
Sbjct: 245 LDEGKRIHKLTVEE 258


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/616 (38%), Positives = 340/616 (55%), Gaps = 79/616 (12%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG--------- 113
           G++ D   ++ L++ Y + G  + AR V D MP R +V W+ +I ++ ++G         
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 114 --------------------------REQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
                                     R ++AV   + M  EG  P +   VS  L A   
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDAT-GVSCALSAVGD 168

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP---------- 197
             DV   +QLH + +KA    +  V TAL+D+Y KCG   +  RVF+             
Sbjct: 169 VGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNAL 228

Query: 198 -------------------------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
                                    E N V+W+S+VA  VQN    EA+ LFR  Q  G+
Sbjct: 229 VAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI 288

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           E N  TI  V+ A A +AAL+ G+  H    + GF  +++  S+LVDMYAKCG V DA  
Sbjct: 289 EPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARM 348

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F  +  +NVV WN MI G++ H  +   + LF  MQ +   P+  T+  VL ACS  G 
Sbjct: 349 IFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGW 408

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            E+G+SYF+ M  +H + P + HY+CM+ +LGRAG + +AYD+I  MPF+    +WGSLL
Sbjct: 409 TEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLL 468

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
            SCR + N+ LAE+AA+ LF +EP+NAGN++LLSNIYA+ + W+ V R R +++   +KK
Sbjct: 469 GSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKK 528

Query: 473 EKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           EK  SW+EIK        G  +HP +A I  KL+ L  EM++LG+ P T++ LHDVE+  
Sbjct: 529 EKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQE 588

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K ++L  HSEKLA+  GL+    G P++++KNLRICGDCH  MKF S    RE  VRD N
Sbjct: 589 KDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTN 648

Query: 585 RFHHFTNGSCSCWDFW 600
           RFHHF +G CSC D+W
Sbjct: 649 RFHHFKDGKCSCADYW 664



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L + A   A + G+  H   +  G ++D    + L++ Y+KCG +  AR +F+ M
Sbjct: 294 TIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAM 353

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK------ 148
           P R +VSWN +IG Y  +G  + AV LF +M    + P    T + VL AC+        
Sbjct: 354 PYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKP-DLVTFTCVLGACSQAGWTEEG 412

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
           R  F   Q H   +   M+    + T L     + G + DA  +   MP E +   W S+
Sbjct: 413 RSYFNEMQ-HKHGISPRMEHYACMVTLL----GRAGKLDDAYDIINQMPFEPDGCIWGSL 467

Query: 208 VA 209
           + 
Sbjct: 468 LG 469


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 356/580 (61%), Gaps = 21/580 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           TL + L +C    +   G+  H+  + +GL +D+  S  L++ Y+K      +  AR+VF
Sbjct: 257 TLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVF 316

Query: 92  DEMPQRCIVSWNTIIGSYTTNG-REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           + MP+  +++W  ++  Y   G ++ + + LF  ML EG  P +  T SS+L ACA   D
Sbjct: 317 NRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRP-NHITYSSMLKACANLGD 375

Query: 151 VFECKQLHVFALKAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
               +Q+H   +K+ + D NV VG AL+ +YA+ G I +A   F+ + E+N V++S  + 
Sbjct: 376 QDSGRQIHTHCVKSNLADLNV-VGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLD 434

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G  ++  Y++  I     + + L  + FT  S+I A A +  L +G+++HA+  K GFGS
Sbjct: 435 GDGRSNTYQDYQI-----ERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGS 489

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +    +SLV MY++CG +VDA  VF  + + NV+ W +MISG ++H  +   + LF  M 
Sbjct: 490 DRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMI 549

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            AG+ PN+ TYI+VLSACSH G+V++GK +F +M K H ++P + HY+CM+D+LGR+GL+
Sbjct: 550 AAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLV 609

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            +A D I  MP    A +W +LL +C+ + N+++ EIAA  +  +EP +   ++LLSN+Y
Sbjct: 610 EDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLY 669

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           A    W++VAR R L+RD  + KEK  SW+ +         G  +HP+  EIY+KLE L+
Sbjct: 670 AEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLI 729

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM-CLCPGVPIRIMKNLRIC 560
            E+K +GY P+T   LHD+ D  K+  L+ HSEK+A+ FGL+ C     PIRI KNLR+C
Sbjct: 730 REIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVC 789

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCHS +K+ S+  GRE I+RD NRFH   +G CSC ++W
Sbjct: 790 VDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 187/352 (53%), Gaps = 14/352 (3%)

Query: 52  GKVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIG 107
           G+     ++  G  L  D + +N L+  YSKC  ++ AR VFD MP   R +VSW  +  
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
             + NG E EA+ LF   L EG  P + FT+ +   AC A  ++F      V  L   + 
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLP-NAFTLCAATQACFAS-ELFHLAGGAVLGLVFKLG 183

Query: 168 ---RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
               +V VG AL+D++AK G +    RVF+ + ER  V W+ ++  + Q+   +EA+ LF
Sbjct: 184 FWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELF 243

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
                 G + +Q+T+SS++ AC  L +   G+Q+H++  + G  S+   +  LVDMYAK 
Sbjct: 244 LDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKS 303

Query: 285 ---GCVVDAYFVFSGIEEKNVVLWNTMISGF-SRHARSVEVMILFEKMQQAGLHPNEQTY 340
                + +A  VF+ + + NV+ W  ++SG+  R ++  +VMILF KM   G+ PN  TY
Sbjct: 304 HNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITY 363

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            S+L AC+++G  + G+      VK +    NV   + ++ +   +G I EA
Sbjct: 364 SSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVG-NALVSMYAESGSIEEA 414


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/571 (41%), Positives = 345/571 (60%), Gaps = 14/571 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    ++ C   RA   G +    +   G        N+LIN Y K  L++ A ++FD+
Sbjct: 14  ATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQ 73

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MPQR ++SW T+I +Y+     Q+A+ L + MLR+G  P + +T SSVL AC    DV  
Sbjct: 74  MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRP-NVYTYSSVLRACNGMSDV-- 130

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + LH   +K  ++ +V+V +AL+DV+AK G   DA  VF+ M   + + W+S++ GF Q
Sbjct: 131 -RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 189

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   + AL LF+R +  G    Q T++SV+ AC GLA L  G Q H  + K  +  ++  
Sbjct: 190 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLIL 247

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LVDMY KCG + DA  VF+ ++E++V+ W+TMISG +++  S E + LFE M+ +G 
Sbjct: 248 NNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGT 307

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T + VL ACSH G++E G  YF  M K + + P   HY CMID+LG+AG + +A 
Sbjct: 308 KPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAV 367

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            L+  M  +  A  W +LL +CR  RN+ LAE AAK++  ++P++AG + +LSNIYA ++
Sbjct: 368 KLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQ 427

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           +W+ V   RK +RD  +KKE   SW+E+         G  +HP+I E+  KL +L+  + 
Sbjct: 428 KWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLI 487

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY PET   L D+E  + ++ L HHSEKLAL FGLM L     IRI KNLRICGDCH 
Sbjct: 488 GIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHV 547

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           F K AS++  R  ++RD  R+HHF +G CSC
Sbjct: 548 FCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 27/198 (13%)

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q  GL  +  T S +I  C    A+ +G  +   L   G    MF  + L++MY K   +
Sbjct: 5   QSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLL 64

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSR---HARSVEVMILFEKMQQAGLHPNEQTYISVL 344
            DA+ +F  + ++NV+ W TMIS +S+   H +++E+++L   M + G+ PN  TY SVL
Sbjct: 65  NDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL---MLRDGVRPNVYTYSSVL 121

Query: 345 SACS--------HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
            AC+        H G++++G            +  +V+  S +ID+  + G   +A  + 
Sbjct: 122 RACNGMSDVRMLHCGIIKEG------------LESDVYVRSALIDVFAKLGEPEDALSVF 169

Query: 397 LNMPFDATASMWGSLLAS 414
             M     A +W S++  
Sbjct: 170 DEM-VTGDAIVWNSIIGG 186


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 365/578 (63%), Gaps = 13/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           TL   + +CA       G+  H  ++  GL+ D      L++ Y+KC   G +  ARKVF
Sbjct: 147 TLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVF 206

Query: 92  DEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           D MP   ++SW  II  Y  +G  ++EA+ LF+ M+ +G+   + FT SSVL ACA   D
Sbjct: 207 DRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV-QGQVKPNHFTFSSVLKACANLSD 265

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           ++  +Q++   +K  +     VG +L+ +Y++CG + +A + F+ + E+N V+++++V  
Sbjct: 266 IWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNA 325

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + ++   EEA  LF   +  G   N FT +S++   + + A+ +G+Q+H+ + K+GF SN
Sbjct: 326 YAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSN 385

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   ++L+ MY++CG +  A+ VF+ + + NV+ W +MI+GF++H  +   +  F KM +
Sbjct: 386 LHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLE 445

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ PNE TYI+VLSACSH+G++ +G  +F  M  +H ++P + HY+C++D+LGR+G + 
Sbjct: 446 AGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLE 505

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA +L+ +MPF A A +  + L +CR + N++L + AA+ +   +P +   ++LLSN++A
Sbjct: 506 EAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHA 565

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           +  +WEEVA  RK +++  + KE   SW+E++        G  +HP+  EIY +L++L  
Sbjct: 566 SAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLAL 625

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++K+LGY P T+  LHDVE+ +K++ L  HSEK+A+ +G +      PIR+ KNLR+CGD
Sbjct: 626 KIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGD 685

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+  K+ S +  +E ++RD NRFHHF +G+CSC D+W
Sbjct: 686 CHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKC-GLISGARKVFDE 93
                ++C+ +     GK+    ++  G   +D      LI+ + K  G +  A KVFD 
Sbjct: 45  FTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDR 104

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R +V+W  +I  +   G  ++AV LF++M+  G  P   FT+S V+ ACA    +  
Sbjct: 105 MPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVP-DRFTLSGVVSACAEMGLLSL 163

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKC---GLISDASRVFESMPERNEVTWSSMVAG 210
            +Q H   +K+ +D +V VG +L+D+YAKC   G + DA +VF+ MP  N ++W++++ G
Sbjct: 164 GRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITG 223

Query: 211 FVQNELYE-EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           +VQ+   + EA+ LF       ++ N FT SSV+ ACA L+ +  G+QV+A++ K    S
Sbjct: 224 YVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLAS 283

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
                +SL+ MY++CG + +A   F  + EKN+V +NT+++ +++   S E   LF +++
Sbjct: 284 INCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIE 343

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            AG   N  T+ S+LS  S IG + KG+     ++K      N+   + +I +  R G I
Sbjct: 344 GAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHICNALISMYSRCGNI 402

Query: 390 HEAYDLILNMPFDATASMWGSLL 412
             A+  + N   D     W S++
Sbjct: 403 EAAFQ-VFNEMGDGNVISWTSMI 424



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 155/276 (56%), Gaps = 7/276 (2%)

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R +VSW+ +I  Y  N +  EA++ F +ML  G  P +E+  + V  AC+ K ++   K
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYP-NEYCFTGVFRACSNKENISLGK 62

Query: 156 QLHVFALKAA-MDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +  F LK    + +V VG AL+D++ K  G +  A +VF+ MP+RN VTW+ M+  F Q
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
                +A+ LF    + G   ++FT+S V+ ACA +  L  G+Q H ++ K+G   ++  
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 274 ASSLVDMYAKC---GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-SVEVMILFEKMQ 329
             SLVDMYAKC   G V DA  VF  +   NV+ W  +I+G+ +      E + LF +M 
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           Q  + PN  T+ SVL AC+++  +  G+  + L+VK
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVK 278


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 351/579 (60%), Gaps = 10/579 (1%)

Query: 30   ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
              +L+TL  ++ +CA   +   G+  H + +    + + + +N L++ YSKCG ++ A +
Sbjct: 651  GVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQ 710

Query: 90   VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
             F++M Q+ +VSW ++I +Y   G   +A+ LF  M  +G +P   ++++SVL ACA   
Sbjct: 711  AFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSP-DVYSMTSVLHACACGN 769

Query: 150  DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
             + + + +H +  K  M   + V  AL+D+YAKCG + +A  VF  +P ++ V+W++M+ 
Sbjct: 770  SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 210  GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            G+ +N L  EAL LF   Q      +  T++ ++ AC  LAAL  G+ +H  + + G+ S
Sbjct: 830  GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSS 888

Query: 270  NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
             +  A++L+DMY KCG +V A  +F  I EK+++ W  MISG   H    E +  F+KM+
Sbjct: 889  ELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMR 948

Query: 330  QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             AG+ P+E T+ S+L ACSH G++ +G  +F+ M+ + N+ P + HY+CM+D+L R G +
Sbjct: 949  IAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNL 1008

Query: 390  HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
             +AY+LI  MP    A++WG+LL  CR + ++ELAE  A+ +F +EPDNAG ++LL+NIY
Sbjct: 1009 SKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIY 1068

Query: 450  AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLV 501
            A   +WEEV + R+ I    +KK    SW+E++GK          HP+   I+S L  L 
Sbjct: 1069 AEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLR 1128

Query: 502  EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
             +MK  G+ P+  + L +  D  K+  L  HSEKLA+ FG++ L  G  IR+ KNLR+C 
Sbjct: 1129 IKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCD 1188

Query: 562  DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH   KF S+   RE I+RD NRFHHF +G CSC DFW
Sbjct: 1189 DCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 193/383 (50%), Gaps = 4/383 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+   + LQ CA  +    GK+ H+ I   G+  + +    L+  Y  CG +   R++F
Sbjct: 450 DLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIF 509

Query: 92  DE-MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           D  +    +  WN ++  Y   G  +E++ LF  M + G T  S +T S +L   A    
Sbjct: 510 DHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNS-YTFSCILKCFATLGR 568

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           V ECK++H    K        V  +L+  Y K G +  A ++F+ + +R+ V+W+SM++G
Sbjct: 569 VGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISG 628

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            V N     AL  F +  +L +  +  T+ + + ACA + +L  G+ +H    K  F   
Sbjct: 629 CVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSRE 688

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   ++L+DMY+KCG + DA   F  + +K VV W ++I+ + R     + + LF +M+ 
Sbjct: 689 VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES 748

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ P+  +  SVL AC+    ++KG+   +  ++++N+   +   + ++D+  + G + 
Sbjct: 749 KGVSPDVYSMTSVLHACACGNSLDKGRDVHNY-IRKNNMALCLPVSNALMDMYAKCGSME 807

Query: 391 EAYDLILNMPFDATASMWGSLLA 413
           EAY +   +P     S W +++ 
Sbjct: 808 EAYLVFSQIPVKDIVS-WNTMIG 829


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/542 (40%), Positives = 337/542 (62%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D  + NI++  Y     +  AR  FD+MP +   SWNT+I  ++ NG   +A  LF+ M 
Sbjct: 67  DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMP 126

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++     +++       D+   KQL     + A  R+V   TA++  + K G I
Sbjct: 127 VRNSVSWN-----AMISGYVESGDLDLAKQL----FEVAPVRSVVAWTAMITGFMKFGKI 177

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A + FE MP +N VTW++M+AG+++N   E  L LF+R    G   N  ++SSV+  C
Sbjct: 178 ELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGC 237

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + L+AL  GKQVH ++CK+    N+ A +SL+ MY KCG + DA+ +F  + +K+VV WN
Sbjct: 238 SNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWN 297

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MISG+++H    + + LF+KM+  G+ P+  T+++VLSAC+H G V+ G  YF+ MV+ 
Sbjct: 298 AMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRD 357

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + V     HY+C++D+LGR G + EA DLI  MPF   ++++G+LL +CR ++NLELAE 
Sbjct: 358 YGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEF 417

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AAK L  ++P++A  ++ L+N+YAA  RW+ VA  R+ ++D++V K    SW+E+K    
Sbjct: 418 AAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVH 477

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G R HP +A I+ KL +L  +M+  GY P+ E+ LHDV + +K+++L+ HSEKLA+
Sbjct: 478 EFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAI 537

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            +GL+ +  G PIR+ KNLR+CGDCHS  K+ S I GR  IVRD  RFHHF  G CSC D
Sbjct: 538 AYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGD 597

Query: 599 FW 600
           +W
Sbjct: 598 YW 599



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+L + L  C+   A   GK  H  I    ++ +      L++ Y KCG +  A K+F  
Sbjct: 228 SSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLV 287

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC--AAKRDV 151
           MPQ+ +V+WN +I  Y  +G  ++A+ LF  M  EG  P    T  +VL AC  A   D+
Sbjct: 288 MPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKP-DWITFVAVLSACNHAGFVDL 346

Query: 152 ---FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
              +    +  + ++A  D      T ++D+  + G + +A  + + MP
Sbjct: 347 GIEYFNSMVRDYGVEAKPDHY----TCVVDLLGRGGKLVEAVDLIKKMP 391



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM-ILFEK 327
           SN+ +++ ++  + + G +  A  VF  +  K  V WN+M++G+S     ++V   LF++
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           + +    P+  +Y  +L+   H   VE  + +FD M      + +   ++ MI    + G
Sbjct: 63  IPE----PDIFSYNIMLACYLHNADVESARLFFDQM-----PVKDTASWNTMISGFSQNG 113

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           ++ +A +L L MP   + S W ++++      +L+L    AKQLF + P
Sbjct: 114 MMDQARELFLVMPVRNSVS-WNAMISGYVESGDLDL----AKQLFEVAP 157


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/550 (40%), Positives = 334/550 (60%), Gaps = 10/550 (1%)

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           +I  G   D    N ++  + KCG++  AR++FDEMP+R +VSWNTII      G   EA
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
             LF+NM  E     S FT + ++ A A    +   +QLH   LK  +  ++FV  AL+D
Sbjct: 61  FRLFLNMWEEFSDAGS-FTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALID 119

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+KCG I DA  VFE MPE+  V W++++AG+  +   EEAL ++   +  G++ + FT
Sbjct: 120 MYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFT 179

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
            S ++  CA LA++   KQ HA L + GFGS++ A ++LVD Y+K G + DA  VF  + 
Sbjct: 180 FSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMA 239

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            KNV+ WN +I G+  H R  E + LFE+M Q  ++PN  T+++VLSACSH G+ E+G  
Sbjct: 240 SKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWE 299

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            F  M + + + P   HY+CMI+++GR GL+ EA  LI   PF  TA+MW +LL +CR  
Sbjct: 300 IFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVN 359

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
            N EL + AA++L+GMEPD   N+++L NIY +    +E A     ++   ++     SW
Sbjct: 360 ENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSW 419

Query: 479 VEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           +E+K        G   HP+  EIY K++KL+ E+ K GY P  +  L DV D +++ + +
Sbjct: 420 IEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDV-DEQEERVRL 478

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           +HSEKLA+ FGL+      P++I++  RICGDCH  +K  +R+ GRE ++RD  RFHHF 
Sbjct: 479 YHSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFK 538

Query: 591 NGSCSCWDFW 600
           +G CSC D+W
Sbjct: 539 HGHCSCEDYW 548



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 1/196 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA  + MG+ +D   S  LI+ YSKCG I  AR VF+EMP++  V WNTII  Y  
Sbjct: 95  GRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYAL 154

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +G  +EA+ ++  M R+       FT S ++  CA    V   KQ H   ++     ++ 
Sbjct: 155 HGYSEEALDMYYEM-RDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIV 213

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
             TAL+D Y+K G I DA  VF+ M  +N ++W++++ G+  +    EA+ LF +     
Sbjct: 214 ANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQER 273

Query: 232 LEYNQFTISSVICACA 247
           +  N  T  +V+ AC+
Sbjct: 274 MNPNHITFLAVLSACS 289



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 1/112 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    ++ CAR  +    K  HA +I  G  +D + +  L++FYSK G I  AR VFD+M
Sbjct: 179 TFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKM 238

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
             + ++SWN +IG Y  +GR  EAV LF  M++E   P +  T  +VL AC+
Sbjct: 239 ASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNP-NHITFLAVLSACS 289


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/574 (41%), Positives = 352/574 (61%), Gaps = 8/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L + A     + G+  H+ I   G + +      L++ Y+KC  +  A +VFD+M
Sbjct: 247 TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 306

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN++I  +  N     AV +F ++LRE     +E +VSSVL ACA    +   
Sbjct: 307 PERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 366

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K  +    +V  +L+D+Y KC    +  ++F+ + +R+ VTW+ +V GFVQN
Sbjct: 367 RQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQN 426

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           + +EEA   F   +  G+  ++ + S+V+ + A LAAL QG  +H  + K G+  NM   
Sbjct: 427 DKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCIL 486

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            SL+ MYAKCG +VDAY VF GIE+ NV+ W  MIS +  H  + +V+ LFE M   G+ 
Sbjct: 487 GSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIE 546

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ VLSACSH G VE+G ++F+ M K H++ P   HY+CM+D+LGRAG + EA  
Sbjct: 547 PSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKR 606

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +MP   T S+WG+LL +CR Y NL++   AA++LF MEP N GN++LL+N+   + R
Sbjct: 607 FIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGR 666

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
            EE    R+L+  + V+KE   SW+++K          R+H    EIY  LEKL + +KK
Sbjct: 667 LEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKK 726

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY  ETE   + +E++ +++ L +HSEKLAL FGL+ L    PIRI KNLR CG CH+ 
Sbjct: 727 KGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTV 786

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MK AS+I  RE IVRD+NRFH F +G CSC D+W
Sbjct: 787 MKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 234/462 (50%), Gaps = 22/462 (4%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L   L +  + R+       H +II     +     N LIN Y+KCG ++ A  +F    
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204

Query: 96  Q--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              + IV+W ++I   +      +A++LF  M   G  P ++FT SS+L A AA   V  
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYP-NQFTFSSILSASAATMMVLH 263

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +QLH    K   D N+FVGTAL+D+YAKC  +  A RVF+ MPERN V+W+SM+ GF  
Sbjct: 264 GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFH 323

Query: 214 NELYEEALILF----RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           N LY+ A+ +F    R   V+    N+ ++SSV+ ACA +  L  G+QVH V+ K G   
Sbjct: 324 NNLYDRAVGVFKDVLREKTVIP---NEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVP 380

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
             +  +SL+DMY KC    +   +F  + +++VV WN ++ GF ++ +  E    F  M+
Sbjct: 381 LTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMR 440

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           + G+ P+E ++ +VL + + +  + +G +  D ++K    + N+     +I +  + G +
Sbjct: 441 REGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKL-GYVKNMCILGSLITMYAKCGSL 499

Query: 390 HEAYDLILNMPFDATASMWGSLLAS-----CRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
            +AY +   +  D     W +++++     C N + +EL E    +  G+EP +     +
Sbjct: 500 VDAYQVFEGIE-DHNVISWTAMISAYQLHGCAN-QVIELFEHMLSE--GIEPSHVTFVCV 555

Query: 445 LSNIYAANRRWEEVAR--ARKLIRDSEVKKEKSKSWVEIKGK 484
           LS      R  E +A   + K I D     E     V++ G+
Sbjct: 556 LSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGR 597


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 351/574 (61%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +CA  +A    +  HA  +  G +     S  +++ Y KCG +  ARKVFD M
Sbjct: 329 TLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGM 388

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSWN +I  Y  NG   EA+ALF  M+ EG    ++ +V + L AC     + E 
Sbjct: 389 QDRNSVSWNAMIKGYAENGDATEALALFKRMVGEG-VDVTDVSVLAALHACGELGFLDEG 447

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +++H   ++  ++ NV V  AL+ +Y KC     A++VF+ +  +  V+W++M+ G  QN
Sbjct: 448 RRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQN 507

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+A+ LF R Q+  ++ + FT+ S+I A A ++  +Q + +H    +     +++  
Sbjct: 508 GSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVL 567

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG V  A  +F+   +++V+ WN MI G+  H      + LFE+M+ +G  
Sbjct: 568 TALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKV 627

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PNE T++SVLSACSH G+V++G+ YF  M + + + P + HY  M+D+LGRAG +HEA+ 
Sbjct: 628 PNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWS 687

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +   S++G++L +C+ ++N+ELAE +A+++F +EP+    H+LL+NIYA    
Sbjct: 688 FIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASL 747

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++VAR R  +    ++K    S V++K        G  NH +  +IY++L KL+EE+K 
Sbjct: 748 WKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKA 807

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY P+T+  +HDVED  K +LL  HSEKLA+ +GL+   PG  I+I KNLR+C DCH+ 
Sbjct: 808 VGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNA 866

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S + GRE I+RD+ RFHHF +G CSC D+W
Sbjct: 867 TKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 205/391 (52%), Gaps = 2/391 (0%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           A + A+ +   L T  + L+ CA       G+  HA++   GL+ + L +  L N Y+KC
Sbjct: 214 AMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKC 273

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
                AR+VFD MP R  V+WN ++  Y  NG  + AV + + M  E        T+ SV
Sbjct: 274 RRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSV 333

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L ACA  + +  C+++H FA++   D  V V TA+LDVY KCG +  A +VF+ M +RN 
Sbjct: 334 LPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNS 393

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V+W++M+ G+ +N    EAL LF+R    G++    ++ + + AC  L  L +G++VH +
Sbjct: 394 VSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHEL 453

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           L + G  SN+   ++L+ MY KC     A  VF  +  K  V WN MI G +++  S + 
Sbjct: 454 LVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDA 513

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           + LF +MQ   + P+  T +S++ A + I    + +      ++ H +  +V+  + +ID
Sbjct: 514 VRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLH-LDQDVYVLTALID 572

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +  + G +  A  L  N   D     W +++
Sbjct: 573 MYAKCGRVSIARSL-FNSARDRHVITWNAMI 602


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 347/571 (60%), Gaps = 11/571 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +C   R    G+     I+G G+  +++    L++ Y K G  + A  VF  M  R +
Sbjct: 83  LSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDV 142

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W+ ++ +Y  NG  +EA+ LF  M  +G  P ++ T+ S L ACA+  D+     +H 
Sbjct: 143 VAWSAMVAAYARNGHPREALGLFRQMDLDGVAP-NKVTLVSGLDACASLGDLRSGALMHQ 201

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
                 +   V VGTAL+++Y KCG I  A+  F  + E+N V WS++ A + +N+   +
Sbjct: 202 RVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRD 261

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG--SNMFAASSL 277
           A+ +  R  + GL  N  T  SV+ ACA +AAL QG+++H  +   G G  S+++  ++L
Sbjct: 262 AIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTAL 321

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           V+MY+KCG +  A  +F  I   ++VLWN++I+  ++H ++ + + LFE+M+  GL P  
Sbjct: 322 VNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTI 381

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+ SVL ACSH GM+++G+ +F   +  H + P   H+ CM+D+LGRAG I ++ DL+L
Sbjct: 382 ITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLL 441

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +MPF+     W + L +CR YRN++ A  AA+ LF ++P     ++LLSN+YA   RW +
Sbjct: 442 HMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSD 501

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           VAR R+ ++     KE  +SW+E+K        G  +HPRI EI+++L++L + MK  GY
Sbjct: 502 VARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGY 561

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+TE  LHDV+   K+ ++ +HSEKLA+ F L+    G PIR++KNLR+C DCH+  KF
Sbjct: 562 VPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKF 621

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++  RE +VRD NRFH F NG+CSC D+W
Sbjct: 622 ISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 194/383 (50%), Gaps = 15/383 (3%)

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           +G   +    N+LI+ Y+KC     A  VF  +  + + SW  ++ ++  N         
Sbjct: 4   LGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLF 63

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  ML +G  P  E  +S  L AC   R++   + + +  L   ++    V TAL+ +Y 
Sbjct: 64  FRGMLLQGINP-GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           K G  +DA+ VF  M  R+ V WS+MVA + +N    EAL LFR+  + G+  N+ T+ S
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            + ACA L  L  G  +H  +   G  S +   ++LV++Y KCG +  A   F  I EKN
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV W+ + + ++R+ R+ + + +  +M   GL PN  T++SVL AC+ I  +++G+   +
Sbjct: 243 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 362 -LMVKQHNVLPNVFHYSCMIDILGRAG---LIHEAYDLILNMPFDATASMWGSLLASCRN 417
            + V    +  +V+  + ++++  + G   L    +D I ++       +W SL+A+   
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDL----VLWNSLIATNAQ 358

Query: 418 Y----RNLELAEIAAKQLFGMEP 436
           +    + LEL E    +L G++P
Sbjct: 359 HGQTEKALELFE--RMRLEGLQP 379



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 138/259 (53%), Gaps = 4/259 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +CA       G + H ++   G+ +  +    L+N Y KCG I  A + F ++
Sbjct: 179 TLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI 238

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +V+W+ I  +Y  N R ++A+ +   M  EG  P S  T  SVL ACAA   + + 
Sbjct: 239 VEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNST-TFVSVLDACAAIAALKQG 297

Query: 155 KQLH--VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           +++H  +  L   ++ +V+V TAL+++Y+KCG ++ A  +F+ +   + V W+S++A   
Sbjct: 298 RRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNA 357

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNM 271
           Q+   E+AL LF R ++ GL+    T +SV+ AC+    L QG K   + +   G     
Sbjct: 358 QHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEA 417

Query: 272 FAASSLVDMYAKCGCVVDA 290
                +VD+  + G +VD+
Sbjct: 418 EHFGCMVDLLGRAGWIVDS 436


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 340/574 (59%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L+SC+R      G+   A  +  GL  D    + LI+ Y+ C  ++ A+ +FD +
Sbjct: 121 TVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAV 180

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN II +Y  NG   E V +F  ML  G   + E T+ SV+ AC    D    
Sbjct: 181 EENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVG-VAFDEITLVSVVTACGRIGDAKLG 239

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +  +  +  + RN  + TAL+D+YAKCG +  A R+F+ M  R+ V WS+M++G+ Q 
Sbjct: 240 KWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQA 299

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +   EAL LF   Q+  +E N  T+ SV+ ACA L AL  GK VH+ + +      +   
Sbjct: 300 DQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILG 359

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVD YAKCGC+ DA   F  +  KN   W  +I G + + R  E + LF  M++A + 
Sbjct: 360 TALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIE 419

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P + T+I VL ACSH  +VE+G+ +FD M + + + P   HY C++D+LGRAGLI EAY 
Sbjct: 420 PTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQ 479

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +  A +W +LL+SC  ++N+E+ E A KQ+  + P ++G+++LLSNIYA+  +
Sbjct: 480 FIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQ 539

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
           W+  A  RK ++D  ++K    S +E+ G          +HP++ EIY K+E++++ +K 
Sbjct: 540 WKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKM 599

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P T     +V++  K+  + HHSEKLA+ FGLM L PG  IR+ KNLR+C DCHS 
Sbjct: 600 AGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSA 659

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S++  RE +VRD NRFHHF +G+CSC D+W
Sbjct: 660 TKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 178/333 (53%), Gaps = 3/333 (0%)

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P      +N ++ +    G  ++A+ LF+ ML        + TV+  L +C+    +   
Sbjct: 79  PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +A+K  +  + FV ++L+ +YA C  ++ A  +F+++ E   V W++++  +++N
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKN 198

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             + E + +F+    +G+ +++ T+ SV+ AC  +     GK V   + + G   N    
Sbjct: 199 GNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLM 258

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG +  A  +F G++ ++VV W+ MISG+++  +  E + LF +MQ A + 
Sbjct: 259 TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVE 318

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T +SVLSAC+ +G +E GK +    +++  +   +   + ++D   + G I +A +
Sbjct: 319 PNDVTMVSVLSACAVLGALETGK-WVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVE 377

Query: 395 LILNMPFDATASMWGSLLAS-CRNYRNLELAEI 426
              +MP   + + W +L+     N R  E  E+
Sbjct: 378 AFESMPVKNSWT-WTALIKGMATNGRGREALEL 409


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/572 (41%), Positives = 348/572 (60%), Gaps = 10/572 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + LQSC   R+   G+  H +++  GL  DT+ +  L++ Y+ CGL+  AR++FD MP+R
Sbjct: 67  SVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKR 126

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +  WN +I +Y  +G  + A+ L+  M+  G  P   FT    L ACAA  D+   +++
Sbjct: 127 NVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEP-DNFTYPLALKACAALLDLETGREV 185

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   L      ++FV   L+D+YAKCG + DA  VF+ +  R+ V W+SM+A + QN   
Sbjct: 186 HERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRP 245

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EAL L R     G+     T+ S I A A  AAL +G+++H    + GF       +SL
Sbjct: 246 MEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSL 305

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPN 336
           VDMYAK G V  A  +F  + ++ +V WN MI G+  H    E + LF KM+ +A + P+
Sbjct: 306 VDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPD 365

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
             T++ VLSAC+H GMV++ K +F LMV  +++ P V H++C++D+LG AG   EAYDLI
Sbjct: 366 NITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLI 425

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
             MP    + +WG+LL  C+ ++N+EL E+A ++L  +EP++AGN++LLSNIYA + +WE
Sbjct: 426 KGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWE 485

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLG 508
           + AR RKL+ +  +KK    SW+E+KGK +        HPR AEIY +LE+L   M   G
Sbjct: 486 KAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAG 545

Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
           Y P+T    HDV D  K+ ++  HSE+LA+ FGL+    G  + + KNLR+C DCH  +K
Sbjct: 546 YMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIK 605

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             S+I  RE I+RD+NR+HHF NG CSC D+W
Sbjct: 606 LISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/574 (40%), Positives = 348/574 (60%), Gaps = 10/574 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
             + +++CA   +   GK  H   +  G+ ++    + L + YSKCG +  A KVF+EMP
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            +  VSW  +I  Y+  G  +EA+  F  M+ E  T   +  + S L AC A +     +
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT-IDQHVLCSTLGACGALKACKFGR 227

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFVQN 214
            +H   +K   + ++FVG AL D+Y+K G +  AS VF    E RN V+++ ++ G+V+ 
Sbjct: 228 SVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVET 287

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  E+ L +F   +  G+E N+FT SS+I ACA  AAL QG Q+HA + K  F  + F +
Sbjct: 288 EQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS 347

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S LVDMY KCG +  A   F  I +   + WN+++S F +H    + + +FE+M   G+ 
Sbjct: 348 SILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVK 407

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+IS+L+ CSH G+VE+G  YF  M K + V+P   HYSC+ID+LGRAG + EA +
Sbjct: 408 PNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKE 467

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MPF+  A  W S L +CR + + E+ ++AA++L  +EP N+G  +LLSNIYA  R+
Sbjct: 468 FINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQ 527

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKK 506
           WE+V   R  +RD  VKK    SWV++  K         +HPR + IY KL+ L++++K 
Sbjct: 528 WEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKA 587

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P T+    D++DS K++LL  HSE++A+ F L+ +  G PI + KNLR+C DCHS 
Sbjct: 588 AGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSA 647

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KF S++ GR+ IVRD +RFHHFT+GSCSC D+W
Sbjct: 648 IKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/384 (34%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + + L   +Q+ A+ +   RGK  HA +I  G    T  +N L+N YSKCG +  A K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D MPQR +VSW  +I   + N +  EA+  F  M   G+ P ++F  SS + ACA+   +
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVP-TQFAFSSAIRACASLGSI 122

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              KQ+H  ALK  +   +FVG+ L D+Y+KCG + DA +VFE MP ++EV+W++M+ G+
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            +   +EEAL+ F++     +  +Q  + S + AC  L A   G+ VH+ + K GF S++
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 242

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           F  ++L DMY+K G +  A  VF GI+   +NVV +  +I G+    +  + + +F +++
Sbjct: 243 FVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           + G+ PNE T+ S++ AC++   +E+G +     V + N   + F  S ++D+ G+ GL+
Sbjct: 302 RQGIEPNEFTFSSLIKACANQAALEQG-TQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 390 HEAYDLILNMPFDATASMWGSLLA 413
            +A      +  D T   W SL++
Sbjct: 361 EQAIQAFDEIG-DPTEIAWNSLVS 383



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + +++CA + A  +G   HA+++ +  + D   S+IL++ Y KCGL+  A + FDE+
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 370

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                ++WN+++  +  +G  ++A+ +F  M+  G  P +  T  S+L  C+    V E 
Sbjct: 371 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP-NAITFISLLTGCSHAGLVEE- 428

Query: 155 KQLHVFALKAAMDRN--VFVG----TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
             L  F    +MD+   V  G    + ++D+  + G + +A      MP E N   W S 
Sbjct: 429 -GLDYF---YSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 484

Query: 208 VA 209
           + 
Sbjct: 485 LG 486


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/590 (40%), Positives = 348/590 (58%), Gaps = 15/590 (2%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           A+ +   N  + +  T    ++ C    A  + ++ H  +   G    T   N LIN Y 
Sbjct: 3   AMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYV 62

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
           K GL+  AR +FDEMP R +VSW T+I +Y+ +    +A+   I MLREG  P + +T S
Sbjct: 63  KFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRP-NMYTYS 121

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           SVL AC     +   +QLH   LK  ++ +VFV +AL+D Y+K G   DA  VF  M   
Sbjct: 122 SVLRACDG---LLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITG 178

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V W+S++ GF QN   +E L L++R +      +Q T++SV+ AC GLA L  G+QVH
Sbjct: 179 DLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVH 238

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARS 318
             + K  +  ++   ++L+DMY KCG + DA  +F+ +  EK+V+ W+TMI+G +++  S
Sbjct: 239 VHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFS 296

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            + + LFE M+  G  PN  T + VL ACSH G+V  G  YF  M +   + P   HY C
Sbjct: 297 ADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGC 356

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           +ID+LGRAG + EA  LI  M  +  A  W  LL +CR ++N++LA  AAK++  ++P +
Sbjct: 357 IIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPAD 416

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRI 490
           AG ++LLSNIYA +++WE+VA  R+ +R   VKK+   SW+E+         G  +HPRI
Sbjct: 417 AGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRI 476

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
            EI  +L +L++ + +LGY P+T   L D+E  + ++ L +HSEKLA+ FGLM L     
Sbjct: 477 EEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKT 536

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I I KNLRICGDCH F K  S++  R  ++RD  R+HHF  G CSC D+W
Sbjct: 537 IHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/574 (41%), Positives = 352/574 (61%), Gaps = 8/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L + A     + G+  H+ I   G + +      L++ Y+KC  +  A +VFD+M
Sbjct: 12  TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 71

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN++I  +  N     AV +F ++LRE     +E +VSSVL ACA    +   
Sbjct: 72  PERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 131

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K  +    +V  +L+D+Y KC    +  ++F+ + +R+ VTW+ +V GFVQN
Sbjct: 132 RQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQN 191

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           + +EEA   F   +  G+  ++ + S+V+ + A LAAL QG  +H  + K G+  NM   
Sbjct: 192 DKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCIL 251

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            SL+ MYAKCG +VDAY VF GIE+ NV+ W  MIS +  H  + +V+ LFE M   G+ 
Sbjct: 252 GSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIE 311

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ VLSACSH G VE+G ++F+ M K H++ P   HY+CM+D+LGRAG + EA  
Sbjct: 312 PSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKR 371

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +MP   T S+WG+LL +CR Y NL++   AA++LF MEP N GN++LL+N+   + R
Sbjct: 372 FIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGR 431

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
            EE    R+L+  + V+KE   SW+++K          R+H    EIY  LEKL + +KK
Sbjct: 432 LEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKK 491

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY  ETE   + +E++ +++ L +HSEKLAL FGL+ L    PIRI KNLR CG CH+ 
Sbjct: 492 KGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTV 551

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MK AS+I  RE IVRD+NRFH F +G CSC D+W
Sbjct: 552 MKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 193/365 (52%), Gaps = 20/365 (5%)

Query: 132 PY-SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
           PY ++FT SS+L A AA   V   +QLH    K   D N+FVGTAL+D+YAKC  +  A 
Sbjct: 6   PYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAV 65

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILF----RRAQVLGLEYNQFTISSVICAC 246
           RVF+ MPERN V+W+SM+ GF  N LY+ A+ +F    R   V+    N+ ++SSV+ AC
Sbjct: 66  RVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIP---NEVSVSSVLSAC 122

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +  L  G+QVH V+ K G     +  +SL+DMY KC    +   +F  + +++VV WN
Sbjct: 123 ANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWN 182

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            ++ GF ++ +  E    F  M++ G+ P+E ++ +VL + + +  + +G +  D ++K 
Sbjct: 183 VLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKL 242

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-----CRNYRNL 421
              + N+     +I +  + G + +AY +   +  D     W +++++     C N + +
Sbjct: 243 -GYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQLHGCAN-QVI 299

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR--ARKLIRDSEVKKEKSKSWV 479
           EL E    +  G+EP +     +LS      R  E +A   + K I D     E     V
Sbjct: 300 ELFEHMLSE--GIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMV 357

Query: 480 EIKGK 484
           ++ G+
Sbjct: 358 DLLGR 362



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ++    L S A   A  +G   H +II +G   +      LI  Y+KCG +  A +VF+ 
Sbjct: 214 ASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEG 273

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +    ++SW  +I +Y  +G   + + LF +ML EG  P S  T   VL AC+    V E
Sbjct: 274 IEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEP-SHVTFVCVLSACSHTGRVEE 332

Query: 154 CKQLHVFALKAAMDRNVFVG--TALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVA 209
               H  ++K   D N        ++D+  + G + +A R  ESMP +     W +++ 
Sbjct: 333 -GLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLG 390



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M+ +G +PN+ T+ S+LSA +   MV  G+    L + +H    N+F  + ++D+  +  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSL-IHKHGFDANIFVGTALVDMYAKCA 59

Query: 388 LIHEAYDLILNMPFDATASMWGSLL 412
            +H A  +   MP     S W S++
Sbjct: 60  DMHSAVRVFDQMPERNLVS-WNSMI 83


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/576 (41%), Positives = 331/576 (57%), Gaps = 11/576 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++ A  R PV GK  HA  +  G   D        + Y K  L   ARK+FDE+
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R + +WN  I +  T+GR +EA+  FI   R    P S  T  + L AC+    +   
Sbjct: 170 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNS-ITFCAFLNACSDWLHLNLG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            QLH   L++  D +V V   L+D Y KC  I  +  +F  M  +N V+W S+VA +VQN
Sbjct: 229 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+A +L+ R++   +E + F ISSV+ ACAG+A L  G+ +HA   K      +F  
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAG 332
           S+LVDMY KCGC+ D+   F  + EKN+V  N++I G++   +    + LFE+M  +  G
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCG 408

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             PN  T++S+LSACS  G VE G   FD M   + + P   HYSC++D+LGRAG++  A
Sbjct: 409 PTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERA 468

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y+ I  MP   T S+WG+L  +CR +   +L  +AA+ LF ++P ++GNH+LLSN +AA 
Sbjct: 469 YEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAA 528

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            RW E    R+ ++   +KK    SW+ +K +        R+H    EI + L KL  EM
Sbjct: 529 GRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEM 588

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           +  GYKP+ +  L+D+E+  K   + HHSEKLAL FGL+ L   VPIRI KNLRICGDCH
Sbjct: 589 EAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCH 648

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           SF KF S    RE IVRD NRFH F +G CSC D+W
Sbjct: 649 SFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 176/350 (50%), Gaps = 3/350 (0%)

Query: 52  GKVCHAKII-GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+V HA+I+  +        +N LIN YSK      AR V    P R +VSW ++I    
Sbjct: 25  GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLA 84

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NG    A+  F  M REG  P ++FT      A A+ R     KQ+H  A+K     +V
Sbjct: 85  QNGHFSTALVEFFEMRREGVVP-NDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDV 143

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FVG +  D+Y K  L  DA ++F+ +PERN  TW++ ++  V +    EA+  F   + +
Sbjct: 144 FVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRI 203

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
               N  T  + + AC+    L  G Q+H ++ ++GF +++   + L+D Y KC  +  +
Sbjct: 204 DGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSS 263

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F+ +  KN V W ++++ + ++    +  +L+ + ++  +  ++    SVLSAC+ +
Sbjct: 264 EIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGM 323

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
             +E G+S     VK   V   +F  S ++D+ G+ G I ++      MP
Sbjct: 324 AGLELGRSIHAHAVKA-CVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 372


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/574 (40%), Positives = 348/574 (60%), Gaps = 10/574 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
             + +++CA   +   GK  H   +  G+ ++    + L + YSKCG +  A KVF+EMP
Sbjct: 44  FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 103

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            +  VSW  +I  Y+  G  +EA+  F  M+ E  T   +  + S L AC A +     +
Sbjct: 104 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT-IDQHVLCSTLGACGALKACKFGR 162

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFVQN 214
            +H   +K   + ++FVG AL D+Y+K G +  AS VF    E RN V+++ ++ G+V+ 
Sbjct: 163 SVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVET 222

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  E+ L +F   +  G+E N+FT SS+I ACA  AAL QG Q+HA + K  F  + F +
Sbjct: 223 EQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS 282

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S LVDMY KCG +  A   F  I +   + WN+++S F +H    + + +FE+M   G+ 
Sbjct: 283 SILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVK 342

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+IS+L+ CSH G+VE+G  YF  M K + V+P   HYSC+ID+LGRAG + EA +
Sbjct: 343 PNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKE 402

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MPF+  A  W S L +CR + + E+ ++AA++L  +EP N+G  +LLSNIYA  R+
Sbjct: 403 FINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQ 462

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKK 506
           WE+V   R  +RD  VKK    SWV++  K         +HPR + IY KL+ L++++K 
Sbjct: 463 WEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKA 522

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P T+    D++DS K++LL  HSE++A+ F L+ +  G PI + KNLR+C DCHS 
Sbjct: 523 AGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSA 582

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KF S++ GR+ IVRD +RFHHFT+GSCSC D+W
Sbjct: 583 IKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 185/322 (57%), Gaps = 6/322 (1%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MPQR +VSW  +I   + N +  EA+  F  M   G+ P ++F  SS + ACA+   +  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVP-TQFAFSSAIRACASLGSIEM 59

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H  ALK  +   +FVG+ L D+Y+KCG + DA +VFE MP ++EV+W++M+ G+ +
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
              +EEAL+ F++     +  +Q  + S + AC  L A   G+ VH+ + K GF S++F 
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            ++L DMY+K G +  A  VF GI+   +NVV +  +I G+    +  + + +F ++++ 
Sbjct: 180 GNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 238

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ PNE T+ S++ AC++   +E+G +     V + N   + F  S ++D+ G+ GL+ +
Sbjct: 239 GIEPNEFTFSSLIKACANQAALEQG-TQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 297

Query: 392 AYDLILNMPFDATASMWGSLLA 413
           A      +  D T   W SL++
Sbjct: 298 AIQAFDEIG-DPTEIAWNSLVS 318



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + +++CA + A  +G   HA+++ +  + D   S+IL++ Y KCGL+  A + FDE+
Sbjct: 246 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                ++WN+++  +  +G  ++A+ +F  M+  G  P +  T  S+L  C+    V E 
Sbjct: 306 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP-NAITFISLLTGCSHAGLVEE- 363

Query: 155 KQLHVFALKAAMDRN--VFVG----TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
             L  F    +MD+   V  G    + ++D+  + G + +A      MP E N   W S 
Sbjct: 364 -GLDYF---YSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 419

Query: 208 VA 209
           + 
Sbjct: 420 LG 421


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/576 (41%), Positives = 331/576 (57%), Gaps = 11/576 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++ A  R PV GK  HA  +  G   D        + Y K  L   ARK+FDE+
Sbjct: 60  TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 119

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R + +WN  I +  T+GR +EA+  FI   R    P S  T  + L AC+    +   
Sbjct: 120 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNS-ITFCAFLNACSDWLHLNLG 178

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            QLH   L++  D +V V   L+D Y KC  I  +  +F  M  +N V+W S+VA +VQN
Sbjct: 179 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 238

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+A +L+ R++   +E + F ISSV+ ACAG+A L  G+ +HA   K      +F  
Sbjct: 239 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 298

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAG 332
           S+LVDMY KCGC+ D+   F  + EKN+V  N++I G++   +    + LFE+M  +  G
Sbjct: 299 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCG 358

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             PN  T++S+LSACS  G VE G   FD M   + + P   HYSC++D+LGRAG++  A
Sbjct: 359 PTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERA 418

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y+ I  MP   T S+WG+L  +CR +   +L  +AA+ LF ++P ++GNH+LLSN +AA 
Sbjct: 419 YEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAA 478

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            RW E    R+ ++   +KK    SW+ +K +        R+H    EI + L KL  EM
Sbjct: 479 GRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEM 538

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           +  GYKP+ +  L+D+E+  K   + HHSEKLAL FGL+ L   VPIRI KNLRICGDCH
Sbjct: 539 EAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCH 598

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           SF KF S    RE IVRD NRFH F +G CSC D+W
Sbjct: 599 SFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 634



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 2/323 (0%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           YSK      AR V    P R +VSW ++I     NG    A+  F  M REG  P ++FT
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVP-NDFT 60

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
                 A A+ R     KQ+H  A+K     +VFVG +  D+Y K  L  DA ++F+ +P
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           ERN  TW++ ++  V +    EA+  F   + +    N  T  + + AC+    L  G Q
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           +H ++ ++GF +++   + L+D Y KC  +  +  +F+ +  KN V W ++++ + ++  
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             +  +L+ + ++  +  ++    SVLSAC+ +  +E G+S     VK   V   +F  S
Sbjct: 241 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKA-CVERTIFVGS 299

Query: 378 CMIDILGRAGLIHEAYDLILNMP 400
            ++D+ G+ G I ++      MP
Sbjct: 300 ALVDMYGKCGCIEDSEQAFDEMP 322



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 111/244 (45%), Gaps = 18/244 (7%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+K      A  V    P RN V+W+S+++G  QN  +  AL+ F   +  G+  N FT
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
                 A A L   + GKQ+HA+  K G   ++F   S  DMY K     DA  +F  I 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS-----HIGMV 353
           E+N+  WN  IS      R  E +  F + ++   HPN  T+ + L+ACS     ++GM 
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 354 EKG---KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
             G   +S FD  V   N L         ID  G+   I  + ++I        A  W S
Sbjct: 181 LHGLVLRSGFDTDVSVCNGL---------IDFYGKCKQIRSS-EIIFTEMGTKNAVSWCS 230

Query: 411 LLAS 414
           L+A+
Sbjct: 231 LVAA 234


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 351/574 (61%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C    A   GK  H  ++      D      L++ Y+K G  +   +VF+EM
Sbjct: 144 TFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEM 203

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  ++ W+ +I  Y  + + +EAV LF  M R    P ++FT +SVL +CA+  ++   
Sbjct: 204 PKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP-NQFTFASVLQSCASIENLQLG 262

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   LK  +D NVFV  AL+DVYAKCG + ++ ++F  +P RNEVTW++M+ G+VQ+
Sbjct: 263 KQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQS 322

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              ++AL L++      ++ ++ T SSV+ ACA LAA+  G Q+H++  KT +  ++   
Sbjct: 323 GDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVG 382

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG + +A  VF  + E++ + WN MISG+S H    E +  F+ MQ+    
Sbjct: 383 NALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECV 442

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++S+LSACS+ G+++ G++YF  MV+ + + P + HY+CM+ +LGR+G + +A  
Sbjct: 443 PNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVK 502

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI  +P +    +W +LL +C  + +++L  ++A+Q+  ++P +   H+LLSNIYA  RR
Sbjct: 503 LIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRR 562

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W  VA  RK +++  VKKE   SW+E +        G  +HP +  I   LE L  + +K
Sbjct: 563 WNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEK 622

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L DVED  K+  L  HSE+LAL FGL+       IRI+KNLRIC DCHS 
Sbjct: 623 AGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSA 682

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  R+ I+RD+NRFHHF +G CSC D+W
Sbjct: 683 IKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 195/361 (54%), Gaps = 9/361 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA I  +G  ++      LI+ Y+ CG ++ AR+ FD +  + +VSW  ++  Y  N R 
Sbjct: 64  HACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRF 123

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           Q+++ LF  M   G  P + FT + VL AC         K +H   LK   + +++VG  
Sbjct: 124 QDSLQLFAEMRMVGFNP-NHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF---RRAQVLGL 232
           LLD+Y K G  +D  RVFE MP+ + + WS M++ + Q+    EA+ LF   RRA VL  
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP- 241

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             NQFT +SV+ +CA +  L  GKQVH  + K G   N+F +++L+D+YAKCG + ++  
Sbjct: 242 --NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F  +  +N V WNTMI G+ +     + + L++ M +  +  +E TY SVL AC+ +  
Sbjct: 300 LFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA 359

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +E G     L +K      +V   + +ID+  + G I  A  L+ +M  +     W +++
Sbjct: 360 MELGTQIHSLSLKT-IYDKDVVVGNALIDMYAKCGSIKNAR-LVFDMLSERDEISWNAMI 417

Query: 413 A 413
           +
Sbjct: 418 S 418



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 172/313 (54%), Gaps = 14/313 (4%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK--TPYSEFTVSSVLCACAAKRDV 151
           MP R  VS+ T+I  Y  + +  E V LF  + REG    P+   T+  +L +       
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVS------- 53

Query: 152 FECKQL----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
            EC +L    H    K   + N FVGTAL+D YA CG ++ A + F+++  ++ V+W+ M
Sbjct: 54  VECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGM 113

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           VA + +N+ ++++L LF   +++G   N FT + V+ AC GL A   GK VH  + KT +
Sbjct: 114 VACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCY 173

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             +++    L+D+Y K G   D   VF  + + +V+ W+ MIS +++  +S E + LF +
Sbjct: 174 EMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQ 233

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M++A + PN+ T+ SVL +C+ I  ++ GK     ++K   +  NVF  + ++D+  + G
Sbjct: 234 MRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKV-GLDGNVFVSNALMDVYAKCG 292

Query: 388 LIHEAYDLILNMP 400
            +  +  L + +P
Sbjct: 293 RLDNSMKLFMELP 305


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 345/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C R      G   H+ ++  G N+D      L++ YS  G ++ A KVF+E+
Sbjct: 113 TFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEI 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +V+W  +   YTT G+ +EA+ LF  M+  G  P S F V  VL AC    D+   
Sbjct: 173 PERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQ-VLSACVHVGDLDSG 231

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +     +  M +N FV T L+++YAKCG +  A  VF+SM E++ VTWS+M+ G+  N
Sbjct: 232 EWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASN 291

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E +  F +     L+ +QF+I   + +CA L AL  G+   +++ +  F +N+F A
Sbjct: 292 SFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMA 351

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG +   + VF  ++EK++V+ N  ISG +++        +F + ++ G+ 
Sbjct: 352 NALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGIS 411

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ +L  C H G+++ G  +F+ +   + +   V HY CM+D+ GRAG++ +AY 
Sbjct: 412 PDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYR 471

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI +MP    A +WG+LL+ CR  ++ +LAE   K+L  +EP NAGN++ LSNIY+ + R
Sbjct: 472 LICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGR 531

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
           W+E A  R ++    +KK    SW+E++G         ++HP   +IY+KLE L  EM+ 
Sbjct: 532 WDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRL 591

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +G+ P TE    DVED  K+ +L HHSEKLA+ FGL+    G  IR++KNLR+CGDCH  
Sbjct: 592 MGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEV 651

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MK  S+I  RE +VRD NRFH FTNGSCSC D+W
Sbjct: 652 MKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 196/391 (50%), Gaps = 9/391 (2%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILIN---FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           K  H  +I   L++DT   N+L+    F+ +      +  +F       I  +NT+I  +
Sbjct: 30  KQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHY---SFLLFSHTQFPNIFLYNTLINGF 86

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             N    E + LF+++ + G   +  FT   VL AC    +      LH   +K   + +
Sbjct: 87  VNNHLFHETLDLFLSIRKHGLNLHG-FTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHD 145

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           V   T+LL +Y+  G ++DA +VFE +PER+ VTW+++ +G+     + EA+ LF++   
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVE 205

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           +G+  + + I  V+ AC  +  L  G+ +   + +     N F  ++LV++YAKCG +  
Sbjct: 206 MGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEK 265

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF  + EK++V W+TMI G++ ++   E +  F +M Q  L P++ + +  LS+C+ 
Sbjct: 266 ARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCAS 325

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
           +G ++ G+    L + +H  L N+F  + +ID+  + G +   +++   M       M  
Sbjct: 326 LGALDLGEWGISL-IDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384

Query: 410 SLLASCRN-YRNLELAEIAAKQLFGMEPDNA 439
           ++    +N +  L  A     +  G+ PD +
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 355/574 (61%), Gaps = 11/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +C        GK  H+ +I  GL +D      L++ Y+K   +  +RK+F+ M
Sbjct: 250 TLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTM 309

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               ++SW  +I  Y  + +EQEA+ LF NML    TP + FT SSVL ACA+  D    
Sbjct: 310 LHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTP-NCFTFSSVLKACASLPDFGIG 368

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQLH   +K  +     VG +L+++YA+ G +  A + F  + E+N +++++      + 
Sbjct: 369 KQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKA 428

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E+       +  G+  + FT + ++   A +  +++G+Q+HA++ K+GFG+N+   
Sbjct: 429 LDSDESF--NHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCIN 486

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ MY+KCG    A  VF+ +  +NV+ W ++ISGF++H  + + + LF +M + G+ 
Sbjct: 487 NALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVK 546

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PNE TYI+VLSACSH+G++++   +F+ M   H++ P + HY+CM+D+LGR+GL+ EA +
Sbjct: 547 PNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIE 606

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +MPFDA A +W + L SCR +RN +L E AAK++   EP +   ++LLSN+YA+  R
Sbjct: 607 FINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGR 666

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++VA  RK ++  ++ KE   SW+E+         G  +HP+  +IY +L++L  ++K 
Sbjct: 667 WDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKN 726

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P T+  LHDVED +K++ L  HSEK+A+ + L+      PIR+ KNLR+CGDCH+ 
Sbjct: 727 LGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTA 786

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K+ S + GRE +VRD NRFHH  +G CSC D+W
Sbjct: 787 IKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 178/334 (53%), Gaps = 10/334 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QR 97
           L++C R      GK+ H K+I  GL  D++  N LI  YSKCG    A  +F  M   +R
Sbjct: 46  LKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY--SEFTVSSVLCACAAKRDVFECK 155
            +VSW+ II  +  N  E  A+  F++ML+  +     +E+  +++L +C+    +F   
Sbjct: 106 DLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCS--NPLFFTT 163

Query: 156 QLHVFAL---KAAMDRNVFVGTALLDVYAKCGL-ISDASRVFESMPERNEVTWSSMVAGF 211
            L +FA        D +V VG AL+D++ K GL I  A  VF+ M  +N VTW+ M+  +
Sbjct: 164 GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRY 223

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            Q  L ++A+ LF R  V     ++FT++S++ AC  L     GKQ+H+ + ++G  S++
Sbjct: 224 SQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDV 283

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F   +LVDMYAK   V ++  +F+ +   NV+ W  +ISG+ +  +  E + LF  M   
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            + PN  T+ SVL AC+ +     GK      +K
Sbjct: 344 HVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIK 377



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS--GI 297
           S ++ AC     L  GK +H  L  +G   +    +SL+ +Y+KCG   +A  +F   G 
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGH 102

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG---LHPNEQTYISVLSACSHIGMVE 354
            ++++V W+ +IS F+ ++     ++ F  M Q     ++PNE  + ++L +CS+     
Sbjct: 103 HKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFT 162

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
            G + F  ++K      +V     +ID+  + GL
Sbjct: 163 TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGL 196


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/515 (42%), Positives = 327/515 (63%), Gaps = 40/515 (7%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M+ +G  P ++FT+S+V+ ACA+   + + KQ H + +K   + +V V TAL+ +YA+CG
Sbjct: 1   MVGKGVKP-NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCG 59

Query: 185 LISDASRVFESMPERNEVTWSSMV-------------------------------AGFVQ 213
            + DA  VF+ M ER+  TW++M+                               AG+ Q
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   +E+L +F + +  G++ ++F + SV+ ACA LAAL  G+Q HA + ++GF  ++  
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            S+LVDMYAK G + DA  VF  + ++N V WN++I+G ++H R  + ++LFE+M QAG+
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PNE +++ VLSACSH G+V +G+ YF+LM + + ++P+V HY+CMID+LGRAG + EA 
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           + I  MP +   S+WG+LL +CR + N ELA+  A+ L GME   AG ++LLSNIYAA  
Sbjct: 300 NFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           +W++ A+ RKL++D  V K+   SW+E+K        G+ +HP++ EI+  LE L  +MK
Sbjct: 360 QWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMK 419

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             GY P     L DVED  K+  L HHSEKLA+ FG++   PG  IR+ KNLR+CGDCH+
Sbjct: 420 AAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHT 479

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF S    R+ +VRD NRFHHF +G CSC D+W
Sbjct: 480 VIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 170/338 (50%), Gaps = 39/338 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           TL   +++CA   +  +GK  H  II MG  +D +    L++ Y++CG +  A  VFD  
Sbjct: 12  TLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKM 71

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        EM +R +VSW  +I  Y  NG   E++ +F 
Sbjct: 72  SERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVF- 130

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           N +R+       F + SVL ACA    +   +Q H + +++    ++ VG+AL+D+YAK 
Sbjct: 131 NQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKS 190

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA +VF+ MP+RNEV+W+S++ G  Q+    +A++LF +    G++ N+ +   V+
Sbjct: 191 GSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVL 250

Query: 244 CACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKN 301
            AC+    + +G+    ++ +  G   ++   + ++D+  + GC+ +A    +G+  E +
Sbjct: 251 SACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPD 310

Query: 302 VVLWNTM-----ISGFSRHARSVEVMILFEKMQQAGLH 334
           V +W  +     I G +  A+ +   +L  ++Q AG++
Sbjct: 311 VSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIY 348



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 144/314 (45%), Gaps = 43/314 (13%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           + + L +CA   A   G+  HA ++  G   D +  + L++ Y+K G +  A +VFD+MP
Sbjct: 145 MGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMP 204

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           QR  VSWN+II     +GR  +AV LF  ML+ G  P +E +   VL AC+    V E +
Sbjct: 205 QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKP-NEISFVGVLSACSHTGLVNEGR 263

Query: 156 Q-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVAGFVQ 213
              ++      +  +V   T ++D+  + G + +A      MP   +V+ W +++     
Sbjct: 264 GYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGAC-- 321

Query: 214 NELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
             ++    +  R A+ +LG+E             AG+  L+               SN++
Sbjct: 322 -RIHGNTELAKRIAEHLLGMEVQ----------IAGIYVLL---------------SNIY 355

Query: 273 AASSLVDMYAKCGCVVDAYFV-----FSGIEEKNVVLWNTMISGFSRHARSVEVMILFE- 326
           AA+   D  AK   ++    V     +S IE K ++  +  ++G + H +  E+    E 
Sbjct: 356 AAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIM--HAFVAGETSHPQLKEIHEFLES 413

Query: 327 ---KMQQAGLHPNE 337
              KM+ AG  PN+
Sbjct: 414 LSRKMKAAGYVPNK 427


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/576 (40%), Positives = 330/576 (57%), Gaps = 11/576 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++ A  R PV GK  HA  +  G   D        + Y K  L   ARK+FDE+
Sbjct: 110 TFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R + +WN  I +  T+GR +EA+  FI   R G  P S  T    L AC+    +   
Sbjct: 170 PERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNS-ITFCGFLNACSDGLLLDLG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H    ++  D +V V   L+D Y KC  I  +  +F  M  +N V+W S+VA +VQN
Sbjct: 229 MQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+A +L+ R++   +E + F ISSV+ ACAG+A L  G+ +HA   K     N+F  
Sbjct: 289 HEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVG 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAG 332
           S+LVDMY KCGC+ D+   F  + EKN+V  N++I G++   +    + LFE M  +  G
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCG 408

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             PN  T++S+LSACS  G VE G   FD M   + + P   HYSC++D+LGRAG++ +A
Sbjct: 409 PAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQA 468

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           ++ I  MP   T S+WG+L  +CR +    L  +AA+ LF ++P ++GNH+LLSN +AA 
Sbjct: 469 FEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAA 528

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            RW E    R+ ++   +KK    SW+ +K +        R+H    EI + L KL  +M
Sbjct: 529 GRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKM 588

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           +  GYKP+ +  L+D+E+  K   + HHSEKLAL FGL+ L   VPIRI KNLRICGDCH
Sbjct: 589 EAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCH 648

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           SF KF S    RE IVRD NRFH F +G CSC D+W
Sbjct: 649 SFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 227/467 (48%), Gaps = 19/467 (4%)

Query: 52  GKVCHAKII-GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+V HA+I+  +        +N LIN YSK      AR V    P R +VSW +++    
Sbjct: 25  GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLA 84

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NG    A+  F  M REG  P ++FT   V  A A+ R     KQ+H  A+K     +V
Sbjct: 85  QNGHFSTALFEFFEMRREGVAP-NDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDV 143

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FVG +  D+Y K  L  DA ++F+ +PERN  TW++ ++  V +   +EA+  F   + +
Sbjct: 144 FVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRI 203

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G + N  T    + AC+    L  G Q+H ++ ++GF +++   + L+D Y KC  +  +
Sbjct: 204 GGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSS 263

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F+ +  KN V W ++++ + ++    +  +L+ + ++  +  ++    SVLSAC+ +
Sbjct: 264 EIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGM 323

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
             +E G+S     VK   V  N+F  S ++D+ G+ G I ++      MP     ++  S
Sbjct: 324 AGLELGRSIHAHAVKA-CVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTL-NS 381

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAG---NHLLLSNIYAANRRWEEVARARKLIRD 467
           L+     Y +    ++A      M P   G   N++   ++ +A  R   V    K+  D
Sbjct: 382 LIG---GYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIF-D 437

Query: 468 SEVKKEKSKSWVEIKGKRNHPRIAEIYSK---LEKLVEEMKKLGYKP 511
           S     KS   +E  G  ++  I ++  +   +E+  E +KK+  KP
Sbjct: 438 S----MKSTYGIE-PGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKP 479


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 350/580 (60%), Gaps = 11/580 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           AT+ + L + LQ+C    A   G   H  ++  G   +    + L + YSKCG +S A K
Sbjct: 174 ATQFA-LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACK 232

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
            F+EMP +  V W ++I  +  NG  ++A+  ++ M+ +      +  + S L AC+A +
Sbjct: 233 AFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTD-DVFIDQHVLCSTLSACSALK 291

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMV 208
                K LH   LK   +   F+G AL D+Y+K G +  AS VF+   +  + V+ ++++
Sbjct: 292 ASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAII 351

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            G+V+ +  E+AL  F   +  G+E N+FT +S+I ACA  A L  G Q+H  + K  F 
Sbjct: 352 DGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFK 411

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            + F +S+LVDMY KCG    +  +F  IE  + + WNT++  FS+H      +  F  M
Sbjct: 412 RDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGM 471

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
              GL PN  T++++L  CSH GMVE G +YF  M K + V+P   HYSC+ID+LGRAG 
Sbjct: 472 IHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGK 531

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA D I NMPF+     W S L +C+ + ++E A+ AA +L  +EP+N+G H+LLSNI
Sbjct: 532 LKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNI 591

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKL 500
           YA  ++WE+V   RK+I+D  + K    SWV+I+ K +        HP+  EIY KL+ L
Sbjct: 592 YAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNL 651

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
           ++++K++GY P+TE  L D++D+ K++LL +HSE++A+ F L+    G+PI + KNLR+C
Sbjct: 652 LDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVC 711

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCHS +KF S++  R  IVRD++RFHHF+NGSCSC D+W
Sbjct: 712 SDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 3/366 (0%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           ++  T+   +Q+ AR +   +GK  HA +I  G   +T  SN  +N YSKCG +    K+
Sbjct: 73  SDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKL 132

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD+M QR +VSW +II  +  N R QEA++ F  M  EG+   ++F +SSVL AC +   
Sbjct: 133 FDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIA-TQFALSSVLQACTSLGA 191

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +    Q+H   +K      +FVG+ L D+Y+KCG +SDA + FE MP ++ V W+SM+ G
Sbjct: 192 IQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDG 251

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           FV+N  +++AL  + +     +  +Q  + S + AC+ L A   GK +HA + K GF   
Sbjct: 252 FVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYE 311

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            F  ++L DMY+K G +V A  VF    +  ++V    +I G+    +  + +  F  ++
Sbjct: 312 TFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLR 371

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           + G+ PNE T+ S++ AC++   +E G      +VK  N   + F  S ++D+ G+ GL 
Sbjct: 372 RRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK-FNFKRDPFVSSTLVDMYGKCGLF 430

Query: 390 HEAYDL 395
             +  L
Sbjct: 431 DHSIQL 436



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 131/242 (54%)

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           N+   G       TV+ ++   A  +++ + KQLH   ++     N F+    L++Y+KC
Sbjct: 64  NLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKC 123

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +    ++F+ M +RN V+W+S++ GF  N  ++EAL  F + ++ G    QF +SSV+
Sbjct: 124 GELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVL 183

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC  L A+  G QVH ++ K GFG  +F  S+L DMY+KCG + DA   F  +  K+ V
Sbjct: 184 QACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAV 243

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           LW +MI GF ++    + +  + KM    +  ++    S LSACS +     GKS    +
Sbjct: 244 LWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATI 303

Query: 364 VK 365
           +K
Sbjct: 304 LK 305


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/557 (39%), Positives = 339/557 (60%), Gaps = 10/557 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H   +  G  +    S  L++ YSKCG +  AR +FD M  + +VSWN++I  Y  
Sbjct: 295 GRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQ 354

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG    A+ +F  M+ E +   +  TV   L ACA   DV + + +H    +  +  +V 
Sbjct: 355 NGDPGAAMEIFQKMMDE-QVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVS 413

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  +L+ +Y+KC  +  A+ +FE++  +  V+W++M+ G+ QN    EA+  F + Q+  
Sbjct: 414 VMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQN 473

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ + FT+ SVI A A L+ L Q K +H ++ +T    N+F A++LVDMYAKCG V  A 
Sbjct: 474 IKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTAR 533

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  ++E++V  WN MI G+  H      + LFEKM++  + PNE T++ VLSACSH G
Sbjct: 534 KLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSG 593

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+G  YF  M K + + P + HY  M+D+LGRA  ++EA+D I  MP +   S++G++
Sbjct: 594 LVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAM 653

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L +CR ++N+EL E AA ++F ++PD+ G H+LL+NIYA    W++VAR R  +    ++
Sbjct: 654 LGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQ 713

Query: 472 KEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           K    S VE++        G  +HP+  +IY+ LE L   +K  GY P+T + +HDVED 
Sbjct: 714 KTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDT-NSVHDVEDV 772

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
            K++LL  HSEKLA+ F L+   PG  I + KNLR+CGDCH+  K+ S +  RE IVRD+
Sbjct: 773 VKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDM 832

Query: 584 NRFHHFTNGSCSCWDFW 600
            RFHHF +G+CSC D+W
Sbjct: 833 RRFHHFKDGTCSCGDYW 849



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 205/373 (54%), Gaps = 3/373 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C       +GK  H ++I  G  ++      ++N Y+KC L+  A K+FD MP+R +
Sbjct: 182 LKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDL 241

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V WNTII  Y  NG  + A+ L + M  EGK P S  T+ S+L A A    +   + +H 
Sbjct: 242 VCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDS-ITIVSILPAVADVGSLRIGRSIHG 300

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           ++++A  +  V V TAL+D+Y+KCG +  A  +F+ M  +  V+W+SM+ G+VQN     
Sbjct: 301 YSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGA 360

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ +F++     +E    T+   + ACA L  + QG+ VH +L +   GS++   +SL+ 
Sbjct: 361 AMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLIS 420

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KC  V  A  +F  ++ K +V WN MI G++++ R  E +  F KMQ   + P+  T
Sbjct: 421 MYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFT 480

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            +SV+ A + + ++ + K    L+++   +  NVF  + ++D+  + G +H A  L  +M
Sbjct: 481 MVSVIPALAELSVLPQAKWIHGLVIRT-CLDKNVFVATALVDMYAKCGAVHTARKL-FDM 538

Query: 400 PFDATASMWGSLL 412
             +   + W +++
Sbjct: 539 MDERHVTTWNAMI 551



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 195/381 (51%), Gaps = 3/381 (0%)

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           II  GL ++ L    L++ + K G +  A +VF  +  +    ++T++  Y  N    +A
Sbjct: 100 IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDA 159

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           V+ F  M  +G  P   +  + +L  C    D+ + K++H   +      NVF  T +++
Sbjct: 160 VSFFCRMRYDGVRPVV-YNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVN 218

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +YAKC L+ +A ++F+ MPER+ V W+++++G+ QN   + AL L  R Q  G   +  T
Sbjct: 219 MYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSIT 278

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           I S++ A A + +L  G+ +H    + GF S +  +++LVDMY+KCG V  A  +F  + 
Sbjct: 279 IVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMT 338

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            K VV WN+MI G+ ++      M +F+KM    +     T +  L AC+ +G VE+G+ 
Sbjct: 339 GKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGR- 397

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
           +   ++ Q  +  +V   + +I +  +   +  A ++  N+      S    +L   +N 
Sbjct: 398 FVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNG 457

Query: 419 RNLELAEIAAK-QLFGMEPDN 438
           R  E  +   K QL  ++PD+
Sbjct: 458 RINEAIDYFCKMQLQNIKPDS 478



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 153/289 (52%), Gaps = 4/289 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +CA      +G+  H  +  + L +D    N LI+ YSKC  +  A ++F+ +
Sbjct: 379 TVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENL 438

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWN +I  Y  NGR  EA+  F  M  +   P S FT+ SV+ A A    + + 
Sbjct: 439 QHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDS-FTMVSVIPALAELSVLPQA 497

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   ++  +D+NVFV TAL+D+YAKCG +  A ++F+ M ER+  TW++M+ G+  +
Sbjct: 498 KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTH 557

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
            L + AL LF + +   ++ N+ T   V+ AC+    + +G Q    + K  G    M  
Sbjct: 558 GLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDH 617

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
             ++VD+  +   + +A+ F+     E  + ++  M+ G  R  ++VE+
Sbjct: 618 YGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAML-GACRIHKNVEL 665



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 6/149 (4%)

Query: 256 KQVH---AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
           K++H    ++ K G  S     + LV ++ K G + +A  VF  IE+K   L++TM+ G+
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS-YFDLMVKQHNVLP 371
           +R++   + +  F +M+  G+ P    +  +L  C     + KGK  +  L+V  +    
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIV--NGFAS 208

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           NVF  + ++++  +  L+ EAY +   MP
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMP 237


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/619 (38%), Positives = 344/619 (55%), Gaps = 81/619 (13%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVA 120
           GL  D   ++ L++ Y + G    AR +FD MP  QR +V W+ ++ ++   G  + A  
Sbjct: 47  GLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWR 106

Query: 121 LFINMLREGKTPYSEFT---------------------------------VSSVLCACAA 147
           L   M R+G    +  T                                  + V CA +A
Sbjct: 107 LLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSA 166

Query: 148 KRDVFEC---KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP------- 197
             DV      +QLH +A+KA    +  V TAL+D+Y KCG  ++  RVF+          
Sbjct: 167 VGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASC 226

Query: 198 ----------------------------ERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
                                       E N V+W+S+VA  VQN    EA+  FR  Q 
Sbjct: 227 NALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQA 286

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G E N  TI  V+ A A +AAL+ G+  H    + GF  +++ +S+LVDMYAKCG V D
Sbjct: 287 QGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKD 346

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  +F  +  +NVV WN MI G++ +  +V  + +F  M +    P+  T+  +L+AC+ 
Sbjct: 347 ARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQ 406

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+ E+G+ YF  M  ++ V P + HY+CM+ +LGRAG + EAYDLI +MPF+  A +WG
Sbjct: 407 AGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWG 466

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLL SCR + N++LAE+AA++LF +EP+NAGN++LLSNIYA+ + W+ V R R++++D  
Sbjct: 467 SLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVG 526

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           +KKEK  SW+EIK        G  +HP +  I  K+ +L  +M+KLG+ P T+  LHDVE
Sbjct: 527 LKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVE 586

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K ++L  HSEKLA+  GL+   PG  +R++KNLRICGDCH  MKF S   GRE  VR
Sbjct: 587 EQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVR 646

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF+ G CSC DFW
Sbjct: 647 DTNRFHHFSGGKCSCGDFW 665



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 134/317 (42%), Gaps = 44/317 (13%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM----------------- 94
           G+  H   +  G   D      LI+ Y KCG  +   +VFDE                  
Sbjct: 176 GQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSR 235

Query: 95  -PQRC-----------------IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
             Q C                 +VSW +I+     NG++ EAV  F  M  +G  P S  
Sbjct: 236 NAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNS-V 294

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T+  VL A A    +   +  H FAL+     +V+V +AL+D+YAKCG + DA  +F++M
Sbjct: 295 TIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTM 354

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG- 255
             RN V+W++M+ G+        A+ +F        + +  T + ++ AC       +G 
Sbjct: 355 VSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGR 414

Query: 256 ---KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISG 311
              K++H    + G    M   + +V +  + G + +AY + S +  E +  +W +++  
Sbjct: 415 HYFKEMHN---EYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGS 471

Query: 312 FSRHARSVEVMILFEKM 328
              H       +  EK+
Sbjct: 472 CRVHGNVDLAEVAAEKL 488



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 41/276 (14%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP----------------- 197
           + LH  A  + + R+ FV ++LL  Y + G   +A  +F+ MP                 
Sbjct: 37  RALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHA 96

Query: 198 ---------------------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
                                E N +TW+ +V+G  ++    +A++        GL    
Sbjct: 97  ARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPD 156

Query: 237 FTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            T  S   +  G   L+  G+Q+H    K G  ++    ++L+DMY KCG   +   VF 
Sbjct: 157 ATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFD 216

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
                +V   N +I+G SR+A+  E + LF++    G+  N  ++ S+++ C   G   +
Sbjct: 217 ESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLE 276

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGR-AGLIH 390
              +F  M  Q    PN     C++      A L+H
Sbjct: 277 AVEFFREMQAQ-GTEPNSVTIPCVLPAFANVAALMH 311



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 17/193 (8%)

Query: 27  NANATELS--TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
            A  TE +  T+   L + A   A + G+  H   +  G  +D   S+ L++ Y+KCG +
Sbjct: 285 QAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRV 344

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             AR +FD M  R +VSWN +IG Y   G    AV +F +ML+  + P    T + +L A
Sbjct: 345 KDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKP-DMVTFTCLLAA 403

Query: 145 CAAK------RDVFECKQLH-VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           C         R  F  K++H  + +   M+    + T L     + G + +A  +   MP
Sbjct: 404 CTQAGLTEEGRHYF--KEMHNEYGVSPRMEHYACMVTLL----GRAGKLDEAYDLISDMP 457

Query: 198 -ERNEVTWSSMVA 209
            E +   W S++ 
Sbjct: 458 FEPDAYIWGSLLG 470


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/643 (36%), Positives = 353/643 (54%), Gaps = 77/643 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + +++CA   A    +  H      G ++D+   + L++ Y KC  I  A +VFD M
Sbjct: 116 VLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM 175

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP-----------------YSE-- 135
            +  +VSW+ ++ +Y   G   EA  LF  M   G  P                 YSE  
Sbjct: 176 FEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAV 235

Query: 136 ---------------FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
                           T+SSVL A     D+     +H + +K  +  +  V +AL+D+Y
Sbjct: 236 LMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMY 295

Query: 181 AKCGLISDASRVFESMP-----------------------------------ERNEVTWS 205
            KC   S+ S+VF+ M                                    E N V+W+
Sbjct: 296 GKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWT 355

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           SM+A   QN    EAL LFR  Q+ G++ N  TI  ++ AC  +AAL+ GK  H    + 
Sbjct: 356 SMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR 415

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G  ++++  S+L+DMYAKCG +  +   F GI  KN+V WN +I+G++ H ++ E M +F
Sbjct: 416 GISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIF 475

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           + MQ++G  P+  ++  VLSACS  G+ E+G  YF+ M  ++ +   V HY+CM+ +L R
Sbjct: 476 DLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSR 535

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           AG + +AY +I  MP +  A +WG+LL+SCR + N+ L E+AA++LF +EP N GN++LL
Sbjct: 536 AGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILL 595

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKL 497
           SNIYA+   W EV R R ++++  ++K    SW+E+K        G ++HP++ +I  KL
Sbjct: 596 SNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKL 655

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           +KL  EMKKLGY PE    L DVE+  K+++L  HSEKLA+ FGL+   PG P++++KNL
Sbjct: 656 DKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNL 715

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RICGDCH  +KF S    RE  VRD NRFHHF  G+CSC D+W
Sbjct: 716 RICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 202/442 (45%), Gaps = 75/442 (16%)

Query: 23  SASANANATELSTLQATLQSCARERAPV--RGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           S SA A A  L ++Q T+ +C         + +  HA I+  GL NDT  +  L++ Y+ 
Sbjct: 2   SLSAQALAL-LDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN 60

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
               + A  V D +P+  + S++T+I +++   +   A++ F  ML  G  P +    S+
Sbjct: 61  NMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSA 120

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           V  ACA    +   +Q+H  A  +  D + FV ++L+ +Y KC  I DA RVF+ M E +
Sbjct: 121 VK-ACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPD 179

Query: 201 EVTWSS-----------------------------------MVAGFVQNELYEEALILFR 225
            V+WS+                                   M+AGF  + LY EA+++F 
Sbjct: 180 VVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFL 239

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
              + G E +  TISSV+ A   L  L+ G  +H  + K G  S+   +S+L+DMY KC 
Sbjct: 240 DMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCS 299

Query: 286 CVVDAYFVFSGIE-----------------------------------EKNVVLWNTMIS 310
           C  +   VF  ++                                   E NVV W +MI+
Sbjct: 300 CTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIA 359

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
             S++ R +E + LF +MQ AG+ PN  T   +L AC +I  +  GK+     +++  + 
Sbjct: 360 CCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR-GIS 418

Query: 371 PNVFHYSCMIDILGRAGLIHEA 392
            +V+  S +ID+  + G I  +
Sbjct: 419 TDVYVGSALIDMYAKCGRIQAS 440


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 350/580 (60%), Gaps = 20/580 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDT----LTSNILINFYSKCGLISGARK 89
           +L   ++ C R      G++ H  +   G L +D       SN L + Y+K GL+  A +
Sbjct: 66  SLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALR 125

Query: 90  VFDEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           +FD MP R +V+W T++ +  + +GR+QEA+   + M R+G  P + +T SSVL AC   
Sbjct: 126 MFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAP-NAYTFSSVLGACTTP 184

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
             +     +H   +KA +D +VFV ++L+D Y K G +    RVF+ M  R+ V W+S++
Sbjct: 185 GML---TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSII 241

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           AGF Q+     A+ LF R +  G   NQ T++SV+ AC G+  L  G+QVHA + K  + 
Sbjct: 242 AGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YD 299

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            ++   ++L+DMY KCG + DA  +F  + +++V+ W+TM+SG +++ +SVE + +F+ M
Sbjct: 300 RDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLM 359

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           +  G+ PN  T + VL ACSH G+VE G  YF  M +   + P   H++CM+D+LGRAG 
Sbjct: 360 KSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGK 419

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA + I  M  +  + +W +LL +CR ++N  LA  AA+++  +EPD+ G  +LLSN 
Sbjct: 420 LDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNT 479

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKL 500
           YA  R+W +  +  K +RD  ++KE  +SW+E        I G  +HP    I  +L +L
Sbjct: 480 YADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRL 539

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
           +  +K LGY P+TE  L D+   +K++LL +HSEK+A+ FG M    G PIRIMKNLRIC
Sbjct: 540 IGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRIC 599

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCH+F K  S+  GR  ++RD  RFHHF +G+CSC D+W
Sbjct: 600 GDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 345/576 (59%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  CA+        + H  +I  GL  +   SN LIN Y+K G +  A+KVF +M
Sbjct: 275 TVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN+II +Y  N     A   F  M   G  P    T+ S+    A  RD    
Sbjct: 335 FLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP-DLLTLVSLASIAAQSRDYKNS 393

Query: 155 KQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           + +H F ++   +   V +G A++D+YAK G+I  A +VF  +P ++ V+W+++++G+ Q
Sbjct: 394 RSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQ 453

Query: 214 NELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N L  EA+ ++R   +   ++ NQ T  S++ A A + AL QG ++H  L KT    ++F
Sbjct: 454 NGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVF 513

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             + L+D+Y KCG +VDA  +F  +  ++ V WN +IS    H    + + LF +MQ  G
Sbjct: 514 VGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEG 573

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T+IS+LSACSH G+V++GK +F LM +++ + P++ HY CM+D+LGRAG +  A
Sbjct: 574 VKPDHVTFISLLSACSHSGLVDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMA 632

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           YD I +MP    AS+WG+LL +CR + N+EL + A+ +LF ++ +N G ++LLSNIYA  
Sbjct: 633 YDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANV 692

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            +WE V + R L R+  +KK    S +E+         G ++HP+  EIY++L  L  +M
Sbjct: 693 GKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKM 752

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K LGY P+    L DVE+  K+ +L  HSE+LA+ FG++   P   IRI KNLR+CGDCH
Sbjct: 753 KSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCH 812

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  KF SRI  RE +VRD  RFHHF NG CSC D+W
Sbjct: 813 NATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 224/419 (53%), Gaps = 10/419 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T    L++C   +  V G+  H  +  +G   D   +  LI+ YS+ G +  AR +F
Sbjct: 174 DFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLF 230

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R + SWN +I     NG   +A+ +   M  EG       TV+S+L  CA   D+
Sbjct: 231 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG-INMDSVTVASILPVCAQLGDI 289

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                +H++ +K  ++  +FV  AL+++YAK G + DA +VF+ M  R+ V+W+S++A +
Sbjct: 290 STATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAY 349

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSN 270
            QN+    A   F + Q+ GLE +  T+ S+    A        + VH  + + G+    
Sbjct: 350 EQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEA 409

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   ++++DMYAK G +  A+ VF+ I  K+VV WNT+ISG++++  + E + ++  M++
Sbjct: 410 VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469

Query: 331 A-GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
              +  N+ T++S+L+A +H+G +++G      ++K  N+  +VF  +C+ID+ G+ G +
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT-NLHLDVFVGTCLIDLYGKCGRL 528

Query: 390 HEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
            +A  L   +P +++   W ++++      +    L      Q  G++PD+     LLS
Sbjct: 529 VDAMCLFYQVPRESSVP-WNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLS 586



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 195/379 (51%), Gaps = 7/379 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
             +   SC +    +  K  HA ++  G       S  L+N Y+  G +S +R  FD++ 
Sbjct: 79  FNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQ 135

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           ++ + +WN++I +Y  NG  +EA+  F  +L   K     +T   VL AC   + + + +
Sbjct: 136 RKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGR 192

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           ++H +  K     +VFV  +L+ +Y++ G +  A  +F+ MP R+  +W++M++G +QN 
Sbjct: 193 KIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNG 252

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
              +AL +    ++ G+  +  T++S++  CA L  +     +H  + K G    +F ++
Sbjct: 253 NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSN 312

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +L++MYAK G + DA  VF  +  ++VV WN++I+ + ++   V     F KMQ  GL P
Sbjct: 313 ALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP 372

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           +  T +S+ S  +     +  +S    ++++  ++  V   + ++D+  + G+I  A+ +
Sbjct: 373 DLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKV 432

Query: 396 ILNMPFDATASMWGSLLAS 414
              +P     S W +L++ 
Sbjct: 433 FNLIPVKDVVS-WNTLISG 450


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/575 (39%), Positives = 341/575 (59%), Gaps = 9/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            T    L++CA   A   GK  HA I   GL +D      L+  Y KCG I+ AR++FD 
Sbjct: 130 GTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +    I+SW  +IG+Y  +G  +EA  L + M +EG  P +  T  S+L ACA++  +  
Sbjct: 190 LMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKP-NAITYVSILNACASEGALKW 248

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K++H  AL A ++ +V VGTAL+ +YAK G I DA  VF+ M  R+ V+W+ M+  F +
Sbjct: 249 VKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAE 308

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    EA  LF + Q  G + +     S++ ACA   AL   K++H     +G   ++  
Sbjct: 309 HGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRV 368

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV MY+K G + DA  VF  ++ +NVV WN MISG ++H    + + +F +M   G+
Sbjct: 369 GTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGV 428

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+++VLSACSH G+V++G+S +  M + + + P+V H +CM+D+LGRAG + EA 
Sbjct: 429 KPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAK 488

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I NM  D   + WG+LL SCR Y N+EL E+ AK+   ++P NA  ++LLSNIYA   
Sbjct: 489 LFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAG 548

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           +W+ V+  R ++R+  ++KE  +SW+E+  K         +HP   EI    +K++E++K
Sbjct: 549 KWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIK 608

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             GY P+T   L +     K+  +  HSEKLA+ +GLM   PG PIR+ KNLR+C DCH 
Sbjct: 609 AEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHG 668

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K  S++ GRE IVRD NRFHHF +G CSC D+W
Sbjct: 669 ATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 211/435 (48%), Gaps = 37/435 (8%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            L+ C +++  +  K  H  II   +  +    N L++ Y +CG +  AR VFD + ++ 
Sbjct: 34  VLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKS 93

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
             SWN +I  Y  +   ++A+ LF  M  EG  P +  T   +L ACA+   +   K++H
Sbjct: 94  GASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQP-NAGTYMIILKACASLSALKWGKEVH 152

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                  ++ +V VGTALL +Y KCG I++A R+F+++   + ++W+ M+  + Q+   +
Sbjct: 153 ACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGK 212

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA  L  + +  G + N  T  S++ ACA   AL   K+VH      G   ++   ++LV
Sbjct: 213 EAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALV 272

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            MYAK G + DA  VF  ++ ++VV WN MI  F+ H R  E   LF +MQ  G  P+  
Sbjct: 273 QMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAI 332

Query: 339 TYISVLSACSHIGMVE-------------------KGKSYFDLMVKQHNV---------- 369
            ++S+L+AC+  G +E                    G +   +  K  ++          
Sbjct: 333 MFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRM 392

Query: 370 -LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS---MWGSLLASCRNYRNLELAE 425
            + NV  ++ MI  L + GL  +A ++   M           + ++L++C +   ++   
Sbjct: 393 KVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGR 452

Query: 426 ---IAAKQLFGMEPD 437
              +A  Q++G+EPD
Sbjct: 453 SQYLAMTQVYGIEPD 467



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 172/339 (50%), Gaps = 34/339 (10%)

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           EA+ + +N L+ G    S F    VL  C  ++D+   KQ+H   +K+ M++N  V   L
Sbjct: 11  EAIVVLMNRLQRGLITDS-FMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           L VY +CG + +A  VF+++ +++  +W++M+AG+V+++  E+A+ LFR     G++ N 
Sbjct: 70  LHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNA 129

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            T   ++ ACA L+AL  GK+VHA +   G  S++   ++L+ MY KCG + +A  +F  
Sbjct: 130 GTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM---- 352
           +   +++ W  MI  +++     E   L  +M+Q G  PN  TY+S+L+AC+  G     
Sbjct: 190 LMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWV 249

Query: 353 ---------------VEKGKSYFDLMVKQHNV-----------LPNVFHYSCMIDILGRA 386
                          V  G +   +  K  ++           + +V  ++ MI      
Sbjct: 250 KRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEH 309

Query: 387 GLIHEAYDLILNMPFDA---TASMWGSLLASCRNYRNLE 422
           G  HEAYDL L M  +     A M+ S+L +C +   LE
Sbjct: 310 GRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE 348



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 5/204 (2%)

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L E  ++L  R Q  GL  + F    V+  C     L+  KQVH  + K+    N   
Sbjct: 7   NTLSEAIVVLMNRLQ-RGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHV 65

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ +Y +CG + +A  VF  + +K+   WN MI+G+  H  + + M LF +M   G+
Sbjct: 66  MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA- 392
            PN  TY+ +L AC+ +  ++ GK      ++   +  +V   + ++ + G+ G I+EA 
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVH-ACIRHGGLESDVRVGTALLRMYGKCGSINEAR 184

Query: 393 --YDLILNMPFDATASMWGSLLAS 414
             +D ++N    +   M G+   S
Sbjct: 185 RIFDNLMNHDIISWTVMIGAYAQS 208


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 356/589 (60%), Gaps = 42/589 (7%)

Query: 52   GKVCHAKII-GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
            G++  A++I    LN + +  N +I  Y++ G++  A+ +F +MP +   SW  +I  + 
Sbjct: 472  GRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFV 531

Query: 111  TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
             N   +EA+ L I + R G  P S+ + +S L ACA   DV   + +H  A+K     N 
Sbjct: 532  QNEESREALELLIELHRSGSVP-SDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS 590

Query: 171  FVGTALLDVYAKCG-------------------------------LISDASRVFESMPER 199
            +V   L+ +YAKCG                               ++ DA  VFE MP+R
Sbjct: 591  YVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKR 650

Query: 200  NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
            + V+W+++++ +VQ    E AL LF      G++ NQ T++S++ AC  L A+  G+Q H
Sbjct: 651  DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 260  AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            A++ K GF + +F  +SL+ MY KCG   D + VF  + E +++ WN ++ G +++    
Sbjct: 711  ALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGK 769

Query: 320  EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            E + +FE+M+  G+ P++ +++ VL ACSH G+V++G ++F+ M +++ ++P V+HY+CM
Sbjct: 770  EAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCM 829

Query: 380  IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
            +D+LGRAG + EA  LI NMP    + +W +LL +CR +RN+EL +  A++LF M    +
Sbjct: 830  VDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKS 889

Query: 440  GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
              ++LLSN++A+   W++VA  RKL++D  + KE   SW+++K        G R H +I 
Sbjct: 890  ATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIE 949

Query: 492  EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
            EIYS L++     +  GY P+T   LHDVE+ +KQ  L++HSEKLA+ FG++    G PI
Sbjct: 950  EIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPI 1009

Query: 552  RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +I+KNLRICGDCH+FMKF S++  R+ I+RD NRFHHF +GSCSC D+W
Sbjct: 1010 QIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 163/337 (48%), Gaps = 40/337 (11%)

Query: 60  IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119
           I  G   D +  + ++N Y++ G +  A   F+ MP+R   SW T+I ++   GR  +A+
Sbjct: 388 IKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAI 447

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            L+       + P  E TV++      A   V   ++  +      ++ NV    A++  
Sbjct: 448 QLY------ERVP--EQTVATKTAMMTAYAQVGRIQKARLI-FDEILNPNVVAWNAIIAG 498

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y + G++ +A  +F+ MP +N  +W++M+AGFVQNE   EAL L       G   +  + 
Sbjct: 499 YTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSF 558

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           +S + ACA +  +  G+ +H++  KTG   N +  + L+ MYAKCG V D   VF  I  
Sbjct: 559 TSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRV 618

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQ----------------------------- 330
           K+ V WN++ISG S +    +  ++FEKM +                             
Sbjct: 619 KDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 678

Query: 331 --AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
              G+ PN+ T  S+LSAC ++G ++ G+ +  L+ K
Sbjct: 679 LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFK 715



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 181/367 (49%), Gaps = 38/367 (10%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG----------- 82
           S+  + L +CA       G+V H+  I  G   ++   N LI+ Y+KCG           
Sbjct: 556 SSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRT 615

Query: 83  -----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
                      LISG         AR VF++MP+R +VSW  II +Y   G  + A+ LF
Sbjct: 616 IRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLF 675

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           ++ML  G  P ++ TV+S+L AC     +   +Q H    K   D  +FVG +L+ +Y K
Sbjct: 676 LDMLARGIKP-NQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFK 734

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG   D   VFE MPE + +TW++++ G  QN L +EA+ +F + +V G+  +Q +   V
Sbjct: 735 CGY-EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGV 793

Query: 243 ICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK- 300
           +CAC+    + +G    +++  K G    ++  + +VD+  + G + +A  +   +  K 
Sbjct: 794 LCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKP 853

Query: 301 NVVLWNTMISGFSRHARSVEV-MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           + V+W  ++ G  R  R+VE+   + E++ Q    P   TY+ + +  +  GM +K    
Sbjct: 854 DSVIWEALL-GACRIHRNVELGQRVAERLFQM-TKPKSATYVLLSNLFASQGMWDKVAEI 911

Query: 360 FDLMVKQ 366
             LM  Q
Sbjct: 912 RKLMKDQ 918



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 178/360 (49%), Gaps = 11/360 (3%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y  C  +S AR++FD+MP+R  VSW  +I  Y       EA  +F+ M R    
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P     V  VL A     D+     L   A+K   + +V VG+A+L+ Y + G +  A  
Sbjct: 359 PDQSIFVV-VLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMH 417

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
            FE+MPERNE +W++M+A F Q    ++A+ L+ R      E    T ++++ A A +  
Sbjct: 418 FFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP----EQTVATKTAMMTAYAQVGR 473

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           + + + +   +       N+ A ++++  Y + G + +A  +F  +  KN   W  MI+G
Sbjct: 474 IQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           F ++  S E + L  ++ ++G  P++ ++ S LSAC++IG VE G+    L +K      
Sbjct: 530 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQF- 588

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
           N +  + +I +  + G + +   +   +    T S W SL++       L+ A +  +++
Sbjct: 589 NSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS-WNSLISGLSENYMLDDARVVFEKM 647



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 178/370 (48%), Gaps = 44/370 (11%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N  I    + G +  AR+VF+EM QR +VSWN++I  Y+ NG+  EA  LF   +  GK 
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFV--GKN 232

Query: 132 PYSEFTVSSVLCACAAK-------RDVFEC-KQLHVFALKAAM----------------- 166
                   ++L    AK       R+VFE   + +V +  A +                 
Sbjct: 233 ----IRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFD 288

Query: 167 ---DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALIL 223
              ++NV    +++  Y  C  +S+A  +F+ MPERN V+W  M++G+V    Y EA  +
Sbjct: 289 EMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDV 348

Query: 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
           F +        +Q     V+ A  GL  L     +  +  KTG+  ++   S++++ Y +
Sbjct: 349 FVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTR 408

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
            G +  A   F  + E+N   W TMI+ F++  R  + + L+E++ +  +     T  ++
Sbjct: 409 NGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAM 464

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           ++A + +G ++K +  FD ++      PNV  ++ +I    + G++ EA DL   MP   
Sbjct: 465 MTAYAQVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKN 519

Query: 404 TASMWGSLLA 413
           +AS W +++A
Sbjct: 520 SAS-WAAMIA 528



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 88/170 (51%), Gaps = 16/170 (9%)

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           +++F  ++ +    + G V +A  VF+ + +++VV WN+MI+G+S++ +  E  +LF+  
Sbjct: 169 THLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD-- 226

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
             A +  N +T+  +L+  +  G +E+ +  F+ M ++     NV  ++ MI    + G 
Sbjct: 227 --AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTER-----NVVSWNAMISGYVQNGD 279

Query: 389 IHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLELAEIAAKQLFGMEPD 437
           +  A  L   MP    AS W S++   C  YR  E     A++LF   P+
Sbjct: 280 LKNARKLFDEMPEKNVAS-WNSVVTGYCHCYRMSE-----ARELFDQMPE 323


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 346/571 (60%), Gaps = 11/571 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +C   R    G+     I+G G+  +++    L++ Y K G  + A  VF  M  R +
Sbjct: 68  LSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDV 127

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W+ ++ +Y  NG  +EA+ LF  M  +G  P ++ T+ S L ACA+  D+     +H 
Sbjct: 128 VAWSAMVAAYARNGHPREALGLFRQMDLDGVAP-NKVTLVSGLDACASLGDLRSGALMHQ 186

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
                 +   V VGTAL+++Y KCG I  A   F  + E+N V WS++ A + +N+   +
Sbjct: 187 RVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRD 246

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH--AVLCKTGFGSNMFAASSL 277
           A+ +  R  + GL  N  T  SV+ ACA +AAL QG+++H    +   G  S+++  ++L
Sbjct: 247 AIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTAL 306

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           V+MY+KCG +  A  +F  I   ++VLWN++I+  ++H ++ + + LFE+M+  GL P  
Sbjct: 307 VNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTI 366

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+ SVL ACSH GM+++G+ +F   +  H + P   H+ CM+D+LGRAG I ++ DL+L
Sbjct: 367 ITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLL 426

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +MPF+     W + L +CR YRN++ A  AA+ LF ++P     ++LLSN+YA   RW +
Sbjct: 427 HMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSD 486

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           VAR R+ ++     KE  +SW+E+K        G  +HPRI EI+++L++L + MK+ GY
Sbjct: 487 VARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKEAGY 546

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+TE  LHDV+   K+ ++ +HSEKLA+ F L+    G PIR++KNLR+C DCH+  KF
Sbjct: 547 VPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKF 606

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++  RE +VRD NRFH F NG+CSC D+W
Sbjct: 607 ISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 194/372 (52%), Gaps = 17/372 (4%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           +++ YS+ G I   RK FDEMP   IVSWN +I +Y  N         F  ML +G  P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINP- 59

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
            E  +S  L AC   R++   + + +  L   ++    V TAL+ +Y K G  +DA+ VF
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
             M  R+ V WS+MVA + +N    EAL LFR+  + G+  N+ T+ S + ACA L  L 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G  +H  +   G  S +   ++LV++Y KCG +  A   F  I EKNVV W+ + + ++
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD-LMVKQHNVLPN 372
           R+ R+ + + +  +M   GL PN  T++SVL AC+ I  +++G+   +   V    +  +
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS----MWGSLLASCRNY----RNLELA 424
           V+  + ++++  + G +  A D+     FD  A     +W SL+A+   +    + LEL 
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDM-----FDKIAHLDLVLWNSLIATNAQHGQTEKALELF 354

Query: 425 EIAAKQLFGMEP 436
           E    +L G++P
Sbjct: 355 E--RMRLEGLQP 364



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 137/259 (52%), Gaps = 4/259 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +CA       G + H ++   G+ +  +    L+N Y KCG I  A + F ++
Sbjct: 164 TLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI 223

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +V+W+ I  +Y  N R ++A+ +   M  EG  P S  T  SVL ACAA   + + 
Sbjct: 224 VEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNST-TFVSVLDACAAIAALKQG 282

Query: 155 KQLH--VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           +++H     L   ++ +V+V TAL+++Y+KCG ++ A  +F+ +   + V W+S++A   
Sbjct: 283 RRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNA 342

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNM 271
           Q+   E+AL LF R ++ GL+    T +SV+ AC+    L QG K   + +   G     
Sbjct: 343 QHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEA 402

Query: 272 FAASSLVDMYAKCGCVVDA 290
                +VD+  + G +VD+
Sbjct: 403 EHFGCMVDLLGRAGWIVDS 421


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/556 (39%), Positives = 339/556 (60%), Gaps = 9/556 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  H   I  G   D L +N  +  Y+KCG++  A +VF  M  + + SWN +IG    N
Sbjct: 256 KELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQN 315

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G  ++A+ L+I M   G  P   FT+ S+L A A  + +   K++H F L+  ++ + F+
Sbjct: 316 GDPRKALNLYIQMTYSGLVP-DWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFI 374

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           G +LL +Y  CG  S A  +F+ M E++ V+W++M++G+ QN L E+ALILFR+    G 
Sbjct: 375 GISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGF 434

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           + +   + SV+ AC+  +AL  GK+ H    K     ++F A S +DMYAK GC+ ++  
Sbjct: 435 QPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRS 494

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF G++ K++  WN +I+ +  H    E + LFE+M++ G  P+  T+I +L+ CSH G+
Sbjct: 495 VFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGL 554

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           VE+G  YF+ M   H + P + HY+C++D+LGRAG + +A  L+  MP    + +W SLL
Sbjct: 555 VEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLL 614

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
           + CRN+  LE+ +I A++L  +EP N  N++ LSN+YA + RW++V R R++I+D  ++K
Sbjct: 615 SFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQK 674

Query: 473 EKSKSWVEIKGKRNH--------PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           +   SW+E+ GK +         P+  E+     KL ++M K+GYKP T   LHDV++ +
Sbjct: 675 DAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEK 734

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K E L  HSEKLA+ FGL+    G  +RI KNLRIC DCH+  KF S + GRE I+RD  
Sbjct: 735 KIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNK 794

Query: 585 RFHHFTNGSCSCWDFW 600
           RFHHF +G CSC D+W
Sbjct: 795 RFHHFKDGLCSCGDYW 810



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 202/383 (52%), Gaps = 2/383 (0%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++TL   L  CARE     G   H   + +GL+ D   +N L++ YSKCG ++ A+ +F
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+  ++  VSWNT+IG   T G   EA  LF  M  +     +E TV ++L AC     +
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K+LH ++++     +  V    +  YAKCG++  A RVF SM  +   +W++++ G 
Sbjct: 253 RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGC 312

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            QN    +AL L+ +    GL  + FTI S++ A A L +L  GK+VH  + + G   + 
Sbjct: 313 AQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDS 372

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F   SL+ +Y  CG    A  +F G+EEK+ V WN MISG+S++    + +ILF K+   
Sbjct: 373 FIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSD 432

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G  P++   +SVL ACS    +  GK      +K   ++ +VF     ID+  ++G I E
Sbjct: 433 GFQPSDIAVVSVLGACSQQSALRLGKETHCYALKAL-LMEDVFVACSTIDMYAKSGCIKE 491

Query: 392 AYDLILNMPFDATASMWGSLLAS 414
           +  +   +     AS W +++A+
Sbjct: 492 SRSVFDGLKNKDLAS-WNAIIAA 513



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 176/335 (52%), Gaps = 4/335 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +++C        G+V H  +I MGL  D    N LI  Y K G +  A KVF  M
Sbjct: 33  TFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYM 92

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINML--REGKTPYSEFTVSSVLCACAAKRDVF 152
           P R +VSWN+II  ++ NG  ++   + + M+   EG  P    T+ +VL  CA + DV 
Sbjct: 93  PVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP-DIATLVTVLPVCAREVDVQ 151

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              ++H  A+K  +  +V V  +L+D+Y+KCG +++A  +F+    +N V+W++M+ G  
Sbjct: 152 MGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLC 211

Query: 213 QNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
                 EA  LFR  Q+   +E N+ T+ +++ AC  ++ L   K++H    + GF  + 
Sbjct: 212 TKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDE 271

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             A+  V  YAKCG ++ A  VF  +E K V  WN +I G +++    + + L+ +M  +
Sbjct: 272 LVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYS 331

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           GL P+  T  S+L A +H+  +  GK     +++ 
Sbjct: 332 GLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 148/302 (49%), Gaps = 5/302 (1%)

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           +A+ +F+ ++ + +     FT   V+ AC    D    + +H   +K  +  +VFVG AL
Sbjct: 13  DAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNAL 72

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA--LILFRRAQVLGLEY 234
           + +Y K G +  A +VF  MP RN V+W+S+++GF +N   ++   +++   A   GL  
Sbjct: 73  IAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP 132

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           +  T+ +V+  CA    +  G ++H +  K G   ++   +SLVDMY+KCG + +A  +F
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMV 353
                KN V WNTMI G        E   LF +MQ Q  +  NE T +++L AC  I  +
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
              K      ++ H    +    +  +    + G++  A  +  +M    T + W +L+ 
Sbjct: 253 RSLKELHGYSIR-HGFQYDELVANGFVAAYAKCGMLICAERVFYSME-TKTVNSWNALIG 310

Query: 414 SC 415
            C
Sbjct: 311 GC 312



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L +C+++ A   GK  H   +   L  D   +   I+ Y+K G I  +R VFD +  +
Sbjct: 443 SVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNK 502

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + SWN II +Y  +G  +E++ LF  M + G+ P   FT   +L  C+    V E    
Sbjct: 503 DLASWNAIIAAYGVHGDGEESIELFERMRKVGQMP-DGFTFIGILTVCSHAGLVEE---- 557

Query: 158 HVFALKAAMDRNVFVG--------TALLDVYAKCGLISDASRVFESMPER-NEVTWSSMV 208
               LK   +   F G          ++D+  + G + DA R+   MPE+ +   WSS++
Sbjct: 558 ---GLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLL 614

Query: 209 AGFVQN 214
           + F +N
Sbjct: 615 S-FCRN 619


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/575 (39%), Positives = 347/575 (60%), Gaps = 11/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +CA  RA    +  HA  +  GL+     S  +++ Y KCG +  AR VFD M
Sbjct: 121 TLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCM 180

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R  VSWN +I  Y  NG   EA+ALF  M++EG    ++ +V + L AC     + E 
Sbjct: 181 PVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEG-VDVTDASVLAALQACGELGYLDEV 239

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
           +++H   ++  +  NV V  AL+  YAKC     A++VF  +  ++  ++W++M+ GF Q
Sbjct: 240 RRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQ 299

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           NE  E+A  LF R Q+  +  + FT+ SVI A A ++  +Q + +H    +     +++ 
Sbjct: 300 NECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYV 359

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMY+KCG V  A  +F    +++V+ WN MI G+  H      + LFE+M+  G 
Sbjct: 360 LTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGS 419

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PNE T++SVL+ACSH G+V++G+ YF  M K + + P + HY  M+D+LGRAG + EA+
Sbjct: 420 LPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAW 479

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I NMP +   S++G++L +C+ ++N+ELAE +A+ +F + P+    H+LL+NIYA   
Sbjct: 480 SFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANAS 539

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            W++VAR R  +    ++K    S +++K        G  NH    +IY++L KL+EE+K
Sbjct: 540 MWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIK 599

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY P+T+  +HDVED  K +LL  HSEKLA+ +GL+   PG  I+I KNLR+C DCH+
Sbjct: 600 DMGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHN 658

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K  S + GRE I+RD+ RFHHF +G CSC D+W
Sbjct: 659 ATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 193/360 (53%), Gaps = 5/360 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L T  A L+ CA       G+  HA++   GL ++++ S  L N Y KC   + AR+VFD
Sbjct: 16  LRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFD 75

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE--GKTPYSEFTVSSVLCACAAKRD 150
            MP R  V+WN ++  Y  NG    A+   + M  E  G+ P S  T+ SVL ACA  R 
Sbjct: 76  RMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDS-VTLVSVLPACADARA 134

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +  C+++H FAL+A +D  V V TA+LD Y KCG +  A  VF+ MP RN V+W++M+ G
Sbjct: 135 LHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDG 194

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +  N    EA+ LF R    G++    ++ + + AC  L  L + ++VH +L + G  SN
Sbjct: 195 YADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSN 254

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +   ++L+  YAKC     A  VF+ +  +K  + WN MI GF+++    +   LF +MQ
Sbjct: 255 VSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQ 314

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
              + P+  T +SV+ A + I    + +      ++ H +  +V+  + +ID+  + G +
Sbjct: 315 LENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIR-HQLDQDVYVLTALIDMYSKCGRV 373


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 354/589 (60%), Gaps = 12/589 (2%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRG-KVCHAKIIGMGLNNDTLTSNILINFYS 79
           + +  A   A E + L   L  C  ER+ ++  K  H      GL ++ L +N  I  Y+
Sbjct: 296 MQTEDAKMKADEFTILN-VLPVCL-ERSELQSLKELHGYSWRHGLQSNELVANAFIAAYT 353

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
           +CG +  + +VFD M  + + SWN ++  Y  N   ++A+ L++ M   G  P   FT+ 
Sbjct: 354 RCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDP-DWFTIG 412

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           S+L AC+  + +   +++H FAL+  +  + F+G +LL +Y  CG    A  +F+ M  R
Sbjct: 413 SLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR 472

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V+W+ M+AG+ QN L +EA+ LFR+    G++  +  I  V  AC+ L+AL  GK++H
Sbjct: 473 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELH 532

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
               K     ++F +SS++DMYAK GC+  +  +F  + EK+V  WN +I+G+  H R  
Sbjct: 533 CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 592

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LFEKM + GL P++ T+  +L ACSH G+VE G  YF+ M+  HN+ P + HY+C+
Sbjct: 593 EALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCV 652

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGRAG I +A  LI  MP D  + +W SLL+SCR + NL L E  A +L  +EP+  
Sbjct: 653 VDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP 712

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNH--------PRIA 491
            N++L+SN++A + +W++V R R  ++D  ++K+   SW+E+ GK ++        P + 
Sbjct: 713 ENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELE 772

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           E+     +L  ++  +GY P+T   LHD+E+  K  +L  HSEKLA++FGL+    G+P+
Sbjct: 773 EVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPV 832

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+ KNLRICGDCH+  KF S++  R+ +VRD  RFHHF +G CSC D+W
Sbjct: 833 RVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 225/437 (51%), Gaps = 11/437 (2%)

Query: 8   KHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
           ++ F  +SF++         +   +++TL   L  CA E    +G   H   + +GLN +
Sbjct: 179 ENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEE 238

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
            + +N LI+ YSKC  +S A+ +FD+  ++ IVSWN++IG Y    RE++    F  + +
Sbjct: 239 LMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYA---REEDVCRTFYLLQK 295

Query: 128 ----EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
               + K    EFT+ +VL  C  + ++   K+LH ++ +  +  N  V  A +  Y +C
Sbjct: 296 MQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRC 355

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  + RVF+ M  +   +W++++ G+ QN    +AL L+ +    GL+ + FTI S++
Sbjct: 356 GALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 415

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC+ + +L  G+++H    + G   + F   SL+ +Y  CG    A  +F G+E +++V
Sbjct: 416 LACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLV 475

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN MI+G+S++    E + LF +M   G+ P E   + V  ACS +  +  GK      
Sbjct: 476 SWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFA 535

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY-RNLE 422
           +K H +  ++F  S +ID+  + G I  +  +   +     AS W  ++A    + R  E
Sbjct: 536 LKAH-LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS-WNVIIAGYGIHGRGKE 593

Query: 423 LAEIAAKQL-FGMEPDN 438
             E+  K L  G++PD+
Sbjct: 594 ALELFEKMLRLGLKPDD 610



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 172/313 (54%), Gaps = 5/313 (1%)

Query: 40  LQSCARERAPVRGKVCHAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           LQ+C + +    G+  H  +       ND + +  +I  YS CG  S +R VFD++ ++ 
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  WN I+ +YT N   ++A+++F  ++   +     FT+  V+ ACA   D+   + +H
Sbjct: 65  LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 124

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             A K  +  +VFVG AL+ +Y KCGL+ +A +VFE MPERN V+W+S++ GF +N   +
Sbjct: 125 GMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQ 184

Query: 219 EALILFRRAQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           E+   FR   V    +  +  T+ +V+  CAG   + +G  VH +  K G    +   +S
Sbjct: 185 ESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNS 244

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ--QAGLH 334
           L+DMY+KC  + +A  +F   ++KN+V WN+MI G++R         L +KMQ   A + 
Sbjct: 245 LIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMK 304

Query: 335 PNEQTYISVLSAC 347
            +E T ++VL  C
Sbjct: 305 ADEFTILNVLPVC 317


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/636 (37%), Positives = 356/636 (55%), Gaps = 47/636 (7%)

Query: 11  FYYKSFSSSAI---ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
           F  +   + AI   AS  A       S      ++C       R K  H   I  G+ +D
Sbjct: 107 FTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSD 166

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
               N LI+ Y KC  + GAR+VFD++  + +VSW ++   Y   G  +  +A+F  M  
Sbjct: 167 AFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGW 226

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
            G  P S  T+SS+L AC+  +D+   + +H FA++  M  NVFV +AL+ +YA+C  + 
Sbjct: 227 NGVKPNS-VTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVK 285

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF----------------------- 224
            A  VF+ MP R+ V+W+ ++  +  N  Y++ L LF                       
Sbjct: 286 QARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCM 345

Query: 225 ------------RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
                       R+ Q LG + NQ TISS + AC+ L +L  GK+VH  + +     ++ 
Sbjct: 346 ENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLT 405

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++LV MYAKCG +  +  VF  I  K+VV WNTMI   + H    EV++LFE M Q+G
Sbjct: 406 TMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSG 465

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T+  VLS CSH  +VE+G   F+ M + H V P+  HY+CM+D+  RAG +HEA
Sbjct: 466 IKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEA 525

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y+ I  MP + TAS WG+LL +CR Y+N+ELA+I+A +LF +EP+N GN++ L NI    
Sbjct: 526 YEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTA 585

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
           + W E + AR L+++  + K    SW+++         G +N+    +IY+ L++L E+M
Sbjct: 586 KLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKM 645

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K  GYKP+T++ L D++   K E L  HSEKLA+ FG++ L     IR+ KNLRICGDCH
Sbjct: 646 KSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCH 705

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + +K+ S++ G   IVRD  RFHHF NG+CSC D W
Sbjct: 706 NAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 156/298 (52%), Gaps = 5/298 (1%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A+++FD +PQ    + +T+I ++TT G   EA+ L+ ++   G  P++   ++ V  AC 
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLT-VAKACG 143

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           A  D    K++H  A++  M  + F+G AL+  Y KC  +  A RVF+ +  ++ V+W+S
Sbjct: 144 ASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTS 203

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M + +V   L    L +F      G++ N  T+SS++ AC+ L  L  G+ +H    + G
Sbjct: 204 MSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHG 263

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
              N+F  S+LV +YA+C  V  A  VF  +  ++VV WN +++ +  +    + + LF 
Sbjct: 264 MIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFS 323

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKG----KSYFDLMVKQHNVLPNVFHYSCMI 380
           +M   G+  +E T+ +V+  C   G  EK     +   +L  K + +  + F  +C I
Sbjct: 324 QMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSI 381



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 6/289 (2%)

Query: 155 KQLHVFALKAAMDRNV--FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           KQL    +  ++  N+   +G  LL      G    A ++F+++P+ +  T S++++ F 
Sbjct: 49  KQLTSTKVAPSVPTNIPSHLGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFT 108

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
              L  EA+ L+   +  G++ +     +V  AC       + K+VH    + G  S+ F
Sbjct: 109 TRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAF 168

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+  Y KC CV  A  VF  +  K+VV W +M S +         + +F +M   G
Sbjct: 169 LGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNG 228

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T  S+L ACS +  ++ G++     V+ H ++ NVF  S ++ +  R   + +A
Sbjct: 229 VKPNSVTLSSILPACSELKDLKSGRAIHGFAVR-HGMIENVFVCSALVSLYARCLSVKQA 287

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLE--LAEIAAKQLFGMEPDNA 439
             +   MP     S W  +L +    R  +  LA  +     G+E D A
Sbjct: 288 RLVFDLMPHRDVVS-WNGVLTAYFTNREYDKGLALFSQMSSKGVEADEA 335


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 345/587 (58%), Gaps = 21/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+ + L +C+       GK  HA  +  G L+ ++   + L++ Y  C  +   R+VFD 
Sbjct: 217 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 276

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R I  WN +I  Y+ N  ++EA+ LFI M        +  T++ V+ AC        
Sbjct: 277 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H F +K  +DR+ FV   L+D+Y++ G I  A R+F  M +R+ VTW++M+ G+V 
Sbjct: 337 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 396

Query: 214 NELYEEALILFRRAQVL-----------GLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +E +E+AL+L  + Q L            L+ N  T+ +++ +CA L+AL +GK++HA  
Sbjct: 397 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 456

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K    +++   S+LVDMYAKCGC+  +  VF  I +KNV+ WN +I  +  H    E +
Sbjct: 457 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 516

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            L   M   G+ PNE T+ISV +ACSH GMV++G   F +M   + V P+  HY+C++D+
Sbjct: 517 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 576

Query: 383 LGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG I EAY L+  MP D   A  W SLL + R + NLE+ EIAA+ L  +EP+ A +
Sbjct: 577 LGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASH 636

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEI 493
           ++LL+NIY++   W++    R+ +++  V+KE   SW+E        + G  +HP+  ++
Sbjct: 637 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 696

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
              LE L E M+K GY P+T   LH+VE+  K+ LL  HSEKLA+ FG++   PG  IR+
Sbjct: 697 SGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRV 756

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLR+C DCH   KF S+I  RE I+RD+ RFH F NG+CSC D+W
Sbjct: 757 AKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 200/382 (52%), Gaps = 10/382 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQ 96
           A L++ A  +    GK  HA +   G   D++T +N L+N Y KCG      KVFD + +
Sbjct: 15  ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISE 74

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVFE 153
           R  VSWN++I S  +  + + A+  F  ML E   P S FT+ SV+ AC+       +  
Sbjct: 75  RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEP-SSFTLVSVVTACSNLPMPEGLMM 133

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H + L+   + N F+   L+ +Y K G ++ +  +  S   R+ VTW+++++   Q
Sbjct: 134 GKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 192

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMF 272
           NE   EAL   R   + G+E ++FTISSV+ AC+ L  L  GK++HA   K G    N F
Sbjct: 193 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 252

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-A 331
             S+LVDMY  C  V+    VF G+ ++ + LWN MI+G+S++    E ++LF  M++ A
Sbjct: 253 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 312

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL  N  T   V+ AC   G   + ++    +VK+  +  + F  + ++D+  R G I  
Sbjct: 313 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDI 371

Query: 392 AYDLILNMPFDATASMWGSLLA 413
           A  +   M  D     W +++ 
Sbjct: 372 AMRIFGKME-DRDLVTWNTMIT 392



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 155/283 (54%), Gaps = 20/283 (7%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           SA   AN+T   T+   + +C R  A  R +  H  ++  GL+ D    N L++ YS+ G
Sbjct: 311 SAGLLANST---TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG 367

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM------LREGKTPYS-- 134
            I  A ++F +M  R +V+WNT+I  Y  +   ++A+ L   M      + +G +  S  
Sbjct: 368 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 427

Query: 135 --EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
               T+ ++L +CAA   + + K++H +A+K  +  +V VG+AL+D+YAKCG +  + +V
Sbjct: 428 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 487

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ +P++N +TW+ ++  +  +   +EA+ L R   V G++ N+ T  SV  AC+    +
Sbjct: 488 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 547

Query: 253 IQGKQVHAVLCKTGFG----SNMFAASSLVDMYAKCGCVVDAY 291
            +G ++  V+ K  +G    S+ +A   +VD+  + G + +AY
Sbjct: 548 DEGLRIFYVM-KPDYGVEPSSDHYAC--VVDLLGRAGRIKEAY 587



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 9/215 (4%)

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCV 287
           VLG++ + +   +++ A A L  +  GKQ+HA + K G+G  ++  A++LV++Y KCG  
Sbjct: 3   VLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDF 62

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
              Y VF  I E+N V WN++IS      +    +  F  M    + P+  T +SV++AC
Sbjct: 63  GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC 122

Query: 348 SHIGMVEK---GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           S++ M E    GK      +++  +  N F  + ++ + G+ G +  +  ++L       
Sbjct: 123 SNLPMPEGLMMGKQVHAYGLRKGEL--NSFIINTLVAMYGKLGKLASS-KVLLGSFGGRD 179

Query: 405 ASMWGSLLAS-CRNYRNLELAEIAAKQLF-GMEPD 437
              W ++L+S C+N + LE  E   + +  G+EPD
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/639 (35%), Positives = 366/639 (57%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L SCA   +   GK  H+ ++ +GL+     +N L+N Y+K G +  A+ VFD M
Sbjct: 109 TLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRM 168

Query: 95  -------------------------------PQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                           +R IVSWN++I     +G + EA+  F 
Sbjct: 169 KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFS 228

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG---------- 173
           ++L++       F+++S L ACA    +   KQ+H + ++   D +  VG          
Sbjct: 229 SILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKS 288

Query: 174 -----------------------TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                                  TALL+ Y K G I+ A ++F S+ + + V W++M+ G
Sbjct: 289 GGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVG 348

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +VQN L  +A+ +F+     G   N FT+++++ A + + +L  GKQ+HA   ++G   +
Sbjct: 349 YVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALS 408

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
               ++L  MYAK G +  A  VF+ + + ++ V W +MI   ++H    E + LFE+M 
Sbjct: 409 PSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQML 468

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ P+  TY+ VLSAC+H G+VE+G+SYFDLM   H + P + HY+CM+D+ GRAGL+
Sbjct: 469 TLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLL 528

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EAY  + NMP +     WGSLL+SC+ Y+N++LA++AA++L  +EP+N+G +  L+N+Y
Sbjct: 529 QEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVY 588

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           ++  +W++ A+ RKL++   VKKE+  SWV+I+ K +        HP+  EIY  ++K+ 
Sbjct: 589 SSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIW 648

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           +E+KK+G+ P+TE  LHD+E   K ++L +HSEKLA+ FG++       +RIMKNLR+C 
Sbjct: 649 KEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCN 708

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +KF S++  RE IVRD  RFHHF +GSCSC D+W
Sbjct: 709 DCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 210/439 (47%), Gaps = 71/439 (16%)

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
           T + N +++ Y+K G +  A +VFD +P R  VSW TII  Y   GR ++A+ +F++M++
Sbjct: 41  TFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK 100

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----- 182
           +   P ++FT+++VL +CAA       K++H F +K  +   V V  +LL++YAK     
Sbjct: 101 DKVLP-TQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLK 159

Query: 183 --------------------------CGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
                                     CG +  A   FE + ER+ V+W+SM+AG  Q+  
Sbjct: 160 MAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGF 219

Query: 217 YEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
             EAL  F    +   L+ ++F+++S + ACA L  L  GKQ+H  + +T F ++    +
Sbjct: 220 DNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN 279

Query: 276 SLVDMYAKCGCV-----------------------VDAYF----------VFSGIEEKNV 302
           +L+ MYAK G V                       ++ Y           +F+ +++ +V
Sbjct: 280 ALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDV 339

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V W  MI G+ ++  + + + +F+ M   G  PN  T  ++LSA S +  +  GK     
Sbjct: 340 VAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHAS 399

Query: 363 MVKQHNVL-PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL-LASCRNYRN 420
            ++    L P+V   + +  +  +AG I+ A  +   +  +     W S+ +A  ++   
Sbjct: 400 AIRSGEALSPSV--GNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLG 457

Query: 421 LELAEIAAKQL-FGMEPDN 438
            E  E+  + L  G++PD+
Sbjct: 458 EEAIELFEQMLTLGIKPDH 476



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 132/260 (50%), Gaps = 7/260 (2%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +  F    +L  YAK G +  A +VF+ +P R+ V+W++++ G+ Q   +E+A+ +F   
Sbjct: 39  KTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDM 98

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
               +   QFT+++V+ +CA   +   GK+VH+ + K G  + +  A+SL++MYAK G +
Sbjct: 99  VKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDL 158

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  VF  ++ +N   WN MIS      R    +  FE + +  +     ++ S+++ C
Sbjct: 159 KMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDI----VSWNSMIAGC 214

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI---LGRAGLIHEAYDLILNMPFDAT 404
           +  G   +   +F  ++K  ++ P+ F  +  +     L +     + +  I+   FDA+
Sbjct: 215 NQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDAS 274

Query: 405 ASMWGSLLASCRNYRNLELA 424
            ++  +L++       +E+A
Sbjct: 275 GAVGNALISMYAKSGGVEIA 294



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 14/171 (8%)

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + K G   +++  ++L+++YAK G  +DA+ +F+ +  K    WNT++SG+++  +    
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGK---- 56

Query: 322 MILFEKMQQA-GLHP--NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
               EK  Q   L P  +  ++ +++   + +G  E     F  MVK   VLP  F  + 
Sbjct: 57  ---LEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD-KVLPTQFTLTN 112

Query: 379 MI---DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           ++      G  G+  + +  ++ +   A   +  SLL       +L++A++
Sbjct: 113 VLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKV 163


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 345/587 (58%), Gaps = 21/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+ + L +C+       GK  HA  +  G L+ ++   + L++ Y  C  +   R+VFD 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R I  WN +I  Y+ N  ++EA+ LFI M        +  T++ V+ AC        
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H F +K  +DR+ FV   L+D+Y++ G I  A R+F  M +R+ VTW++M+ G+V 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 214 NELYEEALILFRRAQVL-----------GLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +E +E+AL+L  + Q L            L+ N  T+ +++ +CA L+AL +GK++HA  
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K    +++   S+LVDMYAKCGC+  +  VF  I +KNV+ WN +I  +  H    E +
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            L   M   G+ PNE T+ISV +ACSH GMV++G   F +M   + V P+  HY+C++D+
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 663

Query: 383 LGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG I EAY L+  MP D   A  W SLL + R + NLE+ EIAA+ L  +EP+ A +
Sbjct: 664 LGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASH 723

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEI 493
           ++LL+NIY++   W++    R+ +++  V+KE   SW+E        + G  +HP+  ++
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
              LE L E M+K GY P+T   LH+VE+  K+ LL  HSEKLA+ FG++   PG  IR+
Sbjct: 784 SGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRV 843

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLR+C DCH   KF S+I  RE I+RD+ RFH F NG+CSC D+W
Sbjct: 844 AKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 200/382 (52%), Gaps = 10/382 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQ 96
           A L++ A  +    GK  HA +   G   D++T +N L+N Y KCG      KVFD + +
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISE 161

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVFE 153
           R  VSWN++I S  +  + + A+  F  ML E   P S FT+ SV+ AC+       +  
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEP-SSFTLVSVVTACSNLPMPEGLMM 220

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H + L+   + N F+   L+ +Y K G ++ +  +  S   R+ VTW+++++   Q
Sbjct: 221 GKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMF 272
           NE   EAL   R   + G+E ++FTISSV+ AC+ L  L  GK++HA   K G    N F
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-A 331
             S+LVDMY  C  V+    VF G+ ++ + LWN MI+G+S++    E ++LF  M++ A
Sbjct: 340 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 399

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL  N  T   V+ AC   G   + ++    +VK+  +  + F  + ++D+  R G I  
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDI 458

Query: 392 AYDLILNMPFDATASMWGSLLA 413
           A  +   M  D     W +++ 
Sbjct: 459 AMRIFGKME-DRDLVTWNTMIT 479



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 155/283 (54%), Gaps = 20/283 (7%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           SA   AN+T   T+   + +C R  A  R +  H  ++  GL+ D    N L++ YS+ G
Sbjct: 398 SAGLLANST---TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG 454

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM------LREGKTPYS-- 134
            I  A ++F +M  R +V+WNT+I  Y  +   ++A+ L   M      + +G +  S  
Sbjct: 455 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514

Query: 135 --EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
               T+ ++L +CAA   + + K++H +A+K  +  +V VG+AL+D+YAKCG +  + +V
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 574

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ +P++N +TW+ ++  +  +   +EA+ L R   V G++ N+ T  SV  AC+    +
Sbjct: 575 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634

Query: 253 IQGKQVHAVLCKTGFG----SNMFAASSLVDMYAKCGCVVDAY 291
            +G ++  V+ K  +G    S+ +A   +VD+  + G + +AY
Sbjct: 635 DEGLRIFYVM-KPDYGVEPSSDHYAC--VVDLLGRAGRIKEAY 674



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 10/258 (3%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           +S A  +F S   R+   W  ++   V++ L  EA++ +    VLG++ + +   +++ A
Sbjct: 48  VSGAPSIFISQ-SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKA 106

Query: 246 CAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            A L  +  GKQ+HA + K G+G  ++  A++LV++Y KCG     Y VF  I E+N V 
Sbjct: 107 VADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS 166

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK---GKSYFD 361
           WN++IS      +    +  F  M    + P+  T +SV++ACS++ M E    GK    
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRN 420
             +++  +  N F  + ++ + G+ G +  +  ++L          W ++L+S C+N + 
Sbjct: 227 YGLRKGEL--NSFIINTLVAMYGKLGKLASS-KVLLGSFGGRDLVTWNTVLSSLCQNEQL 283

Query: 421 LELAEIAAKQLF-GMEPD 437
           LE  E   + +  G+EPD
Sbjct: 284 LEALEYLREMVLEGVEPD 301


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 11/574 (1%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
            A L +C  +RA   G+  HA +I       T     L+ FY KC  +  ARKV DEMP+
Sbjct: 56  DALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPE 115

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           + +VSW  +I  Y+  G   EA+ +F  M+R    P +EFT ++VL +C     +   KQ
Sbjct: 116 KNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKP-NEFTFATVLTSCIRASGLGLGKQ 174

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H   +K   D ++FVG++LLD+YAK G I +A  +FE +PER+ V+ ++++AG+ Q  L
Sbjct: 175 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGL 234

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            EEAL +F R    G+  N  T +S++ A +GLA L  GKQ H  + +          +S
Sbjct: 235 DEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 294

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHP 335
           L+DMY+KCG +  A  +F  + E+  + WN M+ G+S+H    EV+ LF  M+ +  + P
Sbjct: 295 LIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 354

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           +  T ++VLS CSH  M + G + FD MV  ++   P   HY C++D+LGRAG I EA++
Sbjct: 355 DAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFE 414

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP   TA + GSLL +CR + ++++ E   ++L  +EP+NAGN+++LSN+YA+  R
Sbjct: 415 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGR 474

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W +V   R ++    V KE  +SW++ +          R HPR  E+ +K++++  +MK+
Sbjct: 475 WADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 534

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L+DV++ +K+++L+ HSEKLALTFGL+    G+PIR+ KNLRIC DCH+F
Sbjct: 535 AGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNF 594

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S++  RE  +RD NRFH   +G CSC D+W
Sbjct: 595 AKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 4/210 (1%)

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
           R F S P    +     ++    N   +EAL+      +LG E       +++ AC    
Sbjct: 10  RSFSSSPTNYVLQTILPISQLCSNGRLQEALL---EMAMLGPEMGFHGYDALLNACLDKR 66

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           AL  G++VHA + KT +    +  + L+  Y KC C+ DA  V   + EKNVV W  MIS
Sbjct: 67  ALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 126

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
            +S+   S E + +F +M ++   PNE T+ +VL++C     +  GK    L+VK  N  
Sbjct: 127 RYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW-NYD 185

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            ++F  S ++D+  +AG I EA ++   +P
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLP 215


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/570 (41%), Positives = 357/570 (62%), Gaps = 12/570 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L S AR R+ ++G   H  ++  GL+   L +N LINFYSK  L   +R+ F++ PQ+  
Sbjct: 22  LLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSS 81

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLH 158
            +W++II  +  N     ++     M+     P      S+   CA  ++ D+   + +H
Sbjct: 82  TTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDI--GRSVH 139

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             ++K   D +VFVG++L+D+YAKCG I  A ++F+ MP+RN VTWS M+ G+ Q    E
Sbjct: 140 CLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENE 199

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL LF+ A    L  N ++ SSVI  CA    L  G+Q+H +  K+ F S+ F  SSLV
Sbjct: 200 EALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLV 259

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            +Y+KCG    AY VF+ +  KN+ +WN M+  +++H+ + +V+ LF++M+ +G+ PN  
Sbjct: 260 SLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFI 319

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+++VL+ACSH G+V++G+ YFD M K+  + P   HY+ ++D+LGRAG + EA ++I N
Sbjct: 320 TFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITN 378

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP D T S+WG+LL SC  ++N ELA  AA ++F + P ++G H+ LSN YAA+ R+E+ 
Sbjct: 379 MPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDA 438

Query: 459 ARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYK 510
           A+ARKL+RD   KKE   SWVE +        G+R H +  EIY KL +L EEM+K GY 
Sbjct: 439 AKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYI 498

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
            +T + L +V+   K + + +HSE+LA+ FGL+      PIR+MKNLR+CGDCH+ +KF 
Sbjct: 499 ADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFM 558

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S    R  IVRD NRFH F +G CSC D+W
Sbjct: 559 SVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 161/302 (53%), Gaps = 4/302 (1%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +  +L + A  R   +  QLH + +K+ +     V   L++ Y+K  L  D+ R FE  P
Sbjct: 18  ICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           +++  TWSS+++ F QNEL   +L   ++     L  +   + S   +CA L+    G+ 
Sbjct: 78  QKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRS 137

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH +  KTG+ +++F  SSLVDMYAKCG +V A  +F  + ++NVV W+ M+ G+++   
Sbjct: 138 VHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGE 197

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           + E + LF++     L  N+ ++ SV+S C++  ++E G+    L +K      + F  S
Sbjct: 198 NEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDS-SSFVGS 256

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-ASCRNYRNLELAEIAAK-QLFGME 435
            ++ +  + G+   AY +   +P      +W ++L A  ++    ++ E+  + +L GM+
Sbjct: 257 SLVSLYSKCGVPEGAYQVFNEVPV-KNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMK 315

Query: 436 PD 437
           P+
Sbjct: 316 PN 317



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
           YNQ  I  ++ + A   + I+G Q+H  + K+G       A++L++ Y+K     D+   
Sbjct: 15  YNQ--ICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRA 72

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F    +K+   W+++IS F+++      +   +KM    L P++    S   +C+ +   
Sbjct: 73  FEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRC 132

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI---HEAYD 394
           + G+S   L +K      +VF  S ++D+  + G I    + +D
Sbjct: 133 DIGRSVHCLSMKT-GYDADVFVGSSLVDMYAKCGEIVYARKMFD 175


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 345/587 (58%), Gaps = 21/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+ + L +C+       GK  HA  +  G L+ ++   + L++ Y  C  +   R+VFD 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R I  WN +I  Y+ N  ++EA+ LFI M        +  T++ V+ AC        
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H F +K  +DR+ FV   L+D+Y++ G I  A R+F  M +R+ VTW++M+ G+V 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 214 NELYEEALILFRRAQVL-----------GLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +E +E+AL+L  + Q L            L+ N  T+ +++ +CA L+AL +GK++HA  
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K    +++   S+LVDMYAKCGC+  +  VF  I +KNV+ WN +I  +  H    E +
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            L   M   G+ PNE T+ISV +ACSH GMV++G   F +M   + V P+  HY+C++D+
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 663

Query: 383 LGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG I EAY L+  MP D   A  W SLL + R + NLE+ EIAA+ L  +EP+ A +
Sbjct: 664 LGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASH 723

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEI 493
           ++LL+NIY++   W++    R+ +++  V+KE   SW+E        + G  +HP+  ++
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
              LE L E M+K GY P+T   LH+VE+  K+ LL  HSEKLA+ FG++   PG  IR+
Sbjct: 784 SGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRV 843

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLR+C DCH   KF S+I  RE I+RD+ RFH F NG+CSC D+W
Sbjct: 844 AKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 200/382 (52%), Gaps = 10/382 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQ 96
           A L++ A  +    GK  HA +   G   D++T +N L+N Y KCG      KVFD + +
Sbjct: 102 ALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISE 161

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVFE 153
           R  VSWN++I S  +  + + A+  F  ML E   P S FT+ SV+ AC+       +  
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEP-SSFTLVSVVTACSNLPMPEGLMM 220

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H + L+   + N F+   L+ +Y K G ++ +  +  S   R+ VTW+++++   Q
Sbjct: 221 GKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMF 272
           NE   EAL   R   + G+E ++FTISSV+ AC+ L  L  GK++HA   K G    N F
Sbjct: 280 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-A 331
             S+LVDMY  C  V+    VF G+ ++ + LWN MI+G+S++    E ++LF  M++ A
Sbjct: 340 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 399

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL  N  T   V+ AC   G   + ++    +VK+  +  + F  + ++D+  R G I  
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDI 458

Query: 392 AYDLILNMPFDATASMWGSLLA 413
           A  +   M  D     W +++ 
Sbjct: 459 AMRIFGKME-DRDLVTWNTMIT 479



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 155/283 (54%), Gaps = 20/283 (7%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           SA   AN+T   T+   + +C R  A  R +  H  ++  GL+ D    N L++ YS+ G
Sbjct: 398 SAGLLANST---TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG 454

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM------LREGKTPYS-- 134
            I  A ++F +M  R +V+WNT+I  Y  +   ++A+ L   M      + +G +  S  
Sbjct: 455 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514

Query: 135 --EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
               T+ ++L +CAA   + + K++H +A+K  +  +V VG+AL+D+YAKCG +  + +V
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 574

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ +P++N +TW+ ++  +  +   +EA+ L R   V G++ N+ T  SV  AC+    +
Sbjct: 575 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634

Query: 253 IQGKQVHAVLCKTGFG----SNMFAASSLVDMYAKCGCVVDAY 291
            +G ++  V+ K  +G    S+ +A   +VD+  + G + +AY
Sbjct: 635 DEGLRIFYVM-KPDYGVEPSSDHYAC--VVDLLGRAGRIKEAY 674



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 10/258 (3%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           +S A  +F S   R+   W  ++   V++ L  EA++ +    VLG++ + +   +++ A
Sbjct: 48  VSGAPSIFISQ-SRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKA 106

Query: 246 CAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            A L  +  GKQ+HA + K G+G  ++  A++LV++Y KCG     Y VF  I E+N V 
Sbjct: 107 VADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS 166

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK---GKSYFD 361
           WN++IS      +    +  F  M    + P+  T +SV++ACS++ M E    GK    
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRN 420
             +++  +  N F  + ++ + G+ G +  +  ++L          W ++L+S C+N + 
Sbjct: 227 YGLRKGEL--NSFIINTLVAMYGKLGKLASS-KVLLGSFGGRDLVTWNTVLSSLCQNEQL 283

Query: 421 LELAEIAAKQLF-GMEPD 437
           LE  E   + +  G+EPD
Sbjct: 284 LEALEYLREMVLEGVEPD 301


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/588 (38%), Positives = 343/588 (58%), Gaps = 40/588 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV----------- 100
           G   H +++ +G        + L++ Y+K GLI  AR+VF EM  + +V           
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 101 --------------------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                               +W T++   T NG + EA+ +F  M  EG     ++T  S
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG-VGIDQYTFGS 283

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC A   + E KQ+H +  +   + NVFVG+AL+D+Y+KC  I  A  VF  M  RN
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W++M+ G+ QN   EEA+  F   Q+ G++ + FT+ SVI +CA LA+L +G Q H 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +   +G    +  +++LV +Y KCG + DA+ +F  +   + V W  +++G+++  ++ E
Sbjct: 404 LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKE 463

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM   GL P+  T+I VLSACS  G+VEKG  YFD M K H ++P   HY+CMI
Sbjct: 464 TIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI 523

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+  R+G   EA + I  MP    A  W +LL+SCR   N+E+ + AA+ L   +P N  
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
           +++LL +++AA  +W EVA  R+ +RD +VKKE   SW++ K K        ++HP  + 
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSR 643

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY KLE L  +M + GYKP+    LHDV D+ K  ++ HHSEKLA+ FGL+ +   +PIR
Sbjct: 644 IYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIR 703

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I+KNLR+C DCH+  KF S+I GR+ +VRD  RFH F++G+CSC DFW
Sbjct: 704 IVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 211/407 (51%), Gaps = 35/407 (8%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + +  T N L++  +   L+    ++F  MP+R  VS+N +I  +++ G    +V L+  
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           +LRE     +  T+S+++   +A  D      +H   L+       FVG+ L+D+YAK G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 185 LISDASRVFESMP-------------------------------ERNEVTWSSMVAGFVQ 213
           LI DA RVF+ M                                +R+ +TW++MV G  Q
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L  EAL +FRR +  G+  +Q+T  S++ AC  LAAL +GKQ+HA + +T +  N+F 
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            S+LVDMY+KC  +  A  VF  +  +N++ W  MI G+ ++A S E +  F +MQ  G+
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T  SV+S+C+++  +E+G + F  +     ++  +   + ++ + G+ G I +A+
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 394 DLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAKQLF-GMEPDN 438
            L   M F    S W +L+     + +  E  ++  K L  G++PD 
Sbjct: 435 RLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLANGLKPDG 480



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 146/323 (45%), Gaps = 34/323 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C    A   GK  HA I      ++    + L++ YSKC  I  A  VF  M
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R I+SW  +I  Y  N   +EAV  F  M  +G  P  +FT+ SV+ +CA    + E 
Sbjct: 340 TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP-DDFTLGSVISSCANLASLEEG 398

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q H  AL + + R + V  AL+ +Y KCG I DA R+F+ M   ++V+W+++V G+ Q 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E + LF +    GL+ +  T   V+ AC+    + +G       C   +  +M   
Sbjct: 459 GKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKG-------CD--YFDSMQKD 509

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             +V +     C++D Y                     SR  R  E     ++M  +   
Sbjct: 510 HGIVPIDDHYTCMIDLY---------------------SRSGRFKEAEEFIKQMPHS--- 545

Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
           P+   + ++LS+C   G +E GK
Sbjct: 546 PDAFGWATLLSSCRLRGNMEIGK 568



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 71/336 (21%)

Query: 170 VFVGTALLDVYAKCGLISDASRVFES-------------------------------MPE 198
            F+   LL  YAK G ++ A RVF+                                MPE
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           R+ V++++++ GF        ++ L+R   +   +   + T+S++I   + L+    G  
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL------------- 304
           VH  + + GFG+  F  S LVDMYAK G + DA  VF  +E K VV+             
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 305 ------------------WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
                             W TM++G +++   +E + +F +M+  G+  ++ T+ S+L+A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP----FD 402
           C  +  +E+GK     + +      NVF  S ++D+  +   I  A  +   M       
Sbjct: 288 CGALAALEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
            TA + G    +C        +E+   Q+ G++PD+
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEM---QMDGIKPDD 379


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 348/583 (59%), Gaps = 13/583 (2%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  TL + L  C          V H   +  GL+ +    N LI+ Y K G+++ A  
Sbjct: 165 AGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHW 224

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF  M  R +V+WN+II +    G+   AV LF  M+  G  P    T+ S+  A A   
Sbjct: 225 VFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCP-DVLTLVSLASAVAQCG 283

Query: 150 DVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           D    K +H +  +   D  ++  G A++D+YAK   I  A +VF+++P+R+ V+W++++
Sbjct: 284 DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLI 343

Query: 209 AGFVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            G++QN L  EA+ ++       GL+  Q T  SV+ A + L  L QG ++HA+  KTG 
Sbjct: 344 TGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGL 403

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             +++  + L+D+YAKCG +V+A F+F  +  ++   WN +I+G   H    + + LF +
Sbjct: 404 NLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQ 463

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQQ  + P+  T++S+L+ACSH G+V++G+S+FDLM   + ++P   HY+CM+D+LGRAG
Sbjct: 464 MQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAG 523

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            + EA++ I +MP    +++WG+LL +CR + N+E+ ++A++ LF ++P+N G ++L+SN
Sbjct: 524 QLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSN 583

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK----------RNHPRIAEIYSKL 497
           +YA   +W+ V   R L+R   ++K    S +E+KG             HP+  EI   L
Sbjct: 584 MYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGL 643

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
             L+ +MK  GY P+    L DVE+  K+++L +HSE+LA+ FG++   PG P+ I KNL
Sbjct: 644 HDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNL 703

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+CGDCHS  K+ S+I  RE IVRD NRFHHF +G CSC DFW
Sbjct: 704 RVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 197/370 (53%), Gaps = 6/370 (1%)

Query: 48  APVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
            P      HA  + +GL + +   S  L++ Y + G ++ A +VFDEMP+R + +WN ++
Sbjct: 81  GPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAML 140

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
                N R  +AV L   M+ EG       T+SSVL  C    D      +HV+A+K  +
Sbjct: 141 SGLCRNTRAADAVTLLGRMVGEG-VAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGL 199

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
              +FV  AL+DVY K G++++A  VF  M  R+ VTW+S+++   Q      A+ LF  
Sbjct: 200 SGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHG 259

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCG 285
               G+  +  T+ S+  A A     +  K VH  + + G+   ++ A +++VDMYAK  
Sbjct: 260 MMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMS 319

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVL 344
            +  A  VF  + +++VV WNT+I+G+ ++  + E + ++  M    GL P + T++SVL
Sbjct: 320 KIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVL 379

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            A S++G +++G     L +K    L +V+  +C+ID+  + G + EA  L  +MP  +T
Sbjct: 380 PAYSYLGGLQQGMRMHALSIKTGLNL-DVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRST 438

Query: 405 ASMWGSLLAS 414
              W +++A 
Sbjct: 439 GP-WNAIIAG 447


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 338/572 (59%), Gaps = 45/572 (7%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L +C++     RGK  H +I+   L       N L N Y+KCG +  AR +FD M  +
Sbjct: 160 SVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNK 219

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSWN++I  Y  NG+ +    LF  M   G  P  + T+S++L A             
Sbjct: 220 NVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMP-DQVTISNILSA------------- 265

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
                                 Y +CG I +A + F  + E+++V W++M+ G  QN   
Sbjct: 266 ----------------------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKE 303

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           E+AL+LFR   +  +  + FTISSV+ +CA LA+L QG+ VH      G   ++  +S+L
Sbjct: 304 EDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSAL 363

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           VDMY+KCG   DA+ VF  +  +NV+ WN+MI G++++ + +E + L+E+M    L P+ 
Sbjct: 364 VDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDN 423

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VLSAC H G+VE+G+ YF  + K H + P   HYSCMI++LGRAG + +A DLI 
Sbjct: 424 ITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIK 483

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +M F+    +W +LL+ CR   ++   E+AA+ LF ++P NAG +++LSNIYAA  RW++
Sbjct: 484 SMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKD 543

Query: 458 VARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGY 509
           VA  R L++++++KK  + SW+EI  +        R H    +IY +L +L++++++ G+
Sbjct: 544 VAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGF 603

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG-VPIRIMKNLRICGDCHSFMK 568
            P+T   LHDV +  K + + +HSEKLAL F L+    G  PIRIMKN+R+CGDCH FMK
Sbjct: 604 TPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMK 663

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           F S+I  R  I+RD+NRFHHF  G CSC D W
Sbjct: 664 FVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 186/376 (49%), Gaps = 44/376 (11%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D  + N +++ YSK G +   R VFD+M     VS+NT+I  ++ NG   +A+  F+ M 
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            EG    +++T  SVL AC+   D+   KQ+H   +  ++  +VFV  AL ++YAKCG +
Sbjct: 148 EEGFES-TDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGAL 206

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  +F+ M  +N V+W+SM++G++QN   E    LF   Q  GL  +Q TIS+++ A 
Sbjct: 207 DQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA- 265

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
                                             Y +CG + +A   F  I+EK+ V W 
Sbjct: 266 ----------------------------------YFQCGYIDEACKTFREIKEKDKVCWT 291

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV-- 364
           TM+ G +++ +  + ++LF +M    + P+  T  SV+S+C+ +  + +G++     V  
Sbjct: 292 TMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIF 351

Query: 365 -KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
              H++L +    S ++D+  + G   +A+ +   M      S    +L   +N ++LE 
Sbjct: 352 GVDHDLLVS----SALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEA 407

Query: 424 AEIAAKQLF-GMEPDN 438
             +  + L   ++PDN
Sbjct: 408 LALYEEMLHENLKPDN 423



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 112/193 (58%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           R+VF   A+L  Y+K G + D   VF+ M   + V++++++AGF  N    +AL  F R 
Sbjct: 87  RDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRM 146

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q  G E   +T  SV+ AC+ L  + +GKQ+H  +  T  G ++F  ++L +MYAKCG +
Sbjct: 147 QEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGAL 206

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A ++F  +  KNVV WN+MISG+ ++ +      LF +MQ +GL P++ T  ++LSA 
Sbjct: 207 DQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAY 266

Query: 348 SHIGMVEKGKSYF 360
              G +++    F
Sbjct: 267 FQCGYIDEACKTF 279



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 5/178 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + + SCAR  +  +G+  H K +  G+++D L S+ L++ YSKCG  + A  VF  M
Sbjct: 324 TISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRM 383

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++SWN++I  Y  NG++ EA+AL+  ML E   P    T   VL AC     + E 
Sbjct: 384 LTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKP-DNITFVGVLSAC-MHAGLVER 441

Query: 155 KQLHVFALKA--AMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            Q + +++     M+      + ++++  + G +  A  + +SM  E N + WS++++
Sbjct: 442 GQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 47/249 (18%)

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS------------------ 310
           ++ F  + L+ +YAK G + DA  +F  +  ++V  WN M+S                  
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 311 -------------GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
                        GFS +  S + +  F +MQ+ G    + T++SVL ACS +  +++GK
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGK 175

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
                +V   ++  +VF ++ + ++  + G + +A  L   M      S W S+++    
Sbjct: 176 QIHGRIVAT-SLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVS-WNSMISG--- 230

Query: 418 YRNLELAEIAAK-----QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
           Y      E   K     Q  G+ PD     + +SNI +A  +   +  A K  R  E+K+
Sbjct: 231 YLQNGQPETCTKLFCEMQSSGLMPD----QVTISNILSAYFQCGYIDEACKTFR--EIKE 284

Query: 473 EKSKSWVEI 481
           +    W  +
Sbjct: 285 KDKVCWTTM 293


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 353/579 (60%), Gaps = 12/579 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST+   L + A+  +   GK  H   +  G   D +    +++ Y KC  I  AR++FD 
Sbjct: 221 STIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDM 280

Query: 94  MP-QRCIVSWNTIIGSYTTNGREQEAVALFIN--MLREGKTPYSEFTVSSVLCACAAKRD 150
           M   +  V+W+ ++G+Y      +EA+ LF    ML++     S  T+++V+  CA   D
Sbjct: 281 MGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTD 340

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +     LH +A+K+    ++ VG  LL +YAKCG+I+ A R F  M  R+ V+++++++G
Sbjct: 341 LSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISG 400

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +VQN   EE L +F   Q+ G+   + T++SV+ ACA LA L  G   H      GF ++
Sbjct: 401 YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTAD 460

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+DMYAKCG +  A  VF  + ++ +V WNTMI  +  H   +E ++LF+ MQ 
Sbjct: 461 TMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQS 520

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            GL P++ T+I ++SACSH G+V +GK +F+ M +   ++P + HY+CM+D+L RAGL  
Sbjct: 521 EGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFK 580

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           E +  I  MP +    +WG+LL++CR Y+N+EL E  +K++  + P++ GN +LLSN+Y+
Sbjct: 581 EVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYS 640

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---------GKRNHPRIAEIYSKLEKLV 501
           A  RW++ A+ R   ++   +K    SW+EI          G R+HP++ +I +KL++L+
Sbjct: 641 AVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELL 700

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            EMK+LGY+ E+ +   DVE+  K+ +L++HSEKLA+ FG++ L P   I + KNLR+CG
Sbjct: 701 VEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCG 760

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +KF S +  R+  VRD +RFHHF +G C+C DFW
Sbjct: 761 DCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 9/328 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+  +    G+  H  I  + L ++   S  L++FY+KCG +  A++VFD+M
Sbjct: 121 TFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM 180

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +V+WN++I  ++ +    + VA  +  ++   +P S  T+  VL A A    +   
Sbjct: 181 HKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSS-TIVGVLPAVAQVNSLRHG 239

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
           K++H F ++     +V VGT +LDVY KC  I  A R+F+ M   +NEVTWS+MV  +V 
Sbjct: 240 KEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVV 299

Query: 214 NELYEEALILFRRAQVLGLE-----YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            +   EAL LF   Q+L L+      +  T+++VI  CA L  L  G  +H    K+GF 
Sbjct: 300 CDFMREALELF--CQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFV 357

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            ++   ++L+ MYAKCG +  A   F+ ++ ++ V +  +ISG+ ++  S E + +F +M
Sbjct: 358 LDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEM 417

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKG 356
           Q +G++P + T  SVL AC+H+  +  G
Sbjct: 418 QLSGINPEKATLASVLPACAHLAGLHYG 445



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 206/418 (49%), Gaps = 24/418 (5%)

Query: 40  LQSCARERAPVRGKVCHAKIIG-------MGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L+SC + ++  RGK+ H  ++          L N  +    L++ Y  C  +  AR VFD
Sbjct: 16  LESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFD 75

Query: 93  EMPQRC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           +MP R   +V WN +I +Y  NG  +EA+ L+  ML  G TP + FT   VL AC+A ++
Sbjct: 76  KMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITP-NRFTFPFVLKACSALKE 134

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
             E +++H    +  ++ NV+V TAL+D YAKCG + DA  VF+ M +R+ V W+SM++G
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194

Query: 211 FVQNE-LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           F  +E  Y+E   L  + Q   +  N  TI  V+ A A + +L  GK++H    + GF  
Sbjct: 195 FSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVG 253

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFS--GIEEKNVVLWNTMISG-----FSRHARSVEVM 322
           ++   + ++D+Y KC C+  A  +F   GI  KN V W+ M+       F R A  +   
Sbjct: 254 DVVVGTGILDVYGKCQCIDYARRIFDMMGI-VKNEVTWSAMVGAYVVCDFMREALELFCQ 312

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           +L  K     L  +  T  +V+  C+++  +  G       +K   VL ++   + ++ +
Sbjct: 313 LLMLKDDVIVL--SAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVL-DLMVGNTLLSM 369

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE-LAEIAAKQLFGMEPDNA 439
             + G+I+ A      M      S    +    +N  + E L      QL G+ P+ A
Sbjct: 370 YAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKA 427



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 11/184 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E +TL + L +CA       G   H   I  G   DT+  N LI+ Y+KCG I  ARKVF
Sbjct: 425 EKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVF 484

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D M +R IVSWNT+I +Y  +G   EA+ LF NM  EG  P  + T   ++ AC+    V
Sbjct: 485 DRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKP-DDVTFICLISACSHSGLV 543

Query: 152 FECK-----QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K         F +   M+        ++D+ ++ GL  +     E MP   +V  W 
Sbjct: 544 AEGKYWFNAMTQDFGIIPRMEHY----ACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWG 599

Query: 206 SMVA 209
           ++++
Sbjct: 600 ALLS 603


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/590 (38%), Positives = 344/590 (58%), Gaps = 42/590 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H  +I + L +D    N LI+FY+KCG +    +VF  +P+R +VSWN++I ++  
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQ 214

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G  +EA+ LF  M  +   P +  T+  VL ACA K D    + +H +  +  +  ++ 
Sbjct: 215 GGCPEEALELFQEMETQNVKP-NGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLT 273

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE------------- 218
           +  A+LD+Y KCG + DA R+F+ MPE++ V+W++M+ G+ +   Y+             
Sbjct: 274 LSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQD 333

Query: 219 ------------------EALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQGKQVH 259
                             EAL LF   Q+    + ++ T+ S + ACA L A+  G  +H
Sbjct: 334 IAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIH 393

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             + K G   N    +SL+DMY KCG +  A  VF  +E K+V +W+ MI+G + H    
Sbjct: 394 VYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGK 453

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           + + LF KMQ+  + PN  T+ ++L ACSH+G+VE+G+++F+ M   + VLP V HY+CM
Sbjct: 454 DAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACM 513

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +DILGRAGL+ EA +LI  MP    AS+WG+LL +C  + N+ LAE A  QL  +EP N 
Sbjct: 514 VDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNH 573

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           G ++LLSNIYA   +W+ V+  RKL+RD  +KKE   S +E+         G  +HP   
Sbjct: 574 GAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAK 633

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR-KQELLIHHSEKLALTFGLMCLCPGVP 550
           +IY+KL+++V  ++ +GY P   H L  VE+   K++ L  HSEKLA+ FGL+      P
Sbjct: 634 KIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQP 693

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           IRI+KNLR+CGDCHS  K  S++  RE ++RD  RFHHF  G CSC D+W
Sbjct: 694 IRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 192/374 (51%), Gaps = 35/374 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA+++  GL  D  +++ LI     S    +  A++VFD++P   + +WNT+I +Y 
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           ++    +++ +F+ ML +      +FT   ++ A +   ++F  K  H   +K  +  +V
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F+  +L+  YAKCG +    RVF ++P R+ V+W+SM+  FVQ    EEAL LF+  +  
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            ++ N  T+  V+ ACA  +    G+ VH+ + +   G ++  +++++DMY KCG V DA
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDA 291

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRH-------------------------------ARSV 319
             +F  + EK++V W TM+ G+++                                 +  
Sbjct: 292 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPK 351

Query: 320 EVMILFEKMQQAGL-HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
           E + LF ++Q +    P+E T +S LSAC+ +G ++ G  +  + +K+  +  N    + 
Sbjct: 352 EALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTS 410

Query: 379 MIDILGRAGLIHEA 392
           +ID+  + G + +A
Sbjct: 411 LIDMYCKCGDLQKA 424



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 149/345 (43%), Gaps = 64/345 (18%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +CA++     G+  H+ I    +      SN +++ Y+KCG +  A+++FD+M
Sbjct: 239 TMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKM 298

Query: 95  PQRCIVS-------------------------------WNTIIGSYTTNGREQEAVALFI 123
           P++ IVS                               WN +I +Y   G+ +EA+ LF 
Sbjct: 299 PEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFH 358

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            +         E T+ S L ACA    +     +HV+  K  M  N  + T+L+D+Y KC
Sbjct: 359 ELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKC 418

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  VF S+  ++   WS+M+AG   +   ++A+ LF + Q   ++ N  T ++++
Sbjct: 419 GDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 478

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
           CAC+ +  + +G+               F    LV            Y V  G++     
Sbjct: 479 CACSHVGLVEEGR-------------TFFNQMELV------------YGVLPGVKH---- 509

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            +  M+    R     E + L EKM  A   P    + ++L AC+
Sbjct: 510 -YACMVDILGRAGLLEEAVELIEKMPMA---PAASVWGALLGACT 550



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYA--KCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           Q KQ+HA + +TG   + F+AS L+   A      +  A  VF  I   N+  WNT+I  
Sbjct: 50  QLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109

Query: 312 FSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           ++  +   + +++F +M  Q+   P++ T+  ++ A S +  +  GK++  +++K   VL
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIK---VL 166

Query: 371 --PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
              +VF  + +I    + G +   Y + +N+P     S W S++ +
Sbjct: 167 LGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS-WNSMITA 211


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 349/578 (60%), Gaps = 10/578 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T+L+T+ + +  C+     + G+  H   I      +   +N L++ YSK G ++ A +V
Sbjct: 249 TDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQV 308

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F+ M +R +VSW ++I  Y   G    +V LF  M +EG +P   FT++++L ACA    
Sbjct: 309 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISP-DIFTITTILHACACTGL 367

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K +H +  +  M  ++FV  AL+D+YAKCG + DA  VF  M  ++ V+W++M+ G
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +N L  EAL LF   Q    + N  T++ ++ ACA LAAL +G+++H  + + GF  +
Sbjct: 428 YSKNSLPNEALNLFVEMQY-NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLD 486

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
              A++LVDMY KCG +  A  +F  I EK++V W  MI+G+  H    E +  F +M+ 
Sbjct: 487 RHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN 546

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           +G+ P+E ++IS+L ACSH G++++G  +F++M     + P   HY+C++D+L RAG + 
Sbjct: 547 SGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLS 606

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +AY  I  MP +  A++WG+LL  CR Y +++LAE  A+ +F +EP+N G ++LL+NIYA
Sbjct: 607 KAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYA 666

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVE 502
              +WEEV + R+ I    ++K    SW+EIKGK         +HP   +I   L+K   
Sbjct: 667 EAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRT 726

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            MK+ G+ P+  + L   +D+ K+  L  HSEK+A+ FG++ L PG  +R+ KNLR+CGD
Sbjct: 727 RMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGD 786

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH   KF S++  R+ I+RD NRFHHF +GSCSC   W
Sbjct: 787 CHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 195/433 (45%), Gaps = 58/433 (13%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           EL T  + LQ CA  ++   G+  H+ I    +  D +  + L+  Y  CG +   R++F
Sbjct: 100 ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIF 159

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D++    +  W                     N+L  G      F  S  L         
Sbjct: 160 DKVANEKVFLW---------------------NLLMNGYAKIGNFRESLSLF-------- 190

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++    ++                      +  A ++F+ + +R+ ++W+SM++G+
Sbjct: 191 ---KRMRELGIRR---------------------VESARKLFDELGDRDVISWNSMISGY 226

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V N L E+ L LF +  +LG+  +  T+ SV+  C+    L+ G+ +H    K  FG  +
Sbjct: 227 VSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKEL 286

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              + L+DMY+K G +  A  VF  + E++VV W +MI+G++R   S   + LF +M++ 
Sbjct: 287 TLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKE 346

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P+  T  ++L AC+  G++E GK   +  +K++ +  ++F  + ++D+  + G + +
Sbjct: 347 GISPDIFTITTILHACACTGLLENGKDVHNY-IKENKMQSDLFVSNALMDMYAKCGSMGD 405

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A+ +   M      S W +++     Y    L   A      M+ ++  N + ++ I  A
Sbjct: 406 AHSVFSEMQVKDIVS-WNTMIGG---YSKNSLPNEALNLFVEMQYNSKPNSITMACILPA 461

Query: 452 NRRWEEVARARKL 464
                 + R +++
Sbjct: 462 CASLAALERGQEI 474


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/629 (38%), Positives = 360/629 (57%), Gaps = 60/629 (9%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +++ ++   L +C   +A  + K  H   I  G   D    N LI+ Y+KCGL+  A KV
Sbjct: 118 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKV 177

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE---------------------- 128
           F+ M  + +VSWN ++  Y+ +G  + A  LF NM +E                      
Sbjct: 178 FNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCS 237

Query: 129 -------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM--------- 166
                        G  P +  T+ SVL ACA+     +  ++H ++LK  +         
Sbjct: 238 HEALNVFRQMIFSGSLP-NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGG 296

Query: 167 -DRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALIL 223
            D ++ V  AL+D+Y+KC     A  +F+ +P  ERN VTW+ M+ G  Q     +AL L
Sbjct: 297 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 356

Query: 224 FRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSN-MFAASSLVD 279
           F    ++  G+  N +TIS ++ ACA LAA+  GKQ+HA VL    + S+  F A+ L++
Sbjct: 357 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLIN 416

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KCG V  A  VF  + +K+ + W +M++G+  H R  E + +F+KM++AG  P++ T
Sbjct: 417 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 476

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++ VL ACSH GMV++G SYFD M   + + P   HY+  ID+L R G + +A+  + +M
Sbjct: 477 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDM 536

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA +W +LL++CR + N+ELAE A  +L  M  +N G++ L+SNIYA   RW++VA
Sbjct: 537 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 596

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R R L++ S +KK    SWV+ +        G R+HP   +IY+ LE L++ +K +GY P
Sbjct: 597 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 656

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           ET   LHDV++  K  LL+ HSEKLAL +GL+   PG PIRI KNLR+CGDCHS   + S
Sbjct: 657 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYIS 716

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I   E +VRD +RFHHF NGSCSC  +W
Sbjct: 717 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 213/436 (48%), Gaps = 59/436 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C    +   G   H  I   G  ++    N L+  YS+CG +  A  +FDE+
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSE----FTVSSVLCACA 146
            QR I   +SWN+I+ ++  +     A+ LF  M L   + P +E     ++ ++L AC 
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + V + K++H  A++     +VFVG AL+D YAKCGL+ +A +VF  M  ++ V+W++
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 191

Query: 207 MVAGFVQN-------ELYE----------------------------EALILFRRAQVLG 231
           MVAG+ Q+       EL++                            EAL +FR+    G
Sbjct: 192 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 251

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT----------GFGSNMFAASSLVDMY 281
              N  TI SV+ ACA L A  QG ++HA   K           G   ++   ++L+DMY
Sbjct: 252 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 311

Query: 282 AKCGCVVDAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNE 337
           +KC     A  +F  I  EE+NVV W  MI G +++  S + + LF +M  +  G+ PN 
Sbjct: 312 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 371

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLI 396
            T   +L AC+H+  +  GK     +++ H    +  F  +C+I++  + G +  A  + 
Sbjct: 372 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 431

Query: 397 LNMPFDATASMWGSLL 412
            +M    +A  W S++
Sbjct: 432 DSMS-QKSAISWTSMM 446



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 134/257 (52%), Gaps = 11/257 (4%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           MLR G T    FT+  VL AC            H        + NVF+  AL+ +Y++CG
Sbjct: 1   MLRAG-TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 59

Query: 185 LISDASRVFESMPER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE------YN 235
            + +AS +F+ + +R   + ++W+S+V+  V++     AL LF +  ++  E       +
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             +I +++ AC  L A+ Q K+VH    + G   ++F  ++L+D YAKCG + +A  VF+
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +E K+VV WN M++G+S+         LF+ M++  +  +  T+ +V++  S  G   +
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 356 GKSYFDLMVKQHNVLPN 372
             + F  M+   + LPN
Sbjct: 240 ALNVFRQMIFSGS-LPN 255


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 347/588 (59%), Gaps = 40/588 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE------------------ 93
           GK  H +I+ +G   +    + L++ Y+K  L+  A++ FDE                  
Sbjct: 159 GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLR 218

Query: 94  -------------MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                        M  R  ++W T++  +T NG E EA+ +F  M  +G     ++T  S
Sbjct: 219 CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQG-IAIDQYTFGS 277

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC A   + + KQ+H + ++   D NVFVG+AL+D+Y+KC  I  A  VF  M  +N
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKN 337

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W++++ G+ QN   EEA+ +F   Q  G++ + +T+ SVI +CA LA+L +G Q H 
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC 397

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +   +G    +  +++LV +Y KCG + DA+ +F  +   + V W  ++SG+++  R+ E
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKE 457

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM   G+ P+  T+I VLSACS  G VEKG+SYF  M K H ++P   HY+CMI
Sbjct: 458 TIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMI 517

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+  R+G + EA + I  MP    A  WG+LL++CR   ++E+ + AA+ L  ++P N  
Sbjct: 518 DLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPA 577

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
           +++LL +++AA  +W EVA+ R+ +RD +VKKE   SW++ K K        ++HP    
Sbjct: 578 SYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKG 637

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY KLE L  +M + GYKP+    LHDV D+ K  ++ HHSEKLA+ FGL+ +   +PIR
Sbjct: 638 IYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIR 697

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I+KNLR+C DCH+  KF S+I GR+ +VRD  RFH F++G CSC DFW
Sbjct: 698 IVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 217/408 (53%), Gaps = 44/408 (10%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR- 127
            T N L++  +   L+S    +F  M QR IVS+N +I  ++  G   +AV +++ +L+ 
Sbjct: 73  FTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQA 132

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----- 182
           +     S  T+S+++ A +A  D    KQ H   L+     N FVG+ L+D+YAK     
Sbjct: 133 DSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVG 192

Query: 183 --------------------------CGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
                                     C ++ +A R+FE M +R+ +TW++MV GF QN L
Sbjct: 193 DAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGL 252

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
             EAL +FRR +  G+  +Q+T  S++ AC  L+AL QGKQ+HA + +T +  N+F  S+
Sbjct: 253 ESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSA 312

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           LVDMY+KC  +  A  VF  +  KN++ W  +I G+ ++  S E + +F +MQ+ G+ P+
Sbjct: 313 LVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY----SCMIDILGRAGLIHEA 392
           + T  SV+S+C+++  +E+G  +  L      ++  + HY    + ++ + G+ G I +A
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLA-----LVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 393 YDLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAKQLF-GMEPDN 438
           + L   M F    S W +L++    + R  E  ++  K L  G++PD 
Sbjct: 428 HRLFDEMSFHDQVS-WTALVSGYAQFGRAKETIDLFEKMLAKGVKPDG 474



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 34/328 (10%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T  + L +C    A  +GK  HA II    +++    + L++ YSKC  I  A  
Sbjct: 269 AIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAET 328

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF  M  + I+SW  +I  Y  NG  +EAV +F  M R+G  P  ++T+ SV+ +CA   
Sbjct: 329 VFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDP-DDYTLGSVISSCANLA 387

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            + E  Q H  AL + +   + V  AL+ +Y KCG I DA R+F+ M   ++V+W+++V+
Sbjct: 388 SLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVS 447

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+ Q    +E + LF +    G++ +  T   V+ AC+    + +G+          +  
Sbjct: 448 GYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS---------YFH 498

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +M     +V +     C++D Y                        +RS ++    E ++
Sbjct: 499 SMQKDHGIVPIDDHYTCMIDLY------------------------SRSGKLKEAEEFIK 534

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGK 357
           Q  +HP+   + ++LSAC   G +E GK
Sbjct: 535 QMPMHPDAIGWGTLLSACRLRGDMEIGK 562



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 145/304 (47%), Gaps = 35/304 (11%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-- 226
           N+F   ALL   A   L+SD   +F SM +R+ V++++++AGF     + +A+ ++    
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
                +  ++ T+S+++ A + L     GKQ H  + + GFG+N F  S LVDMYAK   
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 287 VVDAYFVFSGIEEKNVVL-------------------------------WNTMISGFSRH 315
           V DA   F  ++ KNVV+                               W TM++GF+++
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQN 250

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               E + +F +M+  G+  ++ T+ S+L+AC  +  +E+GK     +++      NVF 
Sbjct: 251 GLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT-RYDDNVFV 309

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-QLFGM 434
            S ++D+  +   I  A  +   M      S    ++   +N  + E   + ++ Q  G+
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 435 EPDN 438
           +PD+
Sbjct: 370 DPDD 373


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/594 (39%), Positives = 355/594 (59%), Gaps = 24/594 (4%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           S  +N T+  T +  + S AR  +       H  ++  G + D   +  LIN +S+   +
Sbjct: 62  SHESNPTQ-QTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTV 120

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             ARKVFD+  +R I  WN +  +    GR  + + L+  M   G +    FT + +L A
Sbjct: 121 DNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSS-DRFTYTYLLKA 179

Query: 145 CAAKRDVFEC--------KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           C A     EC        K++H   L+     +V V T L+D+YA+ G +S AS VF+ M
Sbjct: 180 CVAS----ECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEM 235

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY--NQFTISSVICACAGLAALIQ 254
           P +N V+WS+M+A + +N    EAL LFR   +   +   N  T+ SV+ ACA  AAL Q
Sbjct: 236 PVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQ 295

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           GK +HA + + G  S +   S+L+ MYA+CG +     +F  + +K+VVLWN++IS +  
Sbjct: 296 GKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGL 355

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           H    + + +FE+M   G  P+  ++ISVL ACSH G+VE+GK  F+ MVK+H + P+V 
Sbjct: 356 HGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVE 415

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           HY+CM+D+LGRA  + EA  +I ++  +    +WGSLL +CR + ++ELAE A+K+LF +
Sbjct: 416 HYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKL 475

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RN 486
           EP NAGN++LL++IYA    W+EV R +KL+   E++K   +SW+E++ K          
Sbjct: 476 EPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEF 535

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           +P+  ++++ L  L  EMK+ GY P+T+  L+D++   K+ +++ HSEKLA+ FGL+   
Sbjct: 536 NPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTS 595

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            G  IRI KNLR+C DCHS  KF S+ A RE +VRDLNRFHHF +G CSC D+W
Sbjct: 596 KGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/575 (40%), Positives = 342/575 (59%), Gaps = 11/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + +Q+C        GK  H  ++G+GL ND L     ++ YSK G I  AR VF +M
Sbjct: 233 TMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKM 292

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN +I     NG   E+  LF  ++R     +   T+ S+L  C+    +   
Sbjct: 293 PTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRS-SGGFDLTTIVSLLQGCSQTASLATG 351

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K LH  A+++  + N+ + TA++D+Y+KCG +  A+ VF  M +RN +TW++M+ G  QN
Sbjct: 352 KILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQN 410

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+AL LF + Q  G+  N  T  S++ +CA L +L +G+ +H  L + GF  ++   
Sbjct: 411 GHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNM 470

Query: 275 SSLVDMYAKCGCVVDAYFVFS-GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           ++LVDMYAKCG +  A  +FS G   K+VVLWN+MI+G+  H    + + ++ KM + GL
Sbjct: 471 TALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGL 530

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN+ T++S+LSACSH  +VE+G S F+ M + HN+ P   HY+C++D+L RAG   EA 
Sbjct: 531 KPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQ 590

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI  MPF    ++  +LL+ CR ++N+ L    + +L  ++  N G +++LSNIYA  R
Sbjct: 591 ALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEAR 650

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMK 505
           RW++V   R L+R+  +KK    S VE          G  +HP   EIY  LE L   ++
Sbjct: 651 RWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVE 710

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             GY P+T   L DV++  K  +L  HSE+LA+ FGL+    G  IRI KNLR+CGDCH+
Sbjct: 711 TSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHT 770

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K+ S+I  RE IVRD NRFHHF+NG CSC D+W
Sbjct: 771 VTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 205/374 (54%), Gaps = 3/374 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++CA       G    +  +  G+  +    + +I+F  K G I  A++VFD MP + +
Sbjct: 137 LKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDV 196

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V WN+IIG Y   G    A  LF  M   G  P S  T++S++ AC    ++   K +H 
Sbjct: 197 VCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKP-SPITMTSLIQACGGIGNLKLGKCMHG 255

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           + L   +  ++ V T+ +D+Y+K G I  A  VF  MP RN V+W++M++G V+N L  E
Sbjct: 256 YVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGE 315

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           +  LF R       ++  TI S++  C+  A+L  GK +H    ++ F SN+  ++++VD
Sbjct: 316 SFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVD 374

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           +Y+KCG +  A FVF+ ++++NV+ W  M+ G +++  + + + LF +MQ+ G+  N  T
Sbjct: 375 LYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVT 434

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++S++ +C+H+G +++G+S    + +      ++ + + ++D+  + G I+ A  +  + 
Sbjct: 435 FVSLVHSCAHLGSLKRGRSIHGHLFRLGFAF-DIVNMTALVDMYAKCGKINLAERIFSHG 493

Query: 400 PFDATASMWGSLLA 413
                  +W S++ 
Sbjct: 494 SISKDVVLWNSMIT 507



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 190/383 (49%), Gaps = 6/383 (1%)

Query: 32  ELSTLQATLQSCARERAP--VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           +L T+     S  RE +   +  K  HA+II   L+ D   +  L+  YS    +  AR 
Sbjct: 26  QLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARY 85

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD+  Q   +  N ++  Y  +GR +E + LF  ++R         + +  L ACA+  
Sbjct: 86  VFDQFFQPKGLLCNAMLCGYLQSGRYRETLELF-GLMRSRNLEVDSCSCTFALKACASSL 144

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D     ++   A++  M++N FVG++++    K G I +A RVF+ MP ++ V W+S++ 
Sbjct: 145 DYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIG 204

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+VQ   ++ A  LF      G++ +  T++S+I AC G+  L  GK +H  +   G G+
Sbjct: 205 GYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGN 264

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   +S VDMY+K G +  A +VF  +  +N+V WN MISG  R+    E   LF ++ 
Sbjct: 265 DILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLV 324

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           ++    +  T +S+L  CS    +  GK      ++      N+   + ++D+  + G +
Sbjct: 325 RSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFE--SNLILSTAIVDLYSKCGSL 382

Query: 390 HEAYDLILNMPFDATASMWGSLL 412
            +A   + N   D     W ++L
Sbjct: 383 KQA-TFVFNRMKDRNVITWTAML 404



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 139/315 (44%), Gaps = 37/315 (11%)

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + +++   K  H   +  ++  + FV T L+  Y+    +  A  VF+   +   +  ++
Sbjct: 41  SSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNA 100

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+ G++Q+  Y E L LF   +   LE +  + +  + ACA       G ++ +   + G
Sbjct: 101 MLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKG 160

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
              N F  SS++    K G + +A  VF G+  K+VV WN++I G+ +         LF 
Sbjct: 161 MEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFF 220

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGK-------------------SYFDLMVKQH 367
           +M  +G+ P+  T  S++ AC  IG ++ GK                   S+ D+  K  
Sbjct: 221 EMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMG 280

Query: 368 NV---------LP--NVFHYSCMIDILGRAGLIHEAYDLILNM-----PFDATASMWGSL 411
           ++         +P  N+  ++ MI    R GL+ E++DL   +      FD T  +  SL
Sbjct: 281 DIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIV--SL 338

Query: 412 LASCRNYRNLELAEI 426
           L  C    +L   +I
Sbjct: 339 LQGCSQTASLATGKI 353


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/595 (37%), Positives = 351/595 (58%), Gaps = 31/595 (5%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           + + L++C++      GK  H   +  GL +D    N L+  YS+CG +  AR +FD+M 
Sbjct: 112 IPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMS 171

Query: 96  QRCIVSWNTIIGSYTT--NGREQEAVA--------------------LFINMLREGKTPY 133
           +R +VSW+T+I +Y T   G  Q ++                     LF+ M+ E   P 
Sbjct: 172 ERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFP- 230

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           ++ T+ S++ +C     V   K+LH + L+     ++ + TAL+D+Y KCG I  A  +F
Sbjct: 231 NDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIF 290

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           +SM  ++ +TW++M++ + Q    + A  LF + +  G+  N+ T+ S++  CA   AL 
Sbjct: 291 DSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALD 350

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            GK  HA + K G   ++   ++L+DMYAKCG +  A  +FS   ++++  WN M++G+ 
Sbjct: 351 MGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYG 410

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H    + + LF +M+  G+ PN+ T+I  L ACSH G+V +GK  F+ M+    ++P V
Sbjct: 411 MHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKV 470

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY CM+D+LGRAGL+ EAY +I +MP     ++WG++LA+C+ ++N  + E+AA++L  
Sbjct: 471 EHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLA 530

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKR 485
           +EP N G  +L+SNIYAA  RW +VA  RK ++D+ +KKE   S +E+         G  
Sbjct: 531 LEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDT 590

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
            HP I +I   L ++ +++K+ GY P+T   LH++++  K+  L +HSEKLA+ FGL+  
Sbjct: 591 AHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLIST 650

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG PIR++KNLRIC DCH+  K  S+I  R  IVRD NRFHHF  GSCSC  +W
Sbjct: 651 APGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 3/286 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + + SC    A   GK  HA I+  G       +  L++ Y KCG I  AR +FD M
Sbjct: 234 TMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSM 293

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +++W  +I +Y        A  LF+ M   G  P +E T+ S+L  CA    +   
Sbjct: 294 KNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRP-NELTMVSLLSLCAVNGALDMG 352

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K  H +  K  ++ +V + TAL+D+YAKCG IS A R+F    +R+  TW+ M+AG+  +
Sbjct: 353 KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMH 412

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFA 273
              E+AL LF   + LG++ N  T    + AC+    +++GK +   ++   G    +  
Sbjct: 413 GYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEH 472

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARS 318
              +VD+  + G + +AY +   +    N+ +W  M++    H  S
Sbjct: 473 YGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNS 518



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 48/252 (19%)

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL  +   + L +E + F I SV+ AC+ ++    GK++H    K G  S++F  ++L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS-------GFS-RHARSVEVMI-------- 323
           MY++CG +V A  +F  + E++VV W+TMI        GFS R   S   MI        
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 324 ------LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
                 LF +M +  + PN+ T +S++ +C  +G V+ GK           +L N F  S
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRL------HAYILRNGFGMS 266

Query: 378 -----CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-----ASCRNYRNLELAEIA 427
                 ++D+ G+ G I  A  +  +M  +     W +++     A+C +Y         
Sbjct: 267 LALATALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISAYAQANCIDY--------- 316

Query: 428 AKQLFGMEPDNA 439
           A QLF    DN 
Sbjct: 317 AFQLFVQMRDNG 328


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 337/559 (60%), Gaps = 15/559 (2%)

Query: 53   KVCHAKIIGMGLNNDTLTSNILINF---YSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
            K  HAKI   GL  D   S IL  F   Y     I  A  VF+++P  C   WN +I  +
Sbjct: 737  KKTHAKIFAYGLQYD---SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGF 793

Query: 110  TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             T+GR   ++ L+  M+ +G  P  +F     L +CA   D+   K +H   +      +
Sbjct: 794  ATDGRFLSSLELYSKMMEKGLKP-DKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSND 852

Query: 170  VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            +FV  AL+D+YAKCG I  A  VF+ M  R+ V+W+SM++G+  N    E L  F   + 
Sbjct: 853  LFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRS 912

Query: 230  LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             G+  N+ +I SV+ AC  L AL +G+  H+ + +TGF  ++  A++++DMY+KCG +  
Sbjct: 913  SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDL 972

Query: 290  AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
            A  +F     K++V W+ MI+ +  H    + + LF++M +AG+ P+  T+  VLSACSH
Sbjct: 973  ARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 1032

Query: 350  IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
             G++E+GK YF LM ++  +   + +Y+CM+D+LGRAG + EA DLI NMP +  AS+WG
Sbjct: 1033 SGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWG 1092

Query: 410  SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
            SLL +CR + NL+LAE  A  LF ++P +AG H+LLSNIYAA  RW EV + RK++    
Sbjct: 1093 SLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRG 1152

Query: 470  VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
              K +  S VE          G R+HP+  ++Y+KLE+L   MK LGY P T+  LHD+E
Sbjct: 1153 ANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIE 1212

Query: 522  DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
            +  K+  L +HSE+LA+ FGL+   PG  +RI KNLRICGDCH+ +K  S+I  R  +VR
Sbjct: 1213 EEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVR 1272

Query: 582  DLNRFHHFTNGSCSCWDFW 600
            D++RFH F +G CSC D+W
Sbjct: 1273 DMHRFHRFEDGVCSCGDYW 1291



 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 173/494 (35%), Positives = 291/494 (58%), Gaps = 10/494 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + + +CA+      G   H  +I    + D    N L+N Y+K G    A  +F +M
Sbjct: 208 TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 267

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ ++SW+T+I  Y  N    EA+ LF  M+ +   P S  TV S L ACA  R++ E 
Sbjct: 268 PEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNS-VTVVSALQACAVSRNLEEG 326

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H  A+    + +  V TAL+D+Y KC    +A  +F+ +P+++ V+W ++++G+ QN
Sbjct: 327 KKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQN 386

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +  +++ +FR     G++ +   +  ++ A + L    Q   +H  + ++GF SN+F  
Sbjct: 387 GMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVG 446

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGL 333
           +SL+++Y+KCG + DA  +F G+  ++VV+W++MI+ +  H R  E + +F++M + + +
Sbjct: 447 ASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTV 506

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T++S+LSACSH G+VE+G   FD MV  + + P+  H+  M+D+LGR G + +A 
Sbjct: 507 RPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAM 566

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           D+I  MP  A   +WG+LL +CR + N+E+ E AAK LF ++P +AG ++LLSNIYA + 
Sbjct: 567 DIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDG 626

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMK 505
           +W+ VA  R  I++  +KK   +S VE++G         R HP   +IY  L KL  +M 
Sbjct: 627 KWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMG 686

Query: 506 KLGYKPETEHDLHD 519
           K  Y P+ +  LHD
Sbjct: 687 KEVYIPDLDFLLHD 700



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 201/376 (53%), Gaps = 7/376 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            Q+C   R+  +    H+++   G+ +DT  +  L + Y+KC  +  ARKVFDE P   +
Sbjct: 11  FQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNV 67

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             WN+ + SY    + +E + LF  M+         FT+   L ACA  R +   K +H 
Sbjct: 68  HLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG 127

Query: 160 FALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
           FA K   +  ++FVG+AL+++Y+KCG + +A +VFE     + V W+SMV G+ QN   E
Sbjct: 128 FAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPE 187

Query: 219 EALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           EAL LF +  ++  +  +  T+ SV+ ACA L  +  G  VH ++ +  F  ++   +SL
Sbjct: 188 EALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSL 247

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +++YAK GC   A  +FS + EK+V+ W+TMI+ ++ +  + E + LF +M +    PN 
Sbjct: 248 LNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNS 307

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T +S L AC+    +E+GK    + V +   L +    + +ID+  +     EA DL  
Sbjct: 308 VTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL-DFSVSTALIDMYMKCSCPDEAVDLFQ 366

Query: 398 NMPFDATASMWGSLLA 413
            +P     S W +LL+
Sbjct: 367 RLPKKDVVS-WVALLS 381



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 198/385 (51%), Gaps = 11/385 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI-----LINFYSKCGLISGARK 89
           T+   L++CA  R    GKV H    G    ND + S++     L+  YSKCG +  A K
Sbjct: 105 TIPIALKACAGLRMLELGKVIH----GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALK 160

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF+E  +   V W +++  Y  N   +EA+ALF  M+          T+ SV+ ACA   
Sbjct: 161 VFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLL 220

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           +V     +H   ++   D ++ +  +LL++YAK G    A+ +F  MPE++ ++WS+M+A
Sbjct: 221 NVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIA 280

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +  NE   EAL LF        E N  T+ S + ACA    L +GK++H +    GF  
Sbjct: 281 CYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL 340

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +   +++L+DMY KC C  +A  +F  + +K+VV W  ++SG++++  + + M +F  M 
Sbjct: 341 DFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNML 400

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ P+    + +L+A S +G+ ++       +V+      NVF  + +I++  + G +
Sbjct: 401 SDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSL 459

Query: 390 HEAYDLILNMPFDATASMWGSLLAS 414
            +A  L   M       +W S++A+
Sbjct: 460 GDAVKLFKGMIVRDVV-IWSSMIAA 483



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 139/279 (49%), Gaps = 3/279 (1%)

Query: 39   TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
             L+SCA      RGKV H  ++  G +ND      L++ Y+KCG I  AR VFD+M  R 
Sbjct: 824  ALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRD 883

Query: 99   IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
            +VSW ++I  Y  NG   E +  F  M   G  P +  ++ SVL AC     + + +  H
Sbjct: 884  LVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIP-NRVSILSVLLACGNLGALRKGEWFH 942

Query: 159  VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             + ++   + ++ V TA++D+Y+KCG +  A  +F+    ++ V WS+M+A +  +    
Sbjct: 943  SYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGR 1002

Query: 219  EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSL 277
            +A+ LF +    G+  +  T + V+ AC+    L +GK    ++ +       +   + +
Sbjct: 1003 KAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACM 1062

Query: 278  VDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            VD+  + G + +A  +   +  E +  +W +++     H
Sbjct: 1063 VDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIH 1101



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 16/281 (5%)

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           AC   R V    QLH    K  +  + F  T L  +YAKC  +  A +VF+  P  N   
Sbjct: 13  ACNNGRSV---SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHL 69

Query: 204 WSSMVAGFVQNELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W+S +  + + + +EE L LF       G   + FTI   + ACAGL  L  GK +H   
Sbjct: 70  WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129

Query: 263 CKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
            K    GS+MF  S+LV++Y+KCG + +A  VF   +  + VLW +M++G+ ++    E 
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189

Query: 322 MILFEKMQQAG---LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH--NVLPNVFHY 376
           + LF +M       L P   T +SV+SAC+ +  V+ G     L++++     LP V   
Sbjct: 190 LALFSQMVMMDCVVLDP--VTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLV--- 244

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
           + ++++  + G    A +L   MP     S W +++A   N
Sbjct: 245 NSLLNLYAKTGCEKIAANLFSKMPEKDVIS-WSTMIACYAN 284



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 92/177 (51%), Gaps = 3/177 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            ++ + L +C    A  +G+  H+ +I  G   D L +  +++ YSKCG +  AR +FDE 
Sbjct: 921  SILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDET 980

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              + +V W+ +I SY  +G  ++A+ LF  M++ G  P S  T + VL AC+    + E 
Sbjct: 981  AGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRP-SHVTFTCVLSACSHSGLLEEG 1039

Query: 155  KQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            K    +   +  + R +     ++D+  + G +S+A  + E+MP E +   W S++ 
Sbjct: 1040 KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLG 1096


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/588 (38%), Positives = 343/588 (58%), Gaps = 40/588 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV----------- 100
           G   H +++ +G        + L++ Y+K GLI  AR+VF EM  + +V           
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 101 --------------------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                               +W T++   T NG + EA+ +F  M  EG     ++T  S
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG-VGIDQYTFGS 283

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC A     E KQ+H +  +   + NVFVG+AL+D+Y+KC  I  A  VF  M  RN
Sbjct: 284 ILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W++M+ G+ QN   EEA+  F   Q+ G++ + FT+ SVI +CA LA+L +G Q H 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +   +G    +  +++LV +Y KCG + DA+ +F  +   + V W  +++G+++  ++ E
Sbjct: 404 LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKE 463

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM   GL P+  T+I VLSACS  G+VEKG  YFD M K H+++P   HY+CMI
Sbjct: 464 TIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMI 523

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+  R+G   EA + I  MP    A  W +LL+SCR   N+E+ + AA+ L   +P N  
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
           +++LL +++AA  +W EVA  R+ +RD +VKKE   SW++ K K        ++HP  + 
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSR 643

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY KLE L  +M + GYKP+    LHDV D+ K  ++ HHSEKLA+ FGL+ +   +PIR
Sbjct: 644 IYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIR 703

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I+KNLR+C DCH+  KF S+I GR+ +VRD  RFH F++G+CSC DFW
Sbjct: 704 IVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 210/407 (51%), Gaps = 35/407 (8%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + +  T N L++  +   L+    ++F  MP+R  VS+N +I  +++ G    +V L+  
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           +LRE     +  T+S+++   +A  D      +H   L+       FVG+ L+D+YAK G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 185 LISDASRVFESMP-------------------------------ERNEVTWSSMVAGFVQ 213
           LI DA RVF+ M                                +R+ +TW++MV G  Q
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L  EAL +FRR +  G+  +Q+T  S++ AC  LAA  +GKQ+HA + +T +  N+F 
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFV 315

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            S+LVDMY+KC  +  A  VF  +  +N++ W  MI G+ ++A S E +  F +MQ  G+
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T  SV+S+C+++  +E+G + F  +     ++  +   + ++ + G+ G I +A+
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 394 DLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAKQLF-GMEPDN 438
            L   M F    S W +L+     + +  E  ++  K L  G++PD 
Sbjct: 435 RLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLVNGLKPDG 480



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 147/323 (45%), Gaps = 34/323 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C    A   GK  HA I      ++    + L++ YSKC  I  A  VF  M
Sbjct: 280 TFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R I+SW  +I  Y  N   +EAV  F  M  +G  P  +FT+ SV+ +CA    + E 
Sbjct: 340 TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP-DDFTLGSVISSCANLASLEEG 398

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q H  AL + + R + V  AL+ +Y KCG I DA R+F+ M   ++V+W+++V G+ Q 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E + LF +  V GL+ +  T   V+ AC+    + +G       C   +  +M   
Sbjct: 459 GKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKG-------CD--YFDSMQKD 509

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             +V +     C++D Y                     SR  R  E     ++M  +   
Sbjct: 510 HDIVPIDDHYTCMIDLY---------------------SRSGRFKEAEEFIKQMPHS--- 545

Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
           P+   + ++LS+C   G +E GK
Sbjct: 546 PDAFGWATLLSSCRLRGNMEIGK 568



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 142/336 (42%), Gaps = 71/336 (21%)

Query: 170 VFVGTALLDVYAKCGLISDASRVFES-------------------------------MPE 198
            F+   LL  YAK G ++ A RVF+                                MPE
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           R+ V++++++ GF        ++ L+R   +   +   + T+S++I   + L+    G  
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL------------- 304
           VH  + + GFG+  F  S LVDMYAK G + DA  VF  +E K VV+             
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 305 ------------------WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
                             W TM++G +++   +E + +F +M+  G+  ++ T+ S+L+A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP----FD 402
           C  +   E+GK     + +      NVF  S ++D+  +   I  A  +   M       
Sbjct: 288 CGALAASEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
            TA + G    +C        +E+   Q+ G++PD+
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEM---QMDGIKPDD 379


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/561 (40%), Positives = 338/561 (60%), Gaps = 17/561 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA ++      +   +N L++FYSKC  +   R++FDEMP+R  VS+N II +Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 112 NGREQEAVALFINMLREG----KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
           N      + LF  M + G      PY+     ++L    +  DV   KQ+H   +   + 
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYA-----TMLSVAGSLPDVHIGKQIHAQLVLLGLA 369

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
               +G AL+D+Y+KCG++  A   F +  E++ ++W++++ G+VQN  +EEAL LF   
Sbjct: 370 SEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 429

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  GL  ++ T SS+I A + LA +  G+Q+H+ L ++G+ S++F+ S LVDMYAKCGC+
Sbjct: 430 RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            +A   F  + E+N + WN +IS ++ +  +   + +FE M   G +P+  T++SVL+AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           SH G+ ++   YF LM  Q+++ P   HY+C+ID LGR G   +   +++ MPF A   +
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPII 609

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           W S+L SCR + N ELA +AA +LFGMEP +A  +++LSNIYA   +WE+ A  +K++RD
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 468 SEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             V+KE   SWVEIK K           P I EI  +L++L +EM K GYKP+    LH 
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHM 729

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           V+   K E L +HSE+LA+ F LM    G PIRIMKNL  C DCH+ +K  S+I  R+ I
Sbjct: 730 VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDII 789

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           VRD  RFHHF +G CSC D+W
Sbjct: 790 VRDSRRFHHFKDGVCSCGDYW 810



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 197/379 (51%), Gaps = 6/379 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H   I  GL+      N L++ Y K GL++ AR+VF EM  +  V++N ++   +  G  
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +A+ LF  M R G  P + FT SS+L   A    +    Q+H   L++    NVFV  +
Sbjct: 218 TQALQLFAAMRRAG-IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+KC  + D  R+F+ MPER+ V+++ ++A +  N+     L LFR  Q LG +  
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
               ++++     L  +  GKQ+HA L   G  S     ++L+DMY+KCG +  A   FS
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
              EK+ + W  +I+G+ ++ +  E + LF  M++AGL P+  T+ S++ A S + M+  
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+     +++      +VF  S ++D+  + G + EA      MP   + S W +++++ 
Sbjct: 457 GRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAY 514

Query: 416 RNYRNLELAEIAAKQLFGM 434
            +Y     A+ A K   GM
Sbjct: 515 AHYGE---AKNAIKMFEGM 530



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 205/406 (50%), Gaps = 36/406 (8%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N++++ YS  G +  A+ +F   P R   +W  ++ ++   GR  +A++LF  ML EG  
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 132 PYSEFTVSSVL--CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
           P    TV++VL    C           LH FA+K  +D +VFV   LLD Y K GL++ A
Sbjct: 138 P-DRVTVTTVLNLPGCT-------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            RVF  M +++ VT+++M+ G  +  L+ +AL LF   +  G+    FT SS++   AG+
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
           A L+ G QVHA++ ++    N+F  +SL+D Y+KC C+ D   +F  + E++ V +N +I
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 309

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV----K 365
           + ++ +  +  V+ LF +MQ+ G       Y ++LS    +  V  GK     +V     
Sbjct: 310 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 369

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLELA 424
             ++L N      +ID+  + G++  A     N   + +A  W +L+    +N ++ E  
Sbjct: 370 SEDLLGN-----ALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALITGYVQNGQHEE-- 421

Query: 425 EIAAKQLF------GMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
              A QLF      G+ PD A      S+I  A+     +   R+L
Sbjct: 422 ---ALQLFSDMRRAGLRPDRA----TFSSIIKASSSLAMIGLGRQL 460



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 14/237 (5%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +N+F    +L  Y+  G +  A  +F S P RN  TW+ M+          +AL LFR  
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 228 QVLGLEYNQFTISSVI----CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
              G+  ++ T+++V+    C    L         H    K G  +++F  ++L+D Y K
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTVPSL---------HPFAIKFGLDTHVFVCNTLLDAYCK 182

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
            G +  A  VF  + +K+ V +N M+ G S+     + + LF  M++AG+     T+ S+
Sbjct: 183 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           L+  + +  +  G     L+++  +VL NVF  + ++D   +   + +   L   MP
Sbjct: 243 LTVAAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRLFDEMP 298


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 351/576 (60%), Gaps = 12/576 (2%)

Query: 34  STLQATLQSCARERAPVRG-KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           ST  A + +C   R+ +RG K     +I  G   D    N ++  + KCGL+  ARK+FD
Sbjct: 119 STYDALVSACVGLRS-IRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFD 177

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EMP++ + SW T++G     G   EA  LF+ M +E     S  T ++++ A A    V 
Sbjct: 178 EMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSR-TFATMIRASAGLGLVQ 236

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             KQ+H  ALK  +  + FV  AL+D+Y+KCG I DA  VF+ MPE+  V W+S++A + 
Sbjct: 237 VGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYA 296

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            +   EEAL L+   +  G   + FTIS VI  CA LA+L   KQ HA L + GF +++ 
Sbjct: 297 LHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIV 356

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           A ++LVD Y+K G + DA  VF+ +  KNV+ WN +I+G+  H +  E + +FE+M Q G
Sbjct: 357 ANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEG 416

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P   T+++VLSACS+ G+ ++G   F  M + H V P   HY+CMI++LGR  L+ EA
Sbjct: 417 VTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEA 476

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y LI   PF  TA+MW +LL +CR ++NLEL ++AA++L+GMEP+   N+++L N+Y ++
Sbjct: 477 YALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSS 536

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            + +E A   + ++   ++   + SWVE+K        G ++H +  EIY K++ L+ E+
Sbjct: 537 GKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEI 596

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
            K GY  E E  L DV D  +Q +L +HSEKLA+ FGL+      P++I +  R+CGDCH
Sbjct: 597 CKHGYAEENETLLPDV-DEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCH 655

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S +K  + + GRE +VRD +RFHHF NGSCSC D+W
Sbjct: 656 SAIKLIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/629 (38%), Positives = 360/629 (57%), Gaps = 60/629 (9%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +++ ++   L +C   +A  + K  H   I  G   D    N LI+ Y+KCGL+  A KV
Sbjct: 225 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKV 284

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE---------------------- 128
           F+ M  + +VSWN ++  Y+ +G  + A  LF NM +E                      
Sbjct: 285 FNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCS 344

Query: 129 -------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM--------- 166
                        G  P +  T+ SVL ACA+     +  ++H ++LK  +         
Sbjct: 345 HEALNVFRQMIFSGSLP-NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGG 403

Query: 167 -DRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALIL 223
            D ++ V  AL+D+Y+KC     A  +F+ +P  ERN VTW+ M+ G  Q     +AL L
Sbjct: 404 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 463

Query: 224 FRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSN-MFAASSLVD 279
           F    ++  G+  N +TIS ++ ACA LAA+  GKQ+HA VL    + S+  F A+ L++
Sbjct: 464 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLIN 523

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KCG V  A  VF  + +K+ + W +M++G+  H R  E + +F+KM++AG  P++ T
Sbjct: 524 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 583

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++ VL ACSH GMV++G SYFD M   + + P   HY+  ID+L R G + +A+  + +M
Sbjct: 584 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDM 643

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P + TA +W +LL++CR + N+ELAE A  +L  M  +N G++ L+SNIYA   RW++VA
Sbjct: 644 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 703

Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R R L++ S +KK    SWV+ +        G R+HP   +IY+ LE L++ +K +GY P
Sbjct: 704 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 763

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           ET   LHDV++  K  LL+ HSEKLAL +GL+   PG PIRI KNLR+CGDCHS   + S
Sbjct: 764 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYIS 823

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I   E +VRD +RFHHF NGSCSC  +W
Sbjct: 824 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 213/436 (48%), Gaps = 59/436 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C    +   G   H  I   G  ++    N L+  YS+CG +  A  +FDE+
Sbjct: 119 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 178

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSE----FTVSSVLCACA 146
            QR I   +SWN+I+ ++  +     A+ LF  M L   + P +E     ++ ++L AC 
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + V + K++H  A++     +VFVG AL+D YAKCGL+ +A +VF  M  ++ V+W++
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 298

Query: 207 MVAGFVQN-------ELYE----------------------------EALILFRRAQVLG 231
           MVAG+ Q+       EL++                            EAL +FR+    G
Sbjct: 299 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 358

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT----------GFGSNMFAASSLVDMY 281
              N  TI SV+ ACA L A  QG ++HA   K           G   ++   ++L+DMY
Sbjct: 359 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 418

Query: 282 AKCGCVVDAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNE 337
           +KC     A  +F  I  EE+NVV W  MI G +++  S + + LF +M  +  G+ PN 
Sbjct: 419 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 478

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLI 396
            T   +L AC+H+  +  GK     +++ H    +  F  +C+I++  + G +  A  + 
Sbjct: 479 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 538

Query: 397 LNMPFDATASMWGSLL 412
            +M    +A  W S++
Sbjct: 539 DSMS-QKSAISWTSMM 553



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 11/304 (3%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y  CG    A  V + +     V WN +I  +   GR   A+ +   MLR G T    FT
Sbjct: 61  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRLDHFT 119

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +  VL AC            H        + NVF+  AL+ +Y++CG + +AS +F+ + 
Sbjct: 120 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 179

Query: 198 ER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE------YNQFTISSVICACAG 248
           +R   + ++W+S+V+  V++     AL LF +  ++  E       +  +I +++ AC  
Sbjct: 180 QRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGS 239

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L A+ Q K+VH    + G   ++F  ++L+D YAKCG + +A  VF+ +E K+VV WN M
Sbjct: 240 LKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 299

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           ++G+S+         LF+ M++  +  +  T+ +V++  S  G   +  + F  M+   +
Sbjct: 300 VAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGS 359

Query: 369 VLPN 372
            LPN
Sbjct: 360 -LPN 362



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 17/271 (6%)

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +GT ++  Y  CG    A  V E +     V W+ ++   ++    + A+ +  R    G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              + FT+  V+ AC  L +   G   H ++C  GF SN+F  ++LV MY++CG + +A 
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 292 FVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH---PNEQTYI---- 341
            +F  I ++   +V+ WN+++S   + + +   + LF KM    +H    NE++ I    
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI-VHEKPTNERSDIISIV 231

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++L AC  +  V + K      ++    L +VF  + +ID   + GL+  A  +   M F
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFL-DVFVGNALIDAYAKCGLMENAVKVFNMMEF 290

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLF 432
               S W +++A      N +    AA +LF
Sbjct: 291 KDVVS-WNAMVAGYSQSGNFK----AAFELF 316


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/574 (39%), Positives = 338/574 (58%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L+ C+R +A   G+  HA I+  G  +     N LI+ Y+ CG +  AR+VFDEM
Sbjct: 126 TFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEM 185

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R + +WN++   YT +G  +E V LF  ML E    + E T+ SVL AC    D+   
Sbjct: 186 SERNVRTWNSMFAGYTKSGNWEEVVKLFHEML-ELDIRFDEVTLVSVLTACGRLADLELG 244

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + ++ +  +  +  N  + T+L+D+YAKCG +  A R+F+ M  R+ V WS+M++G+ Q 
Sbjct: 245 EWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQA 304

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL LF   Q   ++ N+ T+ S++ +CA L AL  GK VH  + K      +   
Sbjct: 305 SRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG 364

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+D YAKCG V  +  VF  +  KNV+ W  +I G + + +  + +  F  M +  + 
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVE 424

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VLSACSH G+V++G+  F  M +   + P + HY CM+DILGRAGLI EA+ 
Sbjct: 425 PNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQ 484

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I NMP    A +W +LLASC+ ++N+E+ E + KQL  +EP ++G+++LLSNIYA+  R
Sbjct: 485 FIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGR 544

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
           WE+  + R  +++  +KK    S +E+ G           H +  EIY+ +E +++++K 
Sbjct: 545 WEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKS 604

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P T     D E+  K+  + HHSEKLA+ FGL+   PG  IRI KNLR+C DCH+ 
Sbjct: 605 AGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNA 664

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S++  RE +VRD  RFHHF  GSCSC D+W
Sbjct: 665 TKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 177/326 (54%), Gaps = 3/326 (0%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  +F ++ +    ++N +I  +T      EA+ LF  M      P  EFT   +L  C+
Sbjct: 77  AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQP-DEFTFPCILKVCS 135

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
             + + E +Q+H   +K     + FV   L+ +YA CG +  A RVF+ M ERN  TW+S
Sbjct: 136 RLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNS 195

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M AG+ ++  +EE + LF     L + +++ T+ SV+ AC  LA L  G+ ++  + + G
Sbjct: 196 MFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKG 255

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
              N    +SLVDMYAKCG V  A  +F  ++ ++VV W+ MISG+S+ +R  E + LF 
Sbjct: 256 LKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFH 315

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +MQ+A + PNE T +S+LS+C+ +G +E GK +    +K+  +   V   + ++D   + 
Sbjct: 316 EMQKANIDPNEITMVSILSSCAVLGALETGK-WVHFFIKKKRMKLTVTLGTALMDFYAKC 374

Query: 387 GLIHEAYDLILNMPFDATASMWGSLL 412
           G +  + ++   MP     S W  L+
Sbjct: 375 GSVESSIEVFGKMPVKNVLS-WTVLI 399


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 335/515 (65%), Gaps = 10/515 (1%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R + SW ++I  Y  N    EA+ L + MLR    P + FT +S+L A  A      
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKP-NGFTFASLLKAAGASASSGI 59

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+H   +K     +V+VG+ALLD+YA+CG +  A  VF+ +  +N V+W++++AGF +
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 119

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               E  L++F   Q  G E   FT SSV  A AG+ AL QGK VHA + K+G   + F 
Sbjct: 120 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 179

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++++DMYAK G ++DA  VF  +++K++V WN+M++ F+++    E +  FE+M++ G+
Sbjct: 180 GNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 239

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
           H N+ T++S+L+ACSH G+V++GK YFD+M K+HN+ P + HY  ++D+LGRAGL+++A 
Sbjct: 240 HLNQITFLSILTACSHGGLVKEGKQYFDMM-KEHNLEPEIDHYVTVVDLLGRAGLLNDAL 298

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I  MP   TA++WG+LL SCR ++N ++ + AA  +F ++PD+ G  +LL NIYA+  
Sbjct: 299 VFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTG 358

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           +W+  AR RK+++ + VKKE + SWVEI+            HPR  EIY K E++  +++
Sbjct: 359 QWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIR 418

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K GY P T++ L  V++  +Q  L +HSEK+AL F L+ +  G  IRIMKN+RICGDCHS
Sbjct: 419 KAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHS 478

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             ++ S++  RE +VRD NRFHHF++GSCSC D+W
Sbjct: 479 AFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 139/282 (49%), Gaps = 2/282 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++     +   G+  HA  +    ++D    + L++ Y++CG +  A  VFD++
Sbjct: 43  TFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQL 102

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             +  VSWN +I  +   G  +  + +F  M R G    + FT SSV  A A    + + 
Sbjct: 103 ESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEA-THFTYSSVFSAIAGIGALEQG 161

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +K+    + FVG  +LD+YAK G + DA +VF+ + +++ VTW+SM+  F Q 
Sbjct: 162 KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQY 221

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  EA+  F   +  G+  NQ T  S++ AC+    + +GKQ   ++ +      +   
Sbjct: 222 GLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHY 281

Query: 275 SSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
            ++VD+  + G + DA  F+F    +    +W  ++     H
Sbjct: 282 VTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 323


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 347/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L+SC    A   GK  H   +    ++D      L+  Y+K G I  A+++F+EM
Sbjct: 239 TISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEM 298

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  ++ W+ +I  Y  + R +EA+ LF+ M +    P + FT +SVL ACA+   +   
Sbjct: 299 PKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVP-NNFTFASVLQACASSVSLDLG 357

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   LK  ++ NVFV  A++DVYAKCG I ++ ++FE +P+RN+VTW++++ G+VQ 
Sbjct: 358 KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQL 417

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E A+ LF       ++  + T SSV+ A A LAAL  G Q+H++  KT +  +   A
Sbjct: 418 GDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVA 477

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+DMYAKCG + DA   F  + +++ V WN MI G+S H  S+E + LF+ MQ     
Sbjct: 478 NSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCK 537

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++ VLSACS+ G++ KG+++F+ M K +++ P + HY+CM+ +LGR G   EA  
Sbjct: 538 PNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMK 597

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI  + +  +  +W +LL +C  ++ ++L  + A+ +  MEP +   H+LLSN+YA   R
Sbjct: 598 LIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGR 657

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W+ VA  RK ++  +V+KE   SWVE +        G  +HP I  I + LE L ++ + 
Sbjct: 658 WDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRD 717

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L DV+D  K+  L  HSE+LAL +GL+       IRI+KNLRIC DCH+ 
Sbjct: 718 AGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTV 777

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MK  S++  RE ++RD+NRFHHF +G CSC D+W
Sbjct: 778 MKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 187/337 (55%), Gaps = 2/337 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA +  +G + D      LI+ YS  G +  AR VFD++  + +VSW  ++  Y  N   
Sbjct: 159 HACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFY 218

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +E++ LF  M   G  P + FT+S  L +C         K +H  ALK   D ++FVG A
Sbjct: 219 EESLQLFNQMRIMGYKP-NNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LL++YAK G I DA R+FE MP+ + + WS M+A + Q++  +EAL LF R +   +  N
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            FT +SV+ ACA   +L  GKQ+H+ + K G  SN+F +++++D+YAKCG + ++  +F 
Sbjct: 338 NFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFE 397

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            + ++N V WNT+I G+ +       M LF  M +  + P E TY SVL A + +  +E 
Sbjct: 398 ELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEP 457

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           G     L +K       V   S +ID+  + G I++A
Sbjct: 458 GLQIHSLTIKTMYNKDTVVANS-LIDMYAKCGRINDA 493



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 200/374 (53%), Gaps = 4/374 (1%)

Query: 40  LQSCARERA-PVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           LQ   R  A P+ GK  H  I+  G + D    NIL+NFY +   +  A K+FDEMPQ  
Sbjct: 41  LQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTN 100

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
            +S+ T+   Y+ + +  +A+   + + +EG    + F  +++L    +      C  LH
Sbjct: 101 TISFVTLAQGYSRDHQFHQALHFILRIFKEGH-EVNPFVFTTLLKLLVSMDLAHLCWTLH 159

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
               K     + FVGTAL+D Y+  G +  A  VF+ +  ++ V+W+ MVA + +N  YE
Sbjct: 160 ACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYE 219

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           E+L LF + +++G + N FTIS  + +C GL A   GK VH    K  +  ++F   +L+
Sbjct: 220 ESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALL 279

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           ++YAK G ++DA  +F  + + +++ W+ MI+ +++  RS E + LF +M+Q  + PN  
Sbjct: 280 ELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNF 339

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+ SVL AC+    ++ GK     ++K   +  NVF  + ++D+  + G I  +  L   
Sbjct: 340 TFASVLQACASSVSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEE 398

Query: 399 MPFDATASMWGSLL 412
           +P D     W +++
Sbjct: 399 LP-DRNDVTWNTII 411


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 358/576 (62%), Gaps = 10/576 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL + L +  +  A  +GK  HA  I     ++ +    L++ Y+KC L+  ARK+F+ 
Sbjct: 211 STLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNT 270

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINML-REGKTPYSEFTVSSVLCACAAKRDVF 152
           + ++  V W+ +IG Y  +    +A+AL+ +ML   G  P +  T++++L ACA   D+ 
Sbjct: 271 VNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNP-TPATLATMLRACAQLTDLK 329

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             K+LH   +K+ MD +  VG +L+ +YAKCG++ +A    + M  ++ V++S++++G V
Sbjct: 330 RGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCV 389

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN   E+AL++FR+ Q  G+     T+ +++ AC+ LAAL  G   H      GF ++  
Sbjct: 390 QNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTS 449

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++++DMY+KCG +  +  +F  ++ ++++ WNTMI G+  H   VE + LF+++Q  G
Sbjct: 450 ICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALG 509

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           L P++ T I+VLSACSH G+V +GK +F  M +  N+ P + HY CM+D+L RAG + EA
Sbjct: 510 LKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEA 569

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y  I  MPF     +WG+LLA+CR ++N+E+ E  +K++  + P+  GN +L+SNIY++ 
Sbjct: 570 YTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSV 629

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            RW++ A  R + R    KK    SWVEI         G ++HP+ A I  KL++L+ +M
Sbjct: 630 GRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQM 689

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           KKLGY+ ++   LHDVE+  K+++L++HSEK+A+ FG++   P   I + KNLRIC DCH
Sbjct: 690 KKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCH 749

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S +KF + +  RE  VRD +RFHHF +G C+C DFW
Sbjct: 750 SAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 184/325 (56%), Gaps = 4/325 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+  +A   G++ H     +GL+ D   S  L++ Y+KCG +  A+ +F+ +
Sbjct: 109 TFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSI 168

Query: 95  PQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
               R IV+WN +I +++ +    + +     M + G TP S  T+ S+L        + 
Sbjct: 169 SHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSS-TLVSILPTIGQANALH 227

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + K +H + ++     NV + TALLD+YAKC L+  A ++F ++ ++N+V WS+M+ G+V
Sbjct: 228 QGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYV 287

Query: 213 QNELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            ++   +AL L+     + GL     T+++++ ACA L  L +GK++H  + K+G   + 
Sbjct: 288 LHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDT 347

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              +SL+ MYAKCG + +A      +  K+ V ++ +ISG  ++  + + +++F +MQ +
Sbjct: 348 TVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSS 407

Query: 332 GLHPNEQTYISVLSACSHIGMVEKG 356
           G+ P  +T I++L ACSH+  ++ G
Sbjct: 408 GIAPYLETMIALLPACSHLAALQHG 432



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 187/351 (53%), Gaps = 6/351 (1%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           I  AR VFD++P+  +V WN +I +Y  +G  Q+++ L+++ML+ G TP + FT   +L 
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTP-TNFTFPFLLK 115

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNE 201
           AC++ + +   + +H  A    +  +++V TALL +YAKCG +  A  +F S+   +R+ 
Sbjct: 116 ACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V W++M+A F  + L+ + +    + Q  G+  N  T+ S++       AL QGK +HA 
Sbjct: 176 VAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAY 235

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
             +  F  N+   ++L+DMYAKC  +  A  +F+ + +KN V W+ MI G+  H    + 
Sbjct: 236 YIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDA 295

Query: 322 MILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
           + L++ M    GL+P   T  ++L AC+ +  +++GK     M+K    L      S +I
Sbjct: 296 LALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNS-LI 354

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
            +  + G++  A   +  M    T S + ++++ C      E A +  +Q+
Sbjct: 355 SMYAKCGIMDNAVGFLDEMIAKDTVS-YSAIISGCVQNGYAEKALLIFRQM 404



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 15/240 (6%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A  L T+ A L +C+   A   G  CH   +  G  NDT   N +I+ YSKCG I+ +R+
Sbjct: 410 APYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISRE 469

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FD M  R I+SWNT+I  Y  +G   EA++LF  +   G  P  + T+ +VL AC+   
Sbjct: 470 IFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKP-DDVTLIAVLSACSHSG 528

Query: 150 DVFECKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVT 203
            V E K         F +K  M   +     ++D+ A+ G + +A    + MP   N   
Sbjct: 529 LVTEGKYWFSSMSQNFNIKPRMAHYI----CMVDLLARAGNLDEAYTFIQRMPFVPNVRI 584

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAGL---AALIQGKQVH 259
           W +++A    ++  E    + ++ Q+LG E    F + S I +  G    AA I+  Q H
Sbjct: 585 WGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRH 644



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF  I + +VVLWN MI  ++      + + L+  M Q G+ P   T+  +L ACS 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 350 IGMVEKGKSYFDLMVKQHNVLP---NVFHYSCMIDILGRAGLIHEAYDLILNMPF-DATA 405
           +  ++ G+    L+    ++L    +++  + ++ +  + G +++A  L  ++   D   
Sbjct: 120 LQALQLGR----LIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 406 SMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
             W +++A  S        +  +A  Q  G+ P+++    +L  I  AN
Sbjct: 176 VAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQAN 224


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 347/583 (59%), Gaps = 23/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKI--------IGMGLNNDTLTSNILINFYSKCGLISG 86
           +L   ++ C R      G++ H  +           G       SN L++ Y+K GL+  
Sbjct: 74  SLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDD 133

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
           A ++FD MP+R +V+W T++ +    +GR++EA+   + M R+G  P + +T SSVL AC
Sbjct: 134 ALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAP-NAYTFSSVLGAC 192

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
                +     LH   +K  +D +VFV ++L+D Y K G +    RVF+ M  R+ V W+
Sbjct: 193 GTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWN 249

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           S++AGF Q+     A+ LF R +  G   NQ T++SV+ AC G+  L  G+QVHA + K 
Sbjct: 250 SIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK- 308

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
            +  ++   ++L+DMY KCG + DA  +F  + +++V+ W+TMISG +++ +S E + +F
Sbjct: 309 -YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVF 367

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           + M+  G+ PN  T + VL ACSH G+VE G  YF  M K   + P   H++CM+D+LGR
Sbjct: 368 DLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGR 427

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           AG + EA + I +M  +  A +W +LL +CR +++  LA  AA+++  +EPD+ G  +LL
Sbjct: 428 AGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLL 487

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKL 497
           SN YA  R+W +  ++ K +RD  +KKE  +SW+E        I G  +HP    I  +L
Sbjct: 488 SNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQEL 547

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
            +L+  +  LGY P+TE  L D+   +K++LL +HSEK+A+ FG M    G PIRIMKNL
Sbjct: 548 NRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNL 607

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RICGDCH+F K  S+  GR  I+RD  RFHHF +G+CSC D+W
Sbjct: 608 RICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/559 (38%), Positives = 335/559 (59%), Gaps = 11/559 (1%)

Query: 52  GKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           GK  HA ++  G    +       LI+ Y KC  ++ AR+VFD + +  I+SW  +I +Y
Sbjct: 244 GKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAY 303

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
                  E V LF+ ML EG  P +E T+ S++  C     +   K LH F L+     +
Sbjct: 304 IHCNNLNEGVRLFVKMLGEGMFP-NEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLS 362

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + + TA +D+Y KCG +  A  VF+S   ++ + WS+M++ + QN   +EA  +F     
Sbjct: 363 LVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTG 422

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G+  N+ T+ S++  CA   +L  GK +H+ + K G   +M   +S VDMYA CG +  
Sbjct: 423 CGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDT 482

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A+ +F+   ++++ +WN MISGF+ H      + LFE+M+  G+ PN+ T+I  L ACSH
Sbjct: 483 AHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSH 542

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G++++GK  F  MV +    P V HY CM+D+LGRAGL+ EA++LI +MP     +++G
Sbjct: 543 SGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFG 602

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           S LA+C+ ++N++L E AAKQ   +EP  +G ++L+SNIYA+  RW +VA  R+ ++D  
Sbjct: 603 SFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEG 662

Query: 470 VKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           + KE   S +E        I G R HP   ++Y  ++++ E+++  GY P+    LH+++
Sbjct: 663 IVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNID 722

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
             +K   L +HSEKLA+ +GL+   PGVPIRI+KNLR+C DCH+  K  S+I GRE IVR
Sbjct: 723 KEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVR 782

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF  GSCSC D+W
Sbjct: 783 DRNRFHHFKEGSCSCCDYW 801



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 199/385 (51%), Gaps = 13/385 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            + + L++C    + + G+  H  ++  G + D    N LI  YS+ G ++ AR +FD++
Sbjct: 126 VIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKI 185

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW+T+I SY  +G   EA+ L  +M      P SE  + S+    A   D+   
Sbjct: 186 ENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKP-SEIGMISITHVLAELADLKLG 244

Query: 155 KQLHVFALKAAM--DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           K +H + ++        V + TAL+D+Y KC  ++ A RVF+ + + + ++W++M+A ++
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYI 304

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
                 E + LF +    G+  N+ T+ S++  C    AL  GK +HA   + GF  ++ 
Sbjct: 305 HCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLV 364

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A++ +DMY KCG V  A  VF   + K++++W+ MIS ++++    E   +F  M   G
Sbjct: 365 LATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCG 424

Query: 333 LHPNEQTYISVLSACSHIGMVEKGK---SYFDLM-VKQHNVLPNVFHYSCMIDILGRAGL 388
           + PNE+T +S+L  C+  G +E GK   SY D   +K   +L   F     +D+    G 
Sbjct: 425 IRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSF-----VDMYANCGD 479

Query: 389 IHEAYDLILNMPFDATASMWGSLLA 413
           I  A+ L      D   SMW ++++
Sbjct: 480 IDTAHRLFAEAT-DRDISMWNAMIS 503



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 158/316 (50%), Gaps = 13/316 (4%)

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
           +I SY  N    +A  ++  M R   T    F + SVL AC         +++H F +K 
Sbjct: 95  LITSYIKNNCPADAAKIYAYM-RGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKN 153

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
               +VFV  AL+ +Y++ G ++ A  +F+ +  ++ V+WS+M+  + ++ L +EAL L 
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLL 213

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGSNMFAASSLVDMYA 282
           R   V+ ++ ++  + S+    A LA L  GK +HA + + G    S +   ++L+DMY 
Sbjct: 214 RDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYV 273

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           KC  +  A  VF G+ + +++ W  MI+ +       E + LF KM   G+ PNE T +S
Sbjct: 274 KCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLS 333

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           ++  C   G +E GK      ++    L  V   +  ID+ G+ G +  A  +     FD
Sbjct: 334 LVKECGTAGALELGKLLHAFTLRNGFTLSLVL-ATAFIDMYGKCGDVRSARSV-----FD 387

Query: 403 ATAS----MWGSLLAS 414
           +  S    MW ++++S
Sbjct: 388 SFKSKDLMMWSAMISS 403



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 141/283 (49%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + ++ C    A   GK+ HA  +  G     + +   I+ Y KCG +  AR VFD  
Sbjct: 330 TMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSF 389

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + ++ W+ +I SY  N    EA  +F++M   G  P +E T+ S+L  CA    +   
Sbjct: 390 KSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRP-NERTMVSLLMICAKAGSLEMG 448

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H +  K  +  ++ + T+ +D+YA CG I  A R+F    +R+   W++M++GF  +
Sbjct: 449 KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMH 508

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFA 273
              E AL LF   + LG+  N  T    + AC+    L +GK++ H ++ + GF   +  
Sbjct: 509 GHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEH 568

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRH 315
              +VD+  + G + +A+ +   +  + N+ ++ + ++    H
Sbjct: 569 YGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLH 611



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E +QLH   +K + + +  V  A L+ Y+                  N    S ++  ++
Sbjct: 58  ETQQLHGHFIKTSSNCSYRVPLAALESYSS-----------------NAAIHSFLITSYI 100

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +N    +A  ++   +    E + F I SV+ AC  + + + G++VH  + K GF  ++F
Sbjct: 101 KNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVF 160

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+ MY++ G +  A  +F  IE K+VV W+TMI  + R     E + L   M    
Sbjct: 161 VCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMR 220

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKS 358
           + P+E   IS+    + +  ++ GK+
Sbjct: 221 VKPSEIGMISITHVLAELADLKLGKA 246


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C   +    GK  H  ++      D      L+  Y++CG    A + F +M
Sbjct: 149 TFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDM 208

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  ++ W+ +I  +  +G+ ++A+ +F  M R    P ++FT SSVL A A    +   
Sbjct: 209 PKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIP-NQFTFSSVLQASADIESLDLS 267

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H  ALKA +  +VFV  AL+  YAKCG I  +  +FE++ +RN+V+W++++  +VQ 
Sbjct: 268 KTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQL 327

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E AL LF       ++  + T SS++ ACA LAAL  G QVH +  KT +G ++   
Sbjct: 328 GDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVG 387

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG + DA F+F  ++ ++ V WN +I G+S H   VE + +F  M++    
Sbjct: 388 NALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCK 447

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+E T++ VLSACS+ G +++GK YF  M + + + P + HY+CM+ ++GR+G + +A  
Sbjct: 448 PDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVK 507

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I ++PF+ +  +W +LL +C  + ++EL  I+A+++  +EP +  +H+LLSNIYA  RR
Sbjct: 508 FIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARR 567

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W  VA  RK ++   VKKE   SW+E +G          +H  +  I   LE L  + +K
Sbjct: 568 WGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRK 627

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L DVED  K+ LL  HSE+LAL FGL+ +  G PIRI+KNLRIC DCHS 
Sbjct: 628 AGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSV 687

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I GR+ IVRD+NRFHHF NGSCSC D+W
Sbjct: 688 IKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 184/348 (52%), Gaps = 16/348 (4%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G++ H  ++ +G  ++T     LI+ YS  G +S AR+VFDE+  + +VSW  +I SY  
Sbjct: 65  GRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAE 124

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    EA+  F  M   G  P + FT + VL AC   ++    K +H   LK   +R+++
Sbjct: 125 NDCFSEALEFFSQMRVAGFKP-NNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLY 183

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF---RRAQ 228
           VG  LL++Y +CG   DA R F  MP+ + + WS M++ F Q+   E+AL +F   RRA 
Sbjct: 184 VGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAF 243

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
           V+    NQFT SSV+ A A + +L   K +H    K G  +++F +++L+  YAKCGC+ 
Sbjct: 244 VIP---NQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIE 300

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            +  +F  + ++N V WNT+I  + +       + LF  M +  +   E TY S+L AC+
Sbjct: 301 QSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACA 360

Query: 349 HIGMVEKGKSYFDLMVK----QHNVLPNVFHYSCMIDILGRAGLIHEA 392
            +  +E G     L  K    Q   + N      +ID+  + G I +A
Sbjct: 361 TLAALELGLQVHCLTAKTIYGQDVAVGNA-----LIDMYAKCGSIKDA 403



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 174/325 (53%), Gaps = 3/325 (0%)

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFDEMP+R  VS+ T+I  Y  + +  EA  LF  +  EG    + F  ++VL    +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGH-ELNPFVFTTVLKLLVSME 60

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
                + +H   LK     N F+GTAL+D Y+  G +S A  VF+ +  ++ V+W+ M+A
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            + +N+ + EAL  F + +V G + N FT + V+ AC GL     GK VH  + KT +  
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +++    L+++Y +CG   DA+  F  + + +V+ W+ MIS F++  +S + + +F +M+
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           +A + PN+ T+ SVL A + I  ++  K+     +K   +  +VF  + ++    + G I
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKA-GLSTDVFVSNALMACYAKCGCI 299

Query: 390 HEAYDLILNMPFDATASMWGSLLAS 414
            ++ +L   +  D     W +++ S
Sbjct: 300 EQSMELFEALS-DRNDVSWNTIIVS 323


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/582 (38%), Positives = 341/582 (58%), Gaps = 9/582 (1%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
            A + +  T+  T++SC+R      G+   A     G   D    N LI+ Y+ CG +  
Sbjct: 165 TAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVA 224

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  +F  +  + +++WN +I  Y  NG  +E V +F  ML E + P+ E T+ SV  AC 
Sbjct: 225 AHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGML-EVRAPFDEVTLLSVATACG 283

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              D    + +  +A +  M R+  + TAL+D+YAKCG +  A R+F+ M  R+ V WS+
Sbjct: 284 RLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSA 343

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M++G+ Q++   EAL +F   Q   +  N  T+ SV+ ACA L AL  GK VH+ + +  
Sbjct: 344 MISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKD 403

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
               +   ++LVD YAKCGC+ DA   F  +  +N   W  +I G + + RS E + LF 
Sbjct: 404 LPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFS 463

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            M +A + P + T+I VL ACSH  +VE+G+ +F  M + + + P + HY CM+D+LGRA
Sbjct: 464 SMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRA 523

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           GLI EAY  I NMP +  A +W +LL++C  ++N+E+ E A KQ+  ++P ++GN++LLS
Sbjct: 524 GLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLS 583

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLE 498
           N YA+  +W+  A  RK +++  V+K    S +E++G           HP++ EIY K+ 
Sbjct: 584 NTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVH 643

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           +++E +K +GY P T     DV++  KQ  + HHSEKLA+ FGLM   PG  IR+ KNLR
Sbjct: 644 EMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLR 703

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +C DCHS  K  S++  RE IVRD NRFHHF +G CSC D+W
Sbjct: 704 VCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 185/346 (53%), Gaps = 4/346 (1%)

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R   S+N +I S+   G  ++A+ LF+ ML +      + TV++ + +C+   D+   
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +A K     + FV  +L+ +YA CG +  A  +F ++  +  + W++M+AG+V+N
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             ++E + +F+    +   +++ T+ SV  AC  L     G+ +     + G   +   A
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLA 310

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG +  A  +F  +  ++VV W+ MISG+++  R  E + +F +MQ   ++
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T +SVLSAC+ +G +E GK +    +++ ++   V   + ++D   + G I +A  
Sbjct: 371 PNDVTMVSVLSACAVLGALETGK-WVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVK 429

Query: 395 LILNMPFDATASMWGSLLAS-CRNYRNLELAEIAAKQL-FGMEPDN 438
              +MP   T + W +L+     N R+ E  E+ +  L   +EP +
Sbjct: 430 AFESMPVRNTWT-WTALIKGMASNGRSREALELFSSMLEANIEPTD 474


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/561 (40%), Positives = 338/561 (60%), Gaps = 17/561 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA ++      +   +N L++FYSKC  +   R++FDEMP+R  VS+N II +Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 112 NGREQEAVALFINMLREG----KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
           N      + LF  M + G      PY+     ++L    +  DV   KQ+H   +   + 
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYA-----TMLSVAGSLPDVHIGKQIHAQLVLLGLA 369

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
               +G AL+D+Y+KCG++  A   F +  E++ ++W++++ G+VQN  +EEAL LF   
Sbjct: 370 SEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 429

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  GL  ++ T SS+I A + LA +  G+Q+H+ L ++G+ S++F+ S LVDMYAKCGC+
Sbjct: 430 RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            +A   F  + E+N + WN +IS ++ +  +   + +FE M   G +P+  T++SVL+AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           SH G+ ++   YF LM  Q+++ P   HY+C+ID LGR G   +   +++ MPF A   +
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPII 609

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           W S+L SCR + N ELA +AA +LFGMEP +A  +++LSNIYA   +WE+ A  +K++RD
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 468 SEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             V+KE   SWVEIK K           P I EI  +L++L +EM K GYKP+    LH 
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHM 729

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           V+   K E L +HSE+LA+ F LM    G PIRIMKNL  C DCH+ +K  S+I  R+ I
Sbjct: 730 VDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDII 789

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           VRD  RFHHF +G CSC D+W
Sbjct: 790 VRDSRRFHHFKDGVCSCGDYW 810



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 197/379 (51%), Gaps = 6/379 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H   I  GL+      N L++ Y K GL++ AR+VF EM  +  V++N ++   +  G  
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +A+ LF  M R G  P + FT SS+L   A    +    Q+H   L++    NVFV  +
Sbjct: 218 TQALQLFAAMRRAG-IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+KC  + D  R+F+ MPER+ V+++ ++A +  N+     L LFR  Q LG +  
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
               ++++     L  +  GKQ+HA L   G  S     ++L+DMY+KCG +  A   FS
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
              EK+ + W  +I+G+ ++ +  E + LF  M++AGL P+  T+ S++ A S + M+  
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+     +++      +VF  S ++D+  + G + EA      MP   + S W +++++ 
Sbjct: 457 GRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNAVISAY 514

Query: 416 RNYRNLELAEIAAKQLFGM 434
            +Y     A+ A K   GM
Sbjct: 515 AHYGE---AKNAIKMFEGM 530



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 224/454 (49%), Gaps = 43/454 (9%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N++++ YS  G +  A+ +F   P R   +W  ++ ++   GR  +A++LF  ML EG  
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 132 PYSEFTVSSVL--CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
           P    TV++VL    C           LH FA+K  +D +VFV   LLD Y K GL++ A
Sbjct: 138 P-DRVTVTTVLNLPGCTVP-------SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            RVF  M +++ VT+++M+ G  +  L+ +AL LF   +  G+    FT SS++   AG+
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
           A L+ G QVHA++ ++    N+F  +SL+D Y+KC C+ D   +F  + E++ V +N +I
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 309

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV----K 365
           + ++ +  +  V+ LF +MQ+ G       Y ++LS    +  V  GK     +V     
Sbjct: 310 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 369

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLELA 424
             ++L N      +ID+  + G++  A     N   + +A  W +L+    +N ++ E  
Sbjct: 370 SEDLLGNA-----LIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALITGYVQNGQHEE-- 421

Query: 425 EIAAKQLF------GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
              A QLF      G+ PD A      S+I  A+     +   R+L   S + +   KS 
Sbjct: 422 ---ALQLFSDMRRAGLRPDRA----TFSSIIKASSSLAMIGLGRQL--HSYLIRSGYKSS 472

Query: 479 VEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
           V   G      + ++Y+K   L E ++     PE
Sbjct: 473 V-FSGS----VLVDMYAKCGCLDEALRTFDEMPE 501



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 14/237 (5%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +N+F    +L  Y+  G +  A  +F S P RN  TW+ M+          +AL LFR  
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 228 QVLGLEYNQFTISSVI----CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
              G+  ++ T+++V+    C    L         H    K G  +++F  ++L+D Y K
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTVPSL---------HPFAIKFGLDTHVFVCNTLLDAYCK 182

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
            G +  A  VF  + +K+ V +N M+ G S+     + + LF  M++AG+     T+ S+
Sbjct: 183 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           L+  + +  +  G     L+++  +VL NVF  + ++D   +   + +   L   MP
Sbjct: 243 LTVAAGMAHLLLGHQVHALVLRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRLFDEMP 298


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/592 (39%), Positives = 345/592 (58%), Gaps = 44/592 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA ++  GL    L  + ++ FY+  G I  +  VF+ + +   + +N++I +Y  
Sbjct: 89  GHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYAR 148

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G  +  VA + +M   G T    FT   VL +      V+  K +H   L+  +  +++
Sbjct: 149 YGFAERTVATYFSMHSWGFTG-DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLY 207

Query: 172 VGTALLDVYAKCGLISDASRVF-------------------------------ESMPERN 200
           V T+L+ +Y KCG I+DA +VF                               E MP RN
Sbjct: 208 VATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 267

Query: 201 EVTWSSMVAGFVQNELYEEALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
            V+W++M++G+ Q+ L ++AL LF     +  G+  N  TI SV+ ACA L+ L +G+Q+
Sbjct: 268 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 327

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHA 316
           H + C+ G  SN     +L  MYAKCG +VDA   F  +   EKN++ WNTMI+ ++ + 
Sbjct: 328 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 387

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
             ++ +  F +M QAG+ P++ T+  +LS CSH G+V+ G  YF+ M   +++ P V HY
Sbjct: 388 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 447

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           +C+ D+LGRAG + EA  L+  MP  A  S+WGSLLA+CR +RNLE+AE AA++LF +EP
Sbjct: 448 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEP 507

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHP 488
           +N GN++LLSN+YA   RW+EV + R +++    KK    SW+EI GK         +HP
Sbjct: 508 ENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHP 567

Query: 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG 548
           +  EIY  LE L E+MK  GY P+T + LHD+ +  K+  LI HSEKLA+ FG++     
Sbjct: 568 QGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAE 627

Query: 549 VPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +R+ KNLRICGDCH+ M F S I GRE IVRD+NRFHHF  G CSC D+W
Sbjct: 628 TVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 5/203 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA+     RG+  H     MGLN++      L   Y+KCG +  AR  FD++
Sbjct: 307 TIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 366

Query: 95  --PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV- 151
              ++ +++WNT+I +Y + G   +AV+ F  M++ G  P  + T + +L  C+    V 
Sbjct: 367 NRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQP-DDITFTGLLSGCSHSGLVD 425

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
              K  +  +   +++  V     + D+  + G +++AS++   MP       W S++A 
Sbjct: 426 VGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 485

Query: 211 FVQNELYEEALILFRRAQVLGLE 233
             ++   E A    R+  VL  E
Sbjct: 486 CRKHRNLEMAETAARKLFVLEPE 508



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           GL  L  G QVHA +   G        S +V  YA  G +  +  VF+GI E + +L+N+
Sbjct: 82  GLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNS 141

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI  ++R+  +   +  +  M   G   +  T+  VL +   +  V  GK    L+++  
Sbjct: 142 MIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRI- 200

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            +  +++  + +I + G+ G I++A  +  NM     +S W +LLA
Sbjct: 201 GLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS-WNALLA 245


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 364/574 (63%), Gaps = 16/574 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C       +GK+ H  ++     ND +  N ++  Y+KCG +  AR+VFDEM  + +
Sbjct: 98  LKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDV 157

Query: 100 VSWNTIIGSYTTNGREQEA---VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           V+W ++I  Y+ +G    A   + LF+ M+R+G  P +EF +SS++  C       + KQ
Sbjct: 158 VTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRP-NEFALSSLVKCCGFLGSCVDGKQ 216

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H    K     NVFVG++L+D+YA+CG + ++  VF+ +  +NEV+W+++++GF +   
Sbjct: 217 IHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGE 276

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            EEAL LF + Q  G    +FT S+++C+ +   +L QGK +HA + K+G     +  ++
Sbjct: 277 GEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNT 336

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHP 335
           L+ MYAK G + DA  VF  + + +VV  N+M+ G+++H    E + LFE+M     + P
Sbjct: 337 LLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEP 396

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N+ T++SVL+ACSH G++++G  YF+LM K++ + P + HY+ ++D+ GRAGL+ +A   
Sbjct: 397 NDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLDQAKSF 455

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           I  MP +  A++WG+LL + + ++N E+   AA+++  ++P   G H LLSNIYA+  +W
Sbjct: 456 IEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQW 515

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKKL 507
           ++VA+ RK ++DS +KKE + SWVEI+           +HP+  ++Y   E L +++K++
Sbjct: 516 KDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEI 575

Query: 508 GYKPETEHDLHDVEDSRKQEL-LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           GY P+T H +H   D +++EL L +HSEKLAL F L+   PG  IRIMKN+R+CGDCHS 
Sbjct: 576 GYVPDTSH-VHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSA 634

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K+ S +  RE IVRD NRFHHF +GSCSC D+W
Sbjct: 635 IKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 146/285 (51%), Gaps = 3/285 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + ++ C    + V GK  H      G   +    + L++ Y++CG +  +R VFDE+ 
Sbjct: 198 LSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELE 257

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            +  VSWN +I  +   G  +EA+ LF+ M REG    +EFT S++LC+ +    + + K
Sbjct: 258 SKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGA-TEFTYSALLCSSSTTGSLEQGK 316

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
            LH   +K+      +VG  LL +YAK G I DA +VF+ + + + V+ +SM+ G+ Q+ 
Sbjct: 317 WLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHG 376

Query: 216 LYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           L +EA+ LF    + + +E N  T  SV+ AC+    L +G     ++ K G    +   
Sbjct: 377 LGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHY 436

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMISGFSRHARS 318
           +++VD++ + G +  A  F+     E N  +W  ++     H  +
Sbjct: 437 TTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNT 481



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           LE ++   + ++  C  L  L QGK VH  L  + F +++   +S++ MYAKCG +  A 
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 292 FVFSGIEEKNVVLWNTMISGFSRH---ARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            VF  +  K+VV W +MI+G+S+    + +   ++LF +M + GL PNE    S++  C 
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            +G    GK       K +    NVF  S ++D+  R G + E+
Sbjct: 207 FLGSCVDGKQIHGCCWK-YGFQENVFVGSSLVDMYARCGELRES 249



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 6/183 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           ATE  T  A L S +   +  +GK  HA ++  G        N L++ Y+K G I  A+K
Sbjct: 294 ATEF-TYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKK 352

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD + +  +VS N+++  Y  +G  +EAV LF  M+   +   ++ T  SVL AC+   
Sbjct: 353 VFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAG 412

Query: 150 DVFECKQLHVFAL--KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
            + E   L+ F L  K  ++  +   T ++D++ + GL+  A    E MP E N   W +
Sbjct: 413 LLDE--GLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGA 470

Query: 207 MVA 209
           ++ 
Sbjct: 471 LLG 473


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/574 (37%), Positives = 346/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C    A   G+  H ++I  G   +    ++LI+ Y+K G +  A  +   +
Sbjct: 417 TYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +VSW  +I  Y  +    EA+  F  ML  G         SS + ACA  + + + 
Sbjct: 477 TEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRG-IQSDNIGFSSAISACAGIQALNQG 535

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  +  +    ++ +G AL+ +YA+CG I +A   FE +  ++ ++W+ +++GF Q+
Sbjct: 536 RQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQS 595

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+AL +F +     LE + FT  S + A A +A + QGKQ+HA++ K GF S++  +
Sbjct: 596 GYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVS 655

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+  YAKCG + DA   F  + EKN V WN MI+G+S+H    E + LFEKM+Q G  
Sbjct: 656 NALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEM 715

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T++ VLSACSH+G+V KG  YF+ M K+H ++P   HY+C++D++ RAG +  A  
Sbjct: 716 PNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARK 775

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +  A++W +LL++C  ++N+E+ E AA+ L  +EP+++  ++LLSN+YA + +
Sbjct: 776 FIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGK 835

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W+   + R+++R+  VKKE  +SW+E+K        G R HP   +IY  L +L ++  +
Sbjct: 836 WDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAE 895

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY  +    L+DVE  +K   +  HSEKLA+TFGL+ L   VPI +MKNLR+C DCHS+
Sbjct: 896 IGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSW 955

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KF S+I+ R  IVRD  RFHHF  G CSC D+W
Sbjct: 956 IKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 131/417 (31%), Positives = 220/417 (52%), Gaps = 7/417 (1%)

Query: 27  NANATELSTLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           N + TE+S   + L++C+  R  +R  +  HA+II  GL    + SN LI  Y+K GLI 
Sbjct: 106 NVSPTEIS-FASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLII 164

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            ARKVFD +  +  VSW  +I  ++ NG E+EA+ LF  M   G  P + +  SSVL  C
Sbjct: 165 SARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFP-TPYVFSSVLSGC 223

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
              +     +QLH    K       +V  AL+ +Y++      A +VF  M  ++EV+++
Sbjct: 224 TKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFN 283

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           S+++G  Q    + AL LF + +   L+ +  T++S++ ACA   AL +G+Q+H+ + K 
Sbjct: 284 SLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA 343

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G  S+M    +L+D+Y  C  +  A+ +F   + +NVVLWN M+  F +     E   +F
Sbjct: 344 GISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIF 403

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
            +MQ  GL PN+ TY S+L  C+ +G ++ G+     ++K      NV+  S +ID+  +
Sbjct: 404 RQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKT-GFQFNVYVCSVLIDMYAK 462

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAG 440
            G +  A+ ++  +  D   S W +L++    +     A    K++   G++ DN G
Sbjct: 463 HGKLDTAHVILRTLTEDDVVS-WTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIG 518



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 203/379 (53%), Gaps = 3/379 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA   A  +G+  H+ +I  G+++D +    L++ Y  C  I  A ++F   
Sbjct: 316 TVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTA 375

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +V WN ++ ++       E+  +F  M  +G  P ++FT  S+L  C +   +   
Sbjct: 376 QTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIP-NQFTYPSILRTCTSVGALDLG 434

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K     NV+V + L+D+YAK G +  A  +  ++ E + V+W+++++G+ Q+
Sbjct: 435 EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQH 494

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L+ EAL  F+     G++ +    SS I ACAG+ AL QG+Q+HA    +G+  ++   
Sbjct: 495 NLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG 554

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV +YA+CG + +AY  F  I+ K+ + WN +ISGF++     + + +F +M +A L 
Sbjct: 555 NALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLE 614

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            +  T+ S +SA ++I  +++GK    +++K+     ++   + +I    + G I +A  
Sbjct: 615 ASFFTFGSAVSAAANIANIKQGKQIHAMIIKR-GFDSDIEVSNALITFYAKCGSIEDARR 673

Query: 395 LILNMPFDATASMWGSLLA 413
               MP     S W +++ 
Sbjct: 674 EFCEMPEKNDVS-WNAMIT 691



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 196/383 (51%), Gaps = 4/383 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C    + V  K  H KI+ +G  N+++  N L++ Y   G + G  KVF++MP R +
Sbjct: 17  LDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSV 76

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLH 158
            SW+ II  +         + LF  M+ E  +P +E + +SVL AC+  R  +   +Q+H
Sbjct: 77  RSWDKIISGFMEKKMSNRVLDLFSCMIEENVSP-TEISFASVLRACSGHRIGIRYAEQIH 135

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +   +  +  +   L+ +YAK GLI  A +VF+++  ++ V+W +M++GF QN   E
Sbjct: 136 ARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEE 195

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA+ LF      G+    +  SSV+  C  +     G+Q+HA++ K G     +  ++LV
Sbjct: 196 EAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALV 255

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            +Y++    V A  VFS ++ K+ V +N++ISG ++   S   + LF KM++  L P+  
Sbjct: 256 TLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCV 315

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  S+LSAC+  G + KG+     ++K   +  ++     ++D+      I  A+++ L 
Sbjct: 316 TVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLDLYVNCSDIKTAHEMFLT 374

Query: 399 MPFDATASMWGSLLASCRNYRNL 421
              +    +W  +L +     NL
Sbjct: 375 AQTENVV-LWNVMLVAFGKLDNL 396



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 1/226 (0%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L  C     + ECK+LH   LK        +   L+DVY   G +    +VFE MP R+
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVH 259
             +W  +++GF++ ++    L LF       +   + + +SV+ AC+G    I+  +Q+H
Sbjct: 76  VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIH 135

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A +   G   +   ++ L+ +YAK G ++ A  VF  +  K+ V W  MISGFS++    
Sbjct: 136 ARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEE 195

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           E + LF +M  AG+ P    + SVLS C+ I + + G+    L+ K
Sbjct: 196 EAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFK 241


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/579 (38%), Positives = 344/579 (59%), Gaps = 31/579 (5%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            +L+T+ + L  CA       GK  H+  I          SN L++ YSKCG + GA +V
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F++M +R +VSW ++I  YT +GR   A+ L   M +EG        ++S+L ACA    
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG-VKLDVVAITSILHACARSGS 367

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K +H +     M+ N+FV  AL+D+YAKCG +  A+ VF +M  ++ ++W++M+  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE 427

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
                                L+ +  T++ V+ ACA L+AL +GK++H  + + G+ S+
Sbjct: 428 ---------------------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSD 466

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
              A++LVD+Y KCG +  A  +F  I  K++V W  MI+G+  H    E +  F +M+ 
Sbjct: 467 RHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 526

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ P+E ++IS+L ACSH G++E+G  +F +M    N+ P + HY+CM+D+L R G + 
Sbjct: 527 AGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLS 586

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +AY+ I  +P    A++WG+LL  CRNY ++ELAE  A+++F +EP+N+G ++LL+NIYA
Sbjct: 587 KAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYA 646

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN---------HPRIAEIYSKLEKLV 501
              +WEEV R R+ I    ++K    SW+EIKGK N         HP    I S L+K+ 
Sbjct: 647 EAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMR 706

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            +MK+ G+ P+T++ L + ++ +K+  L  HSEKLA+ FGL+ L P   IR+ KNLR+CG
Sbjct: 707 RKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCG 766

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH   KF S+   RE ++RD NRFHHF +G CSC  FW
Sbjct: 767 DCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 213/473 (45%), Gaps = 82/473 (17%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E  T  + LQ CA  ++   GK  H+ I    +  D      L++FY+ CG +   R+VF
Sbjct: 98  ETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157

Query: 92  DEMPQ---------------------------------------------------RCIV 100
           D M +                                                   R ++
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SWN++I  Y +NG  +  + ++  M+  G       T+ SVL  CA    +   K +H  
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           A+K++ +R +     LLD+Y+KCG +  A RVFE M ERN V+W+SM+AG+ ++   + A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           + L ++ +  G++ +   I+S++ ACA   +L  GK VH  +      SN+F  ++L+DM
Sbjct: 337 IKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           YAKCG +  A  VFS +  K+++ WNTMI                       L P+ +T 
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTM 435

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEAYDLILNM 399
             VL AC+ +  +E+GK     +++  N   +  H +  ++D+  + G++  A  L   +
Sbjct: 436 ACVLPACASLSALERGKEIHGYILR--NGYSSDRHVANALVDLYVKCGVLGLARLLFDMI 493

Query: 400 PFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           P     S W  ++A      Y N  +A     +  G+EPD       +S +YA
Sbjct: 494 PSKDLVS-WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS---FISILYA 542



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 202/449 (44%), Gaps = 66/449 (14%)

Query: 61  GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI----VSWNTIIGSYTTNGREQ 116
           G  ++  +L + I    +S C  I          P R I      +N  I  +   G  +
Sbjct: 29  GCFIHKPSLKTKIFSPIFSSCIPIR-----ISATPTRTIDHQVTDYNAKILHFCQLGDLE 83

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
            A+ L I M +  K+     T SSVL  CA  +   + K++H      ++  +  +G  L
Sbjct: 84  NAMEL-ICMCK--KSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKL 140

Query: 177 LDVYAKCGLISDASRVFESM---------------------------------------- 196
           +  YA CG + +  RVF++M                                        
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKR 200

Query: 197 PE-----------RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           PE           R+ ++W+SM++G+V N L E  L ++++   LG++ +  TI SV+  
Sbjct: 201 PESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG 260

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA    L  GK VH++  K+ F   +  +++L+DMY+KCG +  A  VF  + E+NVV W
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            +MI+G++R  RS   + L ++M++ G+  +     S+L AC+  G ++ GK   D  +K
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IK 379

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR-NYRNLELA 424
            +N+  N+F  + ++D+  + G +  A  +   M      S W +++   + + R +   
Sbjct: 380 ANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIIS-WNTMIGELKPDSRTMACV 438

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             A   L  +E     +  +L N Y+++R
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDR 467


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 349/579 (60%), Gaps = 19/579 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKVF 91
           T+ + + +CA + +   G+  H+ ++ +GL +DT  S  L++ Y+K  +   +  ARKVF
Sbjct: 251 TMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVF 310

Query: 92  DEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
             MP   ++SW  +I  Y    G+E  AV L   ML E   P +  T SS+L ACA   D
Sbjct: 311 KRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEP-NHLTYSSLLKACANLSD 369

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
               +Q+H   +K ++     VG AL+ +YA+ G + +A + F+ + ERN ++ SS +  
Sbjct: 370 QDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGE 429

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
             ++     + I     + + +  + FT +S++ A A +    +G+Q+HA+  KTGF S+
Sbjct: 430 TGRSNASWSSQI-----ESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESD 484

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQ 329
              ++SLV MY++CG + DA   F  +E+  NV+ W ++IS  ++H  +   + LF  M 
Sbjct: 485 KGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMI 544

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            +G+ PN+ TYI+VLSACSH+G+V++GK YF  M K H ++P + HY+CM+D+L R+GL+
Sbjct: 545 LSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLV 604

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP  A A +W +LL +CR Y N+E+ EIAA+ +  +EP +   ++LLSN+Y
Sbjct: 605 QEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLY 664

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLV 501
           A    W+EVAR R L+R   + KE   SW+ +         G  +HPR  EIY+KL  L+
Sbjct: 665 AHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLI 724

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            E+K +GY P+T   LHD+ D  K++ L+ HSEK+A+ FGL+   P  PIRI KNLR+C 
Sbjct: 725 REIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCA 784

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHS +K+ S+  GRE I+RD NRFH   +G CSC ++W
Sbjct: 785 DCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 179/354 (50%), Gaps = 20/354 (5%)

Query: 52  GKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQ-RCIVSWNTIIGSY 109
           G+  H +++G   L+ D L +N L+  YSKCG +  AR+VFD M   R +VSW  +    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV--FALKAAM- 166
           T NG EQEA+ L   ML  G  P + FT+ +   AC    ++F      V  FA+K    
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRP-NAFTLCAAAHACFPG-ELFRSSGGTVLGFAIKTGFW 179

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
             +V VG AL+D++A+ G +  A +VF  + ER  V W+ M+  +VQ     +A+ LF  
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
               G E + +T+SS++ ACA   +   G+Q+H+++ + G  S+   +  LVDMY K   
Sbjct: 240 MLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQM 299

Query: 287 VVD---AYFVFSGIEEKNVVLWNTMISGFSR-HARSVEVMILFEKMQQAGLHPNEQTYIS 342
                 A  VF  +   NV+ W  +ISG+ +   +    + L  +M    + PN  TY S
Sbjct: 300 EQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSS 359

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQH----NVLPNVFHYSCMIDILGRAGLIHEA 392
           +L AC+++   + G+     ++K      NV+ N      ++ +   +G + EA
Sbjct: 360 LLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNA-----LVSMYAESGCMEEA 408


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/619 (38%), Positives = 355/619 (57%), Gaps = 43/619 (6%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           +   S N N    ST+   + S  R    + G+  H +I   G  +     + L++ Y+K
Sbjct: 129 LKDGSVNLNRITFSTM--LILSSNRGFVDL-GRQIHGQIFKFGYQSYLFVGSPLVDMYAK 185

Query: 81  CGLISGARKVFDEMPQRCIV-------------------------------SWNTIIGSY 109
            G I+ A ++F+E+P++ IV                               SW TII   
Sbjct: 186 TGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGL 245

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           T NG  +EAV  F  M  EG     +FT  SVL AC     + E KQ+H + ++     N
Sbjct: 246 TQNGLFKEAVDKFKEMGIEGFC-MDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           +FVG+ALLD+Y KC  +  A  VF  M  +N ++W++M+ G+ QN   EEA+ +F   Q 
Sbjct: 305 IFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQR 364

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             +  + FT+ SVI +CA LA+L +G Q H     +G    +  +++L+ +Y KCG +  
Sbjct: 365 NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEH 424

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A+ +F  ++ ++ V W  ++SG+++  ++ E + LFE M   G+ P+  T++ VLSACS 
Sbjct: 425 AHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSR 484

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+VEKG  YF+ MVK+H + P   HY+CMID+L RAG + EA + I  MPF   A  W 
Sbjct: 485 AGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWA 544

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL+SCR   NLE+ + AA+ L  +EP N  +++LLS+IYAA  +W++VA+ RK +R+  
Sbjct: 545 TLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMG 604

Query: 470 VKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           VKKE   SW++ K K        R+ P   +IY+KLE L  +M + GY P+    LHDVE
Sbjct: 605 VKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVE 664

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
            S K ++L HHSEKLA+ FGL+ +  G+ IR++KNLR+CGDCH+  K+ SRI  RE +VR
Sbjct: 665 KSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVR 724

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D  RFH F +G CSC DFW
Sbjct: 725 DAVRFHLFKDGVCSCGDFW 743



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 200/373 (53%), Gaps = 33/373 (8%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N L++ YSK G +   ++VFD MP   +VSWN+++  Y  NG   E+V ++  ML++G  
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             +  T S++L   + +  V   +Q+H    K      +FVG+ L+D+YAK G I+DA+R
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANR 194

Query: 192 VFE-------------------------------SMPERNEVTWSSMVAGFVQNELYEEA 220
           +FE                               +MPE++ ++W++++ G  QN L++EA
Sbjct: 195 IFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEA 254

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           +  F+   + G   +QFT  SV+ AC G  AL +GKQ+HA + +T +  N+F  S+L+DM
Sbjct: 255 VDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDM 314

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y KC  V  A  VF  +  KNV+ W  M+ G+ ++  S E + +F  MQ+  +HP++ T 
Sbjct: 315 YCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTL 374

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            SV+S+C+++  +E+G  +    +    ++  V   + +I + G+ G +  A+ L   M 
Sbjct: 375 GSVISSCANLASLEEGAQFHGQALAS-GLICFVTVSNALITLYGKCGSLEHAHQLFHEMK 433

Query: 401 FDATASMWGSLLA 413
                S W +L++
Sbjct: 434 IRDEVS-WTALVS 445



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 146/322 (45%), Gaps = 71/322 (22%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           N+F    LL  Y+K G + D  RVF+SMP  + V+W+S+++G+  N L  E++ ++    
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 229 VLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
             G +  N+ T S+++   +    +  G+Q+H  + K G+ S +F  S LVDMYAK G +
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ----------AGLHPN- 336
            DA  +F  I EKN+V++NTMI+G  R    VE   LF+ M +           GL  N 
Sbjct: 190 NDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNG 249

Query: 337 --------------------EQTYISVLSACSHIGMVEKGKSYFDLMVK---QHNVL--- 370
                               + T+ SVL+AC     +++GK     +++   Q N+    
Sbjct: 250 LFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGS 309

Query: 371 ------------------------PNVFHYSCMIDILGRAGLIHEAYDLILNM------P 400
                                    NV  ++ M+   G+ G   EA  +  +M      P
Sbjct: 310 ALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHP 369

Query: 401 FDATASMWGSLLASCRNYRNLE 422
            D T    GS+++SC N  +LE
Sbjct: 370 DDFTL---GSVISSCANLASLE 388



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 8/138 (5%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           Q K++H  + +T      F  ++L++ Y K G + +A  VF  I + N+  WNT++S +S
Sbjct: 23  QVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYS 82

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQ--TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +     ++  +F+ M      PN    ++ S+LS  +  G++ +    +++M+K  +V  
Sbjct: 83  KLGYLQDMQRVFDSM------PNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNL 136

Query: 372 NVFHYSCMIDILGRAGLI 389
           N   +S M+ +    G +
Sbjct: 137 NRITFSTMLILSSNRGFV 154


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/577 (40%), Positives = 347/577 (60%), Gaps = 10/577 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S     L+SC   RA   G+  HA+++  G   D + +  L++ Y+ CG +S AR+VFDE
Sbjct: 69  SNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDE 128

Query: 94  MP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           MP Q  +  WN +I +Y  +G  + A+ L+  ML  G      FT   VL ACAA  D+ 
Sbjct: 129 MPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLS 188

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +++H   ++     +VFV T L+D+YAKCG + +A  VF     R+   W+SM+A   
Sbjct: 189 AGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACG 248

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN    EAL L R     G+     T+ S I A A  +AL +G+++H    + GFGS   
Sbjct: 249 QNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDK 308

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QA 331
             +SL+DMYAK G V+ A+ +F  +  + ++ WN MI GF  H  +     LF +M+ +A
Sbjct: 309 LKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEA 368

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            + P+  T++ VLSAC+H GMV++ K  FDLMV  +++ P V HY+C++D+LG +G   E
Sbjct: 369 QVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKE 428

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A D+I  M     + +WG+LL  C+ ++N+ELAE+A ++L  +EP++AGN++LLSNIYA 
Sbjct: 429 ASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAE 488

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
           + +WEE AR RKL+ +  +KK  + SW+E+KGK         +HPR  +IY +LE+L   
Sbjct: 489 SGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGL 548

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           + + GY P+T    H+VED  K+ ++  HSE+LA+ FGL+   P   + + KNLR+C DC
Sbjct: 549 ISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDC 608

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H  +K  S+I  RE I+RD+NR+HHF NG CSC D W
Sbjct: 609 HVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 117/211 (55%), Gaps = 2/211 (0%)

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
           +PY+    +++L +C   R V   +QLH   L +    +  + T L+D+YA CG +S A 
Sbjct: 64  SPYNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLAR 123

Query: 191 RVFESMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAG 248
           RVF+ MP +  V  W+ ++  + ++   E A+ L+R     G ++ + FT   V+ ACA 
Sbjct: 124 RVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAA 183

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L  L  G++VH  + +T + +++F  + L+DMYAKCGC+ +A+ VF+    ++  +WN+M
Sbjct: 184 LLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSM 243

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           I+   ++ R  E + L   M   G+ P   T
Sbjct: 244 IAACGQNGRPAEALTLCRNMAAEGIAPTIAT 274



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 10/192 (5%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           +A   A  ++TL + + + A   A  RG+  H      G  +       L++ Y+K G +
Sbjct: 264 AAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWV 323

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             A  +F+++  R ++SWN +I  +  +G    A  LF  M  E +      T   VL A
Sbjct: 324 MVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSA 383

Query: 145 CAAKRDVFECKQLH-----VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM-PE 198
           C     V E K++      V+++K  +       T L+DV    G   +AS V + M  +
Sbjct: 384 CNHGGMVQEAKEVFDLMVTVYSIKPTVQHY----TCLVDVLGHSGRFKEASDVIKGMLVK 439

Query: 199 RNEVTWSSMVAG 210
            +   W +++ G
Sbjct: 440 PDSGIWGALLNG 451


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/549 (40%), Positives = 340/549 (61%), Gaps = 31/549 (5%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y++ G +S AR++F+E P R + +W  ++ +Y  +G   EA  +F  M 
Sbjct: 218 DLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP 277

Query: 127 REGKTPYSEFTVSSVLCACAAK-------RDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           ++ +  Y+      V+ A  A+       R++FE               N+     ++  
Sbjct: 278 QKREMSYN------VMIAGYAQYKRMDMGRELFEEMPF----------PNIGSWNIMISG 321

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y + G ++ A  +F+ MP+R+ V+W++++AG+ QN LYEEA+ +    +  G   N+ T 
Sbjct: 322 YCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
              + ACA +AAL  GKQVH  + +TG+       ++LV MY KCGC+ +AY VF G++ 
Sbjct: 382 CCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH 441

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K++V WNTM++G++RH    + + +FE M  AG+ P+E T + VLSACSH G+ ++G  Y
Sbjct: 442 KDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEY 501

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F  M K + + PN  HY+CMID+LGRAG + EA +LI NMPF+  A+ WG+LL + R + 
Sbjct: 502 FHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHG 561

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N+EL E AA+ +F MEP N+G ++LLSN+YAA+ RW +V++ R  +R   V+K    SWV
Sbjct: 562 NMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWV 621

Query: 480 EIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E++ K +        HP    IY+ LE+L  +MK  GY   T+  LHDVE+  K+ +L +
Sbjct: 622 EVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKY 681

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+ FG++ +  G PIR+MKNLR+C DCH+ +K  S+I GR  IVRD +R+HHF+ 
Sbjct: 682 HSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSE 741

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 742 GICSCRDYW 750



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 166/348 (47%), Gaps = 19/348 (5%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +++ Y + G +  AR VFD MP +  +SWN ++ +Y  +GR +EA  LF    
Sbjct: 125 DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF---- 180

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            E K+ +   + + ++     +  + + +QL          R++     ++  YA+ G +
Sbjct: 181 -ESKSDWELISCNCLMGGYVKRNMLGDARQL----FDQIPVRDLISWNTMISGYAQDGDL 235

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           S A R+FE  P R+  TW++MV  +VQ+ + +EA  +F        +  + + + +I   
Sbjct: 236 SQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP----QKREMSYNVMIAGY 291

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A    +  G+++   +     GS     + ++  Y + G +  A  +F  + +++ V W 
Sbjct: 292 AQYKRMDMGRELFEEMPFPNIGS----WNIMISGYCQNGDLAQARNLFDMMPQRDSVSWA 347

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            +I+G++++    E M +  +M++ G   N  T+   LSAC+ I  +E GK     +V+ 
Sbjct: 348 AIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT 407

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
                     + ++ +  + G I EAYD+   +      S W ++LA 
Sbjct: 408 -GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVS-WNTMLAG 453



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    L +CA   A   GK  H +++  G     L  N L+  Y KCG I  A  VF  
Sbjct: 379 STFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQG 438

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  + IVSWNT++  Y  +G  ++A+ +F +M+  G  P  E T+  VL AC+       
Sbjct: 439 VQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKP-DEITMVGVLSACSHTGLTDR 497

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
             +  H       +  N      ++D+  + G + +A  +  +MP E +  TW +++ 
Sbjct: 498 GTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLG 555



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 53/223 (23%)

Query: 149 RDVFECKQLH--VFALKAAM--------DRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           R  F  +QLH  +F ++           D +    T  +  + + G    A  VF++MP 
Sbjct: 2   RGKFNLRQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPL 61

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           RN V++++M++G+++N  +  A  LF                               K  
Sbjct: 62  RNSVSYNAMISGYLRNAKFSLARDLF------------------------------DKMP 91

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H          ++F+ + ++  YA+   + DA  +F  + EK+VV WN M+SG+ R    
Sbjct: 92  H---------KDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHV 142

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
            E   +F++M     H N  ++  +L+A    G +E+ +  F+
Sbjct: 143 DEARDVFDRMP----HKNSISWNGLLAAYVRSGRLEEARRLFE 181



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 14/145 (9%)

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  +  +N V +N MISG+ R+A+      LF+KM     H +  ++  +L+  +    
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP----HKDLFSWNLMLTGYARNRR 110

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +   +  FD M ++     +V  ++ M+    R+G + EA D+   MP   + S W  LL
Sbjct: 111 LRDARMLFDSMPEK-----DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSIS-WNGLL 164

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPD 437
           A+      LE     A++LF  + D
Sbjct: 165 AAYVRSGRLE----EARRLFESKSD 185


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/574 (38%), Positives = 345/574 (60%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L + A  R    G   H  ++  G  +    S  L++ YSKCG +S AR +FD M
Sbjct: 133 TIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGM 192

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN++I  Y  +G  + A+ +F  ML EG  P +  TV   L ACA   D+   
Sbjct: 193 DHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQP-TNVTVMGALHACADLGDLERG 251

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H    +  +D +V V  +L+ +Y+KC  +  A+ +F+++  +  V+W++M+ G+ QN
Sbjct: 252 KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQN 311

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL  F   Q   ++ + FT+ SVI A A L+   Q K +H ++ +     N+F  
Sbjct: 312 GCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVM 371

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG +  A  +F  +  ++V+ WN MI G+  H      + LF++M++  + 
Sbjct: 372 TALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIK 431

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++  LSACSH G+VE+G  +F+ M K + + P + HY  M+D+LGRAG +++A+D
Sbjct: 432 PNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWD 491

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP     +++G++L +C+ ++N++L E AA ++F + PD+ G H+LL+NIYA    
Sbjct: 492 FIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASM 551

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKK 506
           W +VA+ R ++  S ++K    S VEI         G  +HP+  +IYS LE LV+E++ 
Sbjct: 552 WGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRA 611

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+T + +HDVED  K +LL  HSEKLA+ FGL+    G PI I KNLR+CGDCH+ 
Sbjct: 612 AGYVPDT-NSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNA 670

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S + GRE IVRD++RFH F +G CSC D+W
Sbjct: 671 TKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 194/356 (54%), Gaps = 2/356 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C       RGK  H  +I  G + +      ++N Y+KC  I+ A  +FD MP+R +
Sbjct: 37  LKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDL 96

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V WNT+I  Y  NG  + A+ L + M  EG  P S  T+ S+L A A  R +     +H 
Sbjct: 97  VCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDS-ITIVSILPAVADTRLLRIGMAVHG 155

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           + L+A  +  V V TAL+D+Y+KCG +S A  +F+ M  R  V+W+SM+ G+VQ+   E 
Sbjct: 156 YVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEG 215

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+++F++    G++    T+   + ACA L  L +GK VH ++ +    S++   +SL+ 
Sbjct: 216 AMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLIS 275

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KC  V  A  +F  +  K +V WN MI G++++    E +  F +MQ   + P+  T
Sbjct: 276 MYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFT 335

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            +SV+ A + + +  + K    L++++  +  NVF  + ++D+  + G IH A  L
Sbjct: 336 MVSVIPALAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARKL 390



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 162/308 (52%), Gaps = 3/308 (0%)

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
           ++  Y  +     A++ F  M  +   P   +  + +L  C    D+   K++H   + +
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVV-YNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
               N+F  T ++++YAKC  I+DA  +F+ MPER+ V W++M++G+ QN   + AL+L 
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
            R    G   +  TI S++ A A    L  G  VH  + + GF S +  +++LVDMY+KC
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           G V  A  +F G++ + VV WN+MI G+ +   +   M++F+KM   G+ P   T +  L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            AC+ +G +E+GK +   +V Q  +  +V   + +I +  +   +  A D+  N+  + T
Sbjct: 240 HACADLGDLERGK-FVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR-NKT 297

Query: 405 ASMWGSLL 412
              W +++
Sbjct: 298 LVSWNAMI 305


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 343/576 (59%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  C +        + H  +I  GL  D   SN LIN Y+K G +  ARK F +M
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +VSWN+II +Y  N     A   F+ M   G  P    T+ S+    A  RD    
Sbjct: 378 FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP-DLLTLVSLASIVAQSRDCKNS 436

Query: 155 KQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           + +H F ++   +  +V +G A++D+YAK GL+  A +VFE +P ++ ++W++++ G+ Q
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQ 496

Query: 214 NELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N L  EA+ +++  +    +  NQ T  S++ A A + AL QG ++H  + KT    ++F
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVF 556

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A+ L+D+Y KCG +VDA  +F  + +++ V WN +IS    H  + + + LF +M   G
Sbjct: 557 VATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEG 616

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T++S+LSACSH G VE+GK  F LM +++ + P++ HY CM+D+LGRAG +  A
Sbjct: 617 VKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMA 675

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           YD I +MP    AS+WG+LL +CR + N+EL + A+ +LF ++  N G ++LLSNIYA  
Sbjct: 676 YDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANV 735

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            +WE V + R L R+  +KK    S +E+         G ++HP+  EIY +L  L  +M
Sbjct: 736 GKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKM 795

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K LGY P+    L DVE+  K+ +L  HSE+LA+ FG++   P  PIRI KNLR+CGDCH
Sbjct: 796 KSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCH 855

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  KF SRI  RE +VRD NRFHHF +G CSC D+W
Sbjct: 856 NATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 208/384 (54%), Gaps = 8/384 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T    L++C      V G+  H     +G   +   +  LI+ YS+ G    AR +F
Sbjct: 217 DFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R + SWN +I     NG   +A+ +   M  EG    +  TV S+L  C    D+
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG-IKMNFVTVVSILPVCPQLGDI 332

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                +H++ +K  ++ ++FV  AL+++YAK G + DA + F+ M   + V+W+S++A +
Sbjct: 333 STAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAY 392

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSN 270
            QN+    A   F + Q+ G + +  T+ S+    A        + VH  + + G+   +
Sbjct: 393 EQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED 452

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   +++VDMYAK G +  A+ VF  I  K+V+ WNT+I+G++++  + E + +++ M++
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 331 AG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
              + PN+ T++S+L A +H+G +++G      ++K  N+  +VF  +C+ID+ G+ G +
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRL 571

Query: 390 HEAYDLILNMPFDATASMWGSLLA 413
            +A  L   +P +++ + W ++++
Sbjct: 572 VDAMSLFYQVPQESSVT-WNAIIS 594



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 186/362 (51%), Gaps = 4/362 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  HA ++  G       S  L+N Y+  G +S +R  FD++PQ+ + +WN++I +Y  N
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G   EA+  F  +L   +     +T   VL AC     + + +++H +A K     NVFV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVDGRKIHCWAFKLGFQWNVFV 252

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
             +L+ +Y++ G    A  +F+ MP R+  +W++M++G +QN    +AL +    ++ G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           + N  T+ S++  C  L  +     +H  + K G   ++F +++L++MYAK G + DA  
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
            F  +   +VV WN++I+ + ++   V     F KMQ  G  P+  T +S+ S  +    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            +  +S    ++++  ++ +V   + ++D+  + GL+  A+ +   +P     S W +L+
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVIS-WNTLI 491

Query: 413 AS 414
             
Sbjct: 492 TG 493


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/546 (40%), Positives = 333/546 (60%), Gaps = 17/546 (3%)

Query: 67   DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
            +   +N L++FYSKC  +   R++FDEMP+R  VS+N II +Y  N      + LF  M 
Sbjct: 468  NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 527

Query: 127  REG----KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
            + G      PY+     ++L    +  DV   KQ+H   +   +     +G AL+D+Y+K
Sbjct: 528  KLGFDRQVLPYA-----TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 582

Query: 183  CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
            CG++  A   F +  E++ ++W++++ G+VQN  +EEAL LF   +  GL  ++ T SS+
Sbjct: 583  CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 642

Query: 243  ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
            I A + LA +  G+Q+H+ L ++G+ S++F+ S LVDMYAKCGC+ +A   F  + E+N 
Sbjct: 643  IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 702

Query: 303  VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
            + WN +IS ++ +  +   + +FE M   G +P+  T++SVL+ACSH G+ ++   YF L
Sbjct: 703  ISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL 762

Query: 363  MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
            M  Q+++ P   HY+C+ID LGR G   +   +++ MPF A   +W S+L SCR + N E
Sbjct: 763  MKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQE 822

Query: 423  LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
            LA +AA +LFGMEP +A  +++LSNIYA   +WE+ A  +K++RD  V+KE   SWVEIK
Sbjct: 823  LARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIK 882

Query: 483  GK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
             K           P I EI  +L++L +EM K GYKP+    LH V+   K E L +HSE
Sbjct: 883  QKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSE 942

Query: 535  KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
            +LA+ F LM    G PIRIMKNL  C DCH+ +K  S+I  R+ IVRD  RFHHF +G C
Sbjct: 943  RLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVC 1002

Query: 595  SCWDFW 600
            SC D+W
Sbjct: 1003 SCGDYW 1008



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 187/384 (48%), Gaps = 32/384 (8%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H   I  GL+      N L++ Y K GL++ AR+VF EM  +  V++N ++   +  G  
Sbjct: 372 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 431

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR-----NV 170
            +A+ LF  M R G                      +    LH+     +  R     NV
Sbjct: 432 TQALQLFAAMRRAG----------------------YSRHPLHLLQYSHSRSRSTSVLNV 469

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FV  +LLD Y+KC  + D  R+F+ MPER+ V+++ ++A +  N+     L LFR  Q L
Sbjct: 470 FVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKL 529

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G +      ++++     L  +  GKQ+HA L   G  S     ++L+DMY+KCG +  A
Sbjct: 530 GFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 589

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
              FS   EK+ + W  +I+G+ ++ +  E + LF  M++AGL P+  T+ S++ A S +
Sbjct: 590 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 649

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
            M+  G+     +++      +VF  S ++D+  + G + EA      MP   + S W +
Sbjct: 650 AMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNA 707

Query: 411 LLASCRNYRNLELAEIAAKQLFGM 434
           ++++  +Y     A+ A K   GM
Sbjct: 708 VISAYAHYGE---AKNAIKMFEGM 728



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 157/312 (50%), Gaps = 8/312 (2%)

Query: 38  ATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           AT+ S A     V  GK  HA+++ +GL ++ L  N LI+ YSKCG++  A+  F    +
Sbjct: 539 ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSE 598

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           +  +SW  +I  Y  NG+ +EA+ LF +M R G  P    T SS++ A ++   +   +Q
Sbjct: 599 KSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRP-DRATFSSIIKASSSLAMIGLGRQ 657

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           LH + +++    +VF G+ L+D+YAKCG + +A R F+ MPERN ++W+++++ +     
Sbjct: 658 LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGE 717

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACA--GLAALIQGKQVHAVLCKTGFGSNMFAA 274
            + A+ +F      G   +  T  SV+ AC+  GLA     K  H +  +          
Sbjct: 718 AKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECM-KYFHLMKHQYSISPWKEHY 776

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           + ++D   + GC      +   +  K + ++W +++     H       +  +K+   G+
Sbjct: 777 ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKL--FGM 834

Query: 334 HPNEQTYISVLS 345
            P + T   +LS
Sbjct: 835 EPTDATPYVILS 846



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 52/406 (12%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N++++ YS  G +  A+ +F   P R   +W  ++ ++   GR  +A++LF  ML EG  
Sbjct: 292 NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 351

Query: 132 PYSEFTVSSVL--CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
           P    TV++VL    C           LH FA+K  +D +VFV   LLD Y K GL++ A
Sbjct: 352 P-DRVTVTTVLNLPGCTVP-------SLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 403

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            RVF  M +++ VT+++M+ G  +  L+ +AL LF   +  G  Y++  +          
Sbjct: 404 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG--YSRHPLH--------- 452

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             L+Q     +   ++    N+F  +SL+D Y+KC C+ D   +F  + E++ V +N +I
Sbjct: 453 --LLQYSHSRS---RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVII 507

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV----K 365
           + ++ +  +  V+ LF +MQ+ G       Y ++LS    +  V  GK     +V     
Sbjct: 508 AAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 567

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLELA 424
             ++L N      +ID+  + G++  A     N   + +A  W +L+    +N ++ E  
Sbjct: 568 SEDLLGNA-----LIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALITGYVQNGQHEE-- 619

Query: 425 EIAAKQLF------GMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
              A QLF      G+ PD A      S+I  A+     +   R+L
Sbjct: 620 ---ALQLFSDMRRAGLRPDRA----TFSSIIKASSSLAMIGLGRQL 658



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 19/188 (10%)

Query: 158 HVFALKAAMD----RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           H+   +A  D    +N+F    +L  Y+  G +  A  +F S P RN  TW+ M+     
Sbjct: 272 HLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAA 331

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVI----CACAGLAALIQGKQVHAVLCKTGFGS 269
                +AL LFR     G+  ++ T+++V+    C    L         H    K G  +
Sbjct: 332 AGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSL---------HPFAIKFGLDT 382

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++F  ++L+D Y K G +  A  VF  + +K+ V +N M+ G S+     + + LF  M+
Sbjct: 383 HVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 442

Query: 330 QAGL--HP 335
           +AG   HP
Sbjct: 443 RAGYSRHP 450


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/580 (40%), Positives = 336/580 (57%), Gaps = 16/580 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNND--TLTSNILINFYSKCGLISGARKVF 91
           ++L + ++S    +    G+  HA+II   L+N   +   N L+N YSK    + A+ + 
Sbjct: 7   NSLASLVESAVSTQCSRLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNSAQLLL 65

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
              P R +V+W  +I     NGR   A+  F NM R+   P ++FT      A  + R  
Sbjct: 66  SLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQP-NDFTFPCAFKASGSLRSP 124

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              KQ+H  A+KA    +VFVG +  D+Y+K GL  +A ++F+ MPERN  TW++ ++  
Sbjct: 125 LVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNS 184

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V    Y++AL  F  A+  G+E   F +SSV+ ACAGL+ L  GK VH +  K     N+
Sbjct: 185 VLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNI 244

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F  S+LVDMY KCG + DA   F  + E+N+V WN MI G++   ++   + LF++M   
Sbjct: 245 FVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM-TC 303

Query: 332 GLH---PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           G H   PN  T++ VLSACS  G V  G   F+ M  ++ + P   HY+C++D+LGRAG+
Sbjct: 304 GSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGM 363

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + +AY  I  MP   T S+WG+LL + + +   EL ++AA  LF ++P ++GNH+LLSN+
Sbjct: 364 VEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNM 423

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKL 500
           +AA  RWEE    RK ++D  +KK    SW+              +H R +EI + L KL
Sbjct: 424 FAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKL 483

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
             EM+  GY P+T   L D+E+  K   + +HSEK+AL FGL+ +  GVPIRI KNLRIC
Sbjct: 484 RGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRIC 543

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCHS +KF S I GRE IVRD N FH F +  CSC D+W
Sbjct: 544 GDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/607 (38%), Positives = 350/607 (57%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +++ +  +A   G   H   I +    D    N L+ FY  CG +S A ++F  +
Sbjct: 128 TFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGI 187

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWN++I ++      ++A+ LF+ M RE   P S  T+  VL ACA K D+   
Sbjct: 188 SCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNS-VTMVGVLSACAKKLDLEFG 246

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV-- 212
           + +  +  +  +  ++ +  A+LD+Y KCG + DA ++F+ MPER+  +W+ M+ G+   
Sbjct: 247 RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKM 306

Query: 213 -----------------------------QNELYEEALILFRRAQVLGL-EYNQFTISSV 242
                                        QN   +EAL +F   Q+  + + ++ T+ S 
Sbjct: 307 GDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVST 366

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + ACA L A+  G  +H  + + G   N    SSLVDMYAKCG +  A  VF  +EE++V
Sbjct: 367 LSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDV 426

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
            +W+ MI+G   H R    + LF +MQ+A + PN  T+ +VL ACSH G+V++G+ +F  
Sbjct: 427 YVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHE 486

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M   + V+P + HY+CM+DILGRAG + EA +LI  M    +AS+WG+LL +C  + N+E
Sbjct: 487 MEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVE 546

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-- 480
           L E+A+ QL  +EP N G  +LLSNIYA   RWE+V+  RKL+RD+E+KKE   S +E  
Sbjct: 547 LGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEAN 606

Query: 481 ------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV-EDSRKQELLIHHS 533
                 + G   HP  + IYSKLE++  ++K +GY+P   H L  + ED  K++ L  HS
Sbjct: 607 GNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHS 666

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+ L P  PIR++KNLRICGDCH+F K  SR+  R+ ++RD  RFHHF +G 
Sbjct: 667 EKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGH 726

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 727 CSCMDYW 733



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 207/410 (50%), Gaps = 39/410 (9%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI--NFYSKCGLISGARKVFDEMP 95
           +T+  C+  +   + K  HA+++  GL  D  +++ L   +  S    +  AR +FD++P
Sbjct: 30  STIDKCSSSK---QLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIP 86

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           Q  + +WNT+I +Y ++    ++  +F+++L + +   ++FT   V+ A +  +      
Sbjct: 87  QPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGT 146

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
            +H  A+K +   ++++  +L+  Y  CG +S A R+F+ +  ++ V+W+SM++ F Q  
Sbjct: 147 AVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGN 206

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
             E+AL LF + +   +  N  T+  V+ ACA    L  G+ V + + + G   ++   +
Sbjct: 207 CPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCN 266

Query: 276 SLVDMYAKCGCVVDAY-------------------------------FVFSGIEEKNVVL 304
           +++DMY KCG V DA                                 VF+ +  K +  
Sbjct: 267 AMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAA 326

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           WN +IS + ++ +  E + +F ++Q + +  P+E T +S LSAC+ +G ++ G  +  + 
Sbjct: 327 WNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHVY 385

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +K+  ++ N    S ++D+  + G + +A ++  ++  +    +W +++A
Sbjct: 386 IKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIA 434



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 19/272 (6%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFES 195
           + S +  C++ +   + K++H   L+  +  + F  + L    A      +  A  +F+ 
Sbjct: 28  ILSTIDKCSSSK---QLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQ 84

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILF----RRAQVLGLEYNQFTISSVICACAGLAA 251
           +P+ N  TW++++  +  +    ++ ++F     + + L    N+FT   VI A + L A
Sbjct: 85  IPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLP---NKFTFPFVIKAASELKA 141

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
              G  VH +  K  FG +++  +SLV  Y  CG +  A  +F GI  K+VV WN+MIS 
Sbjct: 142 SRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISA 201

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHN 368
           F++     + + LF KM++  + PN  T + VLSAC+    +E G+   SY    +++  
Sbjct: 202 FAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSY----IERKG 257

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           +  ++   + M+D+  + G + +A  L   MP
Sbjct: 258 IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP 289


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 342/573 (59%), Gaps = 9/573 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L+  ++ CA  +A   G+  H  +    L+     SN+L++ Y KCG +  A++VFD M 
Sbjct: 44  LEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQ 103

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            + + SW  ++  +  +GR  EA+ LF  M +EG+ P     +   + +C A + + + +
Sbjct: 104 HKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELP-DRVALLKFIDSCGAAKALSQGR 162

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           ++H  A    MD ++    A++++Y KCG I +A  VF  MPE+N ++WS+M+A F QNE
Sbjct: 163 EIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNE 222

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           L +EAL+ F+  Q  G+E ++ T  SV+ A   + AL  GK +H  +   G  +++   +
Sbjct: 223 LADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGN 282

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV+MY KCG   DA  VF  + EKNVV WN M++ + ++ RS E + LF+ M   G+ P
Sbjct: 283 TLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRP 342

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N+ T++++L  CSH G  +   S+F  M +   + P   H+ C+ID+LGR+G + EA +L
Sbjct: 343 NDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEEL 402

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           I  MP  A A +W SLL +C  +++ + A  AA++ F  EP  A  +++LSN+YAA ++W
Sbjct: 403 IQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKW 462

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKL 507
           +E A+ RK +  + V+K+  +SW+EI         G   HP  + I+  L++L+ EM+  
Sbjct: 463 DEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIK 522

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY+P+ +  +H +E+  K E+L +HSEKLA+ FG+    P  P+ I+KNLR+C DCHS +
Sbjct: 523 GYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAI 582

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KF S + GR   VRD NRFHHF  G CSC D+W
Sbjct: 583 KFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 182/324 (56%), Gaps = 4/324 (1%)

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           +A+   +++L +         +  ++  CA  + + E +++H +     +DR  F+   L
Sbjct: 23  DAIREAVDLLEQSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLL 82

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +D+Y KCG + +A RVF++M  +N  +W+ ++AGFVQ+    EA+ LF R    G   ++
Sbjct: 83  VDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDR 142

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
             +   I +C    AL QG+++H+     G  S++  A+++++MY KCG + +A+ VF+ 
Sbjct: 143 VALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTR 202

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           + EKNV+ W+TMI+ F ++  + E ++ F+ MQQ G+  +  TY+SVL A + +G +E G
Sbjct: 203 MPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELG 262

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-C 415
           K+   + +    +  ++   + ++++ G+ G   +A D+  +M  +     W ++LA+  
Sbjct: 263 KA-LHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSM-VEKNVVSWNAMLAAYG 320

Query: 416 RNYRNLE-LAEIAAKQLFGMEPDN 438
           +N R+ E LA   +  L G+ P++
Sbjct: 321 QNGRSREALALFDSMDLEGVRPND 344


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/576 (39%), Positives = 354/576 (61%), Gaps = 12/576 (2%)

Query: 34  STLQATLQSCARERAPVRG-KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           ST  A + +C   R+ +RG K     ++  G   D    N ++  + KCGL+  ARK+FD
Sbjct: 118 STYDALVSACVGLRS-IRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFD 176

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EMP++ + SW T+IG +  +G   EA  LF+ M  E     S  T ++++ A A    V 
Sbjct: 177 EMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSR-TFTTMIRASAGLGLVQ 235

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +Q+H  ALK  +  + FV  AL+D+Y+KCG I DA  VF+ MPE+  V W+S++A + 
Sbjct: 236 VGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYA 295

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            +   EEAL  +   +  G + + FTIS VI  CA LA+L   KQ HA L + G+ +++ 
Sbjct: 296 LHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIV 355

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           A ++LVD Y+K G + DA+ VF+ +  KNV+ WN +I+G+  H +  E + +FE+M + G
Sbjct: 356 ANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREG 415

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T+++VLSACS+ G+ E+G   F  M + H V P   HY+CM+++LGR GL+ EA
Sbjct: 416 MIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEA 475

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y+LI + PF  T +MW +LL +CR + NLEL ++AA+ L+GMEP+   N+++L N+Y ++
Sbjct: 476 YELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSS 535

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            + +E A   + ++   ++   + +W+E+K        G ++H +  EIY K+  ++ E+
Sbjct: 536 GKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEI 595

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
            + GY  E +  L DV D  +Q +L +HSEKLA+ FGL+      P++I +  R+CGDCH
Sbjct: 596 SRHGYVEENKALLPDV-DEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCH 654

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S +KF + + GRE +VRD +RFHHF +GSCSC D+W
Sbjct: 655 SAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 106/203 (52%), Gaps = 10/203 (4%)

Query: 217 YEEALILFRRAQVLGLEYNQF-----TISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           Y EA+ LF   ++L LE++ F     T  +++ AC GL ++   K+V   +  +GF  ++
Sbjct: 96  YREAMELF---EILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDL 152

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           +  + ++ ++ KCG ++DA  +F  + EK++  W TMI GF       E   LF  M + 
Sbjct: 153 YVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEE 212

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
                 +T+ +++ A + +G+V+ G+      +K+  V  + F    +ID+  + G I +
Sbjct: 213 FNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKR-GVGDDTFVSCALIDMYSKCGSIED 271

Query: 392 AYDLILNMPFDATASMWGSLLAS 414
           A+ +   MP + T   W S++AS
Sbjct: 272 AHCVFDQMP-EKTTVGWNSIIAS 293


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 339/574 (59%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L + A  +A   G+  H      G       +  +++ Y KCG +  AR VF  M
Sbjct: 245 TLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGM 304

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWNT+I  Y  NG  +EA A F+ ML EG  P +  ++   L ACA   D+   
Sbjct: 305 SSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEP-TNVSMMGALHACANLGDLERG 363

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H    +  +  +V V  +L+ +Y+KC  +  A+ VF ++  +  VTW++M+ G+ QN
Sbjct: 364 RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQN 423

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL LF   Q   ++ + FT+ SVI A A L+   Q K +H +  +T    N+F  
Sbjct: 424 GCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVC 483

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+D +AKCG +  A  +F  ++E++V+ WN MI G+  +    E + LF +MQ   + 
Sbjct: 484 TALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVK 543

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PNE T++SV++ACSH G+VE+G  YF+ M + + + P + HY  M+D+LGRAG + +A+ 
Sbjct: 544 PNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWK 603

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +MP     ++ G++L +CR ++N+EL E  A +LF ++PD+ G H+LL+N+YA+   
Sbjct: 604 FIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASM 663

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++VAR R  +    ++K    S VE++        G  NHP+   IY+ LE L +EMK 
Sbjct: 664 WDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKA 723

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+T + +HDVE+  K++LL  HSE+LA+ FGL+    G  I I KNLR+CGDCH  
Sbjct: 724 AGYVPDT-NSIHDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEA 782

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S + GRE IVRDL RFHHF NG CSC D+W
Sbjct: 783 TKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 186/345 (53%), Gaps = 2/345 (0%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           RG+  H  +I  G  ++      ++N Y+KC  I  A K+F+ MPQR +VSWNT++  Y 
Sbjct: 160 RGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYA 219

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NG  + AV + + M   G+ P S  T+ SVL A A  + +   + +H +A +A  +  V
Sbjct: 220 QNGFARRAVQVVLQMQEAGQKPDS-ITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMV 278

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V TA+LD Y KCG +  A  VF+ M  RN V+W++M+ G+ QN   EEA   F +    
Sbjct: 279 NVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDE 338

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+E    ++   + ACA L  L +G+ VH +L +   G ++   +SL+ MY+KC  V  A
Sbjct: 339 GVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  ++ K VV WN MI G++++    E + LF +MQ   + P+  T +SV++A + +
Sbjct: 399 ASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADL 458

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            +  + K    L ++   +  NVF  + +ID   + G I  A  L
Sbjct: 459 SVTRQAKWIHGLAIRTL-MDKNVFVCTALIDTHAKCGAIQTARKL 502



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 1/299 (0%)

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           II  G  N+ L    LI+ + K   I+ A +VF+ +  +  V ++T++  Y  N   ++A
Sbjct: 67  IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA 126

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           V  +  M  +   P   +  + +L       D+   +++H   +      N+F  TA+++
Sbjct: 127 VRFYERMRCDEVMPVV-YDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVN 185

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +YAKC  I DA ++FE MP+R+ V+W+++VAG+ QN     A+ +  + Q  G + +  T
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSIT 245

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + SV+ A A L AL  G+ +H    + GF   +  A++++D Y KCG V  A  VF G+ 
Sbjct: 246 LVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS 305

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            +NVV WNTMI G++++  S E    F KM   G+ P   + +  L AC+++G +E+G+
Sbjct: 306 SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGR 364



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 89/195 (45%), Gaps = 7/195 (3%)

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C  L  L    Q+  ++ K GF +     + L+ ++ K   + +A  VF  +E K  VL+
Sbjct: 54  CTSLKEL---HQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLY 110

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +TM+ G+++++   + +  +E+M+   + P    +  +L        + +G+     MV 
Sbjct: 111 HTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHG-MVI 169

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLEL 423
            +    N+F  + ++++  +   I +AY +   MP     S W +++A  +   +    +
Sbjct: 170 TNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVS-WNTVVAGYAQNGFARRAV 228

Query: 424 AEIAAKQLFGMEPDN 438
             +   Q  G +PD+
Sbjct: 229 QVVLQMQEAGQKPDS 243


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/639 (36%), Positives = 357/639 (55%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           TL   L S A  R    GK  H+ I+ +GL  +   SN L+N Y+KCG    A+ VFD  
Sbjct: 148 TLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM 207

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        +M +R IV+WN++I  +   G +  A+ +F 
Sbjct: 208 VVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            MLR+       FT++SVL ACA    +   KQ+H   +    D +  V  AL+ +Y++C
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 184 GLISDASR---------------------------------VFESMPERNEVTWSSMVAG 210
           G +  A R                                 +F S+ +R+ V W++M+ G
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q+  Y EA+ LFR     G   N +T+++++   + LA+L  GKQ+H    K+G   +
Sbjct: 388 YEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS 447

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +  +++L+ MYAK G +  A   F  I  E++ V W +MI   ++H  + E + LFE M 
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             GL P+  TY+ V SAC+H G+V +G+ YFD+M     ++P + HY+CM+D+ GRAGL+
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP +     WGSLL++CR ++N++L ++AA++L  +EP+N+G +  L+N+Y
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLY 627

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLV 501
           +A  +WEE A+ RK ++D  VKKE+  SW+E+K K          HP   EIY  ++K+ 
Sbjct: 628 SACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIW 687

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           +E+KK+GY P+T   LHD+E+  K+++L HHSEKLA+ FGL+       +RIMKNLR+C 
Sbjct: 688 DEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCN 747

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +KF S++ GRE IVRD  RFHHF +G CSC D+W
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 228/512 (44%), Gaps = 110/512 (21%)

Query: 41  QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV 100
           +S  +       ++ H ++I  GL       N L+N YSK G    ARK+FDEMP R   
Sbjct: 22  KSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81

Query: 101 SWNTIIGSYTTNG-------------------------------REQEAVALFINMLREG 129
           SWNT++ +Y+  G                               +  +A+ +  +M++EG
Sbjct: 82  SWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG 141

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG----- 184
             P ++FT+++VL + AA R +   K++H F +K  +  NV V  +LL++YAKCG     
Sbjct: 142 IEP-TQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 185 -------LISDASR-------------------VFESMPERNEVTWSSMVAGFVQNELYE 218
                  ++ D S                     FE M ER+ VTW+SM++GF Q     
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDL 260

Query: 219 EALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            AL +F +  +   L  ++FT++SV+ ACA L  L  GKQ+H+ +  TGF  +    ++L
Sbjct: 261 RALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNAL 320

Query: 278 VDMYAKCGCV-----------------------VDAYF----------VFSGIEEKNVVL 304
           + MY++CG V                       +D Y           +F  +++++VV 
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVA 380

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W  MI G+ +H    E + LF  M   G  PN  T  ++LS  S +  +  GK      V
Sbjct: 381 WTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAV 440

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLI---HEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           K   +  +V   + +I +  +AG I     A+DLI     +     W S++ +   + + 
Sbjct: 441 KSGEIY-SVSVSNALITMYAKAGNITSASRAFDLI---RCERDTVSWTSMIIALAQHGHA 496

Query: 422 ELA-EIAAKQLF-GMEPDNAGNHLLLSNIYAA 451
           E A E+    L  G+ PD    H+    +++A
Sbjct: 497 EEALELFETMLMEGLRPD----HITYVGVFSA 524


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/574 (40%), Positives = 345/574 (60%), Gaps = 10/574 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
             + +++CA   +   GK  H   +  G+ ++    + L + YSKCG +  A KVF+EMP
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            +  VSW  +I  Y+  G  +EA+  F  M+ E  T   +  + S L AC A +     +
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT-IDQHVLCSTLGACGALKACKFGR 227

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFVQN 214
            +H   +K   + ++FVG AL D+Y+K G +  AS VF    E RN V+++ ++ G+V+ 
Sbjct: 228 SVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVET 287

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  E+ L +F   +  G+E N+FT SS+I ACA  AAL QG Q+HA + K  F  + F +
Sbjct: 288 EQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS 347

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S LVDMY KCG +  A   F  I +   + WN+++S F +H    + +  FE+M   G+ 
Sbjct: 348 SILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVK 407

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+IS+L+ CSH G+VE+G  YF  M K + V+P   HYSC+ID+LGRAG + EA +
Sbjct: 408 PNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKE 467

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MPF+  A  W S L +CR + + E+ ++AA++L  +EP N+G  +LLSNIYA  R+
Sbjct: 468 FINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQ 527

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKK 506
           WE+V   R  +RD  VKK    SWV++  K         +H R + IY KL+ L++++K 
Sbjct: 528 WEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKA 587

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P T+    D++D  K++LL  HSE++A+ F L+ +  G PI + KNLR+C DCHS 
Sbjct: 588 AGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSA 647

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KF S++ GR+ IVRD +RFHHFT+GSCSC D+W
Sbjct: 648 IKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 221/387 (57%), Gaps = 12/387 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + + L   +Q+ A+ +   RGK  HA +I  G    T  +N L+N YSKCG +  A K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D MPQR +VSW  +I   + N +  EA+  F  M   G+ P ++F  SS + ACA+   +
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVP-TQFAFSSAIRACASLGSI 122

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              KQ+H  ALK  +   +FVG+ L D+Y+KCG + DA +VFE MP ++EV+W++M+ G+
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGY 182

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            +   +EEAL+ F++     +  +Q  + S + AC  L A   G+ VH+ + K GF S++
Sbjct: 183 SKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDI 242

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           F  ++L DMY+K G +  A  VF GI+   +NVV +  +I G+    +  + + +F +++
Sbjct: 243 FVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           + G+ PNE T+ S++ AC++   +E+G +     V + N   + F  S ++D+ G+ GL+
Sbjct: 302 RQGIEPNEFTFSSLIKACANQAALEQG-TQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 390 H---EAYDLILNMPFDATASMWGSLLA 413
               +A+D I     D T   W SL++
Sbjct: 361 EHAIQAFDEI----GDPTEIAWNSLVS 383



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + +++CA + A  +G   HA+++ +  + D   S+IL++ Y KCGL+  A + FDE+
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEI 370

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                ++WN+++  +  +G  ++A+  F  M+  G  P +  T  S+L  C+    V E 
Sbjct: 371 GDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKP-NAITFISLLTGCSHAGLVEE- 428

Query: 155 KQLHVFALKAAMDRN--VFVG----TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
             L  F    +MD+   V  G    + ++D+  + G + +A      MP E N   W S 
Sbjct: 429 -GLDYF---YSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 484

Query: 208 VA 209
           + 
Sbjct: 485 LG 486


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 347/573 (60%), Gaps = 12/573 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
            +++L SC   R   + +  HA+I   G   +   +N L+  Y + G +  A+++FD M 
Sbjct: 56  FRSSLLSC---RNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMS 112

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R   SW+ I+G Y   G       +F  +LR G  P  +++   V+ AC   +D+   +
Sbjct: 113 KRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSG-APLDDYSAPVVIRACRDLKDLKCGR 171

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
            +H   LK  +D   FV   L+D+YA+C ++ DA ++F  M +R+  TW+ M+    ++ 
Sbjct: 172 LIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESG 231

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           +  E+L+ F R +  G+  ++  + +V+ ACA L A+ + K +HA +  TG+  ++   +
Sbjct: 232 VPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGT 291

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +++DMYAKCG V  A ++F  ++ +NV+ W+ MI+ +  H +  + + LF  M ++G+ P
Sbjct: 292 AMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILP 351

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N  T++S+L ACSH G++E+G+ +F  M  ++ V P+V HY+CM+D+LGRAG + EA ++
Sbjct: 352 NRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEM 411

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           I  MP +    +WG+LL +CR +R+L+LAE  A+ L  ++    G+++LLSNIYA   +W
Sbjct: 412 IEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKW 471

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKL 507
           E++A+ R L+    ++K   ++W+E+         G + HPR  EIY  L++L E+++  
Sbjct: 472 EDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVA 531

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY P+T   L+DV++  KQ LL  HSEKLA+ FGL+ L  G PIRI KNLR+CGDCH+F 
Sbjct: 532 GYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFC 591

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KF S I  +  IVRD  RFHHF  G CSC D+W
Sbjct: 592 KFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 349/578 (60%), Gaps = 10/578 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T+ +    CA  R    G+  H   +    + +    N L++ YSKCG +  A+ VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVF 354

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EM  R +VS+ ++I  Y   G   EAV LF  M  EG +P   +TV++VL  CA  R +
Sbjct: 355 REMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP-DVYTVTAVLNCCARNRLL 413

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            E K++H +  +  M  ++FV  AL+D+YAKCG + +A  VF  M  ++ ++W++++ G+
Sbjct: 414 DEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGY 473

Query: 212 VQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            +N    EAL LF    V      ++ T++ V+ ACA L+A  +G+++H  + + G+ S+
Sbjct: 474 SKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 533

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
              A+SLVDMYAKCG ++ A  +F  I  K++V W  MI+G+  H    E + LF +M+Q
Sbjct: 534 RHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ P+E +++S+L ACSH G+V++G  +F++M  +  + P V HY+C++D+L R G + 
Sbjct: 594 AGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLS 653

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +AY  I NMP    A++WG+LL  CR + +++LAE  A+++F +EP+N G ++L++NIYA
Sbjct: 654 KAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYA 713

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
              +WEEV R RK I    ++K    SW+EIKG+ N        +P   +I + L  +  
Sbjct: 714 EAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRA 773

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            M + GY P T++ L D E+  K+E L  HSEKLA+  G++    G  IR+ KNLR+CGD
Sbjct: 774 RMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGD 833

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH   KF S++  RE ++RD NRFH F +G CSC  FW
Sbjct: 834 CHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 189/358 (52%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + LQ CA  ++   GK     I G G   D+   + L   Y+ CG +  A +VFD++
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                + WN ++     +G    ++ LF  M+  G      +T S V  + ++ R V   
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLRSVNGG 214

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH + LK+       VG +L+  Y K   +  A +VF+ M ER+ ++W+S++ G+V N
Sbjct: 215 EQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L E+ L +F +    G+E +  TI SV   CA    +  G+ VH    K  F       
Sbjct: 275 GLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFC 334

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMY+KCG +  A  VF  +  ++VV + +MI+G++R   + E + LFE+M++ G+ 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           P+  T  +VL+ C+   ++++GK   +  +K++++  ++F  + ++D+  + G + EA
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEGKRVHE-WIKENDMGFDIFVSNALMDMYAKCGSMREA 451


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 352/582 (60%), Gaps = 18/582 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T+ +    CA  R    G+  H+  +    + +    N L++ YSKCG +  A+ VF
Sbjct: 144 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 203

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EM  R +VS+ ++I  Y   G   EAV LF  M  EG +P   +TV++VL  CA  R +
Sbjct: 204 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP-DVYTVTAVLNCCARYRLL 262

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            E K++H +  +  +  ++FV  AL+D+YAKCG + +A  VF  M  ++ ++W++++ G+
Sbjct: 263 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 322

Query: 212 VQNELYEEALILFRRAQVLGLEYNQF-----TISSVICACAGLAALIQGKQVHAVLCKTG 266
            +N    EAL LF     L LE  +F     T++ V+ ACA L+A  +G+++H  + + G
Sbjct: 323 SKNCYANEALSLFN----LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNG 378

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           + S+   A+SLVDMYAKCG ++ A+ +F  I  K++V W  MI+G+  H    E + LF 
Sbjct: 379 YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFN 438

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M+QAG+  +E +++S+L ACSH G+V++G  +F++M  +  + P V HY+C++D+L R 
Sbjct: 439 QMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLART 498

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G + +AY  I NMP    A++WG+LL  CR + +++LAE  A+++F +EP+N G ++L++
Sbjct: 499 GDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMA 558

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLE 498
           NIYA   +WE+V R RK I    ++K    SW+EIKG+ N        +P    I + L 
Sbjct: 559 NIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLR 618

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           K+   M + GY P T++ L D E+  K+E L  HSEKLA+  G++    G  IR+ KNLR
Sbjct: 619 KVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLR 678

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +CGDCH   KF S++  RE ++RD NRFH F +G CSC  FW
Sbjct: 679 VCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 203/373 (54%), Gaps = 8/373 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     +S +  R+   G+  H  I+  G        N L+ FY K   +  ARKVFDEM
Sbjct: 46  TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 105

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R ++SWN+II  Y +NG  ++ +++F+ ML  G       T+ SV   CA  R +   
Sbjct: 106 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG-IEIDLATIVSVFAGCADSRLISLG 164

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H   +KA   R       LLD+Y+KCG +  A  VF  M +R+ V+++SM+AG+ + 
Sbjct: 165 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 224

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  EA+ LF   +  G+  + +T+++V+  CA    L +GK+VH  + +   G ++F +
Sbjct: 225 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 284

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE-KMQQAGL 333
           ++L+DMYAKCG + +A  VFS +  K+++ WNT+I G+S++  + E + LF   +++   
Sbjct: 285 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 344

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+E+T   VL AC+ +   +KG+     +++ +    +    + ++D+  + G +    
Sbjct: 345 SPDERTVACVLPACASLSAFDKGREIHGYIMR-NGYFSDRHVANSLVDMYAKCGAL---- 399

Query: 394 DLILNMPFDATAS 406
            L+ +M FD  AS
Sbjct: 400 -LLAHMLFDDIAS 411



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 167/302 (55%), Gaps = 2/302 (0%)

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FDE+     + WN ++     +G    ++ LF  M+  G      +T S V  + ++ R 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLRS 59

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           V   +QLH F LK+       VG +L+  Y K   +  A +VF+ M ER+ ++W+S++ G
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V N L E+ L +F +  V G+E +  TI SV   CA    +  G+ VH++  K  F   
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+DMY+KCG +  A  VF  + +++VV + +MI+G++R   + E + LFE+M++
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ P+  T  +VL+ C+   ++++GK   +  +K++++  ++F  + ++D+  + G + 
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHE-WIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 391 EA 392
           EA
Sbjct: 299 EA 300


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 347/588 (59%), Gaps = 40/588 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV----------- 100
           G+  H +I+ +G      T + L++ Y+K G I  AR+VFDEM  + +V           
Sbjct: 164 GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLR 223

Query: 101 --------------------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                               +W T++   T NG E EA+ +F  M  EG     ++T  S
Sbjct: 224 CKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEG-VGIDQYTFGS 282

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC A   + E KQ+H +  +   + NVFVG+AL+D+Y+KC  +  A  VF  M  +N
Sbjct: 283 ILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKN 342

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W++M+ G+ QN   EEA+ +F   Q  G++ + FT+ SVI +CA LA+L +G Q H 
Sbjct: 343 IISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHC 402

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +   +G    +  +++LV +Y KCG + DA+ +F  +   + V W  ++ G+++  ++ E
Sbjct: 403 LALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKE 462

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM   G+ P+  T+I VLSACS  G+V+KG+SYF  M + H+++P   HY+CMI
Sbjct: 463 TIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMI 522

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+  R+G + +A + I  MP    A  W +LL++CR   ++E+ + AA+ L  ++P N  
Sbjct: 523 DLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPA 582

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
           +++LL +++A+   W +VA+ R+ +RD +VKKE   SW++ K K        ++HP    
Sbjct: 583 SYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRT 642

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY KL+ L  +M + GYKP+    LHDV D+ K  +L HHSEKLA+ FGL+ + P +PIR
Sbjct: 643 IYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIR 702

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I+KNLR+C DCH+  KF S+I GR+ +VRD  RFH F+NG CSC DFW
Sbjct: 703 IVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 219/423 (51%), Gaps = 39/423 (9%)

Query: 52  GKVCHAKIIGMGLNNDTL-TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G + HA+ +   +    L T N L++  ++ GL+    ++F  +PQR  VS+N ++  ++
Sbjct: 60  GLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFS 119

Query: 111 TNGREQEAVALFINMLRE--GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
             G    A   ++ +LR+  G  P S  T+S V+   +A  D    +Q+H   L+     
Sbjct: 120 RAGAHARAAGAYVALLRDEAGVRP-SRITMSGVVMVASALGDRALGRQVHCQILRLGFGA 178

Query: 169 NVFVGTALLDVYAKCGLISDASRV-------------------------------FESMP 197
             F G+ L+D+YAK G I DA RV                               FE++ 
Sbjct: 179 YAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIE 238

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           ER+ +TW++MV G  QN L  EAL +FRR +  G+  +Q+T  S++ AC  LAAL +GKQ
Sbjct: 239 ERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQ 298

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           +HA + +T +  N+F  S+LVDMY+KC  V  A  VF  +  KN++ W  MI G+ ++  
Sbjct: 299 IHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGC 358

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             E + +F +MQ+ G+ P++ T  SV+S+C+++  +E+G + F  +     + P V   +
Sbjct: 359 GEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLRPYVTVSN 417

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAKQLF-GME 435
            ++ + G+ G I +A+ L   M F    S W +L+     + +  E  ++  K L  G++
Sbjct: 418 ALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVMGYAQFGKAKETIDLFEKMLSKGVK 476

Query: 436 PDN 438
           PD 
Sbjct: 477 PDG 479



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 149/323 (46%), Gaps = 34/323 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C    A   GK  HA I      ++    + L++ YSKC  +  A  VF  M
Sbjct: 279 TFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRM 338

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + I+SW  +I  Y  NG  +EAV +F  M R+G  P  +FT+ SV+ +CA    + E 
Sbjct: 339 MWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKP-DDFTLGSVISSCANLASLEEG 397

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q H  AL + +   V V  AL+ +Y KCG I DA R+F+ M   ++V+W+++V G+ Q 
Sbjct: 398 AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQF 457

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E + LF +    G++ +  T   V+ AC+    + +G+          +  +M   
Sbjct: 458 GKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRS---------YFHSMQQD 508

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             +V +     C++D Y                  SG+ + A         E ++Q    
Sbjct: 509 HDIVPLDDHYTCMIDLY----------------SRSGWLKQAE--------EFIKQMPRC 544

Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
           P+   + ++LSAC   G +E GK
Sbjct: 545 PDAFGWATLLSACRLRGDMEIGK 567


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 350/575 (60%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G+  H++++  GL +D    N L+  Y+K G +  AR VFD M
Sbjct: 163 TYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRM 222

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R + SWNT+I  Y  N     A  +F  M + G       T+  +L ACA  + V E 
Sbjct: 223 AERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCT-TLLGLLSACADLKAVKEG 281

Query: 155 KQLHVFALKAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           K +H +A++ ++ + N F   +L+++Y  C  + DA R+FE +  ++ V+W+SM+ G+ +
Sbjct: 282 KVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYAR 341

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    E+L LFRR  + G   +Q T  +V+ AC  +AAL  G  +H+ L K GF +N   
Sbjct: 342 NGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIV 401

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LVDMY+KCG +  +  VF  + +K++V W+ M++G+  H R  E + + + M+   +
Sbjct: 402 GTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSV 461

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+   + S+LSACSH G+V +GK  F  M K++NV P + HYSCM+D+LGRAG + EAY
Sbjct: 462 IPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAY 521

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            +I  M    T+ +W +LL + R ++N++LAEI+A+++F M P    +++ LSNIYAA +
Sbjct: 522 VIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEK 581

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RW++V R R ++R   +KK    S++E+         G ++H +  +IY+KL +L +++K
Sbjct: 582 RWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLK 641

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GYKP+T    +DVE+  K+++L  HSE+LA+ F L+   PG  IRI KNLR+CGDCH+
Sbjct: 642 EAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHT 701

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K  S + GRE I+RD++RFHHF  G CSC D+W
Sbjct: 702 VTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 205/385 (53%), Gaps = 7/385 (1%)

Query: 33  LSTLQ--ATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARK 89
           L++LQ  A LQS    ++  +G+  HA +I    L N+T  +  L  FY+ CGL+S A  
Sbjct: 57  LTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEV 116

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FD +  +    WN +I  Y +NG   +++ L+  ML  G+     FT   VL AC    
Sbjct: 117 IFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRA-DNFTYPFVLKACGDLL 175

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            V   +++H   +   ++ +++VG +LL +YAK G +  A  VF+ M ER+  +W++M++
Sbjct: 176 LVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMIS 235

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+ +N     A ++F      GL  +  T+  ++ ACA L A+ +GK +H    +   G+
Sbjct: 236 GYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGN 295

Query: 270 -NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            N F  +SL++MY  C C+VDA  +F  +  K+ V WN+MI G++R+  + E + LF +M
Sbjct: 296 YNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRM 355

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
              G  P++ T+I+VL AC  I  +  G S    +VK+     N    + ++D+  + G 
Sbjct: 356 ALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKK-GFDANTIVGTALVDMYSKCGS 414

Query: 389 IHEAYDLILNMPFDATASMWGSLLA 413
           +  +  +   MP D +   W +++A
Sbjct: 415 LACSRRVFDEMP-DKSLVSWSAMVA 438



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 179/361 (49%), Gaps = 16/361 (4%)

Query: 94  MPQRCIVSW--NTIIG-------SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
           +  RC+++W  + I+G       S+T++  + +   +    L   + P  ++ ++S+ C 
Sbjct: 4   VSNRCLIAWTPHAILGGRDREYNSFTSHFSQGDVAQMVERSLSMREHPLQQYPLTSLQCG 63

Query: 145 CAAK-----RDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
              +     +   + +QLH   +  + ++ N ++ T L   YA CGL+S A  +F+ +  
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +N   W+ M+ G+  N L  ++L+L+R     G   + FT   V+ AC  L  +  G++V
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H+ +   G  S+++  +SL+ MYAK G +  A  VF  + E+++  WNTMISG++++A S
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
               ++F+ M +AGL  +  T + +LSAC+ +  V++GK      V+      N F  + 
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ-LFGMEPD 437
           +I++      + +A  L   + +  T S    +L   RN    E   +  +  L G  PD
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPD 363

Query: 438 N 438
            
Sbjct: 364 Q 364



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 4/287 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKV 90
           + +TL   L +CA  +A   GKV H   +   + N +   +N LI  Y  C  +  AR++
Sbjct: 261 DCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRL 320

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F+ +  +  VSWN++I  Y  NG   E++ LF  M  +G  P  + T  +VL AC     
Sbjct: 321 FERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGP-DQVTFIAVLGACDQIAA 379

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +     +H + +K   D N  VGTAL+D+Y+KCG ++ + RVF+ MP+++ V+WS+MVAG
Sbjct: 380 LRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAG 439

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGS 269
           +  +    EA+ +    +   +  +    +S++ AC+    +++GK++   + K      
Sbjct: 440 YGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKP 499

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV-LWNTMISGFSRH 315
            +   S +VD+  + G + +AY +   +E K    +W  +++    H
Sbjct: 500 ALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 343/579 (59%), Gaps = 31/579 (5%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            +L+T+ + L  CA       GK  H+  I          SN L++ YSKCG + GA +V
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F++M +R +VSW ++I  YT +GR   A+ L   M +EG        ++S+L ACA    
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG-VKLDVVAITSILHACARSGS 367

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K +H +     M+ N+FV  AL+D+YAKCG +  A+ VF +M  ++ ++W++M+  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE 427

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
                                L+ +  T++ V+ ACA L+AL +GK++H  + + G+ S+
Sbjct: 428 ---------------------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSD 466

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
              A++LVD+Y KCG +  A  +F  I  K++V W  MI+G+  H    E +  F +M+ 
Sbjct: 467 RHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 526

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ P+E ++IS+L ACSH G++E+G  +F +M    N+ P + HY+CM+D+L R G + 
Sbjct: 527 AGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLS 586

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +AY+ +  +P    A++WG+LL  CRNY ++ELAE  A+++F +EP+N G ++LL+NIYA
Sbjct: 587 KAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYA 646

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN---------HPRIAEIYSKLEKLV 501
              +WEEV R R+ I    ++K    SW+EIKGK N         HP    I S L+K+ 
Sbjct: 647 EAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMR 706

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            +MK+ G+ P+T++ L + ++ +K+  L  HSEKLA+ FGL+ L P   IR+ KNLR+CG
Sbjct: 707 RKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCG 766

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH   KF S+   RE ++RD NRFHHF +G CSC  FW
Sbjct: 767 DCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 213/473 (45%), Gaps = 82/473 (17%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E  T  + LQ CA  ++   GK  H+ I    +  D      L++FY+ CG +   R+VF
Sbjct: 98  ETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVF 157

Query: 92  DEMPQ---------------------------------------------------RCIV 100
           D M +                                                   R ++
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SWN++I  Y +NG  +  + ++  M+  G       T+ SVL  CA    +   K +H  
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           A+K++ +R +     LLD+Y+KCG +  A RVFE M ERN V+W+SM+AG+ ++   + A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           + L ++ +  G++ +   I+S++ ACA   +L  GK VH  +      SN+F  ++L+DM
Sbjct: 337 IKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           YAKCG +  A  VFS +  K+++ WNTMI                       L P+ +T 
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTM 435

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEAYDLILNM 399
             VL AC+ +  +E+GK     +++  N   +  H +  ++D+  + G++  A  L   +
Sbjct: 436 ACVLPACASLSALERGKEIHGYILR--NGYSSDRHVANALVDLYVKCGVLGLARLLFDMI 493

Query: 400 PFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           P     S W  ++A      Y N  +A     +  G+EPD       +S +YA
Sbjct: 494 PSKDLVS-WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS---FISILYA 542



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 173/369 (46%), Gaps = 54/369 (14%)

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T  SVL  CA  +   + K++H      ++  +  +G  L+  YA CG + +  RVF++M
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 197 ----------------------------------------PE-----------RNEVTWS 205
                                                   PE           R+ ++W+
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           SM++G+V N L E  L ++++   LG++ +  TI SV+  CA    L  GK VH++  K+
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
            F   +  +++L+DMY+KCG +  A  VF  + E+NVV W +MI+G++R  RS   + L 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           ++M++ G+  +     S+L AC+  G ++ GK   D  +K +N+  N+F  + ++D+  +
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKANNMESNLFVCNALMDMYAK 399

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCR-NYRNLELAEIAAKQLFGMEPDNAGNHLL 444
            G +  A  +   M      S W +++   + + R +     A   L  +E     +  +
Sbjct: 400 CGSMEAANSVFSTMVVKDIIS-WNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYI 458

Query: 445 LSNIYAANR 453
           L N Y+++R
Sbjct: 459 LRNGYSSDR 467



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           +++ +  F Q    E A+ L    Q   LE    T  SV+  CAGL +   GK+VH+++ 
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
               G +      LV  YA CG + +   VF  +E+KNV LWN M+S +++     E + 
Sbjct: 127 SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 324 LFEKMQQAGL 333
           LF+ M + G+
Sbjct: 187 LFKIMVEKGI 196


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/598 (39%), Positives = 358/598 (59%), Gaps = 22/598 (3%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           AI       N T+  T +  + SCA++ +   G   H +++  G + D   +  LIN Y 
Sbjct: 66  AIHLLCCEPNPTQ-RTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYY 124

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
           + G I  ARKVFDE  +R I  WN +  +    G  +E + L++ M   G  P   FT +
Sbjct: 125 ELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG-IPSDRFTYT 183

Query: 140 SVLCACAAKR----DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
            VL AC         + + K++H   L+   + N+ V T LLDVYAK G +S A+ VF +
Sbjct: 184 FVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCA 243

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY-----NQFTISSVICACAGLA 250
           MP +N V+WS+M+A F +NE+  +AL LF   Q++ LE      N  T+ +V+ ACAGLA
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMKALELF---QLMMLEAHDSVPNSVTMVNVLQACAGLA 300

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           AL QGK +H  + + G  S +   ++L+ MY +CG ++    VF  ++ ++VV WN++IS
Sbjct: 301 ALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLIS 360

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
            +  H    + + +FE M   G  P+  ++I+VL ACSH G+VE+GK  F+ M+ ++ + 
Sbjct: 361 IYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIH 420

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P + HY+CM+D+LGRA  + EA  LI +M F+   ++WGSLL SCR + N+ELAE A+  
Sbjct: 421 PGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTL 480

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK------ 484
           LF +EP NAGN++LL++IYA  + W E     KL+    ++K    SW+E+K K      
Sbjct: 481 LFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVS 540

Query: 485 --RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
              ++P+I EI++ L KL  EMK  GY P+T   L+D+++  K+ +++ HSEKLA+ FGL
Sbjct: 541 VDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGL 600

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +    G  IRI KNLR+C DCH+  KF S+ A RE +VRD+NRFHHF +G CSC D+W
Sbjct: 601 INTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/581 (41%), Positives = 358/581 (61%), Gaps = 18/581 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL A + +C  +   + G++ H+  +  G ++    +N L+ +Y K G +  A++VF  M
Sbjct: 142 TLSAVITACCDDVGLI-GQL-HSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM 199

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              R  VSWN++I +Y  +    +A+ LF  M+R G      FT++SVL A     D+  
Sbjct: 200 GGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLN-VDMFTLASVLTAFTCLEDLSG 258

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGL-ISDASRVFESMPERNEVTWSSMVAGFV 212
             Q H   +K    +N  VG+ L+D+Y+KCG  +SD  +VFE + E + V W++MV+G+ 
Sbjct: 259 GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318

Query: 213 QNELY-EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           QNE + E+AL  FR+ Q +G   N  +   VI AC+ L++  QGKQ+H++  K+   SN 
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 272 FAA-SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            +  ++L+ MY+KCG + DA  +F  + E N V  N+MI+G+++H   +E + LF+ M +
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
             + P   T+ISVLSAC+H G VE+G +YF++M ++ N+ P   HYSCMID+LGRAG + 
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLS 498

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA +LI  MPF+  +  W SLL +CR + N+ELA  AA Q+  +EP NA  +++LSN+YA
Sbjct: 499 EAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYA 558

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVE 502
           +  RWEEVA  RK +RD  VKK+   SW+E+K +         +HP I EIY  LE++  
Sbjct: 559 SAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSG 618

Query: 503 EMKKLGYKPETEHDLHDVEDSR---KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           +MK+ GY P+    L   + +R   K+  L HHSEKLA+ FGL+    G P+ ++KNLRI
Sbjct: 619 KMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRI 678

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CGDCH+ +KF S IAGRE  VRD +RFH F  G CSC D+W
Sbjct: 679 CGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 202/409 (49%), Gaps = 37/409 (9%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK--- 89
           L   +  L++C  ER    GK  H+  I   +   T  SN  I  YSKCG ++ ARK   
Sbjct: 8   LQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ 67

Query: 90  ----------------------------VFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                                       +FD++P+  +VS+NT+I +Y   G    A+ L
Sbjct: 68  DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M RE       FT+S+V+ AC    DV    QLH  A+ +  D  V V  ALL  Y 
Sbjct: 128 FSGM-REMGLDMDXFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 182 KCGLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           K G + DA RVF  M   R+EV+W+SM+  + Q++   +AL LF+     GL  + FT++
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLA 244

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC-GCVVDAYFVFSGIEE 299
           SV+ A   L  L  G Q H  L KTGF  N    S L+D+Y+KC G + D   VF  I E
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITE 304

Query: 300 KNVVLWNTMISGFSRHARSVE-VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            ++VLWNTM+SG+S++   +E  +  F +MQ  G  PN+ +++ V+SACS++    +GK 
Sbjct: 305 PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ 364

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
              L +K       +   + +I +  + G + +A  L   M    T S+
Sbjct: 365 IHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSL 413


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/581 (41%), Positives = 358/581 (61%), Gaps = 18/581 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL A + +C  +   + G++ H+  +  G ++    +N L+ +Y K G +  A++VF  M
Sbjct: 142 TLSAVITACCDDVGLI-GQL-HSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM 199

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              R  VSWN++I +Y  +    +A+ LF  M+R G      FT++SVL A     D+  
Sbjct: 200 GGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLN-VDMFTLASVLTAFTCLEDLSG 258

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGL-ISDASRVFESMPERNEVTWSSMVAGFV 212
             Q H   +K    +N  VG+ L+D+Y+KCG  +SD  +VFE + E + V W++MV+G+ 
Sbjct: 259 GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYS 318

Query: 213 QNELY-EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           QNE + E+AL  FR+ Q +G   N  +   VI AC+ L++  QGKQ+H++  K+   SN 
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 272 FAA-SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            +  ++L+ MY+KCG + DA  +F  + E N V  N+MI+G+++H   +E + LF+ M +
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
             + P   T+ISVLSAC+H G VE+G +YF++M ++ N+ P   HYSCMID+LGRAG + 
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLS 498

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA +LI  MPF+  +  W SLL +CR + N+ELA  AA Q+  +EP NA  +++LSN+YA
Sbjct: 499 EAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYA 558

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVE 502
           +  RWEEVA  RK +RD  VKK+   SW+E+K +         +HP I EIY  LE++  
Sbjct: 559 SAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSG 618

Query: 503 EMKKLGYKPETEHDLHDVEDSR---KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           +MK+ GY P+    L   + +R   K+  L HHSEKLA+ FGL+    G P+ ++KNLRI
Sbjct: 619 KMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRI 678

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CGDCH+ +KF S IAGRE  VRD +RFH F  G CSC D+W
Sbjct: 679 CGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/409 (33%), Positives = 202/409 (49%), Gaps = 37/409 (9%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK--- 89
           L   +  L++C  ER    GK  H+  I   +   T  SN  I  YSKCG ++ ARK   
Sbjct: 8   LQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ 67

Query: 90  ----------------------------VFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                                       +FD++P+  +VS+NT+I +Y   G    A+ L
Sbjct: 68  DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M RE       FT+S+V+ AC    DV    QLH  A+ +  D  V V  ALL  Y 
Sbjct: 128 FSGM-REMGLDMDGFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 182 KCGLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           K G + DA RVF  M   R+EV+W+SM+  + Q++   +AL LF+     GL  + FT++
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLA 244

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC-GCVVDAYFVFSGIEE 299
           SV+ A   L  L  G Q H  L KTGF  N    S L+D+Y+KC G + D   VF  I E
Sbjct: 245 SVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITE 304

Query: 300 KNVVLWNTMISGFSRHARSVE-VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            ++VLWNTM+SG+S++   +E  +  F +MQ  G  PN+ +++ V+SACS++    +GK 
Sbjct: 305 PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ 364

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
              L +K       +   + +I +  + G + +A  L   M    T S+
Sbjct: 365 IHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSL 413


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 341/578 (58%), Gaps = 31/578 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T+ + L  CA       GK  H+  I          SN L++ YSKCG + GA +VF
Sbjct: 250 DLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           ++M +R +VSW ++I  YT +GR   A+ L   M +EG         +S+L ACA    +
Sbjct: 310 EKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG-VKLDVVATTSILHACARSGSL 368

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K +H +     M+ N+FV  AL+D+Y KCG +  A+ VF +M  ++ ++W++M+   
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE- 427

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
                               L+ +  T++ ++ ACA L+AL +GK++H  + + G+ S+ 
Sbjct: 428 --------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             A++LVD+Y KCG +  A  +F  I  K++V W  MISG+  H    E +  F +M+ A
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDA 527

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P+E ++IS+L ACSH G++E+G  +F +M    N+ P + HY+CM+D+L R G + +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY+ I  +P    A++WG+LL  CR Y ++ELAE  A+++F +EP+N G ++LL+NIYA 
Sbjct: 588 AYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN---------HPRIAEIYSKLEKLVE 502
             +WEEV R R+ I    ++K    SW+EIKGK N         HP   +I S L+K+  
Sbjct: 648 AEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRR 707

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           +MK+ GY P+T++ L + ++ +K+  L  HSEKLA+ FGL+ L P   +R+ KNLR+CGD
Sbjct: 708 KMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGD 767

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH   KF S+   RE ++RD NRFHHF NG CSC  FW
Sbjct: 768 CHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 210/473 (44%), Gaps = 82/473 (17%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E  T  + LQ CA  ++   GK  H+ I    +  D +    L++ Y+ CG +   R+VF
Sbjct: 98  ETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVF 157

Query: 92  DEMPQ---------------------------------------------------RCIV 100
           D M +                                                   R ++
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVI 217

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SWN++I  Y +NG  +  + ++  M+  G       T+ SVL  CA    +   K +H  
Sbjct: 218 SWNSMISGYVSNGLTERGLEIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           A+K+  +R +     LLD+Y+KCG +  A RVFE M ERN V+W+SM+AG+ ++   + A
Sbjct: 277 AIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           + L ++ +  G++ +    +S++ ACA   +L  GK VH  +      SN+F  ++L+DM
Sbjct: 337 IRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y KCG +  A  VFS +  K+++ WNTMI                       L P+ +T 
Sbjct: 397 YTKCGSMDGANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTM 435

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEAYDLILNM 399
             +L AC+ +  +E+GK     +++  N   +  H +  ++D+  + G++  A  L   +
Sbjct: 436 ACILPACASLSALERGKEIHGYILR--NGYSSDRHVANALVDLYVKCGVLGLARLLFDMI 493

Query: 400 PFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           P     S W  +++      Y N  +A     +  G+EPD       +S +YA
Sbjct: 494 PSKDLVS-WTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVS---FISILYA 542



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 175/369 (47%), Gaps = 54/369 (14%)

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T SSVL  CA  + + + K++H       +  +  +G  L+ +YA CG + +  RVF++M
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 197 ----------------------------------------PE-----------RNEVTWS 205
                                                   PE           R+ ++W+
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           SM++G+V N L E  L ++++   LG++ +  TI SV+  CA    L  GK VH++  K+
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
            F   +  +++L+DMY+KCG +  A  VF  + E+NVV W +MI+G++R  RS   + L 
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           ++M++ G+  +     S+L AC+  G ++ GK   D  +K +N+  N+F  + ++D+  +
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY-IKANNMESNLFVCNALMDMYTK 399

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCR-NYRNLELAEIAAKQLFGMEPDNAGNHLL 444
            G +  A  +   M      S W +++   + + R +     A   L  +E     +  +
Sbjct: 400 CGSMDGANSVFSTMVVKDIIS-WNTMIGELKPDSRTMACILPACASLSALERGKEIHGYI 458

Query: 445 LSNIYAANR 453
           L N Y+++R
Sbjct: 459 LRNGYSSDR 467



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 25/231 (10%)

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           +R    +++ +  F Q    E A+ L    Q   LE    T SSV+  CAG  +L  GK+
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETK--TYSSVLQLCAGSKSLTDGKK 120

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH+++       +      LV +YA CG + +   VF  +E+KNV LWN M+S +++   
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             E + LF+ M + G+                    E     FD +  +     +V  ++
Sbjct: 181 FKESICLFKIMVEKGIEGKRP---------------ESASELFDKLCDR-----DVISWN 220

Query: 378 CMIDILGRAGLIH---EAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            MI      GL     E Y  ++ +  D   +   S+L  C N   L L +
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 352/582 (60%), Gaps = 18/582 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T+ +    CA  R    G+  H+  +    + +    N L++ YSKCG +  A+ VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 354

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EM  R +VS+ ++I  Y   G   EAV LF  M  EG +P   +TV++VL  CA  R +
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP-DVYTVTAVLNCCARYRLL 413

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            E K++H +  +  +  ++FV  AL+D+YAKCG + +A  VF  M  ++ ++W++++ G+
Sbjct: 414 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 473

Query: 212 VQNELYEEALILFRRAQVLGLEYNQF-----TISSVICACAGLAALIQGKQVHAVLCKTG 266
            +N    EAL LF     L LE  +F     T++ V+ ACA L+A  +G+++H  + + G
Sbjct: 474 SKNCYANEALSLFN----LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNG 529

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           + S+   A+SLVDMYAKCG ++ A+ +F  I  K++V W  MI+G+  H    E + LF 
Sbjct: 530 YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFN 589

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M+QAG+  +E +++S+L ACSH G+V++G  +F++M  +  + P V HY+C++D+L R 
Sbjct: 590 QMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLART 649

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G + +AY  I NMP    A++WG+LL  CR + +++LAE  A+++F +EP+N G ++L++
Sbjct: 650 GDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMA 709

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLE 498
           NIYA   +WE+V R RK I    ++K    SW+EIKG+ N        +P    I + L 
Sbjct: 710 NIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLR 769

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           K+   M + GY P T++ L D E+  K+E L  HSEKLA+  G++    G  IR+ KNLR
Sbjct: 770 KVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLR 829

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +CGDCH   KF S++  RE ++RD NRFH F +G CSC  FW
Sbjct: 830 VCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 193/358 (53%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + LQ CA  ++   GK     I G G   D+   + L   Y+ CG +  A +VFDE+
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                + WN ++     +G    ++ LF  M+  G      +T S V  + ++ R V   
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLRSVHGG 214

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH F LK+       VG +L+  Y K   +  A +VF+ M ER+ ++W+S++ G+V N
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L E+ L +F +  V G+E +  TI SV   CA    +  G+ VH++  K  F       
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 334

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMY+KCG +  A  VF  + +++VV + +MI+G++R   + E + LFE+M++ G+ 
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           P+  T  +VL+ C+   ++++GK   +  +K++++  ++F  + ++D+  + G + EA
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHE-WIKENDLGFDIFVSNALMDMYAKCGSMQEA 451


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/644 (36%), Positives = 357/644 (55%), Gaps = 79/644 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L    + CA   A   GK  H      GL+ D      + + Y +CG +  ARKVFD M
Sbjct: 118 VLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRM 177

Query: 95  PQR----------------C-------------------IVSWNTIIGSYTTNGREQEAV 119
             +                C                   IVSWN I+  +  +G  +EAV
Sbjct: 178 SDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAV 237

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            +F  +   G  P  + TVSSVL +      +   + +H + +K  + ++  V +A++D+
Sbjct: 238 VMFQKIHHLGFCP-DQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDM 296

Query: 180 YAKCG-------------------------------LISDASRVFESMPER----NEVTW 204
           Y K G                               L+  A  +FE   E+    N V+W
Sbjct: 297 YGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSW 356

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +S++AG  QN    EAL LFR  QV G++ N  TI S++ AC  +AAL  G+  H    +
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                N+   S+L+DMYAKCG +  +  VF+ +  KN+V WN++++GFS H ++ EVM +
Sbjct: 417 VHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSI 476

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           FE + +  L P+  ++ S+LSAC  +G+ ++G  YF +M +++ + P + HYSCM+++LG
Sbjct: 477 FESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLG 536

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG + EAYDLI  MPF+  + +WG+LL SCR   N++LAEIAA++LF +EP+N G ++L
Sbjct: 537 RAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVL 596

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
           LSNIYAA   W EV   R  +    +KK    SW+++K        G ++HP+I +I  K
Sbjct: 597 LSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEK 656

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           ++++ +EM+K G++P  +  LHDVE+  ++++L  HSEKLA+ FGL+    G P++++KN
Sbjct: 657 MDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKN 716

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LRICGDCH+ +KF S  AGRE  +RD NRFHHF +G CSC DFW
Sbjct: 717 LRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 189/427 (44%), Gaps = 73/427 (17%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+I+  G  ND   S  LI  YS     + A  V   +P   I S++++I + T     
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +++ +F  M   G  P S   + ++   CA        KQ+H  +  + +D + FV  +
Sbjct: 98  TQSIGVFSRMFSHGLIPDSH-VLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVT-------------------------------- 203
           +  +Y +CG + DA +VF+ M +++ VT                                
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 204 ---WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
              W+ +++GF ++  ++EA+++F++   LG   +Q T+SSV+ +      L  G+ +H 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---------------------- 298
            + K G   +    S+++DMY K G V     +F+  E                      
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336

Query: 299 -------------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
                        E NVV W ++I+G +++ + +E + LF +MQ AG+ PN  T  S+L 
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           AC +I  +  G+S     V+ H +L NV   S +ID+  + G I+ +  ++ NM      
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLS-QIVFNMMPTKNL 454

Query: 406 SMWGSLL 412
             W SL+
Sbjct: 455 VCWNSLM 461



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 159/368 (43%), Gaps = 78/368 (21%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q H   LK+    + ++   L+  Y+     +DA  V +S+P+    ++SS++    + +
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           L+ +++ +F R    GL  +   + ++   CA L+A   GKQ+H V C +G   + F   
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 276 SLVDMYAKCGCVVDAYFVF------------------------------------SGIEE 299
           S+  MY +CG + DA  VF                                    SGI E
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI-E 214

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
            N+V WN ++SGF+R     E +++F+K+   G  P++ T  SVL +     M+  G+  
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIH----------------------------- 390
              ++KQ  +L +    S MID+ G++G ++                             
Sbjct: 275 HGYVIKQ-GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 391 -----EAYDLILNMPFDATASMWGSLLASC-RNYRNLELAEIAAK-QLFGMEPDNAGNHL 443
                E ++L      +     W S++A C +N +++E  E+  + Q+ G++P    NH+
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP----NHV 389

Query: 444 LLSNIYAA 451
            + ++  A
Sbjct: 390 TIPSMLPA 397


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/578 (39%), Positives = 342/578 (59%), Gaps = 15/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  CA+    V G + H  +I  GL +D   SN LIN YSK G +  A++VFD M
Sbjct: 250 TVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGM 309

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN+II +Y  N     A+  F  ML  G  P    TV S+        D    
Sbjct: 310 EVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRP-DLLTVVSLASIFGQLSDRRIG 368

Query: 155 KQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           + +H F ++   ++ ++ +G AL+++YAK G I  A  VFE +P R+ ++W++++ G+ Q
Sbjct: 369 RAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQ 428

Query: 214 NELYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N L  EA+  +   +    +  NQ T  S++ A + + AL QG ++H  L K     ++F
Sbjct: 429 NGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVF 488

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A+ L+DMY KCG + DA  +F  I ++  V WN +IS    H    + + LF+ M+  G
Sbjct: 489 VATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADG 548

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  +  T++S+LSACSH G+V++ +  FD M K++ + PN+ HY CM+D+ GRAG + +A
Sbjct: 549 VKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKA 608

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y+L+ NMP  A AS+WG+LLA+CR + N EL   A+ +L  ++ +N G ++LLSNIYA  
Sbjct: 609 YNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANV 668

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK----------GKRNHPRIAEIYSKLEKLVE 502
            +WE   + R L RD  ++  K+  W  +           G ++HP+ AEIY +L  L  
Sbjct: 669 GKWEGAVKVRSLARDRGLR--KTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNA 726

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           +MK LGY P+    L DVE+  K+E+L  HSE+LA+ FG++   P  PIRI KNLR+CGD
Sbjct: 727 KMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGD 786

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+  K+ S+I  RE IVRD NRFHHF +G CSC D+W
Sbjct: 787 CHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 205/418 (49%), Gaps = 13/418 (3%)

Query: 2   KSLLRYKHKFYYKSFSSSAIASASANANATELST------LQATLQSCARERAPVRGKVC 55
           K +L+ +    Y  FSSS     S + +                 +SC         K  
Sbjct: 14  KPILQLQQPCIYHFFSSSLQHKISHDPDNKNNKNNNVVVDFNLVFRSCTNINV---AKQL 70

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA ++ +G   D +    L+  Y+  G +S +   F  + ++ I SWN+++ +Y   GR 
Sbjct: 71  HALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRY 130

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           ++++     +L         +T   VL AC +  D    +++H + LK   + +V+V  +
Sbjct: 131 RDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAAS 187

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +Y++ G +  A +VF  MP R+  +W++M++GF QN    EAL +  R +   ++ +
Sbjct: 188 LIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMD 247

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+SS++  CA    ++ G  VH  + K G  S++F +++L++MY+K G + DA  VF 
Sbjct: 248 TVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFD 307

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           G+E +++V WN++I+ + ++   V  +  F++M   G+ P+  T +S+ S    +     
Sbjct: 308 GMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRI 367

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           G++    +V+   +  ++   + ++++  + G I  A  +   +P     S W +L+ 
Sbjct: 368 GRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVIS-WNTLIT 424



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
            KQ+HA+L   G   ++   + LV +YA  G +  +   F  I+ KN+  WN+M+S + R
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 315 HARSVEVM-ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
             R  + M  + E +  +G+ P+  T+  VL AC  +   EK   +   M  +H+V    
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDV---- 182

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRN 417
           +  + +I +  R G +  A+ + ++MP     S W ++++  C+N
Sbjct: 183 YVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGS-WNAMISGFCQN 226


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/638 (37%), Positives = 346/638 (54%), Gaps = 73/638 (11%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L   L SCA   A   G+  H+ +I +GL++    +N ++  Y KCG    AR VF+ M 
Sbjct: 166 LTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMK 225

Query: 96  -------------------------------QRCIVSWNTIIGSYTTNGREQEAVALFIN 124
                                          +R IVSWN II  Y  NG +  A+  F  
Sbjct: 226 VRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSR 285

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM------------------ 166
           ML        EFTV+SVL ACA  R +   KQ+H + L+  M                  
Sbjct: 286 MLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSG 345

Query: 167 ---------------DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                          D NV   TALL+ Y K G    A  VF+ M  R+ + W++M+ G+
Sbjct: 346 SVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGY 405

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            QN   +EA+ LFR     G E N  T+++V+ ACA LA L  GKQ+H    ++    ++
Sbjct: 406 EQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSV 465

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
             +++++ +YA+ G V  A  VF  I   K  V W +MI   ++H    + ++LFE+M +
Sbjct: 466 SVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLR 525

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ P+  TYI V SAC+H G ++KGK Y++ M+ +H ++P + HY+CM+D+L RAGL+ 
Sbjct: 526 VGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLT 585

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA++ I  MP      +WGSLLA+CR  +N +LAE+AA++L  ++PDN+G +  L+N+Y+
Sbjct: 586 EAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYS 645

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
           A  RW + AR  KL +D  VKKE   SW  ++ K +        HP+   I  K  ++ E
Sbjct: 646 ACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWE 705

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           E+KK G+ P+    LHDV+D  K+ELL  HSEKLA+ FGL+       +RIMKNLR+C D
Sbjct: 706 EIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCND 765

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +KF S++  RE IVRD  RFHHF +G CSC D+W
Sbjct: 766 CHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 205/438 (46%), Gaps = 69/438 (15%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +  T N L++ Y+K G ++ AR VF +MP+R  VSW  ++      GR  +AV  F++M+
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            EG  P S+F +++VL +CAA       +++H F +K  +   V V  ++L +Y KCG  
Sbjct: 156 GEGLAP-SQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDA 214

Query: 187 SDASRVFESMPERNEVTWSSMV-------------------------------AGFVQNE 215
             A  VFE M  R+E +W++MV                               AG+ QN 
Sbjct: 215 ETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNG 274

Query: 216 LYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF------- 267
           L + AL  F R      +E ++FT++SV+ ACA L  L  GKQ+H+ + +TG        
Sbjct: 275 LDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIM 334

Query: 268 ----------GS----------------NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
                     GS                N+ + ++L++ Y K G    A  VF  +  ++
Sbjct: 335 NALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRD 394

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           V+ W  MI G+ ++ ++ E M LF  M ++G  PN  T  +VLSAC+ +  +  GK    
Sbjct: 395 VIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHC 454

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
             ++      +V   + +I +  R+G +  A  +   + +      W S++ +   +   
Sbjct: 455 RAIRSLQE-QSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLG 513

Query: 422 ELAEIAAKQLF--GMEPD 437
           E A +  +++   G++PD
Sbjct: 514 EQAIVLFEEMLRVGVKPD 531



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 159/313 (50%), Gaps = 37/313 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T+ + L +CA  R    GK  H+ I+  G+   +   N LI+ Y+K G            
Sbjct: 298 TVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKA 357

Query: 83  ------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                       L+ G         AR+VFD M  R +++W  +I  Y  NG+  EA+ L
Sbjct: 358 VVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMEL 417

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F +M+R G  P S  T+++VL ACA+   +   KQ+H  A+++  +++V V  A++ VYA
Sbjct: 418 FRSMIRSGPEPNSH-TLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYA 476

Query: 182 KCGLISDASRVFESMPERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           + G +  A RVF+ +  R E VTW+SM+    Q+ L E+A++LF     +G++ ++ T  
Sbjct: 477 RSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYI 536

Query: 241 SVICACAGLAALIQGKQVH-AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIE 298
            V  AC     + +GK+ +  +L + G    M   + +VD+ A+ G + +A+ F+     
Sbjct: 537 GVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPV 596

Query: 299 EKNVVLWNTMISG 311
             + V+W ++++ 
Sbjct: 597 APDTVVWGSLLAA 609



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 32/222 (14%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RN F   +LL +YAK G ++DA  VF  MPER+ V+W+ MV G  +   + +A+  F   
Sbjct: 95  RNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDM 154

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG-- 285
              GL  +QF +++V+ +CA   A   G++VH+ + K G  S +  A+S++ MY KCG  
Sbjct: 155 VGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDA 214

Query: 286 -------------------CVVDAYF----------VFSGIEEKNVVLWNTMISGFSRHA 316
                               +V  Y           +F  +EE+++V WN +I+G++++ 
Sbjct: 215 ETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNG 274

Query: 317 RSVEVMILFEKMQQA-GLHPNEQTYISVLSACSHIGMVEKGK 357
                +  F +M  A  + P+E T  SVLSAC+++ M++ GK
Sbjct: 275 LDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGK 316



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 37/148 (25%)

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC---------------------------- 286
           G+ +HA   K G   + +  ++L+  YA+ G                             
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 287 ---------VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
                    + DA  VF+ + E++ V W  M+ G +R  R  + +  F  M   GL P++
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVK 365
               +VLS+C+       G+     ++K
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIK 191


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 350/574 (60%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L++C    A   G+  H  +I  G   +    ++LI+ Y+K G ++ A ++   +
Sbjct: 465  TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            P+  +VSW  +I  Y  +    EA+ LF  M   G   +     +S + ACA  R + + 
Sbjct: 525  PEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG-IQFDNIGFASAISACAGIRALRQG 583

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            +Q+H  +  A    ++ +  AL+ +YA+CG I +A   FE + ++N ++W+S+V+G  Q+
Sbjct: 584  QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQS 643

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EEAL +F R      E N FT  S I A A LA + QG+Q+H+++ KTG+ S    +
Sbjct: 644  GYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVS 703

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            +SL+ +YAK G + DA+  F+ + E+NV+ WN MI+G+S+H   +E + LFE+M+  G+ 
Sbjct: 704  NSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIM 763

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            PN  T++ VLSACSHIG+V++G  YF+ M K H+++P   HY C++D+LGRAG +  A +
Sbjct: 764  PNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAME 823

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             I  MP  A A +W +LL++C  ++N+E+ E AA  L  +EP+++  ++L+SNIYA +R+
Sbjct: 824  YIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQ 883

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
            W     +RKL++D  VKKE  +SW+E+K        G + HP   +IY  +  L     +
Sbjct: 884  WIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSE 943

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            +GY  ++   L++ E  +K  +   HSEKLA+ FGL+ L   +PIR+MKNLR+C DCH++
Sbjct: 944  IGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNW 1003

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S+I+ R  IVRD +RFHHF  G CSC DFW
Sbjct: 1004 IKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 188/331 (56%), Gaps = 1/331 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA   A  +G   H+  I  G++ D +    L++ YSKC  +  A K F   
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTT 423

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               IV WN ++ +Y       ++  +F  M  EG  P ++FT  S+L  C +   ++  
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLG 482

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K     NV+V + L+D+YAK G ++ A R+   +PE + V+W++M+AG+VQ+
Sbjct: 483 EQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQH 542

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +++ EAL LF   +  G++++    +S I ACAG+ AL QG+Q+HA     GFG+++   
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +YA+CG + +AY  F  I +KN + WN+++SG ++     E + +F +M +    
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            N  TY S +SA + +  +++G+    +++K
Sbjct: 663 VNMFTYGSAISAAASLANIKQGQQIHSMVLK 693



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 212/395 (53%), Gaps = 15/395 (3%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  H++    G ++  L +N+LI+ YSK G I  A+KVF+ +  + IV+W  +I   + N
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVF 171
           G E+EA+ LF +M      P + + +SSVL A + K  +FE  +QLH   +K       +
Sbjct: 240 GLEEEAILLFCDMHASEIFP-TPYVLSSVLSA-STKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V   L+ +Y++   +  A R+F +M  R+ V+++S+++G VQ    + AL LF + Q   
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L+ +  T++S++ ACA + AL +G Q+H+   K G  +++    SL+D+Y+KC  V  A+
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F   E +N+VLWN M+  + +     +   +F +MQ  G+ PN+ TY S+L  C+ +G
Sbjct: 418 KFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  G+     ++K    L NV+  S +ID+  + G +  A  ++  +P D   S W ++
Sbjct: 478 ALYLGEQIHTHVIKTGFQL-NVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS-WTAM 535

Query: 412 LASCRNYRNLELAEIAAKQLF------GMEPDNAG 440
           +A    +         A QLF      G++ DN G
Sbjct: 536 IAGYVQHDMFS----EALQLFEEMEYRGIQFDNIG 566



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 6/401 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C    +       H +I   G + + L  + L++ Y + G   GA KVFDE   R +
Sbjct: 65  LEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSV 124

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-CKQLH 158
            SWN +I  +       +   LF  ML EG TP + +T + VL AC      F   KQ+H
Sbjct: 125 FSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITP-NGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                   D +  V   L+D+Y+K G I  A +VF  +  ++ VTW +M++G  QN L E
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA++LF       +    + +SSV+ A   +     G+Q+H ++ K GF S  +  + LV
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            +Y++   ++ A  +FS +  ++ V +N++ISG  +   S   + LF KMQ+  L P+  
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  S+LSAC+ +G + KG       +K   +  ++     ++D+  +   +  A+   L 
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFFLT 422

Query: 399 MPFDATASMWGSLLASCRNYRNLELA-EIAAK-QLFGMEPD 437
              +    +W  +L +     NL  + EI  + Q+ GM P+
Sbjct: 423 TETENIV-LWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 1/226 (0%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L  C     +FE  +LH    K+  D    +  +L+D Y + G    A +VF+    R+
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC-AGLAALIQGKQVH 259
             +W+ M+  FV  +   +   LFRR    G+  N +T + V+ AC  G  A    KQVH
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           +     GF S+   A+ L+D+Y+K G +  A  VF+ I  K++V W  MISG S++    
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           E ++LF  M  + + P      SVLSA + I + E G+    L++K
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK 289


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/600 (40%), Positives = 352/600 (58%), Gaps = 57/600 (9%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA+I+  GL  +   +  ++  Y+  G +  A  VFD +     + +N+II +YT 
Sbjct: 96  GQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 112 NGR--------EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK 163
           +G         E  A   F+ +L +       FT+  VL +CA    V   + +H   L+
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGD------NFTLPFVLKSCADLSRVCMGRCVHGQGLR 209

Query: 164 AAMDRNVFVGTALLDVYAKCGLISDASR-------------------------------V 192
             ++ + +VG +L+D+Y KCG+I DA +                               +
Sbjct: 210 VGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDL 269

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY--NQFTISSVICACAGLA 250
           FE M  RN V+W++M++G+ QN   E+AL LF      G E   N  TI SV+ ACA  A
Sbjct: 270 FERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSA 329

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTM 308
           AL +G+++H      G   N    ++L  MYAKC  +V+A   F  I +  KN++ WNTM
Sbjct: 330 ALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTM 389

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+ ++ H   VE + +FE M +AG+ P+  T++ +LS CSH G+++ G ++F+ M   H+
Sbjct: 390 ITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHS 449

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           V P V HY+C++D+LGRAG + EA +LI  MP  A  S+WG+LLA+CR++RNLE+AE+AA
Sbjct: 450 VEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAA 509

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK---- 484
           ++LF +EPDN+GN++LLSN+YA    WEEV + R L++   +KK    SW+EI GK    
Sbjct: 510 RRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLF 569

Query: 485 ----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
               ++HP+  EIY  LE L E++K  GY P+T   LHD+ +  K+  L  HSEKLA+ F
Sbjct: 570 MGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAF 629

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GL+   PGV +R+ KNLRICGDCH+  KF S+I  RE IVRDLNRFH F +GSCSC D+W
Sbjct: 630 GLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 162/374 (43%), Gaps = 49/374 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE- 93
           TL   L+SCA       G+  H + + +GL  D      LI+ Y KCG+I  ARK+FD+ 
Sbjct: 183 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 242

Query: 94  ------------------------------MPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                         M  R IVSW  +I  YT NG  ++A+ LF 
Sbjct: 243 IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFD 302

Query: 124 NMLREGKTPYSEF-TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
            ML++G      + T+ SVL ACA    +   +++H FA    +  N  V TAL  +YAK
Sbjct: 303 EMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAK 362

Query: 183 CGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           C  + +A   F+ + +  +N + W++M+  +  +    EA+ +F      G++ +  T  
Sbjct: 363 CYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFM 422

Query: 241 SVICAC-------AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            ++  C       AGL        +H+V  +          + +VD+  + G +V+A  +
Sbjct: 423 GLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEH------YACVVDLLGRAGRLVEAKEL 476

Query: 294 FSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
            S +  +    +W  +++    H R++E+  L  +        N   Y+ + +  +  GM
Sbjct: 477 ISQMPMQAGPSVWGALLAACRSH-RNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 535

Query: 353 VEKGKSYFDLMVKQ 366
            E+ K    L+  Q
Sbjct: 536 WEEVKKLRALLKYQ 549


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 350/574 (60%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L++C    A   G+  H  +I  G   +    ++LI+ Y+K G ++ A ++   +
Sbjct: 465  TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            P+  +VSW  +I  Y  +    EA+ LF  M   G   +     +S + ACA  R + + 
Sbjct: 525  PEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG-IQFDNIGFASAISACAGIRALRQG 583

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            +Q+H  +  A    ++ +  AL+ +YA+CG I +A   FE + ++N ++W+S+V+G  Q+
Sbjct: 584  QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQS 643

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EEAL +F R      E N FT  S I A A LA + QG+Q+H+++ KTG+ S    +
Sbjct: 644  GYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVS 703

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            +SL+ +YAK G + DA+  F+ + E+NV+ WN MI+G+S+H   +E + LFE+M+  G+ 
Sbjct: 704  NSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIM 763

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            PN  T++ VLSACSHIG+V++G  YF+ M K H+++P   HY C++D+LGRAG +  A +
Sbjct: 764  PNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAME 823

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             I  MP  A A +W +LL++C  ++N+E+ E AA  L  +EP+++  ++L+SNIYA +R+
Sbjct: 824  YIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQ 883

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
            W     +RKL++D  VKKE  +SW+E+K        G + HP   +IY  +  L     +
Sbjct: 884  WIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSE 943

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            +GY  ++   L++ E  +K  +   HSEKLA+ FGL+ L   +PIR+MKNLR+C DCH++
Sbjct: 944  IGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNW 1003

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S+I+ R  IVRD +RFHHF  G CSC DFW
Sbjct: 1004 IKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 188/331 (56%), Gaps = 1/331 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA   A  +G   H+  I  G++ D +    L++ YSKC  +  A K F   
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXT 423

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               IV WN ++ +Y       ++  +F  M  EG  P ++FT  S+L  C +   ++  
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLG 482

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K     NV+V + L+D+YAK G ++ A R+   +PE + V+W++M+AG+VQ+
Sbjct: 483 EQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQH 542

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +++ EAL LF   +  G++++    +S I ACAG+ AL QG+Q+HA     GFG+++   
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +YA+CG + +AY  F  I +KN + WN+++SG ++     E + +F +M +    
Sbjct: 603 NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            N  TY S +SA + +  +++G+    +++K
Sbjct: 663 VNMFTYGSAISAAASLANIKQGQQIHSMVLK 693



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 212/395 (53%), Gaps = 15/395 (3%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  H++    G ++  L +N+LI+ YSK G I  A+KVF+ +  + IV+W  +I   + N
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVF 171
           G E+EA+ LF +M      P + + +SSVL A + K  +FE  +QLH   +K       +
Sbjct: 240 GLEEEAILLFCDMHASEIFP-TPYVLSSVLSA-STKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V   L+ +Y++   +  A R+F +M  R+ V+++S+++G VQ    + AL LF + Q   
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L+ +  T++S++ ACA + AL +G Q+H+   K G  +++    SL+D+Y+KC  V  A+
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F   E +N+VLWN M+  + +     +   +F +MQ  G+ PN+ TY S+L  C+ +G
Sbjct: 418 KFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  G+     ++K    L NV+  S +ID+  + G +  A  ++  +P D   S W ++
Sbjct: 478 ALYLGEQIHTHVIKTGFQL-NVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS-WTAM 535

Query: 412 LASCRNYRNLELAEIAAKQLF------GMEPDNAG 440
           +A    +         A QLF      G++ DN G
Sbjct: 536 IAGYVQHDMFS----EALQLFEEMEYRGIQFDNIG 566



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 6/401 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C    +       H +I   G + + L  + L++ Y + G   GA KVFDE   R +
Sbjct: 65  LEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSV 124

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-CKQLH 158
            SWN +I  +       +   LF  ML EG TP + +T + VL AC      F   KQ+H
Sbjct: 125 FSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITP-NGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                   D +  V   L+D+Y+K G I  A +VF  +  ++ VTW +M++G  QN L E
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA++LF       +    + +SSV+ A   +     G+Q+H ++ K GF S  +  + LV
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            +Y++   ++ A  +FS +  ++ V +N++ISG  +   S   + LF KMQ+  L P+  
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T  S+LSAC+ +G + KG       +K   +  ++     ++D+  +   +  A+   L 
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFFLX 422

Query: 399 MPFDATASMWGSLLASCRNYRNLELA-EIAAK-QLFGMEPD 437
              +    +W  +L +     NL  + EI  + Q+ GM P+
Sbjct: 423 TETENIV-LWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 1/226 (0%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L  C     +FE  +LH    K+  D    +  +L+D Y + G    A +VF+    R+
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC-AGLAALIQGKQVH 259
             +W+ M+  FV  +   +   LFRR    G+  N +T + V+ AC  G  A    KQVH
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           +     GF S+   A+ L+D+Y+K G +  A  VF+ I  K++V W  MISG S++    
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           E ++LF  M  + + P      SVLSA + I + E G+    L++K
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK 289


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 349/556 (62%), Gaps = 10/556 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  H   I      D+  S  LI+ YS+   +  A  +F       +V+WN ++  YT +
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQS 502

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
               + + LF  M ++G+    +FT+++VL  C     + + KQ+H +A+K+  D +++V
Sbjct: 503 HDGHKTLELFALMHKQGERS-DDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 561

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
            + +LD+Y KCG +S A   F+S+P  ++V W+++++G ++N   E AL +F + +++G+
Sbjct: 562 SSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGV 621

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             ++FTI+++  A + L AL QG+Q+HA   K    S+ F  +SLVDMYAKCG + DAY 
Sbjct: 622 LPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYC 681

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F  IE  N+  WN M+ G ++H    E + LF++M+  G+ P++ T+I VLSACSH G+
Sbjct: 682 LFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGL 741

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           V +   Y   M + + + P + HYSC+ D LGRAGL+ EA +LI +M  +A+ASM+ +LL
Sbjct: 742 VSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLL 801

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
           A+CR   + E  +  A +L  +EP ++  ++LLSN+YAA  +W+E+  AR +++  +VKK
Sbjct: 802 AACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKK 861

Query: 473 EKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           +   SW+E+K K        R++P+   IY K++ ++ ++K+ GY PET+  L DVE+  
Sbjct: 862 DPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEE 921

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K+  L +HSEKLA+ FGL+   P  PIR++KNLR+CGDCH+ MK+ S++  RE ++RD N
Sbjct: 922 KERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDAN 981

Query: 585 RFHHFTNGSCSCWDFW 600
           RFH F +G CSC D+W
Sbjct: 982 RFHRFKDGICSCGDYW 997



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 221/445 (49%), Gaps = 13/445 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +  R  +   G+  H   + +GL+     SN LIN Y K   I  AR VF+ M
Sbjct: 324 TFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNM 383

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
            +R ++SWN++I     +  E EAV LF+ +LR G  P   +T++SVL A ++  +    
Sbjct: 384 SERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKP-DHYTMTSVLKAASSLPEGLSL 442

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE---VTWSSMVAG 210
            KQ+HV A+K     + FV TAL+D Y++   + +A  +F     RN    V W++M++G
Sbjct: 443 SKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF----GRNNFDLVAWNAMMSG 498

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q+    + L LF      G   + FT+++V+  C  L A+ QGKQVHA   K+G+  +
Sbjct: 499 YTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLD 558

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           ++ +S ++DMY KCG +  A F F  I   + V W T+ISG   +      + +F +M+ 
Sbjct: 559 LWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRL 618

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ P+E T  ++  A S +  +E+G+      +K  N   + F  + ++D+  + G I 
Sbjct: 619 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKL-NCTSDPFVGTSLVDMYAKCGSID 677

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL--FGMEPDNAGNHLLLSNI 448
           +AY L   +      + W ++L     +   + A    KQ+   G++PD      +LS  
Sbjct: 678 DAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSAC 736

Query: 449 YAANRRWEEVARARKLIRDSEVKKE 473
             +    E     R + RD  +K E
Sbjct: 737 SHSGLVSEAYKYIRSMHRDYGIKPE 761



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 154/336 (45%), Gaps = 46/336 (13%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA+I+ +  N +    N LI+ YSKCG ++ AR+VFD+MP+R +VSWN+I+ +Y  
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 112 NGRE-----QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
           +        +EA  LF  +LR+     S  T+S +L  C     V   +  H +A K  +
Sbjct: 125 SSEGVVENVKEAFLLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGL 183

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           D + FV  AL+++Y K G + +   +FE MP R+ V W+ M+  +++    EEA+ L   
Sbjct: 184 DGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 243

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
               GL  N+ T+         L + I G    A   K+    N  +A S          
Sbjct: 244 FHTSGLHPNEITLR--------LLSRISGDDSEAGQVKSFENGNDASAVS---------- 285

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
                          ++  N ++SG+    +   ++  F  M ++ L  ++ T+I VL+ 
Sbjct: 286 --------------EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLAT 331

Query: 347 CSHIGMVEKGKSY--------FDLMVKQHNVLPNVF 374
              +  +  G+           DLM+   N L N++
Sbjct: 332 AVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMY 367



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 177/405 (43%), Gaps = 41/405 (10%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T   TL   L+ C         +  H     +GL+ D   +  L+N Y K G +   R +
Sbjct: 150 TSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVL 209

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F+EMP R +V WN ++ +Y   G ++EA+ L       G  P +E T+  +        D
Sbjct: 210 FEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHP-NEITLRLL---SRISGD 265

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
             E  Q+  F                          +DAS V E +  RN++     ++G
Sbjct: 266 DSEAGQVKSFENG-----------------------NDASAVSEII-SRNKI-----LSG 296

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           ++    Y   L  F       LE +Q T   V+     L +L  G+QVH +  K G    
Sbjct: 297 YLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLM 356

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +  ++SL++MY K   +  A  VF+ + E++++ WN++I+G ++    VE + LF ++ +
Sbjct: 357 LTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLR 416

Query: 331 AGLHPNEQTYISVLSACSHIGM-VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            GL P+  T  SVL A S +   +   K      +K +NV  + F  + +ID   R   +
Sbjct: 417 CGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNV-ADSFVSTALIDAYSRNRCM 475

Query: 390 HEAYDLILNMPFDATASMWGSLLA----SCRNYRNLELAEIAAKQ 430
            EA  L     FD  A  W ++++    S   ++ LEL  +  KQ
Sbjct: 476 KEAEVLFGRNNFDLVA--WNAMMSGYTQSHDGHKTLELFALMHKQ 518



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L+ GK  HA +         F  ++L+ MY+KCG +  A  VF  + E+++V WN++++ 
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 312 FSRHARSV-----EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           +++ +  V     E  +LF  ++Q  ++ +  T   +L  C H G V   +S+     K 
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKI 181

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             +  + F    +++I  + G + E   L   MP+     +W  +L
Sbjct: 182 -GLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVV-LWNLML 225


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/591 (38%), Positives = 343/591 (58%), Gaps = 10/591 (1%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINF 77
           S  AS   +  A +  T    L++C R       G   H+ +I  G + D      L+  
Sbjct: 87  SVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCL 146

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           YSK G ++ ARKVFDE+P++ +VSW  II  Y  +G   EA+ LF  +L  G  P S FT
Sbjct: 147 YSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDS-FT 205

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +  +L AC+   D+   + +  +  ++    NVFV T+L+D+YAKCG + +A RVF+ M 
Sbjct: 206 LVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMV 265

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           E++ V WS+++ G+  N + +EAL +F   Q   +  + + +  V  AC+ L AL  G  
Sbjct: 266 EKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNW 325

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
              ++    F SN    ++L+D YAKCG V  A  VF G+  K+ V++N +ISG +    
Sbjct: 326 ARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGH 385

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
                 +F +M + G+ P+  T++ +L  C+H G+V+ G  YF  M    +V P + HY 
Sbjct: 386 VGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYG 445

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
           CM+D+  RAGL+ EA DLI +MP +A + +WG+LL  CR +++ +LAE   KQL  +EP 
Sbjct: 446 CMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPW 505

Query: 438 NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPR 489
           N+G+++LLSNIY+A+ RW+E  + R  +    ++K    SWVE+         G  +HP 
Sbjct: 506 NSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPL 565

Query: 490 IAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV 549
             +IY KLE L +++++ GY P TE  L DVE+  K+  L  HSEKLA+ F L+      
Sbjct: 566 SHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKD 625

Query: 550 PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            IR++KNLR+CGDCH  +K  S++ GRE IVRD NRFHHFT GSCSC D+W
Sbjct: 626 VIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 191/350 (54%), Gaps = 3/350 (0%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           + K CH  ++ +GL+ DT   N+L+           A  VF + P   I  +NT+I    
Sbjct: 18  QAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMV 77

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK-QLHVFALKAAMDRN 169
           +N   ++AV+++ +M + G  P   FT   VL AC      F     LH   +K   D +
Sbjct: 78  SNDAFRDAVSVYASMRQHGFAP-DNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWD 136

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           VFV T L+ +Y+K G ++DA +VF+ +PE+N V+W++++ G++++  + EAL LFR    
Sbjct: 137 VFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLE 196

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           +GL  + FT+  ++ AC+ +  L  G+ +   + ++G   N+F A+SLVDMYAKCG + +
Sbjct: 197 MGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEE 256

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF G+ EK+VV W+ +I G++ +    E + +F +MQ+  + P+    + V SACS 
Sbjct: 257 ARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSR 316

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +G +E G     LM      L N    + +ID   + G + +A ++   M
Sbjct: 317 LGALELGNWARGLM-DGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGM 365



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 143/297 (48%), Gaps = 6/297 (2%)

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
           C     + + + KQ H   L+  + ++ ++   LL           A+ VF   P  N  
Sbjct: 8   CFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIF 67

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHAV 261
            +++++ G V N+ + +A+ ++   +  G   + FT   V+ AC  L      G  +H++
Sbjct: 68  LYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSL 127

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + KTGF  ++F  + LV +Y+K G + DA  VF  I EKNVV W  +I G+       E 
Sbjct: 128 VIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEA 187

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           + LF  + + GL P+  T + +L ACS +G +  G+ + D  +++   + NVF  + ++D
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGR-WIDGYMRESGSVGNVFVATSLVD 246

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           +  + G + EA  +   M  +     W +L+   + Y +  + + A    F M+ +N
Sbjct: 247 MYAKCGSMEEARRVFDGM-VEKDVVCWSALI---QGYASNGMPKEALDVFFEMQREN 299


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 349/579 (60%), Gaps = 25/579 (4%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKV 90
           T+ + + +C  E   VR G   H+  + MGL +D   S  L++ Y+K  +   +  A KV
Sbjct: 256 TMSSMISACT-ELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKV 314

Query: 91  FDEMPQRCIVSWNTIIGSYTTNG-REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           F+ MP+  ++SW  +I  Y  +G +E + +ALF  ML E   P +  T SS+L +CA+  
Sbjct: 315 FERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKP-NHITYSSILKSCASIS 373

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D    +Q+H   +K+       VG AL+ +YA+ G + +A RVF  + ER      SM+ 
Sbjct: 374 DHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYER------SMIP 427

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
              +   +     L  R   + +  +  T +S+I A A +  L +G+Q+HA+  K GFGS
Sbjct: 428 CITEGRDFP----LDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGS 483

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           + F ++SLV MY++CG + DA   F+ ++++NV+ W +MISG ++H  +   + LF  M 
Sbjct: 484 DRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMI 543

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ PN+ TYI+VLSACSH+G+V +GK YF  M + H ++P + HY+CM+D+L R+G++
Sbjct: 544 LTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIV 603

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP  A A +W +LL +CR++ N+E+ EI AK +  +EP +   ++LLSN+Y
Sbjct: 604 KEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLY 663

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           A    W+EVAR R  +RD+ + KE   SW+E++        G  +HPR  +IY KL+ LV
Sbjct: 664 ADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLV 723

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            ++K +GY P+T   LHD+ D  K++ L+ HSEK+A+ FGL+      PIRI KNLR+C 
Sbjct: 724 RQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCA 783

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHS +K+ S+   RE I+RD NRFH   +G CSC ++W
Sbjct: 784 DCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 183/352 (51%), Gaps = 16/352 (4%)

Query: 52  GKVCHAKII-GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ-RCIVSWNTIIGSY 109
           G+  H +++ G  L+ D + +N L+  YS+CG ++ AR VFD M   R IVSW  +    
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-----DVFECKQLHVFALKA 164
             NG E+ ++ L   ML  G  P + +T+ +   AC                +H   L  
Sbjct: 127 ARNGAERGSLLLIGEMLESGLLP-NAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWG 185

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
               +V VG+AL+D+ A+ G ++ A +VF+ + E+  V W+ +++ +VQ E  EEA+ LF
Sbjct: 186 T---DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELF 242

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
                 G E +++T+SS+I AC  L ++  G Q+H++  + G  S+   +  LVDMYAK 
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKS 302

Query: 285 --GCVVD-AYFVFSGIEEKNVVLWNTMISGFSRHA-RSVEVMILFEKMQQAGLHPNEQTY 340
             G  +D A  VF  + + +V+ W  +ISG+ +   +  +VM LF +M    + PN  TY
Sbjct: 303 NIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITY 362

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            S+L +C+ I   + G+     ++K +    +    + ++ +   +G + EA
Sbjct: 363 SSILKSCASISDHDSGRQVHAHVIKSNQASAHTVG-NALVSMYAESGCMEEA 413



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + + + A      +G+  HA  +  G  +D   SN L++ YS+CG +  A + F+E
Sbjct: 451 STFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNE 510

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R ++SW ++I     +G  + A++LF +M+  G  P ++ T  +VL AC+    V E
Sbjct: 511 LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKP-NDVTYIAVLSACSHVGLVRE 569

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            K+          +   +     ++D+ A+ G++ +A      MP + + + W +++ 
Sbjct: 570 GKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLG 627


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 359/577 (62%), Gaps = 13/577 (2%)

Query: 34  STLQATLQSCARERAPVRG--KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ST  A + +C   ++ +RG  ++C+  ++  G   D    N ++  + KCG++  A ++F
Sbjct: 133 STYDALINACIGLKS-IRGVKRLCNY-MVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLF 190

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           DEMP R  VSW TII  Y  +G   EA  LFI ++RE        T ++++ A A    +
Sbjct: 191 DEMPARNAVSWGTIISGYVDSGNYVEAFRLFI-LMREEFYDCGPRTFATMIRASAGLEII 249

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
           F  +QLH  A+KA + +++FV  AL+D+Y+KCG + DA  VF+ MP++  V W+S++AG+
Sbjct: 250 FPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGY 309

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             +   EEAL L+   +  G++ + FT S +I  C+ LA++ + KQVHA L + GFG ++
Sbjct: 310 ALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDV 369

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            A ++LVD Y+K G V DA  VF  +  +N++ WN +I+G+  H    E + +FEKM + 
Sbjct: 370 VANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLRE 429

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ PN  T+++VLSACS  G+ E+G   F  M + H V P   H++CMI++LGR GL+ E
Sbjct: 430 GMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDE 489

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY LI   PF  TA+MW +LL +CR + NLEL + AA++L+GMEP+   N+++L NIY +
Sbjct: 490 AYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNS 549

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
           + + +E A   + ++   ++   + SW+E+         G ++H +I ++  K+++L+  
Sbjct: 550 SGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLN 609

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           + KLGY PE ++ +    D  ++++ ++HSEKLA+ +GL+      P++I+++ RIC DC
Sbjct: 610 ISKLGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDC 669

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HS +K  + I  RE ++RD +RFHHF +GSCSC D+W
Sbjct: 670 HSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 127/274 (46%), Gaps = 9/274 (3%)

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAAL 252
           E+  +++ V   S +   V  + Y +AL +F   ++  G      T  ++I AC GL ++
Sbjct: 89  ETHVKKSSVGICSQIEKLVLCKKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSI 148

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
              K++   +   GF  + +  + ++ M+ KCG ++DA  +F  +  +N V W T+ISG+
Sbjct: 149 RGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGY 208

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
                 VE   LF  M++       +T+ +++ A + + ++  G+      +K   +  +
Sbjct: 209 VDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKA-GLGQD 267

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQ 430
           +F    +ID+  + G + +A+ +   MP D T   W S++A  +   Y    L      +
Sbjct: 268 IFVSCALIDMYSKCGSLEDAHCVFDEMP-DKTIVGWNSIIAGYALHGYSEEALDLYHEMR 326

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
             G++ D    H   S I     R   VARA+++
Sbjct: 327 DSGVKMD----HFTFSIIIRICSRLASVARAKQV 356


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 340/574 (59%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C+R +A   G+  HA I+  G  ++    N LI  Y+ CG I  AR VFD M
Sbjct: 123 TFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGM 182

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R IV+WN+++  YT NG   E V LF  +L E +  + + T+ SVL AC    ++   
Sbjct: 183 PERSIVAWNSMLSGYTKNGLWDEVVKLFRKIL-ELRIEFDDVTMISVLMACGRLANLEIG 241

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  + +   + RN  + T+L+D+YAKCG +  A ++F+ M +R+ V WS+M++G+ Q 
Sbjct: 242 ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  +EAL LF   Q   +  N+ T+ SV+ +CA L A   GK VH  + K      +   
Sbjct: 302 DRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLG 361

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+D YAKCG +  +  VF  +  KNV  W  +I G + +      +  F  M +  + 
Sbjct: 362 TQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVK 421

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VLSACSH  +V++G+  F+ M +  ++ P + HY CM+DILGRAG + EAY 
Sbjct: 422 PNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQ 481

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I NMPF   A +W +LLASCR ++N+E+AE + + +  +EP ++G+++LLSN YA   R
Sbjct: 482 FIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGR 541

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
            E+  R R LI++ E+KK    S +E+ G           H    EI+  L+K+++++K+
Sbjct: 542 VEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKR 601

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P T+    + E+  K+  + HHSEKLA+ +GL+   P   IRI KNLR+C DCH+ 
Sbjct: 602 LGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNA 661

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KF S++  R  IVRD NRFHHF +G CSC D+W
Sbjct: 662 TKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 182/334 (54%), Gaps = 3/334 (0%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           I  A  +F+ + +    ++N +I           A+ LF  M  E    + +FT SSVL 
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKM-HEKSVQHDKFTFSSVLK 129

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           AC+  + + E +Q+H   LK+    N FV   L+ +YA CG I  A  VF+ MPER+ V 
Sbjct: 130 ACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVA 189

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+SM++G+ +N L++E + LFR+   L +E++  T+ SV+ AC  LA L  G+ +   + 
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV 249

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
             G   N    +SL+DMYAKCG V  A  +F  +++++VV W+ MISG+++  R  E + 
Sbjct: 250 SKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALN 309

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF +MQ+  ++PNE T +SVL +C+ +G  E GK +    +K+  +   V   + +ID  
Sbjct: 310 LFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGK-WVHFYIKKKKMKLTVTLGTQLIDFY 368

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
            + G I  + ++   M F    + W +L+    N
Sbjct: 369 AKCGYIDRSVEVFKEMSFKNVFT-WTALIQGLAN 401


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/542 (41%), Positives = 330/542 (60%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +T++ NI++  +     +  AR  FD MP + + SWNT+I +    G   EA  LF  M 
Sbjct: 103 NTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMP 162

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +    +S      V  AC       EC         AA  R+V   TA++  Y K G +
Sbjct: 163 EKNCVSWSAMVSGYV--ACGDLDAAVEC-------FYAAPMRSVITWTAMITGYMKFGRV 213

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A R+F+ M  R  VTW++M+AG+V+N   E+ L LFR     G++ N  +++SV+  C
Sbjct: 214 ELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGC 273

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + L+AL  GKQVH ++CK    S+  A +SLV MY+KCG + DA+ +F  I  K+VV WN
Sbjct: 274 SNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWN 333

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MISG+++H    + + LF++M++ GL P+  T+++VL AC+H G+V+ G  YF+ M + 
Sbjct: 334 AMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRD 393

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             +     HY+CM+D+LGRAG + EA DLI +MPF    +++G+LL +CR ++NL LAE 
Sbjct: 394 FGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEF 453

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AAK L  ++P  A  ++ L+N+YAA  RW+ VA  R+ ++D+ V K    SW+EI     
Sbjct: 454 AAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVH 513

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                 R HP +A I+ KL+ L ++MK  GY P+ E  LHDV +  K++LL+ HSEKLA+
Sbjct: 514 GFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAI 573

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGL+ +  GVPIR+ KNLR+CGDCHS  K+ S I GRE IVRD  RFHHF +G CSC D
Sbjct: 574 AFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRD 633

Query: 599 FW 600
           +W
Sbjct: 634 YW 635



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 141/334 (42%), Gaps = 71/334 (21%)

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE-LYEEALILFR 225
           + NV     L+  Y +CG I  A RVFE M  ++ VTW+S++A F +    +E A  LF 
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFE 97

Query: 226 R-AQVLGLEYNQF--------------------------TISSVICACAGLAALIQGKQV 258
           +  Q   + YN                            + +++I A A +  + + +++
Sbjct: 98  KIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRL 157

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCG---------------------CVVDAYFVFSGI 297
            + + +     N  + S++V  Y  CG                      ++  Y  F  +
Sbjct: 158 FSAMPE----KNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRV 213

Query: 298 E----------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
           E           + +V WN MI+G+  + R+ + + LF  M + G+ PN  +  SVL  C
Sbjct: 214 ELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGC 273

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           S++  ++ GK    L+ K   +  +    + ++ +  + G + +A++L + +P       
Sbjct: 274 SNLSALQLGKQVHQLVCKC-PLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVC- 331

Query: 408 WGSLLASCRNY----RNLELAEIAAKQLFGMEPD 437
           W ++++    +    + L L +   K+  G++PD
Sbjct: 332 WNAMISGYAQHGAGKKALRLFDEMKKE--GLKPD 363



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L + L  C+   A   GK  H  +    L++DT     L++ YSKCG +  A ++F ++
Sbjct: 265 SLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQI 324

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ +V WN +I  Y  +G  ++A+ LF  M +EG  P    T  +VL AC     V   
Sbjct: 325 PRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKP-DWITFVAVLLACNHAGLVDLG 383

Query: 155 KQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMP 197
            Q         M R+  + T       ++D+  + G +S+A  + +SMP
Sbjct: 384 VQYF-----NTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMP 427


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/583 (36%), Positives = 348/583 (59%), Gaps = 13/583 (2%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T+ + L  C            H   +  GL+++    N +I+ Y K G++   RK
Sbjct: 167 AGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRK 226

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD M  R +V+WN+II  +   G+   AV +F  M   G +P    T+ S+  A A   
Sbjct: 227 VFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSP-DVLTLLSLASAIAQCG 285

Query: 150 DVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           D+   + +H + ++   D  ++  G A++D+YAK   I  A R+F+SMP R+ V+W++++
Sbjct: 286 DICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLI 345

Query: 209 AGFVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            G++QN L  EA+ ++   Q   GL+  Q T  SV+ A + L AL QG ++HA+  KTG 
Sbjct: 346 TGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGL 405

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             +++  + ++D+YAKCG + +A  +F     ++   WN +ISG   H    + + LF +
Sbjct: 406 NLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQ 465

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQQ G+ P+  T++S+L+ACSH G+V++G+++F++M   + + P   HY+CM+D+ GRAG
Sbjct: 466 MQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAG 525

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            + +A+D I NMP    +++WG+LL +CR + N+E+ ++A++ LF ++P N G ++L+SN
Sbjct: 526 QLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSN 585

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN----------HPRIAEIYSKL 497
           +YA   +W+ V   R L+R   ++K    S +E+K   N          HP+  EI  +L
Sbjct: 586 MYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQREL 645

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
             L+ +++ LGY P+    L DVE+  K+++L +HSE+LA+ FG++   P  P+ I KNL
Sbjct: 646 LDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNL 705

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+CGDCH+  K+ S+I  RE IVRD NRFHHF +G CSC DFW
Sbjct: 706 RVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 207/397 (52%), Gaps = 8/397 (2%)

Query: 47  RAPVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTI 105
           + P      HA  + +GL   D   S  L++ Y + G +  A + FDEM  R + +WN +
Sbjct: 82  QGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAM 141

Query: 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA 165
           +     N R  EAV LF  M+ EG       TVSSVL  C    D      +H++A+K  
Sbjct: 142 LSGLCRNARAAEAVGLFGRMVMEG-VAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHG 200

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
           +D  +FV  A++DVY K G++ +  +VF+ M  R+ VTW+S+++G  Q      A+ +F 
Sbjct: 201 LDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFC 260

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKC 284
             +  G+  +  T+ S+  A A    +  G+ VH  + + G+   ++ A +++VDMYAK 
Sbjct: 261 GMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKL 320

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-AGLHPNEQTYISV 343
             +  A  +F  +  ++ V WNT+I+G+ ++  + E + +++ MQ+  GL P + T++SV
Sbjct: 321 SKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSV 380

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           L A SH+G +++G     L +K    L +V+  +C+ID+  + G + EA  L    P  +
Sbjct: 381 LPAYSHLGALQQGTRMHALSIKTGLNL-DVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRS 439

Query: 404 TASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDN 438
           T   W ++++      +    L+  +  Q  G+ PD+
Sbjct: 440 TGP-WNAVISGVGVHGHGAKALSLFSQMQQEGISPDH 475


>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
 gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
          Length = 592

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/595 (39%), Positives = 348/595 (58%), Gaps = 23/595 (3%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMG-----LNNDTLTSNILINFY 78
           A   A A EL+ L   L +    RA  +G+  H  ++  G      ++ TL  + L+ FY
Sbjct: 3   APLPAVARELAELLVALSAA---RALPKGQQLHGHLLKAGHVPATASSHTLLGHHLLTFY 59

Query: 79  SKCGLISGARKVFDEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           ++C L   + + F ++P      +W+++I S+  NG    A   F  ML  G  P ++  
Sbjct: 60  ARCALPDLSLRAFLDLPAPPSPAAWSSLISSFAQNGLAAAAFDTFRRMLAAG-VPATDRN 118

Query: 138 VSSVLCACAA----KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           + S   A AA     R  F    LH  A K     +VFVG+A+LD+YAKCG ++DA R+F
Sbjct: 119 IPSAAKAVAAAETLSRPPFAPHALHGLAAKTPFAGDVFVGSAILDMYAKCGHLADARRLF 178

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + MPERN V+WS+++ G+    ++  A+ +FR A    +  N FT+SS+I  CA      
Sbjct: 179 DEMPERNVVSWSALICGYADAGMHPAAMGIFRLALEEAVPVNDFTVSSIIRVCAAATLFE 238

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G QVHA   KT   ++ F  SSLV +Y+KCG V  AY VF+   EKN+ +WN ++   +
Sbjct: 239 LGAQVHARATKTALDASPFVGSSLVSVYSKCGLVECAYRVFNEAPEKNLGIWNAVLIASA 298

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           +H  +      F +MQ AG  PN  T++ +++ACSH G+V++GK YF LM K + + P  
Sbjct: 299 QHGHTAAAFERFMEMQNAGFRPNHITFLCLVTACSHAGLVDEGKRYFSLM-KDYGIEPQA 357

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY+ M+D+LGR G I EA DLI +MP +   S+WG+LL SCR +++ + AEIAAK+LF 
Sbjct: 358 EHYASMVDLLGRVGRIKEALDLIESMPMEPPESVWGALLMSCRIFKDADTAEIAAKRLFE 417

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------R 485
               ++G H+LLS+ YAA  R  + A ARK +RD+ V+KE   SW+E  G+        R
Sbjct: 418 TGSRSSGAHMLLSSTYAAAGRHIDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCR 477

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
            H R  EIY  LEK+ E+M+  GY  +T   + DV+   K+  + +HSE+LA+  GL+ +
Sbjct: 478 RHQRSEEIYKVLEKVGEKMEAAGYVADTSAVVKDVDGDEKRATVRYHSERLAIGLGLLIV 537

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             GVPIR+MKNLR+C DCHS +K+ ++  GR  ++RD  RFH F +G CSC DFW
Sbjct: 538 PQGVPIRVMKNLRVCDDCHSAIKYLTKCTGRVVVLRDNRRFHRFEDGVCSCGDFW 592


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 331/557 (59%), Gaps = 9/557 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA +   G   D   SN L+  Y K G +    K+++ M  R ++SWN  +     
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G     + +F +ML EG  P + +T  S+L +C+   DV   +Q+H   +K  +D N F
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIP-NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V TAL+D+YAKC  + DA   F  +  R+  TW+ ++  + Q    E+AL  FR+ Q  G
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ N+FT++  +  C+ LA+L  G+Q+H+++ K+G  S+MF  S+LVDMYAKCGC+ +A 
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  +  ++ + WNT+I G++++ +  + +  F  M   G+ P+  T+  +LSACSH G
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQG 732

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+GK +F+ M +   + P V H +CM+DILGR G   E  D I  M     A +W ++
Sbjct: 733 LVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETV 792

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L + + + NL L E AA +LF ++P+   +++LLSNI+A   RW++V R R L+    VK
Sbjct: 793 LGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVK 852

Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           KE   SWVE  G+         +HP+I EI+ KL++L  E+  + Y P+TE+ LH+V ++
Sbjct: 853 KEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGET 912

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
            K+E L  HSE+LAL F L+       IRI KNLRIC DCH  MK  S I  +E +VRD+
Sbjct: 913 EKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDV 972

Query: 584 NRFHHFTNGSCSCWDFW 600
            RFHHF NG+CSC DFW
Sbjct: 973 RRFHHFKNGACSCNDFW 989



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 131/410 (31%), Positives = 220/410 (53%), Gaps = 8/410 (1%)

Query: 9   HKFYYK-SFSSSAIASASAN----ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMG 63
           H F Y+ +F       A  N    ++  +L    + L+ CA +R+    K  H  I+   
Sbjct: 83  HNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDV 142

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           +N D+     L+N Y+KC   + AR V  +MP R +VSW  +I      G   +++ LF 
Sbjct: 143 INPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQ 202

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M  EG  P +EFT+++ L AC+    +   KQ+H  A K  +  ++FVG+AL+D+YAKC
Sbjct: 203 EMQNEGIMP-NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC 261

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G I  AS++F  MPE+N+VTW+ ++ G+ Q       L LF     L ++ N+FT+++V+
Sbjct: 262 GEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVL 321

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
             CA    L QG+ +H+++ K G+  N F    LVDMY+KCG  +DA  VF  I++ ++V
Sbjct: 322 KGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIV 381

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +W+ +I+   +  +S E + LF  M+     PN+ T  S+LSA ++ G ++ G+S     
Sbjct: 382 VWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS-IHAC 440

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           V ++    +V   + ++ +  + G +H+   L  +M  D     W + L+
Sbjct: 441 VWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLS 489



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 192/358 (53%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+ CA  +   +G+V H+ II  G   +      L++ YSKCGL   A  VF  +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  IV W+ +I      G+ +E++ LF +++R G T  +++T+ S+L A     ++   
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H    K   + +V V  AL+ +Y K G + D ++++ESM +R+ ++W++ ++G    
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +Y+  L +F      G   N +T  S++ +C+ L  +  G+QVHA + K     N F  
Sbjct: 495 GMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC 554

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKC  + DA   F+ +  +++  W  +I+ +++  +  + +  F +MQQ G+ 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           PNE T    LS CS +  +E G+    ++ K  +V  ++F  S ++D+  + G + EA
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV-SDMFVGSALVDMYAKCGCMEEA 671



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 196/364 (53%), Gaps = 3/364 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C+   A   GK  HA+   +GL  D    + L++ Y+KCG I  A K+F  M
Sbjct: 215 TLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGM 274

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++  V+WN ++  Y   G     + LF +M+ E     +EFT+++VL  CA  +++ + 
Sbjct: 275 PEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMM-ELDVKCNEFTLTTVLKGCANSKNLKQG 333

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H   +K   + N F+G  L+D+Y+KCGL  DA  VF+++ + + V WS+++    Q 
Sbjct: 334 QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQ 393

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EE++ LF   ++     NQ+TI S++ A      L  G+ +HA + K GF +++  +
Sbjct: 394 GQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVS 453

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV MY K GCV D   ++  + +++++ WN  +SG          + +F  M + G  
Sbjct: 454 NALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI 513

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+IS+L +CS +  V  G+     ++K + +  N F  + +ID+  +   + +A D
Sbjct: 514 PNMYTFISILGSCSCLFDVHYGRQVHAHIIK-NQLDDNNFVCTALIDMYAKCMYLEDA-D 571

Query: 395 LILN 398
           +  N
Sbjct: 572 VAFN 575



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L  C+   +   G+  H+ +   G  +D    + L++ Y+KCG +  A  +F+ +
Sbjct: 619 TLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL 678

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R  ++WNTII  Y  NG+  +A+  F  ML EG +P    T + +L AC+ +  V E 
Sbjct: 679 IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISP-DGVTFTGILSACSHQGLVEEG 737

Query: 155 KQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
           K+        F +   +D        ++D+  + G   +     + M   +N + W +++
Sbjct: 738 KEHFNSMYRDFGISPTVDH----CACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 209 A 209
            
Sbjct: 794 G 794


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/560 (40%), Positives = 343/560 (61%), Gaps = 10/560 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           V G+  H+ +I      +   SN L++FYSK   +  ARK+FDEMP++  VS+N II  Y
Sbjct: 227 VLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGY 286

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +G+ + A  LF   L+       +F  +++L   +   D    +Q+H   +    D  
Sbjct: 287 AWDGKHKYAFDLF-RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSE 345

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + VG +L+D+YAKCG   +A  +F ++  R+ V W++M++ +VQ   YEE L LF + + 
Sbjct: 346 ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQ 405

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             +  +Q T +S++ A A +A+L  GKQ+H+ + K+GF SN+F+ S+L+D+YAKCG + D
Sbjct: 406 ASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKD 465

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A   F  + ++N+V WN MIS ++++  +   +  F++M  +GL P+  +++ VLSACSH
Sbjct: 466 AVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSH 525

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+VE+G  +F+ M + + + P   HY+ ++D+L R+G  +EA  L+  MP D    MW 
Sbjct: 526 SGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWS 585

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
           S+L +CR ++N ELA  AA QLF ME   +A  ++ +SNIYAA  +WE V++  K +RD 
Sbjct: 586 SVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDR 645

Query: 469 EVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            VKK  + SWVEIK          R HP+I EI  K++ L + M++LGYKP+T   LH+ 
Sbjct: 646 GVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNE 705

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           ++  K E L +HSE+LA+ F L+    G PI +MKNLR C DCH+ +K  S+I GRE  V
Sbjct: 706 DEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITV 765

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD  RFHHF +G CSC DFW
Sbjct: 766 RDSTRFHHFRDGFCSCGDFW 785



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 175/344 (50%), Gaps = 10/344 (2%)

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           R IV  NT++ SY  + R   A  LF  M          FT ++VLCA     D+   +Q
Sbjct: 178 RLIVG-NTLVDSYCKSNRLDLACQLFKEM-----PEIDSFTFAAVLCANIGLDDIVLGQQ 231

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H F +K     NVFV  ALLD Y+K   + DA ++F+ MPE++ V+++ +++G+  +  
Sbjct: 232 IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGK 291

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           ++ A  LFR  Q    +  QF  ++++   +       G+Q+HA    T   S +   +S
Sbjct: 292 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 351

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           LVDMYAKCG   +A  +F+ +  ++ V W  MIS + +     E + LF KM+QA +  +
Sbjct: 352 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIAD 411

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + T+ S+L A + I  +  GK     ++K    + NVF  S ++D+  + G I +A    
Sbjct: 412 QATFASLLRASASIASLSLGKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTF 470

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ--LFGMEPDN 438
             MP D     W +++++       E    + K+  L G++PD+
Sbjct: 471 QEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDS 513



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 15/182 (8%)

Query: 37  QATLQSCARERAPVR----GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           QAT  S  R  A +     GK  H+ II  G  ++  + + L++ Y+KCG I  A + F 
Sbjct: 412 QATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQ 471

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EMP R IVSWN +I +Y  NG  +  +  F  M+  G  P S  +   VL AC+    V 
Sbjct: 472 EMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDS-VSFLGVLSACSHSGLVE 530

Query: 153 EC-----KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
           E          ++ L    +       +++D+  + G  ++A ++   MP + +E+ WSS
Sbjct: 531 EGLWHFNSMTQIYKLDPRREHYA----SVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSS 586

Query: 207 MV 208
           ++
Sbjct: 587 VL 588



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 46/232 (19%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +N      ++  Y K G + +A ++F+ M ER  VTW+ ++ G+ Q   ++EA  LF + 
Sbjct: 76  KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM 135

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q  G E +  T  +++  C G     Q  QV   + K G+ S +   ++LVD Y K   +
Sbjct: 136 QRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL 195

Query: 288 ------------VDAYFVFSGIEEKNVVL-------------------WNTMISG----- 311
                       +D+ F F+ +   N+ L                   WN  +S      
Sbjct: 196 DLACQLFKEMPEIDS-FTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDF 254

Query: 312 FSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           +S+H   ++   LF++M +Q G+     +Y  ++S  +  G   K K  FDL
Sbjct: 255 YSKHDSVIDARKLFDEMPEQDGV-----SYNVIISGYAWDG---KHKYAFDL 298


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 346/588 (58%), Gaps = 23/588 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+ + L +C+       GK  HA  +  G L+ ++   + L++ Y  C  +    +VFD 
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  R I  WN +I  Y  N  ++EA+ LFI M        +  T++ V+ AC       +
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H F +K  +DR+ FV  AL+D+Y++ G I  A R+F  M +R+ VTW++++ G+V 
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479

Query: 214 NELYEEALILFRRAQVL-----------GLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +E +E+AL++  + Q+L            L+ N  T+ +++ +CA L+AL +GK++HA  
Sbjct: 480 SERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 539

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K    +++   S+LVDMYAKCGC+  +  VF  I  +NV+ WN ++  +  H  S + +
Sbjct: 540 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAI 599

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            +   M   G+ PNE T+ISV +ACSH GMV +G   F  M K + V P+  HY+C++D+
Sbjct: 600 DMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDL 659

Query: 383 LGRAGLIHEAYDLILNMP--FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           LGRAG + EAY LI  +P  FD  A  W SLL +CR + NLE+ EIAA+ L  +EP+ A 
Sbjct: 660 LGRAGRVKEAYQLINLIPRNFD-KAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVAS 718

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAE 492
           +++LL+NIY++   W +    R+ ++   V+KE   SW+E        + G  +HP+  +
Sbjct: 719 HYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEK 778

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           +   LE L E M+K GY P+T   LH+VE+  K+ LL  HSEKLA+ FG++   PG  IR
Sbjct: 779 LRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIR 838

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + KNLR+C DCH   KF S++  RE I+RD+ RFHHF NG+CSC D+W
Sbjct: 839 VAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 200/382 (52%), Gaps = 10/382 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQ 96
           A L++ A  +    GK  HA +   G   D++T +N L+N Y KCG      KVFD + +
Sbjct: 98  ALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISE 157

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVFE 153
           R  VSWN++I S  +  + + A+  F  ML E   P S FT+ SV  AC+       +  
Sbjct: 158 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEP-SSFTLVSVALACSNFPMPEGLLM 216

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H + L+   + N F+   L+ +Y K G ++ +  +  S   R+ VTW+++++   Q
Sbjct: 217 GKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQ 275

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMF 272
           NE + EAL   R   + G+E + FTISSV+ AC+ L  L  GK++HA   K G    N F
Sbjct: 276 NEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 335

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-A 331
             S+LVDMY  C  V+    VF G+ ++ + LWN MI+G++++    E ++LF +M++ A
Sbjct: 336 VGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESA 395

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL  N  T   V+ AC   G   K ++    +VK+  +  + F  + ++D+  R G I  
Sbjct: 396 GLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKR-GLDRDRFVQNALMDMYSRLGKIDI 454

Query: 392 AYDLILNMPFDATASMWGSLLA 413
           A  +   M  D     W +++ 
Sbjct: 455 AKRIFGKME-DRDLVTWNTIIT 475



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 190/393 (48%), Gaps = 59/393 (15%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           SA   AN+T   T+   + +C R  A  + +  H  ++  GL+ D    N L++ YS+ G
Sbjct: 394 SAGLLANST---TMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLG 450

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML-----------REGKT 131
            I  A+++F +M  R +V+WNTII  Y  + R ++A+ +   M            R    
Sbjct: 451 KIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLK 510

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P S  T+ ++L +CAA   + + K++H +A+K  +  +V VG+AL+D+YAKCG +  + +
Sbjct: 511 PNS-ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 569

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+ +P RN +TW+ +V  +  +   ++A+ + R   V G++ N+ T  SV  AC+    
Sbjct: 570 VFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGM 629

Query: 252 LIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           + +G ++   + K  G   +    + +VD+  + G V +AY + + I             
Sbjct: 630 VNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRN---------- 679

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
                         F+K   AG       + S+L AC     +E G+      +   N++
Sbjct: 680 --------------FDK---AG------AWSSLLGACRIHNNLEIGE------IAAQNLI 710

Query: 371 ---PNVF-HYSCMIDILGRAGLIHEAYDLILNM 399
              PNV  HY  + +I   AGL ++A ++  NM
Sbjct: 711 QLEPNVASHYVLLANIYSSAGLWYKATEVRRNM 743



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 11/241 (4%)

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W  ++   V++ L  EA++ +    VLG++ + F   +++ A A L  +  GKQ+HA + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 264 KTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
           K G+G  ++  A++LV++Y KCG     Y VF  I E+N V WN++IS      +    +
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK---GKSYFDLMVKQHNVLPNVFHYSCM 379
             F  M    + P+  T +SV  ACS+  M E    GK      +++  +  N F  + +
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGEL--NSFIINTL 238

Query: 380 IDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLAS-CRNYRNLELAEIAAKQLF-GMEP 436
           + + G+ G +  A   +L   F+      W ++L+S C+N + LE  E   + +  G+EP
Sbjct: 239 VAMYGKMGKL--ASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296

Query: 437 D 437
           D
Sbjct: 297 D 297


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 342/572 (59%), Gaps = 11/572 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  CA+    + G + H  ++  GL++D   SN LIN YSK G +  A+ VFD+M
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN+II +Y  N     A+  F  M   G  P    TV S+    +   D    
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP-DLLTVVSLTSIFSQLSDQRIS 342

Query: 155 KQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           + +  F ++   +D++V +G AL+++YAK G ++ A  VF+ +P ++ ++W+++V G+ Q
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402

Query: 214 NELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N L  EA+  +    +      NQ T  S+I A + + AL QG ++HA L K     ++F
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVF 462

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A+ L+D+Y KCG + DA  +F  I     V WN +I+    H R  E + LF+ M    
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  +  T++S+LSACSH G+V++G+  FD+M K++ + P++ HY CM+D+LGRAG + +A
Sbjct: 523 VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKA 582

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y+L+ NMP    AS+WG+LL++C+ Y N EL  +A+ +L  ++ +N G ++LLSNIYA  
Sbjct: 583 YELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANT 642

Query: 453 RRWEEVARARKLIRDSEVKKEK--------SKSWVEIKGKRNHPRIAEIYSKLEKLVEEM 504
            +WE V + R L RD  ++K          SK+ V   G + HP+  EIY +L+ L  +M
Sbjct: 643 EKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKM 702

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K LGY P+      D+E+  K+++L  HSE+LA+ FG++   P  PIRI KNLR+CGDCH
Sbjct: 703 KSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCH 762

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           +  K+ SRI+ RE +VRD NRFHHF +G CSC
Sbjct: 763 NATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 212/416 (50%), Gaps = 21/416 (5%)

Query: 1   MKSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKII 60
           M SLL+   KFY      SA  S   +A+        A   SC    A    K  HA ++
Sbjct: 1   MLSLLKSVSKFY-----KSATTSLHKDAD------FNALFNSCVNVNAT---KKLHALLL 46

Query: 61  GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA-- 118
             G + + + S  LIN Y   G IS +R  FD + ++ I SWN+II +Y   G+  EA  
Sbjct: 47  VFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMN 106

Query: 119 -VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
            V    +M   G      +T   +L AC +   + + K++H    K   + +VFV  +L+
Sbjct: 107 CVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLV 163

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
            +Y++ G++  A +VF  MP ++  +W++M++GF QN     AL +  R +  G++ +  
Sbjct: 164 HLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTI 223

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T++S++  CA    +I G  +H  + K G  S++F +++L++MY+K G + DA  VF  +
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           E +++V WN++I+ + ++      +  F+ MQ  G+ P+  T +S+ S  S +      +
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           S    ++++  +  +V   + ++++  + G ++ A+ +   +P   T S W +L+ 
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTIS-WNTLVT 398



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           K++HA+L   G   N+  ++ L+++Y   G +  +   F  I +KN+  WN++IS + R 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 316 ARSVEVM----ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            +  E M     LF       L P+  T+  +L AC  + +V+  K +    V +     
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLVDGKKVH--CCVFKMGFED 154

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRN 417
           +VF  + ++ +  R G++  A+ + ++MP     S W ++++  C+N
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS-WNAMISGFCQN 200


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/560 (40%), Positives = 343/560 (61%), Gaps = 10/560 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           V G+  H+ +I      +   SN L++FYSK   +  ARK+FDEMP++  VS+N II  Y
Sbjct: 267 VLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGY 326

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +G+ + A  LF   L+       +F  +++L   +   D    +Q+H   +    D  
Sbjct: 327 AWDGKHKYAFDLF-RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSE 385

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + VG +L+D+YAKCG   +A  +F ++  R+ V W++M++ +VQ   YEE L LF + + 
Sbjct: 386 ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQ 445

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             +  +Q T +S++ A A +A+L  GKQ+H+ + K+GF SN+F+ S+L+D+YAKCG + D
Sbjct: 446 ASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKD 505

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A   F  + ++N+V WN MIS ++++  +   +  F++M  +GL P+  +++ VLSACSH
Sbjct: 506 AVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSH 565

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+VE+G  +F+ M + + + P   HY+ ++D+L R+G  +EA  L+  MP D    MW 
Sbjct: 566 SGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWS 625

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
           S+L +CR ++N ELA  AA QLF ME   +A  ++ +SNIYAA  +WE V++  K +RD 
Sbjct: 626 SVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDR 685

Query: 469 EVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            VKK  + SWVEIK          R HP+I EI  K++ L + M++LGYKP+T   LH+ 
Sbjct: 686 GVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNE 745

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           ++  K E L +HSE+LA+ F L+    G PI +MKNLR C DCH+ +K  S+I GRE  V
Sbjct: 746 DEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITV 805

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD  RFHHF +G CSC DFW
Sbjct: 806 RDSTRFHHFRDGFCSCGDFW 825



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 206/385 (53%), Gaps = 5/385 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
             +II +G ++  +  N L++ Y K   +  A ++F EMP+   VS+N +I  Y+ +G +
Sbjct: 172 QTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLD 231

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           ++AV LF+ M   G  P +EFT ++VLCA     D+   +Q+H F +K     NVFV  A
Sbjct: 232 EKAVNLFVEMQNSGLKP-TEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNA 290

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+K   + DA ++F+ MPE++ V+++ +++G+  +  ++ A  LFR  Q    +  
Sbjct: 291 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRK 350

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           QF  ++++   +       G+Q+HA    T   S +   +SLVDMYAKCG   +A  +F+
Sbjct: 351 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFT 410

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  ++ V W  MIS + +     E + LF KM+QA +  ++ T+ S+L A + I  +  
Sbjct: 411 NLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSL 470

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GK     ++K    + NVF  S ++D+  + G I +A      MP D     W +++++ 
Sbjct: 471 GKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAY 528

Query: 416 RNYRNLELAEIAAKQ--LFGMEPDN 438
                 E    + K+  L G++PD+
Sbjct: 529 AQNGEAEATLKSFKEMVLSGLQPDS 553



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 189/349 (54%), Gaps = 5/349 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +T+++N++I+ Y K G +  ARK+FD M +R  V+W  +IG Y+   + +EA  LF+ M 
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R G  P    T  ++L  C       +  Q+    +K   D  + VG  L+D Y K   +
Sbjct: 142 RCGTEP-DYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL 200

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A ++F+ MPE + V++++M+ G+ ++ L E+A+ LF   Q  GL+  +FT ++V+CA 
Sbjct: 201 DLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCAN 260

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
            GL  ++ G+Q+H+ + KT F  N+F +++L+D Y+K   V+DA  +F  + E++ V +N
Sbjct: 261 IGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYN 320

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS-YFDLMVK 365
            +ISG++   +      LF ++Q       +  + ++LS  S+    E G+  +   +V 
Sbjct: 321 VIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVT 380

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
             +    +   + ++D+  + G   EA  +  N+    +A  W +++++
Sbjct: 381 TAD--SEILVGNSLVDMYAKCGKFEEAEMIFTNLT-HRSAVPWTAMISA 426



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 15/182 (8%)

Query: 37  QATLQSCARERAPVR----GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           QAT  S  R  A +     GK  H+ II  G  ++  + + L++ Y+KCG I  A + F 
Sbjct: 452 QATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQ 511

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EMP R IVSWN +I +Y  NG  +  +  F  M+  G  P S  +   VL AC+    V 
Sbjct: 512 EMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDS-VSFLGVLSACSHSGLVE 570

Query: 153 EC-----KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
           E          ++ L    +       +++D+  + G  ++A ++   MP + +E+ WSS
Sbjct: 571 EGLWHFNSMTQIYKLDPRREHYA----SVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSS 626

Query: 207 MV 208
           ++
Sbjct: 627 VL 628


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 346/639 (54%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L SCA   A   G+  H  ++ +GL++    +N ++  Y KCG    AR VF+ M
Sbjct: 349 TLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERM 408

Query: 95  P-------------------------------QRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                           +R IVSWNTII  Y  NG +  A+  F 
Sbjct: 409 QVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFS 468

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM----------------- 166
            ML         FTV+SVL ACA  R +   KQ+H + L+  M                 
Sbjct: 469 RMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKS 528

Query: 167 ----------------DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                           D NV   TALL+ Y K G    A  +F+ M  R+ + W++M+ G
Sbjct: 529 GSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVG 588

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN   +EA+ LFR   ++G E N  T+++V+ ACA LA L  GKQ+H    ++    +
Sbjct: 589 YHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQS 648

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +  +++++ +YA+ G V  A  VF  I   K  + W +MI   ++H    + ++LFE+M 
Sbjct: 649 VSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV 708

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           + G+ P+  TY+ VLSAC+H G V+KGK Y++ M  +H ++P + HY+CM+D+  RAGL+
Sbjct: 709 RVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLL 768

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA++ I  MP      +WGSLLA+CR  +N +LAE+AA +L  ++P N+G +  L+N+Y
Sbjct: 769 TEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVY 828

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           +A  RW + AR  KL +D  VKKE   SW  ++GK +        HP+   IY K  ++ 
Sbjct: 829 SACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMW 888

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           EE+KK G+ P+    LHDV+D  K+ELL  HSEKLA+ FGL+       +RIMKNLR+C 
Sbjct: 889 EEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCN 948

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +KF S+   RE IVRD  RFHHF +G CSC D+W
Sbjct: 949 DCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 204/439 (46%), Gaps = 69/439 (15%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +  T N L++ Y+K G +  A  VF EMP R  VSW  +I     +GR  +AV  F++M+
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            EG  P S+FT+++VL +CAA       +++H F +K  +   V V  ++L +Y KCG  
Sbjct: 340 SEGFAP-SQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 187 SDASRV-------------------------------FESMPERNEVTWSSMVAGFVQNE 215
             A  V                               FE+M ER+ V+W++++AG+ QN 
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNG 458

Query: 216 LYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF------- 267
           L   AL  F R      +E + FT++SV+ ACA L  L  GKQ+H+ + +TG        
Sbjct: 459 LDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIM 518

Query: 268 ----------GS----------------NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
                     GS                N+ + ++L++ Y K G    A  +F  +  ++
Sbjct: 519 NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRD 578

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           V+ W  MI G+ ++ ++ E M LF  M   G  PN  T  +VLSAC+ +  ++ GK    
Sbjct: 579 VIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHC 638

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
             ++      +V   + +I +  R+G +  A  +   + +      W S++ +   +   
Sbjct: 639 KAIRSLQE-QSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLG 697

Query: 422 ELAEIAAKQL--FGMEPDN 438
           E A +  +++   G++PD+
Sbjct: 698 EQAVVLFEEMVRVGVKPDH 716



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 164/322 (50%), Gaps = 37/322 (11%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG-- 82
           SA++   +  T+ + L +CA  R    GK  H+ I+  G+   +   N LI+ Y+K G  
Sbjct: 472 SASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSV 531

Query: 83  ----------------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTT 111
                                 L+ G         AR++FD M  R +++W  +I  Y  
Sbjct: 532 ETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQ 591

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG+  EA+ LF +M+  G  P S  T+++VL ACA+   +   KQ+H  A+++  +++V 
Sbjct: 592 NGQNDEAMELFRSMILIGPEPNSH-TLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVS 650

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNE-VTWSSMVAGFVQNELYEEALILFRRAQVL 230
           V  A++ VYA+ G +  A RVF+ +  R E +TW+SM+    Q+ L E+A++LF     +
Sbjct: 651 VSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRV 710

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVL-CKTGFGSNMFAASSLVDMYAKCGCVVD 289
           G++ +  T   V+ ACA    + +GK+ +  +  + G    M   + +VD++A+ G + +
Sbjct: 711 GVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTE 770

Query: 290 AY-FVFSGIEEKNVVLWNTMIS 310
           A+ F+       + V+W ++++
Sbjct: 771 AHEFIQRMPVAPDTVVWGSLLA 792



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 32/230 (13%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RN F   +LL +YAK G + DA  VF  MP+R+ V+W+ M+ G  ++  + +A+  F   
Sbjct: 279 RNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDM 338

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
              G   +QFT+++V+ +CA + A   G++VH  + K G  S +  A+S++ MY KCG  
Sbjct: 339 VSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 288 VDAYFVFSGIE-------------------------------EKNVVLWNTMISGFSRHA 316
             A  VF  ++                               E+++V WNT+I+G++++ 
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNG 458

Query: 317 RSVEVMILFEKMQQA-GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
                +  F +M  A  + P+  T  SVLSAC+++ M++ GK     +++
Sbjct: 459 LDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILR 508


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 343/579 (59%), Gaps = 39/579 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L  CA +R   +G+  HA +I   +  + +    L++ YS+CG ++ A+++F+ M
Sbjct: 280 TFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 339

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R   SWN++I  Y  NG  QEA+ LF  M   G  P   F++SS+L +C +  D  + 
Sbjct: 340 AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC-FSLSSMLSSCVSLSDSQKG 398

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM--PERNEVTWSSMVAGFV 212
           ++LH F ++  M+    +   L+D+YAKCG +  A +V++     +RN   W+S++AG+ 
Sbjct: 399 RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYA 458

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
              L +E+   F       +EY+  T+ +++                         + + 
Sbjct: 459 NKGLKKESFNHFLEMLESDIEYDVLTMVTIV-------------------------NLLV 493

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++LVDMY+KCG +  A  VF  +  KN+V WN MISG+S+H  S E +IL+E+M + G
Sbjct: 494 LETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKG 553

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           ++PNE T++++LSACSH G+VE+G   F  M + +N+     HY+CM+D+LGRAG + +A
Sbjct: 554 MYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDA 613

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            + +  MP +   S WG+LL +CR ++++++  +AA++LF ++P N G ++++SNIYAA 
Sbjct: 614 KEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAA 673

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            RW+EV   R++++   VKK+   SW+EI         G + HP+  EIY+ L  L  + 
Sbjct: 674 GRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQS 733

Query: 505 KKLGYKPETEHDLHDVEDSR---KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           K LGY P+T   L +V+D +   ++E L+ HSE+LAL+ GL+ L     IR+ KNLRICG
Sbjct: 734 KGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICG 793

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+  KF S+I GR  I RD NRFHHF NG CSC D+W
Sbjct: 794 DCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/408 (30%), Positives = 213/408 (52%), Gaps = 15/408 (3%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF 77
           +S     +++ N    S+L   +Q C    +  RGK  H ++I  G N D      ++  
Sbjct: 59  TSIHTKPASDVNPLPYSSL---IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILML 115

Query: 78  YSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
           Y++ G +     ARK+F+EMP+R + +WNT+I +Y       EA  +F  ML+ G  P  
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCP-D 174

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
            FT +S L  C A R     KQ+H   +      + FVG AL+D+YAKC       +VF+
Sbjct: 175 NFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFD 234

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL--GLEYNQFTISSVICACAGLAAL 252
            M ERN+VTW+S+++   Q   + +AL+LF R Q    G++ +QFT ++++  CA     
Sbjct: 235 EMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRND 294

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            QG+Q+HA L +     N+   + LV MY++CG +  A  +F+ + E+N   WN+MI G+
Sbjct: 295 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 354

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
            ++  + E + LF++MQ  G+ P+  +  S+LS+C  +   +KG+   + +V+       
Sbjct: 355 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 414

Query: 373 VFHYSCMIDILGRAGLIHEA---YDLILNMPFDATASMWGSLLASCRN 417
           +     ++D+  + G +  A   YD  +    D   ++W S+LA   N
Sbjct: 415 ILQV-VLVDMYAKCGSMDYAWKVYDQTIKK--DRNTALWNSILAGYAN 459



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 158/308 (51%), Gaps = 13/308 (4%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD---ASRVFES 195
           SS++  C         K +H   +    + + ++ T +L +YA+ G + D   A ++FE 
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEE 134

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MPERN   W++M+  + + + Y EA  +F R   +G+  + FT +S +  C  L +   G
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 194

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           KQVH+ L   GF  + F  ++L+DMYAKC        VF  + E+N V WN++IS  ++ 
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQF 254

Query: 316 ARSVEVMILFEKMQQA--GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
               + ++LF +MQ++  G+ P++ T+ ++L+ C++     +G+     +++  N+  N+
Sbjct: 255 GHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNI 313

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE----IAAK 429
              + ++ +    G ++ A + I N   +  A  W S++   +  +N E  E        
Sbjct: 314 IVETELVHMYSECGRLNYAKE-IFNRMAERNAYSWNSMIEGYQ--QNGETQEALRLFKQM 370

Query: 430 QLFGMEPD 437
           QL G++PD
Sbjct: 371 QLNGIKPD 378


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/639 (35%), Positives = 347/639 (54%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           TL   L SCA  +A   G+  H+ ++ +GL +    +N ++N Y KCG            
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 83  -------------------LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                               +  A  +F+ MP R IVSWN +I  Y  NG + +A+ LF 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            ML E      EFT++SVL ACA   +V   KQ+H + L+  M  N  V  AL+  YAK 
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 184 GLISDASRV---------------------------------FESMPERNEVTWSSMVAG 210
           G + +A R+                                 F  M  R+ V W++M+ G
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 299

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN   +EA+ LFR     G E N +T+++V+  CA LA L  GKQ+H    ++    +
Sbjct: 300 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS 359

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
              +++++ MYA+ G    A  +F  +   K  + W +MI   ++H +  E + LFE+M 
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           +AG+ P+  TY+ VLSACSH G V +GK Y+D +  +H + P + HY+CM+D+L RAGL 
Sbjct: 420 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 479

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP +  A  WGSLL++CR ++N ELAE+AA++L  ++P+N+G +  ++N+Y
Sbjct: 480 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 539

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           +A  RW + AR  K  ++  V+KE   SW  I+ K +        HP+   +Y+   ++ 
Sbjct: 540 SACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 599

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           EE+K  G+ P+ +  LHDV+D  K+ELL  HSEKLA+ FGL+       +R+MKNLR+C 
Sbjct: 600 EEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCN 659

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +K  S++  RE IVRD  RFHHF +G CSC D+W
Sbjct: 660 DCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 199/432 (46%), Gaps = 77/432 (17%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            ++K G ++ AR VF EMP+R  VSW  ++      GR  EA+   ++M  +G TP ++F
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP-TQF 59

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV---- 192
           T+++VL +CA  +     +++H F +K  +   V V  ++L++Y KCG    A+ V    
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 193 ---------------------------FESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
                                      FESMP+R+ V+W++M+AG+ QN L  +AL LF 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 226 RA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           R      +  ++FTI+SV+ ACA L  +  GKQVHA + +T    N    ++L+  YAK 
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 285 GCVVDAYFV---------------------------------FSGIEEKNVVLWNTMISG 311
           G V +A  +                                 F  +  ++VV W  MI G
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 299

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY----FDLMVKQH 367
           + ++ R+ E + LF  M   G  PN  T  +VLS C+ +  ++ GK         +++Q 
Sbjct: 300 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS 359

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
           + + N      +I +  R+G    A  +   + +      W S++ +   +   E A   
Sbjct: 360 SSVSN-----AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGL 414

Query: 428 AKQLF--GMEPD 437
            +++   G+EPD
Sbjct: 415 FEEMLRAGVEPD 426


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/574 (38%), Positives = 345/574 (60%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L + +  R    GK  H   +  G ++    +  L++ Y+KCG +  AR +FD M
Sbjct: 238 TIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM 297

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSWN++I +Y  N   +EA+ +F  ML EG  P ++ +V   L ACA   D+   
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKP-TDVSVMGALHACADLGDLERG 356

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H  +++  +DRNV V  +L+ +Y KC  +  A+ +F  +  R  V+W++M+ GF QN
Sbjct: 357 RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQN 416

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL  F + Q   ++ + FT  SVI A A L+     K +H V+ +     N+F  
Sbjct: 417 GRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVT 476

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG ++ A  +F  + E++V  WN MI G+  H      + LFE+MQ+  + 
Sbjct: 477 TALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIR 536

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T++SV+SACSH G+VE G   F +M + +++ P++ HY  M+D+LGRAG ++EA+D
Sbjct: 537 PNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWD 596

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I+ MP     +++G++L +C+ ++N+  AE  A++LF + P++ G H+LL+NIY A   
Sbjct: 597 FIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASM 656

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WE+V + R  +    ++K    S VEIK        G   HP   +IY+ LEKL+ ++K+
Sbjct: 657 WEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKE 716

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+T   L  +ED  K++LL  HSEKLA++FGL+    G  I + KNLR+C DCH+ 
Sbjct: 717 AGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNA 775

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S + GRE IVRD+ RFHHF NG+CSC D+W
Sbjct: 776 TKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 211/373 (56%), Gaps = 3/373 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C  E     GK  H  ++  G + D      L N Y+KC  +  ARKVFD MP+R +
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDL 201

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWNTI+  Y+ NG  + A+ + +N++ E     S  T+ SVL A +A R +   K++H 
Sbjct: 202 VSWNTIVAGYSQNGMARMALEM-VNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHG 260

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +A++A  D  V + TAL+D+YAKCG +  A  +F+ M ERN V+W+SM+  +VQNE  +E
Sbjct: 261 YAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKE 320

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+++F++    G++    ++   + ACA L  L +G+ +H +  +     N+   +SL+ 
Sbjct: 321 AMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLIS 380

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY KC  V  A  +F  ++ + +V WN MI GF+++ R +E +  F +MQ   + P+  T
Sbjct: 381 MYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFT 440

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           Y+SV++A + + +    K +   +V ++ +  NVF  + ++D+  + G I  A  LI +M
Sbjct: 441 YVSVITAIAELSITHHAK-WIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDM 498

Query: 400 PFDATASMWGSLL 412
             +   + W +++
Sbjct: 499 MSERHVTTWNAMI 511



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 169/303 (55%), Gaps = 1/303 (0%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           GL  + L    L++ + + G +  A +VF+ + ++  V + T++  +       +A+  F
Sbjct: 64  GLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFF 123

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           + M R+ +     +  + +L  C  + ++   K++H   +K+    ++F  T L ++YAK
Sbjct: 124 VRM-RDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAK 182

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           C  + +A +VF+ MPER+ V+W+++VAG+ QN +   AL +        L+ +  TI SV
Sbjct: 183 CRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSV 242

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + A + L  +  GK++H    + GF S +  A++LVDMYAKCG +  A  +F G+ E+NV
Sbjct: 243 LPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNV 302

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WN+MI  + ++    E M++F+KM   G+ P + + +  L AC+ +G +E+G+    L
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 363 MVK 365
            V+
Sbjct: 363 SVE 365



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L  L   + +  ++ K G        + LV ++ + G V +A  VF  I++K  VL+
Sbjct: 47  CSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLY 103

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            TM+ GF++ +   + +  F +M+   + P    +  +L  C     +  GK    L+VK
Sbjct: 104 YTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
               L ++F  + + ++  +   +HEA  +   MP     S W +++A
Sbjct: 164 SGFSL-DLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVS-WNTIVA 209


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/595 (38%), Positives = 339/595 (56%), Gaps = 46/595 (7%)

Query: 48  APVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKVFDEMPQRCIVSWNT 104
           +P   K  HA ++     N  L+S  L    S C      S A+ +F  +    +  WNT
Sbjct: 27  SPFELKQLHAHLLK---TNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNT 83

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
            + S+       +A++LF   LRE       +T S VL AC+   DV   K +H +  K 
Sbjct: 84  CLRSFAEGDSPADAISLFYR-LREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKL 142

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW-------------------- 204
            +  N+F+   ++ +YA CG I  A +VF+ MP+R+ +TW                    
Sbjct: 143 GLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLF 202

Query: 205 -----------SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
                      +SM+ G+ Q    +EA+ LF   +  GL  N+ T+ +V+ ACA +  L+
Sbjct: 203 AEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLV 262

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G+++H    ++G+  N+   ++L+DMY KCGC+ DA  +F  +EE+ VV W+ MI+G +
Sbjct: 263 LGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLA 322

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H R+ + + LF KM   G+ PN  T+I +L ACSH+GMVEKG+ YF  M + + ++P +
Sbjct: 323 AHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRI 382

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY CM+D+  RAGL+ EA++ I+NMP      +WG+LL  C+ ++N++LAE A + L  
Sbjct: 383 EHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSK 442

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKR 485
           ++P N G +++LSNIYA   RWE+VAR RKL+RD  VKK    S + ++        G  
Sbjct: 443 LDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDD 502

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
            HP+  EI+   EKL++ MK  GY P T   L D+E+ +K++ L  HSEKLA+ FGL+  
Sbjct: 503 THPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKT 562

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG  IRIMKNLR+C DCH+ +K  S ++ RE +VRD NRFH F NGSCSC D+W
Sbjct: 563 TPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 165/314 (52%), Gaps = 34/314 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+R      GK+ H  +  +GL ++    N++++ Y+ CG I  ARKVFD+M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174

Query: 95  PQRCIVSWN-------------------------------TIIGSYTTNGREQEAVALFI 123
           PQR +++WN                               ++IG Y   G+ +EA+ LF+
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M   G  P +E TV +VL ACA   ++   +++H F+ ++  ++N+ V   L+D+Y KC
Sbjct: 235 EMEDAGLLP-NEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC 293

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA R+F++M ER  V+WS+M+AG   +   E+AL LF +    G++ N  T   ++
Sbjct: 294 GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353

Query: 244 CACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKN 301
            AC+ +  + +G++  A + +  G    +     +VD++++ G + +A+ F+ +     N
Sbjct: 354 HACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPN 413

Query: 302 VVLWNTMISGFSRH 315
            V+W  ++ G   H
Sbjct: 414 GVVWGALLGGCKVH 427


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/545 (40%), Positives = 335/545 (61%), Gaps = 21/545 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           DT++ N L++ +  CG I GAR+VF  MP + + SWNT++   + NG  +EA A+F  M 
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 127 REGKTPYSEFTVSSVLCA--CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
                 ++   V+++ C+    A  D+F           A    +  + TA++  Y   G
Sbjct: 136 VRNAVSWNAM-VAALACSGDMGAAEDLFR---------NAPEKTDAILWTAMVSGYMDTG 185

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVI 243
            +  A   F +MP RN V+W+++VAG+V+N   ++AL +F+   +   ++ N  T+SSV+
Sbjct: 186 NVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVL 245

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
             C+ L+AL  G+QVH    K     N+   +SL+ MY KCG + DA  VF  +  K++V
Sbjct: 246 LGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIV 305

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN MISG+++H   ++ + LFEKM+  G+ P+  T ++VL+AC H G+ + G   F+ M
Sbjct: 306 AWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETM 365

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
            + + + P + HYSCM+D+L RAGL+  A ++I +MPF+   S +G+LL +CR Y+NLE 
Sbjct: 366 QEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEF 425

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
           AE AA++L   +P NAG ++ L+NIYA   +W +V+R R+ ++D+ V K    SW+EIKG
Sbjct: 426 AEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKG 485

Query: 484 KRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
            R+        HP++  I+ KL++L   MK +GY P+ +  LHDVEDS K ++L+ HSEK
Sbjct: 486 VRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEK 545

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   PG+ +RI KNLRICGDCH+  K  S+I  RE I+RD  RFHHF  G CS
Sbjct: 546 LAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCS 605

Query: 596 CWDFW 600
           C D+W
Sbjct: 606 CGDYW 610



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL + L  C+   A   G+  H   + + L+ +      L++ Y KCG ++ A KVFDE
Sbjct: 239 STLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDE 298

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR---- 149
           M  + IV+WN +I  Y  +G   +A+ LF  M  EG  P    T+ +VL AC        
Sbjct: 299 MSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVP-DWITLLAVLTACIHTGLCDF 357

Query: 150 --DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
               FE  Q   + ++  +D      + ++D+  + GL+  A  +  SMP
Sbjct: 358 GIQCFETMQ-EAYKIEPQIDHY----SCMVDLLCRAGLLERAVNMIHSMP 402


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/587 (38%), Positives = 342/587 (58%), Gaps = 9/587 (1%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           AS    A   +  T    L++CAR      G + H+ +   G + D      ++ FYSKC
Sbjct: 93  ASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKC 152

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G +  A KVFD+M  + +VSW  +I      G+ +EAV LF  +L  G  P   F +  V
Sbjct: 153 GFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRP-DGFVIVRV 211

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L ACA   D+   + +     +  + RNVFV T+L+D+Y KCG + +A  VF+ M E++ 
Sbjct: 212 LRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDI 271

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V WS+M+ G+  N L  EA+ LF   + + +  + + +   + +CA L AL  G     +
Sbjct: 272 VCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGL 331

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           +    F SN    +SL+D YAKCG + +A  V+  ++EK+ V++N +ISG + + +    
Sbjct: 332 MNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAA 391

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
             +F +M + G+ PNE T++ +L  C+H G+V+ G+ YF+ M    +V P + HY CM+D
Sbjct: 392 FGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVD 451

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +L RAG + EA++LI  MP  A   +WGSLL  CR +R  +LAE   KQL  +EP N+G+
Sbjct: 452 LLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGH 511

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEI 493
           ++LLSNIY+A+RRW+E  + R  + +  ++K    SWVE+         G  +HP   +I
Sbjct: 512 YVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKI 571

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           Y KLE L +++K+ GY P TE  L DVE+  K+  L  HSEKLA+ F L+       IR+
Sbjct: 572 YEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRV 631

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KNLR+CGDCH  +K  S++ GRE ++RD NRFH F++G+CSC D+W
Sbjct: 632 VKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 108/202 (53%), Gaps = 2/202 (0%)

Query: 192 VFESMPER-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
           VF   P   N   +++M+ G V  + +  A+ L+       +  + FT S V+ ACA L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
               G  +H+++ KTGF  ++F  +++V  Y+KCG + DA+ VF  +  KNVV W  MI 
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMIC 178

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           G     +  E + LF  + ++GL P+    + VL AC+ +G +E G+ + D  +++  + 
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGR-WIDRCMRECGLS 237

Query: 371 PNVFHYSCMIDILGRAGLIHEA 392
            NVF  + ++D+  + G + EA
Sbjct: 238 RNVFVATSLVDMYTKCGSMEEA 259


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/556 (41%), Positives = 327/556 (58%), Gaps = 44/556 (7%)

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           R VF ++       W  +I  Y   G   E+V L+ +M R+G  P S FT +++L AC+A
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVS-FTFTALLKACSA 151

Query: 148 KRDVFECKQLHVFA-LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM---------- 196
             DV   +Q+H    L      +++VG  L+D+Y KCG +    RVF+ M          
Sbjct: 152 ALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTS 211

Query: 197 ---------------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
                                P ++ V W++MV G+ QN    EAL +F R Q  G++ +
Sbjct: 212 LIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTD 271

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFG--SNMFAASSLVDMYAKCGCVVDAYFV 293
           + T+  VI ACA L A      V  V  ++GFG  SN+   S+L+DMYAKCG V DAY V
Sbjct: 272 EVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKV 331

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +EE+NV  +++MI GF+ H  +   M LF++M +  + PN  T+I VL+ACSH GMV
Sbjct: 332 FERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMV 391

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           E+G+  F +M + H V P+  HY+CM+D+LGRAG + EA +L+  MP +    +WG+LL 
Sbjct: 392 EQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLG 451

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
           +CR + N ++A+IAA  LF +EP+  GN++LLSNIYA+  RW++V++ RKL+R   +KK 
Sbjct: 452 ACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKN 511

Query: 474 KSKSWVEIK---------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
              SWVE K         G  +HP+  EI   LE L++ +K LGY+P      +D+ D  
Sbjct: 512 PGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEE 571

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K+ LL+ HSEKLAL FGL+    G  IRI+KNLRIC DCHS M  AS+I GRE +VRD  
Sbjct: 572 KKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNM 631

Query: 585 RFHHFTNGSCSCWDFW 600
           RFHHF +G CSC +FW
Sbjct: 632 RFHHFRDGRCSCGNFW 647



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 146/301 (48%), Gaps = 40/301 (13%)

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA--SRV 192
           E  + SVL  C     + + KQ+H    +  +++  FV   LL    K  +  D     V
Sbjct: 39  ESRLVSVLHGCT---HINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLV 95

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ +   N   W++++ G+     + E+++L+   +  G+    FT ++++ AC+    +
Sbjct: 96  FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155

Query: 253 IQGKQVHA-VLCKTGFGSNMFAASSLVDMYAKCGC---------------------VVDA 290
             G+QVH   +   GFGS+++  ++L+DMY KCGC                     ++ A
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215

Query: 291 YF----------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y           +F G+  K++V W  M++G++++AR  E + +FE+MQ AG+  +E T 
Sbjct: 216 YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTL 275

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILGRAGLIHEAYDLILN 398
           + V+SAC+ +G  +      D+  +Q    P  NV   S +ID+  + G + +AY +   
Sbjct: 276 VGVISACAQLGAAKYANWVRDV-AEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334

Query: 399 M 399
           M
Sbjct: 335 M 335



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 133/293 (45%), Gaps = 50/293 (17%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  A L++C+       G+  H + I +G   +D    N LI+ Y KCG +    +VFDE
Sbjct: 141 TFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDE 200

Query: 94  M-------------------------------PQRCIVSWNTIIGSYTTNGREQEAVALF 122
           M                               P + +V+W  ++  Y  N R +EA+ +F
Sbjct: 201 MLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVF 260

Query: 123 INMLREGKTPYSEFTVSSVLCAC----AAK-----RDVFECKQLHVFALKAAMDRNVFVG 173
             M   G     E T+  V+ AC    AAK     RDV E               NV VG
Sbjct: 261 ERMQAAG-VKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGF-------GPTSNVVVG 312

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           +AL+D+YAKCG + DA +VFE M ERN  ++SSM+ GF  + L   A+ LF       ++
Sbjct: 313 SALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIK 372

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCG 285
            N+ T   V+ AC+    + QG+Q+ A++ +  G   +    + +VD+  + G
Sbjct: 373 PNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAG 425


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/595 (39%), Positives = 348/595 (58%), Gaps = 24/595 (4%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKI------IGMGLNNDTLTSNIL 74
           IA+A   A+   L  L   ++ C R      G+  H  +       G   +     SN L
Sbjct: 57  IAAAGVRADPVSLCRL---IKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGSLFVSNSL 113

Query: 75  INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT-TNGREQEAVALFINMLREGKTPY 133
           ++ Y+K G++  A ++F  MPQR +VSW T++ +     GR++EA+   + M R+G    
Sbjct: 114 VSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAAN 173

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           S +T SSVL AC     +     +H   +K  +D +VFV ++L+D Y K G +     VF
Sbjct: 174 S-YTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVF 229

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + M   + V W+S++AGF Q+     A+ LF R +  G   NQ T++SV+ AC G+  L 
Sbjct: 230 DEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLE 289

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G+QVHA + K  +  ++   ++L+DMY KCGC++DA  +FS + +++V+ W+TMISG +
Sbjct: 290 VGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLA 347

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           ++ RSVE + +F+ M+  G  PN  T + VL ACSH G+VE G  YF  M K   + P  
Sbjct: 348 QNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPER 407

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            H +CM+D+LGRAG + EA   I  M F+  + +W +LL +CR ++N  LA  AA ++  
Sbjct: 408 EHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILK 467

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKR 485
           +EP++ G  +LLSNIYA  R+W    ++ K +RD  VKKE  +SW+E        I G+ 
Sbjct: 468 LEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGEL 527

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
           +HP    I  +L +L+   K LGY P+TE  L D+   +K++LL +HSEKLA+ FG M  
Sbjct: 528 SHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNS 587

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             G P+RIMKNLRICGDCH+F K  S+  G+  I+RD  RFHHF +G CSC D+W
Sbjct: 588 MEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/639 (35%), Positives = 347/639 (54%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           TL   L SCA  +A   G+  H+ ++ +GL +    +N ++N Y KCG            
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 225

Query: 83  -------------------LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                               +  A  +F+ MP R IVSWN +I  Y  NG + +A+ LF 
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            ML E      EFT++SVL ACA   +V   KQ+H + L+  M  N  V  AL+  YAK 
Sbjct: 286 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 345

Query: 184 GLISDASRV---------------------------------FESMPERNEVTWSSMVAG 210
           G + +A R+                                 F  M  R+ V W++M+ G
Sbjct: 346 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 405

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN   +EA+ LFR     G E N +T+++V+  CA LA L  GKQ+H    ++    +
Sbjct: 406 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS 465

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
              +++++ MYA+ G    A  +F  +   K  + W +MI   ++H +  E + LFE+M 
Sbjct: 466 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 525

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           +AG+ P+  TY+ VLSACSH G V +GK Y+D +  +H + P + HY+CM+D+L RAGL 
Sbjct: 526 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 585

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP +  A  WGSLL++CR ++N ELAE+AA++L  ++P+N+G +  ++N+Y
Sbjct: 586 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 645

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           +A  RW + AR  K  ++  V+KE   SW  I+ K +        HP+   +Y+   ++ 
Sbjct: 646 SACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 705

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           EE+K  G+ P+ +  LHDV+D  K+ELL  HSEKLA+ FGL+       +R+MKNLR+C 
Sbjct: 706 EEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCN 765

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +K  S++  RE IVRD  RFHHF +G CSC D+W
Sbjct: 766 DCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 205/442 (46%), Gaps = 77/442 (17%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +  T N L++ ++K G ++ AR VF EMP+R  VSW  ++      GR  EA+   ++M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +G TP ++FT+++VL +CA  +     +++H F +K  +   V V  ++L++Y KCG  
Sbjct: 157 ADGFTP-TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDS 215

Query: 187 SDASRV-------------------------------FESMPERNEVTWSSMVAGFVQNE 215
             A+ V                               FESMP+R+ V+W++M+AG+ QN 
Sbjct: 216 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275

Query: 216 LYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           L  +AL LF R      +  ++FTI+SV+ ACA L  +  GKQVHA + +T    N    
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 335

Query: 275 SSLVDMYAKCGCVVDAYFV---------------------------------FSGIEEKN 301
           ++L+  YAK G V +A  +                                 F  +  ++
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY-- 359
           VV W  MI G+ ++ R+ E + LF  M   G  PN  T  +VLS C+ +  ++ GK    
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 360 --FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
                +++Q + + N      +I +  R+G    A  +   + +      W S++ +   
Sbjct: 456 RAIRSLLEQSSSVSN-----AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQ 510

Query: 418 YRNLELAEIAAKQLF--GMEPD 437
           +   E A    +++   G+EPD
Sbjct: 511 HGQGEEAVGLFEEMLRAGVEPD 532



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 149/300 (49%), Gaps = 38/300 (12%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RNVF   +LL ++AK G ++DA  VF  MPER+ V+W+ MV G  +   + EA+      
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
              G    QFT+++V+ +CA   A   G++VH+ + K G GS +  A+S+++MY KCG  
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDS 215

Query: 288 VDAYFV-------------------------------FSGIEEKNVVLWNTMISGFSRHA 316
             A  V                               F  + ++++V WN MI+G++++ 
Sbjct: 216 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275

Query: 317 RSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
              + + LF +M  ++ + P+E T  SVLSAC+++G V  GK     +++   +  N   
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE-MAYNSQV 334

Query: 376 YSCMIDILGRAGLIHEAYDLI-LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
            + +I    ++G +  A  ++  +M  D     + +LL       ++E    +A+++FG+
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME----SAREMFGV 390


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/612 (37%), Positives = 356/612 (58%), Gaps = 44/612 (7%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++    A  ++CA     +R K  H      G+ +D    N LI+ Y KC  + GAR+VF
Sbjct: 163 DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D++  R +VSW ++   Y   G  ++ + +F  M   G  P +  TVSS+L ACA  +D+
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKP-NPMTVSSILPACAELKDL 281

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN----------- 200
              K++H FA++  M  N+FV +AL+ +YAKC  + +A  VF+ MP R+           
Sbjct: 282 KSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAY 341

Query: 201 ------------------------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
                                   E TW++++ G ++N   EEA+ +FR+ Q +G + N+
Sbjct: 342 FKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNE 401

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            TISS++ AC+    L  GK++H  + +     ++ + ++L+ MYAKCG +  +  VF  
Sbjct: 402 ITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDM 461

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           +  K+VV WNTMI   + H    E + LF+KM  + + PN  T+  VLS CSH  +VE+G
Sbjct: 462 MRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEG 521

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
              F+ M + H V P+  HYSC++DI  RAG ++EAY  I  MP + TAS WG+LLA+CR
Sbjct: 522 VQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACR 581

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
            Y+N+ELA+I+AK+LF +EP+N GN++ L NI    + W E ++ R L+++  + K    
Sbjct: 582 VYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGC 641

Query: 477 SWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
           SW+++         G +++    +IY+ L++LVE+MK  GYKP+T++ L D++   K E 
Sbjct: 642 SWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAES 701

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHH 588
           L +HSEKLA+ FG++ L     IR+ KNLRICGDCH+ +K+ S++ G   +VRD  RFHH
Sbjct: 702 LCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHH 761

Query: 589 FTNGSCSCWDFW 600
           F NG+CSC D W
Sbjct: 762 FKNGNCSCKDLW 773



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 155/292 (53%), Gaps = 1/292 (0%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           LI      G  + AR++FD +PQ    + +T+I + TT+G   EA+ ++ ++   G  P 
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
               +++   ACA   D    K++H  A +  +  +VFVG AL+  Y KC  +  A RVF
Sbjct: 164 MPVFLAAAK-ACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + +  R+ V+W+S+ + +V+     + + +FR     G++ N  T+SS++ ACA L  L 
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 282

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            GK++H    + G   N+F  S+LV +YAKC  V +A  VF  +  ++VV WN +++ + 
Sbjct: 283 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           ++    +   LF KM + G+  +E T+ +V+  C   G  E+    F  M K
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 394



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 122/246 (49%), Gaps = 1/246 (0%)

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G  L+ V    G  + A ++F+++P+ +  T S++++    + L  EA+ ++   Q  G
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ +     +   ACA     ++ K+VH    + G  S++F  ++L+  Y KC CV  A 
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 219

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  +  ++VV W ++ S + +     + M +F +M  +G+ PN  T  S+L AC+ + 
Sbjct: 220 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 279

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            ++ GK      V+ H ++ N+F  S ++ +  +   + EA  +   MP     S  G L
Sbjct: 280 DLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 338

Query: 412 LASCRN 417
            A  +N
Sbjct: 339 TAYFKN 344


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/584 (39%), Positives = 344/584 (58%), Gaps = 20/584 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-----LNNDTLTSNILINFYSKCGLISGARK 89
           TL   L + +  RA  +G+  H  ++  G      ++  L ++ L+ FY++C L   + +
Sbjct: 17  TLAELLVALSAARALPKGQQLHGHLLKGGHLPAVASSHALLAHHLLTFYARCSLPELSLR 76

Query: 90  VFDEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-- 146
            F ++P      +W+++I S+  NG    A   F  ML  G  P ++ ++     A A  
Sbjct: 77  AFLDLPASPSPAAWSSLISSFAQNGLPAAAFDAFRRMLAAG-VPATDRSIPPAAKAVAAA 135

Query: 147 --AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
             + R       LH  A K     +VFVG+A+LD+YAKCG +SDA RVF+ MPERN V+W
Sbjct: 136 ADSSRPPLAPHALHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSW 195

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           S+++ G+    ++  AL +FR A    ++ N FT+S ++  CA       G QVHA   K
Sbjct: 196 SALIGGYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQVHARSIK 255

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           T   ++ F  SSLV +Y+KCG V  AY VFS   E+N+ +WN ++   ++H  +      
Sbjct: 256 TALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQHGHTSTAFER 315

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F KMQ AG  PN  T++ +L+ACSH G+V++GK YF LM K++ + P V HY+ M+D+LG
Sbjct: 316 FTKMQHAGFRPNFITFLCLLTACSHAGLVDEGKRYFSLM-KEYRIEPEVEHYAAMVDLLG 374

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           R G I EA DLI +MP +   S+WG+LL +CR +++ + A IAAK+LF     ++G H+L
Sbjct: 375 RVGRITEALDLIESMPMEPPDSVWGALLMACRMFKDADTAAIAAKRLFETGSRSSGAHML 434

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           LS+ YAA  R  + A ARK +RD+ ++KE   SW+E  G+        R HPR  EIY+ 
Sbjct: 435 LSSTYAAAGRHVDAALARKAMRDAGIRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNV 494

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           LEK+ E+M   GY  +T   + DV+   K   L +HSE+LA+  GL+ +  GVPIR+MKN
Sbjct: 495 LEKVGEKMAVAGYVADTSAVVKDVDRDEKCASLGYHSERLAIALGLLIVPEGVPIRVMKN 554

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+C DCH+ +K+ S+  GR  ++RD  RFH F +G CSC DFW
Sbjct: 555 LRVCDDCHNAVKYLSKCTGRVVVLRDNRRFHRFEDGLCSCGDFW 598


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/644 (37%), Positives = 352/644 (54%), Gaps = 81/644 (12%)

Query: 35  TLQATLQSCARERAPVRGKV--CHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
            L   +++CA   A   GK   C A + G+GL++  L+S  L++ Y +   +  AR VFD
Sbjct: 76  VLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSS--LLHMYVQFDHLKDARNVFD 133

Query: 93  EMPQRCIV-----------------------------------SWNTIIGSYTTNGREQE 117
           ++PQ  +V                                   SWN +I  +  +G   +
Sbjct: 134 KLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLD 193

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           AV +F NM  EG  P    +VSSVL A           Q+H + +K  +  + FV +AL+
Sbjct: 194 AVLMFQNMHLEGLKPDGT-SVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALI 252

Query: 178 DVYAKCGLISDASRVFESMPE---------------------------------RNEVTW 204
           D+Y KC   S+ S VF  M E                                  N V+W
Sbjct: 253 DMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSW 312

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +SM+A   QN    EAL LFR  Q+ G++ N  TI  ++ AC  +AAL+ GK  H    +
Sbjct: 313 TSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLR 372

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            G  ++++  S+L+DMYAKCG ++ +   F  +  +N+V WN++++G++ H ++ E + +
Sbjct: 373 NGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINI 432

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           FE MQ+ G  P+  ++  VLSAC+  G+ E+G  YFD M + H V   + HYSCM+ +LG
Sbjct: 433 FELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLG 492

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           R+G + EAY +I  MPF+  + +WG+LL+SCR +  ++L EIAAK++F +EP N GN++L
Sbjct: 493 RSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYIL 552

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
           LSNIYA+   W EV   R ++R   +KK    SW+EIK        G  +HP++ +I  K
Sbjct: 553 LSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEK 612

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L KL  EMKK GY P T+  L DVE+  K+++L  HSEKLA+  GL+   PG P++++KN
Sbjct: 613 LAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKN 672

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LRIC DCH+ +KF S    RE  VRD NRFH F  G CSC D+W
Sbjct: 673 LRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 206/471 (43%), Gaps = 92/471 (19%)

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           + +F  ML +G  P S   + +V+  CAA   +   KQ+H FAL + +  +  V ++LL 
Sbjct: 59  IRVFSYMLTQGIVPDSR-VLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLH 117

Query: 179 VYAKCGLISDASRVFESMP-----------------------------------ERNEVT 203
           +Y +   + DA  VF+ +P                                   E N V+
Sbjct: 118 MYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVS 177

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+ M++GF ++  Y +A+++F+   + GL+ +  ++SSV+ A   L   + G Q+H  + 
Sbjct: 178 WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVI 237

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK----------------------- 300
           K G G + F  S+L+DMY KC C  +   VF+ ++E                        
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297

Query: 301 ----------NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
                     NVV W +MI+  S++ + +E + LF +MQ  G+ PN  T   +L AC +I
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNI 357

Query: 351 GMVEKGKSY--FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             +  GK+   F L   ++ +  +V+  S +ID+  + G +  A  L  +M  +     W
Sbjct: 358 AALLHGKAAHCFSL---RNGIFNDVYVGSALIDMYAKCGRM-LASRLCFDMMPNRNLVSW 413

Query: 409 GSLLAS----CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
            SL+A      + +  + + E+   Q  G +PD+     +LS         E       +
Sbjct: 414 NSLMAGYAMHGKTFEAINIFELM--QRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSM 471

Query: 465 IRDS--EVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513
            R+   E + E     V + G+    R+ E Y+ +       K++ ++P++
Sbjct: 472 SRNHGVEARMEHYSCMVTLLGRSG--RLEEAYAMI-------KQMPFEPDS 513


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 346/639 (54%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L SCA  +A   G+  H+ ++ +GL +    +N ++N Y KCG    A  VF+ M
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERM 225

Query: 95  P-------------------------------QRCIVSWNTIIGSYTTNGREQEAVALFI 123
           P                                R IVSWN +I  Y  NG + +A+ LF 
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            ML E      EFT++SVL ACA   +V   KQ+H + L+  M  N  V  AL+  YAK 
Sbjct: 286 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 345

Query: 184 GLISDASRV---------------------------------FESMPERNEVTWSSMVAG 210
           G + +A R+                                 F  M  R+ V W++M+ G
Sbjct: 346 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 405

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN   +EA+ LFR     G E N +T+++V+  CA LA L  GKQ+H    ++    +
Sbjct: 406 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERS 465

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
              +++++ MYA+ G    A  +F  +   K  + W +MI   ++H +  E + LFE+M 
Sbjct: 466 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 525

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           +AG+ P+  TY+ VLSACSH G V +GK Y+D +  +H + P + HY+CM+D+L RAGL 
Sbjct: 526 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 585

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP +  A  WGSLL++CR ++N ELAE+AA++L  ++P+N+G +  ++N+Y
Sbjct: 586 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 645

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           +A  RW + AR  K  ++  V+KE   SW  I+ K +        HP+   +Y+   ++ 
Sbjct: 646 SACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 705

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           EE+K  G+ P+ +  LHDV+D  K+ELL  HSEKLA+ FGL+       +R+MKNLR+C 
Sbjct: 706 EEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCN 765

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +K  S++  RE IVRD  RFHHF +G CSC D+W
Sbjct: 766 DCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 171/356 (48%), Gaps = 66/356 (18%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +  T N L++ ++K G ++ AR VF EMP+R  VSW  ++      GR  EA+   ++M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +G TP ++FT+++VL +CA  +     +++H F +K  +   V V  ++L++Y KCG  
Sbjct: 157 ADGFTP-TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDA 215

Query: 187 SDASRVFE-------------------------------SMPERNEVTWSSMVAGFVQNE 215
             AS VFE                               SMP R+ V+W++M+AG+ QN 
Sbjct: 216 ETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNG 275

Query: 216 LYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           L  +AL LF R      +  ++FTI+SV+ ACA L  +  GKQVHA + +T    N    
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 335

Query: 275 SSLVDMYAKCGCVVDAYFV---------------------------------FSGIEEKN 301
           ++L+  YAK G V +A  +                                 F  +  ++
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           VV W  MI G+ ++ R+ E + LF  M   G  PN  T  +VLS C+ +  ++ GK
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGK 451



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 147/300 (49%), Gaps = 38/300 (12%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RNVF   +LL ++AK G ++DA  VF  MPER+ V+W+ MV G  +   + EA+      
Sbjct: 96  RNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
              G    QFT+++V+ +CA   A   G++VH+ + K G GS +  A+S+++MY KCG  
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDA 215

Query: 288 VDAYFV-------------------------------FSGIEEKNVVLWNTMISGFSRHA 316
             A  V                               F  +  +++V WN MI+G++++ 
Sbjct: 216 ETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNG 275

Query: 317 RSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
              + + LF +M  ++ + P+E T  SVLSAC+++G V  GK     +++      N   
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAY-NSQV 334

Query: 376 YSCMIDILGRAGLIHEAYDLI-LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
            + +I    ++G +  A  ++  +M  D     + +LL       ++E    +A+++FG+
Sbjct: 335 TNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME----SAREMFGV 390


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 342/588 (58%), Gaps = 40/588 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV----------- 100
           G+  H +I+ +G   +    + L+  Y+K GLI  A++VFDEM  + +V           
Sbjct: 159 GRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLR 218

Query: 101 --------------------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                               +W T++  +T NG E +A+  F  M  +G     ++T  S
Sbjct: 219 CKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQG-IAIDQYTFGS 277

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC A   + + KQ+H + ++   D NVFVG+AL+D+Y+KC  I  A   F  M  +N
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKN 337

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W++++ G+ QN   EEA+ +F   Q  G++ + FT+ SVI +CA LA+L +G Q H 
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC 397

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +   +G    +  +++LV +Y KCG + DA+ +F  +   + V W  +++G+++  R+ E
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKE 457

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM    + P+  T+I VLSACS  G VEKG SYF  M K H ++P   HY+CMI
Sbjct: 458 TIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMI 517

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+  R+G + EA + I  MP    A  WG+LL++CR   ++E+ + AA+ L  ++P N  
Sbjct: 518 DLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPA 577

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
           +++LL +++A    W +VA+ R+ +RD +VKKE   SW++ K K        ++HP    
Sbjct: 578 SYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKG 637

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY KLE L  +M + GYKP+    LHDV D+ K  ++ HHSEKLA+ FGLM +   +PIR
Sbjct: 638 IYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIR 697

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I+KNLR+C DCH+  K  S+I GR+ +VRD  RFH F+NG CSC DFW
Sbjct: 698 IVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 209/408 (51%), Gaps = 44/408 (10%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
            T N L++  +   L+     +F  M QR  VS+N +I  ++  G    AV L+  +LR 
Sbjct: 73  FTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRA 132

Query: 129 GKTPY-SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
           G +   S  T+S+++ A +A  D    +Q H   L+     N FVG+ L+ +YAK GLI 
Sbjct: 133 GSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIG 192

Query: 188 DASRVF-------------------------------ESMPERNEVTWSSMVAGFVQNEL 216
           DA RVF                               E M +R+ +TW++MV GF QN L
Sbjct: 193 DAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGL 252

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
             +AL  FRR +  G+  +Q+T  S++ AC  L+AL QGKQ+HA + +T +  N+F  S+
Sbjct: 253 ESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSA 312

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           LVDMY+KC  +  A   F  +  KN++ W  +I G+ ++  S E + +F +MQ+ G+ P+
Sbjct: 313 LVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY----SCMIDILGRAGLIHEA 392
           + T  SV+S+C+++  +E+G  +  L      ++  + HY    + ++ + G+ G I +A
Sbjct: 373 DFTLGSVISSCANLASLEEGAQFHCLA-----LVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 393 YDLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAKQLF-GMEPDN 438
           + L   M F    S W +L+     + R  E  ++  K L   ++PD 
Sbjct: 428 HRLFDEMLFHDQVS-WTALVTGYAQFGRAKETIDLFEKMLAKDVKPDG 474



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 142/283 (50%), Gaps = 3/283 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T  + L +C    A  +GK  HA II    +++    + L++ YSKC  I  A  
Sbjct: 269 AIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAET 328

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
            F  M  + I+SW  +I  Y  NG  +EAV +F  M R+G  P  +FT+ SV+ +CA   
Sbjct: 329 AFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDP-DDFTLGSVISSCANLA 387

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            + E  Q H  AL + +   + V  AL+ +Y KCG I DA R+F+ M   ++V+W+++V 
Sbjct: 388 SLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVT 447

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFG 268
           G+ Q    +E + LF +     ++ +  T   V+ AC+    + +G    H++    G  
Sbjct: 448 GYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIV 507

Query: 269 SNMFAASSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
                 + ++D+Y++ G + +A  F+       + + W T++S
Sbjct: 508 PIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLS 550



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 35/304 (11%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           N+F   ALL   A   L+ D   +F SM +R+ V++++++AGF     +  A+ L+    
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 229 VLG--LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
             G  +  ++ T+S+++ A + L     G+Q H  + + GFG N F  S LV MYAK G 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 287 VVDAYFVFSGIEEKNVVL-------------------------------WNTMISGFSRH 315
           + DA  VF  ++ KNVV+                               W TM++GF+++
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               + +  F +M+  G+  ++ T+ S+L+AC  +  +E+GK     +++ H    NVF 
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTH-YDDNVFV 309

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-QLFGM 434
            S ++D+  +   I  A      M      S    ++   +N  + E   + ++ Q  G+
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 435 EPDN 438
           +PD+
Sbjct: 370 DPDD 373


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/626 (37%), Positives = 359/626 (57%), Gaps = 55/626 (8%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           + ++ +L   L +CA   A +RG+  H   I  GL +D    N +++ Y+KCG +  A K
Sbjct: 361 SPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANK 420

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-----------TPYSE--- 135
           VF  M  + +VSWN ++  Y+  GR + A++LF  M  E             T Y++   
Sbjct: 421 VFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQ 480

Query: 136 --------------------FTVSSVLCACAAKRDVFECKQLHVFALKAAMD-------- 167
                                T+ S+L AC +   +   K+ H +A+K  ++        
Sbjct: 481 GCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGA 540

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFR 225
            ++ V   L+D+YAKC     A ++F+S+   +R+ VTW+ M+ G+ Q+     AL LF 
Sbjct: 541 DDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFS 600

Query: 226 RAQVL--GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM-FAASSLVDMYA 282
               +   ++ N FT+S  + ACA LAAL  G+QVHA + +  +GS M F A+ L+DMY+
Sbjct: 601 GMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYS 660

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           K G V  A  VF  + ++N V W ++++G+  H R  + + +F++M++  L P+  T++ 
Sbjct: 661 KSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLV 720

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           VL ACSH GMV+ G ++F+ M K   V P   HY+CM+D+ GRAG + EA  LI  MP +
Sbjct: 721 VLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPME 780

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462
            T  +W +LL++CR + N+EL E AA +L  +E  N G++ LLSNIYA  RRW++VAR R
Sbjct: 781 PTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIR 840

Query: 463 KLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETE 514
             ++ + +KK    SW++ +        G R+HP+  +IY  L  L++ +K +GY P+T 
Sbjct: 841 YTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTS 900

Query: 515 HDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIA 574
             LHDV+D  K +LL  HSEKLAL +G++ L P  PIRI KNLRICGDCHS + + S+I 
Sbjct: 901 FALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKII 960

Query: 575 GRETIVRDLNRFHHFTNGSCSCWDFW 600
             E I+RD +RFHHF NGSCSC  +W
Sbjct: 961 EHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 197/428 (46%), Gaps = 51/428 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++CA   +   G   HA +   G  ++    N +++ Y KCG +  A  +FD++
Sbjct: 261 TFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL 320

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
             R I   VSWN+++ +Y        A+ALF  M           ++ ++L ACA+    
Sbjct: 321 CHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAAS 380

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              +Q+H F++++ +  +VFVG A++D+YAKCG + +A++VF+ M  ++ V+W++MV G+
Sbjct: 381 LRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGY 440

Query: 212 VQNELYEEALILFRRAQVLGLEY-----------------------------------NQ 236
            Q    E AL LF R     +E                                    N 
Sbjct: 441 SQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNV 500

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCK--------TGFGSNMFAASSLVDMYAKCGCVV 288
            T+ S++ AC  + AL+ GK+ H    K             ++   + L+DMYAKC    
Sbjct: 501 VTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTE 560

Query: 289 DAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNEQTYISVL 344
            A  +F  +  ++++VV W  MI G+++H  +   + LF  M      + PN+ T    L
Sbjct: 561 VARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCAL 620

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            AC+ +  +  G+     +++       +F  +C+ID+  ++G +  A  +  NMP    
Sbjct: 621 VACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP-QRN 679

Query: 405 ASMWGSLL 412
           A  W SL+
Sbjct: 680 AVSWTSLM 687



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 44/347 (12%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR--CIVSWNTIIGSY 109
            K+ H + I  GL     T+  LI  Y      + A  + + +P     +  WN +I   
Sbjct: 177 AKLLHQQSIMQGLLFHLATN--LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRA 234

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
              G  ++   L+  M   G TP   +T   V  ACA    +     LH    ++    N
Sbjct: 235 LHLGSPRDVFTLYRQMKSLGWTP-DHYTFPFVFKACANLSSLSLGASLHATVSRSGFASN 293

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNELYEEALILFRR 226
           VFV  A++ +Y KCG +  A  +F+ +  R   + V+W+S+V+ ++       AL LF +
Sbjct: 294 VFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHK 353

Query: 227 AQVLGL-EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
                L   +  ++ +++ ACA LAA ++G+QVH    ++G   ++F  +++VDMYAKCG
Sbjct: 354 MTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCG 413

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ--------------- 330
            + +A  VF  ++ K+VV WN M++G+S+  R    + LFE+M +               
Sbjct: 414 KMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVIT 473

Query: 331 --------------------AGLHPNEQTYISVLSACSHIGMVEKGK 357
                                G  PN  T +S+LSAC  +G +  GK
Sbjct: 474 GYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGK 520


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/612 (37%), Positives = 356/612 (58%), Gaps = 44/612 (7%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++    A  ++CA     +R K  H      G+ +D    N LI+ Y KC  + GAR+VF
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D++  R +VSW ++   Y   G  ++ + +F  M   G  P +  TVSS+L ACA  +D+
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKP-NPMTVSSILPACAELKDL 195

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN----------- 200
              K++H FA++  M  N+FV +AL+ +YAKC  + +A  VF+ MP R+           
Sbjct: 196 KSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAY 255

Query: 201 ------------------------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
                                   E TW++++ G ++N   EEA+ +FR+ Q +G + N+
Sbjct: 256 FKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNE 315

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            TISS++ AC+    L  GK++H  + +     ++ + ++L+ MYAKCG +  +  VF  
Sbjct: 316 ITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDM 375

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           +  K+VV WNTMI   + H    E + LF+KM  + + PN  T+  VLS CSH  +VE+G
Sbjct: 376 MRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEG 435

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
              F+ M + H V P+  HYSC++DI  RAG ++EAY  I  MP + TAS WG+LLA+CR
Sbjct: 436 VQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACR 495

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
            Y+N+ELA+I+AK+LF +EP+N GN++ L NI    + W E ++ R L+++  + K    
Sbjct: 496 VYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGC 555

Query: 477 SWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
           SW+++         G +++    +IY+ L++LVE+MK  GYKP+T++ L D++   K E 
Sbjct: 556 SWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAES 615

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHH 588
           L +HSEKLA+ FG++ L     IR+ KNLRICGDCH+ +K+ S++ G   +VRD  RFHH
Sbjct: 616 LCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHH 675

Query: 589 FTNGSCSCWDFW 600
           F NG+CSC D W
Sbjct: 676 FKNGNCSCKDLW 687



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 155/292 (53%), Gaps = 1/292 (0%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           LI      G  + AR++FD +PQ    + +T+I + TT+G   EA+ ++ ++   G  P 
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
               +++   ACA   D    K++H  A +  +  +VFVG AL+  Y KC  +  A RVF
Sbjct: 78  MPVFLAAAK-ACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + +  R+ V+W+S+ + +V+     + + +FR     G++ N  T+SS++ ACA L  L 
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            GK++H    + G   N+F  S+LV +YAKC  V +A  VF  +  ++VV WN +++ + 
Sbjct: 197 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           ++    +   LF KM + G+  +E T+ +V+  C   G  E+    F  M K
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 308



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 122/246 (49%), Gaps = 1/246 (0%)

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G  L+ V    G  + A ++F+++P+ +  T S++++    + L  EA+ ++   Q  G
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ +     +   ACA     ++ K+VH    + G  S++F  ++L+  Y KC CV  A 
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 133

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  +  ++VV W ++ S + +     + M +F +M  +G+ PN  T  S+L AC+ + 
Sbjct: 134 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 193

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            ++ GK      V+ H ++ N+F  S ++ +  +   + EA  +   MP     S  G L
Sbjct: 194 DLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 252

Query: 412 LASCRN 417
            A  +N
Sbjct: 253 TAYFKN 258


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 344/605 (56%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     +   R+ A   G+  H  ++  GL  +      L+  Y  CG +  AR VFD  
Sbjct: 141 TFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 200

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  +++WN II +Y   G+ +E+  LF+ M  +   P +  T+  VL AC+  +D+   
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP-TTVTLVLVLSACSKLKDLRTG 259

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM------------------ 196
           K++H +     ++ N+ +  A++D+YA CG +  A  +F SM                  
Sbjct: 260 KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNL 319

Query: 197 -------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                        PE++ V+W++M+ G++++  ++EAL LFR  Q   ++ ++FT+ SV+
Sbjct: 320 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 379

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            ACA L AL  G+ +   + +    +++F  ++L+DMY KCG V  A  +F  + +++  
Sbjct: 380 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 439

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W  MI G + +    + + +F  M +A + P+E TYI VLSAC+H G+V+KG+ YF  M
Sbjct: 440 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRM 499

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
             QH + PN+ HY C++D+L RAG + EAY++I NMP  A + +WG+LLA CR YR  ++
Sbjct: 500 TSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDM 559

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
           AE+  KQ+  +EPDN   ++LL NIYAA +RW ++   R+++ D  +KK    S +E+ G
Sbjct: 560 AEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNG 619

Query: 484 K--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
           +        R+HP+   I +KL+K+ +++K  GY P+      D+ +  K+  +  HSEK
Sbjct: 620 RVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEK 679

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   PGV IRI KNLR+C DCH+  K  S++  RE IVRD  RFHHF +G CS
Sbjct: 680 LAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCS 739

Query: 596 CWDFW 600
           C D+W
Sbjct: 740 CKDYW 744



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 210/431 (48%), Gaps = 38/431 (8%)

Query: 2   KSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIG 61
           ++LL ++H    K  ++ A  S++  + +     L + L++C    +  + +  H + I 
Sbjct: 8   RTLLHHRHVKKPKQMTTIAATSSALKSFSPPTHPLISLLETC---ESMDQLQQVHCQAIK 64

Query: 62  MGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119
            GLN + +  N ++ F    + G    AR++FDE+P+  +  WNT+I  Y+     Q  V
Sbjct: 65  KGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGV 124

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           +L++ MLR G  P   +T   +         +   +QLH   LK  +  NVFV TAL+ +
Sbjct: 125 SLYLEMLRRGVKP-DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQM 183

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y  CG +  A  VF+  P+ + +TW+ +++ + +   +EE+  LF   +   +     T+
Sbjct: 184 YLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTL 243

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
             V+ AC+ L  L  GK+VH+ +      SN+   ++++DMYA CG +  A  +F  +  
Sbjct: 244 VLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNN 303

Query: 300 KNVVLWNTMISGFS-------------------------------RHARSVEVMILFEKM 328
           ++++ W T++SGF+                               R  R  E + LF  M
Sbjct: 304 RDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNM 363

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           Q   + P+E T +SVL+AC+H+G +E G+ +    + ++ +  ++F  + +ID+  + G 
Sbjct: 364 QATNVKPDEFTMVSVLTACAHLGALELGE-WIRTYIDRNKIKNDLFVRNALIDMYFKCGD 422

Query: 389 IHEAYDLILNM 399
           + +A  +   M
Sbjct: 423 VDKAESIFREM 433



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 130/274 (47%), Gaps = 4/274 (1%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDV--YAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + +Q+H  A+K  ++ N  +   ++      + G    A R+F+ +PE N   W++M+ G
Sbjct: 54  QLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRG 113

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + + +  +  + L+      G++ +++T   +        AL  G+Q+H  + K G   N
Sbjct: 114 YSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYN 173

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F  ++LV MY  CG +  A  VF    + +V+ WN +IS +++  +  E   LF  M+ 
Sbjct: 174 VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED 233

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
             + P   T + VLSACS +  +  GK      VK   V  N+   + MID+    G + 
Sbjct: 234 KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY-VKNCKVESNLVLENAMIDMYADCGEMD 292

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
            A  +  +M      S W ++++   N   +++A
Sbjct: 293 SALGIFRSMNNRDIIS-WTTIVSGFTNLGEIDVA 325


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 344/605 (56%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     +   R+ A   G+  H  ++  GL  +      L+  Y  CG +  AR VFD  
Sbjct: 120 TFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 179

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  +++WN II +Y   G+ +E+  LF+ M  +   P +  T+  VL AC+  +D+   
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP-TTVTLVLVLSACSKLKDLRTG 238

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM------------------ 196
           K++H +     ++ N+ +  A++D+YA CG +  A  +F SM                  
Sbjct: 239 KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNL 298

Query: 197 -------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                        PE++ V+W++M+ G++++  ++EAL LFR  Q   ++ ++FT+ SV+
Sbjct: 299 GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVL 358

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            ACA L AL  G+ +   + +    +++F  ++L+DMY KCG V  A  +F  + +++  
Sbjct: 359 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 418

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W  MI G + +    + + +F  M +A + P+E TYI VLSAC+H G+V+KG+ YF  M
Sbjct: 419 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRM 478

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
             QH + PN+ HY C++D+L RAG + EAY++I NMP  A + +WG+LLA CR YR  ++
Sbjct: 479 TSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDM 538

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
           AE+  KQ+  +EPDN   ++LL NIYAA +RW ++   R+++ D  +KK    S +E+ G
Sbjct: 539 AEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNG 598

Query: 484 K--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
           +        R+HP+   I +KL+K+ +++K  GY P+      D+ +  K+  +  HSEK
Sbjct: 599 RVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEK 658

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   PGV IRI KNLR+C DCH+  K  S++  RE IVRD  RFHHF +G CS
Sbjct: 659 LAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCS 718

Query: 596 CWDFW 600
           C D+W
Sbjct: 719 CKDYW 723



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 185/377 (49%), Gaps = 35/377 (9%)

Query: 56  HAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           H + I  GLN + +  N ++ F    + G    AR++FDE+P+  +  WNT+I  Y+   
Sbjct: 38  HCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLD 97

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
             Q  V+L++ MLR G  P   +T   +         +   +QLH   LK  +  NVFV 
Sbjct: 98  FPQLGVSLYLEMLRRGVKP-DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVH 156

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           TAL+ +Y  CG +  A  VF+  P+ + +TW+ +++ + +   +EE+  LF   +   + 
Sbjct: 157 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 216

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
               T+  V+ AC+ L  L  GK+VH+ +      SN+   ++++DMYA CG +  A  +
Sbjct: 217 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 276

Query: 294 FSGIEEKNVVLWNTMISGFS-------------------------------RHARSVEVM 322
           F  +  ++++ W T++SGF+                               R  R  E +
Sbjct: 277 FRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEAL 336

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LF  MQ   + P+E T +SVL+AC+H+G +E G+ +    + ++ +  ++F  + +ID+
Sbjct: 337 ELFRNMQATNVKPDEFTMVSVLTACAHLGALELGE-WIRTYIDRNKIKNDLFVRNALIDM 395

Query: 383 LGRAGLIHEAYDLILNM 399
             + G + +A  +   M
Sbjct: 396 YFKCGDVDKAESIFREM 412



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 130/274 (47%), Gaps = 4/274 (1%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDV--YAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + +Q+H  A+K  ++ N  +   ++      + G    A R+F+ +PE N   W++M+ G
Sbjct: 33  QLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRG 92

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + + +  +  + L+      G++ +++T   +        AL  G+Q+H  + K G   N
Sbjct: 93  YSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYN 152

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F  ++LV MY  CG +  A  VF    + +V+ WN +IS +++  +  E   LF  M+ 
Sbjct: 153 VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED 212

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
             + P   T + VLSACS +  +  GK      VK   V  N+   + MID+    G + 
Sbjct: 213 KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY-VKNCKVESNLVLENAMIDMYADCGEMD 271

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
            A  +  +M      S W ++++   N   +++A
Sbjct: 272 SALGIFRSMNNRDIIS-WTTIVSGFTNLGEIDVA 304


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/556 (41%), Positives = 343/556 (61%), Gaps = 20/556 (3%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G+ + T T+N L+  Y+K G +  ++ +F+    R +VSWNT+I S++ + R  EA+A F
Sbjct: 143 GIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF 202

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AMDRNVFVGTALLDVYA 181
             M+ EG       T++SVL AC+    +   K++H + L+   +  N FVG+AL+D+Y 
Sbjct: 203 RLMVLEG-VELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYC 261

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF-RRAQVLGLEYNQFTIS 240
            C  +    RVF+ +  R    W++M++G+ +N L E+ALILF    +V GL  N  T++
Sbjct: 262 NCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMA 321

Query: 241 SVICACA-GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           SV+ AC   LAA+ +GK++HA   +    S++   S+LVDMYAKCGC+  +  VF+ +  
Sbjct: 322 SVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 381

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKM-QQAG----LHPNEQTYISVLSACSHIGMVE 354
           KNV+ WN +I     H +  E + LF+ M  +AG      PNE T+I+V +ACSH G++ 
Sbjct: 382 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 441

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP--FDATASMWGSLL 412
           +G + F  M   H V P   HY+C++D+LGRAG + EAY+L+  MP  FD   + W SLL
Sbjct: 442 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA-WSSLL 500

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
            +CR ++N+EL E+AAK L  +EP+ A +++LLSNIY++   W +    RK +R   VKK
Sbjct: 501 GACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKK 560

Query: 473 EKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           E   SW+E +        G  +HP+  +++  LE L E+M+K GY P+T   LH+V++  
Sbjct: 561 EPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDE 620

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K+ LL  HSEKLA+ FG++   PG  IR+ KNLR+C DCH+  KF S+I  RE IVRD+ 
Sbjct: 621 KENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVR 680

Query: 585 RFHHFTNGSCSCWDFW 600
           RFHHF  G+CSC D+W
Sbjct: 681 RFHHFKEGTCSCGDYW 696



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 174/346 (50%), Gaps = 29/346 (8%)

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R   SW   + S T +   +EA++ +I M   G  P   F   +VL A +  +D+   
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARP-DNFAFPAVLKAVSGLQDLKTG 111

Query: 155 KQLHVFALK---------------------AAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           +Q+H  A+K                       +    F   AL+ +YAK G + D+  +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           ES  +R+ V+W++M++ F Q++ + EAL  FR   + G+E +  TI+SV+ AC+ L  L 
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 254 QGKQVHA-VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            GK++HA VL       N F  S+LVDMY  C  V     VF  I  + + LWN MISG+
Sbjct: 232 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 291

Query: 313 SRHARSVEVMILF-EKMQQAGLHPNEQTYISVLSACSH-IGMVEKGKSYFDLMVKQHNVL 370
           +R+    + +ILF E ++ AGL PN  T  SV+ AC H +  + KGK      ++  N+L
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIR--NML 349

Query: 371 -PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
             ++   S ++D+  + G ++ +  +   MP +     W  L+ +C
Sbjct: 350 ASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMAC 394



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 27/234 (11%)

Query: 34  STLQATLQSCARERAPV-RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           +T+ + + +C    A + +GK  HA  I   L +D    + L++ Y+KCG ++ +R+VF+
Sbjct: 318 TTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFN 377

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINML----REGKTPYSEFTVSSVLCACAAK 148
           EMP + +++WN +I +   +G+ +EA+ LF NM+    R G+   +E T  +V  AC+  
Sbjct: 378 EMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHS 437

Query: 149 RDVFECKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEV 202
             + E   L     H   ++   D    V    +D+  + G + +A  +  +MP E ++V
Sbjct: 438 GLISEGLNLFYRMKHDHGVEPTSDHYACV----VDLLGRAGQLEEAYELVNTMPAEFDKV 493

Query: 203 -TWSSMVAG--FVQN-ELYEEALILFRRAQVLGLEYN---QFTISSVICACAGL 249
             WSS++      QN EL E A        +L LE N    + + S I + AGL
Sbjct: 494 GAWSSLLGACRIHQNVELGEVAA-----KNLLHLEPNVASHYVLLSNIYSSAGL 542


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/579 (37%), Positives = 341/579 (58%), Gaps = 31/579 (5%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            +L+T+ + L  CA+      GK  H+  I          SN L++ YSKCG + GA +V
Sbjct: 111 VDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 170

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F++M +R +VSW ++I  YT +G    A+ L   M +EG        ++S+L ACA    
Sbjct: 171 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG-VKLDVVAITSILHACARSGS 229

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K +H +     M  N+FV  AL+D+YAKCG +  A+ VF +M  ++ ++W++MV  
Sbjct: 230 LDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE 289

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
                                L+ +  T++ ++ ACA L+AL +GK++H  + + G+ S+
Sbjct: 290 ---------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSD 328

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
              A++LVD+Y KCG +  A  +F  I  K++V W  MI+G+  H    E +  F +M+ 
Sbjct: 329 RHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 388

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ P+E ++IS+L ACSH G++E+G  +F +M    N+ P + HY+CM+D+L R G + 
Sbjct: 389 AGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLS 448

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +AY  I  +P    A++WG+LL  CR Y ++ELAE  A+++F +EP+N G ++LL+NIYA
Sbjct: 449 KAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYA 508

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN---------HPRIAEIYSKLEKLV 501
              +WEEV R R+ I    ++K    SW+EIKG+ N         HP   +I S L+K+ 
Sbjct: 509 EAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMR 568

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            +MK+ GY P+T++ L + ++ +K+  L  HSEKLA+ FGL+ L P   IR+ KNLR+CG
Sbjct: 569 RKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCG 628

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH   KF S+   RE ++RD NRFHHF +G CSC  FW
Sbjct: 629 DCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 189/367 (51%), Gaps = 31/367 (8%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A ++FD++  R ++SWN++I  Y +NG  +  + ++  M+  G       T+ SVL  CA
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCA 124

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
               +   K +H  A+K++ +R +     LLD+Y+KCG +  A RVFE M ERN V+W+S
Sbjct: 125 KSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 184

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+AG+ ++   + A+IL ++ +  G++ +   I+S++ ACA   +L  GK VH  +    
Sbjct: 185 MIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN 244

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             SN+F  ++L+DMYAKCG +  A  VFS +  K+++ WNTM+                 
Sbjct: 245 MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------- 287

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGR 385
                 L P+ +T   +L AC+ +  +E+GK     +++  N   +  H +  ++D+  +
Sbjct: 288 ----GELKPDSRTMACILPACASLSALERGKEIHGYILR--NGYSSDRHVANALVDLYVK 341

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            G++  A  L   +P     S W  ++A      Y N  +A     +  G+EPD      
Sbjct: 342 CGVLGLARLLFDMIPSKDLVS-WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS--- 397

Query: 444 LLSNIYA 450
            +S +YA
Sbjct: 398 FISILYA 404



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 147/266 (55%), Gaps = 3/266 (1%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           AS +F+ + +R+ ++W+SM++G+V N L E  L ++++   LG++ +  TI SV+  CA 
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
              L  GK VH++  K+ F   +  +++L+DMY+KCG +  A  VF  + E+NVV W +M
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+G++R   S   +IL ++M++ G+  +     S+L AC+  G ++ GK   D  +K +N
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKANN 244

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR-NYRNLELAEIA 427
           +  N+F  + ++D+  + G +  A  +   M      S W +++   + + R +     A
Sbjct: 245 MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIIS-WNTMVGELKPDSRTMACILPA 303

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANR 453
              L  +E     +  +L N Y+++R
Sbjct: 304 CASLSALERGKEIHGYILRNGYSSDR 329



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           LV  YA CG + +   VF  +E+KNV LWN M+S +++     E + LF+ M + G+ 
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 59


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 358/607 (58%), Gaps = 40/607 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S L   LQ+CAR ++P  GK  H  II  G++     SN LIN Y KCGLI  A  +F++
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +P R  +SW +I+ +          +++F  M ++       +  + ++ ACA    + +
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS-------------------------- 187
            KQ+H   + + +  +  V ++L+D+YAKCGL                            
Sbjct: 124 GKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 188 -----DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISS 241
                DA ++F+ MP +N ++W+++++G VQ+  + ++  LF   +  G++  + F +SS
Sbjct: 184 SGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSS 243

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           +I A A LA L  GKQ+H ++   G+ S++F +++LVDMYAKC  V+ A  +F  + +++
Sbjct: 244 IIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRD 303

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +V W ++I G ++H  + E + L+ +M   GL PNE T++ ++ ACSH+G+V KG+ +F+
Sbjct: 304 IVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFN 363

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M+K + + P++ HY+C++D+L R+G + EA +LI  MPF    + W +LL++C ++RN 
Sbjct: 364 SMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNT 423

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS------ 475
            +    A  L  ++P++   ++LLSNIYA+   WE V++ R+L+   EVKKE        
Sbjct: 424 LIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVL 483

Query: 476 --KSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
             +S V + G+ +HP   EI+  LE+L  EMKK GY P+T   LHD+E   K+  L  HS
Sbjct: 484 GKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHS 543

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           E+LA+ +GL+   PG+ + I+KNLR+CGDCH+ +KF S I  RE +VRD NR+HHF +G 
Sbjct: 544 ERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGK 603

Query: 594 CSCWDFW 600
           CSC +FW
Sbjct: 604 CSCNNFW 610


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/575 (37%), Positives = 342/575 (59%), Gaps = 10/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T    L +CAR      G+V   +  G G  ND    + ++N Y+KCG +  A KVFD 
Sbjct: 104 TTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDR 163

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R  V+W+T++  +   G+  +A+ +++ M R+G     E  +  V+ ACAA  D   
Sbjct: 164 MRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDG-LEADEVVIVGVMQACAATGDARM 222

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H + L+ AM  +V + T+L+D+YAK GL   A RVFE MP RN+V+WS++++   Q
Sbjct: 223 GASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQ 282

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               +EAL LFR  QV GL  N   +   + AC+ L  L  GK +H  + +T    +   
Sbjct: 283 YGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMV 341

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++++DMY+KCG +  A  +F  +  ++++ WN MI+    H R  + + LF++M++  +
Sbjct: 342 GTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEV 401

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+ S+LSA SH G+VE+GK +F+ MV ++ + P   H  C++D+L R+GL+ EA 
Sbjct: 402 RPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEAN 461

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            L+ ++    T S+  +LL+ C N   LEL E  A+++  ++P + G   L+SN+YAA +
Sbjct: 462 GLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAK 521

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMK 505
            W +V   RKL++D   KK    S +EI+G         ++HP+  +I   + KL  EM+
Sbjct: 522 NWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMR 581

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K+GY P+TE   HD+E+  K++LL  HSE+LA  FGL+   PG  + ++KNLR+CGDCH 
Sbjct: 582 KMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHD 641

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S+IA RE +VRD  RFHHF +G+CSC D+W
Sbjct: 642 AIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 192/387 (49%), Gaps = 19/387 (4%)

Query: 36  LQATLQSCARERAPVRGKVCHAK-IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           L+  L SCA  R   R    HA  I+    +   + S+ L   Y++ G ++ A       
Sbjct: 6   LRRLLSSCAALRTLTR---LHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATA 62

Query: 95  PQR--CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           P     I +WN ++ +++      EA+ +F  +    +   + FT++  L ACA   D+ 
Sbjct: 63  PTSPSSIPAWNALLAAHSRGASPHEALRVFRALPPAARPDSTTFTLA--LSACARLGDLA 120

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             + +   A  A    ++FV +++L++YAKCG + DA +VF+ M +R+ VTWS+MV GFV
Sbjct: 121 TGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFV 180

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
                 +A+ ++ R +  GLE ++  I  V+ ACA       G  VH  L +     ++ 
Sbjct: 181 NAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVV 240

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            ++SLVDMYAK G    A  VF  +  +N V W+ +IS  +++  + E + LF  MQ +G
Sbjct: 241 ISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSG 300

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           LHPN    +  L ACS +G+++ GKS    +++   +  +    + +ID+  + G +  A
Sbjct: 301 LHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLEL--DRMVGTAVIDMYSKCGSLSSA 358

Query: 393 YDLILNMPFDATASM----WGSLLASC 415
                 M FD   S     W  ++A C
Sbjct: 359 -----QMLFDKVVSRDLISWNVMIACC 380


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 341/580 (58%), Gaps = 14/580 (2%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           + T LS L   + + A E      K  H   + +GL +D    +  ++ Y +CG I  A+
Sbjct: 335 STTYLSLLNTHVSTGAWEWV----KEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQ 390

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            +FD++  R + +WN +IG        +EA++LF+ M REG  P +  T  ++L A   +
Sbjct: 391 LIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDAT-TFVNILSANVGE 449

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
             +   K++H +A+ A +  ++ VG AL+ +YAKCG    A +VF+ M ERN  TW+ M+
Sbjct: 450 EALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMI 508

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           +G  Q+    EA  LF +    G+  +  T  S++ ACA   AL   K+VH+     G  
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLV 568

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           S++   ++LV MYAKCG V DA  VF  + E++V  W  MI G ++H R ++ + LF KM
Sbjct: 569 SDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKM 628

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           +  G  PN  ++++VLSACSH G+V++G+  F  + + + + P + HY+CM+D+LGRAG 
Sbjct: 629 KLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQ 688

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA   ILNMP +   + WG+LL +C  Y NLE+AE AAK+   ++P +A  ++LLSNI
Sbjct: 689 LEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNI 748

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKL 500
           YAA   WE+    R +++   ++KE  +SW+E+         G  +HP   EIY+KL+ L
Sbjct: 749 YAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDL 808

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
           ++ +K  GY P+T   L + +   K++ L  HSEKLA+ +GLM      PIR+ KNLR+C
Sbjct: 809 IKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVC 868

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH+  KF S++ GRE + RD  RFHHF +G CSC D+W
Sbjct: 869 SDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/322 (36%), Positives = 176/322 (54%), Gaps = 3/322 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C    +   GK  HA II  G  +D      L+N Y KCG I  A+ +FD+M
Sbjct: 32  TYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKM 91

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R ++SW  +IG     GR QEA   F+ M REG  P S +T  S+L A A+   +   
Sbjct: 92  VERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNS-YTYVSILNANASAGALEWV 150

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H  A+ A +  ++ VG AL+ +YAK G I DA  VF+ M ER+  +W+ M+ G  Q+
Sbjct: 151 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQH 210

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACA--GLAALIQGKQVHAVLCKTGFGSNMF 272
              +EA  LF + +  G   N  T  S++ A A     AL   K+VH    K GF S++ 
Sbjct: 211 GRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLR 270

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+ MYAKCG + DA  VF G+ +++V+ WN MI G +++    E   +F KMQQ G
Sbjct: 271 VGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEG 330

Query: 333 LHPNEQTYISVLSACSHIGMVE 354
             P+  TY+S+L+     G  E
Sbjct: 331 FVPDSTTYLSLLNTHVSTGAWE 352



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 243/523 (46%), Gaps = 62/523 (11%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T +S L A   + A E      K  H+  +  GL  D    N L++ Y+K G I  AR V
Sbjct: 133 TYVSILNANASAGALEWV----KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD M +R I SW  +IG    +GR QEA +LF+ M R G  P     +S +  +      
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTG 248

Query: 151 VFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
             E  K++H  A KA    ++ VG AL+ +YAKCG I DA  VF+ M +R+ ++W++M+ 
Sbjct: 249 ALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G  QN    EA  +F + Q  G   +  T  S++       A    K+VH    + G  S
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVS 368

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   S+ V MY +CG + DA  +F  +  +NV  WN MI G ++     E + LF +M+
Sbjct: 369 DLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMR 428

Query: 330 QAGLHPNEQTYISVLSA----------------CSHIGMVE------------------K 355
           + G  P+  T++++LSA                    G+V+                   
Sbjct: 429 REGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMY 488

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA---TASMWGSLL 412
            K  FD MV++     NV  ++ MI  L + G  HEA+ L L M  +     A+ + S+L
Sbjct: 489 AKQVFDDMVER-----NVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSIL 543

Query: 413 ASCRNYRNLE-LAEIAAKQL-FGMEPD-NAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           ++C +   LE + E+ +  +  G+  D   GN L+  ++YA   +   V  AR++  D  
Sbjct: 544 SACASTGALEWVKEVHSHAVNAGLVSDLRVGNALV--HMYA---KCGSVDDARRVFDD-- 596

Query: 470 VKKEKSKSW-VEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           + +    SW V I G   H R  +       L  +MK  G+KP
Sbjct: 597 MLERDVYSWTVMIGGLAQHGRGLDALD----LFVKMKLEGFKP 635



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 180/363 (49%), Gaps = 8/363 (2%)

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
           +IG Y   G  ++A+ ++  M REG  P +E T  S+L AC +   +   K++H   +++
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQP-NEITYLSILKACCSPVSLKWGKKIHAHIIQS 59

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
               +V V TAL+++Y KCG I DA  +F+ M ERN ++W+ M+ G       +EA   F
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
            + Q  G   N +T  S++ A A   AL   K+VH+     G   ++   ++LV MYAK 
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           G + DA  VF G+ E+++  W  MI G ++H R  E   LF +M++ G  PN  TY+S+L
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 345 --SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
             SA +  G +E  K       K    + ++   + +I +  + G I +A  L+ +   D
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKA-GFISDLRVGNALIHMYAKCGSIDDA-RLVFDGMCD 297

Query: 403 ATASMWGSLLAS-CRNYRNLELAEIAAK-QLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460
                W +++    +N    E   I  K Q  G  PD+   +L L N + +   WE V  
Sbjct: 298 RDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDST-TYLSLLNTHVSTGAWEWVKE 356

Query: 461 ARK 463
             K
Sbjct: 357 VHK 359


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/579 (39%), Positives = 346/579 (59%), Gaps = 25/579 (4%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKV 90
           T+ + + +C  E   VR G   H+  + MG  +D   S  L++ Y+K  +   +  A KV
Sbjct: 256 TMSSMISACT-ELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKV 314

Query: 91  FDEMPQRCIVSWNTIIGSYTTNG-REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           F+ M +  ++SW  +I  Y  +G +E + + LF  ML E   P +  T SS+L ACA   
Sbjct: 315 FERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKP-NHITYSSILKACANIS 373

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D    +Q+H   +K+       VG AL+ +YA+ G + +A RVF  + ER      SM++
Sbjct: 374 DHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYER------SMIS 427

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
              +         L  R   + +  +  T +S+I A A +  L +G+Q+HA+  K GFGS
Sbjct: 428 CITEGR----DAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGS 483

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           + F ++SLV MY++CG + DA   F+ ++++NV+ W +MISG ++H  +   + LF  M 
Sbjct: 484 DRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMI 543

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ PN+ TYI+VLSACSH+G+V +GK YF  M + H ++P + HY+CM+D+L R+GL+
Sbjct: 544 LTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLV 603

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP  A A +W +LL +CR++ N+E+ EIAAK +  +EP +   ++LLSN+Y
Sbjct: 604 KEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLY 663

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           A    W+EVAR R  +RD+ + KE   SW+E++        G  +HPR  +IY KL+ LV
Sbjct: 664 ADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLV 723

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            E+K +GY P+T   LHD+ D  K++ L+ HSEK+A+ FGL+      PIRI KNLR+C 
Sbjct: 724 GEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCA 783

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHS +K+ S+   RE I+RD NRFH   +G CSC ++W
Sbjct: 784 DCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 187/352 (53%), Gaps = 16/352 (4%)

Query: 52  GKVCHAKII-GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ-RCIVSWNTIIGSY 109
           G+  H +++ G  L+ D + +N L+  YS+CG ++ AR VFD M   R IVSW  +    
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-----DVFECKQLHVFALKA 164
             NG E+E++ L   ML  G  P + +T+ +V  AC                +H   L  
Sbjct: 127 ARNGAERESLLLIGEMLESGLLP-NAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWG 185

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
               ++ VG+AL+D+ A+ G ++ A +VF+ + E+  V W+ +++ +VQ E  EEA+ +F
Sbjct: 186 T---DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIF 242

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
                 G E +++T+SS+I AC  L ++  G Q+H++  + GF S+   +  LVDMYAK 
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKS 302

Query: 285 GC--VVD-AYFVFSGIEEKNVVLWNTMISGFSRHA-RSVEVMILFEKMQQAGLHPNEQTY 340
                +D A  VF  + + +V+ W  +ISG+ +   +  +VM+LF +M    + PN  TY
Sbjct: 303 NIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITY 362

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            S+L AC++I   + G+     ++K +    +    + ++ +   +G + EA
Sbjct: 363 SSILKACANISDHDSGRQVHAHVIKSNQAAAHTVG-NALVSMYAESGCMEEA 413



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + + + A      +G+  HA  +  G  +D   SN L++ YS+CG +  A + F+E
Sbjct: 451 STFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNE 510

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R ++SW ++I     +G  + A++LF +M+  G  P ++ T  +VL AC+    V E
Sbjct: 511 LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKP-NDVTYIAVLSACSHVGLVRE 569

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            K+          +   +     ++D+ A+ GL+ +A      MP + + + W +++ 
Sbjct: 570 GKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLG 627


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/589 (40%), Positives = 355/589 (60%), Gaps = 22/589 (3%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           N T+  T +  + SCA++ +   G   H  ++  G + D   +  LIN Y + G I  A 
Sbjct: 75  NPTQ-QTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRAL 133

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           KVFDE  +R I  WN +  +    G  +E + L+I M   G TP   FT + VL AC   
Sbjct: 134 KVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIG-TPSDRFTYTYVLKACVVS 192

Query: 149 R----DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
                 + + K++H   L+   + N+ V T LLDVYAK G +S A+ VF +MP +N V+W
Sbjct: 193 ELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSW 252

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEY-----NQFTISSVICACAGLAALIQGKQVH 259
           S+M+A F +NE+  +AL LF   Q++  E      N  T+ +++ ACAGLAAL QGK +H
Sbjct: 253 SAMIACFAKNEMPMKALELF---QLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIH 309

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             + +    S +   ++L+ MY +CG V+    VF  +++++VV WN++IS +  H    
Sbjct: 310 GYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGK 369

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           + + +FE M   G+ P+  ++I+VL ACSH G+VE+GK  F+ M+ ++ + P + HY+CM
Sbjct: 370 KAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACM 429

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGRA  + EA  LI +M F+   ++WGSLL SCR + N+ELAE A+  LF +EP NA
Sbjct: 430 VDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNA 489

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIA 491
           GN++LL++IYA  + W E     KL+    ++K    SW+E+K K         ++P+I 
Sbjct: 490 GNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIE 549

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           EI++ L KL  EMK  GY P+T   L+D+++  K+ +++ HSEKLA+ FGL+    G  I
Sbjct: 550 EIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETI 609

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RI KNLR+C DCH+  KF S+ A RE +VRD+NRFHHF +G CSC D+W
Sbjct: 610 RIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/576 (38%), Positives = 347/576 (60%), Gaps = 16/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +++C+  R    G   H  ++  G  +    SN LI  Y KC     +R+VFDEM
Sbjct: 12  TFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEM 71

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P +  VSW+ IIG+   + R +E  +LF  ML EG  P    +  ++L A A  R   E 
Sbjct: 72  PDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP----SRGAILNAMACVRSHEEA 127

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             ++   ++  +D +  V +A   ++A+CG +  A ++F+ +  ++ VTW++ +  +V+ 
Sbjct: 128 DDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKA 187

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           ++  EAL L ++  + G+  +  T+  VI AC+ LA+      VH ++  TGF  N   A
Sbjct: 188 DMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII-TTGFFYNQLLA 246

Query: 275 --SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+D+Y KCG +  A  VF G++E+N++ W+ MISG+  H    E + LF++M+ A 
Sbjct: 247 VETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMK-AS 305

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T++S+LSACSH G+V +G   F+ M +   V P   HY+CM+DILGRAG + EA
Sbjct: 306 VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEA 365

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            D I  MP    A++WG+LL +CR + N++LAE+ A+ LF ++P NAG +++L NIY   
Sbjct: 366 CDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLT 425

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            + +E    R L+++  VKK    S +EIK        G R+HP+   IYS+LE+L++ +
Sbjct: 426 GKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRI 485

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           ++ GY P+    LHDV++  K+ +L  HSEKLA+ FGL+ L PG  IRI KNLR+CGDCH
Sbjct: 486 RQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCH 545

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  KF S++ GRE +VRD +RFHHF NG+CSC D+W
Sbjct: 546 TATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 130/258 (50%), Gaps = 11/258 (4%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           MLR G  P   FT   ++ AC+  R      ++H   +K      VF+  +L+ +Y KC 
Sbjct: 1   MLRLGIQP-DNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCD 59

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
               + +VF+ MP++N V+WS+++   +Q++  +E   LFR  Q+L  E ++ +  +++ 
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFR--QMLS-EGSRPSRGAILN 116

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           A A + +  +   V+ V+ + G   +    S+   M+A+CG V  A  +F GI  K++V 
Sbjct: 117 AMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT 176

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W T I  + +    +E + L ++M   G+ P+  T + V+ ACS +       + F L  
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTL-------ASFQLAH 229

Query: 365 KQHNVLPNVFHYSCMIDI 382
             H ++   F Y+ ++ +
Sbjct: 230 IVHGIITTGFFYNQLLAV 247


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/590 (37%), Positives = 342/590 (57%), Gaps = 18/590 (3%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           A A +   + +TL + L + A       G+  HA     GL         LI+ Y+KCG 
Sbjct: 212 AGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGD 271

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  AR +FD M    +V++N +I  Y+ NG    +V LF  ++  G  P S     S L 
Sbjct: 272 MECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSS-----STLV 326

Query: 144 ACAAKRDVFECKQL----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           A       F  + L    H   +KA +D N  V TAL  +Y +   +  A R F++MPE+
Sbjct: 327 ALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEK 386

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
              +W++M++G+ QN L E A+ LF++ Q L +  N  TISS + ACA L AL  GK VH
Sbjct: 387 TMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVH 446

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            ++       N++  ++L+DMY KCG + +A  +F  ++ KNVV WN MISG+  H +  
Sbjct: 447 KIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGA 506

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + L++ M  A LHP   T++SVL ACSH G+V++G + F  M   + + P + H +CM
Sbjct: 507 EALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCM 566

Query: 380 IDILGRAGLIHEAYDLILNMPFDATAS-MWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           +D+LGRAG + EA++LI   P  A    +WG+LL +C  +++ +LA++A+++LF +EP+N
Sbjct: 567 VDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPEN 626

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRI 490
            G ++LLSN+Y + +++ E A  R+  +  ++ K    + +EI         G R HP+ 
Sbjct: 627 TGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQS 686

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
             IY  LEKL  +M + GY+P+TE  L+DVE+  K+ ++  HSEKLA+ FGL+   PG  
Sbjct: 687 DAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTE 746

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           IRI+KNLR+C DCH+  K  S++  R  +VRD +RFHHF +G CSC D+W
Sbjct: 747 IRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 182/378 (48%), Gaps = 17/378 (4%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
           +F+++++AS+ +    +  S   A L+              HA  +  G   D   ++ L
Sbjct: 117 AFAATSLASSCSRGGISPPSAASAALRPL------------HALAVASGFAADNFVASAL 164

Query: 75  INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
              Y      + ARKVFD +P    V WNT++   + +    EA+  F+ M   G     
Sbjct: 165 AKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPD 220

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
             T++SVL A A   +    + +H F  K  + ++  V T L+ +YAKCG +  A  +F+
Sbjct: 221 STTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFD 280

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
            M   + VT++++++G+  N +   ++ LF+    +GL  +  T+ ++I   +       
Sbjct: 281 RMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPL 340

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
              +HA + K G  +N   +++L  +Y +   +  A   F  + EK +  WN MISG+++
Sbjct: 341 AGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQ 400

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           +  +   + LF++MQ   + PN  T  S LSAC+ +G +  GK    ++  +   L NV+
Sbjct: 401 NGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLEL-NVY 459

Query: 375 HYSCMIDILGRAGLIHEA 392
             + +ID+  + G I EA
Sbjct: 460 VMTALIDMYVKCGSIAEA 477


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/644 (36%), Positives = 360/644 (55%), Gaps = 79/644 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L    + CA   A   GK  H      GL+ D      L + Y +CG +  ARKVFD M
Sbjct: 118 VLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRM 177

Query: 95  PQR----------------C-------------------IVSWNTIIGSYTTNGREQEAV 119
            ++                C                   IVSWN I+  +  +G  +EAV
Sbjct: 178 SEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAV 237

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            +F  M   G  P  + TVSSVL +     ++   +Q+H + +K  + ++  V +A+LD+
Sbjct: 238 IMFQKMHHLGFCP-DQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDM 296

Query: 180 YAKCG-------------------------------LISDASRVF----ESMPERNEVTW 204
           Y K G                               L+  A  +F    E   E N V+W
Sbjct: 297 YGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSW 356

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +S++AG  QN    EAL LFR  QV G++ N+ TI S++ AC  +AAL  G+  H    +
Sbjct: 357 TSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                ++   S+L+DMYAKCG +  +  VF+ +  KN+V WN++++G+S H ++ EVM +
Sbjct: 417 VHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSI 476

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           FE + +  L P+  ++ S+LSAC  +G+ ++G  YF++M +++ + P + HYSCM+++LG
Sbjct: 477 FESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLG 536

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG + EAYDLI  +PF+  + +WG+LL SCR   N++LAEIAA++LF +EP+N G ++L
Sbjct: 537 RAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVL 596

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           +SNIYAA   W EV   R  +    +KK    SW+++K K        ++HP+I +I  K
Sbjct: 597 MSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEK 656

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           ++++ EEM+K G++P  +  L DVE+  ++++L  HSEKLA+ FGL+    G P++++KN
Sbjct: 657 MDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKN 716

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LRICGDCH+ +KF S  AGRE  +RD NRFHHF +G CSC DFW
Sbjct: 717 LRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 188/427 (44%), Gaps = 73/427 (17%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+I+  G  ND   S  LI  YS     + A  +   +P   + S++++I + T     
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +++ +F  M   G  P +   + ++   CA        KQ+H  A  + +D + FV  +
Sbjct: 98  SQSIGVFSRMFSHGLIPDTH-VLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGS 156

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVT-------------------------------- 203
           L  +Y +CG + DA +VF+ M E++ VT                                
Sbjct: 157 LFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPN 216

Query: 204 ---WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
              W+ +++GF ++  ++EA+I+F++   LG   +Q T+SSV+ +      L  G+Q+H 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHG 276

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---------------------- 298
            + K G   +    S+++DMY K G V     +F   E                      
Sbjct: 277 YVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDK 336

Query: 299 -------------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
                        E NVV W ++I+G +++ + +E + LF +MQ AG+ PN  T  S+L 
Sbjct: 337 ALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLP 396

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           AC +I  +  G+S     V+ H +L +V   S +ID+  + G I  +  ++ NM      
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVH-LLDDVHVGSALIDMYAKCGRIKMS-QIVFNMMPTKNL 454

Query: 406 SMWGSLL 412
             W SL+
Sbjct: 455 VCWNSLM 461



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 36/270 (13%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q H   LK+    + ++   L+  Y+     +DA  + +S+P+    ++SS++    + +
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           L+ +++ +F R    GL  +   + ++   CA L+A   GKQ+H V C +G   + F   
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEK----------------------------------- 300
           SL  MY +CG + DA  VF  + EK                                   
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           N+V WN ++SGF+R     E +I+F+KM   G  P++ T  SVL +      +  G+   
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
             ++KQ  +L +    S M+D+ G++G ++
Sbjct: 276 GYVIKQ-GLLKDKCVISAMLDMYGKSGHVY 304


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/583 (37%), Positives = 346/583 (59%), Gaps = 13/583 (2%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T+ + L  C      V   V H   +  GL+ +    N LI+ Y K G++  A+ 
Sbjct: 166 AGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQC 225

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF  M  R +V+WN+II      G+   A+ +F  M   G +P    T+ S+  A A   
Sbjct: 226 VFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSP-DVLTLVSLASAIAQGG 284

Query: 150 DVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           D    K LH + ++   D  ++  G A++D+YAK   I  A R+F+SMP ++ V+W++++
Sbjct: 285 DGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLI 344

Query: 209 AGFVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            G++QN L  EA+  +   Q   GL+  Q T  SV+ A + L AL QG ++HA+  K G 
Sbjct: 345 TGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGL 404

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             +++  + L+D+YAKCG + +A  +F  +  ++   WN +ISG   H    E + LF +
Sbjct: 405 NVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSR 464

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQQ G+ P+  T++S+L+ACSH G+V++G+S+FD+M   ++++P   HY+CM D+LGRAG
Sbjct: 465 MQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAG 524

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            + EA++ I NMP    +++WG+LL +CR + N+E+ ++A++ LF ++P+N G ++L+SN
Sbjct: 525 QLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSN 584

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN----------HPRIAEIYSKL 497
           +YA   +W+ V   R L+R   ++K    S +E+K   N          HP+  EI ++L
Sbjct: 585 MYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAEL 644

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
             L+ +++ +GY  +    L DVED  K+ +L +HSE+LA+ FG++      P+ I KNL
Sbjct: 645 RSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNL 704

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+CGDCH+  K+ S+I  RE IVRD NRFHHF +G CSC DFW
Sbjct: 705 RVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 225/444 (50%), Gaps = 31/444 (6%)

Query: 1   MKSLLRYKHKFYYKSFS-SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKI 59
           ++ +L   + F    F+  S I +A +NA+A       A L +CA     VR  V     
Sbjct: 56  LRHILSCAYPFRPDGFTFPSLIRAAPSNASA-------AQLHACALRLGLVRPSV----- 103

Query: 60  IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119
                     TS  L++ Y + G IS A KVFDEM +R + +WN ++     N R  EAV
Sbjct: 104 ---------FTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAV 154

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            LF  M+ EG       TVSSVL  C    D      +HV+A+K  +D+ +FV  AL+DV
Sbjct: 155 GLFGRMVGEG-VAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDV 213

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y K G++ +A  VF  M  R+ VTW+S+++G  Q      AL +F+  +  G+  +  T+
Sbjct: 214 YGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTL 273

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
            S+  A A        K +H  + + G+   ++ A +++VDMYAK   +  A  +F  + 
Sbjct: 274 VSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMP 333

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-AGLHPNEQTYISVLSACSHIGMVEKGK 357
            ++ V WNT+I+G+ ++  + E +  +  MQ+  GL   + T++SVL A SH+G +++G 
Sbjct: 334 VQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGM 393

Query: 358 SYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--S 414
               L +K   NV  +V+  +C+ID+  + G + EA  L   MP  +T   W ++++   
Sbjct: 394 RMHALSIKIGLNV--DVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP-WNAIISGLG 450

Query: 415 CRNYRNLELAEIAAKQLFGMEPDN 438
              +    L   +  Q  G++PD+
Sbjct: 451 VHGHGAEALTLFSRMQQEGIKPDH 474


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 348/605 (57%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L+   R  A   GKV     +  G +++       I+ +S C L+  ARKVFD  
Sbjct: 109 TFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMG 168

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +V+WN ++  Y    + +++  LFI M + G +P S  T+  +L AC+  +D+   
Sbjct: 169 DAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNS-VTLVLMLSACSKLKDLEGG 227

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM------------------ 196
           K ++ +     ++RN+ +   L+D++A CG + +A  VF++M                  
Sbjct: 228 KHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANI 287

Query: 197 -------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                        PER+ V+W++M+ G+++   + EAL LFR  Q+  ++ ++FT+ S++
Sbjct: 288 GQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSIL 347

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            ACA L AL  G+ V   + K    ++ F  ++L+DMY KCG V  A  VF  +  K+  
Sbjct: 348 TACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKF 407

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W  MI G + +    E + +F  M +A + P+E TYI VL AC+H GMVEKG+S+F  M
Sbjct: 408 TWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISM 467

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
             QH + PNV HY CM+D+LGRAG + EA+++I+NMP    + +WGSLL +CR ++N++L
Sbjct: 468 TMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQL 527

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--- 480
           AE+AAKQ+  +EP+N   ++LL NIYAA +RWE + + RKL+ +  +KK    S +E   
Sbjct: 528 AEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNG 587

Query: 481 -----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                + G ++HP+  EIY+KLE +++++ K GY P+T     D+ +  K+  L  HSEK
Sbjct: 588 NVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEK 647

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ + L+   PG+ IRI+KNLR+C DCH   K  S    RE IVRD  RFHHF +GSCS
Sbjct: 648 LAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCS 707

Query: 596 CWDFW 600
           C +FW
Sbjct: 708 CNNFW 712



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 187/376 (49%), Gaps = 41/376 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  H+  I MGL++D L    +I F    + G +  AR+VFD +PQ  +  WNT+I  Y+
Sbjct: 24  KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYS 83

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
                Q  V++++ ML     P   FT   +L        +   K L   A+K   D N+
Sbjct: 84  RINHPQNGVSMYLLMLASNIKP-DRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNL 142

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FV  A + +++ C L+  A +VF+       VTW+ M++G+ + + ++++ +LF   +  
Sbjct: 143 FVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKR 202

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  N  T+  ++ AC+ L  L  GK ++  +       N+   + L+DM+A CG + +A
Sbjct: 203 GVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEA 262

Query: 291 YFVFSGIEEKNVVLWNTMISGFS-------------------------------RHARSV 319
             VF  ++ ++V+ W ++++GF+                               R  R +
Sbjct: 263 QSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFI 322

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG---KSYFDLMVKQHNVLPNVFHY 376
           E + LF +MQ + + P+E T +S+L+AC+H+G +E G   K+Y D    ++++  + F  
Sbjct: 323 EALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYID----KNSIKNDTFVG 378

Query: 377 SCMIDILGRAGLIHEA 392
           + +ID+  + G + +A
Sbjct: 379 NALIDMYFKCGNVGKA 394



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 160/334 (47%), Gaps = 19/334 (5%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDV--YAKCGLISDASRVFESMPERNEVTWSS 206
           + +++ KQ+H   +K  +  +      ++      + G +  A +VF+++P+     W++
Sbjct: 18  KSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNT 77

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV--HAVLCK 264
           M+ G+ +    +  + ++       ++ ++FT   ++       AL  GK +  HAV  K
Sbjct: 78  MIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV--K 135

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            GF SN+F   + + M++ C  V  A  VF   +   VV WN M+SG++R  +  +  +L
Sbjct: 136 HGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKML 195

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL----MVKQHNVLPNVFHYSCMI 380
           F +M++ G+ PN  T + +LSACS +  +E GK  +      +V+++ +L NV     +I
Sbjct: 196 FIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV-----LI 250

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+    G + EA  +  NM      S W S++    N   ++LA     Q+   E D   
Sbjct: 251 DMFAACGEMDEAQSVFDNMKNRDVIS-WTSIVTGFANIGQIDLARKYFDQI--PERDYVS 307

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEK 474
              ++      NR  E +A  R++ + S VK ++
Sbjct: 308 WTAMIDGYLRMNRFIEALALFREM-QMSNVKPDE 340


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/593 (38%), Positives = 341/593 (57%), Gaps = 46/593 (7%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK--VFDEMPQRCIVSWNTIIGSYT 110
           K  HA II  GL+  +     LI   +K  +  G+    VF ++       W  +I  Y 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA-LKAAMDRN 169
             G   E+   +  M R+G  P S FT S++  AC A  ++   KQ+H    L      +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVS-FTFSALFKACGAALNMDLGKQVHAQTILIGGFASD 177

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVT-------------------------- 203
           ++VG +++D+Y KCG +  A +VF+ M ER+ V+                          
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPS 237

Query: 204 -----WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
                W++MV G+ QN   +EAL  F++ Q +G+E ++ T++ VI ACA L A+     +
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297

Query: 259 HAVLCKTGFG--SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
             +  ++GFG   N+   S+L+DMY+KCG   +AY VF  ++E+NV  +++MI G++ H 
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R+   + LF  M +  + PN+ T+I +LSACSH G+VE+G+  F  M K   V P+  HY
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           +CM+D+LGRAG + EA DL+  MP +    +WG+LL +CR + N ++A+IAA +LF +EP
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---------GKRNH 487
           +  GN++LLSNIYA+  RWEEV++ RK+IR+   KK    SW E K         G   H
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTH 537

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
           PR +EI   L++L+E ++  GYKP      +D+ D  K+ +L+ HSEKLAL +GL+C   
Sbjct: 538 PRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEA 597

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G  I+IMKN+RIC DCH+ M  AS I GRE IVRD  RFHHF NG+CSC +FW
Sbjct: 598 GDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 143/318 (44%), Gaps = 37/318 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  A  ++C        GK  HA+ I +G   +D    N +I+ Y KCG +  ARKVFDE
Sbjct: 144 TFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDE 203

Query: 94  MPQRCIVSWNTII-------------------------------GSYTTNGREQEAVALF 122
           M +R +VSW  +I                                 Y  NGR +EA+  F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYF 263

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR--NVFVGTALLDVY 180
             M   G     E T++ V+ ACA    V     +   A ++      NV VG+AL+D+Y
Sbjct: 264 QKMQDVGMET-DEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMY 322

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           +KCG   +A +VFE M ERN  ++SSM+ G+  +     AL LF       +  N+ T  
Sbjct: 323 SKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFI 382

Query: 241 SVICACAGLAALIQGKQVHAVLCK-TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE- 298
            ++ AC+    + QG+Q+ A + K  G   +    + +VD+  + GC+ +A  +   +  
Sbjct: 383 GILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM 442

Query: 299 EKNVVLWNTMISGFSRHA 316
           E N  +W  ++     H 
Sbjct: 443 EPNGGVWGALLGACRIHG 460



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 40/297 (13%)

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI--SDASRV 192
           E+ + S+L  C     +   KQ+H   ++  + +  +V T L+ +  K  +   S    V
Sbjct: 42  EWRLMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLV 98

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F  +   N   W++M+ G+    L  E+   + R +  G+    FT S++  AC     +
Sbjct: 99  FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158

Query: 253 IQGKQVHA-VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV--------- 302
             GKQVHA  +   GF S+++  +S++D+Y KCG +  A  VF  + E++V         
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218

Query: 303 ----------------------VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
                                 V W  M++G++++ R  E +  F+KMQ  G+  +E T 
Sbjct: 219 YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILGRAGLIHEAYDL 395
             V+SAC+ +G V+      D+  ++    P  NV   S +ID+  + G   EAY +
Sbjct: 279 AGVISACAQLGAVKHANWIRDI-AERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKV 334



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 3/173 (1%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY--FVFSGIEEKNVVLWNTMISG 311
           Q KQVHA + + G     +  + L+ M  K    + +Y   VF  +   N  LW  MI G
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           ++      E    + +M++ G+ P   T+ ++  AC     ++ GK      +       
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           +++  + MID+  + G +  A  +   M      S W  L+ +   Y ++E A
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS-WTELIVAYAKYGDMESA 228


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 355/580 (61%), Gaps = 20/580 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+  + ++ CA  +     +  H  ++  G   D      L+  YSKC  +  A ++F E
Sbjct: 296 SSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKE 355

Query: 94  MPQRCI---VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           +   C+   VSW  +I  +  N  ++EAV LF  M R+G  P +EFT S +L A      
Sbjct: 356 IG--CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRP-NEFTYSVILTALP---- 408

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           V    ++H   +K   +R+  VGTALLD Y K G + +A++VF  + +++ V WS+M+AG
Sbjct: 409 VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAG 468

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL-AALIQGKQVHAVLCKTGFGS 269
           + Q    E A+ +F      G++ N+FT SS++  CA   A++ QGKQ H    K+   S
Sbjct: 469 YAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDS 528

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++  +S+L+ MYAK G +  A  VF    EK++V WN+MISG+++H ++++ + +F++M+
Sbjct: 529 SLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMK 588

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           +  +  +  T+I V +AC+H G+VE+G+ YFD+MV+   + P   H SCM+D+  RAG +
Sbjct: 589 KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQL 648

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            +A  +I NMP  A +++W ++LA+CR ++  EL  +AA+++  M+P+++  ++LLSN+Y
Sbjct: 649 EKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMY 708

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           A +  W+E A+ RKL+ +  VKKE   SW+E+K        G R+HP   +IY KLE L 
Sbjct: 709 AESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLS 768

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
             +K LGY+P+T + L D++D  K+ +L  HSE+LA+ FGL+    G P+ I+KNLR+CG
Sbjct: 769 TRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCG 828

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHF-TNGSCSCWDFW 600
           DCH  +K  ++I  RE +VRD NRFHHF ++G CSC DFW
Sbjct: 829 DCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 187/333 (56%), Gaps = 7/333 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L   A E    RG   H  ++  GL+     SN LIN Y KCG +  AR +FD+ 
Sbjct: 196 TFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKT 255

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V+WN++I  Y  NG + EA+ +F +M R      SE + +SV+  CA  +++   
Sbjct: 256 EVKSVVTWNSMISGYAANGLDLEALGMFYSM-RLNYVRLSESSFASVIKLCANLKELRFT 314

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
           +QLH   +K     +  + TAL+  Y+KC  + DA R+F+ +    N V+W++M++GF+Q
Sbjct: 315 EQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQ 374

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N+  EEA+ LF   +  G+  N+FT S ++ A      +I   +VHA + KT +  +   
Sbjct: 375 NDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL----PVISPSEVHAQVVKTNYERSSTV 430

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+D Y K G V +A  VFSGI++K++V W+ M++G+++   +   + +F ++ + G+
Sbjct: 431 GTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGI 490

Query: 334 HPNEQTYISVLSACSHIGM-VEKGKSYFDLMVK 365
            PNE T+ S+L+ C+     + +GK +    +K
Sbjct: 491 KPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 189/383 (49%), Gaps = 12/383 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H + I  G  +D      L++ Y K       RKVFDEM +R +V+W T+I  Y  
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    E + LF+ M  EG  P S FT ++ L   A +       Q+H   +K  +D+ + 
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNS-FTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIP 230

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  +L+++Y KCG +  A  +F+    ++ VTW+SM++G+  N L  EAL +F   ++  
Sbjct: 231 VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNY 290

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  ++ + +SVI  CA L  L   +Q+H  + K GF  +    ++L+  Y+KC  ++DA 
Sbjct: 291 VRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDAL 350

Query: 292 FVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            +F  I    NVV W  MISGF ++    E + LF +M++ G+ PNE TY  +L+A   I
Sbjct: 351 RLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVI 410

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
              E         V + N   +    + ++D   + G + EA  +   +  D     W +
Sbjct: 411 SPSE-----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSA 464

Query: 411 LLASCRNYRNLELAEIAAKQLFG 433
           +LA        E    AA ++FG
Sbjct: 465 MLAGYAQTGETE----AAIKMFG 483



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 150/265 (56%), Gaps = 3/265 (1%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG-KTPYSEFTVSSVLCAC 145
           A  +FD+ P R   S+ +++  ++ +GR QEA  LF+N+ R G +   S F  SSVL   
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIF--SSVLKVS 103

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           A   D    +QLH   +K     +V VGT+L+D Y K     D  +VF+ M ERN VTW+
Sbjct: 104 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWT 163

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           ++++G+ +N + +E L LF R Q  G + N FT ++ +   A      +G QVH V+ K 
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 223

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G    +  ++SL+++Y KCG V  A  +F   E K+VV WN+MISG++ +   +E + +F
Sbjct: 224 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 283

Query: 326 EKMQQAGLHPNEQTYISVLSACSHI 350
             M+   +  +E ++ SV+  C+++
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANL 308



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 125/271 (46%), Gaps = 33/271 (12%)

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
           +A  +F+  P R+  ++ S++ GF ++   +EA  LF     LG+E +    SSV+   A
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            L   + G+Q+H    K GF  ++   +SLVD Y K     D   VF  ++E+NVV W T
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG--------KSY 359
           +ISG++R++ + EV+ LF +MQ  G  PN  T+ + L   +  G+  +G        K+ 
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224

Query: 360 FDLMVKQHNVLPNVF----------------------HYSCMIDILGRAGLIHEAYDLIL 397
            D  +   N L N++                       ++ MI      GL  EA  +  
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284

Query: 398 NMPFD---ATASMWGSLLASCRNYRNLELAE 425
           +M  +    + S + S++  C N + L   E
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKELRFTE 315


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/593 (38%), Positives = 341/593 (57%), Gaps = 46/593 (7%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK--VFDEMPQRCIVSWNTIIGSYT 110
           K  HA II  GL+  +     LI   +K  +  G+    VF ++       W  +I  Y 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA-LKAAMDRN 169
             G   E+   +  M R+G  P S FT S++  AC A  ++   KQ+H    L      +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVS-FTFSALFKACGAALNMDLGKQVHAQTILIGGFASD 177

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVT-------------------------- 203
           ++VG +++D+Y KCG +  A +VF+ M ER+ V+                          
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPL 237

Query: 204 -----WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
                W++MV G+ QN   +EAL  F++ Q +G+E ++ T++ VI ACA L A+     +
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297

Query: 259 HAVLCKTGFG--SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
             +  ++GFG   N+   S+L+DMY+KCG   +AY VF  ++E+NV  +++MI G++ H 
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R+   + LF  M +  + PN+ T+I +LSACSH G+VE+G+  F  M K   V P+  HY
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           +CM+D+LGRAG + EA DL+  MP +    +WG+LL +CR + N ++A+IAA +LF +EP
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEP 477

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---------GKRNH 487
           +  GN++LLSNIYA+  RWEEV++ RK+IR+   KK    SW E K         G   H
Sbjct: 478 NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTH 537

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
           PR +EI   L++L+E ++  GYKP      +D+ D  K+ +L+ HSEKLAL +GL+C   
Sbjct: 538 PRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEA 597

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G  I+IMKN+RIC DCH+ M  AS I GRE IVRD  RFHHF NG+CSC +FW
Sbjct: 598 GDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 143/318 (44%), Gaps = 37/318 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  A  ++C        GK  HA+ I +G   +D    N +I+ Y KCG +  ARKVFDE
Sbjct: 144 TFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDE 203

Query: 94  MPQRCIVSWNTII-------------------------------GSYTTNGREQEAVALF 122
           M +R +VSW  +I                                 Y  NGR +EA+  F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYF 263

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR--NVFVGTALLDVY 180
             M   G     E T++ V+ ACA    V     +   A ++      NV VG+AL+D+Y
Sbjct: 264 QKMQDVGMET-DEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMY 322

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           +KCG   +A +VFE M ERN  ++SSM+ G+  +     AL LF       +  N+ T  
Sbjct: 323 SKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFI 382

Query: 241 SVICACAGLAALIQGKQVHAVLCK-TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE- 298
            ++ AC+    + QG+Q+ A + K  G   +    + +VD+  + GC+ +A  +   +  
Sbjct: 383 GILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM 442

Query: 299 EKNVVLWNTMISGFSRHA 316
           E N  +W  ++     H 
Sbjct: 443 EPNGGVWGALLGACRIHG 460



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 40/297 (13%)

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI--SDASRV 192
           E+ + S+L  C     +   KQ+H   ++  + +  +V T L+ +  K  +   S    V
Sbjct: 42  EWRLMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLV 98

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F  +   N   W++M+ G+    L  E+   + R +  G+    FT S++  AC     +
Sbjct: 99  FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158

Query: 253 IQGKQVHA-VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV--------- 302
             GKQVHA  +   GF S+++  +S++D+Y KCG +  A  VF  + E++V         
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218

Query: 303 ----------------------VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
                                 V W  M++G++++ R  E +  F+KMQ  G+  +E T 
Sbjct: 219 YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILGRAGLIHEAYDL 395
             V+SAC+ +G V+      D+  ++    P  NV   S +ID+  + G   EAY +
Sbjct: 279 AGVISACAQLGAVKHANWIRDI-AERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKV 334



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 3/173 (1%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY--FVFSGIEEKNVVLWNTMISG 311
           Q KQVHA + + G     +  + L+ M  K    + +Y   VF  +   N  LW  MI G
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           ++      E    + +M++ G+ P   T+ ++  AC     ++ GK      +       
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           +++  + MID+  + G +  A  +   M      S W  L+ +   Y ++E A
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS-WTELIVAYAKYGDMESA 228


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 334/553 (60%), Gaps = 10/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA ++  G   D + +N L+  Y++   I  A  +FD +  R   +W+ ++G +   G  
Sbjct: 23  HAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDH 82

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
               A F  +LR G TP   +T+  V+  C  + D+   + +H   LK  +  + FV  +
Sbjct: 83  AGCYATFRELLRCGVTP-DNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCAS 141

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D+YAKC ++ DA R+FE M  ++ VTW+ M+  +     YE +L+LF R +  G+  +
Sbjct: 142 LVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREEGVVPD 200

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           +  + +V+ ACA L A+ + +  +  + + GF  ++   ++++DMYAKCG V  A  VF 
Sbjct: 201 KVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFD 260

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            ++EKNV+ W+ MI+ +  H R  + + LF  M    + PN  T++S+L ACSH G++E+
Sbjct: 261 RMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEE 320

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G  +F+ M ++H V P+V HY+CM+D+LGRAG + EA  LI  M  +    +W +LL +C
Sbjct: 321 GLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGAC 380

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R +  +ELAE AA  L  ++P N G+++LLSNIYA   +WE+VA+ R ++   ++KK   
Sbjct: 381 RIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPG 440

Query: 476 KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            +W+E+         G R+HP+  EIY  L  L+++++  GY P+T+  L DVE+  KQE
Sbjct: 441 WTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQE 500

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           +L  HSEKLA+ FGL+ +  G PIRI KNLR+CGDCH+F K  S I  R  IVRD NRFH
Sbjct: 501 MLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFH 560

Query: 588 HFTNGSCSCWDFW 600
           HF +G+CSC D+W
Sbjct: 561 HFNDGTCSCGDYW 573



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 139/266 (52%), Gaps = 3/266 (1%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           R+VF  +Q+H   +     +++ +   LL  YA+   I DA  +F+ +  R+  TWS MV
Sbjct: 14  RNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMV 73

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            GF +   +      FR     G+  + +T+  VI  C     L  G+ +H V+ K G  
Sbjct: 74  GGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLL 133

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           S+ F  +SLVDMYAKC  V DA  +F  +  K++V W  MI  ++    + E ++LF++M
Sbjct: 134 SDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRM 192

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           ++ G+ P++   ++V++AC+ +G + + +   D +V+    L +V   + MID+  + G 
Sbjct: 193 REEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSL-DVILGTAMIDMYAKCGS 251

Query: 389 IHEAYDLILNMPFDATASMWGSLLAS 414
           +  A ++   M      S W +++A+
Sbjct: 252 VESAREVFDRMKEKNVIS-WSAMIAA 276



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 175/338 (51%), Gaps = 13/338 (3%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           TL   +++C R+R  ++ G+V H  ++  GL +D      L++ Y+KC ++  A+++F+ 
Sbjct: 103 TLPFVIRTC-RDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFER 161

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + +V+W  +IG+Y  +    E++ LF  M  EG  P  +  + +V+ ACA    +  
Sbjct: 162 MLSKDLVTWTVMIGAY-ADCNAYESLVLFDRMREEGVVP-DKVAMVTVVNACAKLGAMHR 219

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +  + + ++     +V +GTA++D+YAKCG +  A  VF+ M E+N ++WS+M+A +  
Sbjct: 220 ARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGY 279

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMF 272
           +   ++A+ LF       +  N+ T  S++ AC+    + +G +  +++  +     ++ 
Sbjct: 280 HGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVK 339

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             + +VD+  + G + +A  +   +  EK+  LW+ ++     H++    M L EK   +
Sbjct: 340 HYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSK----MELAEKAANS 395

Query: 332 GLHPNEQT---YISVLSACSHIGMVEKGKSYFDLMVKQ 366
            L    Q    Y+ + +  +  G  EK   + D+M ++
Sbjct: 396 LLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQR 433


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/639 (36%), Positives = 347/639 (54%), Gaps = 73/639 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L SCA   A   G+  H+ ++ +GL++    +N ++N Y KCG    AR VF+ M
Sbjct: 164 TLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERM 223

Query: 95  PQR-------------------------------CIVSWNTIIGSYTTNGREQEAVALFI 123
           P+R                                IVSWN +I  Y  NG   +A+  F 
Sbjct: 224 PERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFS 283

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM----------------- 166
            ML        EFT++SVL ACA    V   KQ+H + L++ M                 
Sbjct: 284 RMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKS 343

Query: 167 ----------------DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                           D NV   TALL+ Y K G +  A  +F+ M  R+ V W++M+ G
Sbjct: 344 GSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVG 403

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN   +EA+ LFR     G E N +T+++V+  CA LA L  GKQ+H    ++    +
Sbjct: 404 YEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQS 463

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
              ++S+V MYA+ G +  A  VF  +   K  V W +MI   ++H    + + LFE+M 
Sbjct: 464 SSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEML 523

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           + G+ P+  T++ VLSAC+H+G V++GK YF  +  +H ++P + HY+CM+D+L RAGL 
Sbjct: 524 RVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLF 583

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA + I  MP +  A  WGSLL++CR ++N +LAE+AA++L  ++P N+G +  LSN+Y
Sbjct: 584 SEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVY 643

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLV 501
           +A  RW + A+  K  +D  VKKE   SW  I  + +        HP+   +Y    K+ 
Sbjct: 644 SACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMW 703

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
           +++KK G+ P+ +  LHDV+D  K+E+L  HSEKLA+ FGL+       +RIMKNLR+C 
Sbjct: 704 DDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCN 763

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH+ +KF S++A RE I+RD  RFHHF +G CSC D+W
Sbjct: 764 DCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 194/441 (43%), Gaps = 104/441 (23%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL-------NN------ 66
           A A  +A A A++       LQ C     P  G+  HA+ +  GL       NN      
Sbjct: 10  AGAPRTAMAAASDSDHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYA 69

Query: 67  -------------------------DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
                                    +  T N L++ Y+K G ++ AR VF EMP+R  VS
Sbjct: 70  GPAAGGGGGFREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVS 129

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           W  ++      GR  EA+ +F++M+ +G +P ++FT+++VL +CAA       +++H F 
Sbjct: 130 WTVMVVGLNRVGRFGEAIKMFLDMVTDGLSP-TQFTLTNVLSSCAATEARGVGRKVHSFV 188

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV------------- 208
           +K  +   V V  ++L++Y KCG    A  VFE MPER+  +W++MV             
Sbjct: 189 VKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLAL 248

Query: 209 ------------------AGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGL 249
                             AG+ QN L  +AL  F R      +  ++FTI+SV+ ACA L
Sbjct: 249 SLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANL 308

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV---------------- 293
             +  GKQVHA + ++         ++L+ MYAK G V +A  V                
Sbjct: 309 GMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTA 368

Query: 294 -----------------FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
                            F  +  ++VV W  MI G+ ++  + E M LF  M ++G  PN
Sbjct: 369 LLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPN 428

Query: 337 EQTYISVLSACSHIGMVEKGK 357
             T  +VLS C+ +  +E GK
Sbjct: 429 SYTVAAVLSVCASLACLEYGK 449



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 131/261 (50%), Gaps = 35/261 (13%)

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
           A  RNVF   +LL +YAK G ++DA  VF  MPER+ V+W+ MV G  +   + EA+ +F
Sbjct: 91  AAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMF 150

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
                 GL   QFT+++V+ +CA   A   G++VH+ + K G  S +  A+S+++MY KC
Sbjct: 151 LDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKC 210

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM---------------Q 329
           G    A  VF  + E++V  WN M+S  +   R    + LFE M                
Sbjct: 211 GDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYN 270

Query: 330 QAGLH-----------------PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           Q GL+                 P+E T  SVLSAC+++GMV  GK     +++    +P 
Sbjct: 271 QNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR--MPY 328

Query: 373 VFHYS-CMIDILGRAGLIHEA 392
           +   +  +I +  ++G +  A
Sbjct: 329 IGQVTNALISMYAKSGSVENA 349


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 325/553 (58%), Gaps = 10/553 (1%)

Query: 56   HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
            H   +  GL +D    +  I+ Y +CG I  AR +FD++  R + +WN +IG        
Sbjct: 547  HKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCG 606

Query: 116  QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +EA++LF+ M REG  P +  T  ++L A   +  +   K++H  A  A +  ++ VG A
Sbjct: 607  REALSLFLQMQREGFIPDAT-TFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNA 664

Query: 176  LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
            L+  Y+KCG +  A +VF+ M ERN  TW+ M+ G  Q+    +A   F +    G+  +
Sbjct: 665  LVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPD 724

Query: 236  QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
              T  S++ ACA   AL   K+VH      G  S++   ++LV MYAKCG + DA  VF 
Sbjct: 725  ATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFD 784

Query: 296  GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
             + E++V  W  MI G ++H R +E +  F KM+  G  PN  +Y++VL+ACSH G+V++
Sbjct: 785  DMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDE 844

Query: 356  GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
            G+  F  M + + + P + HY+CM+D+LGRAGL+ EA   ILNMP +   + WG+LL +C
Sbjct: 845  GRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGAC 904

Query: 416  RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
              Y NLE+AE AAK+   ++P +A  ++LLSNIYAA  +WE+    R +++   ++KE  
Sbjct: 905  VTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPG 964

Query: 476  KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            +SW+E+         G  +HP   EIY++L  L+E +K  GY P+T   L + +   K++
Sbjct: 965  RSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQ 1024

Query: 528  LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
             L  HSEKLA+ +GLM      PIR+ KNLR+C DCH+  KF S+I GRE + RD  RFH
Sbjct: 1025 ALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFH 1084

Query: 588  HFTNGSCSCWDFW 600
            HF +G CSC D+W
Sbjct: 1085 HFKDGVCSCGDYW 1097



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 169/296 (57%), Gaps = 3/296 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA II  G  +D      L+N Y KCG I  A+ +FD+M +R ++SW  +IG    
Sbjct: 238 GKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAH 297

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            GR QEA  LF+ M REG  P S +T  S+L A A+   +   K++H  A+ A +  ++ 
Sbjct: 298 YGRGQEAFHLFLQMQREGFIPNS-YTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG AL+ +YAK G I DA  VF+ M ER+  +W+ M+ G  Q+   +EA  LF + Q  G
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG 416

Query: 232 LEYNQFTISSVI--CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
              N  T  S++   A A  +AL   K VH    + GF S++   ++L+ MYAKCG + D
Sbjct: 417 CLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDD 476

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
           A  VF G+ +++V+ WN M+ G +++    E   +F +MQQ GL P+  TY+S+L+
Sbjct: 477 ARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 170/309 (55%), Gaps = 1/309 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ C ++   +  K  H  II  G+  +   +N L+  Y +CG +  AR+VFD++ ++ I
Sbjct: 125 LQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNI 184

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             W T+IG Y   G  ++A+ ++  M +E   P +E T  S+L AC    ++   K++H 
Sbjct: 185 YIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQP-NEITYLSILKACCCPVNLKWGKKIHA 243

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +++    +V V TAL+++Y KCG I DA  +F+ M ERN ++W+ M+ G       +E
Sbjct: 244 HIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQE 303

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A  LF + Q  G   N +T  S++ A A   AL   K+VH+     G   ++   ++LV 
Sbjct: 304 AFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVH 363

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAK G + DA  VF G+ E+++  W  MI G ++H R  E   LF +MQ+ G  PN  T
Sbjct: 364 MYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTT 423

Query: 340 YISVLSACS 348
           Y+S+L+A +
Sbjct: 424 YLSILNASA 432



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 157/545 (28%), Positives = 244/545 (44%), Gaps = 74/545 (13%)

Query: 8   KHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
           +  F   S++  +I +A+A+A A E                    K  H+  +  GL  D
Sbjct: 313 REGFIPNSYTYVSILNANASAGALEWV------------------KEVHSHAVNAGLALD 354

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
               N L++ Y+K G I  AR VFD M +R I SW  +IG    +GR QEA +LF+ M R
Sbjct: 355 LRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQR 414

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            G  P     +S +  +  A     E  K +H  A +A    ++ +G AL+ +YAKCG I
Sbjct: 415 NGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSI 474

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            DA  VF+ M +R+ ++W++M+ G  QN    EA  +F + Q  GL  +  T  S++   
Sbjct: 475 DDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTH 534

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
               AL    +VH    +TG  S+    S+ + MY +CG + DA  +F  +  ++V  WN
Sbjct: 535 GSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWN 594

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA-------------------- 346
            MI G ++     E + LF +MQ+ G  P+  T+I++LSA                    
Sbjct: 595 AMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDA 654

Query: 347 --------------CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
                          S  G V+  K  FD MV++     NV  ++ MI  L + G  H+A
Sbjct: 655 GLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVER-----NVTTWTMMIGGLAQHGCGHDA 709

Query: 393 YDLILNMPFDA---TASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPD-NAGNHLLLS 446
           +   L M  +     A+ + S+L++C +   LE  +         G+  D   GN L+  
Sbjct: 710 FSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALV-- 767

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKK 506
           ++YA   +   +  AR +  D  V+++     V I G   H R  E      K    MK 
Sbjct: 768 HMYA---KCGSIDDARSVF-DDMVERDVFSWTVMIGGLAQHGRGLEALDFFVK----MKS 819

Query: 507 LGYKP 511
            G+KP
Sbjct: 820 EGFKP 824



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 163/319 (51%), Gaps = 41/319 (12%)

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           ++AVA+    +++G      F+  ++L  C  + D+   KQ+HV  +K+ M++N++V   
Sbjct: 100 KDAVAMLKIRVQQG-IAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LL VY +CG +  A +VF+ + ++N   W++M+ G+ +    E+A+ ++ + +    + N
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           + T  S++ AC     L  GK++HA + ++GF S++   ++LV+MY KCG + DA  +F 
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE- 354
            + E+NV+ W  MI G + + R  E   LF +MQ+ G  PN  TY+S+L+A +  G +E 
Sbjct: 279 KMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEW 338

Query: 355 ----------------------------------KGKSYFDLMVKQHNVLPNVFHYSCMI 380
                                               +  FD M ++     ++F ++ MI
Sbjct: 339 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTER-----DIFSWTVMI 393

Query: 381 DILGRAGLIHEAYDLILNM 399
             L + G   EA+ L L M
Sbjct: 394 GGLAQHGRGQEAFSLFLQM 412



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 11/187 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + +T  + L +CA   A    K  H   +  GL +D    N L++ Y+KCG I  AR VF
Sbjct: 724 DATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVF 783

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+M +R + SW  +IG    +GR  EA+  F+ M  EG  P + ++  +VL AC+    V
Sbjct: 784 DDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKP-NGYSYVAVLTACSHAGLV 842

Query: 152 FECKQLHV-----FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            E ++  +     + ++  M+      T ++D+  + GL+ +A     +MP E ++  W 
Sbjct: 843 DEGRRQFLSMTQDYGIEPTMEHY----TCMVDLLGRAGLLEEAELFILNMPIEPDDAPWG 898

Query: 206 SMVAGFV 212
           +++   V
Sbjct: 899 ALLGACV 905


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/538 (39%), Positives = 328/538 (60%), Gaps = 9/538 (1%)

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
           SN  I  Y+KCG ++ A KVF  +  + + SWN +IG +  NG  ++A+ L   M   G+
Sbjct: 388 SNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ 447

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
            P   FT+SS+L ACA  + +   K++H + L+  ++ + FVGT+LL  Y  CG  S A 
Sbjct: 448 QP-DWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSAR 506

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
            +F+ M ++N V+W++M++G+ QN L  E+L LFR++   G++ ++  I SV  AC+ L+
Sbjct: 507 VLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLS 566

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           AL  GK+ H  + K     + F   S++DMYAK GC+ ++  VF G+++KNV  WN +I 
Sbjct: 567 ALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIV 626

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
               H    E + L+E+M++ G  P+  TYI +L AC H G+VE+G  YF  M   + + 
Sbjct: 627 AHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIE 686

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P + HY+C+ID+L RAG + +A  L+  MP +A   +W SLL SCR +  LE+ E  AK+
Sbjct: 687 PKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKK 746

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK------ 484
           L  +EPD A N++LLSN+YA   +W+ V R R+++++  ++K+   SW+E+ G+      
Sbjct: 747 LLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVV 806

Query: 485 --RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
                P+ AEI     +L E + ++GYKP T   LH+V +  K ++L  HSEKLA++FGL
Sbjct: 807 GDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGL 866

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +    G  +RI KNLRIC DCH+  K  S+   RE +VRD  RFHHF +G CSC D+W
Sbjct: 867 LKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 201/384 (52%), Gaps = 4/384 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ T+   L  CA E     G   H   + +GL+ + + +N ++  YSKCG ++ A+  F
Sbjct: 247 DVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSF 306

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACAAKRD 150
            +   + +VSWNT+I +++  G   EA  L   M  +G+    +E T+ +VL AC  K  
Sbjct: 307 VKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQ 366

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K+LH ++ +    ++V +  A +  YAKCG ++ A +VF  + ++   +W++++ G
Sbjct: 367 LRSLKELHGYSFRHCF-QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGG 425

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
             QN    +AL L  +    G + + FTISS++ ACA L +L  GK++H  + + G  ++
Sbjct: 426 HAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETD 485

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            F  +SL+  Y  CG    A  +F  +++KN+V WN MISG+S++    E + LF K   
Sbjct: 486 FFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLS 545

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+  +E   +SV  ACS +  +  GK     ++K      + F    +ID+  ++G I 
Sbjct: 546 EGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQT-EDAFVGCSIIDMYAKSGCIK 604

Query: 391 EAYDLILNMPFDATASMWGSLLAS 414
           E+  +   +  D   + W +++ +
Sbjct: 605 ESRKVFDGLK-DKNVASWNAIIVA 627



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 169/334 (50%), Gaps = 7/334 (2%)

Query: 21  IASASANANATELSTLQAT---LQSCARERAPVRGKVCHAKII-GMGLNNDTLTSNILIN 76
           I S S NA    L   +A    LQ+C  ++    G+  H  +       ND + +  LI 
Sbjct: 28  IQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIK 87

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y+ CG    +R VFD M  + ++ WN ++  YT NG   + V +F++++ +       F
Sbjct: 88  MYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNF 147

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T  SV+ AC    DV   + +H   +K  +  +VFVG AL+ +Y KCG + +A +VF+ M
Sbjct: 148 TFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFM 207

Query: 197 PERNEVTWSSMVAGFVQNELYEEAL-ILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           PE N V+W+SM+  F +N    ++  +L       GL  +  T+ +++  CAG   +  G
Sbjct: 208 PETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIG 267

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
             +H +  K G    +   +++V MY+KCG + +A   F     KNVV WNTMIS FS  
Sbjct: 268 MGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLE 327

Query: 316 ARSVEVMILFEKMQQAG--LHPNEQTYISVLSAC 347
               E   L ++MQ  G  +  NE T ++VL AC
Sbjct: 328 GDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 170/325 (52%), Gaps = 3/325 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + +++C        G+V H  +I MGL  D    N L+  Y KCG +  A KVFD M
Sbjct: 148 TFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFM 207

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  +VSWN++I +++ NG  +++  L + ML E        TV ++L  CA + +V   
Sbjct: 208 PETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIG 267

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H  A+K  +   V V  A++ +Y+KCG +++A   F     +N V+W++M++ F   
Sbjct: 268 MGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLE 327

Query: 215 ELYEEALILFRRAQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
               EA  L +  Q+ G E   N+ TI +V+ AC     L   K++H    +  F  ++ 
Sbjct: 328 GDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF-QHVE 386

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +++ +  YAKCG +  A  VF GI +K V  WN +I G +++    + + L  +M  +G
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG 446

Query: 333 LHPNEQTYISVLSACSHIGMVEKGK 357
             P+  T  S+L AC+H+  ++ GK
Sbjct: 447 QQPDWFTISSLLLACAHLKSLQYGK 471



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           +   +C++  A   GK  H  ++      D      +I+ Y+K G I  +RKVFD +  +
Sbjct: 557 SVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDK 616

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC--- 154
            + SWN II ++  +G  +EA+ L+  M + G+ P   FT   +L AC     V E    
Sbjct: 617 NVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMP-DRFTYIGILMACGHAGLVEEGLKY 675

Query: 155 -KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMV 208
            K++  F L   ++  +     L+D+ A+ G + DA R+   MPE  +   WSS++
Sbjct: 676 FKEMQNFNL---IEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLL 728


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 341/571 (59%), Gaps = 9/571 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L SCA  +   R     +   G+ L N  +   ++    S C  +S A ++F ++   
Sbjct: 44  ALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNP 103

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            I +WNT+I  Y  +     A+ L+  M      P +  T   +L A A   DV E +++
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTH-TYPFLLKAIAKLMDVREGEKV 162

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A++   +  VFV   L+ +YA CG    A ++FE M ERN VTW+S++ G+  N   
Sbjct: 163 HSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRP 222

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EAL LFR   + G+E + FT+ S++ ACA L AL  G++ H  + K G   N+ A ++L
Sbjct: 223 NEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNAL 282

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +D+YAKCG +  A+ VF  +EEK+VV W ++I G + +    E + LF+++++ GL P+E
Sbjct: 283 LDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSE 342

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VL ACSH GMV++G  YF  M +++ ++P + HY CM+D+LGRAGL+ +A++ I 
Sbjct: 343 ITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQ 402

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           NMP    A +W +LL +C  + +L L E+A  QL  +EP ++G+++LLSN+YA+ +RW +
Sbjct: 403 NMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSD 462

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           V + R+ +    VKK    S VE++        G R+HP+  EIY KL ++ + +K  GY
Sbjct: 463 VHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGY 522

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P   + L D+E+  K+  L +HSEK+A+ F L+    G+PIR++KNLR+C DCH  +K 
Sbjct: 523 VPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKL 582

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++  RE +VRD +RFHHF +G CSC D+W
Sbjct: 583 ISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 17/207 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA   A   G+  H  ++ +GL+ +    N L++ Y+KCG I  A KVFDEM
Sbjct: 243 TMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM 302

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA------AK 148
            ++ +VSW ++I     NG  +EA+ LF  + R+G  P SE T   VL AC+        
Sbjct: 303 EEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMP-SEITFVGVLYACSHCGMVDEG 361

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
            D F+ +    + +   ++        ++D+  + GL+  A    ++MP + N V W ++
Sbjct: 362 FDYFK-RMKEEYGIVPKIEHY----GCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 416

Query: 208 V-AGFVQNELYEEALILFRRAQVLGLE 233
           + A  +   L   AL    RAQ+L LE
Sbjct: 417 LGACTIHGHL---ALGEVARAQLLQLE 440


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/570 (39%), Positives = 339/570 (59%), Gaps = 44/570 (7%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           LI  Y + G ++GAR++ D M ++  ++WN +I  Y  +G  ++A+ LF  M   G    
Sbjct: 229 LITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG-VQV 287

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAM--DRNVF--VGTALLDVYAKCGLISDA 189
            E T +SV+ ACA        KQ+H + LK  +  DR+    VG  L+ +Y K G +  A
Sbjct: 288 DESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGA 347

Query: 190 SRV-------------------------------FESMPERNEVTWSSMVAGFVQNELYE 218
            ++                               F  MPE+N +TW+ M++G  QN   E
Sbjct: 348 RKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGE 407

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           +AL LF + ++ G E N +  +  I AC+ L AL  G+Q+HA +   G  S +   ++++
Sbjct: 408 QALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMI 467

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            MYA+CG V  A  +F  +   + V WN+MI+   +H   V+ + L+E+M + G+ P+ +
Sbjct: 468 TMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRR 527

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+++VLSACSH G+VE+G  YF+ M++ + + P   HY+ MID+  RAG   +A ++I +
Sbjct: 528 TFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDS 587

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MPF+A A +W +LLA CR + N++L   AA++LF + P + G ++LLSN+YA+  RW +V
Sbjct: 588 MPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDV 647

Query: 459 ARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYK 510
           AR RKL+RD  VKKE + SW E++ K +        HP +  IY+ LEKL  EMKK+GY 
Sbjct: 648 ARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYI 707

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
           P+T++ LHD+E   K+  L  HSEKLA+ FGLM L  G  +R+ KNLRICGDCH+ +KF 
Sbjct: 708 PDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFM 767

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S++ GRE +VRD  RFHHF NG CSC ++W
Sbjct: 768 SKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 206/454 (45%), Gaps = 89/454 (19%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           D +    LI  YS  G +  AR++F+E P   R  V +N +I  Y+       A+ LF  
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 125 MLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M      P  +FT +SVL A      D  +C Q+H   +K  ++    V  ALL VY KC
Sbjct: 138 MRWANFQP-DDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKC 196

Query: 184 GL---------ISDASRVFESMPERNEVTWSSMVAGFVQNE------------------- 215
                      ++ A ++F+ MP+RNE  W++++ G+V+N                    
Sbjct: 197 ASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIA 256

Query: 216 ------------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
                       L+E+AL LFR+ ++LG++ ++ T +SVI ACA     + GKQVHA + 
Sbjct: 257 WNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYIL 316

Query: 264 KTGFGSN----MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           K     +    +   ++L+ +Y K G V  A  +F  +  K+++ WNT++SG+    R  
Sbjct: 317 KNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRME 376

Query: 320 E-----------------VMI--------------LFEKMQQAGLHPNEQTYISVLSACS 348
           E                 VMI              LF +M+  G  PN+  +   ++ACS
Sbjct: 377 EAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACS 436

Query: 349 HIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
            +G +E G+     +V   H+   +V   + MI +  R G++  A  + L MPF    S 
Sbjct: 437 VLGALENGRQLHAQIVHLGHDSTLSVG--NAMITMYARCGIVEAARTMFLTMPFVDPVS- 493

Query: 408 WGSLLASCRNY----RNLELAEIAAKQLFGMEPD 437
           W S++A+   +    + +EL E   K+  G+ PD
Sbjct: 494 WNSMIAALGQHGHGVKAIELYEQMLKE--GILPD 525



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 147/320 (45%), Gaps = 38/320 (11%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNND----TLTSNILINFYSKCGLISGARK 89
           ST  + + +CA     + GK  HA I+   LN D        N LI  Y K G + GARK
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARK 349

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEA------------------------------- 118
           +F EMP + I++WNT++  Y   GR +EA                               
Sbjct: 350 IFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQA 409

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           + LF  M  +G  P +++  +  + AC+    +   +QLH   +    D  + VG A++ 
Sbjct: 410 LKLFNQMKLDGYEP-NDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMIT 468

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +YA+CG++  A  +F +MP  + V+W+SM+A   Q+    +A+ L+ +    G+  ++ T
Sbjct: 469 MYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRT 528

Query: 239 ISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
             +V+ AC+    + +G +  +++L   G        + ++D++ + G   DA  V   +
Sbjct: 529 FLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSM 588

Query: 298 E-EKNVVLWNTMISGFSRHA 316
             E    +W  +++G   H 
Sbjct: 589 PFEARAPIWEALLAGCRTHG 608


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 334/542 (61%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ NI+++ Y++ G +  AR++FD  P R + +W  ++  Y  NG  +EA  +F  M 
Sbjct: 223 DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++     +++ A   +R + E K+L  F +     RNV     +L  YA+ G++
Sbjct: 283 ERNAVSWN-----AMVAAYIQRRMMDEAKEL--FNMMPC--RNVASWNTMLTGYAQAGML 333

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A  VF++MP+++ V+W++M+A + Q    EE L LF      G   N+   + V+  C
Sbjct: 334 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  G Q+H  L + G+G   F  ++L+ MY KCG + DA   F  +EE++VV WN
Sbjct: 394 ADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN 453

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    E + +F+ M+     P++ T + VL+ACSH G+VEKG SYF  M   
Sbjct: 454 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHD 513

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V     HY+CMID+LGRAG + EA+DL+ +MPF+  ++MWG+LL + R +RN EL   
Sbjct: 514 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRS 573

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
           AA+++F +EP+NAG ++LLSNIYA++ +W +  + R ++ +  VKK    SW+E++ K +
Sbjct: 574 AAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVH 633

Query: 487 --------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                   HP   +IY+ LE L   MKK GY   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 634 TFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAV 693

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            +G++ + PG PIR++KNLR+CGDCH+  K+ S I GR  ++RD NRFHHF  GSCSC D
Sbjct: 694 AYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGD 753

Query: 599 FW 600
           +W
Sbjct: 754 YW 755



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 186/380 (48%), Gaps = 34/380 (8%)

Query: 40  LQSCARERA----PVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L+S AR+R+    P  G    +   G  L  + + SN  I  + + G ++ A ++F  MP
Sbjct: 7   LRSAARQRSHRPPPAAGDASSSSSSGR-LEPEVIRSNKAITAHMRAGRVADAERLFAAMP 65

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R   ++N ++  Y+ NGR   A +LF  + R        ++ +++L A A    + + +
Sbjct: 66  RRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP-----DNYSYNTLLHALAVSSSLADAR 120

Query: 156 QL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            L     ++ ++  NV + +     +A  GL+S A   F+  PE++ V+W+ M+A +V+N
Sbjct: 121 GLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA  LF        E++  + ++++        + + +++   +     G ++ + 
Sbjct: 176 GRVEEARGLFNSRT----EWDAISWNALMSGYVQWGKMSEARELFDRMP----GRDVVSW 227

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + +V  YA+ G +V+A  +F     ++V  W  ++SG++++    E   +F+ M +    
Sbjct: 228 NIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER--- 284

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            N  ++ ++++A     M+++ K  F++M  +     NV  ++ M+    +AG++ EA  
Sbjct: 285 -NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKA 338

Query: 395 LILNMPFDATASMWGSLLAS 414
           +   MP    A  W ++LA+
Sbjct: 339 VFDTMP-QKDAVSWAAMLAA 357



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S     L +CA   A   G   H ++I  G        N L+  Y KCG +  AR  F+E
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-----AK 148
           M +R +VSWNT+I  Y  +G  +EA+ +F +M+R   T   + T+  VL AC+      K
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIF-DMMRTTSTKPDDITLVGVLAACSHSGLVEK 502

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
              +     H F + A  +      T ++D+  + G +++A  + + MP E +   W ++
Sbjct: 503 GISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGAL 558

Query: 208 VA 209
           + 
Sbjct: 559 LG 560


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/542 (38%), Positives = 337/542 (62%), Gaps = 9/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NILI    K G +  AR++FD+MP R + +WN ++   T  G +++++  F+ M 
Sbjct: 107 NVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMR 166

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG  P  EF + SV   CA   DV   +Q+H + +++ MD ++ VG +L  +Y +CG +
Sbjct: 167 REGMHP-DEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCL 225

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           ++   V  ++P    V++++ +AG  QN   E AL  F   + + +  +  T  S I  C
Sbjct: 226 AEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCC 285

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + LAAL QG+QVHA + K G    +   +SLV MY++CGC+ D+  V+ G    ++ L +
Sbjct: 286 SDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLS 345

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MIS    H +  + + LF++M   G  PNE T++++L ACSH G+ ++G  +F+LM K 
Sbjct: 346 AMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKT 405

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           +   P+V HY+C++D+LGR+G + EA  LIL+MP  A   +W +LL++C+  +N ++AE 
Sbjct: 406 YGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAER 465

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-- 484
            A+++   +P ++  ++LLSNI A ++RW +V   RK++R+ +++KE   SWVE KG+  
Sbjct: 466 IAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVH 525

Query: 485 ------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                 ++HPR  EI   L++++ ++++ GY P+     HD+ED  K+  L HHSEKLA+
Sbjct: 526 QFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAI 585

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            F  + L  GVPIR+MKNLR+C DCH  +K  S++ GRE +VRD++RFHHF +G CSC D
Sbjct: 586 AFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGD 645

Query: 599 FW 600
           +W
Sbjct: 646 YW 647



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 141/277 (50%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA     V G+  HA ++  G+++D    N L + Y +CG ++    V   +P
Sbjct: 177 LGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALP 236

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS+NT I   T NG  + A+  F +M+R  +      T  S +  C+    + + +
Sbjct: 237 SLTIVSFNTTIAGRTQNGDSEGALEYF-SMMRGVEVAPDVVTFVSAISCCSDLAALAQGQ 295

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   +KA +D+ V V T+L+ +Y++CG + D+ RV++     +    S+M++    + 
Sbjct: 296 QVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHG 355

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
              +A+ LF++    G E N+ T  +++ AC+      +G +   ++ KT GF  ++   
Sbjct: 356 QGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHY 415

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S     + V+W T++S
Sbjct: 416 NCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLS 452



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A ++ T  + +  C+   A  +G+  HA++I  G++        L++ YS+CG +  + +
Sbjct: 272 APDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSER 331

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           V+D      +   + +I +   +G+  +AV LF  M+  G  P +E T  ++L AC+   
Sbjct: 332 VYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEP-NEVTFLALLYACS--H 388

Query: 150 DVFECKQLHVFALKA---AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE-VTWS 205
              + + L  F L         +V     ++D+  + G + +A  +  SMP R + V W 
Sbjct: 389 SGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWK 448

Query: 206 SMVA 209
           ++++
Sbjct: 449 TLLS 452



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           S +  AC  +  L   +Q+HA    +G  ++ F  ++L+  YA  G +  A  +F GI +
Sbjct: 49  SHIFRACRAIPLL---RQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISK 105

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           +NV+ WN +I G  ++        LF+KM       N  T+ ++++  +++G+ E    +
Sbjct: 106 RNVMSWNILIGGCIKNGDLGSARELFDKMPTR----NVATWNAMVAGLTNVGLDEDSLQF 161

Query: 360 FDLMVKQHNVLPNVF 374
           F L +++  + P+ F
Sbjct: 162 F-LAMRREGMHPDEF 175


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 351/621 (56%), Gaps = 78/621 (12%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCG----LISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           HA  +  G    T  SN L++ YS+C     L+  ARKVFD++P++   SW T++  Y  
Sbjct: 172 HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVK 231

Query: 112 NG-----RE---------------------------QEAVALFINMLREGKTPYSEFTVS 139
           NG     +E                           QEA+ +   M+  G     EFT  
Sbjct: 232 NGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSG-IELDEFTYP 290

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           SV+ ACA  R +   KQ+H + L+   D +     +L+ +Y KCG  ++A  +FE MP +
Sbjct: 291 SVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK 349

Query: 200 NEVTWSSMVAGFV-------------------------------QNELYEEALILFRRAQ 228
           + V+W+++++G+V                               +N   EE L LF   +
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G E   +  S  I +CA L A   G+Q HA L K GF S++ A ++L+ MYAKCG V 
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVE 469

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A  VF  +   + V WN +I+   +H   VE + ++E+M + G+ P+  T+++VL+ACS
Sbjct: 470 EAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACS 529

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           H G+V++G+ YF+ M   + + P   HY+ +ID+L R+G   EA  +I ++PF  TA +W
Sbjct: 530 HAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIW 589

Query: 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
            +LL+ CR + N+EL  IAA +LFG+ P++ G ++LLSN+YAA  +WEEVAR RKL+RD 
Sbjct: 590 EALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDR 649

Query: 469 EVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            VKKE + SW+E++ +         +HP    +Y  L+ L +EM++LGY P+T   LHDV
Sbjct: 650 GVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDV 709

Query: 521 E-DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           E D  K+++L  HSEK+A+ FGLM L PG  IRI KNLR CGDCH+F +F S++  R+ I
Sbjct: 710 ESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDII 769

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           +RD  RFHHF NG CSC +FW
Sbjct: 770 LRDRKRFHHFRNGECSCGNFW 790



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 201/443 (45%), Gaps = 76/443 (17%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           D +    +++ Y   G I+ AR VF+E P   R  V +N +I  ++ N     A+ LF  
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 125 MLREGKTPYSEFTVSSVLCACA-AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M  EG  P  +FT +SVL   A    D  +C Q H  ALK+       V  AL+ VY++C
Sbjct: 139 MKHEGFKP-DDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRC 197

Query: 184 G----LISDASRVFESMPERNEVTWSSMVAGFVQN------------------------- 214
                L+  A +VF+ +PE++E +W++M+ G+V+N                         
Sbjct: 198 ASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAM 257

Query: 215 -------ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
                   LY+EAL + RR    G+E ++FT  SVI ACA    L  GKQVHA + +   
Sbjct: 258 ISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRED 317

Query: 268 GSNMFAASSLVDMYAKC-------------------------------GCVVDAYFVFSG 296
            S  F  +SLV +Y KC                               G + +A  +F  
Sbjct: 318 FSFHF-DNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           ++EKN++ W  MISG + +    E + LF  M++ G  P +  +   + +C+ +G    G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
           + +   +VK      ++   + +I +  + G++ EA  +   MP   + S W +L+A+  
Sbjct: 437 QQFHAQLVKI-GFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVS-WNALIAALG 494

Query: 417 NY-RNLELAEIAAKQL-FGMEPD 437
            +   +E  ++  + L  G+ PD
Sbjct: 495 QHGHGVEAVDVYEEMLKKGIRPD 517



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 157/349 (44%), Gaps = 47/349 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT---SNILINFYSKCGLISGARKVF 91
           T  + +++CA  R    GK  HA +    L  +  +    N L+  Y KCG  + AR +F
Sbjct: 288 TYPSVIRACANARLLQLGKQVHAYV----LRREDFSFHFDNSLVTLYYKCGKFNEARAIF 343

Query: 92  DEMPQRCIVSWNTIIGSYTT-------------------------------NGREQEAVA 120
           ++MP + +VSWN ++  Y +                               NG  +E + 
Sbjct: 344 EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 403

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           LF  M REG  P  ++  S  + +CA        +Q H   +K   D ++  G AL+ +Y
Sbjct: 404 LFSCMKREGFEP-CDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMY 462

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           AKCG++ +A +VF +MP  + V+W++++A   Q+    EA+ ++      G+  ++ T  
Sbjct: 463 AKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFL 522

Query: 241 SVICACAGLAALIQGKQVH---AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           +V+ AC+    + QG++       + +   G++ +A   L+D+  + G   +A  +   +
Sbjct: 523 TVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYA--RLIDLLCRSGKFSEAESIIESL 580

Query: 298 EEKNVV-LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
             K    +W  ++SG   H      +I  +K+   GL P       +LS
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKL--FGLIPEHDGTYMLLS 627



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 81/312 (25%)

Query: 176 LLDVYAK-------------------------------CGLISDASRVFESMP--ERNEV 202
           L+DVY K                                G I+ A  VFE  P   R+ V
Sbjct: 55  LIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTV 114

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI----QGKQV 258
            +++M+ GF  N     A+ LF + +  G + + FT +SV+   AGLA ++    Q  Q 
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL---AGLALVVDDEKQCVQF 171

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGC----VVDAYFVFSGIEEKN------------- 301
           HA   K+G G     +++LV +Y++C      +  A  VF  I EK+             
Sbjct: 172 HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVK 231

Query: 302 -------------------VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
                              +V +N MISG+       E + +  +M  +G+  +E TY S
Sbjct: 232 NGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLILNMPF 401
           V+ AC++  +++ GK     ++++ +     FH+ + ++ +  + G  +EA  +   MP 
Sbjct: 292 VIRACANARLLQLGKQVHAYVLRREDF---SFHFDNSLVTLYYKCGKFNEARAIFEKMPA 348

Query: 402 DATASMWGSLLA 413
               S W +LL+
Sbjct: 349 KDLVS-WNALLS 359


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 334/542 (61%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ NI+++ Y++ G +  AR++FD  P R + +W  ++  Y  NG  +EA  +F  M 
Sbjct: 223 DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++     +++ A   +R + E K+L  F +     RNV     +L  YA+ G++
Sbjct: 283 ERNAVSWN-----AMVAAYIQRRMMDEAKEL--FNMMPC--RNVASWNTMLTGYAQAGML 333

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A  VF++MP+++ V+W++M+A + Q    EE L LF      G   N+   + V+  C
Sbjct: 334 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  G Q+H  L + G+G   F  ++L+ MY KCG + DA   F  +EE++VV WN
Sbjct: 394 ADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN 453

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    E + +F+ M+     P++ T + VL+ACSH G+VEKG SYF  M   
Sbjct: 454 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHD 513

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V     HY+CMID+LGRAG + EA+DL+ +MPF+  ++MWG+LL + R +RN EL   
Sbjct: 514 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRS 573

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
           AA+++F +EP+NAG ++LLSNIYA++ +W +  + R ++ +  VKK    SW+E++ K +
Sbjct: 574 AAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVH 633

Query: 487 --------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                   HP   +IY+ LE L   MKK GY   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 634 TFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAV 693

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            +G++ + PG PIR++KNLR+CGDCH+  K+ S I GR  ++RD NRFHHF  GSCSC D
Sbjct: 694 AYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGD 753

Query: 599 FW 600
           +W
Sbjct: 754 YW 755



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 185/382 (48%), Gaps = 38/382 (9%)

Query: 40  LQSCARERA----PVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L+S AR+R+    P  G    +   G  L  + + SN  I  + + G ++ A ++F  MP
Sbjct: 7   LRSAARQRSHRPPPAAGDASSSSSSGR-LEPEVIRSNKAITAHMRAGRVADAERLFAAMP 65

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R   ++N ++  Y+ NGR   A +LF  + R        ++ +++L A A    + + +
Sbjct: 66  RRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP-----DNYSYNTLLHALAVSSSLADAR 120

Query: 156 QL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            L     ++ ++  NV + +     +A  GL+S A   F+  PE++ V+W+ M+A +V+N
Sbjct: 121 GLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHA-VLCKTGFGSNMF 272
              EEA  LF          N  T   VI   A ++  +Q GK   A  L     G ++ 
Sbjct: 176 GRVEEARGLF----------NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           + + +V  YA+ G +V+A  +F     ++V  W  ++SG++++    E   +F+ M +  
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER- 284

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              N  ++ ++++A     M+++ K  F++M  +     NV  ++ M+    +AG++ EA
Sbjct: 285 ---NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEA 336

Query: 393 YDLILNMPFDATASMWGSLLAS 414
             +   MP    A  W ++LA+
Sbjct: 337 KAVFDTMP-QKDAVSWAAMLAA 357



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 71/317 (22%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D++T N++I+ ++  GL+S AR  FD  P++  VSWN ++ +Y  NGR +EA  LF    
Sbjct: 130 DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF---- 185

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
              +T +                                   +V    AL+  Y + G +
Sbjct: 186 -NSRTEW-----------------------------------DVISWNALMSGYVQWGKM 209

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           S+A  +F+ MP R+ V+W+ MV+G+ +     EA  LF  A V  +    FT ++V+   
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGY 265

Query: 247 AGLAALIQGKQVHAVLCKTGFGS---------------------------NMFAASSLVD 279
           A    L + ++V   + +    S                           N+ + ++++ 
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLT 325

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
            YA+ G + +A  VF  + +K+ V W  M++ +S+   S E + LF +M + G   N   
Sbjct: 326 GYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSA 385

Query: 340 YISVLSACSHIGMVEKG 356
           +  VLS C+ I  +E G
Sbjct: 386 FACVLSTCADIAALECG 402



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S     L +CA   A   G   H ++I  G        N L+  Y KCG +  AR  F+E
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-----AK 148
           M +R +VSWNT+I  Y  +G  +EA+ +F +M+R   T   + T+  VL AC+      K
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIF-DMMRTTSTKPDDITLVGVLAACSHSGLVEK 502

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
              +     H F + A  +      T ++D+  + G +++A  + + MP E +   W ++
Sbjct: 503 GISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGAL 558

Query: 208 VA 209
           + 
Sbjct: 559 LG 560


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 341/576 (59%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  C +        + H  +I  GL  D   SN LIN Y+K G +  ARK F +M
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +VSWN+II +Y  N     A   F+ M   G  P    T+ S+    A  RD    
Sbjct: 378 FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP-DLLTLVSLASIVAQSRDCKNS 436

Query: 155 KQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           + +H F ++   +  +V +G A++D+YAK GL+  A +VFE +  ++ ++W++++ G+ Q
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQ 496

Query: 214 NELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N L  EA+ +++  +    +  NQ T  S++ A A + AL QG ++H  + KT    ++F
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVF 556

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A+ L+D+Y KCG +VDA  +F  + +++ V WN +IS    H  + + + LF +M   G
Sbjct: 557 VATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEG 616

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T++S+LSACSH G VE+GK  F LM +++ + P++ HY CM+D+LGRAG +  A
Sbjct: 617 VKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMA 675

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y  I +MP    AS+WG+LL +CR + N+EL + A+ +LF ++  N G ++LLSNIYA  
Sbjct: 676 YGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANV 735

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            +WE V + R L R+  +KK    S +E+         G ++HP+  EIY +L  L  +M
Sbjct: 736 GKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKM 795

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K LGY P+    L DVE+  K+ +L  HSE+LA+ FG++   P  PIRI KNLR+CGDCH
Sbjct: 796 KSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCH 855

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  KF SRI  RE +VRD NRFHHF +G CSC D+W
Sbjct: 856 NATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 208/384 (54%), Gaps = 8/384 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T    L++C      V G+  H     +G   +   +  LI+ YS+ G    AR +F
Sbjct: 217 DFYTFPPVLKACG---TLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R + SWN +I     NG   +A+ +   M  EG    +  TV S+L  C    D+
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG-IKMNFVTVVSILPVCPQLGDI 332

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                +H++ +K  ++ ++FV  AL+++YAK G + DA + F+ M   + V+W+S++A +
Sbjct: 333 STAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAY 392

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSN 270
            QN+    A   F + Q+ G + +  T+ S+    A        + VH  + + G+   +
Sbjct: 393 EQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMED 452

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   +++VDMYAK G +  A+ VF  I  K+V+ WNT+I+G++++  + E + +++ M++
Sbjct: 453 VVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512

Query: 331 AG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
              + PN+ T++S+L A +H+G +++G      ++K  N+  +VF  +C+ID+ G+ G +
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRL 571

Query: 390 HEAYDLILNMPFDATASMWGSLLA 413
            +A  L   +P +++ + W ++++
Sbjct: 572 VDAMSLFYQVPQESSVT-WNAIIS 594



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 183/348 (52%), Gaps = 6/348 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  HA ++  G       S  L+N Y+  G +S +R  FD++PQ+ + +WN++I +Y  N
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G   EA+  F  +L   +     +T   VL AC     + + +++H +A K     NVFV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVDGRRIHCWAFKLGFQWNVFV 252

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
             +L+ +Y++ G    A  +F+ MP R+  +W++M++G +QN    +AL +    ++ G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           + N  T+ S++  C  L  +     +H  + K G   ++F +++L++MYAK G + DA  
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
            F  +   +VV WN++I+ + ++   V     F KMQ  G  P+  T +S+ S  +    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI---HEAYDLIL 397
            +  +S    ++++  ++ +V   + ++D+  + GL+   H+ +++IL
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIL 480


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 346/574 (60%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L + +  R    GK  H   +  G ++    S  L++ Y+KCG +  AR++FD M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSWN++I +Y  N   +EA+ +F  ML EG  P ++ +V   L ACA   D+   
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKP-TDVSVMGALHACADLGDLERG 356

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H  +++  +DRNV V  +L+ +Y KC  +  A+ +F  +  R  V+W++M+ GF QN
Sbjct: 357 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 416

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               +AL  F + +   ++ + FT  SVI A A L+     K +H V+ ++    N+F  
Sbjct: 417 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVT 476

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG ++ A  +F  + E++V  WN MI G+  H      + LFE+MQ+  + 
Sbjct: 477 TALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIK 536

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T++SV+SACSH G+VE G   F +M + +++  ++ HY  M+D+LGRAG ++EA+D
Sbjct: 537 PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWD 596

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I+ MP     +++G++L +C+ ++N+  AE AA++LF + PD+ G H+LL+NIY A   
Sbjct: 597 FIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASM 656

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WE+V + R  +    ++K    S VEIK        G   HP   +IY+ LEKL+  +K+
Sbjct: 657 WEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKE 716

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+T   L  VE+  K++LL  HSEKLA++FGL+    G  I + KNLR+C DCH+ 
Sbjct: 717 AGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNA 775

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S + GRE +VRD+ RFHHF NG+CSC D+W
Sbjct: 776 TKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 212/373 (56%), Gaps = 3/373 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C  E     GK  H  ++  G + D      L N Y+KC  ++ ARKVFD MP+R +
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWNTI+  Y+ NG  + A+ +  +M  E   P S  T+ SVL A +A R +   K++H 
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKP-SFITIVSVLPAVSALRLISVGKEIHG 260

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +A+++  D  V + TAL+D+YAKCG +  A ++F+ M ERN V+W+SM+  +VQNE  +E
Sbjct: 261 YAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKE 320

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+++F++    G++    ++   + ACA L  L +G+ +H +  + G   N+   +SL+ 
Sbjct: 321 AMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLIS 380

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY KC  V  A  +F  ++ + +V WN MI GF+++ R ++ +  F +M+   + P+  T
Sbjct: 381 MYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFT 440

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           Y+SV++A + + +    K +   +V +  +  NVF  + ++D+  + G I  A  LI +M
Sbjct: 441 YVSVITAIAELSITHHAK-WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDM 498

Query: 400 PFDATASMWGSLL 412
             +   + W +++
Sbjct: 499 MSERHVTTWNAMI 511



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 170/303 (56%), Gaps = 1/303 (0%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           GL  +      L++ + + G +  A +VF+ +  +  V ++T++  +       +A+  F
Sbjct: 64  GLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFF 123

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           + M  +   P   +  + +L  C  + ++   K++H   +K+    ++F  T L ++YAK
Sbjct: 124 VRMRYDDVEPVV-YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAK 182

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           C  +++A +VF+ MPER+ V+W+++VAG+ QN +   AL + +      L+ +  TI SV
Sbjct: 183 CRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSV 242

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + A + L  +  GK++H    ++GF S +  +++LVDMYAKCG +  A  +F G+ E+NV
Sbjct: 243 LPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNV 302

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WN+MI  + ++    E M++F+KM   G+ P + + +  L AC+ +G +E+G+    L
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 363 MVK 365
            V+
Sbjct: 363 SVE 365



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 150/289 (51%), Gaps = 6/289 (2%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E +Q+     K  + +  F  T L+ ++ + G + +A+RVFE +  +  V + +M+ GF 
Sbjct: 52  ELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFA 111

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +    ++AL  F R +   +E   +  + ++  C   A L  GK++H +L K+GF  ++F
Sbjct: 112 KVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLF 171

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           A + L +MYAKC  V +A  VF  + E+++V WNT+++G+S++  +   + + + M +  
Sbjct: 172 AMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEEN 231

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHE 391
           L P+  T +SVL A S + ++  GK      ++   + L N+   + ++D+  + G +  
Sbjct: 232 LKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNI--STALVDMYAKCGSLET 289

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDN 438
           A  L   M  +     W S++ +     N + A +  +++   G++P +
Sbjct: 290 ARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTD 337



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 8/193 (4%)

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L  L   +Q+  ++ K G     F  + LV ++ + G V +A  VF  I+ K  VL+
Sbjct: 47  CSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLY 103

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +TM+ GF++ +   + +  F +M+   + P    +  +L  C     +  GK    L+VK
Sbjct: 104 HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
               L ++F  + + ++  +   ++EA  +   MP     S W +++A    Y    +A 
Sbjct: 164 SGFSL-DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS-WNTIVAG---YSQNGMAR 218

Query: 426 IAAKQLFGMEPDN 438
           +A + +  M  +N
Sbjct: 219 MALEMVKSMCEEN 231


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 328/557 (58%), Gaps = 10/557 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H+  I  GL ++   +  + N Y KCG + GA  VF++M ++  V+W  I+  YT 
Sbjct: 130 GKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQ 189

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
             R+ +A+ALF  M+ EG     E+  S VL ACA   ++   +Q+H   +K  ++  V 
Sbjct: 190 AERQMDALALFAKMVNEG-VELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVS 248

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VGT L+D Y KC  +  A++ FE + E N+V+WS+++ G+ Q   +EEAL  F   +   
Sbjct: 249 VGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRS 308

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ N FT +S+  AC+ LA    G Q HA   K+   +     S+++ MY++CG +  A 
Sbjct: 309 VDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYAT 368

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  I++ + V W  +I+G++    + E + LF +MQ  G+ PN  T+I+VL+ACSH G
Sbjct: 369 RVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSG 428

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +V +G+ Y + M   + V   + HY CM+DI  RAG + EA +LI +MPF   A  W  L
Sbjct: 429 LVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCL 488

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L  C  YRNLE+ E+AA+ LF ++P++   ++L+ N+YA+  +W+E A  RK++ +  ++
Sbjct: 489 LGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLR 548

Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           KE S SW+ +KGK        ++HP+  EIYSKLE L + + K      TE D+ +    
Sbjct: 549 KELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIKEETGLLTEEDVSNSLPE 608

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
           RK++LL+ HSE+LAL FGL+      P+ + KNLR C DCH F K  S I GRE +VRD 
Sbjct: 609 RKEQLLV-HSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQVSLITGREIVVRDS 667

Query: 584 NRFHHFTNGSCSCWDFW 600
            RFHHF  G CSC D+W
Sbjct: 668 FRFHHFKLGECSCNDYW 684



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 189/374 (50%), Gaps = 3/374 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            ++C + ++   G++ H ++     N      N ++  Y KCG ++ ARKVFDEM +R +
Sbjct: 17  FEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERNL 76

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWNTII +Y  NG   +   +F NML E +T  +  T    L +      +   KQ+H 
Sbjct: 77  VSWNTIISAYAENGVFDKGFCMFSNML-ELETKPNGSTYIGFLRSLLNPSGLEIGKQIHS 135

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+++ +  N  V TA+ ++Y KCG +  A  VFE M E+N V W+ ++ G+ Q E   +
Sbjct: 136 HAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMD 195

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF +    G+E +++  S V+ ACAGL  L  G+Q+H  + K G  S +   + LVD
Sbjct: 196 ALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVD 255

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
            Y KC  +  A   F  I E N V W+ +I+G+ +     E +  FE ++   +  N  T
Sbjct: 256 FYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFT 315

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           Y S+  ACS +     G       +K  +++      S MI +  R G +  A  +  ++
Sbjct: 316 YTSIFQACSALADFNSGAQAHADAIKS-SLVAYQHGESAMITMYSRCGRLDYATRVFESI 374

Query: 400 PFDATASMWGSLLA 413
             D  A  W +++A
Sbjct: 375 D-DPDAVAWTAIIA 387



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 3/274 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++CA       G+  H  I+ +GL ++      L++FY KC  +  A K F+ + +   
Sbjct: 219 LKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPND 278

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW+ +I  Y   G  +EA+  F   LR      + FT +S+  AC+A  D     Q H 
Sbjct: 279 VSWSALITGYCQMGEFEEALKTF-ESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHA 337

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+K+++       +A++ +Y++CG +  A+RVFES+ + + V W++++AG+       E
Sbjct: 338 DAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPE 397

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLCKTGFGSNMFAASSLV 278
           AL LFRR Q  G+  N  T  +V+ AC+    +I+G+Q + ++    G  + +     +V
Sbjct: 398 ALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMV 457

Query: 279 DMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISG 311
           D+Y++ G + +A  +   +    + + W  ++ G
Sbjct: 458 DIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 13/183 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  +  Q+C+       G   HA  I   L       + +I  YS+CG +  A +VF+ +
Sbjct: 315 TYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESI 374

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                V+W  II  Y   G   EA+ LF  M   G  P +  T  +VL AC+    V E 
Sbjct: 375 DDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRP-NAVTFIAVLTACSHSGLVIEG 433

Query: 155 KQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
           +Q        +M  N  V T       ++D+Y++ G + +A  +  SMP   + ++W  +
Sbjct: 434 RQ-----YLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCL 488

Query: 208 VAG 210
           + G
Sbjct: 489 LGG 491


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 347/605 (57%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L+   R+ A   G+  H  I+ +G +++    N LI+ YS  G +S AR VFD  
Sbjct: 121 TYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRS 180

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V+WN +I  Y  + +  E++ LF  M R    P S  T+ SVL AC+  +D+   
Sbjct: 181 SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLP-SSITLVSVLSACSKLKDLNVG 239

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM------------------ 196
           K++H +     ++    +  AL+D+YA CG +  A  +F++M                  
Sbjct: 240 KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNL 299

Query: 197 -------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                        PER+ V+W++M+ G++Q   ++E L LFR  Q   ++ ++FT+ S++
Sbjct: 300 GQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 359

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            ACA L AL  G+ + A + K     + F  ++L+DMY  CG V  A  +F+ +  ++ +
Sbjct: 360 TACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKI 419

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W  +I G + +    E + +F +M +A + P+E T I VL AC+H GMV+KGK +F  M
Sbjct: 420 SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARM 479

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
             QH + PNV HY CM+D+LGRAG + EA+++I NMP    + +WGSLL +CR +R+ E+
Sbjct: 480 TTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEM 539

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--- 480
           AE+AA+Q+  +EP+N   ++LL NIYAA  RWE++   RKL+ D  +KK    S +E   
Sbjct: 540 AEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNG 599

Query: 481 -----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                + G + HP+  EIYSKL+++  ++K  GY P+T     D+ +  K+  +  HSEK
Sbjct: 600 SVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEK 659

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   PGV IRI+KNLR+C DCH   K  S++  RE IVRD  RFHHF +GSCS
Sbjct: 660 LAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCS 719

Query: 596 CWDFW 600
           C D+W
Sbjct: 720 CKDYW 724



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 203/421 (48%), Gaps = 49/421 (11%)

Query: 21  IASASANANATELSTLQAT-----LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           I++ + +   T L +L  T     +++C   ++  + K  H++ I  GL ++ +    +I
Sbjct: 2   ISATTLSPPPTHLPSLPQTPPLSLIKTC---KSMAQLKQIHSQTICTGLISNPIVPAQII 58

Query: 76  NFYSK--CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
            F  K   G +  AR VFD MP      WN +I  Y+  G    AV+++  ML  G  P 
Sbjct: 59  AFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMP- 117

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
            E+T   +L        V   ++LH   +K     NVFV  AL+ +Y+  G +S A  VF
Sbjct: 118 DEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVF 177

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           +   + + VTW+ M++G+ +++ ++E++ LF   + + +  +  T+ SV+ AC+ L  L 
Sbjct: 178 DRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            GK+VH  +            ++L+DMYA CG +  A  +F  ++ ++V+ W  +++GF+
Sbjct: 238 VGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFT 297

Query: 314 RHA-------------------------------RSVEVMILFEKMQQAGLHPNEQTYIS 342
                                             R  EV+ LF +MQ A + P+E T +S
Sbjct: 298 NLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 357

Query: 343 VLSACSHIGMVEKG---KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +L+AC+H+G +E G   K+Y D    ++ +  + F  + +ID+    G + +A  +   M
Sbjct: 358 ILTACAHLGALELGEWIKAYID----KNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM 413

Query: 400 P 400
           P
Sbjct: 414 P 414



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 134/278 (48%), Gaps = 12/278 (4%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAK--CGLISDASRVFESMPERNEVTWSSMVAG 210
           + KQ+H   +   +  N  V   ++    K   G +  A  VF++MP  N   W++M+ G
Sbjct: 34  QLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKG 93

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + +      A+ ++      G+  +++T   ++       A+  G+++H  + K GF SN
Sbjct: 94  YSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSN 153

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F  ++L+ +Y+  G V  A  VF    + +VV WN MISG++R  +  E M LF++M++
Sbjct: 154 VFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMER 213

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYF----DLMVKQHNVLPNVFHYSCMIDILGRA 386
             + P+  T +SVLSACS +  +  GK       DL ++   VL N      +ID+    
Sbjct: 214 MRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENA-----LIDMYAAC 268

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           G +  A  +  NM      S W +++    N   + LA
Sbjct: 269 GDMDTALGIFDNMKSRDVIS-WTAIVTGFTNLGQVGLA 305



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           +AN    E  T+ + L +CA   A   G+   A I    +  D+   N LI+ Y  CG +
Sbjct: 345 AANIKPDEF-TMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNV 403

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             A ++F+ MP R  +SW  +I     NG  +EA+ +F  ML+   TP  E T   VLCA
Sbjct: 404 EKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITP-DEVTCIGVLCA 462

Query: 145 CAAKRDVFECKQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEV 202
           C     V + K+       +  ++ NV     ++D+  + G + +A  V ++MP + N +
Sbjct: 463 CTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSI 522

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            W S++     +   +E +      Q+L LE     +  ++C
Sbjct: 523 VWGSLLGACRVHR--DEEMAEMAAQQILELEPENGAVYVLLC 562


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 334/590 (56%), Gaps = 52/590 (8%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K++    + D LT   ++  Y + G +  AR VF+E+  +  V WN +I  Y  +G   E
Sbjct: 218 KVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVE 277

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV--------FALKAAMDRN 169
           A  LF  M+ E + P  EFT +SVL ACA        K +H         F  +AA+  N
Sbjct: 278 AFELFRRMVLE-RVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVN 336

Query: 170 VFVGTALLDVYAKCGLISDASR-------------------------------VFESMPE 198
                AL+ +Y+KCG I+ A R                               VFE MP 
Sbjct: 337 ----NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +NE++W  MV+G+V     E+AL LF R +   ++   +T +  I AC  L +L  GKQ+
Sbjct: 393 KNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQL 452

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H  L + GF  +  A ++L+ MYA+CG V +A  +F  +   + V WN MIS   +H   
Sbjct: 453 HGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHG 512

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E + LF++M   G++P+  ++++VL+AC+H G+V++G  YF+ M +   ++P   HY+ 
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTR 572

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           +ID+LGRAG I EA DLI  MPF+ T S+W ++L+ CR   ++EL   AA QLF M P +
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQH 632

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRI 490
            G ++LLSN Y+A  RW + AR RKL+RD  VKKE   SW+E        + G   HP  
Sbjct: 633 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEA 692

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
            ++Y  LE +   M+KLGY P+T+  LHD+E  +K+ +L  HSE+LA+ FGL+ L PG  
Sbjct: 693 HKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGAT 752

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + ++KNLRIC DCH+ M F S+  GRE +VRD+ RFHHF +G CSC ++W
Sbjct: 753 VTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 183/414 (44%), Gaps = 75/414 (18%)

Query: 74  LINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           L+  Y+  G +  A   FD +PQ  R  V  N +I +Y        AVA+F ++L  G  
Sbjct: 94  LVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSL 153

Query: 132 PYSEFTVSSVLCACA--AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS-- 187
              +++ +++L A        V  C QL    LK+     + V  AL+ +Y KC  +   
Sbjct: 154 RPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEAT 213

Query: 188 -DASRVFESMPERNEVTWSSM-------------------------------VAGFVQNE 215
            DA +V + MP+++ +TW++M                               ++G+V + 
Sbjct: 214 RDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSG 273

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA- 274
           +  EA  LFRR  +  +  ++FT +SV+ ACA       GK VH  + +        AA 
Sbjct: 274 MVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAAL 333

Query: 275 ---SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA---RSVEV------- 321
              ++LV +Y+KCG +  A  +F  ++ K+VV WNT++SG+   +   ++VEV       
Sbjct: 334 PVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK 393

Query: 322 ---------------------MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
                                + LF +M+   + P + TY   +SAC  +G ++ GK   
Sbjct: 394 NELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLH 453

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
             +V+      N    + +I +  R G + EA  + L MP   + S W +++++
Sbjct: 454 GHLVQLGFEGSNSAG-NALITMYARCGAVKEANLMFLVMPNIDSVS-WNAMISA 505



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    + +C    +   GK  H  ++ +G        N LI  Y++CG +  A  +F  M
Sbjct: 432 TYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVM 491

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P    VSWN +I +   +G  +EA+ LF  M+ EG  P    +  +VL AC     V E 
Sbjct: 492 PNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYP-DRISFLTVLTACNHSGLVDEG 550

Query: 155 KQLHVFALKAAMDRNVFVG----TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            Q   +      D  +  G    T L+D+  + G I +A  + ++MP E     W ++++
Sbjct: 551 FQ---YFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILS 607

Query: 210 G 210
           G
Sbjct: 608 G 608


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 334/542 (61%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ NI+++ Y++ G +  AR++FD  P R + +W  ++  Y  NG  +EA  +F  M 
Sbjct: 98  DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 157

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++     +++ A   +R + E K+L  F +     RNV     +L  YA+ G++
Sbjct: 158 ERNAVSWN-----AMVAAYIQRRMMDEAKEL--FNMMPC--RNVASWNTMLTGYAQAGML 208

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A  VF++MP+++ V+W++M+A + Q    EE L LF      G   N+   + V+  C
Sbjct: 209 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 268

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  G Q+H  L + G+G   F  ++L+ MY KCG + DA   F  +EE++VV WN
Sbjct: 269 ADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN 328

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    E + +F+ M+     P++ T + VL+ACSH G+VEKG SYF  M   
Sbjct: 329 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHD 388

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V     HY+CMID+LGRAG + EA+DL+ +MPF+  ++MWG+LL + R +RN EL   
Sbjct: 389 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRS 448

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
           AA+++F +EP+NAG ++LLSNIYA++ +W +  + R ++ +  VKK    SW+E++ K +
Sbjct: 449 AAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVH 508

Query: 487 --------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                   HP   +IY+ LE L   MKK GY   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 509 TFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAV 568

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            +G++ + PG PIR++KNLR+CGDCH+  K+ S I GR  ++RD NRFHHF  GSCSC D
Sbjct: 569 AYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGD 628

Query: 599 FW 600
           +W
Sbjct: 629 YW 630



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 139/317 (43%), Gaps = 71/317 (22%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D++T N++I+ ++  GL+S AR  FD  P++  VSWN ++ +Y  NGR +EA  LF    
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF---- 60

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                                                +  + +V    AL+  Y + G +
Sbjct: 61  ------------------------------------NSRTEWDVISWNALMSGYVQWGKM 84

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           S+A  +F+ MP R+ V+W+ MV+G+ +     EA  LF  A V  +    FT ++V+   
Sbjct: 85  SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGY 140

Query: 247 AGLAALIQGKQVHAVLCKTGFGS---------------------------NMFAASSLVD 279
           A    L + ++V   + +    S                           N+ + ++++ 
Sbjct: 141 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLT 200

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
            YA+ G + +A  VF  + +K+ V W  M++ +S+   S E + LF +M + G   N   
Sbjct: 201 GYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSA 260

Query: 340 YISVLSACSHIGMVEKG 356
           +  VLS C+ I  +E G
Sbjct: 261 FACVLSTCADIAALECG 277



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S     L +CA   A   G   H ++I  G        N L+  Y KCG +  AR  F+E
Sbjct: 259 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 318

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-----AK 148
           M +R +VSWNT+I  Y  +G  +EA+ +F +M+R   T   + T+  VL AC+      K
Sbjct: 319 MEERDVVSWNTMIAGYARHGFGKEALEIF-DMMRTTSTKPDDITLVGVLAACSHSGLVEK 377

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
              +     H F + A  +      T ++D+  + G +++A  + + MP E +   W ++
Sbjct: 378 GISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGAL 433

Query: 208 VA 209
           + 
Sbjct: 434 LG 435


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 343/574 (59%), Gaps = 14/574 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    ++ C    A   GK  H  I   G +  T  +NILIN Y K  L+  A+ +FD+M
Sbjct: 287 TYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKM 346

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSW T+I +Y+       A+ L   M R+G  P + FT SSVL AC     +++ 
Sbjct: 347 PERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMP-NMFTFSSVLRACER---LYDL 402

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQLH + +K  ++ +VFV +AL+DVY+K G + +A +VF  M   + V W+S++A F Q+
Sbjct: 403 KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQH 462

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +EAL L++  + +G   +Q T++SV+ AC  L+ L  G+Q H  + K  F  ++   
Sbjct: 463 SDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILN 520

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMY KCG + DA F+F+ + +K+V+ W+TMI+G +++  S+E + LFE M+  G  
Sbjct: 521 NALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPK 580

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T + VL ACSH G+V +G  YF  M   + + P   HY CM+D+LGRA  + +   
Sbjct: 581 PNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVK 640

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI  M  +     W +LL +CR  +N++LA  AAK++  ++P + G ++LLSNIYA ++R
Sbjct: 641 LIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKR 700

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W +VA  R+ ++   ++KE   SW+E+         G ++HP+I EI  +L + +  +  
Sbjct: 701 WNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAG 760

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+T   L D+E  ++++ L +HSEKLA+ FG+M       IRI KNL+ICGDCH F
Sbjct: 761 AGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKF 820

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  + +  R  ++RD  R+HHF +G CSC D+W
Sbjct: 821 AKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 5/184 (2%)

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  +  T S +I  C    A+ +GK+VH  +   G+    F  + L++MY K   + +A
Sbjct: 280 GVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEA 339

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F  + E+NVV W TMIS +S    +   M L   M + G+ PN  T+ SVL AC  +
Sbjct: 340 QVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERL 399

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
             +++  S+    + +  +  +VF  S +ID+  + G + EA  +   M     + +W S
Sbjct: 400 YDLKQLHSW----IMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM-MTGDSVVWNS 454

Query: 411 LLAS 414
           ++A+
Sbjct: 455 IIAA 458


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/541 (39%), Positives = 334/541 (61%), Gaps = 10/541 (1%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           ++SNILIN Y + G +  ARKVFDEMP R + +WN +I         +E ++LF  M   
Sbjct: 26  MSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGL 85

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G +P  E+T+ SV    A  R V   +Q+H +A+K  ++ ++ V ++L  +Y + G + D
Sbjct: 86  GFSP-DEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
              V  SMP RN V W++++ G  QN   E  L L++  ++ G   N+ T  +V+ +C+ 
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LA   QG+Q+HA   K G  S +   SSL+ MY+KCGC+ DA   FS  E+++ V+W++M
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 264

Query: 309 ISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           IS +  H +  E + LF  M +Q  +  NE  ++++L ACSH G+ +KG   FD+MV+++
Sbjct: 265 ISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 324

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
              P + HY+C++D+LGRAG + +A  +I +MP      +W +LL++C  ++N E+A+  
Sbjct: 325 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKV 384

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--- 484
            K++  ++P+++  ++LL+N++A+ +RW +V+  RK +RD  VKKE   SW E KG+   
Sbjct: 385 FKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 444

Query: 485 -----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
                R+  +  EIYS L++L  EMK  GYKP+T   LHD+++  K+  L+ HSEKLA+ 
Sbjct: 445 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 504

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           F LM L  G PIRI+KNLR+C DCH   K+ S I  RE  +RD +RFHHF NG CSC D+
Sbjct: 505 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDY 564

Query: 600 W 600
           W
Sbjct: 565 W 565



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 109/190 (57%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +N      L++ Y + G +  A +VF+ MP+R   TW++M+AG +Q E  EE L LFR  
Sbjct: 23  KNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREM 82

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
             LG   +++T+ SV    AGL ++  G+Q+H    K G   ++   SSL  MY + G +
Sbjct: 83  HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKL 142

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            D   V   +  +N+V WNT+I G +++     V+ L++ M+ +G  PN+ T+++VLS+C
Sbjct: 143 QDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSC 202

Query: 348 SHIGMVEKGK 357
           S + +  +G+
Sbjct: 203 SDLAIRGQGQ 212



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 152/306 (49%), Gaps = 6/306 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL +     A  R+   G+  H   I  GL  D + ++ L + Y + G +     V   M
Sbjct: 93  TLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSM 152

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WNT+I     NG  +  + L+  M   G  P ++ T  +VL +C+      + 
Sbjct: 153 PVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRP-NKITFVTVLSSCSDLAIRGQG 211

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A+K      V V ++L+ +Y+KCG + DA++ F    + +EV WSSM++ +  +
Sbjct: 212 QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFH 271

Query: 215 ELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC-KTGFGSNMF 272
              +EA+ LF   A+   +E N+    +++ AC+      +G ++  ++  K GF   + 
Sbjct: 272 GQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLK 331

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             + +VD+  + GC+  A  +   +  K + V+W T++S  + H  +     +F+++ + 
Sbjct: 332 HYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILE- 390

Query: 332 GLHPNE 337
            + PN+
Sbjct: 391 -IDPND 395


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 349/575 (60%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCAR-ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+ + L++C+  E +   G+  H   +  G+  D+  S  LI+ YSK G +  A  +F  
Sbjct: 400 TITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHN 459

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                + SWN ++  +T +   +EA+ LF +++ E      + T ++   A      + +
Sbjct: 460 QDGFDLASWNAMMHGFTVSDNYREALRLF-SLMHERGEKADQITFANAAKAAGCLVRLQQ 518

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   +K     ++FV + +LD+Y KCG +  A +VF  +P  ++V W+++++G V+
Sbjct: 519 GKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVE 578

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   E+AL  + + ++ G++ +++T ++++ AC+ L AL QGKQ+HA + K     + F 
Sbjct: 579 NGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV 638

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +SLVDMYAKCG + DAY +F  +  ++V LWN MI G ++H  + E +  F +M+  G+
Sbjct: 639 MTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGV 698

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+I VLSACSH G+       FD M K + V P + HYSC++D L RAG I EA 
Sbjct: 699 TPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAE 758

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            ++ +MPF+A+A+M+ +LL +CR   + E  E  A++LF M+P ++  ++LLSNIYAA  
Sbjct: 759 KVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAAN 818

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           +WE    AR +++   VKKE   SW+++K        G R+H     IY+K+E +++ +K
Sbjct: 819 QWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIK 878

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY P+TE  L D+E+  K+  L +HSEKLA+ +GLM   P   +R++KNLR+CGDCH+
Sbjct: 879 EEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHN 938

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S +  RE ++RD NRFHHF +G CSC D+W
Sbjct: 939 AIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 175/396 (44%), Gaps = 40/396 (10%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T   TL    + C    +P   +      + +GL  D   +  L+N Y+K   I  AR +
Sbjct: 120 TTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVL 179

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD MP R +V WN ++ +Y   G   E + LF    R G  P    +V ++L     K+ 
Sbjct: 180 FDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP-DCVSVRTILMG-VGKKT 237

Query: 151 VFE--CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           VFE   +Q+  +A K      +FV          C   SD +             W+  +
Sbjct: 238 VFERELEQVRAYATK------LFV----------CDDDSDVT------------VWNKTL 269

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           + ++Q     EA+  FR      +  +  T   ++   A L  L  GKQ+H  + + G+ 
Sbjct: 270 SSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWD 329

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
             +  A+S ++MY K G V  A  +F  ++E +++ WNT+ISG +R       + LF  +
Sbjct: 330 QFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDL 389

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVE-KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
            ++GL P++ T  SVL ACS +      G+      +K   VL + F  + +ID+  + G
Sbjct: 390 LRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVL-DSFVSTALIDVYSKGG 448

Query: 388 LIHEAYDLILNMP-FDATASMWGSLL---ASCRNYR 419
            + EA  L  N   FD  +  W +++       NYR
Sbjct: 449 KMEEAELLFHNQDGFDLAS--WNAMMHGFTVSDNYR 482



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 149/324 (45%), Gaps = 36/324 (11%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIG 107
           + GK  HA I+  GLN D   +N LI  Y+KCG +  ARK+FD  PQ  R +V++N I+ 
Sbjct: 30  ILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILA 89

Query: 108 SYTTNG------REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           +Y   G      +  EA  +F  +LR+     +  T+S +   C         + L  +A
Sbjct: 90  AYAHTGELHDVEKTHEAFHIF-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYA 148

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
           +K  +  +VFV  AL+++YAK   I +A  +F+ MP R+ V W+ M+  +V+    +E L
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            LF      GL  +          C  +  ++ G     V  KT F   +      V  Y
Sbjct: 209 GLFSAFHRSGLRPD----------CVSVRTILMG-----VGKKTVFEREL----EQVRAY 249

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           A    V D        ++ +V +WN  +S + +     E +  F  M ++ +  +  TYI
Sbjct: 250 ATKLFVCD--------DDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYI 301

Query: 342 SVLSACSHIGMVEKGKSYFDLMVK 365
            +LS  + +  +E GK     +V+
Sbjct: 302 VILSVVASLNHLELGKQIHGAVVR 325



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 109/207 (52%), Gaps = 12/207 (5%)

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-- 197
           S+L    A  D+   K+ H   + + ++ + +V   L+ +YAKCG +  A ++F+  P  
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77

Query: 198 ERNEVTWSSMVAGFVQN-ELYE-----EALILFRRAQVLGLEYNQFTISSV--ICACAGL 249
           +R+ VT+++++A +    EL++     EA  +FR  +   +   + T+S +  +C   G 
Sbjct: 78  DRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGS 137

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
            +  +  Q +AV  K G   ++F A +LV++YAK   + +A  +F  +  ++VVLWN M+
Sbjct: 138 PSASEALQGYAV--KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPN 336
             +       EV+ LF    ++GL P+
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPD 222


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 344/594 (57%), Gaps = 47/594 (7%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  HA ++ +GL+ D+   N ++ F    G  + + ++F +  +  I  +NT+I     N
Sbjct: 27  KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLN 86

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
              QE++ ++ +M +EG +P S FT   +L ACA   D     +LH   +KA  + + FV
Sbjct: 87  DSFQESIEIYHSMRKEGLSPDS-FTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFV 145

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNE------------------------------- 201
            T+L+ +Y KCG I +A +VF+ +PE+N                                
Sbjct: 146 NTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFD 205

Query: 202 -------VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
                  V+WSSM+ G+  N L +EAL LF +    G   + + +  V+CACA L AL  
Sbjct: 206 GMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALEL 265

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           G     ++ +  F  N    ++L+DMYAKCG +  A+ VF G+ +K++V+WN  ISG + 
Sbjct: 266 GNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAM 325

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
                    LF +M+++G+ P+  T++ +L AC+H G+V++G+ YF+ M +   + P + 
Sbjct: 326 SGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIE 385

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           HY CM+D+LGRAG + EA+ L+ +MP +A A +WG+LL  CR +R+ +L E   KQL  +
Sbjct: 386 HYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIAL 445

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRN 486
           EP N+GN++LLSNIY+A+ +WE+ A+ R ++ +  +KK    SW+E+         G  +
Sbjct: 446 EPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTS 505

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           HP   +IY+KL +LV+++K  GY P T++ L D+E+  K+  +  HSEKLA+ FGL+   
Sbjct: 506 HPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTA 565

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           P   IR++KNLR+CGDCH  +K  SR  GRE IVRD NRFH F +GSCSC D+W
Sbjct: 566 PNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 51/326 (15%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CAR      G   H  ++  G  +D   +  L++ Y KCG I  A KVFD++
Sbjct: 110 TFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDI 169

Query: 95  PQ-----------------RC---------------------IVSWNTIIGSYTTNGREQ 116
           P+                 +C                     IVSW+++I  Y +NG  +
Sbjct: 170 PEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPK 229

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF----- 171
           EA+ LF  ML EG  P   + +  VLCACA         +L  +A    MDRN F     
Sbjct: 230 EALDLFFKMLNEGFRP-DCYAMVGVLCACAR----LGALELGNWA-SNLMDRNEFLGNPV 283

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +GTAL+D+YAKCG +  A  VF  M +++ V W++ ++G   +   + A  LF + +  G
Sbjct: 284 LGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSG 343

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA 290
           +E +  T   ++CAC     + +G+Q    + +       +     +VD+  + G + +A
Sbjct: 344 IEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEA 403

Query: 291 Y-FVFSGIEEKNVVLWNTMISGFSRH 315
           +  V S   E N ++W  ++ G   H
Sbjct: 404 HQLVKSMPMEANAIVWGALLGGCRLH 429



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 2/167 (1%)

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           G  +L   K VHA L + G   + +  + ++      G    ++ +F   +E N+ L+NT
Sbjct: 19  GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI G   +    E + ++  M++ GL P+  T+  +L AC+ +   + G     L+VK  
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKA- 137

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
               + F  + ++ + G+ G I  A+ +  ++P +   + W ++++ 
Sbjct: 138 GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISG 183


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/554 (40%), Positives = 329/554 (59%), Gaps = 9/554 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H   + +G + +   ++ L + YSKCGL+S A +VFD+MPQ+  V+W  +I  Y  NG  
Sbjct: 64  HCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSL 123

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           + AV  F +M REG     +    SVL A    +D +  K +H    KA  +  V V  A
Sbjct: 124 EAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNA 183

Query: 176 LLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           L+D+YAK   +  ASRV +  P   N V+ +SM+ G+++ +  EEAL+++   +  G+E 
Sbjct: 184 LIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEP 243

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N+FT SS+I  CA  A L QG Q+HA + KT    + F  S+LVDMY KCG +  +  +F
Sbjct: 244 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 303

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
           + IE +  + WN +I+ F++H    E +  F++M  +G+ PN   ++S+L+ACSH G+V+
Sbjct: 304 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 363

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +G  YF  M + H + P   HYSC+ID  GRAG + EAY  I  MP    A  W SLL +
Sbjct: 364 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGA 423

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEK 474
           CR   + EL E+AA+ L  +EP N G H+ LS IYA+  +WE+V   RKL+RDS +KK  
Sbjct: 424 CRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLP 483

Query: 475 SKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
             SWV+   K         +HP+  +IY KLE+L   +K+ GY P+T     ++ED  K+
Sbjct: 484 GFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKE 543

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
            +L +HSE++A+ F L+ +    PI + KNLRIC DCH+  KF  ++  R+ IVRD +RF
Sbjct: 544 RILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRF 603

Query: 587 HHFTNGSCSCWDFW 600
           HHF NG CSC D+W
Sbjct: 604 HHFVNGRCSCGDYW 617



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 162/299 (54%), Gaps = 6/299 (2%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R  VSW T++   + N    +A+A F  M R G  P + F +SS   A AA      
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAP-TRFALSSAARAAAALGAPLP 59

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             QLH   ++   D  +FV + L D+Y+KCGL+S+A RVF+ MP+++ V W++M+ G+ +
Sbjct: 60  GAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 119

Query: 214 NELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N   E A++ FR  +  GL   +Q    SV+ A  GL      K +H  + K GF   + 
Sbjct: 120 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 179

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEK--NVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
             ++L+DMYAK   V  A  V   I+    NVV   +MI G+       E ++++ ++++
Sbjct: 180 VRNALIDMYAKSMDVESASRVLK-IDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRR 238

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            G+ PNE T+ S++  C+   ++E+G      ++K  +++ + F  S ++D+ G+ GLI
Sbjct: 239 QGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT-DLIRDSFVGSTLVDMYGKCGLI 296


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/554 (40%), Positives = 329/554 (59%), Gaps = 9/554 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H   + +G + +   ++ L + YSKCGL+S A +VFD+MPQ+  V+W  +I  Y  NG  
Sbjct: 145 HCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSL 204

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           + AV  F +M REG     +    SVL A    +D +  K +H    KA  +  V V  A
Sbjct: 205 EAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNA 264

Query: 176 LLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           L+D+YAK   +  ASRV +  P   N V+ +SM+ G+++ +  EEAL+++   +  G+E 
Sbjct: 265 LIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEP 324

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N+FT SS+I  CA  A L QG Q+HA + KT    + F  S+LVDMY KCG +  +  +F
Sbjct: 325 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 384

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
           + IE +  + WN +I+ F++H    E +  F++M  +G+ PN   ++S+L+ACSH G+V+
Sbjct: 385 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 444

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +G  YF  M + H + P   HYSC+ID  GRAG + EAY  I  MP    A  W SLL +
Sbjct: 445 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGA 504

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEK 474
           CR   + EL E+AA+ L  +EP N G H+ LS IYA+  +WE+V   RKL+RDS +KK  
Sbjct: 505 CRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLP 564

Query: 475 SKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
             SWV+   K         +HP+  +IY KLE+L   +K+ GY P+T     ++ED  K+
Sbjct: 565 GFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKE 624

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
            +L +HSE++A+ F L+ +    PI + KNLRIC DCH+  KF  ++  R+ IVRD +RF
Sbjct: 625 RILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRF 684

Query: 587 HHFTNGSCSCWDFW 600
           HHF NG CSC D+W
Sbjct: 685 HHFVNGRCSCGDYW 698



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 195/365 (53%), Gaps = 7/365 (1%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGA 87
           +A     L + LQSC R     RG++ HA+++  G     T  +N LI  YS C  ++ A
Sbjct: 16  DAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASA 75

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
            ++F  MP+R  VSW T++   + N    +A+A F  M R G  P + F +SS   A AA
Sbjct: 76  LRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAP-TRFALSSAARAAAA 134

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
                   QLH   ++   D  +FV + L D+Y+KCGL+S+A RVF+ MP+++ V W++M
Sbjct: 135 LGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAM 194

Query: 208 VAGFVQNELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           + G+ +N   E A++ FR  +  GL   +Q    SV+ A  GL      K +H  + K G
Sbjct: 195 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAG 254

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK--NVVLWNTMISGFSRHARSVEVMIL 324
           F   +   ++L+DMYAK   V  A  V   I+    NVV   +MI G+       E +++
Sbjct: 255 FELEVAVRNALIDMYAKSMDVESASRVLK-IDPGGWNVVSGTSMIDGYIETDCVEEALVI 313

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           + ++++ G+ PNE T+ S++  C+   ++E+G      ++K  +++ + F  S ++D+ G
Sbjct: 314 YVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT-DLIRDSFVGSTLVDMYG 372

Query: 385 RAGLI 389
           + GLI
Sbjct: 373 KCGLI 377


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/544 (40%), Positives = 342/544 (62%), Gaps = 8/544 (1%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + D  + N +I  Y+K G +  ARK+FDEMPQR   SWN  I  Y T+ + +EA+ LF  
Sbjct: 150 HRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRV 209

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M R  ++  ++FT+SS L A AA   +   K++H + ++  ++ +  V +ALLD+Y KCG
Sbjct: 210 MQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCG 269

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            + +A  +F+ M +R+ V+W++M+    ++   EE  +LFR     G+  N++T + V+ 
Sbjct: 270 SLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLN 329

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           ACA  AA   GK+VH  +   G+    FA S+LV MY+KCG    A  VF+ + + ++V 
Sbjct: 330 ACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVS 389

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W ++I G++++ +  E +  FE + Q+G  P++ TY+ VLSAC+H G+V+KG  YF  + 
Sbjct: 390 WTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIK 449

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           ++H ++    HY+C+ID+L R+G   EA ++I NMP      +W SLL  CR + NLELA
Sbjct: 450 EKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELA 509

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-- 482
           + AAK L+ +EP+N   ++ L+NIYA    W EVA  RK + +  + K+  KSW+EIK  
Sbjct: 510 KRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQ 569

Query: 483 ------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                 G  +HP+ ++I+  L +L +++K+ GY P+T   LHDVE+ +K++ L++HSEKL
Sbjct: 570 VHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKL 629

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A+ FG++   PG PI++ KNLR C DCH+ +K+ S+I  R+  VRD NRFH F +GSCSC
Sbjct: 630 AVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSC 689

Query: 597 WDFW 600
            D+W
Sbjct: 690 KDYW 693



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 153/303 (50%), Gaps = 4/303 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H  +I   LN D +  + L++ Y KCG +  AR +FD+M  R +VSW T+I     
Sbjct: 239 GKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFE 298

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +GR +E   LF ++++ G  P +E+T + VL ACA        K++H + + A  D   F
Sbjct: 299 DGRREEGFLLFRDLMQSGVRP-NEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSF 357

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
             +AL+ +Y+KCG    A RVF  M + + V+W+S++ G+ QN   +EAL  F      G
Sbjct: 358 AISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSG 417

Query: 232 LEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            + +Q T   V+ AC     + +G +  H++  K G        + ++D+ A+ G   +A
Sbjct: 418 TKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEA 477

Query: 291 YFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
             +   +  K +  LW +++ G   H  ++E+     K        N  TYI++ +  ++
Sbjct: 478 ENIIDNMPVKPDKFLWASLLGGCRIHG-NLELAKRAAKALYEIEPENPATYITLANIYAN 536

Query: 350 IGM 352
            G+
Sbjct: 537 AGL 539



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 142/305 (46%), Gaps = 33/305 (10%)

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
           +Q+ V   + +L       S    S+++ AC   R +   +++H     +     VF+  
Sbjct: 67  QQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISN 126

Query: 175 ALLDVYAKCGLISDAS-------------------------------RVFESMPERNEVT 203
            LLD+YAKCG + DA                                ++F+ MP+R+  +
Sbjct: 127 RLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFS 186

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W++ ++G+V +    EAL LFR  Q       N+FT+SS + A A +  L  GK++H  L
Sbjct: 187 WNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYL 246

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            +T    +    S+L+D+Y KCG + +A  +F  +++++VV W TMI       R  E  
Sbjct: 247 IRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGF 306

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           +LF  + Q+G+ PNE T+  VL+AC+       GK     M+      P  F  S ++ +
Sbjct: 307 LLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA-GYDPGSFAISALVHM 365

Query: 383 LGRAG 387
             + G
Sbjct: 366 YSKCG 370



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA   A   GK  H  ++  G +  +   + L++ YSKCG    AR+VF+EM
Sbjct: 323 TFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEM 382

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
            Q  +VSW ++I  Y  NG+  EA+  F  +L+ G  P  + T   VL AC     V + 
Sbjct: 383 HQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKP-DQVTYVGVLSACTHAGLVDKG 441

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
            +  H    K  +         ++D+ A+ G   +A  + ++MP + ++  W+S++ G
Sbjct: 442 LEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGG 499


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 340/580 (58%), Gaps = 15/580 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T +  +  C    +   G   H  I+  G + D   +  LI  YS  G +  ARKVFD+ 
Sbjct: 79  TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----D 150
            +R I  WN +  + T  G  +E + L+  M R G      FT + VL AC A       
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTADH 197

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + + K++H    +   + +V++ T L+D+YA+ G +  AS VF  MP RN V+WS+M+A 
Sbjct: 198 LTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIAC 257

Query: 211 FVQNELYEEALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           + +N    EAL  FR    +      N  T+ SV+ ACA LAAL QG+ +H  + + G  
Sbjct: 258 YAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLD 317

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           S +   S+LV MY +CG +     VF  + +++VV WN++IS +  H    + + +FE+M
Sbjct: 318 SILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEM 377

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
              G  P   T++SVL ACSH G+VE+GK  F+ M + H + P V HY+CM+D+LGRA  
Sbjct: 378 LANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANR 437

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA  ++ +M  +    +WGSLL SCR + N+ELAE A+++LF +EP NAGN++LL++I
Sbjct: 438 LDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADI 497

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKL 500
           YA  + W+EV R +KL+    ++K   + W+E++ K          +P + +I++ L KL
Sbjct: 498 YAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKL 557

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
            E+MK+ GY P+T+  L+++E   K+ +++ HSEKLAL FGL+    G PIRI KNLR+C
Sbjct: 558 AEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLC 617

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH F KF S+   +E +VRD+NRFH F NG CSC D+W
Sbjct: 618 EDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 172/323 (53%), Gaps = 17/323 (5%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +S N +I S    G+ ++A    + +L +  +P S+ T   ++  C  +  + +  ++H 
Sbjct: 47  ISNNQLIQSLCKEGKLKQA----LRVLSQESSP-SQQTYELLILCCGHRSSLSDGLRVHR 101

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             L    D++ F+ T L+ +Y+  G +  A +VF+   +R    W+++          EE
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAA----LIQGKQVHAVLCKTGFGSNMFAAS 275
            L L+ +   +G+E ++FT + V+ AC         L +GK++HA L + G+ S+++  +
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMT 221

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGL 333
           +LVDMYA+ GCV  A +VF+G+  +NVV W+ MI+ ++++ ++ E +  F +M  +    
Sbjct: 222 TLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDS 281

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNVFHYSCMIDILGRAGLIHE 391
            PN  T +SVL AC+ +  +E+G+     ++++   ++LP +   S ++ + GR G + +
Sbjct: 282 SPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVI---SALVTMYGRCGKL-D 337

Query: 392 AYDLILNMPFDATASMWGSLLAS 414
               + +   D     W SL++S
Sbjct: 338 VGQRVFDRMHDRDVVSWNSLISS 360


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/583 (39%), Positives = 350/583 (60%), Gaps = 21/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T +  + SC  + +   G   H +++G GL+ D   +  LIN Y   G +  A KVFDE 
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----D 150
            ++ I  WN I  +     R ++ + L+  M   G  P + FT + VL AC         
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIG-IPSNRFTYTYVLKACVVSELSICP 194

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + + K++H   L+   + +V V T LLDVYA+ G +S AS VF +MP++N V+WS+M+A 
Sbjct: 195 LRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIAC 254

Query: 211 FVQNELYEEALILFRRAQVLGLEY-----NQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           + +NE+  +AL LF   Q++ LE      N  T+ SV+ ACA LAAL  GK VHA + + 
Sbjct: 255 YAKNEMPMKALELF---QIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR 311

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G  S +   ++L+ MY +CG +     VF  +++++V+ WN++IS +  H    + + +F
Sbjct: 312 GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIF 371

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           E M   G+ P+  T+I+VL ACSH G+VE+ K  F+ M+ ++ + P + HY+CM+DILGR
Sbjct: 372 ENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGR 431

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           A  + EA +LI NM F    ++WGSLL SCR + N+ELAE A+  LF +EP NAGN++LL
Sbjct: 432 ANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLL 491

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
           S+IYA +R W +V R RK +    ++K  S SW+E+K K          +P+I E+ + L
Sbjct: 492 SHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFL 551

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
             L+ E+K  GY P+T    +D+++  K+ +++ HS KLA+ FGL+    G  IRI  NL
Sbjct: 552 ITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNL 611

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCH+FMKF S+   RE ++RD+NRFH F +G CSC D+W
Sbjct: 612 RLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/548 (40%), Positives = 327/548 (59%), Gaps = 9/548 (1%)

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           +G + +   ++ L + YSKCGL+S A +VFD+MPQ+  V+W  +I  Y  NG  + AV  
Sbjct: 300 VGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLS 359

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F +M REG     +    SVL A    +D +  K +H    KA  +  V V  AL+D+YA
Sbjct: 360 FRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYA 419

Query: 182 KCGLISDASRVFESMPER-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           K   +  ASRV +  P   N V+ +SM+ G+++ +  EEAL+++   +  G+E N+FT S
Sbjct: 420 KSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFS 479

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           S+I  CA  A L QG Q+HA + KT    + F  S+LVDMY KCG +  +  +F+ IE +
Sbjct: 480 SMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYR 539

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
             + WN +I+ F++H    E +  F++M  +G+ PN   ++S+L+ACSH G+V++G  YF
Sbjct: 540 TDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYF 599

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             M + H + P   HYSC+ID  GRAG + EAY  I  MP    A  W SLL +CR   +
Sbjct: 600 YSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGS 659

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
            EL E+AA+ L  +EP N G H+ LS IYA+  +WE+V   RKL+RDS +KK    SWV+
Sbjct: 660 KELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVD 719

Query: 481 IKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
              K +        HP+  +IY KLE+L   +K+ GY P+T     ++ED  K+ +L +H
Sbjct: 720 SNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYH 779

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SE++A+ F L+ +    PI + KNLRIC DCH+  KF  ++  R+ IVRD +RFHHF NG
Sbjct: 780 SERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNG 839

Query: 593 SCSCWDFW 600
            CSC D+W
Sbjct: 840 RCSCGDYW 847



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 195/370 (52%), Gaps = 11/370 (2%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCG 82
           A A A    L++L   LQSC R     RG++ HA+++  G     T  +N LI  YS C 
Sbjct: 164 APAAATTVHLASL---LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCA 220

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            ++ A ++F  MP+R  VSW T++   + N    +A+A F  M R G  P + F +SS  
Sbjct: 221 DLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAP-TRFALSSAA 279

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            A AA       +     A     D  +FV + L D+Y+KCGL+S+A RVF+ MP+++ V
Sbjct: 280 RAAAALGAPLRARSCTASA-SVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAV 338

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQGKQVHAV 261
            W++M+ G+ +N   E A++ FR  +  GL   +Q    SV+ A  GL      K +H  
Sbjct: 339 AWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCC 398

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK--NVVLWNTMISGFSRHARSV 319
           + K GF   +   ++L+DMYAK   V  A  V   I+    NVV   +MI G+       
Sbjct: 399 VTKAGFELEVAVRNALIDMYAKSMDVESASRVLK-IDPGGWNVVSGTSMIDGYIETDCVE 457

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E ++++ ++++ G+ PNE T+ S++  C+   ++E+G      ++K  +++ + F  S +
Sbjct: 458 EALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT-DLIRDSFVGSTL 516

Query: 380 IDILGRAGLI 389
           +D+ G+ GLI
Sbjct: 517 VDMYGKCGLI 526



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 194/420 (46%), Gaps = 62/420 (14%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCG 82
           A A A    L++L   LQSC R     RG++ HA+++  G     T  +N LI  YS C 
Sbjct: 14  APAAATTVHLASL---LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCA 70

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY--------- 133
            ++ A ++F  MP+R  VSW T++   + N    +A+A F  M R G  P          
Sbjct: 71  DLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFH 130

Query: 134 --------------------------------------SEFTVSSVLCACAAKRDVFECK 155
                                                 +   ++S+L +C    D+   +
Sbjct: 131 NTLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGR 190

Query: 156 QLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            LH    L  A   + F+   L+ +Y+ C  ++ A R+F +MP RN V+W+++V+G  QN
Sbjct: 191 LLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQN 250

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            ++ +AL  F   +  G+   +F +SS   A A L A ++ +   A     GF + +F A
Sbjct: 251 LMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTAS-ASVGFDTELFVA 309

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL- 333
           S+L DMY+KCG + +A  VF  + +K+ V W  MI G++++      ++ F  M++ GL 
Sbjct: 310 SNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLV 369

Query: 334 HPNEQTYISVLSACSHI--GMVEKG------KSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             ++  + SVLSA   +  G + K       K+ F+L V   N L +++  S  ++   R
Sbjct: 370 GADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASR 429


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/574 (38%), Positives = 340/574 (59%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C+       GK  H +I  +G  +D    N L+  Y+KCG +  AR VF+ +
Sbjct: 171 TLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGL 230

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R IVSW ++I  Y  NG   EA+ +F  M +    P     + SVL A     D+ + 
Sbjct: 231 DDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP-DWIALVSVLRAYTDVEDLEQG 289

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +K  ++    +  +L  +YAKCG +  A   F+ M   N + W++M++G+ +N
Sbjct: 290 KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKN 349

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA+ LF+      +  +  T+ S I ACA + +L   K +   + KT + +++F  
Sbjct: 350 GYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVN 409

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DM+AKCG V  A  VF    +K+VV+W+ MI G+  H R  + + LF  M+QAG+ 
Sbjct: 410 TALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVC 469

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++ +L+AC+H G+VE+G   F  M K + +     HY+C++D+LGR+G ++EAYD
Sbjct: 470 PNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYD 528

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +   S+WG+LL +C+ YR++ L E AA+QLF ++P N G+++ LSN+YA++R 
Sbjct: 529 FITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRL 588

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ VA+ R L+R+  + K+   S +EI GK        ++HPR  EI+ +LE L   +K+
Sbjct: 589 WDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKE 648

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P  E  LHD+    K+E L +HSE+LA+ +GL+   PG  +RI KNLR C +CHS 
Sbjct: 649 AGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSA 708

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S++  RE +VRD NRFHHF NG CSC D+W
Sbjct: 709 TKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 184/357 (51%), Gaps = 3/357 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+++  GL          +N     G I  ARKVFDE P+  +  WN II  Y+++   
Sbjct: 91  HAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFF 150

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +A+ ++  M   G  P   FT+  VL AC+    +   K++H    +   + +VFV   
Sbjct: 151 GDAIEMYSRMQASGVNP-DGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNG 209

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +YAKCG +  A  VFE + +RN V+W+SM++G+ QN L  EAL +F + +   ++ +
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
              + SV+ A   +  L QGK +H  + K G         SL  MYAKCG V+ A   F 
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFD 329

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +E  NV++WN MISG++++  + E + LF++M    +  +  T  S + AC+ +G ++ 
Sbjct: 330 QMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDL 389

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            K   D + K      +VF  + +ID+  + G +  A + + +   D    +W +++
Sbjct: 390 AKWMGDYINKTE-YRNDVFVNTALIDMFAKCGSVDLARE-VFDRTLDKDVVVWSAMI 444



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 134/238 (56%), Gaps = 7/238 (2%)

Query: 132 PYSEFTV----SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
           PYS F      SS+L     KR +    Q+H   + + +  + F+ T  ++     G I 
Sbjct: 64  PYSGFDFDSFFSSLLDHSVHKRHL---NQIHAQLVVSGLVESGFLVTKFVNASWNIGEIG 120

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
            A +VF+  PE +   W++++ G+  +  + +A+ ++ R Q  G+  + FT+  V+ AC+
Sbjct: 121 YARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACS 180

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           G+  L  GK+VH  + + GF S++F  + LV +YAKCG V  A  VF G++++N+V W +
Sbjct: 181 GVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTS 240

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           MISG+ ++   +E + +F +M+Q  + P+    +SVL A + +  +E+GKS    +VK
Sbjct: 241 MISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVK 298


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/543 (40%), Positives = 335/543 (61%), Gaps = 17/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N L++ +  CG I GA +VF  MP R + SWNT++   + NG  +EA A+F  M 
Sbjct: 71  DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++     +++ A A+  D+   + L      A    +  + TA++  Y   G +
Sbjct: 131 ARNAVSWN-----AMVAARASSGDMGAAENLF---RNAPEKTDAILWTAMVSGYMDTGNV 182

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICA 245
             A   F +MP RN V+W+++VAG+V+N    +AL +F+   +   ++ N  T+SSV+  
Sbjct: 183 QKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLG 242

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L+AL  G+QVH    K   G ++   +SL+ MY KCG + DA  +F  +  K++V W
Sbjct: 243 CSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAW 302

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N MISG+++H    + + LFEKM+  G+ P+  T ++VL+AC H G+ + G   F+ M +
Sbjct: 303 NAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQE 362

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            +N+ P V HYSCM+D+L RAGL+  A ++I +MPF+   S +G+LL +CR Y+NLE AE
Sbjct: 363 AYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAE 422

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR 485
            AA++L   +P NAG ++ L+NIYA   RW++V+R R+ ++D+ V K    SW+EIKG R
Sbjct: 423 FAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVR 482

Query: 486 N--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
           +        HP++  I+ KL++L + MK +GY P+ +  LHDVE+S K ++L+ HSEKLA
Sbjct: 483 HEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLA 542

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+   PG+ +RI KNLRICGDCH+  K  S+I  RE I+RD  RFHHF  G CSC 
Sbjct: 543 IAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCG 602

Query: 598 DFW 600
           D+W
Sbjct: 603 DYW 605


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/542 (39%), Positives = 332/542 (61%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D+++ NI++  Y +   +  A   F++MP + I SWNT+I  +  NG+ Q+A  LF  M 
Sbjct: 135 DSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMP 194

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +    +S     +++       D+   ++L+    K    ++V V TA+L  Y K G +
Sbjct: 195 EKNGVSWS-----AMISGYVEHGDLEAAEELY----KNVGMKSVVVETAMLTGYMKFGKV 245

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A R+F+ M  +N VTW+SM+AG+V+N   E+ L +F+      +  N  ++SSV+  C
Sbjct: 246 ELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGC 305

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + L+AL  G+Q+H ++ K+    +  A +SL+ MY KCG +  A+ +F  +  K+V+ WN
Sbjct: 306 SNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWN 365

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MISG+++H    + + LF+KM+   + P+  T+++V+ AC+H G V+ G  YF  M K+
Sbjct: 366 AMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKE 425

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             +     HY+C+ID+LGRAG + EA  LI  MPF   A+++G+LL +CR ++NL+LAE 
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEF 485

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AA+ L  ++P +A  ++ L+NIYAA  +W++VA+ RK++++  V K    SW+EIK    
Sbjct: 486 AARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTH 545

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                 R HP +  I+ KL +L  +MK  GY P+ E  LHDVE+  K++LL+ HSEKLA+
Sbjct: 546 EFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAI 605

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGLM   PG PIR+ KNLR+CGDCH  +KF S I  RE IVRD  RFHHF NG CSC D
Sbjct: 606 AFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGD 665

Query: 599 FW 600
           +W
Sbjct: 666 YW 667



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L + L  C+   A   G+  H  +    L+ DT     LI+ Y KCG +  A K+F EM
Sbjct: 297 SLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM 356

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FE 153
           P++ +++WN +I  Y  +G  ++A+ LF  M R G       T  +V+ AC     V   
Sbjct: 357 PRKDVITWNAMISGYAQHGAGRKALHLFDKM-RNGTMKPDWITFVAVILACNHAGFVDLG 415

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            +       +  ++      T ++D+  + G + +A  + + MP
Sbjct: 416 VQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
           VF  +  +  V WNTM+SG+++ A  V E   LF+K+ +    P+  +Y  +L       
Sbjct: 95  VFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE----PDSVSYNIMLVCYLRSY 150

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            V+   ++F+ M      + ++  ++ +I    + G + +A+DL   MP +     W ++
Sbjct: 151 GVKAALAFFNKM-----PVKDIASWNTLISGFAQNGQMQKAFDLFSVMP-EKNGVSWSAM 204

Query: 412 LASCRNYRNLELAE 425
           ++    + +LE AE
Sbjct: 205 ISGYVEHGDLEAAE 218


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/559 (38%), Positives = 347/559 (62%), Gaps = 18/559 (3%)

Query: 51  RGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           RGK+  A+ + + +   D ++ N +++ Y +   +  A+  F++MP +   SWNT+I  +
Sbjct: 20  RGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGF 79

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             N +  +A  LF+ M  +    ++      V C      D+    +L     + A  ++
Sbjct: 80  AQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECG-----DLDSALKL----FEKAPFKS 130

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           V   TA++  Y K G I  A R+FE MPE+N VTW++M+AG+++N   E+ + LFR    
Sbjct: 131 VVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVG 190

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G++ N  T+SS +  C+ L+AL  G+QVH ++CK+    +  A +SL+ MY KCG + D
Sbjct: 191 FGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLED 250

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
            + +F  +  ++VV WN MISG+++H    + + LF++M + G+ P+  T+++VL AC+H
Sbjct: 251 GWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNH 310

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G  + G  YF  M K + ++    HY+CM+D+LGRAG + EA DLI  MPF   A+++G
Sbjct: 311 AGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFG 370

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL +CR ++N E+AE A+++L  ++P +A  ++ L+N+YAA +RW+ VAR RK ++  +
Sbjct: 371 TLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCK 430

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           V K    SW+E+K        G + HP +A I+ KL++L ++MK  GY P+ E  LHDV 
Sbjct: 431 VVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVG 490

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           + +K++LL+ HSEKLA+ +GL+ L PG PIR+ KNLR+CGDCH  +K+ S+I  RE IVR
Sbjct: 491 EEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVR 550

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D  RFHHF +G CSC D+W
Sbjct: 551 DTTRFHHFKDGHCSCADYW 569



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 2/165 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL + L  C+   A   G+  H  +    L +DT     LI+ Y KCG++    K+F +
Sbjct: 198 STLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQ 257

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-AKRDVF 152
           +P+R +V+WN +I  Y  +G  ++A+ LF  M+ +G  P    T  +VL AC  A     
Sbjct: 258 VPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKP-DWITFVAVLMACNHAGFTDL 316

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
             K  H  A    +       T ++D+  + G + +A  + E MP
Sbjct: 317 GVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMP 361



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 130/290 (44%), Gaps = 29/290 (10%)

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR-------- 225
           + L  +  K G + +A  +F  +PE + V++++M++ +V+N   E A   F         
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTP 70

Query: 226 --RAQVLGLEYNQ-----------FTISSVICACAGLAALIQGKQVHAVLC---KTGFGS 269
                + G   NQ               +V+   A ++  ++   + + L    K  F S
Sbjct: 71  SWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKS 130

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            + A ++++  Y K G +  A  +F  + EKN+V WN MI+G+  + R+ + + LF  M 
Sbjct: 131 -VVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMV 189

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ PN  T  S L  CS +  ++ G+    L+ K   +  +    + +I +  + G++
Sbjct: 190 GFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS-PLCDDTTAGTSLISMYCKCGVL 248

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPD 437
            + + L + +P     + W ++++    +   + A     ++   GM+PD
Sbjct: 249 EDGWKLFVQVPRRDVVT-WNAMISGYAQHGEGKKALGLFDEMIEKGMKPD 297


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/559 (39%), Positives = 333/559 (59%), Gaps = 15/559 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  I+  G + D   +  LI  YS  G +  ARKVFD+  +R I  WN +  + T  G  
Sbjct: 100 HRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHG 159

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----DVFECKQLHVFALKAAMDRNVF 171
           +E + L+  M R G      FT + VL AC A       + + K++H    +     +V+
Sbjct: 160 EEVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVY 218

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA--QV 229
           + T L+D+YA+ G +  AS VF  MP RN V+WS+M+A + +N    EAL  FR    + 
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET 278

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
                N  T+ SV+ ACA LAAL QGK +H  + + G  S +   S+LV MY +CG +  
Sbjct: 279 KDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEV 338

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
              VF  + +++VV WN++IS +  H    + + +FE+M   G  P   T++SVL ACSH
Sbjct: 339 GQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSH 398

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+VE+GK  F+ M + H + P + HY+CM+D+LGRA  + EA  ++ +M  +    +WG
Sbjct: 399 EGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLL SCR + N+ELAE A+++LF +EP NAGN++LL++IYA  + W+EV R +KL+    
Sbjct: 459 SLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRG 518

Query: 470 VKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           ++K   + W+E++ K          +P + +I++ L KL E+MK+ GY P+T+  L+++E
Sbjct: 519 LQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELE 578

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
              K+ +++ HSEKLAL FGL+    G PIRI KNLR+C DCH F KF S+   +E +VR
Sbjct: 579 TEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVR 638

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D+NRFH F NG CSC D+W
Sbjct: 639 DVNRFHRFKNGVCSCGDYW 657



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 173/323 (53%), Gaps = 17/323 (5%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +S N +I S    G+ ++A    I +L +  +P S+ T   ++  C  +  + +  ++H 
Sbjct: 47  ISNNQLIQSLCKEGKLKQA----IRVLSQESSP-SQQTYELLILCCGHRSSLSDALRVHR 101

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             L    D++ F+ T L+ +Y+  G +  A +VF+   +R    W+++          EE
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAAS 275
            L L+ +   +G+E ++FT + V+ AC      +  L++GK++HA L + G+ S+++  +
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMT 221

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGL 333
           +LVDMYA+ GCV  A +VF G+  +NVV W+ MI+ ++++ ++ E +  F +M  +    
Sbjct: 222 TLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDS 281

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNVFHYSCMIDILGRAGLIHE 391
            PN  T +SVL AC+ +  +E+GK     ++++   ++LP +   S ++ + GR G + E
Sbjct: 282 SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKL-E 337

Query: 392 AYDLILNMPFDATASMWGSLLAS 414
               + +   D     W SL++S
Sbjct: 338 VGQRVFDRMHDRDVVSWNSLISS 360



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 138/271 (50%), Gaps = 5/271 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           ++GK  HA +   G ++       L++ Y++ G +  A  VF  MP R +VSW+ +I  Y
Sbjct: 199 MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY 258

Query: 110 TTNGREQEAVALFINMLREGK--TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
             NG+  EA+  F  M+RE K  +P S  T+ SVL ACA+   + + K +H + L+  +D
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSPNS-VTMVSVLQACASLAALEQGKLIHGYILRRGLD 317

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
             + V +AL+ +Y +CG +    RVF+ M +R+ V+W+S+++ +  +   ++A+ +F   
Sbjct: 318 SILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEM 377

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGC 286
              G      T  SV+ AC+    + +GK++   + +  G    +   + +VD+  +   
Sbjct: 378 LANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANR 437

Query: 287 VVDAYFVFSGIE-EKNVVLWNTMISGFSRHA 316
           + +A  +   +  E    +W +++     H 
Sbjct: 438 LDEAAKMVQDMRTEPGPKVWGSLLGSCRIHG 468



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + LQ+CA   A  +GK+ H  I+  GL++     + L+  Y +CG +   ++VFD M
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRM 346

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN++I SY  +G  ++A+ +F  ML  G +P +  T  SVL AC+ +  V E 
Sbjct: 347 HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASP-TPVTFVSVLGACSHEGLVEEG 405

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM-PERNEVTWSSMVA 209
           K+L         +   +     ++D+  +   + +A+++ + M  E     W S++ 
Sbjct: 406 KRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/542 (39%), Positives = 336/542 (61%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +++ Y++ G ++ AR++FD  P R + +W  I+  Y  NG  +EA  +F  M 
Sbjct: 292 DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP 351

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +    ++     +++ A   +R + E K+L      A   RNV     +L  YA+ G++
Sbjct: 352 DKNAVSWN-----AMMAAYVQRRMMEEAKEL----FDAMPCRNVASWNTMLTGYAQAGML 402

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A  +F  MP+++ V+W++M+A + Q    EE L LF+     G   N+   + V+  C
Sbjct: 403 DEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTC 462

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  G Q+H+ L K G+G   F  ++L+ MY KCG + +A+  F  +EE++VV WN
Sbjct: 463 ADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWN 522

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    E + +F+ M++    P++ T + VL+ACSH G+VEKG SYF  M + 
Sbjct: 523 TMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRD 582

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V     HY+CMID+LGRAG + EA +L+ +MPF+  ++MWG+LL + R +RN EL   
Sbjct: 583 FGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRN 642

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
           AA+++F +EP+NAG ++LLSNIYA++ +W +V + R ++ +  VKK    SW+E++ K +
Sbjct: 643 AAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVH 702

Query: 487 --------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                   HP   +IY+ LE L   MKK GY   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 703 TFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAV 762

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            +G++ + PG PIR++KNLR+C DCH+  K  S I GR  I+RD NRFHHF +GSCSC D
Sbjct: 763 AYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGD 822

Query: 599 FW 600
           +W
Sbjct: 823 YW 824



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 170/384 (44%), Gaps = 43/384 (11%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++ AR+R+  R        I    + + +  N  I  + + G +  A ++F  MP+R  
Sbjct: 79  LRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRST 138

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF----TVSSVLCACAAKRDVFECK 155
            ++NT++  Y  NGR  +A++ F ++ R     Y+       VSS L    A  D    K
Sbjct: 139 STYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVK 198

Query: 156 Q--------------------LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
                                 H F L  A +++      +L  Y + G I +A  +F+S
Sbjct: 199 DSVSYNVMISSHANHGLVSLARHYFDL--APEKDAVSWNGMLAAYVRNGRIQEARELFDS 256

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
             E + ++W++++AG+VQ    EEA  +F +      + +  + ++++   A    + + 
Sbjct: 257 RTEWDAISWNALMAGYVQRSQIEEAQKMFNKMP----QRDVVSWNTMVSGYARRGDMAEA 312

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +++  V        ++F  +++V  YA+ G + +A  VF  + +KN V WN M++ + + 
Sbjct: 313 RRLFDVAPI----RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQR 368

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               E   LF+ M       N  ++ ++L+  +  GM+++ ++ F +M ++  V      
Sbjct: 369 RMMEEAKELFDAMPCR----NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAV-----S 419

Query: 376 YSCMIDILGRAGLIHEAYDLILNM 399
           ++ M+    + G   E   L   M
Sbjct: 420 WAAMLAAYSQIGFSEETLQLFKEM 443



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S     L +CA   A   G   H+++I  G        N L+  Y KCG +  A   F+E
Sbjct: 453 SAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEE 512

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R +VSWNT+I  Y  +G  +EA+ +F + +R+  T   + T+  VL AC+    V  
Sbjct: 513 MEERDVVSWNTMIAGYARHGFGKEALEVF-DTMRKTSTKPDDITLVGVLAACSHSGLVE- 570

Query: 154 CKQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
            K +  F    +M R+  V T       ++D+  + G + +A  + + MP E +   W +
Sbjct: 571 -KGISYF---YSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGA 626

Query: 207 MVA 209
           ++ 
Sbjct: 627 LLG 629


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 329/554 (59%), Gaps = 9/554 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA +   G   D   SN L+  Y K G +    K+++ M  R ++SWN  +     
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G     + +F +ML EG  P + +T  S+L +C+   DV   +Q+H   +K  +D N F
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIP-NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF 552

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V TAL+D+YAKC  + DA   F  +  R+  TW+ ++  + Q    E+AL  FR+ Q  G
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ N+FT++  +  C+ LA+L  G+Q+H+++ K+G  S+MF  S+LVDMYAKCGC+ +A 
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  +  ++ + WNT+I G++++ +  + +  F  M   G+ P+  T+  +LSACSH G
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQG 732

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+GK +F+ M +   + P V H +CM+DILGR G   E  D I  M     A +W ++
Sbjct: 733 LVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETV 792

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L + + + NL L E AA +LF ++P+   +++LLSNI+A   RW++V R R L+    VK
Sbjct: 793 LGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVK 852

Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           KE   SWVE  G+         +HP+I EI+ KL++L  E+  + Y P+TE+ LH+V ++
Sbjct: 853 KEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGET 912

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
            K+E L  HSE+LAL F L+       IRI KNLRIC DCH  MK  S I  +E +VRD+
Sbjct: 913 EKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDV 972

Query: 584 NRFHHFTNGSCSCW 597
            RFHHF NG+CSC+
Sbjct: 973 RRFHHFKNGACSCF 986



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/410 (31%), Positives = 220/410 (53%), Gaps = 8/410 (1%)

Query: 9   HKFYYK-SFSSSAIASASAN----ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMG 63
           H F Y+ +F       A  N    ++  +L    + L+ CA +R+    K  H  I+   
Sbjct: 83  HNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDV 142

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           +N D+     L+N Y+KC   + AR V  +MP R +VSW  +I      G   +++ LF 
Sbjct: 143 INPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQ 202

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M  EG  P +EFT+++ L AC+    +   KQ+H  A K  +  ++FVG+AL+D+YAKC
Sbjct: 203 EMQNEGIMP-NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC 261

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G I  AS++F  MPE+N+VTW+ ++ G+ Q       L LF     L ++ N+FT+++V+
Sbjct: 262 GEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVL 321

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
             CA    L QG+ +H+++ K G+  N F    LVDMY+KCG  +DA  VF  I++ ++V
Sbjct: 322 KGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIV 381

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +W+ +I+   +  +S E + LF  M+     PN+ T  S+LSA ++ G ++ G+S     
Sbjct: 382 VWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS-IHAC 440

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           V ++    +V   + ++ +  + G +H+   L  +M  D     W + L+
Sbjct: 441 VWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLS 489



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 192/358 (53%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+ CA  +   +G+V H+ II  G   +      L++ YSKCGL   A  VF  +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  IV W+ +I      G+ +E++ LF +++R G T  +++T+ S+L A     ++   
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H    K   + +V V  AL+ +Y K G + D ++++ESM +R+ ++W++ ++G    
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +Y+  L +F      G   N +T  S++ +C+ L  +  G+QVHA + K     N F  
Sbjct: 495 GMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC 554

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKC  + DA   F+ +  +++  W  +I+ +++  +  + +  F +MQQ G+ 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           PNE T    LS CS +  +E G+    ++ K  +V  ++F  S ++D+  + G + EA
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV-SDMFVGSALVDMYAKCGCMEEA 671



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 196/364 (53%), Gaps = 3/364 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++C+   A   GK  HA+   +GL  D    + L++ Y+KCG I  A K+F  M
Sbjct: 215 TLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGM 274

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++  V+WN ++  Y   G     + LF +M+ E     +EFT+++VL  CA  +++ + 
Sbjct: 275 PEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMM-ELDVKCNEFTLTTVLKGCANSKNLKQG 333

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H   +K   + N F+G  L+D+Y+KCGL  DA  VF+++ + + V WS+++    Q 
Sbjct: 334 QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQ 393

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EE++ LF   ++     NQ+TI S++ A      L  G+ +HA + K GF +++  +
Sbjct: 394 GQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVS 453

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV MY K GCV D   ++  + +++++ WN  +SG          + +F  M + G  
Sbjct: 454 NALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI 513

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+IS+L +CS +  V  G+     ++K + +  N F  + +ID+  +   + +A D
Sbjct: 514 PNMYTFISILGSCSCLFDVHYGRQVHAHIIK-NQLDDNNFVCTALIDMYAKCMYLEDA-D 571

Query: 395 LILN 398
           +  N
Sbjct: 572 VAFN 575



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 11/181 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L  C+   +   G+  H+ +   G  +D    + L++ Y+KCG +  A  +F+ +
Sbjct: 619 TLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL 678

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R  ++WNTII  Y  NG+  +A+  F  ML EG +P    T + +L AC+ +  V E 
Sbjct: 679 IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISP-DGVTFTGILSACSHQGLVEEG 737

Query: 155 KQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
           K+        F +   +D        ++D+  + G   +     + M   +N + W +++
Sbjct: 738 KEHFNSMYRDFGISPTVDH----CACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 209 A 209
            
Sbjct: 794 G 794


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/541 (39%), Positives = 345/541 (63%), Gaps = 15/541 (2%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           A+  ASA  +  E     A + +C   RA   G+  HA++I             L+  Y 
Sbjct: 2   ALPGASARFHEYE-----AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYV 56

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
           +CG +  AR V D MP+R +VSW T+I  Y+   R  EA+ LFI MLR G  P +E+T++
Sbjct: 57  RCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIP-NEYTLA 115

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           +VL +C+  + +++ KQ+H   +K   + ++FVG++LLD+YAK   I +A RVF+++PER
Sbjct: 116 TVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPER 175

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V+ +++++G+ Q  L EEAL LFR+    G++ N  T ++++ A +GLA+L  GKQVH
Sbjct: 176 DVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVH 235

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A++ +      +   +SL+DMY+KCG ++ +  VF  + E++VV WN M+ G+ RH    
Sbjct: 236 ALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGH 295

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           EV+ LF+ + +  + P+  T ++VLS CSH G+V++G   FD +VK+ + L +  HY C+
Sbjct: 296 EVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCI 354

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           ID+LGR+G + +A +LI NMPF++T S+WGSLL +CR + N+ + E+ A++L  MEP+NA
Sbjct: 355 IDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENA 414

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           GN+++LSNIYAA   W++V + RKL+ +  V KE  +SW+ +          +R HP   
Sbjct: 415 GNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKK 474

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           +I +K++++  ++K  G+ P+    LHDV+D +K+ +L+ HSEKLA+TFGLM   PG+ I
Sbjct: 475 DINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTI 534

Query: 552 R 552
           R
Sbjct: 535 R 535


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/577 (40%), Positives = 329/577 (57%), Gaps = 13/577 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++ A  + P+ GK  H   +  G+  D        + Y K G    A  +FDEM
Sbjct: 110 TFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEM 169

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           PQR + +WN  I +   + R  +A+  F   L     P S  T  + L AC     +   
Sbjct: 170 PQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNS-ITFCAFLNACVDMVRLNLG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQ 213
           +QLH F ++     +V V   L+D Y KCG I  A  VF  +  R N V+W SM+A  VQ
Sbjct: 229 RQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQ 288

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   E A ++F +A+   +E   F ISSV+ ACA L  L  G+ VHA+  K     N+F 
Sbjct: 289 NHEEERACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFV 347

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA-- 331
            S+LVDMY KCG + +A  VFS + E+N+V WN MI G++        + LFE+M     
Sbjct: 348 GSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSH 407

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P+  T IS+LS CS +G VE+G   F+ M   + + P   H++C++D+LGR+GL+  
Sbjct: 408 GIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDR 467

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY+ I NM    T S+WG+LL +CR +   EL +IAA++LF ++  ++GNH++LSN+ A+
Sbjct: 468 AYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLAS 527

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
             RWEE    RK ++D  +KK    SW+ +K +         +H R +EI + L KL   
Sbjct: 528 AGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGG 587

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           MK+ GY P+T   L D+ED  K   + +HSEK+AL FGL+ L  GVPIRI KNLRICGDC
Sbjct: 588 MKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDC 647

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HS +KF SRI GRE IVRD +RFH F +G CSC D+W
Sbjct: 648 HSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/392 (30%), Positives = 200/392 (51%), Gaps = 8/392 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEM 94
           L + L+S       + G+  HA II   +    +  SN L+N YSK  L++ A+ V    
Sbjct: 9   LGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLT 68

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+W ++I     N R   A+  F NM R+   P ++FT   V  A A  +     
Sbjct: 69  HLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQP-NDFTFPCVFKASAFVQIPMTG 127

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H  ALK  M  +VFVG +  D+Y K G   DA  +F+ MP+RN  TW++ ++  VQ+
Sbjct: 128 KQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQD 187

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               +A++ F+    +  E N  T  + + AC  +  L  G+Q+HA + + G+  ++  A
Sbjct: 188 RRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVA 247

Query: 275 SSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSR-HARSVEVMILFEKMQQAG 332
           + L+D Y KCG +V A  VF+ I   KNVV W +M++   + H      M+  +  ++  
Sbjct: 248 NGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE-- 305

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P +    SVLSAC+ +G +E G+S   L VK   V  N+F  S ++D+ G+ G I  A
Sbjct: 306 VEPTDFMISSVLSACAELGGLELGRSVHALAVKA-CVEDNIFVGSALVDMYGKCGSIENA 364

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELA 424
             +   +P +     W +++    +  ++++A
Sbjct: 365 EQVFSELP-ERNLVTWNAMIGGYAHQGDIDMA 395


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/574 (37%), Positives = 346/574 (60%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C        GK  H          +      LI+ Y K G +  A +VF+EM
Sbjct: 248 TFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  ++ W+ +I  Y  + + +EA+ +F  M R G    ++FT++S+L ACA+  D+   
Sbjct: 308 PKDDVIPWSFMIARYAQSEQSEEAIEMFCRM-RRGLVLPNQFTLASLLQACASLVDLQLG 366

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H   +K  +D NVFV  AL+D+YAKCG + ++ ++F   P   +V+W++++ G+VQ 
Sbjct: 367 NQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQA 426

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+ALILF+      ++  + T SSV+ ACAG+AAL  G Q+H++  KT +  N    
Sbjct: 427 GNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVG 486

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG + DA  VF  + E + V WN MISG+S H    E +  FE M +    
Sbjct: 487 NALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECK 546

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++ T++ +LSACS+ G++++G++YF  MV+++++ P   HY+CM+ +LGR+G + +A  
Sbjct: 547 PDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAK 606

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+  +PF+ +  +W +LL++C  + ++EL  I+A+++  +EP++   H+LLSNIYA  RR
Sbjct: 607 LVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARR 666

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W  VA  R  ++   ++KE   SW+E +G+         +HP    I   LE L  + + 
Sbjct: 667 WGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARN 726

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    L DVED  K++ L  HSE+LAL +GL+      P+RI+KNLRIC DCH+ 
Sbjct: 727 EGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAA 786

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  R+ I+RD+NRFHHF  G CSC D+W
Sbjct: 787 IKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/421 (32%), Positives = 219/421 (52%), Gaps = 10/421 (2%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           +SF +   + +S   N     +L   LQSC R      GK  H +II  G   D   +NI
Sbjct: 28  RSFLAQRTSHSSPEFNTYIYGSL---LQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNI 84

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK--T 131
           L+NFY K   +  A K+FDEMP R  VS+ T+I  Y+   R  EA+ LF  +  EG    
Sbjct: 85  LLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELN 144

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P+   TV  +L +    +  F    +H    K   D + FVGTAL+D Y+ CG    A +
Sbjct: 145 PFVFSTVLKLLVSAEWAKLGF---SVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQ 201

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+++  ++ V+W+ MVA +V+NE +EE+L LF R +++G + N FT +SV+ AC GL  
Sbjct: 202 VFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEV 261

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
              GK VH    KT +   +F    L+D+Y K G V DA  VF  + + +V+ W+ MI+ 
Sbjct: 262 FNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIAR 321

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +++  +S E + +F +M++  + PN+ T  S+L AC+ +  ++ G      +VK   +  
Sbjct: 322 YAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKV-GLDM 380

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
           NVF  + ++D+  + G +  +  L    P + T   W +++       N E A I  K +
Sbjct: 381 NVFVSNALMDMYAKCGRMENSLQLFSESP-NCTDVSWNTVIVGYVQAGNGEKALILFKDM 439

Query: 432 F 432
            
Sbjct: 440 L 440


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/610 (36%), Positives = 350/610 (57%), Gaps = 41/610 (6%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDT---------------------- 68
           T  S     +QSC   ++   GK  H  ++  G ++D                       
Sbjct: 42  TNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAV 101

Query: 69  ---------LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119
                    ++SNILIN Y + G +  ARKVFDEMP R + +WN +I         +E +
Sbjct: 102 YGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGL 161

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           +LF  M   G +P  E+T+ SV    A  R V   +Q+H + +K  ++ ++ V ++L  +
Sbjct: 162 SLFREMHGLGFSP-DEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHM 220

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y + G + D   V  SMP RN V W++++ G  QN   E  L L++  ++ G   N+ T 
Sbjct: 221 YMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF 280

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            +V+ +C+ LA   QG+Q+HA   K G  S +   SSL+ MY+KCGC+ DA   FS  E+
Sbjct: 281 VTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERED 340

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           ++ V+W++MIS +  H +  E + LF  M +Q  +  NE  ++++L ACSH G+ +KG  
Sbjct: 341 EDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLE 400

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            FD+MV+++   P + HY+C++D+LGRAG + +A  +I +MP      +W +LL++C  +
Sbjct: 401 LFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIH 460

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
           +N E+A+   K++  ++P+++  ++LL+N++A+ +RW +V+  RK +RD  VKKE   SW
Sbjct: 461 KNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISW 520

Query: 479 VEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
            E KG+        R+  +  EIYS L++L  EMK  GYKP+T   LHD+++  K+  L+
Sbjct: 521 FEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLV 580

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
            HSEKLA+ F LM L  G PIRI+KNLR+C DCH   K+ S I  RE  +RD +RFHHF 
Sbjct: 581 QHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFI 640

Query: 591 NGSCSCWDFW 600
           NG CSC D+W
Sbjct: 641 NGKCSCGDYW 650



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 37/225 (16%)

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA   FR    L +  N    +  I +C    +L  GKQ+H +L  +GF S+ F  + L+
Sbjct: 31  EAFQRFR----LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLM 86

Query: 279 DMYAK-------------------------------CGCVVDAYFVFSGIEEKNVVLWNT 307
            MY+K                                G +V+A  VF  + ++ +  WN 
Sbjct: 87  SMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNA 146

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI+G  +   + E + LF +M   G  P+E T  SV S  + +  V  G+      +K  
Sbjct: 147 MIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYG 206

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             L  V + S +  +  R G + +   +I +MP     + W +L+
Sbjct: 207 LELDLVVN-SSLAHMYMRNGKLQDGEIVIRSMPVRNLVA-WNTLI 249


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/569 (39%), Positives = 329/569 (57%), Gaps = 11/569 (1%)

Query: 42  SCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV 100
           +CA  R    G   HA  +  G L  D   S   ++ Y K G +  AR++F+EMP R ++
Sbjct: 122 ACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVI 181

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           +WN ++ +   +GR  E    +  +   G  P +  +V +   ACA    +   +Q H F
Sbjct: 182 AWNAVMTNAVIDGRPLETFKAYFGLREAGGMP-NVVSVCAFFNACAGAMFLSLGEQFHGF 240

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
            +    D +V V  A++D Y KC     A  VF+ M  RN V+W SM+  + Q+   E+A
Sbjct: 241 VVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDA 300

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           L ++  A+  G E   F +SSV+  CAGL  L  G+ +HAV  ++   +N+F AS+LVDM
Sbjct: 301 LAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDM 360

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQT 339
           Y KCG V DA  VF  + E+N+V WN MI G++    +   + +F+ M +  G  PN  T
Sbjct: 361 YGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHIT 420

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            ++V++ACS  G+ + G   FD M ++  V P   HY+C++D+LGRAG+   AY++I  M
Sbjct: 421 LVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRM 480

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P   + S+WG+LL +C+ +   EL  IA+++LF ++P ++GNH+LLSN+ A+  RW E  
Sbjct: 481 PMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEAT 540

Query: 460 RARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
             RK +++  +KKE   SW+  K            H R +EI + L KL ++M+  GY P
Sbjct: 541 DVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMP 600

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T++ L+DVE+  K+  +  HSEKLAL FGL+ + P VPIRI KNLRIC DCH   KF S
Sbjct: 601 DTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVS 660

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            I GRE IVRD NRFH+F    CSC D+W
Sbjct: 661 GIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 201/435 (46%), Gaps = 16/435 (3%)

Query: 28  ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI---LINFYSKCGLI 84
           A A +   L A  ++    R+P  G+  HA+   + L +  L   I   L+N YSK  L 
Sbjct: 4   AAAADPQLLGAAFEAAISSRSPRLGRAAHAR--ALRLLSPGLPPFICAHLVNLYSKLDLP 61

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-- 142
           + A       P   +VS+   I     + R   A++ F  MLR G  P ++FT  S    
Sbjct: 62  AAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRP-NDFTFPSAFKA 120

Query: 143 CACAAKRDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
            ACA  R      Q+H  AL+   +  + FV  A +D+Y K G +  A R+FE MP RN 
Sbjct: 121 AACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNV 180

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           + W++++   V +    E    +   +  G   N  ++ +   ACAG   L  G+Q H  
Sbjct: 181 IAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGF 240

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           +   GF  ++  ++++VD Y KC C   A  VF G+  +N V W +MI  +++H    + 
Sbjct: 241 VVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDA 300

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           + ++   +  G  P +    SVL+ C+ +  +  G++   + V+   +  N+F  S ++D
Sbjct: 301 LAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRS-CIDANIFVASALVD 359

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM--EPDNA 439
           + G+ G + +A  + L+MP +     W +++     Y ++  A+ A      M      +
Sbjct: 360 MYGKCGGVEDAEQVFLDMP-ERNLVTWNAMIG---GYAHIGDAQNALAVFDAMIRSGGTS 415

Query: 440 GNHLLLSNIYAANRR 454
            NH+ L N+  A  R
Sbjct: 416 PNHITLVNVITACSR 430



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 156/321 (48%), Gaps = 35/321 (10%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A   +CA       G+  H  ++  G + D   SN +++FY KC     AR VFD M  R
Sbjct: 220 AFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVR 279

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
             VSW ++I +Y  +G E++A+A+++     G+ P ++F VSSVL  CA    +   + L
Sbjct: 280 NSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEP-TDFMVSSVLTTCAGLLGLNFGRAL 338

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A+++ +D N+FV +AL+D+Y KCG + DA +VF  MPERN VTW++M+ G+      
Sbjct: 339 HAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDA 398

Query: 218 EEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           + AL +F    +  G   N  T+ +VI AC+       G ++   +         F    
Sbjct: 399 QNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTM------RERFGVEP 452

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
             + YA   CVVD     +G+EE+                        +E +Q+  + P+
Sbjct: 453 RTEHYA---CVVD-LLGRAGMEER-----------------------AYEIIQRMPMRPS 485

Query: 337 EQTYISVLSACSHIGMVEKGK 357
              + ++L AC   G  E G+
Sbjct: 486 ISVWGALLGACKMHGKTELGR 506


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/541 (39%), Positives = 333/541 (61%), Gaps = 10/541 (1%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           ++SNILIN Y + G +  ARKVFDEMP R + +WN +I         +E ++LF  M   
Sbjct: 24  MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 83

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G +P  E+T+ SV    A  R V   +Q+H + +K  ++ ++ V ++L  +Y + G + D
Sbjct: 84  GFSP-DEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 142

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
              V  SMP RN V W++++ G  QN   E  L L++  ++ G   N+ T  +V+ +C+ 
Sbjct: 143 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 202

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LA   QG+Q+HA   K G  S +   SSL+ MY+KCGC+ DA   FS  E+++ V+W++M
Sbjct: 203 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 262

Query: 309 ISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           IS +  H +  E + LF  M +Q  +  NE  ++++L ACSH G+ +KG   FD+MV+++
Sbjct: 263 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 322

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
              P + HY+C++D+LGRAG + +A  +I +MP      +W +LL++C  ++N E+A+  
Sbjct: 323 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 382

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--- 484
            K++  ++P+++  ++LL+N++A+ +RW +V+  RK +RD  VKKE   SW E KG+   
Sbjct: 383 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 442

Query: 485 -----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
                R+  +  EIYS L++L  EMK  GYKP+T   LHD+++  K+  L+ HSEKLA+ 
Sbjct: 443 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 502

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           F LM L  G PIRI+KNLR+C DCH   K+ S I  RE  +RD +RFHHF NG CSC D+
Sbjct: 503 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDY 562

Query: 600 W 600
           W
Sbjct: 563 W 563



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 31/210 (14%)

Query: 179 VYAKCG----------------------LIS---------DASRVFESMPERNEVTWSSM 207
           +Y+K G                      LI+         +A +VF+ MP+R   TW++M
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +AG +Q E  EE L LFR    LG   +++T+ SV    AGL ++  G+Q+H    K G 
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGL 120

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             ++   SSL  MY + G + D   V   +  +N+V WNT+I G +++     V+ L++ 
Sbjct: 121 ELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKM 180

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           M+ +G  PN+ T+++VLS+CS + +  +G+
Sbjct: 181 MKISGCRPNKITFVTVLSSCSDLAIRGQGQ 210



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 153/306 (50%), Gaps = 6/306 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL +     A  R+   G+  H   I  GL  D + ++ L + Y + G +     V   M
Sbjct: 91  TLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSM 150

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WNT+I     NG  +  + L+  M   G  P ++ T  +VL +C+      + 
Sbjct: 151 PVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRP-NKITFVTVLSSCSDLAIRGQG 209

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A+K      V V ++L+ +Y+KCG + DA++ F    + +EV WSSM++ +  +
Sbjct: 210 QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFH 269

Query: 215 ELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC-KTGFGSNMF 272
              +EA+ LF   A+   +E N+    +++ AC+      +G ++  ++  K GF   + 
Sbjct: 270 GQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLK 329

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             + +VD+  + GC+  A  +   +  K ++V+W T++S  + H  +     +F+++ Q 
Sbjct: 330 HYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ- 388

Query: 332 GLHPNE 337
            + PN+
Sbjct: 389 -IDPND 393


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/542 (39%), Positives = 332/542 (61%), Gaps = 17/542 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D+++ NI++  Y +   +  A   F++MP + I SWNT+I  +  NG+ Q+A  LF  M 
Sbjct: 135 DSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMP 194

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +    +S     +++       D+   ++L+    K    ++V V TA+L  Y K G +
Sbjct: 195 EKNGVSWS-----AMISGYVEHGDLEAAEELY----KNVGMKSVVVETAMLTGYMKFGKV 245

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A R+F+ M  +N VTW+SM+AG+V+N   E+ L +F+      +  N  ++SSV+  C
Sbjct: 246 ELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGC 305

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + L+AL  G+Q+H ++ K+    +  A +SL+ MY KCG +  A+ +F  +  K+V+ WN
Sbjct: 306 SNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWN 365

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MISG+++H    + + LF+KM+   + P+  T+++V+ AC+H G V+ G  YF  M K+
Sbjct: 366 AMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKE 425

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             +     HY+C+ID+LGRAG + EA  LI  MPF   A+++G+LL +CR ++NL+LAE 
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEF 485

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AA+ L  ++P +A  ++ L+NIYAA  +W++VA+ RK++++  V K    SW+EIK    
Sbjct: 486 AARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTH 545

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                 R HP +  I+ KL +L  +MK  GY P+ E  LHDVE+  K++LL+ HSEKLA+
Sbjct: 546 EFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAI 605

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGLM   PG PIR+ KNLR+CGDCH  +KF S I  RE IVRD  RFHHF NG CSC D
Sbjct: 606 AFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGD 665

Query: 599 FW 600
           +W
Sbjct: 666 YW 667



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L + L  C+   A   G+  H  +    L+ DT     LI+ Y KCG +  A K+F EM
Sbjct: 297 SLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM 356

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FE 153
           P++ ++SWN +I  Y  +G  ++A+ LF  M R G       T  +V+ AC     V   
Sbjct: 357 PRKDVISWNAMISGYAQHGAGRKALHLFDKM-RNGTMKPDWITFVAVILACNHAGFVDLG 415

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            +       +  ++      T ++D+  + G + +A  + + MP
Sbjct: 416 VQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
           VF  +  +  V WNTM+SG+++ A  V E   LF+K+ +    P+  +Y  +L       
Sbjct: 95  VFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE----PDSVSYNIMLVCYLRSY 150

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            VE   ++F+ M      + ++  ++ +I    + G + +A+DL   MP +     W ++
Sbjct: 151 GVEAALAFFNKM-----PVKDIASWNTLISGFAQNGQMQKAFDLFSVMP-EKNGVSWSAM 204

Query: 412 LASCRNYRNLELAE 425
           ++    + +LE AE
Sbjct: 205 ISGYVEHGDLEAAE 218


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/570 (39%), Positives = 331/570 (58%), Gaps = 14/570 (2%)

Query: 44  ARERAPVR---GKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           A   AP R   G   H+  I  G L  D   S   ++ Y K G +  AR +F EMP R +
Sbjct: 126 AAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNV 185

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+WN ++ +   +GR  E +  +  +   G  P +  +  +   ACA    +   +Q H 
Sbjct: 186 VAWNAVMTNAVLDGRPLETIEAYFGLREAGGLP-NVVSACAFFNACAGAMYLSLGEQFHG 244

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F +K   + +V V  +++D Y KC     A  VF+ M  RN V+W SMVA + QN   EE
Sbjct: 245 FVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEE 304

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A   +  A+  G E   F +SS +  CAGL  L  G+ +HAV  ++   +N+F AS+LVD
Sbjct: 305 AFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVD 364

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ 338
           MY KCGCV DA  +F    ++N+V WN MI G++    +   +++F+ M ++G   PN  
Sbjct: 365 MYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYI 424

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T ++V+++CS  G+ + G   F+ M ++  + P   HY+C++D+LGRAG+  +AY++I  
Sbjct: 425 TLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQG 484

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP   + S+WG+LL +C+ +   EL  IAA++LF ++P ++GNH+LLSN++A+  RW E 
Sbjct: 485 MPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEA 544

Query: 459 ARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYK 510
              RK +++  +KK+   SWV  K            H    EI + L KL ++M+  GY 
Sbjct: 545 TDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYM 604

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
           P+T++ L+D+E+  K+  +  HSEKLAL FGL+C+ PGVPIRIMKNLRIC DCH   KF 
Sbjct: 605 PDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFI 664

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S I GRE IVRD NRFHHF    CSC D+W
Sbjct: 665 SGIVGREIIVRDNNRFHHFKQYQCSCGDYW 694



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 9/305 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A   +CA       G+  H  ++  G   D    N +++FY KC     AR VFD M  R
Sbjct: 225 AFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVR 284

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
             VSW +++ +Y  NG E+EA A ++   R G+ P ++F VSS L  CA    +   + L
Sbjct: 285 NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEP-TDFMVSSALTTCAGLLGLHLGRAL 343

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A+++ +D N+FV +AL+D+Y KCG + DA ++F   P+RN VTW++M+ G+      
Sbjct: 344 HAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDA 403

Query: 218 EEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLC-KTGFGSNMFAAS 275
           + AL++F      G    N  T+ +VI +C+       G ++   +  + G        +
Sbjct: 404 QNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYA 463

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKM-----Q 329
            +VD+  + G    AY V  G+  + ++ +W  ++     H ++    I  EK+     Q
Sbjct: 464 CVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQ 523

Query: 330 QAGLH 334
            +G H
Sbjct: 524 DSGNH 528



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 172/371 (46%), Gaps = 11/371 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI---LINFYSKCGLISGARKVFD 92
           L A  +S    R+P  G+  HA+   + L    L+  I   L+N YSK  L + A     
Sbjct: 18  LAAAFESAIASRSPRLGRAAHAR--ALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALA 75

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL--CACAAKRD 150
             P   +VS+   I     +GR   A++ F  MLR G  P ++FT  S     A A  R 
Sbjct: 76  SDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRP-NDFTFPSAFKAAASAPPRS 134

Query: 151 VFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
                Q+H  A++   +  + FV  A LD+Y K G +  A  +F  MP RN V W++++ 
Sbjct: 135 TIG-PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT 193

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
             V +    E +  +   +  G   N  +  +   ACAG   L  G+Q H  + K GF  
Sbjct: 194 NAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEM 253

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   +S+VD Y KC C   A  VF G+  +N V W +M++ ++++    E    +   +
Sbjct: 254 DVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR 313

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           ++G  P +    S L+ C+ +  +  G++   + V+   +  N+F  S ++D+ G+ G +
Sbjct: 314 RSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRS-CIDANIFVASALVDMYGKCGCV 372

Query: 390 HEAYDLILNMP 400
            +A  +    P
Sbjct: 373 EDAEQIFYETP 383



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           + + L +CA       G+  HA  +   ++ +   ++ L++ Y KCG +  A ++F E P
Sbjct: 324 VSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVF 152
           QR +V+WN +IG Y   G  Q A+ +F +M+R G+T  +  T+ +V+ +C+     +D +
Sbjct: 384 QRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY 443

Query: 153 ECKQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVA 209
           E  +     F ++   +    V    +D+  + G+   A  V + MP R  ++ W +++ 
Sbjct: 444 ELFETMRERFGIEPRTEHYACV----VDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLG 499


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/541 (39%), Positives = 333/541 (61%), Gaps = 10/541 (1%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           ++SNILIN Y + G +  ARKVFDEMP R + +WN +I         +E ++LF  M   
Sbjct: 26  MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 85

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G +P  E+T+ SV    A  R V   +Q+H + +K  ++ ++ V ++L  +Y + G + D
Sbjct: 86  GFSP-DEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
              V  SMP RN V W++++ G  QN   E  L L++  ++ G   N+ T  +V+ +C+ 
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LA   QG+Q+HA   K G  S +   SSL+ MY+KCGC+ DA   FS  E+++ V+W++M
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 264

Query: 309 ISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           IS +  H +  E + LF  M +Q  +  NE  ++++L ACSH G+ +KG   FD+MV+++
Sbjct: 265 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 324

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
              P + HY+C++D+LGRAG + +A  +I +MP      +W +LL++C  ++N E+A+  
Sbjct: 325 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 384

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--- 484
            K++  ++P+++  ++LL+N++A+ +RW +V+  RK +RD  VKKE   SW E KG+   
Sbjct: 385 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 444

Query: 485 -----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
                R+  +  EIYS L++L  EMK  GYKP+T   LHD+++  K+  L+ HSEKLA+ 
Sbjct: 445 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 504

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           F LM L  G PIRI+KNLR+C DCH   K+ S I  RE  +RD +RFHHF NG CSC D+
Sbjct: 505 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDY 564

Query: 600 W 600
           W
Sbjct: 565 W 565



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 31/212 (14%)

Query: 177 LDVYAKCG----------------------LIS---------DASRVFESMPERNEVTWS 205
           + +Y+K G                      LI+         +A +VF+ MP+R   TW+
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +M+AG +Q E  EE L LFR    LG   +++T+ SV    AGL ++  G+Q+H    K 
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKY 120

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   ++   SSL  MY + G + D   V   +  +N+V WNT+I G +++     V+ L+
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           + M+ +G  PN+ T+++VLS+CS + +  +G+
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQ 212



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 153/306 (50%), Gaps = 6/306 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL +     A  R+   G+  H   I  GL  D + ++ L + Y + G +     V   M
Sbjct: 93  TLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSM 152

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WNT+I     NG  +  + L+  M   G  P ++ T  +VL +C+      + 
Sbjct: 153 PVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRP-NKITFVTVLSSCSDLAIRGQG 211

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A+K      V V ++L+ +Y+KCG + DA++ F    + +EV WSSM++ +  +
Sbjct: 212 QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFH 271

Query: 215 ELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC-KTGFGSNMF 272
              +EA+ LF   A+   +E N+    +++ AC+      +G ++  ++  K GF   + 
Sbjct: 272 GQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLK 331

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             + +VD+  + GC+  A  +   +  K ++V+W T++S  + H  +     +F+++ Q 
Sbjct: 332 HYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ- 390

Query: 332 GLHPNE 337
            + PN+
Sbjct: 391 -IDPND 395


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/580 (40%), Positives = 350/580 (60%), Gaps = 15/580 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL ++L SCA  +    G+  H + + +G++ +   SN L+  Y++ G ++  RK+F  M
Sbjct: 417 TLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSM 476

Query: 95  PQRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P+   VSWN+IIG+   + R   EAV  F+N  R G+   +  T SSVL A ++      
Sbjct: 477 PEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQ-KLNRITFSSVLSAVSSLSFGEL 535

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE-VTWSSMVAGFV 212
            KQ+H  ALK  +        AL+  Y KCG +    ++F  M ER + VTW+SM++G++
Sbjct: 536 GKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYI 595

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            NEL  +AL L       G   + F  ++V+ A A +A L +G +VHA   +    S++ 
Sbjct: 596 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 655

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             S+LVDMY+KCG +  A   F+ +  +N   WN+MISG++RH +  E + LFE M+  G
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDG 715

Query: 333 LHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
             P +  T++ VLSACSH G++E+G  +F+ M   + + P + H+SCM D+LGRAG + +
Sbjct: 716 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDK 775

Query: 392 AYDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
             D I  MP      +W ++L +C   N R  EL + AA+ LF +EP+NA N++LL N+Y
Sbjct: 776 LEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 835

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           AA  RWE++ +ARK ++D++VKKE   SWV +K        G ++HP    IY KL++L 
Sbjct: 836 AAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELN 895

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL-CPGVPIRIMKNLRIC 560
            +M+  GY P+T   L+D+E   K+E+L +HSEKLA+ F L       +PIRIMKNLR+C
Sbjct: 896 RKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVC 955

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCHS  K+ S+I GR+ I+RD NRFHHF +G+CSC DFW
Sbjct: 956 GDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 179/356 (50%), Gaps = 6/356 (1%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           GL  D    + L++ ++K G +S ARKVF++M  R  V+ N ++         +EA  LF
Sbjct: 238 GLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLF 297

Query: 123 INM---LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM-DRNVFVGTALLD 178
           ++M   +      Y     S    + A +  + + +++H   +   + D  V +G  L++
Sbjct: 298 MDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVN 357

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +YAKCG I+DA RVF  M +++ V+W+SM+ G  QN  + EA+  ++  +   +    FT
Sbjct: 358 MYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFT 417

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + S + +CA L     G+Q+H    K G   N+  +++L+ +YA+ G + +   +FS + 
Sbjct: 418 LISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP 477

Query: 299 EKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           E + V WN++I   +R  RS+ E ++ F   Q+AG   N  T+ SVLSA S +   E GK
Sbjct: 478 EHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGK 537

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
               L +K +N+       + +I   G+ G +     +   M        W S+++
Sbjct: 538 QIHGLALK-NNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMIS 592



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 163/356 (45%), Gaps = 27/356 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           +QSC   R   R    H+++    L+ D    N LIN Y + G    ARKVFDEMP R  
Sbjct: 10  VQSCVGHRGAAR--FFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNC 67

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRDVFECKQL 157
           VSW  I+  Y+ NG  +EA+    +M++EG    +++   SVL AC       +   +Q+
Sbjct: 68  VSWACIVSGYSRNGEHKEALVFLRDMVKEGIFS-NQYAFVSVLRACQEIGSVGILFGRQI 126

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           H    K +   +  V   L+ +Y KC G +  A   F  +  +N V+W+S+++ + Q   
Sbjct: 127 HGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGD 186

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAA----LIQGKQVHAVLCKTGFGSNMF 272
              A  +F   Q  G    ++T  S++     L      L++  Q+   + K+G  +++F
Sbjct: 187 QRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLE--QIMCTIQKSGLLTDLF 244

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             S LV  +AK G +  A  VF+ +E +N V  N ++ G  R     E   LF  M    
Sbjct: 245 VGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM- 303

Query: 333 LHPNEQTYISVLSACSHIGMVE-----KGK---------SYFDLMVKQHNVLPNVF 374
           +  + ++Y+ +LS+     + E     KG+            D MV   N L N++
Sbjct: 304 IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMY 359


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 352/618 (56%), Gaps = 47/618 (7%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL--- 83
            A A     L   L+ CA       G+  H  I+  G+  D +  N +++ Y+KCG    
Sbjct: 120 GATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGR 179

Query: 84  ----------------------------ISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
                                       + GA ++FDE   R + SWNTI+     +G  
Sbjct: 180 ARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHT 239

Query: 116 QEAVALFINMLREGKTPYSEFTVSSV--LCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
            EA+     M+R G T +S +T S V  L    + RD+   +QLH   + A ++ + FVG
Sbjct: 240 TEALGRLQQMVRAGVT-FSNYTYSMVFALAGLLSSRDL--GRQLHGRVVVAVLEEDAFVG 296

Query: 174 TALLDVYAKCGLISDASRVFE---SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            +L+D+Y KCG +  A  +F+      E  +  WS+MVAG+VQN   EEAL  FRR    
Sbjct: 297 CSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLRE 356

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+   QF ++SV  ACA    + QG+QVH  + K G   +   AS++VDMY+K G + DA
Sbjct: 357 GVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDA 416

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             +F   + KNV LW TM+  ++ H +    + +F +M+   + PNE T ++VLSACSH 
Sbjct: 417 CRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHS 476

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G+V  G  YF+LM +++ ++PN  HY+CM+D+ GRAGL+ +A + I        A +W +
Sbjct: 477 GLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKT 536

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL++CR ++++E A++A+++L  +E  +AG+++L+SN+YA N +W +  + R  +++  V
Sbjct: 537 LLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRV 596

Query: 471 KKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           +K+  +SW+ +K           +HPR AEIY+ LEKL+E +K++GY   T+  +HD+E+
Sbjct: 597 RKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEE 656

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
            +++  L  HSEKLA+ FG++    G  +RI KNLR+C DCH  +KF +R   RE +VRD
Sbjct: 657 EQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRD 716

Query: 583 LNRFHHFTNGSCSCWDFW 600
           L RFHHF +G CSC DFW
Sbjct: 717 LYRFHHFKDGQCSCEDFW 734



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 181/403 (44%), Gaps = 57/403 (14%)

Query: 47  RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           R  VRG V  + +I  GL+N                    A +VFD  P R + +W +II
Sbjct: 57  RQSVRGCVPSSSVIARGLHN--------------------AHRVFDGTPTRSLPAWTSII 96

Query: 107 GSYTTNGREQEAVALFINMLRE-GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA 165
                 GR  + +  F  ML E G T  + F ++ VL  CA   DV   +++H + L++ 
Sbjct: 97  SGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSG 156

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPE--------------------------- 198
           +  +V +  A+LD+YAKCG    A R F +M +                           
Sbjct: 157 VCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFD 216

Query: 199 ----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
               R+  +W+++V+G +++    EAL   ++    G+ ++ +T S V      L++   
Sbjct: 217 ESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDL 276

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF---SGIEEKNVVLWNTMISG 311
           G+Q+H  +       + F   SL+DMY KCG +  A  +F   S   E     W+TM++G
Sbjct: 277 GRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAG 336

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           + ++ R  E +  F +M + G+   +    SV SAC++ GMVE+G+     + K  +   
Sbjct: 337 YVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFD 396

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
                S ++D+  ++G + +A   I         ++W ++L S
Sbjct: 397 APL-ASAIVDMYSKSGSLEDACR-IFRSAQTKNVALWTTMLCS 437


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 351/578 (60%), Gaps = 16/578 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+  + ++ CA  +     +  H  ++  G   D      L+  YSKC  +  A ++F E
Sbjct: 300 SSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKE 359

Query: 94  MP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
                 +VSW  +I  +  N  ++EAV LF  M R+G  P +EFT S +L A      V 
Sbjct: 360 TGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRP-NEFTYSVILTALP----VI 414

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              ++H   +K   +R+  VGTALLD Y K G + +A++VF  +  ++ V WS+M+AG+ 
Sbjct: 415 SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYA 474

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL-AALIQGKQVHAVLCKTGFGSNM 271
           Q    E A+ +F      G++ N+FT SS++  CA   A++ QGKQ H    K+   S++
Sbjct: 475 QAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSL 534

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             +S+L+ MYAK G +  A  VF    EK++V WN+MISG+++H ++++ + +F++M++ 
Sbjct: 535 CVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 594

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            +  +  T+I V +AC+H G+VE+G+ YFD+MV+   + P   H SCM+D+  RAG + +
Sbjct: 595 KVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 654

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A  +I NMP  A +++W ++LA+CR ++  EL  +AA+++  M P+++  ++LLSN+YA 
Sbjct: 655 AMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAE 714

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
           +  W+E A+ RKL+ +  VKKE   SW+E+K        G R+HP   +IY KLE L   
Sbjct: 715 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTR 774

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +K LGY+P+T + L D++D  K+ +L  HSE+LA+ FGL+    G P+ I+KNLR+CGDC
Sbjct: 775 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 834

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHF-TNGSCSCWDFW 600
           H  +K  ++I  RE +VRD NRFHHF ++G CSC DFW
Sbjct: 835 HVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 186/333 (55%), Gaps = 7/333 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L   A E    RG   H  ++  GL+     SN LIN Y KCG +  AR +FD+ 
Sbjct: 200 TFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKT 259

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V+WN++I  Y  NG + EA+ +F +M R      SE + +S++  CA  +++   
Sbjct: 260 EVKSVVTWNSMISGYAANGLDLEALGMFYSM-RLNHVRLSESSFASIIKLCANLKELRFT 318

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF-ESMPERNEVTWSSMVAGFVQ 213
           +QLH   +K     +  + TAL+  Y+KC  + DA R+F E+    N V+W++M++GF+Q
Sbjct: 319 EQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQ 378

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N+  EEA+ LF   +  G+  N+FT S ++ A      +I   +VHA + KT +  +   
Sbjct: 379 NDGKEEAVGLFSEMKRKGVRPNEFTYSVILTAL----PVISPSEVHAQVVKTNYERSSTV 434

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+D Y K G V +A  VFSGI+ K++V W+ M++G+++   +   + +F ++ + G+
Sbjct: 435 GTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGV 494

Query: 334 HPNEQTYISVLSAC-SHIGMVEKGKSYFDLMVK 365
            PNE T+ S+L+ C +    + +GK +    +K
Sbjct: 495 KPNEFTFSSILNVCAATTASMGQGKQFHGFAIK 527



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 162/305 (53%), Gaps = 4/305 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H + I  G  +D      L++ Y K       R VFDEM +R +V+W T+I  Y  
Sbjct: 116 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N   +E + LF+ M  EG  P S FT ++ L   A +       Q+H   +K  +D+ + 
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNS-FTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIP 234

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  +L+++Y KCG +  A  +F+    ++ VTW+SM++G+  N L  EAL +F   ++  
Sbjct: 235 VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNH 294

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  ++ + +S+I  CA L  L   +Q+H  + K GF  +    ++L+  Y+KC  ++DA 
Sbjct: 295 VRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDAL 354

Query: 292 FVF--SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
            +F  +G    NVV W  MISGF ++    E + LF +M++ G+ PNE TY  +L+A   
Sbjct: 355 RLFKETGF-LGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPV 413

Query: 350 IGMVE 354
           I   E
Sbjct: 414 ISPSE 418



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 148/265 (55%), Gaps = 3/265 (1%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG-KTPYSEFTVSSVLCAC 145
           A  +FD+ P R   S+ +++  ++ +GR QEA  LF+N+   G +   S F  SSVL   
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIF--SSVLKVS 107

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           A   D    +QLH   +K     +V VGT+L+D Y K     D   VF+ M ERN VTW+
Sbjct: 108 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWT 167

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           ++++G+ +N L EE L LF R Q  G + N FT ++ +   A      +G QVH V+ K 
Sbjct: 168 TLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 227

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G    +  ++SL+++Y KCG V  A  +F   E K+VV WN+MISG++ +   +E + +F
Sbjct: 228 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 287

Query: 326 EKMQQAGLHPNEQTYISVLSACSHI 350
             M+   +  +E ++ S++  C+++
Sbjct: 288 YSMRLNHVRLSESSFASIIKLCANL 312



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 33/270 (12%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  +F+  P+R+  +++S++ GF ++   +EA  LF   Q LG+E +    SSV+   A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L   + G+Q+H    K GF  ++   +SLVD Y K     D   VF  ++E+NVV W T+
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG--------KSYF 360
           ISG++R++ + EV+ LF +MQ  G  PN  T+ + L   +  G+  +G        K+  
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 361 DLMVKQHNVLPNVF----------------------HYSCMIDILGRAGLIHEAYDLILN 398
           D  +   N L N++                       ++ MI      GL  EA  +  +
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 399 MPFD---ATASMWGSLLASCRNYRNLELAE 425
           M  +    + S + S++  C N + L   E
Sbjct: 290 MRLNHVRLSESSFASIIKLCANLKELRFTE 319


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 330/554 (59%), Gaps = 9/554 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H   + +G + +   ++ L + YSK GL+  A +VFD+MPQ+  V+W  +I  Y  NG  
Sbjct: 142 HCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNL 201

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           + AV  F +M REG     +  + SVL A    +D +  + +H   +K+  ++ V V  A
Sbjct: 202 EAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNA 261

Query: 176 LLDVYAKCGLISDASRVFE-SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           L D+YAK   + +A+RV +      N V+ +S++ G+++ +  E+AL++F   +  G+E 
Sbjct: 262 LTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEP 321

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N+FT SS+I  CA  A L QG Q+HA + KT   S+ F +S+L+DMY KCG +  +  +F
Sbjct: 322 NEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLF 381

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             IE    + WN  I+  ++H    E +  F++M  +G+ PN  T++S+L+ACSH G+V+
Sbjct: 382 KEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVD 441

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +G  YF  M   H + P   HYSC+ID+ GRAG + EA   I  MP    A  W SLL +
Sbjct: 442 EGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGA 501

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEK 474
           CR   N EL EIAA  +  +EPDN G H+ LS IYA+  +WE+V   RKL+RD+ +KK  
Sbjct: 502 CRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLP 561

Query: 475 SKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
             SWV+   K +        HP+  +IY KLE+L E +K+ GY P+T     ++ED+ KQ
Sbjct: 562 GFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQ 621

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
            +L +HSE++A+ F L+ +    PI + KNLRIC DCHS +KF S++  R+ IVRD +RF
Sbjct: 622 RILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRF 681

Query: 587 HHFTNGSCSCWDFW 600
           HHF  G CSC D+W
Sbjct: 682 HHFVKGGCSCGDYW 695



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 196/358 (54%), Gaps = 7/358 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEM 94
           L A LQSC R      G+  HA+++  G     T  +N LI  YS C  +  A ++FD M
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAM 79

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  +VSW T++   T N   ++A+A F +M R G  P ++F +SS   A AA       
Sbjct: 80  PRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVP-TQFALSSAARAAAALAARHAG 138

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            QLH   ++   D  +FV + L D+Y+K GL+ +A RVF+ MP+++ V W++M+ G+ +N
Sbjct: 139 AQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKN 198

Query: 215 ELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
              E A+I FR  +  GL   +Q  + SV+ A  GL      + +H+ + K+GF   +  
Sbjct: 199 GNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAV 258

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEK--NVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            ++L DMYAK   + +A  V   I++   NVV   ++I G+       + +++F ++++ 
Sbjct: 259 RNALTDMYAKAADMDNAARVVK-IDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQ 317

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           G+ PNE T+ S++  C+   ++E+G      ++K  +++ + F  S ++D+ G+ GLI
Sbjct: 318 GVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKT-SLISDSFVSSTLLDMYGKCGLI 374



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 136/262 (51%), Gaps = 10/262 (3%)

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
           +   +++ L +C    D+   + LH    L  A   + F+   L+ +Y+ C  +  A R+
Sbjct: 16  TSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRL 75

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F++MP  N V+W+++V+G  QN ++ +AL  F      GL   QF +SS   A A LAA 
Sbjct: 76  FDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAAR 135

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             G Q+H V  + GF + +F AS+L DMY+K G +V+A  VF  + +K+ V W  MI G+
Sbjct: 136 HAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGY 195

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHI--GMVEKG------KSYFDLM 363
           +++      +I F  M++ GL   +Q  + SVLSA   +  G + +       KS F+  
Sbjct: 196 AKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQE 255

Query: 364 VKQHNVLPNVFHYSCMIDILGR 385
           V   N L +++  +  +D   R
Sbjct: 256 VAVRNALTDMYAKAADMDNAAR 277


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/576 (35%), Positives = 346/576 (60%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T    L++C+       G+  HA++  +G + D    N LI  Y+KC  +  AR VF+  
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            +P+R IVSW  I+ +Y  NG   EA+ +F +M +    P     + SVL A    +D+ 
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKP-DWVALVSVLNAFTCLQDLK 239

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + + +H   +K  ++    +  +L  +YAKCG ++ A  +F+ M   N + W++M++G+ 
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +N    EA+ +F       +  +  +I+S I ACA + +L Q + ++  + ++ +  ++F
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +S+L+DM+AKCG V  A  VF    +++VV+W+ MI G+  H R+ E + L+  M++ G
Sbjct: 360 ISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +HPN+ T++ +L AC+H GMV +G  +F+LM   H + P   HY+C+ID+LGRAG + +A
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQA 478

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y++I  MP     ++WG+LL++C+ +R++EL E AA+QLF ++P N G+++ LSN+YAA 
Sbjct: 479 YEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAA 538

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
           R W+ VA  R  +++  + K+   SWVE++G+        ++HPR  EI  ++E +   +
Sbjct: 539 RLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRL 598

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K+ G+    +  LHD+ D   +E L  HSE++A+ +GL+    G P+RI KNLR C +CH
Sbjct: 599 KEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCH 658

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  K  S++  RE +VRD NRFHHF +G CSC D+W
Sbjct: 659 AATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 208/399 (52%), Gaps = 17/399 (4%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           +++S I S S  A+  + +T +A L            K  HA+++ +GL         LI
Sbjct: 13  YTNSGIHSDSFYASLIDSATHKAQL------------KQIHARLLVLGLQFSGFLITKLI 60

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           +  S  G I+ AR+VFD++P+  I  WN II  Y+ N   Q+A+ ++ NM     +P S 
Sbjct: 61  HASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDS- 119

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT   +L AC+    +   + +H    +   D +VFV   L+ +YAKC  +  A  VFE 
Sbjct: 120 FTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEG 179

Query: 196 --MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
             +PER  V+W+++V+ + QN    EAL +F   + + ++ +   + SV+ A   L  L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLK 239

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           QG+ +HA + K G         SL  MYAKCG V  A  +F  ++  N++LWN MISG++
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           ++  + E + +F +M    + P+  +  S +SAC+ +G +E+ +S ++  V + +   +V
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEY-VGRSDYRDDV 358

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           F  S +ID+  + G + E   L+ +   D    +W +++
Sbjct: 359 FISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMI 396


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/583 (38%), Positives = 346/583 (59%), Gaps = 19/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDE 93
           T ++ L + AR R        H ++    +  +D   S  LI  Y+    +  AR+VFDE
Sbjct: 250 TYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQVFDE 309

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF- 152
            P + I  WN ++ +       +EA+    +M R G  P   ++ +  L AC A      
Sbjct: 310 APVKNIFVWNAMLKALALADHGEEALTCLADMGRLG-VPVDSYSYAHGLKACIAASASHL 368

Query: 153 ----ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
                 +++H  A++     +  V T L+D YAK G++S A RVF SMP+RN V+WS+M+
Sbjct: 369 PASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMI 428

Query: 209 AGFVQNELYEEALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
             + +NE   +A+ +F+   A    L  N  TI SV+ ACAG+ AL QGK +HA + + G
Sbjct: 429 GCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRG 488

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILF 325
           F   +   ++L+ MY KCGC+    ++F+ I   +NVV WN++ISG+  H    E + +F
Sbjct: 489 FDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVF 548

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           E+M + G+ PN  T++SVL ACSH+G+VE+GK  F+ MV ++NV P   HY+CM+D+LGR
Sbjct: 549 EEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGR 607

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           AG + EA +LI +M    +  +WGSLL +CR + ++E AE+A   LF +EP NAGN++LL
Sbjct: 608 AGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLL 667

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
           ++IYA  +   +V   ++L+ +  ++K    SW+E+K K          +P++ E+ + +
Sbjct: 668 ADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALI 727

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
            + V +MK  GY P+T   L+D+E+  K+ +L+ HSEKLA+ FGL+    G  IRI KNL
Sbjct: 728 GEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNL 787

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCHS  KF S+   RE +VRD+NRFHHF NG CSC D+W
Sbjct: 788 RLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830


>gi|255549476|ref|XP_002515791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545119|gb|EEF46630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 352

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/299 (69%), Positives = 240/299 (80%), Gaps = 2/299 (0%)

Query: 52  GKVCHAK-IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           GK CHA+ I+  GL  DTLTSN+LIN YSKCG I  ARKVFD+M  R +VSWNT+IG+YT
Sbjct: 3   GKACHAQAILHFGLTADTLTSNMLINVYSKCGRIDCARKVFDKMLGRSLVSWNTMIGTYT 62

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NG EQ+A+ LF+ M REG  P+SEFTVS+VLCA AAK   F CKQLH FA+K AMD NV
Sbjct: 63  QNGEEQKALGLFLEMQREGN-PFSEFTVSTVLCASAAKSYTFVCKQLHAFAMKVAMDANV 121

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           ++ TALLDVYAK GLI +  RVFE M ER  VTWSSMVAG+VQNELYEEAL  F RA+ +
Sbjct: 122 YISTALLDVYAKSGLIKEGIRVFEGMSERTAVTWSSMVAGYVQNELYEEALASFNRARAI 181

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GLEYNQFTISSV CACAGLAA I+G+QVHAV+CKTGFGSN + ASSLVDMYAKCG V +A
Sbjct: 182 GLEYNQFTISSVSCACAGLAASIEGRQVHAVVCKTGFGSNSYVASSLVDMYAKCGSVKEA 241

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           Y  F   +  N+VLWN MIS F++H+ S+EVMILFEKMQQ G+HP+E TY+SVLSACSH
Sbjct: 242 YIAFLDAQRTNIVLWNVMISAFAKHSHSLEVMILFEKMQQIGMHPDEVTYVSVLSACSH 300



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 149/278 (53%), Gaps = 4/278 (1%)

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
           L   +  +      L++VY+KCG I  A +VF+ M  R+ V+W++M+  + QN   ++AL
Sbjct: 12  LHFGLTADTLTSNMLINVYSKCGRIDCARKVFDKMLGRSLVSWNTMIGTYTQNGEEQKAL 71

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            LF   Q  G  +++FT+S+V+CA A  +     KQ+HA   K    +N++ +++L+D+Y
Sbjct: 72  GLFLEMQREGNPFSEFTVSTVLCASAAKSYTFVCKQLHAFAMKVAMDANVYISTALLDVY 131

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           AK G + +   VF G+ E+  V W++M++G+ ++    E +  F + +  GL  N+ T  
Sbjct: 132 AKSGLIKEGIRVFEGMSERTAVTWSSMVAGYVQNELYEEALASFNRARAIGLEYNQFTIS 191

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           SV  AC+ +    +G+    ++ K      N +  S ++D+  + G + EAY   L+   
Sbjct: 192 SVSCACAGLAASIEGRQVHAVVCKT-GFGSNSYVASSLVDMYAKCGSVKEAYIAFLDAQ- 249

Query: 402 DATASMWGSLLAS-CRNYRNLELAEIAAK-QLFGMEPD 437
                +W  ++++  ++  +LE+  +  K Q  GM PD
Sbjct: 250 RTNIVLWNVMISAFAKHSHSLEVMILFEKMQQIGMHPD 287



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ +   +CA   A + G+  HA +   G  +++  ++ L++ Y+KCG +  A   F + 
Sbjct: 189 TISSVSCACAGLAASIEGRQVHAVVCKTGFGSNSYVASSLVDMYAKCGSVKEAYIAFLDA 248

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
            +  IV WN +I ++  +    E + LF  M + G  P  E T  SVL AC+
Sbjct: 249 QRTNIVLWNVMISAFAKHSHSLEVMILFEKMQQIGMHP-DEVTYVSVLSACS 299


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 334/590 (56%), Gaps = 52/590 (8%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K++    + D LT   ++  Y + G ++ AR VF+E+  +  V WN +I  Y  +G   +
Sbjct: 224 KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCAD 283

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV--------FALKAAMDRN 169
           A  LF  M+ E K P  EFT +SVL ACA        K +H         F  +AA+  N
Sbjct: 284 AFELFRRMVSE-KVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 342

Query: 170 VFVGTALLDVYAKCGLISDASRVFESM-------------------------------PE 198
                AL+ +Y+K G I  A R+F++M                               P 
Sbjct: 343 ----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 398

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +N+++W  MV+G+V   L E+AL LF + +   ++   +T +  I AC  L AL  G+Q+
Sbjct: 399 KNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQL 458

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA L + GF ++  A ++L+ MYAKCG V DA  VF  +   + V WN MIS   +H   
Sbjct: 459 HAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHG 518

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E + LF++M   G+ P+  +++++L+AC+H G+V++G  YF+ M +   + P   HY+ 
Sbjct: 519 REALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYAR 578

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           +ID+LGR+G I EA DLI  MPF+ T S+W ++L+ CR   ++E    AA QLF M P +
Sbjct: 579 LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH 638

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRI 490
            G ++LLSN Y+A  RW + AR RKL+RD  VKKE   SW+E+         G   HP  
Sbjct: 639 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEA 698

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
            E+Y  LE +   M+KLGY P+T+  LHD+E   K+ +L  HSEKLA+ FGL+ L PG  
Sbjct: 699 QEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT 758

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + ++KNLRICGDCH+ M F S+  GRE +VRD+ RFHHF +G CSC ++W
Sbjct: 759 VTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 176/384 (45%), Gaps = 50/384 (13%)

Query: 74  LINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           L+  ++  G +  A   FD +P  +R  V  N ++ ++        AV++F  +L  G  
Sbjct: 100 LVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSL 159

Query: 132 PYSEFTVSSVLCACAAKRDVF--ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS-- 187
              +++ ++++ A     ++    C QLH   LK+     + V  AL+ +Y KC      
Sbjct: 160 RPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEAS 219

Query: 188 -DASRVFESMPERNEVTWSSMV-------------------------------AGFVQNE 215
            DA +V + MP+++++TW++MV                               +G+VQ+ 
Sbjct: 220 WDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSG 279

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA- 274
           +  +A  LFRR     +  ++FT +SV+ ACA     + GK VH  + +        AA 
Sbjct: 280 MCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAAL 339

Query: 275 ---SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++LV +Y+K G +V A  +F  +  K+VV WNT++SG+       + + +F+ M   
Sbjct: 340 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP-- 397

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
             + N+ +++ ++S   H G+ E     F+ M +  +V P  + Y+  I   G  G +  
Sbjct: 398 --YKNDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYAGAIAACGELGALKH 454

Query: 392 AYDL---ILNMPFDATASMWGSLL 412
              L   ++   F+A+ S   +LL
Sbjct: 455 GRQLHAHLVQCGFEASNSAGNALL 478



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 36/313 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----NDTLTSNILINFYSKCGLISGARKV 90
           T  + L +CA     V GK  H +II +  N         +N L+  YSK G I  A+++
Sbjct: 302 TFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRI 361

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALF---------------------------- 122
           FD M  + +VSWNTI+  Y  +G   +AV +F                            
Sbjct: 362 FDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDAL 421

Query: 123 --INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
              N +R       ++T +  + AC     +   +QLH   ++   + +   G ALL +Y
Sbjct: 422 KLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMY 481

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           AKCG ++DA  VF  MP  + V+W++M++   Q+    EAL LF +    G++ ++ +  
Sbjct: 482 AKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFL 541

Query: 241 SVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE- 298
           +++ AC     + +G      + +  G        + L+D+  + G + +A  +   +  
Sbjct: 542 TILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPF 601

Query: 299 EKNVVLWNTMISG 311
           E    +W  ++SG
Sbjct: 602 EPTPSIWEAILSG 614


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 339/568 (59%), Gaps = 11/568 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  CA+    + G + H  ++  GL++D   SN LIN YSK G +  A+ VFD+M
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN+II +Y  N     A+  F  M   G  P    TV S+    +   D    
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP-DLLTVVSLTSIFSQLSDQRIS 342

Query: 155 KQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           + +  F ++   +D++V +G AL+++YAK G ++ A  VF+ +P ++ ++W+++V G+ Q
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402

Query: 214 NELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N L  EA+  +    +      NQ T  S+I A + + AL QG ++HA L K     ++F
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVF 462

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A+ L+D+Y KCG + DA  +F  I     V WN +I+    H R  E + LF+ M    
Sbjct: 463 VATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAER 522

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  +  T++S+LSACSH G+V++G+  FD+M K++ + P++ HY CM+D+LGRAG + +A
Sbjct: 523 VKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKA 582

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y+L+ NMP    AS+WG+LL++C+ Y N EL  +A+ +L  ++ +N G ++LLSNIYA  
Sbjct: 583 YELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANT 642

Query: 453 RRWEEVARARKLIRDSEVKKEK--------SKSWVEIKGKRNHPRIAEIYSKLEKLVEEM 504
            +WE V + R L RD  ++K          SK+ V   G + HP+  EIY +L+ L  +M
Sbjct: 643 EKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKM 702

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K LGY P+      D+E+  K+++L  HSE+LA+ FG++   P  PIRI KNLR+CGDCH
Sbjct: 703 KSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCH 762

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNG 592
           +  K+ SRI+ RE +VRD NRFHHF +G
Sbjct: 763 NATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 212/416 (50%), Gaps = 21/416 (5%)

Query: 1   MKSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKII 60
           M SLL+   KFY      SA  S   +A+        A   SC    A    K  HA ++
Sbjct: 1   MLSLLKSVSKFY-----KSATTSLHKDAD------FNALFNSCVNVNAT---KKLHALLL 46

Query: 61  GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA-- 118
             G + + + S  LIN Y   G IS +R  FD + ++ I SWN+II +Y   G+  EA  
Sbjct: 47  VFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMN 106

Query: 119 -VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
            V    +M   G      +T   +L AC +   + + K++H    K   + +VFV  +L+
Sbjct: 107 CVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLV 163

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
            +Y++ G++  A +VF  MP ++  +W++M++GF QN     AL +  R +  G++ +  
Sbjct: 164 HLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTI 223

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T++S++  CA    +I G  +H  + K G  S++F +++L++MY+K G + DA  VF  +
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           E +++V WN++I+ + ++      +  F+ MQ  G+ P+  T +S+ S  S +      +
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           S    ++++  +  +V   + ++++  + G ++ A+ +   +P   T S W +L+ 
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTIS-WNTLVT 398



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           K++HA+L   G   N+  ++ L+++Y   G +  +   F  I +KN+  WN++IS + R 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 316 ARSVEVM----ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            +  E M     LF       L P+  T+  +L AC  + +V+  K +    V +     
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLVDGKKVH--CCVFKMGFED 154

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRN 417
           +VF  + ++ +  R G++  A+ + ++MP     S W ++++  C+N
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS-WNAMISGFCQN 200


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 343/588 (58%), Gaps = 40/588 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV----------- 100
           G+  H +I+ +G      T + L++ Y+K GLI  A++VFDEM  + +V           
Sbjct: 168 GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLR 227

Query: 101 --------------------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                               +W T++   T NG + EA+ +F  M  EG     ++T  S
Sbjct: 228 CKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEG-VGIDQYTFGS 286

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC A     E KQ+H + ++   D N+FVG+AL+D+Y+KC  I  A  VF  M  +N
Sbjct: 287 ILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKN 346

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W++M+ G+ QN   EEA+ +F   Q  G++ N FT+ SVI +CA LA+L +G Q H 
Sbjct: 347 IISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHC 406

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +   +G    +  +S+LV +Y KCG + DA+ +F  +   + V +  ++SG+++  ++ E
Sbjct: 407 MALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKE 466

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM   G+ PN  T+I VLSACS  G+VEKG SYF  M + H ++    HY+CMI
Sbjct: 467 TIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMI 526

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+  R+G + EA + I  MP    A  W +LL++CR   ++E+ + AA+ L   +P N  
Sbjct: 527 DLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPA 586

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
           +++LL +++A+   W EVA  R+ +RD +VKKE   SW++ K +        ++HP    
Sbjct: 587 SYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGT 646

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY KL+ L  +M + GYKP+    LHDV D+ K  +L +HSEKLA+ FGL+ +   +PIR
Sbjct: 647 IYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIR 706

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++KNLR+C DCH+  KF S+I GR+ +VRD  RFH F+NG CSC DFW
Sbjct: 707 VVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 191/374 (51%), Gaps = 38/374 (10%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + +  T N L++  +   L+    ++F  MPQR  VS+N +I  ++  G    A   +  
Sbjct: 73  DPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRA 132

Query: 125 MLRE------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           +LRE       +   S  T+S ++ A +A  D    +Q+H   ++       F  + L+D
Sbjct: 133 LLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVD 192

Query: 179 VYAKCGLISDASR-------------------------------VFESMPERNEVTWSSM 207
           +YAK GLI DA R                               VFE+M +R+ +TW++M
Sbjct: 193 MYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTM 252

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           V G  QN L  EAL +FRR +  G+  +Q+T  S++ AC  LAA  +GKQ+HA   +T +
Sbjct: 253 VTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLY 312

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             N+F  S+LVDMY+KC  +  A  VF  +  KN++ W  MI G+ ++    E + +F +
Sbjct: 313 DGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSE 372

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQ  G+ PN+ T  SV+S+C+++  +E+G + F  M     + P +   S ++ + G+ G
Sbjct: 373 MQTDGIKPNDFTLGSVISSCANLASLEEG-AQFHCMALVSGLRPYITVSSALVTLYGKCG 431

Query: 388 LIHEAYDLILNMPF 401
            I +A+ L   MPF
Sbjct: 432 SIEDAHRLFDEMPF 445



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 155/327 (47%), Gaps = 42/327 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C    A   GK  HA  I    + +    + L++ YSKC  I  A  VF  M
Sbjct: 283 TFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRM 342

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + I+SW  +I  Y  NG  +EAV +F  M  +G  P ++FT+ SV+ +CA    + E 
Sbjct: 343 TCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKP-NDFTLGSVISSCANLASLEEG 401

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q H  AL + +   + V +AL+ +Y KCG I DA R+F+ MP  ++V+++++V+G+ Q 
Sbjct: 402 AQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQF 461

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E + LF +  + G++ N  T   V+ AC                          + 
Sbjct: 462 GKAKETIDLFEKMLLKGVKPNGVTFIGVLSAC--------------------------SR 495

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVL----WNTMISGFSRHARSVEVMILFEKMQQ 330
           S LV+     GC   +YF  S  ++  +VL    +  MI  +SR  R  E      +M +
Sbjct: 496 SGLVEK----GC---SYF-HSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPR 547

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGK 357
               P+   + ++LSAC   G +E GK
Sbjct: 548 C---PDAIGWATLLSACRLRGDMEIGK 571



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 162/374 (43%), Gaps = 85/374 (22%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           +LR    P   + ++ +L A A    +   ++L      A  D N+F   ALL   A   
Sbjct: 35  VLRTLPHPPPTYVLNHLLTAYARSGRLPLARRL----FDAMPDPNLFTRNALLSALAHAR 90

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNE------------LYEEALILFRRAQVLGL 232
           L+ D  R+F SMP+R+ V++++++AGF                L EEA++   R +    
Sbjct: 91  LLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRP--- 147

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             ++ T+S ++ A + L     G+QVH  + + GFG+  F  S LVDMYAK G + DA  
Sbjct: 148 --SRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKR 205

Query: 293 VFSGIEEKNVVLWNTMISGFSR-----HARSV--------------------------EV 321
           VF  +  KNVV++NTMI+G  R      AR V                          E 
Sbjct: 206 VFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEA 265

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK-------------------SYFDL 362
           + +F +M+  G+  ++ T+ S+L+AC  +   E+GK                   +  D+
Sbjct: 266 LDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDM 325

Query: 363 MVKQHNV-----------LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS---MW 408
             K  ++             N+  ++ MI   G+ G   EA  +   M  D         
Sbjct: 326 YSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTL 385

Query: 409 GSLLASCRNYRNLE 422
           GS+++SC N  +LE
Sbjct: 386 GSVISSCANLASLE 399


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/543 (39%), Positives = 338/543 (62%), Gaps = 18/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D +    +I+ Y + G ++ AR++FDEMP+R ++SW T+I  Y  NG+   A  LF  M 
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP 229

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +     +E + +++L        + E  +L      A   + V    A++  + + G +
Sbjct: 230 EK-----NEVSWTAMLMGYTQGGRIEEASEL----FDAMPVKAVVACNAMILGFGQNGEV 280

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           + A +VF+ + E+++ TWS+M+  + +     EAL LF   Q  G++ N  ++ SV+  C
Sbjct: 281 AKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVC 340

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A LA+L  G+QVHA L K+ F S++F AS L+ MY KCG +V A  +F     K++V+WN
Sbjct: 341 ASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWN 400

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I+G+++H    E + +F +M  +G+  +  T++ VLSACS+ G V++G   F+ M  +
Sbjct: 401 SIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSK 460

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + V P   HY+CM+D+LGRAGL+++A DLI  MP +A A +WG+LL +CR + N+ LAE+
Sbjct: 461 YLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEV 520

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-- 484
           AAK+L  +EP NAG ++LLSNIYA+  RW +VA  R+ +R  +V K    SW+E++ +  
Sbjct: 521 AAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVH 580

Query: 485 -------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                    HP ++ I   LEKL   +++ GY P++   LHDV++  K   L HHSE+LA
Sbjct: 581 MFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLA 640

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+ +  G+PIR+MKNLR+CGDCHS +K  ++I GRE I+RD NRFHHF +G CSC 
Sbjct: 641 VAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCR 700

Query: 598 DFW 600
           D+W
Sbjct: 701 DYW 703



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 170/397 (42%), Gaps = 69/397 (17%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N  I  Y++ G I  AR+VFDEMP + IVSWN+++  Y  N R +EA  LF  M      
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
            +     + ++      R V E ++    A     +RNV   TA++  Y + GL+S+A  
Sbjct: 80  SW-----NGLISGYVKNRMVSEARK----AFDTMPERNVVSWTAMVRGYVQEGLVSEAET 130

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILF----------------------RRAQV 229
           +F  MPE+N V+W+ M+ G +Q    +EA  LF                      R A+ 
Sbjct: 131 LFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEA 190

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVH------------------AVLCKTGFGSNM 271
             L +++    +VI     ++  +Q  QV                   A+L     G  +
Sbjct: 191 REL-FDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRI 249

Query: 272 FAASSLVDM---------------YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
             AS L D                + + G V  A  VF  I EK+   W+ MI  + R  
Sbjct: 250 EEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKG 309

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
             VE + LF  MQ+ G+  N  + ISVLS C+ +  ++ G+     +VK      +VF  
Sbjct: 310 FEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQ-FDSDVFVA 368

Query: 377 SCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLL 412
           S +I +  + G + +A  +     P D    MW S++
Sbjct: 369 SVLITMYVKCGDLVKARQIFDRFSPKDIV--MWNSII 403



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 3/181 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +   +L + L  CA   +   G+  HA+++    ++D   +++LI  Y KCG +  AR++
Sbjct: 328 SNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQI 387

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD    + IV WN+II  Y  +G  +EA+ +F  M   G       T   VL AC+    
Sbjct: 388 FDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMAT-DGVTFVGVLSACSYTGK 446

Query: 151 VFECKQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
           V E  ++      K  ++        ++D+  + GL++DA  + + MP E + + W +++
Sbjct: 447 VKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL 506

Query: 209 A 209
            
Sbjct: 507 G 507



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 18/216 (8%)

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
           C+    S   A +S +  YA+ G +  A  VF  + +K +V WN+M++G+ ++ R  E  
Sbjct: 8   CRRYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREAR 67

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LF+KM +     N  ++  ++S      MV + +  FD M ++     NV  ++ M+  
Sbjct: 68  YLFDKMPER----NTVSWNGLISGYVKNRMVSEARKAFDTMPER-----NVVSWTAMVRG 118

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
             + GL+ EA  L   MP     S W  +L      R ++     A+ LF + P    + 
Sbjct: 119 YVQEGLVSEAETLFWQMPEKNVVS-WTVMLGGLIQVRRID----EARGLFDIMP--VKDV 171

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
           +  +N+ +   +   +A AR+L    E+ +    SW
Sbjct: 172 VARTNMISGYCQEGRLAEARELF--DEMPRRNVISW 205


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 348/556 (62%), Gaps = 10/556 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  H   I +   +D+  S  LI+ YS+   +  A  +F E     +V+WN ++  YT +
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQS 495

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
               + + LF  M ++G+    +FT+++V   C     + + KQ+H +A+K+  D +++V
Sbjct: 496 HDGHKTLKLFALMHKQGERS-DDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
            + +LD+Y KCG +S A   F+S+P  ++V W++M++G ++N   E A  +F + +++G+
Sbjct: 555 SSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGV 614

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             ++FTI+++  A + L AL QG+Q+HA   K    ++ F  +SLVDMYAKCG + DAY 
Sbjct: 615 LPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYC 674

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F  IE  N+  WN M+ G ++H    E + LF++M+  G+ P++ T+I VLSACSH G+
Sbjct: 675 LFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGL 734

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           V +   +   M   + + P + HYSC+ D LGRAGL+ +A +LI +M  +A+ASM+ +LL
Sbjct: 735 VSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLL 794

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
           A+CR   + E  +  A +L  +EP ++  ++LLSN+YAA  +W+E+  AR +++  +VKK
Sbjct: 795 AACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKK 854

Query: 473 EKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           +   SW+E+K K        R++ +   IY K++ ++ ++K+ GY PET+  L DVE+  
Sbjct: 855 DPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEE 914

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K+  L +HSEKLA+ FGL+   P  PIR++KNLR+CGDCH+ MK+ +++  RE ++RD N
Sbjct: 915 KERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDAN 974

Query: 585 RFHHFTNGSCSCWDFW 600
           RFH F +G CSC D+W
Sbjct: 975 RFHRFKDGICSCGDYW 990



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 221/443 (49%), Gaps = 16/443 (3%)

Query: 2   KSLLRYKHKFYYKSFSSSAIASASANANATELSTLQAT----LQSCARERAPVRGKVCHA 57
           K L  Y H   Y     SA+    A+   +++   Q T    L +  +  +   G+  H 
Sbjct: 285 KGLSEYLHSGQY-----SALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHC 339

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
             + +GL+     SN LIN Y K      AR VFD M +R ++SWN++I     NG E E
Sbjct: 340 MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVE 399

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-CKQLHVFALKAAMDRNVFVGTAL 176
           AV LF+ +LR G  P  ++T++SVL A ++  +     KQ+HV A+K     + FV TAL
Sbjct: 400 AVCLFMQLLRCGLKP-DQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTAL 458

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +D Y++   + +A  +FE     + V W++M+AG+ Q+    + L LF      G   + 
Sbjct: 459 IDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDD 517

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           FT+++V   C  L A+ QGKQVHA   K+G+  +++ +S ++DMY KCG +  A F F  
Sbjct: 518 FTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 577

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           I   + V W TMISG   +        +F +M+  G+ P+E T  ++  A S +  +E+G
Sbjct: 578 IPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 637

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
           +      +K  N   + F  + ++D+  + G I +AY L   +      + W ++L    
Sbjct: 638 RQIHANALKL-NCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLA 695

Query: 417 NYRNLELAEIAAKQL--FGMEPD 437
            +   +      KQ+   G++PD
Sbjct: 696 QHGEGKETLQLFKQMKSLGIKPD 718



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA+I+    N +    N LI+ YSKCG ++ AR+VFD+MP R +VSWN+I+ +Y  
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 112 NGR-----EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
           +        Q+A  LF  +LR+     S  T+S +L  C     V+  +  H +A K  +
Sbjct: 118 SSECVVENIQQAFLLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           D + FV  AL+++Y K G + +   +FE MP R+ V W+ M+  +++    EEA+ L   
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 236

Query: 227 AQVLGLEYNQFTI 239
               GL  N+ T+
Sbjct: 237 FHSSGLNPNEITL 249



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 7/192 (3%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           +C    +   +   +R  F+   L+ +Y+KCG ++ A RVF+ MP+R+ V+W+S++A + 
Sbjct: 59  KCTHARILTFEENPER--FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116

Query: 213 QN-----ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           Q+     E  ++A +LFR  +   +  ++ T+S ++  C     +   +  H   CK G 
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             + F A +LV++Y K G V +   +F  +  ++VVLWN M+  +       E + L   
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 236

Query: 328 MQQAGLHPNEQT 339
              +GL+PNE T
Sbjct: 237 FHSSGLNPNEIT 248



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L+ GK  HA +         F  ++L+ MY+KCG +  A  VF  + ++++V WN++++ 
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 312 FSRHARSV-----EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           +++ +  V     +  +LF  ++Q  ++ +  T   +L  C H G V   +S+     K 
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             +  + F    +++I  + G + E   L   MP+     +W  +L
Sbjct: 175 -GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVV-LWNLML 218


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 336/578 (58%), Gaps = 21/578 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S     L+S    RA   G+  HA +I  GL ++      ++N Y KCG + GA++VFD+
Sbjct: 183 SMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQ 242

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  +  V+W  ++  YT  GR ++A+ LF++++ EG   +  F  S VL ACA+  ++  
Sbjct: 243 MAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEG-VEWDSFVFSVVLKACASLEELRF 301

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H    K  ++  V VGT L+D Y KC     A R F+ + E N+V+WS++++G+ Q
Sbjct: 302 GKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQ 361

Query: 214 NELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
              +EEA+  F+  +    +  N FT +S+  AC+ LA    G QVHA   K     + +
Sbjct: 362 MSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQY 421

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             S+L+ MY+KCGC+ DA+ VF  ++  ++V W   ISG + +  + E + LFEKM   G
Sbjct: 422 GESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCG 481

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T+I+VL+ACSH G+VE+GK Y D M++++NV P + HY CMIDI  R+GL+ EA
Sbjct: 482 MKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEA 541

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
              + NMPF+  A  W   L+ C  ++NLEL +IA ++L  ++P++   ++L  N+Y   
Sbjct: 542 LRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLYTWA 601

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            +WEE A   KL+ +  +KKE S SW++ KGK        ++HP+  EIY KL++    M
Sbjct: 602 GKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEKLKEFDGFM 661

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG--VPIRIMKNLRICGD 562
                    E D+     + ++E L+ HSE+LA+ FGL+ +      PI++ KNLR C D
Sbjct: 662 ---------EGDMFQCSMTERREQLLDHSERLAIAFGLISVNGNARAPIKVFKNLRACPD 712

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH F K  S + G E ++RD  RFHHF  G CSC D+W
Sbjct: 713 CHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 205/413 (49%), Gaps = 8/413 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDT-LTSNILINFYSKCGLISGAR 88
           +  L + Q   ++C   R+   G++ H ++  MG+ N + L  N ++  Y +CG +  A 
Sbjct: 78  SVSLYSYQCLFEACRELRSLSHGRLLHNRM-RMGIENPSVLLQNCVLQMYCECGSLEDAD 136

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           K+FDEM     VS  T+I +Y   G   +AV LF  ML  G  P S    +++L +    
Sbjct: 137 KLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSM-YTTLLKSLVNP 195

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           R +   +Q+H   ++A +  N  + T ++++Y KCG +  A RVF+ M  +  V W+ ++
Sbjct: 196 RALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLM 255

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            G+ Q     +AL LF      G+E++ F  S V+ ACA L  L  GKQ+HA + K G  
Sbjct: 256 VGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLE 315

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
             +   + LVD Y KC     A   F  I E N V W+ +ISG+ + ++  E +  F+ +
Sbjct: 316 CEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSL 375

Query: 329 Q-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           + +  +  N  TY S+  ACS +     G       +K+ +++ + +  S +I +  + G
Sbjct: 376 RSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKR-SLIGSQYGESALITMYSKCG 434

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDN 438
            + +A+++  +M  +     W + ++    Y N   A    +++   GM+P++
Sbjct: 435 CLDDAHEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNS 486



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 126/255 (49%), Gaps = 1/255 (0%)

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFAL 162
           N  + S + +G+  EA   F  M + G    S ++   +  AC   R +   + LH    
Sbjct: 50  NLHLVSLSKHGKLNEAFEFFQEMDKAG-VSVSLYSYQCLFEACRELRSLSHGRLLHNRMR 108

Query: 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
               + +V +   +L +Y +CG + DA ++F+ M + N V+ ++M++ + +  L ++A+ 
Sbjct: 109 MGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVG 168

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
           LF R    G +      ++++ +     AL  G+Q+HA + + G  SN    + +V+MY 
Sbjct: 169 LFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYV 228

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           KCG +V A  VF  +  K  V W  ++ G+++  R+ + + LF  +   G+  +   +  
Sbjct: 229 KCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSV 288

Query: 343 VLSACSHIGMVEKGK 357
           VL AC+ +  +  GK
Sbjct: 289 VLKACASLEELRFGK 303


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/570 (39%), Positives = 331/570 (58%), Gaps = 14/570 (2%)

Query: 44  ARERAPVR---GKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           A   AP R   G   H+  I  G L  D   S   ++ Y K G +  AR +F EMP R +
Sbjct: 19  AAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNV 78

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+WN ++ +   +GR  E +  +  +   G  P +  +  +   ACA    +   +Q H 
Sbjct: 79  VAWNAVMTNAVLDGRPLETIEAYFGLREAGGLP-NVVSACAFFNACAGAMYLSLGEQFHG 137

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F +K   + +V V  +++D Y KC     A  VF+ M  RN V+W SMVA + QN   EE
Sbjct: 138 FVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEE 197

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A   +  A+  G E   F +SS +  CAGL  L  G+ +HAV  ++   +N+F AS+LVD
Sbjct: 198 AFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVD 257

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ 338
           MY KCGCV DA  +F    ++N+V WN MI G++    +   +++F+ M ++G   PN  
Sbjct: 258 MYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYI 317

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T ++V+++CS  G+ + G   F+ M ++  + P   HY+C++D+LGRAG+  +AY++I  
Sbjct: 318 TLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQG 377

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP   + S+WG+LL +C+ +   EL  IAA++LF ++P ++GNH+LLSN++A+  RW E 
Sbjct: 378 MPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEA 437

Query: 459 ARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYK 510
              RK +++  +KK+   SWV  K            H    EI + L KL ++M+  GY 
Sbjct: 438 TDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYM 497

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
           P+T++ L+D+E+  K+  +  HSEKLAL FGL+C+ PGVPIRIMKNLRIC DCH   KF 
Sbjct: 498 PDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFI 557

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S I GRE IVRD NRFHHF    CSC D+W
Sbjct: 558 SGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 9/305 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A   +CA       G+  H  ++  G   D    N +++FY KC     AR VFD M  R
Sbjct: 118 AFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVR 177

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
             VSW +++ +Y  NG E+EA A ++   R G+ P ++F VSS L  CA    +   + L
Sbjct: 178 NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEP-TDFMVSSALTTCAGLLGLHLGRAL 236

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A+++ +D N+FV +AL+D+Y KCG + DA ++F   P+RN VTW++M+ G+      
Sbjct: 237 HAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDA 296

Query: 218 EEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLC-KTGFGSNMFAAS 275
           + AL++F      G    N  T+ +VI +C+       G ++   +  + G        +
Sbjct: 297 QNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYA 356

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKM-----Q 329
            +VD+  + G    AY V  G+  + ++ +W  ++     H ++    I  EK+     Q
Sbjct: 357 CVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQ 416

Query: 330 QAGLH 334
            +G H
Sbjct: 417 DSGNH 421



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           + + L +CA       G+  HA  +   ++ +   ++ L++ Y KCG +  A ++F E P
Sbjct: 217 VSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 276

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVF 152
           QR +V+WN +IG Y   G  Q A+ +F +M+R G+T  +  T+ +V+ +C+     +D +
Sbjct: 277 QRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY 336

Query: 153 ECKQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVA 209
           E  +     F ++   +    V    +D+  + G+   A  V + MP R  ++ W +++ 
Sbjct: 337 ELFETMRERFGIEPRTEHYACV----VDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLG 392


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 350/577 (60%), Gaps = 14/577 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + L SCA     + G+  H + I +GL+ D   SN L+  Y++   ++  +KVF  M 
Sbjct: 207 LISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWML 266

Query: 96  QRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           +R  VSWNT+IG+   +G    EA+ +F+ M+R G +P +  T  ++L   ++       
Sbjct: 267 ERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSP-NRVTFINLLATVSSLSTSKLS 325

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQ 213
            Q+H   LK  +  +  +  ALL  Y K G + +   +F  M ER +EV+W+SM++G++ 
Sbjct: 326 HQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIH 385

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           NEL  +A+ L       G   + FT ++V+ ACA +A L  G +VHA   +    S++  
Sbjct: 386 NELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVI 445

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            S+LVDMY+KCG +  A   F+ +  +N+  WN+MISG++RH      + LF +M+ +G 
Sbjct: 446 GSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQ 505

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T++ VLSACSHIG+V++G  YF  M + + ++P V HYSCM+D+LGRAG + +  
Sbjct: 506 LPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIE 565

Query: 394 DLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           + I  MP      +W ++L +C   N R  EL   AA+ LF M+P NA N++LLSN+YA+
Sbjct: 566 NFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYAS 625

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
             +WE++AR R+ +R++ VKKE   SWV +K        G  +HP    IY+KL++L ++
Sbjct: 626 GGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKK 685

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           ++  GY P+ +  L+D+E   K+ELL +HSEKLA+ F ++    G+PIRIMKNLR+CGDC
Sbjct: 686 IRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDC 744

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HS  K+ S++  R  ++RD NRFHHF +G CSC D+W
Sbjct: 745 HSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 192/364 (52%), Gaps = 11/364 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  ++  G ++D    N LIN Y + G    ARK+FDEMP R  V+W  +I  YT NG  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAA----KRDVFECKQLHVFALKAAM-DRNV 170
           ++A  +   M+ EG  P + F   S + AC      +R   + +Q+H +A++  + D  V
Sbjct: 83  EDACGVLKEMIFEGFLP-NRFAFGSAIRACQESMLWRR---KGRQVHGYAIRTGLNDAKV 138

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            VG  L+++YAKCG I  A  VF  M +++ V+W+SM+ G  QN+ +E+A+  +   +  
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT 198

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  + F + S + +CA L  ++ G+Q H    K G   ++  +++L+ +YA+   + + 
Sbjct: 199 GLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAEC 258

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSH 349
             VFS + E++ V WNT+I   +    SV E + +F +M +AG  PN  T+I++L+  S 
Sbjct: 259 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 318

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
           +   +       L++K +NV  +    + ++   G++G +    ++   M        W 
Sbjct: 319 LSTSKLSHQIHALILK-YNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWN 377

Query: 410 SLLA 413
           S+++
Sbjct: 378 SMIS 381



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA       G   HA  I   L +D +  + L++ YSKCG I  A + F+ M
Sbjct: 410 TFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLM 469

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           P R + SWN++I  Y  +G    A+ LF  M   G+ P    T   VL AC+
Sbjct: 470 PVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLP-DHITFVGVLSACS 520


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 353/602 (58%), Gaps = 42/602 (6%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C + +AP+  K  HA+I+  GLN      N L++ Y KC L+  A  +FDEMPQR  
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW +I+ +Y       + +++F  M    +     F  +++L ACA+   +   KQ+H 
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128

Query: 160 -FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F L   +D +V V ++L+D+YAKCGL S A  VF+S+  +  V+W++M++G+ ++ L +
Sbjct: 129 RFVLSPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKD 187

Query: 219 EALILFRRAQVLGLE--------------------------------YNQFTISSVICAC 246
           EA+ LF R  V  L                                  +   +SSV+ AC
Sbjct: 188 EAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGAC 247

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A LA L  GKQ+H ++  +G+ S +F +++LVDMYAKC  ++ A  VF+ +  ++VV W 
Sbjct: 248 ANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWT 307

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I G ++H R+ E + L+++M  A + PNE T++ ++ ACSH G+V KG+  F  M++ 
Sbjct: 308 SIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIED 367

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P++  ++C +D+L R+G ++EA DLI  MP       W +LL++C+++ N E+   
Sbjct: 368 YRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVR 427

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI----- 481
            A +L  +       ++LLSN+YA   +WE+++R RKL+ D EVK++   S +++     
Sbjct: 428 IADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQ 487

Query: 482 ---KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G+  HP   EI+  L++L  EM+K GY P+T + LHD+E+  K+  L  HSE+ A+
Sbjct: 488 VFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAV 547

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            +GL+   PG  IRI+KNLRICGDCH+F+K  S I  +E IVRD  R+HHF +G CSC D
Sbjct: 548 AYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCND 607

Query: 599 FW 600
           FW
Sbjct: 608 FW 609



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 95/178 (53%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + + +CA       GK  H  +IG G  +    SN L++ Y+KC  I  AR VF+ M
Sbjct: 239 VLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRM 298

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSW +II     +GR +EA+ L+  M+     P +E T   ++ AC+    V + 
Sbjct: 299 LHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKP-NEVTFVGLIYACSHAGLVSKG 357

Query: 155 KQLHVFALKA-AMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
           ++L    ++   +  ++ + T  LD+ ++ G +++A  + ++MP + +E TW+++++ 
Sbjct: 358 RKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSA 415


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/577 (38%), Positives = 337/577 (58%), Gaps = 44/577 (7%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D L+   +I  Y + G +  AR+  D M ++ +V+WN +I  Y  +G   EA+ +F  M 
Sbjct: 224 DELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMY 283

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA----AMDRNVFVGTALLDVYAK 182
             G   + EFT +SVL ACA        KQ+H + L+     ++D ++ V  AL  +Y K
Sbjct: 284 LLG-IQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWK 342

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFV------------------------------ 212
           CG + +A +VF  MP ++ V+W+++++G+V                              
Sbjct: 343 CGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGL 402

Query: 213 -QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            QN   EE+L LF R +  G E   +  +  I ACA LAAL+ G+Q+HA L + GF S++
Sbjct: 403 AQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSL 462

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            A ++L+ MYAKCG V  A+ +F  +   + V WN MI+   +H    + + LFE M + 
Sbjct: 463 SAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKE 522

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            + P+  T+++VLS CSH G+VE+G  YF  M   + + P   HY+ MID+L RAG   E
Sbjct: 523 DILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSE 582

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A D+I  MP +    +W +LLA CR + N++L   AA++LF + P + G ++LLSN+YA 
Sbjct: 583 AKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYAT 642

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEE 503
             RW++VA+ RKL+RD  VKKE   SW+E++ K +        HP +  +Y+ LE+L  +
Sbjct: 643 VGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLK 702

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M+KLGY P+T+  LHD+E  +K+ +L  HSEKLA+ FGL+ L  G  +R+ KNLRICGDC
Sbjct: 703 MRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDC 762

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+  KF S++  RE +VRD  RFHHF NG CSC ++W
Sbjct: 763 HNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 207/446 (46%), Gaps = 85/446 (19%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFIN 124
           D +    LI  +S  G  + AR++F   P   R  V +N +I  Y+ N     A+ LF +
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 125 MLREGKTPYSEFTVSSVLCACA-AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           +LR G  P   FT +SVL A A    D  +C+Q+H   +K+       V  ALL V+ KC
Sbjct: 140 LLRNGFRP-DNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKC 198

Query: 184 G---------LISDASRVFESMPERNEVTWSSMVAGFVQN-------------------- 214
                     L++ A ++F+ M ER+E++W++M+AG+V+N                    
Sbjct: 199 ASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVA 258

Query: 215 -----------ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
                        + EAL +FR+  +LG+++++FT +SV+ ACA     + GKQVHA + 
Sbjct: 259 WNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYIL 318

Query: 264 KT----GFGSNMFAASSLVDMYAKCGCVVDAYFVF---------------SG-------- 296
           +T        ++   ++L  +Y KCG V +A  VF               SG        
Sbjct: 319 RTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRID 378

Query: 297 --------IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
                   + E+N++ W  MISG +++    E + LF +M+  G  P +  +   + AC+
Sbjct: 379 EAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACA 438

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
            +  +  G+     +V+      ++   + +I +  + G++  A+ L L MP+  + S W
Sbjct: 439 WLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVS-W 496

Query: 409 GSLLASCRNY----RNLELAEIAAKQ 430
            +++A+   +    + LEL E+  K+
Sbjct: 497 NAMIAALGQHGHGAQALELFELMLKE 522



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 158/359 (44%), Gaps = 49/359 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGM----GLNNDTLTSNILINFYSKCGLISGARKV 90
           T  + L +CA     + GK  HA I+       L+     +N L   Y KCG +  AR+V
Sbjct: 293 TYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQV 352

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGR-------------------------------EQEAV 119
           F++MP + +VSWN I+  Y   GR                                +E++
Sbjct: 353 FNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESL 412

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            LF  M  EG  P  ++  +  + ACA    +   +QLH   ++   D ++  G AL+ +
Sbjct: 413 KLFNRMKSEGFEP-CDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITM 471

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YAKCG++  A  +F +MP  + V+W++M+A   Q+    +AL LF       +  ++ T 
Sbjct: 472 YAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITF 531

Query: 240 SSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
            +V+  C+    + +G +    +    G        + ++D+  + G   +A  +   + 
Sbjct: 532 LTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMP 591

Query: 299 -EKNVVLWNTMISGFSRHARSVEVMI-----LFEKMQQAGLHPNEQTYISVLSACSHIG 351
            E    +W  +++G   H  ++++ I     LFE M Q     ++ TY+ + +  + +G
Sbjct: 592 VEPGPPIWEALLAGCRIHG-NMDLGIQAAERLFELMPQ-----HDGTYVLLSNMYATVG 644


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/559 (39%), Positives = 327/559 (58%), Gaps = 11/559 (1%)

Query: 52  GKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G   HA  +  G L +D   S   ++ Y K G ++ AR++FDEMP R +V+WN ++ +  
Sbjct: 139 GTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAV 198

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +GR  E V  +  +   G  P +  +V +   ACA   ++   +Q + F  K    ++V
Sbjct: 199 LDGRPLETVEAYFGLRGAGGMP-NVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDV 257

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V  +++D Y KC  +  A  VF+ M  RN V+W SMV  + QN   EEA  ++  A+  
Sbjct: 258 SVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRA 317

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G E   F +SSV+  CAGL  L  G+ +HAV  ++   SN+F AS+LVDMY KCG + DA
Sbjct: 318 GEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDA 377

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSH 349
             VF  + ++N+V WN MI G++    +   + +F+KM       PN  T ++VL+ACS 
Sbjct: 378 EQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSR 437

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+ ++G   F  M  +  + P + HY+C++D+L RAG+   AY +I  MP   + S+WG
Sbjct: 438 GGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWG 497

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL  C+ +   EL  IAA++LF ++P ++GNH+LLSN+ A+  RW E    RK +++  
Sbjct: 498 ALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVG 557

Query: 470 VKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           +KK+  +SW+  K            H    EI + L KL  +M+  GY P+T++ L+D+E
Sbjct: 558 IKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLE 617

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K+  +  HSEKLAL FGL+C+ PG+PIRIMKNLRIC DCH   KF S IAGRE IVR
Sbjct: 618 EEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVR 677

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D N FHHF N  CSC D+W
Sbjct: 678 DNNMFHHFKNYECSCKDYW 696



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 204/430 (47%), Gaps = 13/430 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI---LINFYSKCGLISGA 87
           T+   L   +++    R+   G+  HA+   + L +  L   +   L+N YSK  L   A
Sbjct: 15  TDAQLLAGAVEAAIATRSARLGRAAHAR--ALRLLSPALPPFLCAHLVNLYSKLDLPGAA 72

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-CACA 146
                  P   +VS+   I     + R  +A++ F  MLR G  P ++FT  S    A +
Sbjct: 73  AASLAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRP-NDFTFPSAFKAAAS 131

Query: 147 AKRDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           A        QLH  AL+   +  + FV  A LD+Y K G ++ A R+F+ MP RN V W+
Sbjct: 132 APPRSAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWN 191

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +++   V +    E +  +   +  G   N  ++ +   ACAG+  L  G+Q +  + K 
Sbjct: 192 AVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKC 251

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           GFG ++  ++S+VD Y KC CV  A  VF G+  +N V W +M+  ++++    E   ++
Sbjct: 252 GFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVY 311

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
              ++AG  P +    SVL+ C+ +  ++ G++   + V+   +  N+F  S ++D+ G+
Sbjct: 312 LGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRS-CIDSNIFVASALVDMYGK 370

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA-EIAAKQLFGMEPDNAGNHLL 444
            G I +A  +   MP       W +++    +  +   A  +  K + G E   A N++ 
Sbjct: 371 CGGIEDAEQVFFEMP-QRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQE--TAPNYIT 427

Query: 445 LSNIYAANRR 454
           L N+  A  R
Sbjct: 428 LVNVLTACSR 437



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 2/177 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           + + L +CA       G+  HA  +   ++++   ++ L++ Y KCG I  A +VF EMP
Sbjct: 326 VSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMP 385

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           QR +V+WN +IG Y   G    A+++F  M+   +T  +  T+ +VL AC+      E  
Sbjct: 386 QRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGY 445

Query: 156 QL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVAG 210
           +L      +  ++  +     ++D+  + G+   A ++ + MP R  ++ W +++ G
Sbjct: 446 ELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGG 502


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 347/557 (62%), Gaps = 10/557 (1%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
            A + +CA+ +     +  HA +       D    N LI+ Y KCG +  A KVFD+M  
Sbjct: 55  HAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRN 114

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           + +VSW ++I  Y  N    EA+ L   ML+ G+   + FT +S+L A  A  D     Q
Sbjct: 115 KDMVSWTSLIAGYAQNDMPAEAIGLLPGMLK-GRFKPNGFTFASLLKAVGAYADSGIGGQ 173

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H  A+K     +V+VG+ALLD+YA+CG +  A+ VF+ +  +N V+W+++++GF +   
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            E AL++F   Q  G E   FT SS+  A AG+ AL QGK VHA + K+      F  ++
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNT 293

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           ++DMYAK G ++DA  VF  +  K++V WN+M++ F+++    E +  FE+M+++G++ N
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + +++ +L+ACSH G+V++GK YFD M+K++N+ P + HY  ++D+LGRAGL++ A   I
Sbjct: 354 QISFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFI 412

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
             MP + TA++WG+LLA+CR ++N ++ + AA  +F ++PD++G  +LL NIYA+   W+
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWD 472

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLG 508
             AR RK+++ + VKKE + SWVEI+            HPR  EIY   +++  +++K G
Sbjct: 473 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEG 532

Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
           Y P+ ++ L  V++  ++  L +HSEK+AL F L+ +  G  IRIMKN+RICGDCHS  K
Sbjct: 533 YVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFK 592

Query: 569 FASRIAGRETIVRDLNR 585
           + S++  RE ++  L++
Sbjct: 593 YISKVFEREIVIIHLHK 609


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/543 (40%), Positives = 335/543 (61%), Gaps = 17/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N L++ +   G   GAR++F  MP R +VSWNT++   + +G  +EA A+F+ M 
Sbjct: 128 DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++   VS   C+    RD+   ++   +   A    +  + TA++  Y   G +
Sbjct: 188 VRNSVSWNAM-VSGFACS----RDMSAAEE---WFRNAPEKGDAVLWTAMVSGYMDIGNV 239

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICA 245
             A   FE+MP RN V+W+++VAG+V+N   ++AL LFR   +   ++ N  T+SSV+  
Sbjct: 240 VKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 299

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L+AL  GKQ+H    K     N+   +SLV MY KCG +  A  +F  +  ++VV W
Sbjct: 300 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 359

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N MISG+++H    E + LFE+M+  G+ PN  T+++VL+AC H G+ + G   F+ M +
Sbjct: 360 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 419

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + + P V HYSCM+D+L RAG +  A DLI +MPF+   S +G+LLA+CR Y+NLE AE
Sbjct: 420 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAE 479

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG-- 483
           +AA +L   +P +AG ++ L+NIYA   +W++V+R R+ ++D+ V K    SW+EIKG  
Sbjct: 480 LAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVM 539

Query: 484 ------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                  R HP++  I+ KL +L E MK +GY P+ +  LHDV+++ K ++L+ HSEKLA
Sbjct: 540 HEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLA 599

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           ++FGL+   PG+ +RI KNLR+CGDCH+  K  S+I  RE I+RD  RFHHF  G CSC 
Sbjct: 600 ISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCG 659

Query: 598 DFW 600
           D+W
Sbjct: 660 DYW 662



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 15/183 (8%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           +  A+   NA   STL + L  C+   A   GK  H   + + L+ +      L++ Y K
Sbjct: 281 VREANVQPNA---STLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCK 337

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG +S A K+F EM  R +V+WN +I  Y  +G  +EA+ LF  M  EG  P +  T  +
Sbjct: 338 CGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEP-NWITFVA 396

Query: 141 VLCACAAKR------DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
           VL AC            FE  Q  ++ ++  +D      + ++D+  + G +  A  +  
Sbjct: 397 VLTACIHTGLCDFGIRCFEGMQ-ELYGIEPRVDHY----SCMVDLLCRAGKLERAVDLIR 451

Query: 195 SMP 197
           SMP
Sbjct: 452 SMP 454


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 339/579 (58%), Gaps = 31/579 (5%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            +L+T+ + L  CA       GK  H+  I          SN L++ YSKCG + GA +V
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F++M +R +VSW ++I  YT +G    A+ L   M +EG        ++S+L ACA    
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG-VKLDVVAITSILHACARSGS 367

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K +H +     M  N+FV  AL+D+YAKCG +  A+ VF +M  ++ ++W++MV  
Sbjct: 368 LDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE 427

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
                                L+ +  T++ ++ ACA L+AL +GK++H  + + G+ S+
Sbjct: 428 ---------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSD 466

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
              A++LVD+Y KCG +  A  +F  I  K++V W  MI+G+  H    E +  F +M+ 
Sbjct: 467 RHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRD 526

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ P+E ++IS+L ACSH G++E+G  +F +M    N+ P + HY+CM+D+L R G + 
Sbjct: 527 AGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLS 586

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +AY  I  +P    A++WG+LL  CR Y ++ELAE  A+++F +EP+N G ++LL+NIYA
Sbjct: 587 KAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYA 646

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN---------HPRIAEIYSKLEKLV 501
              + EEV R R+ I    ++K    SW+EIKG+ N         HP   +I S L+K+ 
Sbjct: 647 EAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMR 706

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            +MK+ GY P+T++ L + ++ +K+  L  HSEKLA+ FGL+ L P   IR+ KNLR+CG
Sbjct: 707 RKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCG 766

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH   KF S+   RE ++RD NRFHHF +G CSC  FW
Sbjct: 767 DCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 214/473 (45%), Gaps = 82/473 (17%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E  T  + LQ CA  ++   GK  H+ I    +  D      L++FY+ CG +   R+VF
Sbjct: 98  ETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157

Query: 92  DEMPQ---------------------------------------------------RCIV 100
           D M +                                                   R ++
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVI 217

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SWN++I  Y +NG  +  + ++  M+  G       T+ SVL  CA    +   K +H  
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           A+K++ +R +     LLD+Y+KCG +  A RVFE M ERN V+W+SM+AG+ ++   + A
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 336

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           +IL ++ +  G++ +   I+S++ ACA   +L  GK VH  +      SN+F  ++L+DM
Sbjct: 337 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDM 396

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           YAKCG +  A  VFS +  K+++ WNTM+                       L P+ +T 
Sbjct: 397 YAKCGSMEGANSVFSTMVVKDIISWNTMV---------------------GELKPDSRTM 435

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEAYDLILNM 399
             +L AC+ +  +E+GK     +++  N   +  H +  ++D+  + G++  A  L   +
Sbjct: 436 ACILPACASLSALERGKEIHGYILR--NGYSSDRHVANALVDLYVKCGVLGLARLLFDMI 493

Query: 400 PFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           P     S W  ++A      Y N  +A     +  G+EPD       +S +YA
Sbjct: 494 PSKDLVS-WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS---FISILYA 542



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 174/369 (47%), Gaps = 54/369 (14%)

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T  SVL  CA  + + + K++H      ++  +  +G  L+  YA CG + +  RVF++M
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 197 ----------------------------------------PE-----------RNEVTWS 205
                                                   PE           R+ ++W+
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           SM++G+V N L E  L ++++   LG++ +  TI SV+  CA    L  GK VH++  K+
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
            F   +  +++L+DMY+KCG +  A  VF  + E+NVV W +MI+G++R   S   +IL 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           ++M++ G+  +     S+L AC+  G ++ GK   D  +K +N+  N+F  + ++D+  +
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY-IKANNMASNLFVCNALMDMYAK 399

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCR-NYRNLELAEIAAKQLFGMEPDNAGNHLL 444
            G +  A  +   M      S W +++   + + R +     A   L  +E     +  +
Sbjct: 400 CGSMEGANSVFSTMVVKDIIS-WNTMVGELKPDSRTMACILPACASLSALERGKEIHGYI 458

Query: 445 LSNIYAANR 453
           L N Y+++R
Sbjct: 459 LRNGYSSDR 467



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 23/196 (11%)

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           E    T  SV+  CAGL +L  GK+VH+++     G +      LV  YA CG + +   
Sbjct: 96  ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  +E+KNV LWN M+S +++     E + LF+ M + G+                   
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRP-------------- 201

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA---YDLILNMPFDATASMWG 409
            E     FD +  +     +V  ++ MI      GL       Y  ++ +  D   +   
Sbjct: 202 -ESASELFDKLCDR-----DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255

Query: 410 SLLASCRNYRNLELAE 425
           S+L  C N   L L +
Sbjct: 256 SVLVGCANSGTLSLGK 271


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/624 (37%), Positives = 363/624 (58%), Gaps = 50/624 (8%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           +A   A  NA     L A ++ CA       GK  H  ++  G++ D +  N +++ Y+K
Sbjct: 103 LAEGEATPNAF---VLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAK 159

Query: 81  CGLISGARKVF-------------------------------DEMPQRCIVSWNTIIGSY 109
           CG    AR+VF                               DE P R   SWNTII   
Sbjct: 160 CGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGL 219

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSS--VLCACAAKRDVFECKQLHVFALKAAMD 167
             +G   +A++    M + G   ++ +T S+  VL       D+   +QLH   L AA++
Sbjct: 220 MRSGHAADALSHLRRMAQAG-VVFNHYTYSTAFVLAGMLLLPDL--GRQLHGRVLIAALE 276

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFE---SMPERNEVTWSSMVAGFVQNELYEEALILF 224
            + FV ++L+D+Y KCGL+  A+ VF+    +       WS+MVAG+VQN   EEAL LF
Sbjct: 277 GDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLF 336

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           RR    G+  ++FT++SV  ACA +  + QG+QVH  + K  +  +   AS++VDMYAKC
Sbjct: 337 RRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKC 396

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           G + DA  +F     KN+ +W +M+  ++ H +    + LFE+M    + PNE T + VL
Sbjct: 397 GNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVL 456

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           SACSH+G+V +G+ YF  M +++ ++P++ HY+C++D+ GR+GL+ +A + I     +  
Sbjct: 457 SACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHE 516

Query: 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
           A +W +LL++CR +++ E A++A+++L  +E  +AG++++LSNIYA N +W +    R  
Sbjct: 517 AIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVS 576

Query: 465 IRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHD 516
           +++ +V+K+  +SW+ +K        G  +HP+ AEIY+ LEKLVE +K++GY   T+  
Sbjct: 577 MQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLV 636

Query: 517 LHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGR 576
           +HDVED +++  L  HSEKLA+ FG++    G P+RI KNLR+C DCH  +K+ S   GR
Sbjct: 637 VHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGR 696

Query: 577 ETIVRDLNRFHHFTNGSCSCWDFW 600
           E +VRDL RFHHF + SCSC DFW
Sbjct: 697 EIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 175/375 (46%), Gaps = 36/375 (9%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           ++ F+ +      AR VFDE P R    W   I      GR  + +  F  ML EG+   
Sbjct: 51  VLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATP 110

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           + F +++V+  CA   DV   K++H + L+  +  +V +  A+LD+YAKCG    A RVF
Sbjct: 111 NAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVF 170

Query: 194 ESMPERNEVTWSSMVAGFVQN-------ELYEE------------------------ALI 222
            +M ER+ V+W+  +   +Q+       +L++E                        AL 
Sbjct: 171 GAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALS 230

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
             RR    G+ +N +T S+       L     G+Q+H  +       + F  SSL+DMY 
Sbjct: 231 HLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYC 290

Query: 283 KCGCVVDAYFVF---SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           KCG +  A  VF   S +       W+TM++G+ ++ R  E + LF +M + G+  +  T
Sbjct: 291 KCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFT 350

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
             SV +AC+++GMVE+G+     + K    L      S ++D+  + G + +A   I + 
Sbjct: 351 LTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPL-ASAIVDMYAKCGNLEDARS-IFDR 408

Query: 400 PFDATASMWGSLLAS 414
                 ++W S+L S
Sbjct: 409 ACTKNIAVWTSMLCS 423


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/667 (34%), Positives = 349/667 (52%), Gaps = 102/667 (15%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE- 93
           T    +Q+CA       GK  H  ++ +G ++D    N LIN Y+ CG +  ARK+FDE 
Sbjct: 143 TYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDES 202

Query: 94  ------------------------------MPQRCIV----------------------- 100
                                         MPQR IV                       
Sbjct: 203 PVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFN 262

Query: 101 --------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
                   SW+ +I  Y  NG  +EA+ +FI M   G     E  V SVL ACA    V 
Sbjct: 263 EMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMR-LDEVVVVSVLSACAHLSIVK 321

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYA------------------------------- 181
             K +H   ++  ++  V +  AL+ +Y+                               
Sbjct: 322 TGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCM 381

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KCG +  A  +F+ MPE++ V+WS++++G+ Q++ + E L LF   Q+  +  ++  + S
Sbjct: 382 KCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           VI AC  LAAL QGK VHA + K G   N+   ++L+DMY KCGCV +A  VF+G+EEK 
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG 501

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           V  WN +I G + +      + +F +M+  G+ PNE T++ VL AC H+G+V++G+ +F 
Sbjct: 502 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA 561

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M+++H + PNV HY CM+D+LGRAGL++EA  LI +MP     + WG+LL +C+ + + 
Sbjct: 562 SMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 621

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE- 480
           E+ E   ++L  ++PD+ G H+LLSNI+A+   WE+V   R +++   V K    S +E 
Sbjct: 622 EMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEA 681

Query: 481 -------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                  + G + HP I ++   L ++ + +K  GY P+T     D+++  K+  L  HS
Sbjct: 682 NGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHS 741

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+ + P  PIRIMKNLRIC DCH+  K  S+   RE +VRD +RFH+F  G+
Sbjct: 742 EKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGA 801

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 802 CSCMDYW 808



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 199/407 (48%), Gaps = 51/407 (12%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI--SGARKV 90
           LS L+  L +C   +   R     +++I  G  +DT  ++ L+ F +    I    + ++
Sbjct: 41  LSILETHLHNCHNLKQFNR---ILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQI 97

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD +       WNT++ +Y  +   ++A+ L+  M++    P   +T   V+ ACA +  
Sbjct: 98  FDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGP-DNYTYPLVVQACAVRLL 156

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            F  K++H   LK   D +V+V   L+++YA CG + DA ++F+  P  + V+W+S++AG
Sbjct: 157 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 216

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V+    EEA ++F +                                           N
Sbjct: 217 YVKKGDVEEAKLIFDQMP---------------------------------------QRN 237

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           + A++S++ +  K G V++A+ +F+ ++EK++V W+ +ISG+ ++    E +++F +M  
Sbjct: 238 IVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA 297

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+  +E   +SVLSAC+H+ +V+ GK    L+++   +   V   + +I +   +G I 
Sbjct: 298 NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRM-GIESYVNLQNALIHMYSGSGEIM 356

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
           +A  L  N   +     W S+++ C    ++E     A+ LF + P+
Sbjct: 357 DAQKL-FNGSHNLDQISWNSMISGCMKCGSVE----KARALFDVMPE 398



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 148/327 (45%), Gaps = 36/327 (11%)

Query: 27  NANATELS--TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS----- 79
           NAN   L    + + L +CA       GK+ H  +I MG+ +     N LI+ YS     
Sbjct: 296 NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEI 355

Query: 80  --------------------------KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
                                     KCG +  AR +FD MP++ IVSW+ +I  Y  + 
Sbjct: 356 MDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHD 415

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
              E +ALF  M + G+    E  + SV+ AC     + + K +H +  K  +  NV +G
Sbjct: 416 CFSETLALFHEM-QLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILG 474

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           T LLD+Y KCG + +A  VF  M E+   +W++++ G   N L E +L +F   +  G+ 
Sbjct: 475 TTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVI 534

Query: 234 YNQFTISSVICACAGLAALIQGK-QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
            N+ T   V+ AC  +  + +G+    +++ K G   N+     +VD+  + G + +A  
Sbjct: 535 PNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEK 594

Query: 293 VFSGIE-EKNVVLWNTMISGFSRHARS 318
           +   +    +V  W  ++    +H  +
Sbjct: 595 LIESMPMAPDVATWGALLGACKKHGDT 621


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/543 (40%), Positives = 335/543 (61%), Gaps = 17/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N L++ +   G   GAR++F  MP R +VSWNT++   + +G  +EA A+F+ M 
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++   VS   C+    RD+   ++   +   A    +  + TA++  Y   G +
Sbjct: 139 VRNSVSWNAM-VSGFACS----RDMSAAEE---WFRNAPEKGDAVLWTAMVSGYMDIGNV 190

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICA 245
             A   FE+MP RN V+W+++VAG+V+N   ++AL LFR   +   ++ N  T+SSV+  
Sbjct: 191 VKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 250

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L+AL  GKQ+H    K     N+   +SLV MY KCG +  A  +F  +  ++VV W
Sbjct: 251 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 310

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N MISG+++H    E + LFE+M+  G+ PN  T+++VL+AC H G+ + G   F+ M +
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 370

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + + P V HYSCM+D+L RAG +  A DLI +MPF+   S +G+LLA+CR Y+NLE AE
Sbjct: 371 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAE 430

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG-- 483
           +AA +L   +P +AG ++ L+NIYA   +W++V+R R+ ++D+ V K    SW+EIKG  
Sbjct: 431 LAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVM 490

Query: 484 ------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                  R HP++  I+ KL +L E MK +GY P+ +  LHDV+++ K ++L+ HSEKLA
Sbjct: 491 HEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLA 550

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           ++FGL+   PG+ +RI KNLR+CGDCH+  K  S+I  RE I+RD  RFHHF  G CSC 
Sbjct: 551 ISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCG 610

Query: 598 DFW 600
           D+W
Sbjct: 611 DYW 613



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL + L  C+   A   GK  H   + + L+ +      L++ Y KCG +S A K+F E
Sbjct: 242 STLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGE 301

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR---- 149
           M  R +V+WN +I  Y  +G  +EA+ LF  M  EG  P +  T  +VL AC        
Sbjct: 302 MHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEP-NWITFVAVLTACIHTGLCDF 360

Query: 150 --DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
               FE  Q  ++ ++  +D      + ++D+  + G +  A  +  SMP
Sbjct: 361 GIRCFEGMQ-ELYGIEPRVDHY----SCMVDLLCRAGKLERAVDLIRSMP 405


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 351/603 (58%), Gaps = 42/603 (6%)

Query: 35  TLQATLQSCAR-ERAPVRGKVCHAKIIGMGLNND----TLTSNILINFYSKCGLISGARK 89
           T+ + L +C+  ER  V GK  HA ++    NND    +   + L++ Y  C  +   R+
Sbjct: 299 TIASVLPACSHLERLDV-GKEIHAYVL---RNNDLIENSFVGSALVDMYCNCRQVESGRR 354

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD +  R I  WN +I  Y  NG +++A+ LFI M++      +  T++SV+ AC    
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
                + +H +A+K     + +V  AL+D+Y++ G +  +  +F+SM  R+ V+W++M+ 
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 210 GFVQNELYEEALILFRRAQVL---------------GLEY--NQFTISSVICACAGLAAL 252
           G+V +  Y  AL+L    Q +               G  Y  N  T+ +V+  CA LAA+
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            +GK++HA   +    S++   S+LVDMYAKCGC+  +  VF+ +  KNV+ WN +I   
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 313 SRHARSVEVMILFEKM-QQAG----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
             H +  E + LF+ M  +AG      PNE T+I+V +ACSH G++ +G + F  M   H
Sbjct: 595 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH 654

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP--FDATASMWGSLLASCRNYRNLELAE 425
            V P   HY+C++D+LGRAG + EAY+L+  MP  FD   + W SLL +CR ++N+EL E
Sbjct: 655 GVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA-WSSLLGACRIHQNVELGE 713

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--- 482
           +AAK L  +EP+ A +++LLSNIY++   W +    RK +R   VKKE   SW+E +   
Sbjct: 714 VAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEV 773

Query: 483 -----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                G  +HP+  +++  LE L E+M+K GY P+T   LH+V++  K+ LL  HSEKLA
Sbjct: 774 HKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLA 833

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FG++   PG  IR+ KNLR+C DCH+  KF S+I  RE IVRD+ RFHHF  G+CSC 
Sbjct: 834 IAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCG 893

Query: 598 DFW 600
           D+W
Sbjct: 894 DYW 896



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 169/304 (55%), Gaps = 8/304 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+  HA  +  G  + ++T +N L+N Y KCG I    KVFD +  R  VSWN+ I +  
Sbjct: 111 GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALC 170

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVFECKQLHVFALKAAMD 167
              + ++A+  F  M  E     S FT+ SV  AC+       +   KQLH ++L+   D
Sbjct: 171 RFEKWEQALEAFRAMQME-NMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-D 228

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +  F   AL+ +YAK G + D+  +FES  +R+ V+W++M++ F Q++ + EAL  FR  
Sbjct: 229 QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLM 288

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSNMFAASSLVDMYAKCGC 286
            + G+E +  TI+SV+ AC+ L  L  GK++HA VL       N F  S+LVDMY  C  
Sbjct: 289 VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ 348

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF-EKMQQAGLHPNEQTYISVLS 345
           V     VF  I  + + LWN MISG++R+    + +ILF E ++ AGL PN  T  SV+ 
Sbjct: 349 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 408

Query: 346 ACSH 349
           AC H
Sbjct: 409 ACVH 412



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R   SW   + S T +   +EA++ +I M   G  P   F   +VL A +  +D+   
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARP-DNFAFPAVLKAVSGLQDLKTG 111

Query: 155 KQLHVFALKAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           +Q+H  A+K      +V V   L+++Y KCG I D  +VF+ + +R++V+W+S +A   +
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA---ALIQGKQVHAVLCKTGFGSN 270
            E +E+AL  FR  Q+  +E + FT+ SV  AC+ L     L  GKQ+H    + G    
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQK 230

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            F  ++L+ MYAK G V D+  +F    ++++V WNTMIS FS+  R  E +  F  M  
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            G+  +  T  SVL ACSH+  ++ GK     +++ ++++ N F  S ++D+
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDM 342



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 172/398 (43%), Gaps = 77/398 (19%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ + + +C    A    +  H   + +G   D    N L++ YS+ G +  +  +FD 
Sbjct: 401 TTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDS 460

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT--------------PY--SEFT 137
           M  R  VSWNT+I  Y  +GR   A+ L   M R   T              PY  +  T
Sbjct: 461 MEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAIT 520

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           + +VL  CAA   + + K++H +A++  +  ++ VG+AL+D+YAKCG ++ + RVF  MP
Sbjct: 521 LMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP 580

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-----LEYNQFTISSVICACA----- 247
            +N +TW+ ++     +   EEAL LF+            + N+ T  +V  AC+     
Sbjct: 581 NKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLI 640

Query: 248 --GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
             GL    + K  H V                 D YA   CVVD     +G  E+   L 
Sbjct: 641 SEGLNLFYRMKHDHGV-------------EPTSDHYA---CVVD-LLGRAGQLEEAYELV 683

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NTM + F +                         + S+L AC     VE G+      V 
Sbjct: 684 NTMPAEFDKVG----------------------AWSSLLGACRIHQNVELGE------VA 715

Query: 366 QHNVL---PNVF-HYSCMIDILGRAGLIHEAYDLILNM 399
             N+L   PNV  HY  + +I   AGL ++A ++  NM
Sbjct: 716 AKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 753


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 351/610 (57%), Gaps = 40/610 (6%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  +    L++ +R ++ V G   H     +G ++D      L+  Y+ CG I+ AR 
Sbjct: 119 AVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARL 178

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FD+M  R +V+W+ +I  Y  +G   +A+ LF  M      P  E  +S+VL AC    
Sbjct: 179 MFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEP-DEMMLSTVLSACGRAG 237

Query: 150 DVFECKQLHVFALK--------------------AAMD-----------RNVFVGTALLD 178
           ++   K +H F ++                     +MD           +N+   TA++ 
Sbjct: 238 NLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVT 297

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
            Y+K G I +A  VF  M +++ V WS+M++G+ +++  +EAL LF   Q LG++ +Q T
Sbjct: 298 GYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVT 357

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + SVI ACA L AL Q K +H  + K GFG  +   ++L++MYAKCG +  A  +F  + 
Sbjct: 358 MLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMP 417

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            KNV+ W  MIS F+ H  +   +  F +M+   + PN  T++ VL ACSH G+VE+G+ 
Sbjct: 418 RKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRK 477

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            F  M+ +HN+ P   HY CM+D+ GRA L+ EA +L+  MP      +WGSL+A+CR +
Sbjct: 478 IFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVH 537

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
             +EL E AAK+L  ++PD+ G H+ LSNIYA  RRWE+V + RKL++   + KE+  S 
Sbjct: 538 GEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSR 597

Query: 479 VEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
            E+  +        R+H    EIY KL ++V ++K +GY P T   L D+E+  K+E+++
Sbjct: 598 FELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVL 657

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
            HSEKLAL +GLM    G  IRI+KNLR+C DCH+F+K AS++  RE +VRD  RFHH+ 
Sbjct: 658 WHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYK 717

Query: 591 NGSCSCWDFW 600
           +G CSC D+W
Sbjct: 718 DGVCSCKDYW 727



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 181/382 (47%), Gaps = 38/382 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSY 109
           K  HA+I+   L  D  TS ++    S C L S    A  VF+ +P+      N  +   
Sbjct: 40  KQVHAQILRSKL--DRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLREL 97

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           + +  E E   L    +R        F+   +L A +  + + E  ++H  A K   D +
Sbjct: 98  SRS-EEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSD 156

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            FV T L+ +YA CG I++A  +F+ M  R+ VTWS M+ G+ Q+ L+ +AL+LF   + 
Sbjct: 157 PFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKN 216

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC--- 286
             +E ++  +S+V+ AC     L  GK +H  + +     +    S+LV MYA CG    
Sbjct: 217 YNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDL 276

Query: 287 ----------------------------VVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
                                       + +A  VF+ + +K++V W+ MISG++     
Sbjct: 277 ALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSP 336

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E + LF +MQ  G+ P++ T +SV++AC+H+G +++ K +  L V ++     +   + 
Sbjct: 337 QEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAK-WIHLFVDKNGFGGALPINNA 395

Query: 379 MIDILGRAGLIHEAYDLILNMP 400
           +I++  + G +  A  +   MP
Sbjct: 396 LIEMYAKCGSLERARRIFDKMP 417



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 137/263 (52%), Gaps = 10/263 (3%)

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD---ASRVFESM 196
           ++  A ++   +   KQ+H   L++ +DR+  +   L  V + C L S    A  VF  +
Sbjct: 25  TLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKL--VISSCALSSSLDYALSVFNLI 82

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           P+      +  +    ++E  E+ L+++ R +  GL  ++F+   ++ A + + +L++G 
Sbjct: 83  PKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL 142

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           ++H +  K GF S+ F  + LV MYA CG + +A  +F  +  ++VV W+ MI G+ +  
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              + ++LFE+M+   + P+E    +VLSAC   G +  GK   D ++ ++N++ +    
Sbjct: 203 LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIM-ENNIVVDPHLQ 261

Query: 377 SCMIDILGRAGLIHEAYDLILNM 399
           S ++ +    G    + DL LN+
Sbjct: 262 SALVTMYASCG----SMDLALNL 280


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/594 (36%), Positives = 354/594 (59%), Gaps = 14/594 (2%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
           +FS   +A A  N        L + L++     + V GK  H   +    + +      L
Sbjct: 238 TFSKMRMAGAKPNP-----FVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGAL 292

Query: 75  INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
           ++ Y+KCG I  AR VF+ +P   ++ W+ +I  Y  + + ++A  +F+ M+R    P +
Sbjct: 293 LDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVP-N 351

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
           EF++S VL ACA    +   +Q+H   +K   +  +FVG AL+DVYAKC  + ++  +F 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
           S+ + NEV+W++++ G+ Q+   E+AL +F+  +   +   Q T SSV+ ACA  A++  
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKH 471

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
             Q+H+++ K+ F ++    +SL+D YAKCGC+ DA  VF  I + +VV WN +ISG++ 
Sbjct: 472 TVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYAL 531

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           H R+ + + LF +M ++   PN+ T++++LS C   G+V +G S F+ M   H + P++ 
Sbjct: 532 HGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMD 591

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           HY+C++ +LGRAG +++A   I ++P   +  +W +LL+SC  ++N+ L + +A+++  +
Sbjct: 592 HYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEI 651

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RN 486
           EP +   ++LLSN+YAA    ++VA  RK +R+  VKKE   SWVEIKG+         +
Sbjct: 652 EPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSAD 711

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           HP +  I + LE L  +  + GY P+    LHDV++  K  +L  HSE+LAL +GL    
Sbjct: 712 HPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTP 771

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           PG PIRIMKNLR C DCH+  K  S+I  RE +VRD+NRFHHF  G CSC D+W
Sbjct: 772 PGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 189/328 (57%), Gaps = 3/328 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           LQ C        G+  HA+++  G     DT  +N+L+N Y+K G ++ AR++FD MP+R
Sbjct: 54  LQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPER 113

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VS+ T++  Y   G  +EA  LF  + REG    + F ++++L    A         +
Sbjct: 114 NMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHE-VNHFVLTTILKVLVAMDAPGLTCCI 172

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A K   DRN FVG++L+D Y+ CG +S A  VF+ +  ++ VTW++MV+ + +N++ 
Sbjct: 173 HACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIP 232

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           E+AL  F + ++ G + N F ++SV+ A   L++ + GK +H    KT   +      +L
Sbjct: 233 EDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGAL 292

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +DMYAKCG + DA  VF  I   +V+LW+ +IS +++  ++ +   +F +M ++ + PNE
Sbjct: 293 LDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNE 352

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVK 365
            +   VL AC+++  ++ G+   +L++K
Sbjct: 353 FSLSGVLQACANVAFLDLGQQIHNLVIK 380


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/587 (37%), Positives = 348/587 (59%), Gaps = 23/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL ATL +C        GK  H   I  G  + T   N L + Y+K G +  A + F  +
Sbjct: 181 TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI 240

Query: 95  PQRCIVSWNTIIGSYTTNGREQE-AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P++ +++W T+I +   +    E  ++LFI+ML +G  P +EFT++SV+  C  + D+  
Sbjct: 241 PEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMP-NEFTLTSVMSLCGTRLDLNL 299

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+  F+ K   + N+ V  + + +Y + G   +A R+FE M + + +TW++M++G+ Q
Sbjct: 300 GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQ 359

Query: 214 ------NELYE-----EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
                 ++L       +AL +FR  +   ++ + FT SS++  C+ + AL QG+Q+HA  
Sbjct: 360 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQT 419

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K+GF S++   S+LV+MY KCGC+ DA   F  +  +  V W +MISG+S+H +  E +
Sbjct: 420 IKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAI 479

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE+M+ AG+ PNE T++S+LSACS+ G+VE+ + YFD+M K++ + P V HY CMID+
Sbjct: 480 QLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDM 539

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
             R G + +A+  I    F+   ++W SL+A CR++ N+ELA  AA +L  ++P     +
Sbjct: 540 FVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETY 599

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIY 494
           +LL N+Y +  RW++VAR RKL++  +V   + +SW+ IK K        R HP+  E+Y
Sbjct: 600 ILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELY 659

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL--LIHHSEKLALTFGLMCLCPGVPIR 552
             LE L+E+ K +GY+P    +L D ED  K     L HHSE+LA+  GL+   PG  +R
Sbjct: 660 QLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVR 719

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           + KN+ +C DCHS +K  S +  RE IVRD  R H F +G CSC DF
Sbjct: 720 VTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 199/386 (51%), Gaps = 15/386 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C    +    +  H  +   G   D   +  L+N Y +CG    AR++FD MP+R +
Sbjct: 85  LHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNV 144

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W  ++  YT N +    + +F+ ML  G+ P S +T+ + L AC A  DV   KQ+H 
Sbjct: 145 VTWTALVTGYTLNSQPALGLEVFVEMLEMGRYP-SHYTLGATLNACLASCDVDLGKQVHG 203

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN-ELYE 218
           +A+K   +    +G +L  +YAK G +  A R F  +PE+N +TW++M++   ++ E  E
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVE 263

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
             L LF    + G+  N+FT++SV+  C     L  GKQV A   K G  +N+   +S +
Sbjct: 264 LGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTM 323

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR-----------HARSVEVMILFEK 327
            +Y + G   +A  +F  +E+ +++ WN MISG+++            +R  + + +F  
Sbjct: 324 YLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRD 383

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           ++++ + P+  T+ S+LS CS +  +E+G+      +K    L +V   S ++++  + G
Sbjct: 384 LKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVVNSALVNMYNKCG 442

Query: 388 LIHEAYDLILNMPFDATASMWGSLLA 413
            I +A    L MP   T   W S+++
Sbjct: 443 CIQDANKAFLEMP-TRTFVTWTSMIS 467



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 137/294 (46%), Gaps = 8/294 (2%)

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           + ML EGK   S   V  +L  C     +   + +H    K     ++FV T+L++ Y +
Sbjct: 67  MTMLTEGKAVQSAMYVP-LLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMR 125

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG   DA R+F+ MPERN VTW+++V G+  N      L +F     +G   + +T+ + 
Sbjct: 126 CGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGAT 185

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + AC     +  GKQVH    K G  S     +SL  +YAK G +  A   F  I EKNV
Sbjct: 186 LNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNV 245

Query: 303 VLWNTMISGFSRHARSVEV-MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY-- 359
           + W TMIS  +     VE+ + LF  M   G+ PNE T  SV+S C     +  GK    
Sbjct: 246 ITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA 305

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           F   +     LP     S M   L R G   EA  L   M  DA+   W ++++
Sbjct: 306 FSFKIGCETNLP--VKNSTMYLYL-RKGETDEAMRLFEQME-DASIITWNAMIS 355



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T  + L  C+   A  +G+  HA+ I  G  +D + ++ L+N Y+KCG I  A K F
Sbjct: 392 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EMP R  V+W ++I  Y+ +G+ QEA+ LF  M   G  P +E T  S+L AC+    V
Sbjct: 452 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRP-NEITFVSLLSACSYAGLV 510

Query: 152 FECKQLHVFAL---KAAMDRNVFVGTALLDVYAKCGLISDA-SRVFESMPERNEVTWSSM 207
            E +  H F +   +  ++  V     ++D++ + G + DA S +  +  E NE  WSS+
Sbjct: 511 EEAE--HYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSL 568

Query: 208 VAG 210
           VAG
Sbjct: 569 VAG 571


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/587 (37%), Positives = 348/587 (59%), Gaps = 23/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL ATL +C        GK  H   I  G  + T   N L + Y+K G +  A + F  +
Sbjct: 141 TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI 200

Query: 95  PQRCIVSWNTIIGSYTTNGREQE-AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P++ +++W T+I +   +    E  ++LFI+ML +G  P +EFT++SV+  C  + D+  
Sbjct: 201 PEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMP-NEFTLTSVMSLCGTRLDLNL 259

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+  F+ K   + N+ V  + + +Y + G   +A R+FE M + + +TW++M++G+ Q
Sbjct: 260 GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQ 319

Query: 214 ------NELYE-----EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
                 ++L       +AL +FR  +   ++ + FT SS++  C+ + AL QG+Q+HA  
Sbjct: 320 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQT 379

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K+GF S++   S+LV+MY KCGC+ DA   F  +  +  V W +MISG+S+H +  E +
Sbjct: 380 IKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAI 439

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE+M+ AG+ PNE T++S+LSACS+ G+VE+ + YFD+M K++ + P V HY CMID+
Sbjct: 440 QLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDM 499

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
             R G + +A+  I    F+   ++W SL+A CR++ N+ELA  AA +L  ++P     +
Sbjct: 500 FVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETY 559

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIY 494
           +LL N+Y +  RW++VAR RKL++  +V   + +SW+ IK K        R HP+  E+Y
Sbjct: 560 ILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELY 619

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL--LIHHSEKLALTFGLMCLCPGVPIR 552
             LE L+E+ K +GY+P    +L D ED  K     L HHSE+LA+  GL+   PG  +R
Sbjct: 620 QLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVR 679

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           + KN+ +C DCHS +K  S +  RE IVRD  R H F +G CSC DF
Sbjct: 680 VTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 183/339 (53%), Gaps = 15/339 (4%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           AR++FD MP+R +V+W  ++  YT N +    + +F+ ML  G+ P S +T+ + L AC 
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYP-SHYTLGATLNACL 150

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           A  DV   KQ+H +A+K   +    +G +L  +YAK G +  A R F  +PE+N +TW++
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 207 MVAGFVQN-ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           M++   ++ E  E  + LF    + G+  N+FT++SV+  C     L  GKQV A   K 
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKI 270

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR----------- 314
           G  +N+   +S + +Y + G   +A  +F  +E+ +++ WN MISG+++           
Sbjct: 271 GCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQA 330

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
            +R  + + +F  ++++ + P+  T+ S+LS CS +  +E+G+      +K    L +V 
Sbjct: 331 RSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVV 389

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
             S ++++  + G I +A    L MP   T   W S+++
Sbjct: 390 VNSALVNMYNKCGCIQDANKAFLEMP-TRTFVTWTSMIS 427



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 108/229 (47%), Gaps = 7/229 (3%)

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
           DA R+F+ MPERN VTW+++V G+  N      L +F     +G   + +T+ + + AC 
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
               +  GKQVH    K G  S     +SL  +YAK G +  A   F  I EKNV+ W T
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 308 MISGFSRHARSVEV-MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY--FDLMV 364
           MIS  +     VE+ M LF  M   G+ PNE T  SV+S C     +  GK    F   +
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKI 270

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
                LP     S M   L R G   EA  L   M  DA+   W ++++
Sbjct: 271 GCETNLP--VKNSTMYLYL-RKGETDEAMRLFEQME-DASIITWNAMIS 315



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T  + L  C+   A  +G+  HA+ I  G  +D + ++ L+N Y+KCG I  A K F
Sbjct: 352 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 411

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EMP R  V+W ++I  Y+ +G+ QEA+ LF  M   G  P +E T  S+L AC+    V
Sbjct: 412 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRP-NEITFVSLLSACSYAGLV 470

Query: 152 FECKQLHVFAL---KAAMDRNVFVGTALLDVYAKCGLISDA-SRVFESMPERNEVTWSSM 207
            E +  H F +   +  ++  V     ++D++ + G + DA S +  +  E NE  WSS+
Sbjct: 471 EEAE--HYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSL 528

Query: 208 VAG 210
           VAG
Sbjct: 529 VAG 531


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/536 (37%), Positives = 334/536 (62%), Gaps = 51/536 (9%)

Query: 77  FYSKC---GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTP 132
            Y+KC   G +  +RKVF++MP+  ++SW  II +Y  +G  ++EA+ LF  M+      
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS----- 55

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
                 +SV C                            VG +L+ +YA+ G + DA + 
Sbjct: 56  ------ASVNC----------------------------VGNSLISMYARSGRMEDARKA 81

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ + E+N V+++++V G+ +N   EEA +LF      G+  + FT +S++   A + A+
Sbjct: 82  FDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAM 141

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            +G+Q+H  L K G+ SN    ++L+ MY++CG +  A+ VF+ +E++NV+ W +MI+GF
Sbjct: 142 GKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGF 201

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           ++H  +   + +F KM + G  PNE TY++VLSACSH+GM+ +G+ +F+ M K+H ++P 
Sbjct: 202 AKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPR 261

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           + HY+CM+D+LGR+GL+ EA + I +MP  A A +W +LL +CR + N EL   AA+ + 
Sbjct: 262 MEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMIL 321

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GK 484
             EPD+   ++LLSN++A+  +W++V + RK +++  + KE   SW+E++        G+
Sbjct: 322 EQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGE 381

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
            +HP+  +IY +L++L  ++K++GY P+T+  LHD+E+ +K++ L  HSEK+A+ FGL+ 
Sbjct: 382 TSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLIS 441

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
                PIRI KNLR+CGDCH+ +K+ S   GRE +VRD NRFHH  NG CSC D+W
Sbjct: 442 TSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 133/249 (53%), Gaps = 3/249 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N LI+ Y++ G +  ARK FD + ++ +VS+N I+  Y  N + +EA  LF N + +   
Sbjct: 63  NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF-NEIADTGI 121

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             S FT +S+L   A+   + + +Q+H   LK     N  +  AL+ +Y++CG I  A +
Sbjct: 122 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 181

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF  M +RN ++W+SM+ GF ++     AL +F +    G + N+ T  +V+ AC+ +  
Sbjct: 182 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 241

Query: 252 LIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMI 309
           + +G K  +++  + G    M   + +VD+  + G +V+A  F+ S     + ++W T++
Sbjct: 242 ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 301

Query: 310 SGFSRHARS 318
                H  +
Sbjct: 302 GACRVHGNT 310



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 2/164 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L   A   A  +G+  H +++  G  ++    N LI+ YS+CG I  A +VF+EM
Sbjct: 127 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM 186

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++SW ++I  +  +G    A+ +F  ML  G  P +E T  +VL AC+    + E 
Sbjct: 187 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP-NEITYVAVLSACSHVGMISEG 245

Query: 155 -KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            K  +    +  +   +     ++D+  + GL+ +A     SMP
Sbjct: 246 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 289


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 348/580 (60%), Gaps = 21/580 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI---LINFYSKCGLISGARKV 90
           ST    ++ CA  +     +  H+ ++  G +   LT N+   L + YSKCG ++ A  +
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFH---LTGNVMTALADAYSKCGELADALNI 359

Query: 91  FD-EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           F      R +VSW  II     NG    AV LF  M RE +   +EFT S++L A  +  
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM-REDRVMPNEFTYSAMLKASLS-- 416

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
                 Q+H   +K       FVGTALL  Y+K G   DA  +F+ + +++ V WS+M++
Sbjct: 417 --ILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLS 474

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFG 268
              Q    E A  LF +  + G++ N+FTISSVI ACA  +A + QG+Q HA+  K  + 
Sbjct: 475 CHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYH 534

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
             +  +S+LV MY++ G +  A  VF    ++++V WN+MISG+++H  S++ +  F +M
Sbjct: 535 DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQM 594

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           + +G+  +  T+++V+  C+H G+V +G+ YFD MV+ H + P + HY+CM+D+  RAG 
Sbjct: 595 EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGK 654

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + E   LI +MPF A A +W +LL +CR ++N+EL + +A +L  +EP ++  ++LLSNI
Sbjct: 655 LDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNI 714

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKL 500
           YAA  +W+E    RKL+   +VKKE   SW++IK K        ++HP   +IY KL+ +
Sbjct: 715 YAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVI 774

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
           +  +K+ GY P T   LHD+ + +K+ +L+ HSE+LAL FGL+   PG P++I+KNLR+C
Sbjct: 775 ITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVC 834

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCH  MK  S I  RE I+RD +RFHHF  G+CSC DFW
Sbjct: 835 GDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L + A + A   G+  HA+ +  G  +     N L+N Y+KCGL+  A+ VF+ M
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWNT++     N  E EA+ LF +  R      ++ T ++V+  CA  + +   
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLF-HESRATMGKMTQSTYATVIKLCANLKQLALA 321

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE-SMPERNEVTWSSMVAGFVQ 213
           +QLH   LK        V TAL D Y+KCG ++DA  +F  +   RN V+W+++++G +Q
Sbjct: 322 RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQ 381

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     A++LF R +   +  N+FT S+++ A    +  I   Q+HA + KT +    F 
Sbjct: 382 NGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA----SLSILPPQIHAQVIKTNYQHIPFV 437

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+  Y+K G   DA  +F  IE+K+VV W+ M+S  ++         LF KM   G+
Sbjct: 438 GTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGI 497

Query: 334 HPNEQTYISVLSACS-HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            PNE T  SV+ AC+     V++G+ +  + +K +     +   S ++ +  R G I  A
Sbjct: 498 KPNEFTISSVIDACACPSAGVDQGRQFHAISIK-YRYHDAICVSSALVSMYSRKGNIDSA 556

Query: 393 YDLILNMPFDATASMWGSLLA 413
             ++     D     W S+++
Sbjct: 557 -QIVFERQTDRDLVSWNSMIS 576



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 173/315 (54%), Gaps = 3/315 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI-LINFYSKCGLISGARKVFD 92
           +TL   L++C      V G+  H   +  G +   +++   L++ Y KCG +    +VF+
Sbjct: 100 ATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFE 159

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            MP++ +V+W +++          E +ALF  M  EG  P + FT +SVL A A++  + 
Sbjct: 160 GMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWP-NPFTFASVLSAVASQGALD 218

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +++H  ++K     +VFV  +L+++YAKCGL+ DA  VF  M  R+ V+W++++AG  
Sbjct: 219 LGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQ 278

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            NE   EAL LF  ++    +  Q T ++VI  CA L  L   +Q+H+ + K GF     
Sbjct: 279 LNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN 338

Query: 273 AASSLVDMYAKCGCVVDAYFVFS-GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             ++L D Y+KCG + DA  +FS     +NVV W  +ISG  ++      ++LF +M++ 
Sbjct: 339 VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRED 398

Query: 332 GLHPNEQTYISVLSA 346
            + PNE TY ++L A
Sbjct: 399 RVMPNEFTYSAMLKA 413



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 181/344 (52%), Gaps = 6/344 (1%)

Query: 86  GARKVFDEMPQR-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
           GAR   DE+P+R   V  N ++  Y   G   E +  F ++ R G       T+S VL A
Sbjct: 50  GARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQF-SVARRGGVLVDSATLSCVLKA 108

Query: 145 CAAKRDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           C +  D    +QLH   +K   DR  V  GT+L+D+Y KCG + +   VFE MP++N VT
Sbjct: 109 CRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVT 168

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+S++ G    +++ E + LF R +  G+  N FT +SV+ A A   AL  G++VHA   
Sbjct: 169 WTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSV 228

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           K G  S++F  +SL++MYAKCG V DA  VF+ +E +++V WNT+++G   +   +E + 
Sbjct: 229 KFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQ 288

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDI 382
           LF + +       + TY +V+  C+++  +   +     ++K   ++  NV   + + D 
Sbjct: 289 LFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TALADA 346

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             + G + +A ++            W ++++ C    ++ LA +
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/576 (35%), Positives = 344/576 (59%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T    L++C+       G+  HA++  +G + D    N LI  Y+KC  +  AR VF+  
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            +P+R IVSW  I+ +Y  NG   EA+ +F  M +    P     + SVL A    +D+ 
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKP-DWVALVSVLNAFTCLQDLK 239

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + + +H   +K  ++    +  +L  +YAKCG ++ A  +F+ M   N + W++M++G+ 
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +N    EA+ +F       +  +  +I+S I ACA + +L Q + ++  + ++ +  ++F
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +S+L+DM+AKCG V  A  VF    +++VV+W+ MI G+  H R+ E + L+  M++ G
Sbjct: 360 ISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +HPN+ T++ +L AC+H GMV +G  +F+ M   H + P   HY+C+ID+LGRAG + +A
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQA 478

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y++I  MP     ++WG+LL++C+ +R++EL E AA+QLF ++P N G+++ LSN+YAA 
Sbjct: 479 YEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAA 538

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
           R W+ VA  R  +++  + K+   SWVE++G+        ++HPR  EI  ++E +   +
Sbjct: 539 RLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRL 598

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K+ G+    +  LHD+ D   +E L  HSE++A+ +GL+    G P+RI KNLR C +CH
Sbjct: 599 KEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCH 658

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  K  S++  RE +VRD NRFHHF +G CSC D+W
Sbjct: 659 AATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 209/399 (52%), Gaps = 17/399 (4%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           +++S I S S  A+  + +T +A L            K  HA+++ +GL         LI
Sbjct: 13  YTNSGIHSDSFYASLIDSATHKAQL------------KQIHARLLVLGLQFSGFLITKLI 60

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           +  S  G I+ AR+VFD++P+  I  WN II  Y+ N   Q+A+ ++ NM     +P S 
Sbjct: 61  HASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDS- 119

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT   +L AC+    +   + +H    +   D +VFV   L+ +YAKC  +  A  VFE 
Sbjct: 120 FTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEG 179

Query: 196 --MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
             +PER  V+W+++V+ + QN    EAL +F + + + ++ +   + SV+ A   L  L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLK 239

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           QG+ +HA + K G         SL  MYAKCG V  A  +F  ++  N++LWN MISG++
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           ++  + E + +F +M    + P+  +  S +SAC+ +G +E+ +S ++  V + +   +V
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEY-VGRSDYRDDV 358

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           F  S +ID+  + G + E   L+ +   D    +W +++
Sbjct: 359 FISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMI 396


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/587 (37%), Positives = 348/587 (59%), Gaps = 23/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL ATL +C        GK  H   I  G  + T   N L + Y+K G +  A + F  +
Sbjct: 181 TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI 240

Query: 95  PQRCIVSWNTIIGSYTTNGREQE-AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P++ +++W T+I +   +    E  ++LFI+ML +G  P +EFT++SV+  C  + D+  
Sbjct: 241 PEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMP-NEFTLTSVMSLCGTRLDLNL 299

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+  F+ K   + N+ V  + + +Y + G   +A R+FE M + + +TW++M++G+ Q
Sbjct: 300 GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQ 359

Query: 214 ------NELYE-----EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
                 ++L       +AL +FR  +   ++ + FT SS++  C+ + AL QG+Q+HA  
Sbjct: 360 IMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQT 419

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K+GF S++   S+LV+MY KCGC+ DA   F  +  +  V W +MISG+S+H +  E +
Sbjct: 420 IKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAI 479

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE+M+ AG+ PNE T++S+LSACS+ G+VE+ + YFD+M K++ + P V HY CMID+
Sbjct: 480 QLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDM 539

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
             R G + +A+  I    F+   ++W SL+A CR++ N+ELA  AA +L  ++P     +
Sbjct: 540 FVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETY 599

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIY 494
           +LL N+Y +  RW++VAR RKL++  +V   + +SW+ IK K        R HP+  E+Y
Sbjct: 600 ILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELY 659

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL--LIHHSEKLALTFGLMCLCPGVPIR 552
             LE L+E+ K +GY+P    +L D ED  K     L HHSE+LA+  GL+   PG  +R
Sbjct: 660 QLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVR 719

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           + KN+ +C DCHS +K  S +  RE IVRD  R H F +G CSC DF
Sbjct: 720 VTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 199/386 (51%), Gaps = 15/386 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C    +    +  H  +   G + D   +  L+N Y +C     AR++FD MP+R +
Sbjct: 85  LHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNV 144

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W  ++  YT N +    + +F+ ML  G+ P S +T+ + L AC A  DV   KQ+H 
Sbjct: 145 VTWTALVTGYTLNSQPALGLEVFVEMLEMGRYP-SHYTLGATLNACLASCDVDLGKQVHG 203

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN-ELYE 218
           +A+K   +    +G +L  +YAK G +  A R F  +PE+N +TW++M++   ++ E  E
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVE 263

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
             + LF    + G+  N+FT++SV+  C     L  GKQV A   K G  +N+   +S +
Sbjct: 264 LGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTM 323

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR-----------HARSVEVMILFEK 327
            +Y + G   +A  +F  +E+ +++ WN MISG+++            +R  + + +F  
Sbjct: 324 YLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRD 383

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           ++++ + P+  T+ S+LS CS +  +E+G+      +K    L +V   S ++++  + G
Sbjct: 384 LKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVVNSALVNMYNKCG 442

Query: 388 LIHEAYDLILNMPFDATASMWGSLLA 413
            I +A    L MP   T   W S+++
Sbjct: 443 CIQDANKAFLEMP-TRTFVTWTSMIS 467



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 136/294 (46%), Gaps = 8/294 (2%)

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           + ML EGK   S   V  +L  C     +   + +H    K     ++FV T+L++ Y +
Sbjct: 67  MTMLTEGKAVQSAMYVP-LLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMR 125

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           C    DA R+F+ MPERN VTW+++V G+  N      L +F     +G   + +T+ + 
Sbjct: 126 CSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGAT 185

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + AC     +  GKQVH    K G  S     +SL  +YAK G +  A   F  I EKNV
Sbjct: 186 LNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNV 245

Query: 303 VLWNTMISGFSRHARSVEV-MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY-- 359
           + W TMIS  +     VE+ M LF  M   G+ PNE T  SV+S C     +  GK    
Sbjct: 246 ITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA 305

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           F   +     LP     S M   L R G   EA  L   M  DA+   W ++++
Sbjct: 306 FSFKIGCETNLP--VKNSTMYLYL-RKGETDEAMRLFEQME-DASIITWNAMIS 355



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T  + L  C+   A  +G+  HA+ I  G  +D + ++ L+N Y+KCG I  A K F
Sbjct: 392 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EMP R  V+W ++I  Y+ +G+ QEA+ LF  M   G  P +E T  S+L AC+    V
Sbjct: 452 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRP-NEITFVSLLSACSYAGLV 510

Query: 152 FECKQLHVFAL---KAAMDRNVFVGTALLDVYAKCGLISDA-SRVFESMPERNEVTWSSM 207
            E +  H F +   +  ++  V     ++D++ + G + DA S +  +  E NE  WSS+
Sbjct: 511 EEAE--HYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSL 568

Query: 208 VAG 210
           VAG
Sbjct: 569 VAG 571


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/585 (37%), Positives = 347/585 (59%), Gaps = 16/585 (2%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           +SA  N+T   T   TL +CAR       +    +    G  +D    + L++ YS+CG 
Sbjct: 101 SSARPNST---TFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGA 157

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  A +VFD MP++  V+W+T++  + T GR  EA+A++  M RE      E  +  V+ 
Sbjct: 158 MEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRM-REHGVSDDEVVMVGVIQ 216

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           AC +  +      +H   L+  M  +V   T+L+ +YAK G +  A +VF  MP RN+VT
Sbjct: 217 ACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVT 276

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           WS++++GF QN    EAL LFR  Q  GL+   + + S + ACA +  L  GK +H  + 
Sbjct: 277 WSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFIL 336

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +          ++++DMY+KCG +  A  +F+ +  +++VLWN +I+    H    + + 
Sbjct: 337 RR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALA 395

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF+++ + G+ P+  T+ S+LSA SH G+VE+GK +FD M+K+  + P   HY C++D+L
Sbjct: 396 LFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLL 455

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R+GL+ EA D++ +M  + T ++W  LL+ C N + LEL E  AK++  + P++ G   
Sbjct: 456 ARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLA 515

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYS 495
           L+SN+YAA ++W++V   RKL++DS  KK    S +E+KG R        +HP+  EI  
Sbjct: 516 LVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILK 575

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
            + KL  EM+KLGY P TE   HD+++    +LL +HSE+LA+ FGL+   PG  + I+K
Sbjct: 576 MVAKLNSEMRKLGYVPRTEFVYHDLDE---DQLLSYHSERLAIAFGLLNTSPGTRLVIIK 632

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+CGDCH  +K+ S+I  RE +VRD  RFHHF +G+CSC D+W
Sbjct: 633 NLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 179/354 (50%), Gaps = 17/354 (4%)

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           WN ++ +++  G    A+ +F  +    +   + FT++  L ACA   D+   + + V A
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSARPNSTTFTLT--LTACARLGDLDAAESVRVRA 133

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
             A    +VFV +ALL +Y++CG + +A RVF+ MP ++ V WS+MVAGFV      EAL
Sbjct: 134 FAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEAL 193

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            ++ R +  G+  ++  +  VI AC        G  VH  L +     ++   +SLV MY
Sbjct: 194 AMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMY 253

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           AK G +  A  VF  +  +N V W+ +ISGF+++ R+VE + LF ++Q  GL P     +
Sbjct: 254 AKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALV 313

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM-----IDILGRAGLIHEAYDLI 396
           S L AC+ +G ++ GKS    ++++         + C+     +D+  + G +  A  L 
Sbjct: 314 SALLACASVGFLKLGKSIHGFILRR-------LEWQCILGTAVLDMYSKCGSLESARKL- 365

Query: 397 LNMPFDATASMWGSLLASCRNY--RNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
            N        +W +++A C  +   +  LA        G++PD+A    LLS +
Sbjct: 366 FNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSAL 419


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/590 (38%), Positives = 334/590 (56%), Gaps = 52/590 (8%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K++    N D LT   ++  Y + G +  AR VF+E+  +  V WN +I  Y  +G   E
Sbjct: 218 KVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVE 277

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV--------FALKAAMDRN 169
           A  LF  M+ E + P  EFT +SVL ACA        K +H         F  +AA+  N
Sbjct: 278 AFELFRRMVLE-RVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVN 336

Query: 170 VFVGTALLDVYAKCGLISDASR-------------------------------VFESMPE 198
                AL+  Y+KCG I+ A R                               VFE MP 
Sbjct: 337 ----NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +NE++W  MV+G+V     E+AL LF + +   ++   +T +  I AC  L AL  GKQ+
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQL 452

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H  + + GF  +  A ++L+ MYA+CG V +A+ +F  +   + V WN MIS   +H   
Sbjct: 453 HGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHG 512

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E + LF++M   G++P+  ++++VL+AC+H G+V++G  YF+ M +   ++P   HY+ 
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTR 572

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           +ID+LGRAG I EA DLI  MPF+ T S+W ++L+ CR   ++EL   AA QLF M P +
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQH 632

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRI 490
            G ++LLSN Y+A   W + AR RKL+RD  VKKE   SW+E        + G   HP  
Sbjct: 633 DGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEA 692

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
            E+Y  LE +  +M+KLGY P+T+  LHD+E  +K+ +L  HSE+LA+ FGL+ L PG  
Sbjct: 693 HEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGAT 752

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + ++KNLRIC DCH+ + F S+  GRE +VRD+ RFHHF +G CSC ++W
Sbjct: 753 VTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 177/389 (45%), Gaps = 50/389 (12%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +++  L+  Y+    +  A   FD +P  +R  V  N +I +Y        AVA+F ++L
Sbjct: 89  VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 127 REGKTPYSEFTVSSVLCACA--AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
             G     +++ +++L A        V  C QLH   LK+     + V  AL+ +Y KC 
Sbjct: 149 ASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCE 208

Query: 185 ---LISDASRVFESMPERNEVTWSSM-------------------------------VAG 210
                 DA +V + MP ++++TW++M                               ++G
Sbjct: 209 SPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISG 268

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V + +  EA  LFRR  +  +  ++FT +SV+ ACA +     GK VH  + +      
Sbjct: 269 YVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFV 328

Query: 271 MFAA----SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             AA    ++LV  Y+KCG +  A  +F  +  K+VV WNT++SG+   +   + + +FE
Sbjct: 329 PEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFE 388

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M     + NE +++ ++S   H G  E     F+ M +  NV P  + Y+  I   G  
Sbjct: 389 EMP----YKNELSWMVMVSGYVHGGFAEDALKLFNKM-RSENVKPCDYTYAGAIAACGEL 443

Query: 387 GLIHEAYDL---ILNMPFDATASMWGSLL 412
           G +     L   I+ + F+ + S   +L+
Sbjct: 444 GALKHGKQLHGHIVQLGFEGSNSAGNALI 472



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 141/315 (44%), Gaps = 40/315 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----NDTLTSNILINFYSKCGLISGARKV 90
           T  + L +CA       GK  H +II +  N         +N L+ FYSKCG I+ AR++
Sbjct: 296 TFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRI 355

Query: 91  FDEMPQRCIVSWNTIIGSYTTN-------------------------------GREQEAV 119
           FD M  + +VSWNTI+  Y  +                               G  ++A+
Sbjct: 356 FDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDAL 415

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            LF  M  E   P  ++T +  + AC     +   KQLH   ++   + +   G AL+ +
Sbjct: 416 KLFNKMRSENVKP-CDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITM 474

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YA+CG + +A  +F  MP  + V+W++M++   Q+    EAL LF R    G+  ++ + 
Sbjct: 475 YARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISF 534

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFG--SNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
            +V+ AC     + +G +    + K  FG        + L+D+  + G + +A  +   +
Sbjct: 535 LTVLTACNHSGLVDEGFRYFESM-KRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 298 E-EKNVVLWNTMISG 311
             E    +W  ++SG
Sbjct: 594 PFEPTPSIWEAILSG 608


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/622 (38%), Positives = 352/622 (56%), Gaps = 58/622 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L   L +CA   A  RGK  H   +  GL  D    N +++ Y+KCG++  A KVF+ M
Sbjct: 233 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 292

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALF-------------------------------I 123
             + +VSWN ++  Y+  GR  +A+ LF                               +
Sbjct: 293 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 352

Query: 124 NMLREGKTPYSE---FTVSSVLCACAAKRDVFECKQLHVFALKAAMD-------RNVFVG 173
           ++ R+ +   SE    T+ S+L  CA    +   K+ H  A+K  ++        ++ V 
Sbjct: 353 DVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVI 412

Query: 174 TALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
            AL+D+Y+KC     A  +F+ +P  +R+ VTW+ ++ G  Q+    EAL LF  +Q+L 
Sbjct: 413 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELF--SQMLQ 470

Query: 232 LE----YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM-FAASSLVDMYAKCGC 286
            +     N FTIS  + ACA L AL  G+Q+HA + +  F S M F A+ L+DMY+K G 
Sbjct: 471 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD 530

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           V  A  VF  + ++N V W ++++G+  H R  E + +F +MQ+ GL P+  T++ VL A
Sbjct: 531 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYA 590

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CSH GMV++G +YF+ M K   V+P   HY+CM+D+L RAG + EA +LI  MP   T +
Sbjct: 591 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 650

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +W +LL++CR Y N+EL E AA QL  +E  N G++ LLSNIYA  R W++VAR R L++
Sbjct: 651 VWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMK 710

Query: 467 DSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
           ++ +KK    SWV+          G  +HP   +IY  L  L++ +K LGY P+    LH
Sbjct: 711 NTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALH 770

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           DV+D  K +LL  HSEKLAL +G++   PG PIRI KNLR CGDCHS   + S I   E 
Sbjct: 771 DVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEI 830

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           IVRD +RFHHF NGSCSC  +W
Sbjct: 831 IVRDSSRFHHFKNGSCSCRGYW 852



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 217/455 (47%), Gaps = 52/455 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C    +   G   HA +   G   +    N L++ Y +CG    AR+VFDEM
Sbjct: 128 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 187

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            +R +   VSWN+I+ +Y   G    A+ +F  M  +        ++ +VL ACA+    
Sbjct: 188 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 247

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-------------- 197
              KQ+H +AL++ +  +VFVG A++D+YAKCG++ +A++VFE M               
Sbjct: 248 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 307

Query: 198 ---------------------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
                                E N VTWS+++AG+ Q  L  EAL +FR+ ++ G E N 
Sbjct: 308 SQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNV 367

Query: 237 FTISSVICACAGLAALIQGKQV--HAV-----LCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            T+ S++  CA    L+ GK+   HA+     L +   G ++   ++L+DMY+KC     
Sbjct: 368 VTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 427

Query: 290 AYFVFSGIEEKN--VVLWNTMISGFSRHARSVEVMILFEKMQQAG--LHPNEQTYISVLS 345
           A  +F  I  K+  VV W  +I G ++H  + E + LF +M Q    + PN  T    L 
Sbjct: 428 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 487

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           AC+ +G +  G+     +++       +F  +C+ID+  ++G +  A  +  NM      
Sbjct: 488 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNG 546

Query: 406 SMWGSLLASCRNY-RNLELAEIAAK-QLFGMEPDN 438
             W SL+     + R  E  +I  + Q  G+ PD 
Sbjct: 547 VSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDG 581



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 6/215 (2%)

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+ ++   V     E+ L L+RR Q LG   + +T   V+ AC  + +   G  VHAV+ 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV---VLWNTMISGFSRHARSVE 320
            +GF  N+F  + LV MY +CG   +A  VF  + E+ V   V WN++++ + +   S+ 
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 321 VMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            M +FE+M +  G+ P+  + ++VL AC+ +G   +GK      ++   +  +VF  + +
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFEDVFVGNAV 272

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +D+  + G++ EA  +   M      S W +++  
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTG 306


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/624 (36%), Positives = 354/624 (56%), Gaps = 55/624 (8%)

Query: 31  TELSTLQAT---LQSCARERAPVRG----------KVCHAKIIGMGLNNDTLTSNILINF 77
           + L  LQA+   L S    + P+ G          K  H++II +GL+ D      +I F
Sbjct: 2   SSLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKF 61

Query: 78  --YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
              SK G ++ A +VFD++P      +NTI   Y      +  + ++  ML +  +P ++
Sbjct: 62  CAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSP-NK 120

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAM----------------------------- 166
           FT   ++ AC     + E KQ+H   LK                                
Sbjct: 121 FTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDN 180

Query: 167 --DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
              R+V   T+L+  Y++ G +  A  VFE MPERN V+W++M+A +VQ+    EA  LF
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
            R ++  +  ++F  +S++ AC GL AL QGK +H  + K+G   +   A++++DMY KC
Sbjct: 241 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKC 300

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           GC+  A  VF+ + +K +  WN MI G + H +    + LF++M++  + P+  T+++VL
Sbjct: 301 GCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVL 360

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           SAC+H G+VE+GK YF  M +   + P + H+ CM+D+LGRAGL+ EA  LI  MP +  
Sbjct: 361 SACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPD 420

Query: 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
           A + G+L+ +CR + N EL E   K++  +EP N+G ++LL+N+YA+  RWE+VA+ RKL
Sbjct: 421 AGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKL 480

Query: 465 IRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHD 516
           + D  VKK    S +E        I G R HP+  EIY+KL++++E ++ +GY P+T+  
Sbjct: 481 MNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGV 540

Query: 517 LHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGR 576
           LHD+++  K+  L +HSEKLA+ FGL+   PG  +RI KNLRIC DCH   K  S++  R
Sbjct: 541 LHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDR 600

Query: 577 ETIVRDLNRFHHFTNGSCSCWDFW 600
           E I+RD NRFHHF  G CSC D+W
Sbjct: 601 EIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 352/609 (57%), Gaps = 43/609 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T+ + + +C        G+  H   I +  L++D L  N L+++Y+KC  +  AR+ F  
Sbjct: 364 TIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM 423

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP-----------YSEF------ 136
           + Q  +VSWN ++  Y   G  +EA+ L   M  +G  P           ++++      
Sbjct: 424 IKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAA 483

Query: 137 -----------------TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
                            T+S  L AC   R++   K++H + L+  ++ +  VG+AL+ +
Sbjct: 484 LEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISM 543

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y+ C  +  A  VF  +  R+ V W+S+++   Q+     AL L R   +  +E N  T+
Sbjct: 544 YSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTM 603

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            S + AC+ LAAL QGK++H  + + G  +  F  +SL+DMY +CG +  +  +F  + +
Sbjct: 604 VSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQ 663

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           +++V WN MIS +  H   ++ + LF++ +  GL PN  T+ ++LSACSH G++E+G  Y
Sbjct: 664 RDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKY 723

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F +M  ++ + P V  Y+CM+D+L RAG  +E  + I  MPF+  A++WGSLL +CR + 
Sbjct: 724 FKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHC 783

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N +LAE AA+ LF +EP ++GN++L++NIY+A  RWE+ A+ R L+++  V K    SW+
Sbjct: 784 NPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWI 843

Query: 480 EIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E+K        G  +HP + +I +K+E L  ++K++GY P+T   L DV++  K+  L  
Sbjct: 844 EVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCG 903

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEK+AL FGL+    G P+RI+KNLR+CGDCHS  KF S++  R+ I+RD  RFHHF +
Sbjct: 904 HSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVD 963

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 964 GVCSCGDYW 972



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 169/366 (46%), Gaps = 21/366 (5%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   +   +D   F+G+ LL+VY + G + DA R+F+ M ERN  +W++++  +    
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG 169

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
            YEE + LF      G+  + F    V  AC+ L     GK V+  +   GF  N     
Sbjct: 170 DYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 229

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           S++DM+ KCG +  A   F  IE K+V +WN M+SG++      + +     M+ +G+ P
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           ++ T+ +++S  +  G  E+   YF  M    +  PNV  ++ +I    + G   EA  +
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNI---YA 450
              M  +       ++ ++     NL L     +++ G  ++ +   + LL+ N    Y 
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLR-HGREIHGYCIKVEELDSDLLVGNSLVDYY 408

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG----KRNHPRIAEIYSKLEKLVEEMKK 506
           A  R  EVAR RK      +K+    SW  +      + +H    E       L+ EMK 
Sbjct: 409 AKCRSVEVAR-RKF---GMIKQTDLVSWNAMLAGYALRGSHEEAIE-------LLSEMKF 457

Query: 507 LGYKPE 512
            G +P+
Sbjct: 458 QGIEPD 463



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 179/407 (43%), Gaps = 44/407 (10%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + LQ C +      G   HA+++  G++      + L+  Y + G +  AR++FD+M +R
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + SW  I+  Y   G  +E + LF  M+ EG  P   F    V  AC+  ++    K +
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP-DHFVFPKVFKACSELKNYRVGKDV 212

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           + + L    + N  V  ++LD++ KCG +  A R FE +  ++   W+ MV+G+     +
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           ++AL      ++ G++ +Q T +++I                                  
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISG-------------------------------- 300

Query: 278 VDMYAKCGCVVDA--YFV-FSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              YA+ G   +A  YF+   G+++   NVV W  +I+G  ++    E + +F KM   G
Sbjct: 301 ---YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T  S +SAC+++ ++  G+      +K   +  ++   + ++D   +   + E 
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV-EV 416

Query: 393 YDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPD 437
                 M        W ++LA  + R      +  ++  +  G+EPD
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPD 463



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 152/317 (47%), Gaps = 40/317 (12%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+   L +C + R    GK  H  ++   +   T   + LI+ YS C  +  A  VF E
Sbjct: 500 TTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSE 559

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE---GKTPYSEFTVSSVLCACAAKRD 150
           +  R +V WN+II +   +GR   A    +++LRE        +  T+ S L AC+    
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNA----LDLLREMNLSNVEVNTVTMVSALPACSKLAA 615

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + + K++H F ++  +D   F+  +L+D+Y +CG I  + R+F+ MP+R+ V+W+ M++ 
Sbjct: 616 LRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISV 675

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +  +    +A+ LF++ + +GL+ N  T ++++ AC+  + LI+    +  + KT     
Sbjct: 676 YGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSH-SGLIEEGWKYFKMMKT----- 729

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            +A    V+ YA   C+VD                       SR  +  E +   EKM  
Sbjct: 730 EYAMDPAVEQYA---CMVDL---------------------LSRAGQFNETLEFIEKMP- 764

Query: 331 AGLHPNEQTYISVLSAC 347
               PN   + S+L AC
Sbjct: 765 --FEPNAAVWGSLLGAC 779


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 342/577 (59%), Gaps = 15/577 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +C+ E   +  K  H      G   D L +N  +  Y+KC  +  A +VF  M
Sbjct: 403 TVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGM 462

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + + SWN +IG++  NG   +++ LF+ M+  G  P   FT+ S+L ACA  + +   
Sbjct: 463 EGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDP-DRFTIGSLLLACARLKFLRCG 521

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H F L+  ++ + F+G +L+ +Y +C  +     +F+ M  ++ V W+ M+ GF QN
Sbjct: 522 KEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQN 581

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           EL  EAL  FR+    G++  +  ++ V+ AC+ ++AL  GK+VH+   K     + F  
Sbjct: 582 ELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVT 641

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            +L+DMYAKCGC+  +  +F  + EK+  +WN +I+G+  H   ++ + LFE MQ  G  
Sbjct: 642 CALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGR 701

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ VL AC+H G+V +G  Y   M   + V P + HY+C++D+LGRAG + EA  
Sbjct: 702 PDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALK 761

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+  MP +  + +W SLL+SCRNY +LE+ E  +K+L  +EP+ A N++LLSN+YA   +
Sbjct: 762 LVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGK 821

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK-----------RNHPRIAEIYSKLEKLVEE 503
           W+EV + R+ ++++ + K+   SW+EI G                +I + + KLEK   +
Sbjct: 822 WDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEK---K 878

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           + K+GYKP+T   LH++E+  K ++L  HSEKLA++FGL+    G  +R+ KNLRIC DC
Sbjct: 879 ISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDC 938

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+ +K  S++  R+ IVRD  RFHHF NG C+C DFW
Sbjct: 939 HNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 205/411 (49%), Gaps = 8/411 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++T+   + +CA       G V H     +G+  +   +N L++ YSKCG +  AR +F
Sbjct: 298 DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF 357

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D    + +VSWNTII  Y+  G  +    L   M RE K   +E TV +VL AC+ +  +
Sbjct: 358 DMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQL 417

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++H +A +    ++  V  A +  YAKC  +  A RVF  M  +   +W++++   
Sbjct: 418 LSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAH 477

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            QN    ++L LF      G++ ++FTI S++ ACA L  L  GK++H  + + G   + 
Sbjct: 478 AQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDE 537

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F   SL+ +Y +C  ++    +F  +E K++V WN MI+GFS++    E +  F +M   
Sbjct: 538 FIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSG 597

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P E     VL ACS +  +  GK      +K H +  + F    +ID+  + G + +
Sbjct: 598 GIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAH-LSEDAFVTCALIDMYAKCGCMEQ 656

Query: 392 AYDLILNMPFDATASMWGSLLAS----CRNYRNLELAEIAAKQLFGMEPDN 438
           + + I +   +   ++W  ++A         + +EL E+   +  G  PD+
Sbjct: 657 SQN-IFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNK--GGRPDS 704



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 169/314 (53%), Gaps = 5/314 (1%)

Query: 40  LQSCARERAPVRGKVCHAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           L++C   +    G+  HA +     L ND + S  +I  YS CG  S +R VFD   ++ 
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD 158

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  +N ++  Y+ N   ++A++LF+ +L         FT+  V  ACA   DV   + +H
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH 218

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             ALKA    + FVG AL+ +Y KCG +  A +VFE+M  RN V+W+S++    +N  + 
Sbjct: 219 ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFG 278

Query: 219 EALILFRR---AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           E   +F+R   ++  GL  +  T+ +VI ACA +  +  G  VH +  K G    +   +
Sbjct: 279 ECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNN 338

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLH 334
           SLVDMY+KCG + +A  +F     KNVV WNT+I G+S+      V  L ++MQ +  + 
Sbjct: 339 SLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVR 398

Query: 335 PNEQTYISVLSACS 348
            NE T ++VL ACS
Sbjct: 399 VNEVTVLNVLPACS 412



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 173/346 (50%), Gaps = 5/346 (1%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           SA   A +  TL    ++CA       G+  HA  +  G  +D    N LI  Y KCG +
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFV 246

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML---REGKTPYSEFTVSSV 141
             A KVF+ M  R +VSWN+++ + + NG   E   +F  +L    EG  P    T+ +V
Sbjct: 247 ESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVP-DVATMVTV 305

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           + ACAA  +V     +H  A K  +   V V  +L+D+Y+KCG + +A  +F+    +N 
Sbjct: 306 IPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
           V+W++++ G+ +   +     L +  Q    +  N+ T+ +V+ AC+G   L+  K++H 
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
              + GF  +   A++ V  YAKC  +  A  VF G+E K V  WN +I   +++    +
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            + LF  M  +G+ P+  T  S+L AC+ +  +  GK     M++ 
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRN 531


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/500 (40%), Positives = 328/500 (65%), Gaps = 9/500 (1%)

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           RKVF+ MP+R IVSWNT+I     NG  ++A+ +   M      P S FT+SSVL   A 
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS-FTLSSVLPIFAE 208

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
             ++ + K++H +A++   D +VF+G++L+D+YAKC  + D+ RVF  +P+ + ++W+S+
Sbjct: 209 YVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSI 268

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +AG VQN +++E L  F++  +  ++ N  + SS++ ACA L  L  GKQ+H  + ++ F
Sbjct: 269 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             N+F AS+LVDMYAKCG +  A ++F  +E  ++V W  MI G++ H  + + + LF++
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR 388

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M+  G+ PN   +++VL+ACSH G+V++   YF+ M + + ++P + HY+ + D+LGR G
Sbjct: 389 MEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVG 448

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            + EAY+ I +M  + T S+W +LLA+CR ++N+ELAE  +K+LF ++P N G ++LLSN
Sbjct: 449 RLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSN 508

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEK 499
           IY+A  RW++  + R  +RD  +KK+ + SW+EIK        G ++HP    I   L+ 
Sbjct: 509 IYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKV 568

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           L+E+M++ GY  +T   LHDVE+ +K+ LL  HSE+LA+TFG++    G  IR+ KNLR+
Sbjct: 569 LLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRV 628

Query: 560 CGDCHSFMKFASRIAGRETI 579
           C DCH+  KF S+I GRE +
Sbjct: 629 CVDCHTATKFISKIVGREIV 648



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 144/283 (50%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L   A     ++GK  H   I  G + D    + LI+ Y+KC  +  + +VF  +
Sbjct: 198 TLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYML 257

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           PQ   +SWN+II     NG   E +  F  ML     P +  + SS++ ACA    +   
Sbjct: 258 PQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKP-NHVSFSSIMPACAHLTTLHLG 316

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQLH + +++  D NVF+ +AL+D+YAKCG I  A  +F+ M   + V+W++M+ G+  +
Sbjct: 317 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 376

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFA 273
               +A+ LF+R +V G++ N     +V+ AC+    + +  K  +++         +  
Sbjct: 377 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 436

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            +++ D+  + G + +AY   S +  E    +W+T+++    H
Sbjct: 437 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH 479


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/576 (37%), Positives = 343/576 (59%), Gaps = 10/576 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL ++L++ A       G+  H   +  GL         L++ YSKCG +  A+ +FD 
Sbjct: 213 TTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDR 272

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M    +V++N +I  Y+ NG  + +V LF  +   G  P S   V+ +        ++  
Sbjct: 273 MDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELL- 331

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + LH F +KA +D +  V TAL  +Y +   +  A  +F++M E+   +W++M++G+ Q
Sbjct: 332 ARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQ 391

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L E A+ LF+  Q L ++ N  TISS + ACA L AL  GK VH ++ K     N++ 
Sbjct: 392 NGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYV 451

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYAKCG + +A  +F  ++ KNVV WN MISG+  H +  E + L++ M  A +
Sbjct: 452 MTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARI 511

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P   T++SV+ ACSH G+V++G+  F +M  ++ + P + H +CM+D+LGRAG ++EA 
Sbjct: 512 LPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEAL 571

Query: 394 DLILNMPFDATAS-MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           +LI   P  A    +WG+LL +C  ++N +LA++A+++LF ++ +NAG ++LLSN+Y + 
Sbjct: 572 ELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSK 631

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEM 504
           + + E A  R+  +  ++ K    + +EI         G   HP+   IYS LE+L  +M
Sbjct: 632 KHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKM 691

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
            + GY+P TE  L+DVE+  K+ ++  HSEKLA+ FGL+   PG  IRI+KNLR+C DCH
Sbjct: 692 IEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCH 751

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  KF S++  R  +VRD +RFHHF +G CSC D+W
Sbjct: 752 NATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 171/348 (49%), Gaps = 5/348 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            +  H   +  G   DT  ++ L   Y K      ARKVFD +P    + WNT++     
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG 192

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +    EA+  F+ M+  G+      T++S L A A    +   + +H + +K  +  +  
Sbjct: 193 S----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH 248

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V T L+ +Y+KCG +  A  +F+ M   + V ++++++G+  N + E ++ LF+     G
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASG 308

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              N  T+ +VI   +     +  + +HA + K    ++   +++L  +Y +   +  A 
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESAR 368

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  + EK +  WN MISG++++  +   + LF+ MQ+  + PN  T  S LSAC+H+G
Sbjct: 369 SIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLG 428

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            +  GK    ++ K+   L NV+  + +ID+  + G I EA  +   M
Sbjct: 429 ALSLGKWVHRIISKEKLEL-NVYVMTALIDMYAKCGSIAEARSIFDRM 475


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/588 (37%), Positives = 344/588 (58%), Gaps = 20/588 (3%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A+ ++    T     +SCA    P+ G   H  +I  G   +      LI+ Y KC  I+
Sbjct: 49  ASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIA 108

Query: 86  GARKVFDE--MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
            ARKVFDE    +   V +N +I  Y+ N R  +AV LF  M +EG +  +  T+  ++ 
Sbjct: 109 SARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVS-VNAVTMLGLIP 167

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
            CA    +     LH  +++  +D ++ VG  LL +Y +CG +  A ++F+ MPE+  +T
Sbjct: 168 VCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLIT 227

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W++M++G+ QN L    L L+R+ +  G+  +  T+  V+ +CA L A   G++V   + 
Sbjct: 228 WNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIE 287

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
            +GFG N F  ++L++MYA+CG +V A  +F G+ EKNV+ W  +I+G+  H +    + 
Sbjct: 288 LSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQ 347

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF++M  +   P+   ++SVLSACSH G+ EKG  YF  M + + + P   HYSC++D+L
Sbjct: 348 LFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLL 407

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
           GRAG + EA  LI +M  +   ++WG+LL +C+ +RN+ELAE+A +++   EP N G ++
Sbjct: 408 GRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYV 467

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLSNI++     E + R R ++R+ ++KKE   S+VE +G+        R HP+  EIY 
Sbjct: 468 LLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYH 527

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH---HSEKLALTFGLMCLCPGVPIR 552
            L+ L + +K+ G   + +      ++SR +EL+     HSEKLA+ FGL+   PG  I 
Sbjct: 528 MLDGLEDIIKRRGGSNDND------QESRNEELITGMGVHSEKLAIAFGLINTEPGTEIT 581

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++KNLR+CGDCH F+K  S I  R+ +VRD  RFHHF NG CSC D+W
Sbjct: 582 VIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 168/331 (50%), Gaps = 5/331 (1%)

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           Q    SWN  +         QEA+ L+  ML  G +P + FT      +CA+        
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSP-NAFTFPFAFKSCASLSLPLAGS 76

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF-ESMPERN-EVTWSSMVAGFVQ 213
           QLH   +K   +   FV T+L+ +Y KC  I+ A +VF E+   RN  V +++++AG+  
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N  + +A++LFR+ +  G+  N  T+  +I  CAG   L  G  +HA   + G   ++  
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + L+ MY +CG V  A  +F G+ EK ++ WN MISG++++  +  V+ L+ KM+  G+
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T + VLS+C+H+G    G+   +  ++      N F  + +I++  R G + +A 
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGRE-VEQRIELSGFGFNPFLKNALINMYARCGNLVKAR 315

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELA 424
            +   M      S W +++A    +   ELA
Sbjct: 316 AIFDGMTEKNVIS-WTAIIAGYGMHGQGELA 345


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/560 (38%), Positives = 337/560 (60%), Gaps = 13/560 (2%)

Query: 52  GKVCHAKIIGMGLNNDTL---TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           GK  HA +I    NN+ +   T+  L++ Y+KCG +  AR++F+ + Q+ +VSW  +I  
Sbjct: 214 GKAMHAYVI-RNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 272

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
              + R +E   LFI M  E   P +E T+ S++  C     +   KQLH + L+     
Sbjct: 273 CIRSNRLEEGTKLFIRMQEENIFP-NEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           ++ + TAL+D+Y KC  I +A  +F+S   R+ + W++M++ + Q    ++A  LF + +
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G+   + TI S++  CA   AL  GK VH+ + K     +    ++LVDMYAKCG + 
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDIN 451

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  +F     +++ +WN +I+GF+ H    E + +F +M++ G+ PN+ T+I +L ACS
Sbjct: 452 AAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           H G+V +GK  F+ MV    ++P + HY CM+D+LGRAGL+ EA+++I +MP      +W
Sbjct: 512 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 571

Query: 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
           G+L+A+CR ++N +L E+AA QL  +EP+N G ++L+SNIYAA  RW + A  RK ++  
Sbjct: 572 GALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTV 631

Query: 469 EVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            +KKE   S +E+         G ++HP+I  I   L ++  ++ + GY P+T   L ++
Sbjct: 632 GMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI 691

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           ++  K+  L +HSEKLA+ FGL+   P  PIRI+KNLR+C DCH+  K  S+I GR  IV
Sbjct: 692 DEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIV 751

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD NRFHHF  G CSC D+W
Sbjct: 752 RDRNRFHHFREGYCSCGDYW 771



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 214/408 (52%), Gaps = 13/408 (3%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L++C +      GK  H  ++  GL+ D    N L+  Y +C  +  AR VFD+M +R
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSW+T+I S + N     A+ L   M      P SE  + S++   A   ++   K +
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRP-SEVAMVSMVNLFADTANMRMGKAM 217

Query: 158 HVFALKAAMDRNVFV--GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           H + ++ + + ++ V   TALLD+YAKCG +  A ++F  + ++  V+W++M+AG +++ 
Sbjct: 218 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 277

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
             EE   LF R Q   +  N+ T+ S+I  C    AL  GKQ+HA + + GF  ++  A+
Sbjct: 278 RLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALAT 337

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LVDMY KC  + +A  +F   + ++V++W  M+S +++     +   LF++M+ +G+ P
Sbjct: 338 ALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRP 397

Query: 336 NEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            + T +S+LS C+  G ++ GK   SY D    +  V  +    + ++D+  + G I+ A
Sbjct: 398 TKVTIVSLLSLCAVAGALDLGKWVHSYID----KERVEVDCILNTALVDMYAKCGDINAA 453

Query: 393 YDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDN 438
             L +         MW +++   +   Y    L   A  +  G++P++
Sbjct: 454 GRLFIE-AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPND 500



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 150/290 (51%), Gaps = 22/290 (7%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           F   SVL AC         K++H F LK  +DR+VFVG AL+ +Y +C  +  A  VF+ 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           M ER+ V+WS+M+    +N+ ++ AL L R    + +  ++  + S++   A  A +  G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 256 KQVHAVLCKTGFGSNMFAASS--LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           K +HA + +     +M   ++  L+DMYAKCG +  A  +F+G+ +K VV W  MI+G  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           R  R  E   LF +MQ+  + PNE T +S++  C   G ++ GK           +L N 
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQL------HAYILRNG 328

Query: 374 FHYS-----CMIDILGRAGLIHEAYDLILNMPFDATAS----MWGSLLAS 414
           F  S      ++D+ G+   I  A  L     FD+T +    +W ++L++
Sbjct: 329 FSVSLALATALVDMYGKCSDIRNARAL-----FDSTQNRDVMIWTAMLSA 373



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + +  C    A   GK  HA I+  G +     +  L++ Y KC  I  AR +FD  
Sbjct: 300 TMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDST 359

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++ W  ++ +Y       +A  LF  M   G  P ++ T+ S+L  CA    +   
Sbjct: 360 QNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRP-TKVTIVSLLSLCAVAGALDLG 418

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H +  K  ++ +  + TAL+D+YAKCG I+ A R+F     R+   W++++ GF  +
Sbjct: 419 KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH 478

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
              EEAL +F   +  G++ N  T   ++ AC+    + +GK++   +  T G    +  
Sbjct: 479 GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEH 538

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRH 315
              +VD+  + G + +A+ +   +  K N ++W  +++    H
Sbjct: 539 YGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 8/191 (4%)

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            F   SV+ AC  ++    GK++H  + K G   ++F  ++L+ MY +C CV  A  VF 
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            + E++VV W+TMI   SR+      + L  +M    + P+E   +S+++  +    +  
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 356 GKSYFDLMVK----QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           GK+    +++    +H  +P     + ++D+  + G +  A  L  N     T   W ++
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTT---TALLDMYAKCGHLGLARQL-FNGLTQKTVVSWTAM 269

Query: 412 LASCRNYRNLE 422
           +A C     LE
Sbjct: 270 IAGCIRSNRLE 280


>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Brachypodium distachyon]
          Length = 595

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/572 (40%), Positives = 336/572 (58%), Gaps = 20/572 (3%)

Query: 47  RAPVRGKVCHAKIIGMG-----LNNDTLTSNILINFYSKCGLISGARKVF-DEMPQRCIV 100
           RA  +G+  H  ++  G      ++  L S+ L+ FY++C L     + F D        
Sbjct: 26  RALPKGQQLHGFLLKGGHLPAIASSHALLSHHLLTFYARCALPELCLRAFLDLPAPPPAA 85

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK----Q 156
           +W+++I S+  NG    A   F  ML  G  P ++ ++ S   A AA  D          
Sbjct: 86  AWSSLISSFAQNGLPAAAFDAFRRMLAAG-VPATDRSIPSAAKAVAAAADSLRPPLAPHA 144

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           LH  A K     +VFVG+A+LD+YAKCG + DA R+F+ MPERN V+WS+++ G+    +
Sbjct: 145 LHGLASKTPFAEDVFVGSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGYADAGM 204

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           +  AL +FR A    +E N FT+S ++  CA       G QVHA   KT   ++ F  SS
Sbjct: 205 HPAALWIFRSALEEAVEVNDFTVSCIVRVCATATLFDLGAQVHARSIKTALDASPFVGSS 264

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           LV +Y+KCG V  AY +FS   E+N+ +WN +++  ++H  +      F +MQ  G  PN
Sbjct: 265 LVSLYSKCGLVDRAYRIFSAAPERNLGIWNAVLNASAQHGHTATAFERFMEMQNDGFRPN 324

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
             T++ +L+ACSH G+V++GK YF LM K++ + P   HY+ M+D+LGR G I EA +LI
Sbjct: 325 YITFLCLLTACSHAGLVDEGKRYFSLM-KEYTIEPQAEHYAAMVDLLGRVGRITEALELI 383

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
            +MP +   S+WG+LL +CR +++ + A IAAK+LF     ++G H+LLS+ YAA  R  
Sbjct: 384 ESMPMEPPESVWGALLMACRMFKDADTAAIAAKRLFQTGSRSSGAHMLLSSTYAAAGRHV 443

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLG 508
           + A ARK +RD+ V+KE   SW+E  G+        R HPR  EIY+ LEK+ E+M+  G
Sbjct: 444 DAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSDEIYNVLEKVGEKMEGAG 503

Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
           Y  +T   + DV    K E L +HSE+LA+  GL+ +  GVPIR+MKNLR+C DCH+ +K
Sbjct: 504 YVADTSAVVKDVAREEKCETLGYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAIK 563

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + S+  GR  I+RD  RFH F +G CSC DFW
Sbjct: 564 YLSKCTGRVVILRDNRRFHRFEDGLCSCGDFW 595


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 346/595 (58%), Gaps = 37/595 (6%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
           +CA+  A  + ++    I       D +    +I+ Y+KCG +  AR++FD M ++ ++S
Sbjct: 268 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 327

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           W+ +I +Y  +G+ ++A+ LF  ML  G  P  + T++S+L AC   R++ + +Q+H  A
Sbjct: 328 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLP-DKITLASLLYACINCRNLTQVRQVHAQA 386

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY---- 217
               M +N+ V   L+  Y+    + DA  +F+ M  R+ V+WS MV GF +   Y    
Sbjct: 387 SVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCF 446

Query: 218 ------------------------EEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
                                    E+L+LF + +  G+  ++  + +V+ ACA L A+ 
Sbjct: 447 GTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMH 506

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           + + +   + +  F  ++   ++++DM+AKCGCV  A  +F  +EEKNV+ W+ MI+ + 
Sbjct: 507 KARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 566

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H +  + + LF  M ++G+ PN+ T +S+L ACSH G+VE+G  +F LM + ++V  +V
Sbjct: 567 YHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADV 626

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY+C++D+LGRAG + EA  LI +M  +    +WG+ L +CR ++++ LAE AA  L  
Sbjct: 627 KHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLE 686

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKR 485
           ++P N G+++LLSNIYA   RWE+VA+ R L+    +KK    +W+E+         G  
Sbjct: 687 LQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDT 746

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
            HPR  EIY  L+ L  +++ +GY P+T   LHDV++  K  +L  HSEKLA+ FGL+  
Sbjct: 747 THPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIAT 806

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
               PIRI+KNLR+CGDCH+F K  S I GR  IVRD NRFHHF  G+CSC D+W
Sbjct: 807 PEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 191/369 (51%), Gaps = 31/369 (8%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L++ Y KC  I  AR +FD+M +R +V+W  +IG Y   G+  E++ LF  M  EG  P 
Sbjct: 199 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP- 257

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
            +  + +V+ ACA    + + + +  +  +     +V +GTA++D+YAKCG +  A  +F
Sbjct: 258 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 317

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + M E+N ++WS+M+A +  +    +AL LFR     G+  ++ T++S++ AC     L 
Sbjct: 318 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLT 377

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           Q +QVHA     G   N+  A+ LV  Y+    + DAY +F G+  ++ V W+ M+ GF+
Sbjct: 378 QVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA 437

Query: 314 RHARSV----------------------------EVMILFEKMQQAGLHPNEQTYISVLS 345
           +    +                            E ++LF+KM++ G+ P++   ++V+ 
Sbjct: 438 KVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVF 497

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           AC+ +G + K ++  D + ++   L +V   + MID+  + G +  A ++   M      
Sbjct: 498 ACAKLGAMHKARTIDDYIQRKKFQL-DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVI 556

Query: 406 SMWGSLLAS 414
           S W +++A+
Sbjct: 557 S-WSAMIAA 564



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 154/292 (52%), Gaps = 22/292 (7%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+    G+  + + +N LI FYS    +  A  +FD M  R  VSW+ ++G +   G  
Sbjct: 101 HAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY 160

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
                 F  ++R G  P   +T+  V+ AC   RD+   K L +               A
Sbjct: 161 INCFGTFRELIRCGARP-DNYTLPFVIRAC---RDL---KNLQM---------------A 198

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D+Y KC  I DA  +F+ M ER+ VTW+ M+ G+ +     E+L+LF + +  G+  +
Sbjct: 199 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 258

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           +  + +V+ ACA L A+ + + +   + +  F  ++   ++++DMYAKCGCV  A  +F 
Sbjct: 259 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 318

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            +EEKNV+ W+ MI+ +  H +  + + LF  M  +G+ P++ T  S+L AC
Sbjct: 319 RMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 130/266 (48%), Gaps = 23/266 (8%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           R++ + +Q+H  A    M  N+ V   L+  Y+    + DA  +F+ M  R+ V+WS MV
Sbjct: 92  RNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 151

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            GF +   Y      FR     G   + +T+  VI AC  L  L                
Sbjct: 152 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNL---------------- 195

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
                  +LVDMY KC  + DA F+F  ++E+++V W  MI G++   ++ E ++LFEKM
Sbjct: 196 -----QMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 250

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           ++ G+ P++   ++V+ AC+ +G + K +   D  +++     +V   + MID+  + G 
Sbjct: 251 REEGVVPDKVAMVTVVFACAKLGAMHKAR-IIDDYIQRKKFQLDVILGTAMIDMYAKCGC 309

Query: 389 IHEAYDLILNMPFDATASMWGSLLAS 414
           +  A ++   M      S W +++A+
Sbjct: 310 VESAREIFDRMEEKNVIS-WSAMIAA 334



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 169/365 (46%), Gaps = 38/365 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +C   R   + +  HA+    G+  + + +N L++FYS    +  A  +FD M
Sbjct: 362 TLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM 421

Query: 95  PQRCIVSWNTIIGSYTTNG---------RE-------------------QEAVALFINML 126
             R  VSW+ ++G +   G         RE                    E++ LF  M 
Sbjct: 422 CVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMR 481

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            EG  P  +  + +V+ ACA    + + + +  +  +     +V +GTA++D++AKCG +
Sbjct: 482 EEGVVP-DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 540

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  +F+ M E+N ++WS+M+A +  +    +AL LF      G+  N+ T+ S++ AC
Sbjct: 541 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 600

Query: 247 AGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVL 304
           +    + +G +  +++ +     +++   + +VD+  + G + +A   + S   EK+  L
Sbjct: 601 SHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 660

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT---YISVLSACSHIGMVEKGKSYFD 361
           W   +       R+ + ++L EK   + L    Q    YI + +  ++ G  E      D
Sbjct: 661 WGAFLGA----CRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRD 716

Query: 362 LMVKQ 366
           LM ++
Sbjct: 717 LMSQR 721


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/597 (40%), Positives = 361/597 (60%), Gaps = 16/597 (2%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF 77
           + A+   S   N T+  T +  + SC R+ +  +G   H  +I  G + D   +  LIN 
Sbjct: 64  NQALQVLSQEPNPTQ-HTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINM 122

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           YS+   I  ARKVFD+  +R I  WN +  + T  G  +E + L+  M R G  P   FT
Sbjct: 123 YSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIG-VPSDRFT 181

Query: 138 VSSVLCACAAKRD----VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
            + VL AC A       +   +++H   L+   + +V + T LLD+YA+ G + +ASRVF
Sbjct: 182 YTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVF 241

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV--LGLEYNQFTISSVICACAGLAA 251
           + MP +N V+WS+M+A + +N    EAL LFR+  +    L  N  T+ SV+ ACA LAA
Sbjct: 242 DQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAA 301

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L QGK +H  + + G  S +   S+LV +YA+CG +   + VF  +E+++VV WN++IS 
Sbjct: 302 LEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISS 361

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +  H    + + +F++M   GL P+  +++SVL ACSH G+VE+GK  F+ MV+ H + P
Sbjct: 362 YGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFP 421

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
           +V HY+CM+D+LGRA  + EA  +I +M  +    +WGSLL SCR + N+ELAE A  +L
Sbjct: 422 SVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRL 481

Query: 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK------- 484
           F +EP NAGN++LL++IYA  + W EV R + L+    ++K   +S +EI+ K       
Sbjct: 482 FELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSV 541

Query: 485 -RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM 543
              +P+I ++++ L KL  EMK+ GY P+T+  L+D++   K+ +++ HSEKLAL FGL+
Sbjct: 542 DEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLI 601

Query: 544 CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
               G  IRI KNLR+C DCHS  KF S+ A RE +VRD+NRFH F +G CSC D+W
Sbjct: 602 NSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 351/611 (57%), Gaps = 38/611 (6%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           +AN T + TL   L+  +       GK  H ++I +G  +  L  + L+  Y+  G IS 
Sbjct: 134 SANLTRV-TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISD 192

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM--------------------- 125
           A+KVF  +  R  V +N+++G     G  ++A+ LF  M                     
Sbjct: 193 AKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAK 252

Query: 126 -----LREGKT---PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
                 RE K       ++   SVL AC     + E KQ+H   ++     +++VG+AL+
Sbjct: 253 EAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALI 312

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           D+Y KC  +  A  VF+ M ++N V+W++MV G+ Q    EEA+ +F   Q  G++ + +
Sbjct: 313 DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHY 372

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T+   I ACA +++L +G Q H     +G    +  ++SLV +Y KCG + D+  +F+ +
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             ++ V W  M+S +++  R+VE + LF+KM Q GL P+  T   V+SACS  G+VEKG+
Sbjct: 433 NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ 492

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
            YF LM  ++ ++P++ HYSCMID+  R+G + EA   I  MPF   A  W +LL++CRN
Sbjct: 493 RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRN 552

Query: 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477
             NLE+ + AA+ L  ++P +   + LLS+IYA+  +W+ VA+ R+ +R+  VKKE  +S
Sbjct: 553 KGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQS 612

Query: 478 WVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL 529
           W++ KGK         + P + +IY+KLE+L  ++   GYKP+T    HDVE++ K ++L
Sbjct: 613 WIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKML 672

Query: 530 IHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHF 589
            +HSE+LA+ FGL+ +  G PIR+ KNLR+C DCH+  K  S + GRE +VRD  RFH F
Sbjct: 673 NYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRF 732

Query: 590 TNGSCSCWDFW 600
            +G+CSC DFW
Sbjct: 733 KDGTCSCGDFW 743



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 220/431 (51%), Gaps = 46/431 (10%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N L+  YSK GLIS     F+++P R  V+WN +I  Y+ +G    AV  +  M+R+   
Sbjct: 76  NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSA 135

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             +  T+ ++L   ++   V   KQ+H   +K   +  + VG+ LL +YA  G ISDA +
Sbjct: 136 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK 195

Query: 192 VFESMPERN------------------------------EVTWSSMVAGFVQNELYEEAL 221
           VF  + +RN                               V+W++M+ G  QN L +EA+
Sbjct: 196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAI 255

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
             FR  +V GL+ +Q+   SV+ AC GL A+ +GKQ+HA + +T F  +++  S+L+DMY
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
            KC C+  A  VF  +++KNVV W  M+ G+ +  R+ E + +F  MQ++G+ P+  T  
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY----SCMIDILGRAGLIHEAYDLIL 397
             +SAC+++  +E+G  +         +   + HY    + ++ + G+ G I ++  L  
Sbjct: 376 QAISACANVSSLEEGSQFHG-----KAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFN 430

Query: 398 NMPFDATASMWGSLLASCRNY-RNLELAEIAAKQL-FGMEPDNAGNHLLLSNIYAANRRW 455
            M      S W +++++   + R +E  ++  K +  G++PD     + L+ + +A  R 
Sbjct: 431 EMNVRDAVS-WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG----VTLTGVISACSRA 485

Query: 456 EEVARARKLIR 466
             V + ++  +
Sbjct: 486 GLVEKGQRYFK 496



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 141/306 (46%), Gaps = 41/306 (13%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-A 227
           N+F    LL  Y+K GLIS+    FE +P+R+ VTW+ ++ G+  + L   A+  +    
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +       + T+ +++   +    +  GKQ+H  + K GF S +   S L+ MYA  GC+
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190

Query: 288 VDAYFVFSGIEEKNVVLWNT------------------------------MISGFSRHAR 317
            DA  VF G++++N V++N+                              MI G +++  
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGL 250

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           + E +  F +M+  GL  ++  + SVL AC  +G + +GK     +++  N   +++  S
Sbjct: 251 AKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGS 309

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-----QLF 432
            +ID+  +   +H A  +   M      S W +++     Y     AE A K     Q  
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVS-WTAMVV---GYGQTGRAEEAVKIFLDMQRS 365

Query: 433 GMEPDN 438
           G++PD+
Sbjct: 366 GIDPDH 371


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 333/576 (57%), Gaps = 11/576 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  C +    + G + H   I +GL  D    N LIN Y+K G +  A  +F++M
Sbjct: 242 TISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQM 301

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R IVSWN+++ ++  N +   A+ ++  M   G  P    T+ S+    A   +    
Sbjct: 302 KVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVP-DLLTLVSLASVAAELGNFLSS 360

Query: 155 KQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           + +H F  +      ++ +G A++D+YAK G I  A +VFE +P ++ ++W+S++ G+ Q
Sbjct: 361 RSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQ 420

Query: 214 NELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           N L  EA+ ++   +   G   NQ T  S++ A + L AL QG + H  L K     ++F
Sbjct: 421 NGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIF 480

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            ++ LVDMY KCG + DA  +F  +  ++ V WN +IS    H   ++ + LF++MQ  G
Sbjct: 481 VSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEG 540

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T++S+LSACSH G+V++G+  F LM + + + P++ HY CM+D+ GRAG + +A
Sbjct: 541 VKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKA 600

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           ++ + NMP     S+WG+LL +CR + N+EL    +  L  +E +N G ++LLSNIYA  
Sbjct: 601 FNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKL 660

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
             WE V   R L RD  +KK    S +E+         G + HP+  EIYS+L  L  +M
Sbjct: 661 GHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKM 720

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K +GY P+    L DVED  K+ +L  HSE+LA+ FG++   P   ++I KNLR+CGDCH
Sbjct: 721 KSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCH 780

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  KF S+I  RE IVRD NRFHHF +G CSC D+W
Sbjct: 781 NATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 216/400 (54%), Gaps = 9/400 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++ +G   D   +   I+FYS+ G +S A  +FD M  R I +WN +I  +  
Sbjct: 158 GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG+  EA+ +F  M R         T+SS+L  C    D+     +HV+A+K  ++ ++F
Sbjct: 218 NGKVAEALEVFDEM-RFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLF 276

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  AL+++YAK G +  A  +F  M  R+ V+W+S++A F QN+    AL ++ +   +G
Sbjct: 277 VCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIG 336

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA 290
           +  +  T+ S+    A L   +  + +H  + +   F  ++   ++++DMYAK G +  A
Sbjct: 337 VVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSA 396

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSH 349
             VF G+  K+V+ WN++I+G+S++  + E + ++  M+  +G  PN+ T++S+L+A S 
Sbjct: 397 RKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQ 456

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
           +G +++G      ++K   +  ++F  +C++D+ G+ G + +A  L   +P  ++ S W 
Sbjct: 457 LGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WN 514

Query: 410 SLLASCRNYRNLELAEI---AAKQLFGMEPDNAGNHLLLS 446
           +++ SC       L  +      Q  G++PD+     LLS
Sbjct: 515 AII-SCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLS 553



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 179/362 (49%), Gaps = 4/362 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            K  HA ++  G       S  LIN Y+  G I  AR  FD++  + + +WN++I +Y  
Sbjct: 59  AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYAR 118

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G    AV  F   L         +T   V+ AC    D    +++H   LK   + +V+
Sbjct: 119 IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVY 175

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +  + +  Y++ G +S A  +F++M  R+  TW++M++GF  N    EAL +F   +   
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  +  TISS++  C  L  +I G  +H    K G   ++F  ++L++MYAK G +  A 
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F+ ++ +++V WN++++ F ++ + V  + ++ KM   G+ P+  T +S+ S  + +G
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG 355

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
                +S    + ++   L ++   + +ID+  + G I  A  +   +P     S W SL
Sbjct: 356 NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVIS-WNSL 414

Query: 412 LA 413
           + 
Sbjct: 415 IT 416


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/535 (38%), Positives = 328/535 (61%), Gaps = 12/535 (2%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
            I+ YSKCG I  A  +F E  +  IV++N +I  YT+NG  + +++LF  ++  G    
Sbjct: 262 FISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG---- 317

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           ++   S+++        +     +H ++LK+    +  V TAL  VY+K   I  A ++F
Sbjct: 318 AKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLF 377

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           +  PE++  +W++M++G+ QN L E+A+ LFR  Q      N  TI+ ++ ACA L AL 
Sbjct: 378 DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALS 437

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            GK VH ++  T F S+++ +++L+ MYAKCG + +A  +F  + +KN V WNTMISG+ 
Sbjct: 438 LGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYG 497

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H    E + +F +M  +G+ P   T++ VL ACSH G+V++G   F+ M+ ++   P+V
Sbjct: 498 LHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSV 557

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY+C++DILGRAG +  A   I  MP     S+W +LL +CR +++  LA   +++LF 
Sbjct: 558 KHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFE 617

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKR 485
           ++PDN G H+LLSNI++A+R + + A  R+  +  ++ K    + +EI         G +
Sbjct: 618 LDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQ 677

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
           +HP++  I+ KLEKL  +M++ GY+PETE  LHDVE+  ++ ++  HSE+LA+ FGL+  
Sbjct: 678 SHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIAT 737

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG  IRI+KNLR+C DCH+  K  S+I  R  +VRD NRFHHF +G CSC D+W
Sbjct: 738 EPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 178/349 (51%), Gaps = 4/349 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G V H + I  G +++ L  + ++  Y K   +  ARKVFD MP++  + WNT+I  Y  
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    E++ +F +++ E  T     T+  +L A A  +++    Q+H  A K     + +
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V T  + +Y+KCG I  AS +F      + V +++M+ G+  N   E +L LF+   + G
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            +    T+ S++   +G   LI    +H    K+ F S+   +++L  +Y+K   +  A 
Sbjct: 318 AKLKSSTLVSLV-PVSGHLMLIYA--IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESAR 374

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F    EK++  WN MISG++++  + + + LF +MQ +   PN  T   +LSAC+ +G
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG 434

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            +  GK   DL V+  +   +++  + +I +  + G I EA  L   MP
Sbjct: 435 ALSLGKWVHDL-VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP 482



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 150/299 (50%), Gaps = 1/299 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+I+  G  ND      L    S  G I  AR +F  + +  +  +N ++  ++ N   
Sbjct: 40  HAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             ++A+F ++ +      +  T +  + A +  RD      +H  A+    D  + +G+ 
Sbjct: 100 HSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSN 159

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEY 234
           ++ +Y K   + DA +VF+ MPE++ + W++M++G+ +NE+Y E++ +FR          
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           +  T+  ++ A A L  L  G Q+H++  KTG  S+ +  +  + +Y+KCG +  A  +F
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLF 279

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
                 ++V +N MI G++ +  +   + LF+++  +G      T +S++    H+ ++
Sbjct: 280 REFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI 338



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           Q HA +   GF +++   + L    +  G +  A  +F  ++  +V L+N ++ GFS + 
Sbjct: 38  QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 317 RSVEVMILFEKMQQA-GLHPNEQTYISVLSACS 348
                + +F  ++++  L PN  TY   +SA S
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS 130


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/582 (39%), Positives = 350/582 (60%), Gaps = 19/582 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    + +C      +R    H+     G ++     N L+ +YSK G++  A  VF+ M
Sbjct: 142 TFSGVITACCNHVGLIRQ--LHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGM 199

Query: 95  PQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            +  R  VSWN++I +Y  + R  +A+AL+ +M+  G      FT++SVL   +   D+ 
Sbjct: 200 GEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRG-FEIDMFTLASVLTTFSCVEDLS 258

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL-ISDASRVFESMPERNEVTWSSMVAGF 211
              Q H  A+K   ++N  VG+ L+D+YAKCG  +S++ +VFE +   + V W++M++G+
Sbjct: 259 GGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGY 318

Query: 212 VQN-ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            QN EL  EAL  FR+ Q  G   +  +    I AC+ L++  QGKQ HA+  K+   SN
Sbjct: 319 SQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSN 378

Query: 271 MFAAS-SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
             + + +LV MY+KCG + DA  +F  + + N V  N++I+G+++H    E + LFE+M 
Sbjct: 379 QISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQML 438

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            A + P   T +S+LSAC+H G VE+GK YF++M     + P   HYSCMID+LGRAG +
Sbjct: 439 AASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKL 498

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            EA  LI  MPF   ++ W +LL +CR Y N+ELAE AA Q   +EP NA  +++L+++Y
Sbjct: 499 SEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMY 558

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLV 501
           +A R+WEE AR RKL+RD  ++K+   SW+E+  +         +HPRI EI+  L+++ 
Sbjct: 559 SAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMF 618

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQE---LLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
            +MK+ GY P+        +++ +QE   +L HHSEKLA+ FGL+    G P+ ++KNLR
Sbjct: 619 VKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLR 678

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ICGDCH+ +KF S IA R+  VRD  RFH F +G CSC D+W
Sbjct: 679 ICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/410 (31%), Positives = 205/410 (50%), Gaps = 38/410 (9%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK--- 89
           L + +  L+SC   +  + GK  H   +   + + T  SN  I  YSKC L++ A     
Sbjct: 8   LQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFN 67

Query: 90  ----------------------------VFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                                       +FD++PQ  +VS+NT+I +Y   G    A++L
Sbjct: 68  QTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSL 127

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M RE       FT S V+ AC     V   +QLH  A  +  D  V V  +LL  Y+
Sbjct: 128 FGEM-REMGLVMDGFTFSGVITACC--NHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYS 184

Query: 182 KCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           K G++ +A  VF  M E  R+EV+W+SM+  + Q++   +AL L+R     G E + FT+
Sbjct: 185 KNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTL 244

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC-VVDAYFVFSGIE 298
           +SV+   + +  L  G Q HA   KTGF  N    S L+DMYAKCG  + ++  VF  I 
Sbjct: 245 ASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEIC 304

Query: 299 EKNVVLWNTMISGFSRHAR-SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             ++V+WNTMISG+S++   SVE +  F +MQ+AG  P++ +++  +SACS++    +GK
Sbjct: 305 GSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGK 364

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
            +  L +K       +   + ++ +  + G + +A  L   MP   T ++
Sbjct: 365 QFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTL 414



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 92/190 (48%), Gaps = 6/190 (3%)

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           +   ++ +C     L+ GK +H +  K+   S+ + ++  + +Y+KC  +  A+  F+  
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            E NV  +N +I+ +++ +       LF+++ Q    P+  ++ ++++A +  G      
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQ----PDLVSFNTLINAYADRGDTLSAL 125

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDIL-GRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
           S F  M ++  ++ + F +S +I       GLI + + L  +  FD+  S+  SLL    
Sbjct: 126 SLFGEM-REMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYS 184

Query: 417 NYRNLELAEI 426
               LE AE+
Sbjct: 185 KNGILEEAEM 194


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 352/615 (57%), Gaps = 49/615 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGL-----NNDTLTSNILINFYSKCGLISGAR 88
           S++   L S   +RA   G  C A +    L       D LT   +I  Y +   ++GAR
Sbjct: 184 SSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           +VF+ M +    +WN +I  Y   G  QEA+ L   M   G   + + T ++++ ACA  
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG-IQFDDITYTTIISACANV 302

Query: 149 RDVFECKQLHVFALKAAMDRN----VFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
                 KQ+H + LK  ++ N    + V  AL+ +Y K   + +A ++F +MP RN +TW
Sbjct: 303 GSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITW 362

Query: 205 SSMVAGFV-------------------------------QNELYEEALILFRRAQVLGLE 233
           +++++G+V                               QN   +E L LF++ ++ G E
Sbjct: 363 NAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE 422

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
              F  +  + AC+ L AL  G+Q+HA L   G+ S++   ++++ MYAKCG V  A  V
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +   ++V WN+MI+   +H   V+ + LF++M + G+ P+  T+++VL+ACSH G+V
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           EKG+ YF+ M++ + + P   HY+ M+D+  RAG+   A  +I +MP    A +W +LLA
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
            CR + N++L   AA+QLF + P N G ++LLSNIYA   RW EVA+ RKL+RD  V+KE
Sbjct: 603 GCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKE 662

Query: 474 KSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
            + SW+E++ K +        HP +  +Y  LE+L  EMKKLGY P+T+  LHD+E  +K
Sbjct: 663 PACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQK 722

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           +  L  HSEKLA+ FG+M L PG  +R+ KN+RICGDCH+  KF S++A RE IVRD  R
Sbjct: 723 EHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKR 782

Query: 586 FHHFTNGSCSCWDFW 600
           FHHF NG CSC D+W
Sbjct: 783 FHHFKNGDCSCRDYW 797



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 205/455 (45%), Gaps = 87/455 (19%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALF 122
           N D +    LI  Y   G +   R++F+  P   R  V +N +I  Y  NG    A+ LF
Sbjct: 76  NPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELF 135

Query: 123 INMLREGKTPYSEFTVSSVLCACAA-KRDVFECKQLHVFALKAAMD-RNVFVGTALLDVY 180
             M R+   P  +FT +SVL A      +  +C Q+H   +K  M   +  V  ALL VY
Sbjct: 136 RAMRRDDFRP-DDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVY 194

Query: 181 AK--------CGLISDASRVFESMPERNEVTWSSMVAGFVQNE----------------- 215
            K        C  +  A ++F+ MP+R+E+TW++M+ G+V+N+                 
Sbjct: 195 VKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG 254

Query: 216 --------------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
                          ++EAL L R+ + LG++++  T +++I ACA + +   GKQVHA 
Sbjct: 255 AAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAY 314

Query: 262 LCKTGFGSN----MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           + K     N    +  +++L+ +Y K   V +A  +F  +  +N++ WN ++SG+    R
Sbjct: 315 ILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 318 -----------------SVEVMI--------------LFEKMQQAGLHPNEQTYISVLSA 346
                            ++ VMI              LF++M+  G  P +  +   L+A
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CS +G +E G+     +V       ++   + MI +  + G++  A  + + MP     S
Sbjct: 435 CSVLGALENGRQLHAQLV-HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVS 493

Query: 407 MWGSLLASCRNY----RNLELAEIAAKQLFGMEPD 437
            W S++A+   +    + +EL +   K+  G+ PD
Sbjct: 494 -WNSMIAALGQHGHGVKAIELFDQMLKE--GVFPD 525



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 134/330 (40%), Gaps = 84/330 (25%)

Query: 176 LLDVYAKCGLISDASRVFESMPE---------------------------------RNEV 202
           LL++Y K   +  A ++FE +P                                  R+ V
Sbjct: 54  LLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAV 261
            +++M+ G+  N     AL LFR  +      + FT +SV+ A        Q   Q+H  
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 262 LCKTGFGS-NMFAASSLVDMYAK--------CGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
           + KTG G  +    ++L+ +Y K        C  +V A  +F  + +++ + W TMI+G+
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 313 SRH-----ARSV--------------------------EVMILFEKMQQAGLHPNEQTYI 341
            R+     AR V                          E + L  KM+  G+  ++ TY 
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC------MIDILGRAGLIHEAYDL 395
           +++SAC+++G  + GK     ++K + + PN  H  C      +I +  +   + EA  +
Sbjct: 294 TIISACANVGSFQMGKQVHAYILK-NELNPN--HSFCLSVSNALITLYCKNNKVDEARKI 350

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAE 425
              MP     + W ++L+   N   +E A+
Sbjct: 351 FYAMPVRNIIT-WNAILSGYVNAGRMEEAK 379


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 333/571 (58%), Gaps = 13/571 (2%)

Query: 40  LQSCARERAPVRGKVCHAKII--GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           LQ CA  +  +  K  HA  I  G+ LNN  +  +++    S    +S A  VF  +   
Sbjct: 24  LQFCASSKHKL--KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNP 81

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + +WNTII  Y  +     A   +  M+     P +  T   +L A +   +V E + +
Sbjct: 82  NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTH-TYPFLLKAISKSLNVREGEAI 140

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   ++   +  VFV  +LL +YA CG    A +VFE M ER+ V W+SM+ GF  N   
Sbjct: 141 HSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRP 200

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EAL LFR   V G+E + FT+ S++ A A L AL  G++VH  L K G   N    +SL
Sbjct: 201 NEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSL 260

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +D+YAKCG + +A  VFS + E+N V W ++I G + +    E + LF++M+  GL P+E
Sbjct: 261 LDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSE 320

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VL ACSH GM+++G  YF  M ++  ++P + HY CM+D+L RAGL+ +AY+ I 
Sbjct: 321 ITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQ 380

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           NMP    A +W +LL +C  + +L L EIA   L  +EP ++G+++LLSN+YA+ RRW +
Sbjct: 381 NMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSD 440

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           V   R+ +    VKK    S VE+         G R+HP+  ++Y+ LEK+ E +K  GY
Sbjct: 441 VQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGY 500

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P T + L D+E+  K++ L +HSEK+A+ F L+   PG PIR+MKNLR+C DCH  +K 
Sbjct: 501 VPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKL 560

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            ++I  RE ++RD +RFHHF  GSCSC D+W
Sbjct: 561 IAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 41/207 (19%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           F+  ++ SASA   A EL                  G+  H  ++ +GL+ ++  +N L+
Sbjct: 220 FTVVSLLSASAELGALEL------------------GRRVHVYLLKVGLSKNSHVTNSLL 261

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           + Y+KCG I  A++VF EM +R  VSW ++I     NG  +EA+ LF  M  +G  P SE
Sbjct: 262 DLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVP-SE 320

Query: 136 FTVSSVLCACAA-----------KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
            T   VL AC+            +R   EC           + R    G  ++D+ ++ G
Sbjct: 321 ITFVGVLYACSHCGMLDEGFEYFRRMKEEC---------GIIPRIEHYG-CMVDLLSRAG 370

Query: 185 LISDASRVFESMP-ERNEVTWSSMVAG 210
           L+  A    ++MP + N V W +++  
Sbjct: 371 LVKQAYEYIQNMPVQPNAVIWRTLLGA 397


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/535 (38%), Positives = 328/535 (61%), Gaps = 12/535 (2%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
            I+ YSKCG I     +F E  +  IV++N +I  YT+NG  + +++LF  ++  G    
Sbjct: 262 FISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG---- 317

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           +    S+++        +     +H + LK+    +  V TAL  VY+K   I  A ++F
Sbjct: 318 ARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLF 377

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           +  PE++  +W++M++G+ QN L E+A+ LFR  Q      N  TI+ ++ ACA L AL 
Sbjct: 378 DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALS 437

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            GK VH ++  T F S+++ +++L+ MYAKCG + +A  +F  + +KN V WNTMISG+ 
Sbjct: 438 LGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYG 497

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H +  E + +F +M  +G+ P   T++ VL ACSH G+V++G   F+ M+ ++   P+V
Sbjct: 498 LHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSV 557

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY+CM+DILGRAG +  A   I  M  +  +S+W +LL +CR +++  LA   +++LF 
Sbjct: 558 KHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFE 617

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKR 485
           ++PDN G H+LLSNI++A+R + + A  R+  +  ++ K    + +EI         G +
Sbjct: 618 LDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQ 677

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
           +HP++ EIY KLEKL  +M++ GY+PETE  LHDVE+  ++ ++  HSE+LA+ FGL+  
Sbjct: 678 SHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIAT 737

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG  IRI+KNLR+C DCH+  K  S+I  R  +VRD NRFHHF +G CSC D+W
Sbjct: 738 EPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 180/348 (51%), Gaps = 7/348 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+V H + +  G +++ L  + ++  Y K   +  ARKVFD MP++  + WNT+I  Y  
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    E++ +F +++ E  T     T+  +L A A  +++    Q+H  A K     + +
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V T  + +Y+KCG I   S +F    + + V +++M+ G+  N   E +L LF+   + G
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
                 T+ S++   +G   LI    +H    K+ F S+   +++L  +Y+K   +  A 
Sbjct: 318 ARLRSSTLVSLV-PVSGHLMLIYA--IHGYCLKSNFLSHASVSTALTTVYSKLNEIESAR 374

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F    EK++  WN MISG++++  + + + LF +MQ++   PN  T   +LSAC+ +G
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLG 434

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA---YDLI 396
            +  GK   DL V+  +   +++  + +I +  + G I EA   +DL+
Sbjct: 435 ALSLGKWVHDL-VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM 481



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 151/299 (50%), Gaps = 1/299 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+II  G  ND      L    S  G I  AR +F  + +  +  +N ++  ++ N   
Sbjct: 40  HAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             ++++F ++ +      +  T +  + A +  RD    + +H  A+    D  + +G+ 
Sbjct: 100 HSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSN 159

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEY 234
           ++ +Y K   + DA +VF+ MPE++ + W++M++G+ +NE+Y E++ +FR          
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           +  T+  ++ A A L  L  G Q+H++  KTG  S+ +  +  + +Y+KCG +     +F
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALF 279

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
               + ++V +N MI G++ +  +   + LF+++  +G      T +S++    H+ ++
Sbjct: 280 REFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           Q HA +   GF +++   + L    +  G +  A  +F  ++  +V L+N ++ GFS + 
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 317 RSVEVMILFEKMQQA-GLHPNEQTYISVLSACS 348
                + +F  ++++  L PN  TY   +SA S
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAAS 130


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 331/542 (61%), Gaps = 9/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D    N +++ Y + G +    ++F+EMP R ++SW ++IG    NG+ +EA+ +F  ML
Sbjct: 135 DVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKML 194

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R G  P +  T + VL ACA   +     Q+H   +K     + F+  +L+  YA C  I
Sbjct: 195 RSGVEP-TWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKI 253

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A ++F     +N V W++++  +V N  +++AL +F     +G   NQ T S  + AC
Sbjct: 254 EHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKAC 313

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
            GL AL +GK++H +  K G  +++F  +SLV MY +CG V  A  VF  I EK++V WN
Sbjct: 314 CGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWN 373

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I G ++H   +  +I F +M + G+ PNE T+  +LSACS  GM+ KG+ +F+ + + 
Sbjct: 374 SIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRY 433

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
            + +    HY+CM+DILGR G + EA +L+  MP  A + +W +LL++CR + NLE+AE 
Sbjct: 434 KSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAER 493

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-- 484
           AAK +  +EP+ +  ++LLSNIYA+  RW +V+R R  ++   + K+   SWV ++GK  
Sbjct: 494 AAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKH 553

Query: 485 ------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                 R+HP    IY KL+ L +++K+ GY P+ +  LHDVED +K+E+L  HSE+LA+
Sbjct: 554 EFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAI 613

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGL+    G  I +MKNLR+CGDCHS +K  S+I GR+ +VRD  RFHHF NG CSC D
Sbjct: 614 AFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSD 673

Query: 599 FW 600
           +W
Sbjct: 674 YW 675



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 174/382 (45%), Gaps = 44/382 (11%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I     CG +  A ++FDEMP++ ++SW T++  Y   GR + A  LF++M 
Sbjct: 73  DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDM- 131

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                                          HV        ++V    A++  Y + G +
Sbjct: 132 -------------------------------HV--------KDVAAWNAMVHGYFENGRV 152

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +  R+FE MP R+ ++W+SM+ G   N   EEAL +F++    G+E    T + V+ AC
Sbjct: 153 EEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSAC 212

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A       G QVH  + K G   + F + SL+  YA C  +  A+ +F+    KNVV W 
Sbjct: 213 ANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWT 272

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            +++ +  + +  + + +F  M + G  PN+ T+   L AC  +  ++KGK    + +K 
Sbjct: 273 ALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKL 332

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             +  +VF  + ++ +    G ++ A  +  N+      S W S++     +     A I
Sbjct: 333 -GLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVS-WNSIIVGSAQHGFGLWALI 390

Query: 427 AAKQLF--GMEPDNAGNHLLLS 446
              Q+   G++P+      LLS
Sbjct: 391 FFNQMIRRGVDPNEITFTGLLS 412



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 149/287 (51%), Gaps = 7/287 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    L +CA       G   H  ++ +G       S  LI FY+ C  I  A K+F+E
Sbjct: 203 STFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNE 262

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              + +V W  ++ +Y  N + Q+A+ +F +M + G  P ++ T S  L AC     + +
Sbjct: 263 TLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALP-NQSTFSITLKACCGLEALDK 321

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K++H  A+K  ++ +VFVG +L+ +Y +CG ++ A  VF ++ E++ V+W+S++ G  Q
Sbjct: 322 GKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQ 381

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +     ALI F +    G++ N+ T + ++ AC+    L++G+     + +  + SN+  
Sbjct: 382 HGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISR--YKSNVLR 439

Query: 274 A---SSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
               + +VD+  +CG + +A  +   +  K N ++W  ++S    H+
Sbjct: 440 PQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHS 486



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 23/187 (12%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVIC 244
           +  A  +F+ +P  N   ++ M+AG+ +N+   +AL LF R  V   + +N      + C
Sbjct: 28  LDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDC 87

Query: 245 ACAGLAA-LIQGKQVHAVLCKTG-------FGSNMFAASSLVDMYAK----CGCVVDAYF 292
              G+A  L        V+  T        FG    A    +DM+ K       +V  YF
Sbjct: 88  GNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYF 147

Query: 293 VFSGIEE----------KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
               +EE          ++V+ W +MI G   + +S E + +F+KM ++G+ P   T+  
Sbjct: 148 ENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFAC 207

Query: 343 VLSACSH 349
           VLSAC++
Sbjct: 208 VLSACAN 214


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/600 (37%), Positives = 350/600 (58%), Gaps = 40/600 (6%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA------------ 87
           LQ+C   ++   GK  H+ I   G ++D   SN L+N YSK G +  A            
Sbjct: 76  LQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNI 135

Query: 88  -------------------RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
                              + +FDEMP R + +WN ++   T     +EA+ LF  M   
Sbjct: 136 MSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNEL 195

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
              P  E+++ SVL  CA    +   +Q+H + +K   + N+ VG +L  +Y K G + D
Sbjct: 196 SFMP-DEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHD 254

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
             RV   MP+ + V W+++++G  Q   +E  L  +   ++ G   ++ T  SVI +C+ 
Sbjct: 255 GERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSE 314

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LA L QGKQ+HA   K G  S +   SSLV MY++CGC+ D+   F   +E++VVLW++M
Sbjct: 315 LAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSM 374

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+ +  H +  E + LF +M+Q  L  NE T++S+L ACSH G+ +KG   FD+MVK++ 
Sbjct: 375 IAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYG 434

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           +   + HY+C++D+LGR+G + EA  +I +MP  A A +W +LL++C+ ++N E+A   A
Sbjct: 435 LKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVA 494

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------ 482
            ++  ++P ++ +++LL+NIY++  RW+ V+  R+ ++D  VKKE   SWVE+K      
Sbjct: 495 DEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQF 554

Query: 483 --GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
             G   HP+  EI   LE+L  E+K+ GY P+T   LHD+++  K+++L HHSEKLA+ F
Sbjct: 555 HMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAF 614

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            LM    GVPIR+MKNLR+C DCH  +K+ S I   E IVRD +RFHHF NG+CSC D+W
Sbjct: 615 ALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L + L+ CA   A + G+  HA ++  G   + +    L + Y K G +    +V + M
Sbjct: 203 SLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWM 262

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P   +V+WNT++      G  +  +  +  M   G  P  + T  SV+ +C+    + + 
Sbjct: 263 PDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRP-DKITFVSVISSCSELAILCQG 321

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H  A+KA     V V ++L+ +Y++CG + D+ + F    ER+ V WSSM+A +  +
Sbjct: 322 KQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFH 381

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
              EEA+ LF   +   L  N+ T  S++ AC+      +G  +  ++ K  G  + +  
Sbjct: 382 GQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQH 441

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRH 315
            + LVD+  + GC+ +A  +   +  K + ++W T++S    H
Sbjct: 442 YTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIH 484



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 109/231 (47%), Gaps = 35/231 (15%)

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK---------------- 283
           S+++ AC  L ++  GKQ+H+++  +G  S+ F ++ L+++Y+K                
Sbjct: 73  SNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPR 132

Query: 284 -----CGCVVDAYF----------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
                C  ++ AY           +F  + ++NV  WN M++G ++   + E ++LF +M
Sbjct: 133 RNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRM 192

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
            +    P+E +  SVL  C+H+G +  G+     ++K      N+     +  +  +AG 
Sbjct: 193 NELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKC-GFECNLVVGCSLAHMYMKAGS 251

Query: 389 IHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPD 437
           +H+   +I  MP D +   W +L++  + + Y    L +    ++ G  PD
Sbjct: 252 MHDGERVINWMP-DCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPD 301


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/586 (38%), Positives = 331/586 (56%), Gaps = 52/586 (8%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K++    + D LT   ++  Y + G ++ AR VF+E+  +  V WN +I  Y  +G   +
Sbjct: 222 KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCAD 281

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV--------FALKAAMDRN 169
           A  LF  M+ E K P  EFT +SVL ACA        K +H         F  +AA+  N
Sbjct: 282 AFELFRRMVSE-KVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 340

Query: 170 VFVGTALLDVYAKCGLISDASRVFESM-------------------------------PE 198
                AL+ +Y+K G I  A R+F++M                               P 
Sbjct: 341 ----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 396

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +N+++W  MV+G+V   L E+AL LF + +   ++   +T +  I AC  L AL  G+Q+
Sbjct: 397 KNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQL 456

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA L + GF ++  A ++L+ MYAKCG V DA  VF  +   + V WN MIS   +H   
Sbjct: 457 HAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHG 516

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E + LF++M   G+ P+  +++++L+AC+H G+V++G  YF+ M +   + P   HY+ 
Sbjct: 517 REALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYAR 576

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           +ID+LGR+G I EA DLI  MPF+ T S+W ++L+ CR   ++E    AA QLF M P +
Sbjct: 577 LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH 636

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRI 490
            G ++LLSN Y+A  RW + AR RKL+RD  VKKE   SW+E+         G   HP  
Sbjct: 637 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEA 696

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
            E+Y  LE +   M+KLGY P+T+  LHD+E   K+ +L  HSEKLA+ FGL+ L PG  
Sbjct: 697 QEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT 756

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           + ++KNLRICGDCH+ M F S+  GRE +VRD+ RFHHF +G CSC
Sbjct: 757 VTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 175/384 (45%), Gaps = 50/384 (13%)

Query: 74  LINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           L+   +  G +  A   FD +P  +R  V  N ++ ++        AV++F  +L  G  
Sbjct: 98  LVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSL 157

Query: 132 PYSEFTVSSVLCACAAKRDVF--ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS-- 187
              +++ ++++ A     ++    C QLH   LK+     + V  AL+ +Y KC      
Sbjct: 158 RPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEAS 217

Query: 188 -DASRVFESMPERNEVTWSSMV-------------------------------AGFVQNE 215
            DA +V + MP+++++TW++MV                               +G+VQ+ 
Sbjct: 218 WDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSG 277

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA- 274
           +  +A  LFRR     +  ++FT +SV+ ACA     + GK VH  + +        AA 
Sbjct: 278 MCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAAL 337

Query: 275 ---SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++LV +Y+K G +V A  +F  +  K+VV WNT++SG+       + + +F+ M   
Sbjct: 338 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP-- 395

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
             + N+ +++ ++S   H G+ E     F+ M +  +V P  + Y+  I   G  G +  
Sbjct: 396 --YKNDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYAGAIAACGELGALKH 452

Query: 392 AYDL---ILNMPFDATASMWGSLL 412
              L   ++   F+A+ S   +LL
Sbjct: 453 GRQLHAHLVQCGFEASNSAGNALL 476



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 149/376 (39%), Gaps = 80/376 (21%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----NDTLTSNILINFYSKCGLISGARKV 90
           T  + L +CA     V GK  H +II +  N         +N L+  YSK G I  A+++
Sbjct: 300 TFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRI 359

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALF---------------------------- 122
           FD M  + +VSWNTI+  Y  +G   +AV +F                            
Sbjct: 360 FDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDAL 419

Query: 123 --INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
              N +R       ++T +  + AC     +   +QLH   ++   + +   G ALL +Y
Sbjct: 420 KLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMY 479

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           AKCG ++DA  VF  MP  + V+W++M++   Q+    EAL LF +    G++ ++ +  
Sbjct: 480 AKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFL 539

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFG-----SNMFAASSLVDMYAKCGCVVDAYFVFS 295
           +++ AC            HA L   GF         F  S   D YA+            
Sbjct: 540 TILTACN-----------HAGLVDEGFHYFESMKRDFGISPGEDHYAR------------ 576

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
                       +I    R  R  E   L + M      P    + ++LS C   G +E 
Sbjct: 577 ------------LIDLLGRSGRIGEARDLIKTMP---FEPTPSIWEAILSGCRTNGDMEF 621

Query: 356 GKSYFDL---MVKQHN 368
           G    D    M+ QH+
Sbjct: 622 GAYAADQLFRMIPQHD 637


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 344/585 (58%), Gaps = 18/585 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKII----------GMGLNNDTLTSNILINFYSKCGL 83
           STL A L   A++ A  +G   HA  I             L +  L    L++ Y+KCG 
Sbjct: 114 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 173

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  AR+VFD MP R  V+W+ +IG +    R  +A  LF  ML +G    S  +++S L 
Sbjct: 174 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 233

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           ACA+   +   +QLH    K+ +  ++  G +LL +YAK GLI  A  +F+ M  ++ V+
Sbjct: 234 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           +S++V+G+VQN   EEA ++F++ Q   +E +  T+ S+I AC+ LAAL  G+  H  + 
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
             G  S     ++L+DMYAKCG +  +  VF+ +  +++V WNTMI+G+  H    E   
Sbjct: 354 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF +M   G  P+  T+I +LSACSH G+V +GK +F +M   + + P + HY CM+D+L
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 473

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + EAY+ I +MP  A   +W +LL +CR Y+N++L +  ++ +  + P+  GN +
Sbjct: 474 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLSNIY+A  R++E A  R + +    KK    SW+EI G         ++HP+  EIY 
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 593

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           +L+ ++  +KKLGY+P+T   L D+E+  K++ LI HSEKLA+ +G++ L     I + K
Sbjct: 594 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 653

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+CGDCH+ +K  S +  R  IVRD NRFHHF NG CSC DFW
Sbjct: 654 NLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 162/329 (49%), Gaps = 16/329 (4%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           MLR    P + +T    L AC+A  D    + +H  A+ A +  ++FV TALLD+Y KC 
Sbjct: 1   MLRHRVAP-NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA 59

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL--ILFRRAQVLGLEYNQFTISSV 242
            + DA+ +F +MP R+ V W++M+AG+  + +Y  A+  +L  + Q+  L  N  T+ ++
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSN----------MFAASSLVDMYAKCGCVVDAYF 292
           +   A   AL QG  VHA   +     N          +   ++L+DMYAKCG ++ A  
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHIG 351
           VF  +  +N V W+ +I GF   +R  +  +LF+ M   GL     T I S L AC+ + 
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLD 239

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  G+    L+ K   V  ++   + ++ +  +AGLI +A  L   M    T S    +
Sbjct: 240 HLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 412 LASCRNYRNLELAEIAAK-QLFGMEPDNA 439
               +N R  E   +  K Q   +EPD A
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAA 327



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + +T+ + + +C+   A   G+  H  +I  GL ++T   N LI+ Y+KCG I  +R+VF
Sbjct: 325 DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF 384

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + MP R IVSWNT+I  Y  +G  +EA ALF+ M   G  P    T   +L AC+    V
Sbjct: 385 NMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP-DGVTFICLLSACSHSGLV 443

Query: 152 FECKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K       H + L   M+  +     ++D+ ++ G + +A    +SMP R +V  W 
Sbjct: 444 IEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 499

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           +++      +  +    + R  Q LG E    F + S I + AG
Sbjct: 500 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 543


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 347/581 (59%), Gaps = 16/581 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCH--AKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           + +TL + L + A       G+  H  A+  G+  +   LT   LI+ YSKCG +  AR 
Sbjct: 211 DATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTG--LISLYSKCGDVESARC 268

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FD M +  +V++N +I  Y+ NG    +V LF  ++  G  P S   V+ +        
Sbjct: 269 LFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGH 328

Query: 150 DVF-ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           D+  +C  LH F LK+    N  V TA+  ++ +   +  A + F++MPE+   +W++M+
Sbjct: 329 DLLAQC--LHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMI 386

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           +G+ QN L E A+ LF +   L +  N  TISS + ACA L AL  GK +H ++ +    
Sbjct: 387 SGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLE 446

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            N++  ++L+DMYAKCG + +A  +F+ ++ KNVV WN MI+G+  H +  E + L++ M
Sbjct: 447 PNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDM 506

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
             A L P   T++SVL ACSH G+VE+G   F  M   + + P + H +CM+D+LGRAG 
Sbjct: 507 LDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQ 566

Query: 389 IHEAYDLILNMPFDATAS-MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
           + EA++LI   P  A    +WG+LL +C  +++ +LA++A+++LF ++P+N+G ++LLSN
Sbjct: 567 LKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSN 626

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEK 499
           ++ + +++ E A  R+  +  ++ K    + +EI         G R HP+   IYS LEK
Sbjct: 627 LHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEK 686

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           L  +M + GY+PETE  L+DVE+  K+ ++  HSEKLA+ FGL+   PG  IRI+KNLR+
Sbjct: 687 LTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRV 746

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCH+  KF S++  R  +VRD +RFHHF +G CSC D+W
Sbjct: 747 CLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 6/347 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           DT  ++ L   Y     +  ARKVFD +P    V WNT++   + +    EAV  F  M+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMV 203

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +G       T++SVL A A   DV   + +H FA K  +  +  V T L+ +Y+KCG +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  +F+ M + + V ++++++G+  N +   ++ LF     LGL  N  T+ ++I   
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           +     +  + +H  + K+GF +N   ++++  ++ +   +  A   F  + EK +  WN
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MISG++++  +   + LFE+M +  + PN  T  S LSAC+ +G +  GK +   ++ +
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGK-WLHRIITE 442

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            ++ PNV+  + +ID+  + G I EA   I N   +     W +++A
Sbjct: 443 EDLEPNVYVMTALIDMYAKCGSISEARR-IFNTMDNKNVVSWNAMIA 488


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 341/574 (59%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L++C+  RA   G+  H +++  G   +   S++LI+ Y+K G +  A K+F  +
Sbjct: 475  TYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL 534

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             ++ +VSW  +I  Y  + +  EA+ LF  M  +G         +S + ACA  + + + 
Sbjct: 535  KEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQG-IHSDNIGFASAISACAGIQALNQG 593

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            +Q+H  A  +    ++ VG AL+ +YA+CG + DA   F+ +  ++ ++W+S+++GF Q+
Sbjct: 594  QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQS 653

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EEAL LF +    G E N FT    + A A +A +  GKQ+HA++ KTG  S    +
Sbjct: 654  GHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVS 713

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            + L+ +YAKCG + DA   F  + EKN + WN M++G+S+H    + + LFE M+Q G+ 
Sbjct: 714  NVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVL 773

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            PN  T++ VLSACSH+G+V++G  YF  M + H ++P   HY+C++D+LGR+GL+  A  
Sbjct: 774  PNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARR 833

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             +  MP    A +  +LL++C  ++N+++ E AA  L  +EP ++  ++LLSN+YA   +
Sbjct: 834  FVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGK 893

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
            W    R R++++D  VKKE  +SW+E+         G + HP + +IY  L  L E   +
Sbjct: 894  WGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAE 953

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
             GY P+T   L+D E  +K    I HSEKLA+ FGL+ L    PI + KNLR+CGDCH++
Sbjct: 954  NGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNW 1013

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K+ S+I+ R  +VRD  RFHHF  G CSC D+W
Sbjct: 1014 IKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 225/422 (53%), Gaps = 15/422 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +C+   A + GK  H+  I  G+++D +    L++ Y KC  I  A + F   
Sbjct: 374 TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST 433

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +V WN ++ +Y       E+  +F  M  EG  P ++FT  S+L  C++ R V   
Sbjct: 434 ETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEP-NQFTYPSILRTCSSLRAVDLG 492

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   LK     NV+V + L+D+YAK G +  A ++F  + E++ V+W++M+AG+ Q+
Sbjct: 493 EQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQH 552

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E + EAL LF+  Q  G+  +    +S I ACAG+ AL QG+Q+HA  C +G+  ++   
Sbjct: 553 EKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVG 612

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV +YA+CG V DAYF F  I  K+ + WN++ISGF++     E + LF +M +AG  
Sbjct: 613 NALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQE 672

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHEAY 393
            N  T+   +SA +++  V+ GK    +++K  H+    V   + +I +  + G I +A 
Sbjct: 673 INSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEV--SNVLITLYAKCGNIDDAE 730

Query: 394 DLILNMPFDATASMWGSLLAS----CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
                MP     S W ++L         ++ L L E   KQL G+ P    NH+    + 
Sbjct: 731 RQFFEMPEKNEIS-WNAMLTGYSQHGHGFKALSLFE-DMKQL-GVLP----NHVTFVGVL 783

Query: 450 AA 451
           +A
Sbjct: 784 SA 785



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 200/385 (51%), Gaps = 17/385 (4%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
             + L +C +      G+  H  ++  G + +T   N L+  YS+ G    A +VF+ M 
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           QR  VS+N++I   +  G   +A+ LF  M  +   P    TV+S+L AC++   +   K
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKP-DCVTVASLLSACSSVGALLVGK 392

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q H +A+KA M  ++ +  ALLD+Y KC  I  A   F S    N V W+ M+  +   +
Sbjct: 393 QFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLD 452

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
              E+  +F + Q+ G+E NQFT  S++  C+ L A+  G+Q+H  + KTGF  N++ +S
Sbjct: 453 NLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSS 512

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            L+DMYAK G +  A  +F  ++EK+VV W  MI+G+++H +  E + LF++MQ  G+H 
Sbjct: 513 VLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHS 572

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-------CMIDILGRAGL 388
           +   + S +SAC+ I  + +G        +Q +    V  YS        ++ +  R G 
Sbjct: 573 DNIGFASAISACAGIQALNQG--------QQIHAQACVSGYSDDLSVGNALVSLYARCGK 624

Query: 389 IHEAYDLILNMPFDATASMWGSLLA 413
           + +AY    +  F      W SL++
Sbjct: 625 VRDAY-FAFDKIFSKDNISWNSLIS 648



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/409 (30%), Positives = 206/409 (50%), Gaps = 6/409 (1%)

Query: 35  TLQATLQSCARERAPVRG-KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T    L+ C     P    +  HA+ I  G  N     N LI+ Y K G ++ A+KVFD 
Sbjct: 171 TYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDG 230

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + +R  VSW  ++   + +G E+EAV LF  M   G  P + +  SSVL AC        
Sbjct: 231 LQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYP-TPYIFSSVLSACTKVEFYKV 289

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +QLH   LK       +V  AL+ +Y++ G    A +VF +M +R+EV+++S+++G  Q
Sbjct: 290 GEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQ 349

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               ++AL LF++  +  L+ +  T++S++ AC+ + AL+ GKQ H+   K G  S++  
Sbjct: 350 QGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIIL 409

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             +L+D+Y KC  +  A+  F   E +NVVLWN M+  +       E   +F +MQ  G+
Sbjct: 410 EGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGI 469

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN+ TY S+L  CS +  V+ G+     ++K      NV+  S +ID+  + G +  A 
Sbjct: 470 EPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHAL 528

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL--FGMEPDNAG 440
            +   +      S W +++A    +     A    K++   G+  DN G
Sbjct: 529 KIFRRLKEKDVVS-WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIG 576



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 237/490 (48%), Gaps = 48/490 (9%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H KI+ MG   + +    L++ Y   G + GA  VFDEMP R +  WN ++  +      
Sbjct: 91  HGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMA 150

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGT 174
              + LF  ML+E   P  E T + VL  C      F C +++H   +    + ++FV  
Sbjct: 151 GRVLGLFRRMLQEKVKP-DERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCN 209

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
            L+D+Y K G ++ A +VF+ + +R+ V+W +M++G  Q+   EEA++LF +    G+  
Sbjct: 210 PLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYP 269

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
             +  SSV+ AC  +     G+Q+H ++ K GF    +  ++LV +Y++ G  + A  VF
Sbjct: 270 TPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVF 329

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
           + + +++ V +N++ISG S+   S + + LF+KM    L P+  T  S+LSACS +G + 
Sbjct: 330 NAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALL 389

Query: 355 KGKSY-------------------FDLMVKQHNV-----------LPNVFHYSCMIDILG 384
            GK +                    DL VK  ++             NV  ++ M+   G
Sbjct: 390 VGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYG 449

Query: 385 RAGLIHEAYDLILNMPFDATAS---MWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNA 439
               ++E++ +   M  +        + S+L +C + R ++L E    Q+   G + +  
Sbjct: 450 LLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVY 509

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-IKGKRNHPRIAEIYSKLE 498
            + +L+ ++YA   +  ++  A K+ R   +K++   SW   I G   H + AE  +   
Sbjct: 510 VSSVLI-DMYA---KLGKLDHALKIFR--RLKEKDVVSWTAMIAGYAQHEKFAEALN--- 560

Query: 499 KLVEEMKKLG 508
            L +EM+  G
Sbjct: 561 -LFKEMQDQG 569



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 130/261 (49%), Gaps = 2/261 (0%)

Query: 108 SYTTNGREQEAVAL-FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
           SY  +  E EA  + F++++ E     +  T   +L  C +     +  +LH   LK   
Sbjct: 40  SYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGF 99

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
              V +   L+D+Y   G +  A  VF+ MP R    W+ ++  FV  ++    L LFRR
Sbjct: 100 CAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRR 159

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
                ++ ++ T + V+  C G        +++HA     G+ +++F  + L+D+Y K G
Sbjct: 160 MLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNG 219

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            +  A  VF G+++++ V W  M+SG S+     E ++LF +M  +G++P    + SVLS
Sbjct: 220 FLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLS 279

Query: 346 ACSHIGMVEKGKSYFDLMVKQ 366
           AC+ +   + G+    L++KQ
Sbjct: 280 ACTKVEFYKVGEQLHGLVLKQ 300


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 336/574 (58%), Gaps = 22/574 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C    A   G+  H +++  G   +   S++LI+ Y+K G +  A K+F  +
Sbjct: 440 TYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL 499

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +VSW  +I  YT + +  EA+ LF  M  +G         +S + ACA  + + + 
Sbjct: 500 KENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQG-IKSDNIGFASAISACAGIQALDQG 558

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  +  +    ++ +G AL+ +YA+CG + +A   F+ +  ++ V+W+S+V+GF Q+
Sbjct: 559 RQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQS 618

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +EEAL +F +    GLE N FT  S + A A +A +  GKQ+H ++ KTG+ S    +
Sbjct: 619 GYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVS 678

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +YAKCG + D             + WN+MI+G+S+H    E + LFE M+Q  + 
Sbjct: 679 NALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVL 725

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T++ VLSACSH+G+V++G SYF  M + HN++P   HY+C++D+LGR+GL+  A  
Sbjct: 726 PNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKR 785

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            +  MP    A +W +LL++C  ++N+++ E AA  L  +EP ++  ++L+SN+YA + +
Sbjct: 786 FVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGK 845

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W+   R R++++D  VKKE  +SWVE+         G +NHPR   IY  L  L     +
Sbjct: 846 WDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAE 905

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P     L D E  +K    I HSE+LA+ FGL+ L    P+ + KNLR+C DCH++
Sbjct: 906 NGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNW 965

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  R  IVRD  RFHHF  GSCSC D+W
Sbjct: 966 IKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 177/331 (53%), Gaps = 16/331 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA   A   GK  H+  I  G+ +D +    L++ Y KC  I  A + F   
Sbjct: 354 TVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF--- 410

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              C    + +  S+           +F  M  EG  P ++FT  S+L  C         
Sbjct: 411 --LCYGQLDNLNKSFQ----------IFTQMQIEGIVP-NQFTYPSILKTCTTLGATDLG 457

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   LK     NV+V + L+D+YAK G +  A ++F  + E + V+W++M+AG+ Q+
Sbjct: 458 EQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQH 517

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           + + EAL LF+  Q  G++ +    +S I ACAG+ AL QG+Q+HA  C +G+  ++   
Sbjct: 518 DKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIG 577

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV +YA+CG V +AY  F  I  K+ V WN+++SGF++     E + +F +M +AGL 
Sbjct: 578 NALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLE 637

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            N  T+ S +SA ++I  V  GK    ++ K
Sbjct: 638 INSFTFGSAVSAAANIANVRIGKQIHGMIRK 668



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 178/339 (52%), Gaps = 18/339 (5%)

Query: 21  IASASANANATELSTL--QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           I+  S N    E   L  Q  L +C +      GK  H  ++  G +++T   N L+  Y
Sbjct: 237 ISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLY 296

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
           S+ G +S A ++F  M QR  VS+N++I      G    A+ALF  M  + + P    TV
Sbjct: 297 SRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKP-DCVTV 355

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           +S+L ACA+   +   KQ H +A+KA M  ++ V  +LLD+Y KC  I  A   F     
Sbjct: 356 ASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF----- 410

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
                   +  G + N    ++  +F + Q+ G+  NQFT  S++  C  L A   G+Q+
Sbjct: 411 --------LCYGQLDN--LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI 460

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H  + KTGF  N++ +S L+DMYAK G +  A  +F  ++E +VV W  MI+G+++H + 
Sbjct: 461 HTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKF 520

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            E + LF++MQ  G+  +   + S +SAC+ I  +++G+
Sbjct: 521 TEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGR 559



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 189/388 (48%), Gaps = 36/388 (9%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HAK I  G  + T   N LI+ Y K G +S A+KVF+ +  R  VSW  +I   + NG E
Sbjct: 187 HAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYE 246

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-CKQLHVFALKAAMDRNVFVGT 174
           +EA+ LF  +               VL AC  K + FE  KQLH   LK       +V  
Sbjct: 247 EEAMLLFCQI---------------VLSACT-KVEFFEFGKQLHGLVLKQGFSSETYVCN 290

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           AL+ +Y++ G +S A ++F  M +R+ V+++S+++G  Q      AL LF++  +   + 
Sbjct: 291 ALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKP 350

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           +  T++S++ ACA + AL  GKQ H+   K G  S++    SL+D+Y KC  +  A+  F
Sbjct: 351 DCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF 410

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
                    L    +   ++  +      +F +MQ  G+ PN+ TY S+L  C+ +G  +
Sbjct: 411 ---------LCYGQLDNLNKSFQ------IFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
            G+     ++K      NV+  S +ID+  + G +  A  +   +  +   S W +++A 
Sbjct: 456 LGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVS-WTAMIAG 513

Query: 415 CRNYRNLELAEIAAKQL--FGMEPDNAG 440
              +     A    K++   G++ DN G
Sbjct: 514 YTQHDKFTEALNLFKEMQDQGIKSDNIG 541



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 215/463 (46%), Gaps = 49/463 (10%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           LI+FY   G ++ A  VFDEMP R +  WN I  ++           LF  ML +    +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTK-NVEF 161

Query: 134 SEFTVSSVLCACAAKRDVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
            E   + VL  C+     F   +Q+H   + +  + + F+   L+D+Y K G +S A +V
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           FE++  R+ V+W +M++G  QN   EEA++LF   Q+            V+ AC  +   
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLF--CQI------------VLSACTKVEFF 267

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             GKQ+H ++ K GF S  +  ++LV +Y++ G +  A  +F  + +++ V +N++ISG 
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGL 327

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           ++       + LF+KM      P+  T  S+LSAC+ +G +  GK +    +K   +  +
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKA-GMTSD 386

Query: 373 VFHYSCMIDILGRAGLIHEAYDLI--------LNMPFDATASM-----------WGSLLA 413
           +     ++D+  +   I  A++          LN  F     M           + S+L 
Sbjct: 387 IVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILK 446

Query: 414 SCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           +C      +L E    Q+   G + +   + +L+ ++YA + + +   +  + +++++V 
Sbjct: 447 TCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLI-DMYAKHGKLDHALKIFRRLKENDV- 504

Query: 472 KEKSKSWVE-IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513
                SW   I G   H +  E  +    L +EM+  G K + 
Sbjct: 505 ----VSWTAMIAGYTQHDKFTEALN----LFKEMQDQGIKSDN 539



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 15/200 (7%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           R+ + G  L+D Y   G ++ A  VF+ MP R+   W+ +   F+   L      LFRR 
Sbjct: 95  RSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM 154

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
               +E+++   + V+  C+G A   +  +Q+HA    +GF S+ F  + L+D+Y K G 
Sbjct: 155 LTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGF 214

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           +  A  VF  ++ ++ V W  MISG S++    E M+LF ++              VLSA
Sbjct: 215 LSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSA 260

Query: 347 CSHIGMVEKGKSYFDLMVKQ 366
           C+ +   E GK    L++KQ
Sbjct: 261 CTKVEFFEFGKQLHGLVLKQ 280


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 338/553 (61%), Gaps = 12/553 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA++    L  D    + L+  Y+K G    A K+FD+MP + +VSWN++I  ++     
Sbjct: 62  HARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--L 119

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             ++  F  M  E     +E T+ S++ AC+   D    K +H F +K      V V  +
Sbjct: 120 HMSLTAFYTMKFEMSVKPNEVTILSMISACSGALDA--GKYIHGFGIKVGGTLEVKVANS 177

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++Y K G ++ A R+FE++P+ N V+W+S++A  V N    E +  F + + LG+E +
Sbjct: 178 LINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQD 237

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           + TI +++ AC  L      + +H ++  TGFG+ +  A++L+D YAK G +  +Y VF+
Sbjct: 238 EGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFT 297

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +   + V W  M++G++ H    E + LFE M   GL P+  T+  +LSACSH G+V +
Sbjct: 298 EVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNE 357

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GKSYF++M + + + P V HYSCM+D+LGR GL+++AY++I NMP +  A +WG+LL +C
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGAC 417

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R + N+EL +  A+ L  MEP +  N+++LSN+Y+A+R W++ A+ R L+++  +K+   
Sbjct: 418 RVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPG 477

Query: 476 KSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S +E          G R+HP   +IYSKLE+L+ +++K GY  +TE+ L DVE+  K++
Sbjct: 478 YSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKED 537

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           ++  HSEKLA+ FGL+    G  + I KNLRICGDCHS  K  S I  R  I+RD  RFH
Sbjct: 538 MINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFH 597

Query: 588 HFTNGSCSCWDFW 600
           HF++G CSC D+W
Sbjct: 598 HFSDGFCSCADYW 610



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 183/359 (50%), Gaps = 21/359 (5%)

Query: 94  MPQRCIVSWNT-IIGSYTTNGREQEAVALF--INMLREGKTPYSEFTVSSVLCACAAKRD 150
           MP R    WN+ I+ ++    R Q  + L    +++R+  TP  E  VS++L A  +   
Sbjct: 1   MPLR----WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATP--EAIVSALLIAVNSCPS 54

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +  C+++H    K+ + R+ F+G  L+  Y K G   DA ++F+ MP ++ V+W+S+++G
Sbjct: 55  ISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISG 114

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           F +  L+      +     + ++ N+ TI S+I AC+G  AL  GK +H    K G    
Sbjct: 115 FSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACSG--ALDAGKYIHGFGIKVGGTLE 171

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +  A+SL++MY K G +  A  +F  I + N V WN++I+    +  + E +  F KM++
Sbjct: 172 VKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRR 231

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+  +E T +++L AC H+G+ +  +S   LM         +   + ++D   + G + 
Sbjct: 232 LGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITIATALLDTYAKLGRLS 290

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNY----RNLELAEIAAKQLFGMEPDNAG-NHLL 444
            +Y +   + F A    W ++LA    +      ++L E  A +  G+EPD+    HLL
Sbjct: 291 ASYGVFTEVGF-ADRVAWTAMLAGYAAHGLGREAIKLFESMANK--GLEPDHVTFTHLL 346



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H   I +G   +   +N LIN Y K G ++ A ++F+ +P    VSWN+II +  T
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVT 215

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG  +E +  F  M R G     E T+ ++L AC         + +H           + 
Sbjct: 216 NGCAREGIDYFNKMRRLG-IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKIT 274

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           + TALLD YAK G +S +  VF  +   + V W++M+AG+  + L  EA+ LF      G
Sbjct: 275 IATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKG 334

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA 290
           LE +  T + ++ AC+    + +GK    V+ +  G    +   S +VD+  +CG + DA
Sbjct: 335 LEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDA 394

Query: 291 YFVFSGIE-EKNVVLWNTMISGFSRHA 316
           Y V   +  E N  +W  ++     H 
Sbjct: 395 YEVIQNMPMEPNAGVWGALLGACRVHG 421



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ A LQ+C         +  H  +   G       +  L++ Y+K G +S +  VF E+
Sbjct: 240 TILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEV 299

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                V+W  ++  Y  +G  +EA+ LF +M  +G  P    T + +L AC+    V E 
Sbjct: 300 GFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEP-DHVTFTHLLSACSHSGLVNEG 358

Query: 155 KQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           K   +V +    ++  V   + ++D+  +CGL++DA  V ++MP E N   W +++ 
Sbjct: 359 KSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLG 415


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/545 (38%), Positives = 323/545 (59%), Gaps = 18/545 (3%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + D +    +++ Y + G I+ AR +FDEMP+R +VSW  +I  Y  NG    A  LF  
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEV 230

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M    +  ++   V  +         V +  +L      A  +  V    A++  + + G
Sbjct: 231 MPERNEVSWTAMLVGYIQAG-----HVEDAAEL----FNAMPEHPVAACNAMMVGFGQRG 281

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
           ++  A  VFE M ER++ TWS+M+  + QNE   EAL  FR     G+  N  ++ S++ 
Sbjct: 282 MVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            CA LA L  G++VHA + +  F  ++FA S+L+ MY KCG +  A  VF   E K++V+
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN+MI+G+++H    + + +F  M+ AG+ P+  TYI  L+ACS+ G V++G+  F+ M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
              ++ P   HYSCM+D+LGR+GL+ EA+DLI NMP +  A +WG+L+ +CR +RN E+A
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIA 521

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK 484
           E+AAK+L  +EP NAG ++LLS+IY +  RWE+ ++ RK I    + K    SW+E   +
Sbjct: 522 EVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKR 581

Query: 485 RN---------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
            +         HP  A I   LEKL   + + GY  +    LHD+++ +K   L +HSE+
Sbjct: 582 VHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSER 641

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
            A+ +GL+ +  G+PIR+MKNLR+CGDCHS +K  ++I  RE ++RD NRFHHF +G CS
Sbjct: 642 QAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCS 701

Query: 596 CWDFW 600
           C D+W
Sbjct: 702 CRDYW 706



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 173/428 (40%), Gaps = 75/428 (17%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N  I   ++ G I GAR  F+ MP R   S+N ++  Y  N     A+ LF  M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
            Y     ++++   + +R         + ++      +V   T+LL  Y + GL++DA R
Sbjct: 81  SY-----NALISGLSLRRQTLPDAAAALASIP--FPPSVVSFTSLLRGYVRHGLLADAIR 133

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILF----------------------RRAQV 229
           +F+ MPERN V+++ ++ G +      EA  LF                      R  + 
Sbjct: 134 LFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEA 193

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDMYAKCGCV 287
             L +++    +V+   A ++   Q  +V+    L +     N  + ++++  Y + G V
Sbjct: 194 RAL-FDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ----------------- 330
            DA  +F+ + E  V   N M+ GF +         +FEKM++                 
Sbjct: 253 EDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNE 312

Query: 331 --------------AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
                          G+ PN  + IS+L+ C+ + +++ G+     M++    + +VF  
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM-DVFAV 371

Query: 377 SCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAK-----Q 430
           S +I +  + G + +A  +     P D    MW S++     Y    L E A       +
Sbjct: 372 SALITMYIKCGNLDKAKRVFHTFEPKDIV--MWNSMIT---GYAQHGLGEQALGIFHDMR 426

Query: 431 LFGMEPDN 438
           L GM PD 
Sbjct: 427 LAGMSPDG 434



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA ++    + D    + LI  Y KCG +  A++VF     + IV WN++I  Y  
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL-HVFALKAAMDRNV 170
           +G  ++A+ +F +M   G +P    T    L AC+    V E +++ +   + +++    
Sbjct: 412 HGLGEQALGIFHDMRLAGMSP-DGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGA 470

Query: 171 FVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
              + ++D+  + GL+ +A  + ++MP E + V W +++  
Sbjct: 471 EHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 344/585 (58%), Gaps = 18/585 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKII----------GMGLNNDTLTSNILINFYSKCGL 83
           STL A L   A++ A  +G   HA  I             L +  L    L++ Y+KCG 
Sbjct: 229 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 288

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  AR+VFD MP R  V+W+ +IG +    R  +A  LF  ML +G    S  +++S L 
Sbjct: 289 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 348

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           ACA+   +   +QLH    K+ +  ++  G +LL +YAK GLI  A  +F+ M  ++ V+
Sbjct: 349 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 408

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           +S++V+G+VQN   EEA ++F++ Q   +E +  T+ S+I AC+ LAAL  G+  H  + 
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
             G  S     ++L+DMYAKCG +  +  VF+ +  +++V WNTMI+G+  H    E   
Sbjct: 469 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 528

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF +M   G  P+  T+I +LSACSH G+V +GK +F +M   + + P + HY CM+D+L
Sbjct: 529 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 588

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + EAY+ I +MP  A   +W +LL +CR Y+N++L +  ++ +  + P+  GN +
Sbjct: 589 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 648

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLSNIY+A  R++E A  R + +    KK    SW+EI G         ++HP+  EIY 
Sbjct: 649 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 708

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           +L+ ++  +KKLGY+P+T   L D+E+  K++ LI HSEKLA+ +G++ L     I + K
Sbjct: 709 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 768

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+CGDCH+ +K  S +  R  IVRD NRFHHF NG CSC DFW
Sbjct: 769 NLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 187/374 (50%), Gaps = 18/374 (4%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA--VALFINMLREGKTPYSEFTVS 139
           G +S A  +FD++P   + ++N +I +Y+++     A  + L+  MLR    P + +T  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAP-NNYTFP 129

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
             L AC+A  D    + +H  A+ A +  ++FV TALLD+Y KC  + DA+ +F +MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 200 NEVTWSSMVAGFVQNELYEEAL--ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           + V W++M+AG+  + +Y  A+  +L  + Q+  L  N  T+ +++   A   AL QG  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 258 VHAVLCKTGFGSN----------MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           VHA   +     N          +   ++L+DMYAKCG ++ A  VF  +  +N V W+ 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHIGMVEKGKSYFDLMVKQ 366
           +I GF   +R  +  +LF+ M   GL     T I S L AC+ +  +  G+    L+ K 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V  ++   + ++ +  +AGLI +A  L   M    T S    +    +N R  E   +
Sbjct: 370 -GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLV 428

Query: 427 AAK-QLFGMEPDNA 439
             K Q   +EPD A
Sbjct: 429 FKKMQACNVEPDAA 442



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + +T+ + + +C+   A   G+  H  +I  GL ++T   N LI+ Y+KCG I  +R+VF
Sbjct: 440 DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF 499

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + MP R IVSWNT+I  Y  +G  +EA ALF+ M   G  P    T   +L AC+    V
Sbjct: 500 NMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP-DGVTFICLLSACSHSGLV 558

Query: 152 FECKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K       H + L   M+  +     ++D+ ++ G + +A    +SMP R +V  W 
Sbjct: 559 IEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 614

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           +++      +  +    + R  Q LG E    F + S I + AG
Sbjct: 615 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 658


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/612 (37%), Positives = 345/612 (56%), Gaps = 49/612 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK--VF 91
           S +  TL  C   +   + K  HA+I+  GL+        LI   +K  +        +F
Sbjct: 47  SQIVTTLDGC---KNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIF 103

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           +++       +N +I  Y    R +E+   +  M +EG  P S FT +++  AC AK DV
Sbjct: 104 NQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVS-FTFTALFKACGAKMDV 162

Query: 152 FECKQLH-VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS---- 206
              +Q+H    L      ++ VG +++D+Y KCG +    +VF+ MP R+ ++W+     
Sbjct: 163 GLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISA 222

Query: 207 ---------------------------MVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
                                      MV+GF QN    EA++ F + Q  G+E ++ T+
Sbjct: 223 YVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITL 282

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGS--NMFAASSLVDMYAKCGCVVDAYFVFSGI 297
             VI ACA L A      +  V  K+ FG   ++   S+L+DMY+KCG V DAY VF G+
Sbjct: 283 IGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGM 342

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +E+NV  +++MI GF+ H R  + M LF++M +  + PN  T+I VL+ACSH GMVE+G 
Sbjct: 343 KERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGW 402

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
             F+LM K + + P+  HY+CM+D+LGRAG + EA++L+  MP +    +WG+LL +CR 
Sbjct: 403 QIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRI 462

Query: 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477
           +++ ++A IAA  LF +EP   GN++LL+NIYA+  RW +V+  RKL+R   ++K  + S
Sbjct: 463 HKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFS 522

Query: 478 WVE---------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
           W+E           G   HPR  EI   LE L++ ++  GY+P      +DV D  K+ +
Sbjct: 523 WIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRI 582

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHH 588
           L+ HSEKLAL FGL+   PG  IRI+KNLRIC DCHS +  AS+I GRE IVRD+ RFHH
Sbjct: 583 LMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHH 642

Query: 589 FTNGSCSCWDFW 600
           F +G CSC +FW
Sbjct: 643 FHDGICSCGNFW 654


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 329/542 (60%), Gaps = 8/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D  + NILI+ Y+K GL+  A+ +FD+MP+R   SW  +I  Y  + R  EA+ LF  M 
Sbjct: 135 DLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMK 194

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R   +  ++FTVSS L A AA   +   K++H + ++  +D +  V +AL D+Y KCG I
Sbjct: 195 RSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSI 254

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A  +F+ M +R+ VTW++M+  + Q+   +E   LF      G+  N+FT S V+ AC
Sbjct: 255 EEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNAC 314

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A   +   GK+VH  + + GF    FAAS+LV MY+KCG +V A  VF    + ++  W 
Sbjct: 315 ANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWT 374

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I+G++++ +  E +  FE + ++G  P+  T++ VLSAC+H G+V+KG  YF  + +Q
Sbjct: 375 SLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQ 434

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + +     HY+C+ID+L R+G   EA ++I  M       +W SLL  CR + NL+LA+ 
Sbjct: 435 YGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQR 494

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AA+ LF +EP+N   ++ L+NIYA    W EVA+ RK + D  V K+   SW+ IK    
Sbjct: 495 AAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVH 554

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G  +HP+  EI   L KL + MK+ G+ P+T   LHDVED +K++ L +HSEKLA+
Sbjct: 555 VFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAV 614

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FG++    G PI++ KNLR C DCH+ +KF S+I  R+ IVRD NRFH F +G CSC D
Sbjct: 615 AFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRD 674

Query: 599 FW 600
           +W
Sbjct: 675 YW 676



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 16/309 (5%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H  I+  GL++D +  + L + Y KCG I  AR +FD+M  R IV+W  +I  Y  
Sbjct: 222 GKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQ 281

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +GR +E   LF ++LR G  P +EFT S VL ACA +      K++H +  +   D   F
Sbjct: 282 DGRRKEGFDLFADLLRSGIRP-NEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSF 340

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
             +AL+ +Y+KCG +  A RVF+  P+ +  +W+S++AG+ QN   +EA+  F      G
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSG 400

Query: 232 LEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            + +  T   V+ ACA    + +G    H++  + G        + ++D+ A+ G   +A
Sbjct: 401 TQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEA 460

Query: 291 YFVFSGIEEK-NVVLWNTMISGFSRHA------RSVEVMILFEKMQQAGLHPNEQTYISV 343
             + S +  K +  LW +++ G   H       R+ E +   E         N  TY+++
Sbjct: 461 ENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEP-------ENPATYVTL 513

Query: 344 LSACSHIGM 352
            +  +  GM
Sbjct: 514 ANIYATAGM 522



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 34/307 (11%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC--------------- 183
           S+++ +C   R + + K++H     +     +F+   LL++YAKC               
Sbjct: 74  STLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPE 133

Query: 184 ----------------GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR-R 226
                           GL+ +A  +F+ MPER+  +W++M++G+V+++   EAL LFR  
Sbjct: 134 RDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMM 193

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            +    + N+FT+SS + A A +  L  GK++H  + +TG  S+    S+L DMY KCG 
Sbjct: 194 KRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGS 253

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + +A  +F  + ++++V W  MI  + +  R  E   LF  + ++G+ PNE T+  VL+A
Sbjct: 254 IEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNA 313

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           C++    E GK     M +     P  F  S ++ +  + G +  A  +    P     S
Sbjct: 314 CANQTSEELGKKVHGYMTRV-GFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFS 372

Query: 407 MWGSLLA 413
            W SL+A
Sbjct: 373 -WTSLIA 378



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA + +   GK  H  +  +G +  +  ++ L++ YSKCG +  A +VF E 
Sbjct: 306 TFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKET 365

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
           PQ  + SW ++I  Y  NG+  EA+  F  +++ G  P    T   VL ACA    V + 
Sbjct: 366 PQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQP-DHITFVGVLSACAHAGLVDKG 424

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
               H    +  +         ++D+ A+ G   +A  +   M  + ++  W+S++ G
Sbjct: 425 LDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGG 482



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 12/202 (5%)

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN L E   IL +  +     Y     S++I +C     L QGK+VH  +  +GF   +F
Sbjct: 52  QNRLKEALQILHQIDKPSASVY-----STLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLF 106

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             + L++MYAKC  ++D+  +F  + E+++  WN +ISG+++     E   LF+KM +  
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER- 165

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH-- 390
              +  ++ +++S         +    F +M +  N   N F  S  +        +   
Sbjct: 166 ---DNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIG 222

Query: 391 -EAYDLILNMPFDATASMWGSL 411
            E +  I+    D+   +W +L
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSAL 244


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 345/589 (58%), Gaps = 42/589 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTS-NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++  A+I+   +    + S N LI  Y + G+++ A+++FD+MP R  +SW  +I  Y 
Sbjct: 336 GRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYA 395

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NGR +EA+ L   + R G  P S  +++S+  AC+    +    Q+H  A+K     N 
Sbjct: 396 QNGRSEEALGLLQELHRSGMLP-SLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNS 454

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF------ 224
           F   AL+ +Y KC  +  A +VF  M  ++ V+W+S +A  VQN+L +EA   F      
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR 514

Query: 225 ----------------RRAQVLGLEYNQF---------TISSVICACAGLAALIQGKQVH 259
                           +  + +G     F          ++ ++  C  L A   G+Q+H
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIH 574

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            V  K G  S +  A++L+ MY KCGC  D+  +F  +EE+++  WNT+I+G+++H    
Sbjct: 575 TVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFTWNTIITGYAQHGLGR 633

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + +++ M+ AG+ PNE T++ +L+ACSH G+V++G  +F  M + + + P   HY+CM
Sbjct: 634 EAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACM 693

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGR G +  A   I +MP +    +W +LL +C+ ++N E+ + AA++LF +EP NA
Sbjct: 694 VDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNA 753

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           GN+++LSNIY++   W EVA  RK+++   V KE   SW +IK        G + H +I 
Sbjct: 754 GNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIE 813

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           EI + LE+L   +K  GY P+TE  LHD+++ +K+  L++HSEKLA+ + L+    G+PI
Sbjct: 814 EIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPI 873

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I+KNLRICGDCH+F+KF S +  R+  +RD NRFHHF NGSCSC DFW
Sbjct: 874 QILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 63  GLNNDTLTSNILINFYSK-CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           G   D +    ++N YS+   ++  A K F+ M +R   +W+T+I + +  GR   A+A+
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH--VFALKAAMDRNVFVGTALLDV 179
                      Y    V S+ C  A    + +C ++       +   +  V    AL+  
Sbjct: 314 -----------YERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y + G++++A  +F+ MP RN ++W+ M+AG+ QN   EEAL L +     G+  +  ++
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           +S+  AC+ + AL  G QVH++  K G   N FA ++L+ MY KC  +  A  VFS +  
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K++V WN+ ++   ++    E    F+ M    L  ++ ++ +++SA +H     +    
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGA 538

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           F  M  +H  LPN    + ++ + G  G
Sbjct: 539 FKTMFCEHE-LPNSPILTILLGVCGSLG 565



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 175/370 (47%), Gaps = 40/370 (10%)

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM----LREGKTPYSE 135
           + G +  AR+VFD MP+R I++WN++I +Y  NG    A  L+  +    +R G    S 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 136 F--------------------TVS-SVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVG 173
           +                    TV+ + + +C  +  D+   ++L      A   R+V   
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRL----FDAMPSRDVSSW 161

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            ++L  Y     + DA  +FE MPERN V+W+ M++G+ + E + +A  +F +    GL 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD-AYF 292
            +Q   +S + A  GL  L   + +  +  KTGF  ++   ++++++Y++   V+D A  
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
            F  + E+N   W+TMI+  S   R    + ++E+     +        ++++  +  G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGR 337

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           ++  +  F+ + +     P V  ++ +I    + G+++EA +L   MPF  T S  G + 
Sbjct: 338 IDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 413 ASCRNYRNLE 422
              +N R+ E
Sbjct: 393 GYAQNGRSEE 402



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 141/316 (44%), Gaps = 35/316 (11%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC----------- 81
           LS+L +   +C+   A   G   H+  + +G   ++   N LI  Y KC           
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 82  --------------------GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                                L+  AR  FD M  R  VSW TII +Y    +  EA+  
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGA 538

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M  E + P S   ++ +L  C +       +Q+H  A+K  MD  + V  AL+ +Y 
Sbjct: 539 FKTMFCEHELPNSPI-LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYF 597

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KCG  +D+ R+F+ M ER+  TW++++ G+ Q+ L  EA+ +++  +  G+  N+ T   
Sbjct: 598 KCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVG 656

Query: 242 VICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA-YFVFSGIEE 299
           ++ AC+    + +G +    + +  G        + +VD+  + G V  A  F++    E
Sbjct: 657 LLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIE 716

Query: 300 KNVVLWNTMISGFSRH 315
            + V+W+ ++     H
Sbjct: 717 PDTVIWSALLGACKIH 732


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 339/591 (57%), Gaps = 31/591 (5%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A+ +    S     L+S    RA   G+  HA +I  GL ++T     ++N Y KCG + 
Sbjct: 177 ASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLV 236

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
           GA++VFD+M  +  V+   ++  YT  GR ++A+ LF++++ EG   +  F  S VL AC
Sbjct: 237 GAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEG-VEWDSFVFSVVLKAC 295

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           A+  ++   KQ+H    K  ++  V VGT L+D Y KC     A R F+ + E N+V+WS
Sbjct: 296 ASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWS 355

Query: 206 SMVAGFVQNELYEEALILFR-----RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
           ++++G+ Q   +EEA+  F+      A +L    N FT +S+  AC+ LA    G QVHA
Sbjct: 356 AIISGYCQMSQFEEAVKTFKSLRSKNASIL----NSFTYTSIFQACSVLADCNIGGQVHA 411

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
              K     + +  S+L+ MY+KCGC+ DA  VF  ++  ++V W   ISG + +  + E
Sbjct: 412 DAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASE 471

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM   G+ PN  T+I+VL+ACSH G+VE+GK   D M++++NV P + HY CMI
Sbjct: 472 ALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMI 531

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           DI  R+GL+ EA   + NMPF+  A  W   L+ C  ++NLEL EIA ++L  ++P++  
Sbjct: 532 DIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTA 591

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
            ++L  N+Y    +WEE A   KL+ +  +KKE S SW++ KGK        ++HP+  E
Sbjct: 592 GYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQE 651

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL---CPGV 549
           IY KL++    M         E D+     + ++E L+ HSE+LA+ FGL+ +    P  
Sbjct: 652 IYEKLKEFDGFM---------EGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPA- 701

Query: 550 PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           PI++ KNLR C DCH F K  S + G E ++RD  RFHHF  G CSC D+W
Sbjct: 702 PIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 200/408 (49%), Gaps = 8/408 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDT-LTSNILINFYSKCGLISGARKVFDE 93
           + Q   ++C   R+   G++ H ++  MG+ N + L  N ++  Y +C  +  A K+FDE
Sbjct: 85  SYQCLFEACRELRSLSHGRLLHDRM-RMGIENPSVLLQNCVLQMYCECRSLEDADKLFDE 143

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +   VS  T+I +Y   G   +AV LF  ML  G  P S    +++L +    R +  
Sbjct: 144 MSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSM-YTTLLKSLVNPRALDF 202

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+H   ++A +  N  + T ++++Y KCG +  A RVF+ M  +  V  + ++ G+ Q
Sbjct: 203 GRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQ 262

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
                +AL LF      G+E++ F  S V+ ACA L  L  GKQ+HA + K G  S +  
Sbjct: 263 AGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSV 322

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + LVD Y KC     A   F  I E N V W+ +ISG+ + ++  E +  F+ ++    
Sbjct: 323 GTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNA 382

Query: 334 HP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              N  TY S+  ACS +     G       +K+ +++ + +  S +I +  + G + +A
Sbjct: 383 SILNSFTYTSIFQACSVLADCNIGGQVHADAIKR-SLIGSQYGESALITMYSKCGCLDDA 441

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDN 438
            ++  +M  +     W + ++    Y N   A    +++   GM+P++
Sbjct: 442 NEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNS 488


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 327/524 (62%), Gaps = 9/524 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NIL   Y K G + GARK+FDEMP+R + +WN ++   T  G ++E++  F++M 
Sbjct: 172 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 231

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG  P  EF + SV   CA  RDV   +Q+H + +++ +DR++ VG++L  +Y +CG +
Sbjct: 232 REGMHP-DEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 290

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +   V   +P  + V+ ++++AG  QN   E AL  F   + +G+  +  T  S I +C
Sbjct: 291 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 350

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + LAAL QG+Q+H  + K G    +   + LV MY++CGC+ D+  VF G    +  L +
Sbjct: 351 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 410

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MIS +  H    + + LF++M   G  P++ T++++L ACSH G+ E+G   F+LM K 
Sbjct: 411 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 470

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P+V HY+C++D+LGR+G + EA  LIL+MP      +W +LL++C+  +N ++AE 
Sbjct: 471 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 530

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
            AK++  ++P ++ +++LLSNI A +RRW +V+  RK +RD+ V+KE   SWVE+K    
Sbjct: 531 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 590

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G  +HPR  EI   LE+++ ++++ GY P+    LHD+ED  K+  L HHSEKLA+
Sbjct: 591 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 650

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
            F  + L  GVPIR+MKNLR+C DCH  +K  S++ GRE +VRD
Sbjct: 651 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 135/259 (52%), Gaps = 9/259 (3%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT + ++ A A   D+   ++L     +    RNV     L   Y K G +  A ++F+ 
Sbjct: 143 FTANHLMLAYADLGDLTAAREL----FERIPRRNVMSWNILFGGYIKNGDLGGARKLFDE 198

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MPERN  TW++MVAG       EE+L  F   +  G+  ++F + SV   CAGL  ++ G
Sbjct: 199 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 258

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +QVHA + ++G   +M   SSL  MY +CGC+ +   V   +   ++V  NT+I+G +++
Sbjct: 259 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 318

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNV 373
             S   +  F  M+  G+  +  T++S +S+CS +  + +G+     ++K     V+P +
Sbjct: 319 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 378

Query: 374 FHYSCMIDILGRAGLIHEA 392
              +C++ +  R G + ++
Sbjct: 379 ---TCLVHMYSRCGCLGDS 394



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA  R  V G+  HA ++  GL+ D    + L + Y +CG +     V   +P
Sbjct: 242 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 301

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS NTII   T NG  + A+  F  M+R         T  S + +C+    + + +
Sbjct: 302 SLSIVSCNTIIAGRTQNGDSEGALEYFC-MMRSVGVAADVVTFVSAISSCSDLAALAQGQ 360

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   +KA +D+ V V T L+ +Y++CG + D+ RVF      +    S+M++ +  + 
Sbjct: 361 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHG 420

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
             ++A+ LF++    G E +  T  +++ AC+      +G     ++ KT G   ++   
Sbjct: 421 HGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 480

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S     + V+W T++S
Sbjct: 481 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLS 517



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A ++ T  + + SC+   A  +G+  H +++  G++        L++ YS+CG +  + +
Sbjct: 337 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 396

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--- 146
           VF           + +I +Y  +G  Q+A+ LF  M+  G  P S+ T  ++L AC+   
Sbjct: 397 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEP-SDVTFLALLYACSHSG 455

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            K +  +C +L        M  +V   T ++D+  + G + +A  +  SMP   + V W 
Sbjct: 456 LKEEGMDCFEL--MTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWK 513

Query: 206 SMVA 209
           ++++
Sbjct: 514 TLLS 517



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           AC  L  L   +Q+HA    +G  ++ F A+ L+  YA  G +  A  +F  I  +NV+ 
Sbjct: 119 ACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 175

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN +  G+ ++        LF++M +     N  T+ ++++  +++G  E+   +F L +
Sbjct: 176 WNILFGGYIKNGDLGGARKLFDEMPER----NVATWNAMVAGLTNLGFDEESLGFF-LDM 230

Query: 365 KQHNVLPNVF 374
           ++  + P+ F
Sbjct: 231 RREGMHPDEF 240


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 344/582 (59%), Gaps = 18/582 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVF 91
           TL +   +CA       GK  H+  I  GL +D   S  L++ Y+KC   G +   RKVF
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVF 328

Query: 92  DEMPQRCIVSWNTIIGSYTTN-GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           D M    ++SW  +I  Y  N     EA+ LF  M+ +G    + FT SS   AC    D
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
               KQ+   A K  +  N  V  +++ ++ K   + DA R FES+ E+N V++++ + G
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG 448

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
             +N  +E+A  L        L  + FT +S++   A + ++ +G+Q+H+ + K G   N
Sbjct: 449 TCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCN 508

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++L+ MY+KCG +  A  VF+ +E +NV+ W +MI+GF++H  ++ V+  F +M +
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIE 568

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ PNE TY+++LSACSH+G+V +G  +F+ M + H + P + HY+CM+D+L RAGL+ 
Sbjct: 569 EGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +A++ I  MPF A   +W + L +CR + N EL ++AA+++  ++P+    ++ LSNIYA
Sbjct: 629 DAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYA 688

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
              +WEE    R+ +++  + KE   SW+E+         G   HP   +IY +L++L+ 
Sbjct: 689 CAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLIT 748

Query: 503 EMKKLGYKPETEHDLHDV----EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           E+K+ GY P+T+  LH +    +++ K+ LL  HSEK+A+ FGL+      P+R+ KNLR
Sbjct: 749 EIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLR 808

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +CGDCH+ MK+ S ++GRE ++RDLNRFHHF +G CSC D+W
Sbjct: 809 VCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 210/412 (50%), Gaps = 20/412 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L+SC R R    GK+ HA++I   +  D++  N LI+ YSK G  + A  VF+ M
Sbjct: 64  TFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETM 123

Query: 95  ---PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
               +R +VSW+ ++  Y  NGRE +A+ +F+  L  G  P +++  ++V+ AC+    V
Sbjct: 124 RRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP-NDYCYTAVIRACSNSDFV 182

Query: 152 FECKQLHVFALKAA-MDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVA 209
              +    F +K    + +V VG +L+D++ K      +A +VF+ M E N VTW+ M+ 
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
             +Q     EA+  F    + G E ++FT+SSV  ACA L  L  GKQ+H+   ++G   
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVD 302

Query: 270 NMFAASSLVDMYAKC---GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-SVEVMILF 325
           ++    SLVDMYAKC   G V D   VF  +E+ +V+ W  +I+G+ ++   + E + LF
Sbjct: 303 DV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLF 360

Query: 326 EKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
            +M  Q  + PN  T+ S   AC ++     GK       K+  +  N    + +I +  
Sbjct: 361 SEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVISMFV 419

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE-----LAEIAAKQL 431
           ++  + +A     ++      S    L  +CRN  N E     L+EI  ++L
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNL-NFEQAFKLLSEITEREL 470



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 5/260 (1%)

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFAL 162
           + +I  +   G  + AV+    M R+G  P    T SS+L +C   RD    K +H   +
Sbjct: 30  DRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLI 89

Query: 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFESM---PERNEVTWSSMVAGFVQNELYEE 219
           +  ++ +  +  +L+ +Y+K G  + A  VFE+M    +R+ V+WS+M+A +  N    +
Sbjct: 90  EFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELD 149

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLV 278
           A+ +F     LGL  N +  ++VI AC+    +  G+     L KTG F S++    SL+
Sbjct: 150 AIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLI 209

Query: 279 DMYAKC-GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           DM+ K      +AY VF  + E NVV W  MI+   +     E +  F  M  +G   ++
Sbjct: 210 DMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269

Query: 338 QTYISVLSACSHIGMVEKGK 357
            T  SV SAC+ +  +  GK
Sbjct: 270 FTLSSVFSACAELENLSLGK 289


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 346/585 (59%), Gaps = 18/585 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNND----------TLTSNILINFYSKCGL 83
           STL A L   A++ A  +G   HA  I   L+++           L    L++ Y+KCG 
Sbjct: 229 STLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGS 288

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  AR+VFD MP R  V+W+ +IG +    R  +A  LF  ML +G    S  +++S L 
Sbjct: 289 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 348

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           ACA+   +   +QLH    K+ +  ++  G +LL +YAK GLI  A  +F+ M  ++ V+
Sbjct: 349 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 408

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           +S++V+G+VQN   EEA ++F++ Q   +E +  T+ S+I AC+ LAAL  G+  H  + 
Sbjct: 409 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 468

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
             G  S     ++L+DMYAKCG +  +  VF+ +  +++V WNTMI+G+  H    E   
Sbjct: 469 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 528

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF +M   G  P+  T+I +LSACSH G+V +GK +F +M   + + P + HY CM+D+L
Sbjct: 529 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLL 588

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + EAY+ I +MP  A   +W +LL +CR Y+N++L +  ++ +  + P+  GN +
Sbjct: 589 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 648

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLSNIY+A  R++E A  R + +    KK    SW+EI G         ++HP+  EIY 
Sbjct: 649 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 708

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           +L+ ++  +KKLGY+P+T   L D+E+  K++ LI HSEKLA+ +G++ L     I + K
Sbjct: 709 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 768

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+CGDCH+ +K  S +  R  IVRD NRFHHF NG CSC DFW
Sbjct: 769 NLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 188/374 (50%), Gaps = 18/374 (4%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA--VALFINMLREGKTPYSEFTVS 139
           G +S A  +FD++P   + ++N +I +Y+++     A  + L+  MLR    P + +T  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAP-NNYTFP 129

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
             L AC+A  D    + +H  A+ A +  ++FV TALLD+Y KC  + DA+ +F +MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 200 NEVTWSSMVAGFVQNELYEEAL--ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           + V W++M+AG+  + +Y  A+  +L  + Q+  L  N  T+ +++   A   AL QG  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 258 VHAVLCKTGFGSN----------MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           VHA   +    SN          +   ++L+DMYAKCG ++ A  VF  +  +N V W+ 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHIGMVEKGKSYFDLMVKQ 366
           +I GF   +R  +  +LF+ M   GL     T I S L AC+ +  +  G+    L+ K 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V  ++   + ++ +  +AGLI +A  L   M    T S    +    +N R  E   +
Sbjct: 370 -GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLV 428

Query: 427 AAK-QLFGMEPDNA 439
             K Q   +EPD A
Sbjct: 429 FKKMQACNVEPDAA 442



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + +T+ + + +C+   A   G+  H  +I  GL ++T   N LI+ Y+KCG I  +R+VF
Sbjct: 440 DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF 499

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + MP R IVSWNT+I  Y  +G  +EA ALF+ M   G  P    T   +L AC+    V
Sbjct: 500 NMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP-DGVTFICLLSACSHSGLV 558

Query: 152 FECKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K       H + L   M+  +     ++D+ ++ G + +A    +SMP R +V  W 
Sbjct: 559 IEGKHWFHVMRHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 614

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           +++      +  +    + R  Q LG E    F + S I + AG
Sbjct: 615 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 658


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 345/589 (58%), Gaps = 42/589 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTS-NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++  A+I+   +    + S N LI  Y + G+++ A+++FD+MP R  +SW  +I  Y 
Sbjct: 336 GRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYA 395

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NGR +EA+ L   + R G  P S  +++S+  AC+    +    Q+H  A+K     N 
Sbjct: 396 QNGRSEEALGLLQELHRSGMLP-SLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNS 454

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF------ 224
           F   AL+ +Y KC  +  A +VF  M  ++ V+W+S +A  VQN+L +EA   F      
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR 514

Query: 225 ----------------RRAQVLGLEYNQF---------TISSVICACAGLAALIQGKQVH 259
                           +  + +G     F          ++ ++  C  L A   G+Q+H
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIH 574

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            V  K G  S +  A++L+ MY KCGC  D+  +F  +EE+++  WNT+I+G+++H    
Sbjct: 575 TVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDLMEERDIFTWNTIITGYAQHGLGR 633

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + +++ M+ AG+ PNE T++ +L+ACSH G+V++G  +F  M + + + P   HY+CM
Sbjct: 634 EAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACM 693

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGR G +  A   I +MP +    +W +LL +C+ ++N E+ + AA++LF +EP NA
Sbjct: 694 VDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNA 753

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           GN+++LSNIY++   W EVA  RK+++   V KE   SW +IK        G + H +I 
Sbjct: 754 GNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIE 813

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           EI + LE+L   +K  GY P+TE  LHD+++ +K+  L++HSEKLA+ + L+    G+PI
Sbjct: 814 EIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPI 873

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +I+KNLRICGDCH+F+KF S +  R+  +RD NRFHHF NGSCSC DFW
Sbjct: 874 QILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 63  GLNNDTLTSNILINFYSK-CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           G   D +    ++N YS+   ++  A K F+ M +R   +W+T+I + +  GR   A+A+
Sbjct: 254 GFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAV 313

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH--VFALKAAMDRNVFVGTALLDV 179
                      Y    V S+ C  A    + +C ++       +   +  V    AL+  
Sbjct: 314 -----------YERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y + G++++A  +F+ MP RN ++W+ M+AG+ QN   EEAL L +     G+  +  ++
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           +S+  AC+ + AL  G QVH++  K G   N FA ++L+ MY KC  +  A  VFS +  
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K++V WN+ ++   ++    E    F+ M    L  ++ ++ +++SA +H     +    
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGA 538

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           F  M  +H  LPN    + ++ + G  G
Sbjct: 539 FKTMFCEHE-LPNSPILTILLGVCGSLG 565



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 175/370 (47%), Gaps = 40/370 (10%)

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM----LREGKTPYSE 135
           + G +  AR+VFD MP+R I++WN++I +Y  NG    A  L+  +    +R G    S 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 136 F--------------------TVS-SVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVG 173
           +                    TV+ + + +C  +  D+   ++L      A   R+V   
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRL----FDAMPSRDVSSW 161

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            ++L  Y     + DA  +FE MPERN V+W+ M++G+ + E + +A  +F +    GL 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD-AYF 292
            +Q   +S + A  GL  L   + +  +  KTGF  ++   ++++++Y++   V+D A  
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
            F  + E+N   W+TMI+  S   R    + ++E+     +        ++++  +  G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGR 337

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           ++  +  F+ + +     P V  ++ +I    + G+++EA +L   MPF  T S  G + 
Sbjct: 338 IDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIA 392

Query: 413 ASCRNYRNLE 422
              +N R+ E
Sbjct: 393 GYAQNGRSEE 402



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 141/316 (44%), Gaps = 35/316 (11%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC----------- 81
           LS+L +   +C+   A   G   H+  + +G   ++   N LI  Y KC           
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 82  --------------------GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                                L+  AR  FD M  R  VSW TII +Y    +  EA+  
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGA 538

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M  E + P S   ++ +L  C +       +Q+H  A+K  MD  + V  AL+ +Y 
Sbjct: 539 FKTMFCEHELPNSPI-LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYF 597

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KCG  +D+ R+F+ M ER+  TW++++ G+ Q+ L  EA+ +++  +  G+  N+ T   
Sbjct: 598 KCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVG 656

Query: 242 VICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA-YFVFSGIEE 299
           ++ AC+    + +G +    + +  G        + +VD+  + G V  A  F++    E
Sbjct: 657 LLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIE 716

Query: 300 KNVVLWNTMISGFSRH 315
            + V+W+ ++     H
Sbjct: 717 PDTVIWSALLGACKIH 732


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/574 (40%), Positives = 334/574 (58%), Gaps = 37/574 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L +C    A V G+  H+ +   G   +    + L++ Y+KC  +  A KVF+EM
Sbjct: 12  TFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEM 71

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P                             +L E  T   E + SSV  ACA   ++   
Sbjct: 72  P----------------------------TLLLENLTALDEVSFSSVFSACANAGNLEFG 103

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H  ALK  +   V++  +L D+Y KCGL +D +++F +   R+ VTW+ M+  +V N
Sbjct: 104 KQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYN 163

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             YE+A   F   +  G   ++ + SSV+ +CA LAAL QG  +H  + ++GF  N+  A
Sbjct: 164 HNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVA 223

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           SSL+ MYAKCG +VDA+ +F   E++NVV W  +I+   +H  +  V+ LFE+M + G+ 
Sbjct: 224 SSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIK 283

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++SVLSACSH G VE+G  YF+ M+K H + P   HY+C++D+L RAG +  A  
Sbjct: 284 PDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKR 343

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP    AS+WG+LL++CRN+ NL + +  A +LF +EPDN GN++LL NI   N  
Sbjct: 344 FIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGM 403

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
             E    R+ +    V+KE   SW++IK          ++H +  EIY  LEKL E +KK
Sbjct: 404 LNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKK 463

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY  ETE  ++  E+ ++Q L  +HSEK+AL FGL+ L  G PIRI KNLR CGDCH+ 
Sbjct: 464 KGYVAETEFAINTAEEYKEQSLW-YHSEKIALAFGLLSLPAGAPIRIKKNLRTCGDCHTV 522

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MKFAS I  RE IVRD+NRFHHFTNG CSC D+W
Sbjct: 523 MKFASEIFAREIIVRDINRFHHFTNGICSCGDYW 556



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 36/317 (11%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M R G  P + +T S+VL AC         +Q+H    K      VFV +AL+D+YAKC 
Sbjct: 1   MRRSGVYP-NHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCC 59

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            +  A +VFE MP                        +L      L    ++ + SSV  
Sbjct: 60  DMLMAEKVFEEMPT-----------------------LLLENLTAL----DEVSFSSVFS 92

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           ACA    L  GKQVH V  K G  + ++  +SL DMY KCG   D   +FS    ++VV 
Sbjct: 93  ACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVT 152

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN MI  +  +    +    F  M++ G  P+E +Y SVL +C+++  + +G    + ++
Sbjct: 153 WNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQII 212

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN---- 420
           +    + N+   S +I +  + G + +A+  I     D     W +++A+C+ + +    
Sbjct: 213 RS-GFVKNLRVASSLITMYAKCGSLVDAFQ-IFEETEDRNVVCWTAIIAACQQHGHANWV 270

Query: 421 LELAEIAAKQLFGMEPD 437
           +EL E   ++  G++PD
Sbjct: 271 VELFEQMLRE--GIKPD 285



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ++  + L SCA   A  +G + H +II  G   +   ++ LI  Y+KCG +  A ++F+E
Sbjct: 186 ASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEE 245

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              R +V W  II +   +G     V LF  MLREG  P    T  SVL AC+    V E
Sbjct: 246 TEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKP-DYITFVSVLSACSHTGRVEE 304

Query: 154 CKQLHVFALKAAMD-RNVFVG----TALLDVYAKCGLISDASRVFESMPERNEVT-WSSM 207
                 F   + +    ++ G      ++D+ ++ G +  A R  E MP + + + W ++
Sbjct: 305 ----GFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGAL 360

Query: 208 VAG 210
           ++ 
Sbjct: 361 LSA 363


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/565 (39%), Positives = 345/565 (61%), Gaps = 19/565 (3%)

Query: 52  GKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+  H   I  GL  +D  +++ L++ Y+ C     ARK FDE+P    V    +   Y 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC---KQLHVFALKAAMD 167
            N     ++ALF  ++  G    +    ++ L A +A   + +C     LH   +K  +D
Sbjct: 168 RNNLVYPSLALFRKLIASGSA--TAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLD 225

Query: 168 RNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
            +  V   +LD YAK G   +  A +VF++M E++ V+W+SM+A + QN +  +AL L+R
Sbjct: 226 GDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYR 284

Query: 226 RA-QVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
           +   V G ++ N  T+S+++ ACA    +  GK +H  + + G   N++  +S+VDMY+K
Sbjct: 285 KMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSK 344

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           CG V  A   F  I+EKN++ W+ MI+G+  H    E + +F +M ++G +PN  T+ISV
Sbjct: 345 CGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISV 404

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           L+ACSH G+++KG+ +++ M K+  + P V HY CM+D+LGRAG + EAY LI  M    
Sbjct: 405 LAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKP 464

Query: 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463
            A++WG+LL++CR ++N+ELAEI+AK+LF ++  N G ++LLSNIYA    W++V R R 
Sbjct: 465 DAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRV 524

Query: 464 LIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEH 515
           L++   ++K    S VE+KG+        ++HP+  EIYS L KL+E+M++ GY P T  
Sbjct: 525 LVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGS 584

Query: 516 DLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
            LHD+++  K   L  HSEKLA+ F LM   PG  I ++KNLR+C DCH+ +K  ++IA 
Sbjct: 585 VLHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQ 644

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           RE IVRDL RFHHF +GSCSC D+W
Sbjct: 645 REIIVRDLQRFHHFKDGSCSCGDYW 669


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/623 (38%), Positives = 352/623 (56%), Gaps = 60/623 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L   L +CA   A  RGK  H   +  GL  D    N +++ Y+KCG++  A KVF+ M
Sbjct: 252 SLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERM 311

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALF-------------------------------I 123
             + +VSWN ++  Y+  GR  +A+ LF                               +
Sbjct: 312 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 371

Query: 124 NMLRE----GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD-------RNVFV 172
           ++ R+    G  P +  T+ S+L  CA+   +   K+ H  A+K  ++        ++ V
Sbjct: 372 DVFRQMLLCGSEP-NVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMV 430

Query: 173 GTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
             AL+D+Y+KC     A  +F+ +P  +R+ VTW+ ++ G  Q+    EAL LF  +Q+L
Sbjct: 431 INALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELF--SQML 488

Query: 231 GLE----YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM-FAASSLVDMYAKCG 285
             +     N FTIS  + ACA L AL  G+Q+HA + +  F S M F A+ L+DMY+K G
Sbjct: 489 QPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSG 548

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            V  A  VF  + ++N V W ++++G+  H R  E + +F +MQ+  L P+  T++ VL 
Sbjct: 549 DVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLY 608

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           ACSH GMV++G +YF+ M K   V+P   HY+CM+D+L RAG + EA +LI  MP   T 
Sbjct: 609 ACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTP 668

Query: 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465
           ++W +LL++CR Y N+EL E AA QL  +E  N G++ LLSNIYA  R W++VAR R L+
Sbjct: 669 AVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLM 728

Query: 466 RDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517
           +++ +KK    SWV+          G  +HP   +IY  L  L++ +K LGY P+    L
Sbjct: 729 KNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFAL 788

Query: 518 HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRE 577
           HDV+D  K +LL  HSEKLAL +G++   PG PIRI KNLR CGDCHS   + S I   E
Sbjct: 789 HDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHE 848

Query: 578 TIVRDLNRFHHFTNGSCSCWDFW 600
            IVRD +RFHHF NGSCSC  +W
Sbjct: 849 IIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 201/414 (48%), Gaps = 49/414 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C    +   G   HA +   G   +    N L++ Y +CG    AR+VFDEM
Sbjct: 147 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 206

Query: 95  PQRCI---VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            +R +   VSWN+I+ +Y   G    A+ +F  M  +        ++ +VL ACA+    
Sbjct: 207 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 266

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-------------- 197
              KQ+H +AL++ +  +VFVG A++D+YAKCG++ +A++VFE M               
Sbjct: 267 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 326

Query: 198 ---------------------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
                                E N VTWS+++AG+ Q  L  EAL +FR+  + G E N 
Sbjct: 327 SQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNV 386

Query: 237 FTISSVICACAGLAALIQGKQV--HAV-----LCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            T+ S++  CA    L+ GK+   HA+     L +   G ++   ++L+DMY+KC     
Sbjct: 387 VTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 446

Query: 290 AYFVFSGIEEKN--VVLWNTMISGFSRHARSVEVMILFEKMQQAG--LHPNEQTYISVLS 345
           A  +F  I  K+  VV W  +I G ++H  + E + LF +M Q    + PN  T    L 
Sbjct: 447 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 506

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           AC+ +G +  G+     +++       +F  +C+ID+  ++G +  A  +  NM
Sbjct: 507 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM 560



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+ ++   V     E+ L L+RR Q LG   + +T   V+ AC  + +   G  VHAV+ 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV---VLWNTMISGFSRHARSVE 320
            +GF  N+F  + LV MY +CG   +A  VF  + E+ V   V WN++++ + +   S+ 
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 321 VMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            M +FE+M +  G+ P+  + ++VL AC+ +G   +GK      ++   +  +VF  + +
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFEDVFVGNAV 291

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +D+  + G++ EA  +   M      S W +++
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVKDVVS-WNAMV 323


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 338/559 (60%), Gaps = 19/559 (3%)

Query: 52  GKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++  A ++  M    D +T   +I  Y + G +  AR +FDEMP+R +VSW T+I  Y 
Sbjct: 236 GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +   A  LF  M  + +  ++        C       + E  +L      A   ++V
Sbjct: 296 QNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCG-----RLDEASEL----FNAMPIKSV 346

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
               A++  + + G +  A +VF+ M E++E TWS+M+  + +  L  +AL LFR  Q  
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE 406

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  N  ++ SV+  CAGLA L  G+++HA L ++ F  +++ AS L+ MY KCG +  A
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF     K+VV+WN++I+G+++H   VE + +F  M  +G+ P++ T++ VLSACS+ 
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G V+KG   F+ M  ++ V   + HY+CM+D+LGRAG ++EA DLI  MP +A A +WG+
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +CR +  L+LAE+AAK+L  +EP NAG  +LLSNIYA+  RW++VA  R+ +RD  V
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646

Query: 471 KKEKSKSWVEIKGK---------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            K    SW+ ++ K           HP  +EI   LE L   +++ GY P+    LHDV+
Sbjct: 647 SKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVD 706

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K + L +HSEKLA+ +GL+ +  G+PIR+MKNLR+CGDCH+ +K  +++ GRE I+R
Sbjct: 707 EEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILR 766

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF +GSCSC D+W
Sbjct: 767 DANRFHHFKDGSCSCRDYW 785



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 176/409 (43%), Gaps = 75/409 (18%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           +N  ++ N LI  YS+ G I  AR VFDEM  + I+SWN+I+  Y  N R QEA  +F  
Sbjct: 95  SNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDK 154

Query: 125 MLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M       ++      +      + R+VF+             +RNV   TA++  Y K 
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFD----------RMPERNVVSWTAMVRGYVKE 204

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF---------RRAQVLG--- 231
           G+IS+A  +F  MPE+N V+W+ M+ G +Q    +EA  LF          R  ++G   
Sbjct: 205 GMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYC 264

Query: 232 ---------LEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDM 280
                    + +++    +V+     +   +Q +QV     L +     N  + ++++  
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKG 324

Query: 281 YAKCG-------------------C------------VVDAYFVFSGIEEKNVVLWNTMI 309
           Y  CG                   C            V  A  VF  + EK+   W+ MI
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMI 384

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
             + R    ++ + LF  MQ+ G+ PN  + ISVLS C+ +  ++ G+     +V+    
Sbjct: 385 KVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD 444

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA----SMWGSLLAS 414
           L +V+  S ++ +  + G + +A  +     FD  A     MW S++  
Sbjct: 445 L-DVYVASVLLSMYIKCGNLAKAKQV-----FDRFAVKDVVMWNSIITG 487



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 92/181 (50%), Gaps = 7/181 (3%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
             +L + L  CA       G+  HA+++    + D   +++L++ Y KCG ++ A++VFD
Sbjct: 412 FPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFD 471

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
               + +V WN+II  Y  +G   EA+ +F +M   G  P  + T   VL AC+   +V 
Sbjct: 472 RFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP-DDVTFVGVLSACSYTGNV- 529

Query: 153 ECKQLHVF---ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
             K L +F     K  +++ +     ++D+  + G +++A  + E MP E + + W +++
Sbjct: 530 -KKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588

Query: 209 A 209
            
Sbjct: 589 G 589


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 336/576 (58%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L+ CA E   V G+V H +++  G  +D      L++ Y+KCG I  A +VFD M
Sbjct: 134 TYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRM 193

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V W  +I  Y    R  +A+ LF  M  EG     E T  SV  A     D    
Sbjct: 194 LIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLG-DEITAISVASAVGQLGDGRMA 252

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H +A+      +V VG +++ +YAKCG +  A  VF+ M ERN ++W+SM++G+ QN
Sbjct: 253 ISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQN 312

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               +AL LF + Q    + N  T   ++ AC+ L +   G+++H  +  +    +    
Sbjct: 313 GRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLR 372

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           ++++DMY KCG +  A  +F+  E  E++V  WN +ISG+  H    E + LF +MQ  G
Sbjct: 373 NAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEG 432

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN+ T+ S+LSACSH G++++G+  F  M K  +V P + HY+CM+D+LGRAG ++EA
Sbjct: 433 VEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEA 491

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           + LI  +P   +  +WG+LL +CR + N EL EIAA  LF +EP++ G ++L+SNIYAA+
Sbjct: 492 FRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAAS 551

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEM 504
            +W+EV   R+ ++   +KK  + S +E            ++ P   E+Y K+E L  EM
Sbjct: 552 NKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEM 611

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K +GY P+    LHDVE   K+ LL +HSEKLA+ FG+M +  G+PI++ KNLR+C DCH
Sbjct: 612 KMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCH 671

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              KF S I GR+ IVRD NRFHHF  G CSC D+W
Sbjct: 672 WAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 197/407 (48%), Gaps = 21/407 (5%)

Query: 74  LINFYSKCGLISGARKVFD----------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           LI  YSK G +  AR +FD          + P   +   NT++ +Y   GR  EA+ L+I
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLC--NTMLRAYANAGRSYEAIDLYI 121

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M R G    + FT   VL  CA++      + +H   ++     ++FV  AL+D+YAKC
Sbjct: 122 YMQRMG-VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKC 180

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G I DA  VF+ M  R+ V W++M+  + Q E   +AL+LFR+ Q  G   ++ T  SV 
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVA 240

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            A   L        VH      GF  ++   +S+V MYAKCG V  A  VF  +EE+N +
Sbjct: 241 SAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGI 300

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN+M+SG++++ R  + + LF +MQ +   PN  T + ++SACS++G    G+   + +
Sbjct: 301 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 360

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF-DATASMWGSLLA--SCRNYRN 420
           +     +      + M D+  + G +  A ++  N    +   S W  L++      +  
Sbjct: 361 ISSKMDIDTTLRNAIM-DMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 419

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
             L   +  Q+ G+EP    N +  ++I +A      +   RK   D
Sbjct: 420 EALELFSRMQVEGVEP----NDITFTSILSACSHAGLIDEGRKCFAD 462


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 340/575 (59%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L         + G+  H   I      D   +N L++FYSK   I  A+ +FDEM
Sbjct: 246 TFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEM 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+   VS+N II  Y  NG+ +++  LF   L+        F  +++L   A + ++   
Sbjct: 306 PELDGVSYNIIITGYAWNGQYEKSFDLF-KRLQGTSFDRKNFPFATMLSVAAIELNLSMG 364

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q H  A+       V VG AL+D+YAKC    DA+R+F ++  RN V W+++++ +VQ 
Sbjct: 365 RQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQK 424

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +EEAL +F+      +  +Q T +S + A A LA++  GKQ+H+ + + G  S++F+ 
Sbjct: 425 GFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSG 484

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S LVDMYA CG + DA  VF  + ++N+V WN +IS +S++  +      F  M ++GL+
Sbjct: 485 SVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLY 544

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  +++SVL+ACSH G+VEK   YF+ M + + + P   HY+ MID+L R+G  +EA +
Sbjct: 545 PDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAEN 604

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANR 453
           LI  MPF+    MW S+L SCR ++N +LA+ AA QLF M+   +A  ++ +SNIYA   
Sbjct: 605 LISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAG 664

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           +WE  A+ +K +R+  VKK  + SWVEI  +        R HP+  +I  K+  LVE M 
Sbjct: 665 KWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMD 724

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K GYKP+T   L +V++  K E L +HSE+LA+ F L+    G PI IMKNLR C DCH+
Sbjct: 725 KEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHA 784

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  S+I GRE  VRD +RFHHF +GSCSC D+W
Sbjct: 785 AIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 187/359 (52%), Gaps = 3/359 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H+ II  G +   +  N L++ Y K   +  A ++F EMP +  VS+N +I  YT  G  
Sbjct: 166 HSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFR 225

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ LF+ M      P S FT +++L       DV   +Q+H  A+K +   ++FV  A
Sbjct: 226 EEALKLFMQMRNMDFQP-SGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANA 284

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+K   I  A  +F+ MPE + V+++ ++ G+  N  YE++  LF+R Q    +  
Sbjct: 285 LLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRK 344

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            F  ++++   A    L  G+Q HA    T   S +   ++LVDMYAKC    DA  +F+
Sbjct: 345 NFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFA 404

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  +N V W  +IS + +     E + +F++M +  +H ++ T+ S L A +++  V  
Sbjct: 405 NLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSL 464

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           GK     +++   +L +VF  S ++D+    G + +A ++   MP D     W +L+++
Sbjct: 465 GKQLHSSVIRL-GLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISA 521



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 150/282 (53%), Gaps = 1/282 (0%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +T + N++++ Y K   +  AR++F+ M  R  VSW  +IG Y+ N + +EA  L+  M 
Sbjct: 76  NTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMC 135

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R G  P    T +++L        + E  Q+H   ++     ++ V  +L+D Y K   +
Sbjct: 136 RSGVKP-DHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCL 194

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             AS++F  MP ++ V+++ M+ G+ +    EEAL LF + + +  + + FT ++++   
Sbjct: 195 DIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMS 254

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
            G   +I G+Q+H +  KT +  ++F A++L+D Y+K   +  A  +F  + E + V +N
Sbjct: 255 VGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYN 314

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            +I+G++ + +  +   LF+++Q          + ++LS  +
Sbjct: 315 IIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAA 356



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 1/233 (0%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RN      ++  Y K   +  A  +FESM  RNEV+W+ M+ G+ QN   +EA  L+   
Sbjct: 75  RNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEM 134

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
              G++ +  T ++++        L +  Q+H+ + + GF +++   +SLVD Y K  C+
Sbjct: 135 CRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCL 194

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  +FS +  K+ V +N MI+G++++    E + LF +M+     P+  T+ ++L   
Sbjct: 195 DIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMS 254

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
                V  G+    L +K   V  ++F  + ++D   +   I  A +L   MP
Sbjct: 255 VGSEDVIFGQQIHGLAIKTSYVW-DIFVANALLDFYSKHDYIDLAKNLFDEMP 306



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 95/180 (52%), Gaps = 5/180 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + +T  +TL++ A   +   GK  H+ +I +GL +   + ++L++ Y+ CG +  A +VF
Sbjct: 445 DQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVF 504

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EMP R IV WN +I +Y+ NG  +   + F +M+  G  P S  +  SVL AC + R +
Sbjct: 505 KEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDS-VSFLSVLTAC-SHRGL 562

Query: 152 FECKQLHVFALKAA--MDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
            E    +  ++     +D        ++DV  + G  ++A  +   MP E +EV WSS++
Sbjct: 563 VEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVL 622


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 338/559 (60%), Gaps = 19/559 (3%)

Query: 52  GKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++  A ++  M    D +T   +I  Y + G +  AR +FDEMP+R +VSW T+I  Y 
Sbjct: 236 GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +   A  LF  M  + +  ++        C       + E  +L      A   ++V
Sbjct: 296 QNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCG-----RLDEASEL----FNAMPIKSV 346

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
               A++  + + G +  A +VF+ M E++E TWS+M+  + +  L  +AL LFR  Q  
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE 406

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  N  ++ SV+  CAGLA L  G+++HA L ++ F  +++ AS L+ MY KCG +  A
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF     K+VV+WN++I+G+++H   VE + +F  M  +G+ P++ T++ VLSACS+ 
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G V+KG   F+ M  ++ V   + HY+CM+D+LGRAG ++EA DLI  MP +A A +WG+
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +CR +  L+LAE+AAK+L  +EP NAG  +LLSNIYA+  RW++VA  R+ +RD  V
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646

Query: 471 KKEKSKSWVEIKGK---------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            K    SW+ ++ K           HP  +EI   LE L   +++ GY P+    LHDV+
Sbjct: 647 SKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVD 706

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K + L +HSEKLA+ +GL+ +  G+PIR+MKNLR+CGDCH+ +K  +++ GRE I+R
Sbjct: 707 EEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILR 766

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF +GSCSC D+W
Sbjct: 767 DANRFHHFKDGSCSCRDYW 785



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 176/409 (43%), Gaps = 75/409 (18%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           +N  ++ N LI  YS+ G I  AR VFDEM  + I+SWN+I+  Y  N R QEA  +F  
Sbjct: 95  SNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDK 154

Query: 125 MLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M       ++      +      + R+VF+             +RNV   TA++  Y K 
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFD----------RMPERNVVSWTAMVRGYVKE 204

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF---------RRAQVLG--- 231
           G+IS+A  +F  MPE+N V+W+ M+ G +Q    +EA  LF          R  ++G   
Sbjct: 205 GMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYC 264

Query: 232 ---------LEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDM 280
                    + +++    +V+     +   +Q +QV     L +     N  + ++++  
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKG 324

Query: 281 YAKCG-------------------C------------VVDAYFVFSGIEEKNVVLWNTMI 309
           Y  CG                   C            V  A  VF  + EK+   W+ MI
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMI 384

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
             + R    ++ + LF  MQ+ G+ PN  + ISVLS C+ +  ++ G+     +V+    
Sbjct: 385 KVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD 444

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA----SMWGSLLAS 414
           L +V+  S ++ +  + G + +A  +     FD  A     MW S++  
Sbjct: 445 L-DVYVASVLLSMYIKCGNLAKAKQV-----FDRFAVKDVVMWNSIITG 487



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 92/181 (50%), Gaps = 7/181 (3%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
             +L + L  CA       G+  HA+++    + D   +++L++ Y KCG ++ A++VFD
Sbjct: 412 FPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFD 471

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
               + +V WN+II  Y  +G   EA+ +F +M   G  P  + T   VL AC+   +V 
Sbjct: 472 RFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP-DDVTFVGVLSACSYTGNV- 529

Query: 153 ECKQLHVF---ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
             K L +F     K  +++ +     ++D+  + G +++A  + E MP E + + W +++
Sbjct: 530 -KKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588

Query: 209 A 209
            
Sbjct: 589 G 589


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 337/553 (60%), Gaps = 12/553 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA++    L  D    + L+  Y+K G    A K+FD+MP + +VSWN++I  ++     
Sbjct: 62  HARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--L 119

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             ++  F  M  E     +E T+ S++ AC    D    K +H F +K      V V  +
Sbjct: 120 HMSLTAFYTMKFEMSVKPNEVTILSMISACNGALDA--GKYIHGFGIKVGGTLEVKVANS 177

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++Y K G ++ A R+FE++P+ N V+W+S++A  V N    E +  F + + LG+E +
Sbjct: 178 LINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQD 237

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           + TI +++ AC  L      + +H ++  TGFG+ +  A++L+D YAK G +  +Y VF+
Sbjct: 238 EGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFT 297

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +   + V W  M++G++ H    E + LFE M   GL P+  T+  +LSACSH G+V +
Sbjct: 298 EVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNE 357

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GKSYF++M + + + P V HYSCM+D+LGR GL+++AY++I NMP +  A +WG+LL +C
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGAC 417

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R + N+EL +  A+ L  MEP +  N+++LSN+Y+A+R W++ A+ R L+++  +K+   
Sbjct: 418 RVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPG 477

Query: 476 KSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S +E          G R+HP   +IYSKLE+L+ +++K GY  +TE+ L DVE+  K++
Sbjct: 478 YSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKED 537

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           ++  HSEKLA+ FGL+    G  + I KNLRICGDCHS  K  S I  R  I+RD  RFH
Sbjct: 538 MINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFH 597

Query: 588 HFTNGSCSCWDFW 600
           HF++G CSC D+W
Sbjct: 598 HFSDGFCSCADYW 610



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 182/359 (50%), Gaps = 21/359 (5%)

Query: 94  MPQRCIVSWNT-IIGSYTTNGREQEAVALF--INMLREGKTPYSEFTVSSVLCACAAKRD 150
           MP R    WN+ I+ ++    R Q  + L    +++R+  TP  E  VS++L A  +   
Sbjct: 1   MPLR----WNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATP--EAIVSALLIAVNSCPS 54

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +  C+++H    K+ + R+ F+G  L+  Y K G   DA ++F+ MP ++ V+W+S+++G
Sbjct: 55  ISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISG 114

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           F +  L+      +     + ++ N+ TI S+I AC G  AL  GK +H    K G    
Sbjct: 115 FSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACNG--ALDAGKYIHGFGIKVGGTLE 171

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +  A+SL++MY K G +  A  +F  I + N V WN++I+    +  + E +  F KM++
Sbjct: 172 VKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRR 231

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+  +E T +++L AC H+G+ +  +S   LM         +   + ++D   + G + 
Sbjct: 232 LGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITIATALLDTYAKLGRLS 290

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNY----RNLELAEIAAKQLFGMEPDNAG-NHLL 444
            +Y +   + F A    W ++LA    +      ++L E  A +  G+EPD+    HLL
Sbjct: 291 ASYGVFTEVGF-ADRVAWTAMLAGYAAHGLGREAIKLFESMANK--GLEPDHVTFTHLL 346



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 3/267 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H   I +G   +   +N LIN Y K G ++ A ++F+ +P    VSWN+II +  T
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVT 215

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG  +E +  F  M R G     E T+ ++L AC         + +H           + 
Sbjct: 216 NGCAREGIDYFNKMRRLG-IEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKIT 274

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           + TALLD YAK G +S +  VF  +   + V W++M+AG+  + L  EA+ LF      G
Sbjct: 275 IATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKG 334

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA 290
           LE +  T + ++ AC+    + +GK    V+ +  G    +   S +VD+  +CG + DA
Sbjct: 335 LEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDA 394

Query: 291 YFVFSGIE-EKNVVLWNTMISGFSRHA 316
           Y V   +  E N  +W  ++     H 
Sbjct: 395 YEVIQNMPMEPNAGVWGALLGACRVHG 421



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ A LQ+C         +  H  +   G       +  L++ Y+K G +S +  VF E+
Sbjct: 240 TILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEV 299

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                V+W  ++  Y  +G  +EA+ LF +M  +G  P    T + +L AC+    V E 
Sbjct: 300 GFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEP-DHVTFTHLLSACSHSGLVNEG 358

Query: 155 KQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           K   +V +    ++  V   + ++D+  +CGL++DA  V ++MP E N   W +++ 
Sbjct: 359 KSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLG 415


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/580 (38%), Positives = 347/580 (59%), Gaps = 21/580 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI---LINFYSKCGLISGARKV 90
           ST    ++ CA  +     +  H+ ++  G +   LT N+   L + YSKCG ++ A  +
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFH---LTGNVMTALADAYSKCGELADALNI 359

Query: 91  FD-EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           F      R +VSW  II     NG    AV LF  M RE +   +EFT S++L A  +  
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM-REDRVMPNEFTYSAMLKASLS-- 416

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
                 Q+H   +K        VGTALL  Y+K G   DA  +F+ + +++ V WS+M++
Sbjct: 417 --ILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLS 474

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFG 268
              Q    E A  LF +  + G++ N+FTISSVI ACA  +A + QG+Q HA+  K  + 
Sbjct: 475 CHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYH 534

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
             +  +S+LV MY++ G +  A  VF    ++++V WN+MISG+++H  S++ +  F +M
Sbjct: 535 DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQM 594

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           + +G+  +  T+++V+  C+H G+V +G+ YFD MV+ H + P + HY+CM+D+  RAG 
Sbjct: 595 EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGK 654

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + E   LI +MPF A A +W +LL +CR ++N+EL + +A +L  +EP ++  ++LLSNI
Sbjct: 655 LDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNI 714

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKL 500
           YAA  +W+E    RKL+   +VKKE   SW++IK K        ++HP   +IY KL+ +
Sbjct: 715 YAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVI 774

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
           +  +K+ GY P T   LHD+ + +K+ +L+ HSE+LAL FGL+   PG P++I+KNLR+C
Sbjct: 775 ITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVC 834

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCH  MK  S I  RE I+RD +RFHHF  G+CSC DFW
Sbjct: 835 GDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 181/344 (52%), Gaps = 6/344 (1%)

Query: 86  GARKVFDEMPQR-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
           GAR   DE+P+R   V  N ++  Y   G   E +  F ++ R G       T+S VL A
Sbjct: 50  GARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQF-SVARRGGVLVDSATLSCVLKA 108

Query: 145 CAAKRDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           C +  D    +QLH   +K   DR  V  GT+L+D+Y KCG + +   VFE MP++N VT
Sbjct: 109 CRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVT 168

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+S++ G    +++ E + LF R +  G+  N FT +SV+ A A   AL  G++VHA   
Sbjct: 169 WTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSV 228

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           K G  S++F  +SL++MYAKCG V DA  VF+ +E +++V WNT+++G   +   +E + 
Sbjct: 229 KFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQ 288

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDI 382
           LF + +       + TY +V+  C+++  +   +     ++K   ++  NV   + + D 
Sbjct: 289 LFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TALADA 346

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             + G + +A ++            W ++++ C    ++ LA +
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 173/315 (54%), Gaps = 3/315 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI-LINFYSKCGLISGARKVFD 92
           +TL   L++C      V G+  H   +  G +   +++   L++ Y KCG +    +VF+
Sbjct: 100 ATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFE 159

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            MP++ +V+W +++          E +ALF  M  EG  P + FT +SVL A A++  + 
Sbjct: 160 GMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWP-NPFTFASVLSAVASQGALD 218

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +++H  ++K     +VFV  +L+++YAKCGL+ DA  VF  M  R+ V+W++++AG  
Sbjct: 219 LGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQ 278

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            NE   EAL LF  ++    +  Q T ++VI  CA L  L   +Q+H+ + K GF     
Sbjct: 279 LNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN 338

Query: 273 AASSLVDMYAKCGCVVDAYFVFS-GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             ++L D Y+KCG + DA  +FS     +NVV W  +ISG  ++      ++LF +M++ 
Sbjct: 339 VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRED 398

Query: 332 GLHPNEQTYISVLSA 346
            + PNE TY ++L A
Sbjct: 399 RVMPNEFTYSAMLKA 413



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 9/381 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L + A + A   G+  HA+ +  G  +     N L+N Y+KCGL+  A+ VF+ M
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWNT++     N  E EA+ LF +  R      ++ T ++V+  CA  + +   
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLF-HESRATMGKMTQSTYATVIKLCANLKQLALA 321

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE-SMPERNEVTWSSMVAGFVQ 213
           +QLH   LK        V TAL D Y+KCG ++DA  +F  +   RN V+W+++++G +Q
Sbjct: 322 RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQ 381

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     A++LF R +   +  N+FT S+++ A    +  I   Q+HA + KT +      
Sbjct: 382 NGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA----SLSILPPQIHAQVIKTNYQHIPSV 437

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+  Y+K G   DA  +F  IE+K+VV W+ M+S  ++         LF KM   G+
Sbjct: 438 GTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGI 497

Query: 334 HPNEQTYISVLSACS-HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            PNE T  SV+ AC+     V++G+ +  + +K +     +   S ++ +  R G I  A
Sbjct: 498 KPNEFTISSVIDACACPSAGVDQGRQFHAISIK-YRYHDAICVSSALVSMYSRKGNIDSA 556

Query: 393 YDLILNMPFDATASMWGSLLA 413
             ++     D     W S+++
Sbjct: 557 -QIVFERQTDRDLVSWNSMIS 576


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 331/558 (59%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA  +  G + D    N +++FYSK   +   R +FDEMP+   VS+N +I SY+ 
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
             + + ++  F  M   G      F  +++L   A    +   +QLH  AL A  D  + 
Sbjct: 329 ADQYEASLHFFREMQCMG-FDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH 387

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG +L+D+YAKC +  +A  +F+S+P+R  V+W+++++G+VQ  L+   L LF + +   
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L  +Q T ++V+ A A  A+L+ GKQ+HA + ++G   N+F+ S LVDMYAKCG + DA 
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + ++N V WN +IS  + +      +  F KM ++GL P+  + + VL+ACSH G
Sbjct: 508 QVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCG 567

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            VE+G  YF  M   + + P   HY+CM+D+LGR G   EA  L+  MPF+    MW S+
Sbjct: 568 FVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSV 627

Query: 412 LASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           L +CR ++N  LAE AA++LF ME   +A  ++ +SNIYAA   WE+V   +K +R+  +
Sbjct: 628 LNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGI 687

Query: 471 KKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           KK  + SWVE+  K        + HP   EI  K+ +L  E+++ GYKP+T   + DV++
Sbjct: 688 KKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDE 747

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K E L +HSE+LA+ F L+    G PI +MKNLR C DCH+ +K  S+I  RE  VRD
Sbjct: 748 QMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRD 807

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFHHF+ G CSC D+W
Sbjct: 808 TSRFHHFSEGVCSCGDYW 825



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 205/391 (52%), Gaps = 8/391 (2%)

Query: 52  GKVCHAKIIGMGLNNDTL--TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           G+V HA  + +G + +     SN+L+  Y +   +  A  +F+E+P++  V++NT+I  Y
Sbjct: 167 GQV-HAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGY 225

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +G   E++ LF+ M + G  P S+FT S VL A     D    +QLH  ++     R+
Sbjct: 226 EKDGLYTESIHLFLKMRQSGHQP-SDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRD 284

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
             VG  +LD Y+K   + +   +F+ MPE + V+++ +++ + Q + YE +L  FR  Q 
Sbjct: 285 ASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQC 344

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           +G +   F  ++++   A L++L  G+Q+H         S +   +SLVDMYAKC    +
Sbjct: 345 MGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEE 404

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  +F  + ++  V W  +ISG+ +       + LF KM+ + L  ++ T+ +VL A + 
Sbjct: 405 AELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASAS 464

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
              +  GK     +++  N L NVF  S ++D+  + G I +A  +   MP D  A  W 
Sbjct: 465 FASLLLGKQLHAFIIRSGN-LENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWN 522

Query: 410 SLLASCRNYRNLELAEIAAKQLF--GMEPDN 438
           +L+++  +  + E A  A  ++   G++PD+
Sbjct: 523 ALISAHADNGDGEAAIGAFAKMIESGLQPDS 553



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 188/370 (50%), Gaps = 12/370 (3%)

Query: 51  RGKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           RG+V  A K+     + +T+++N +I+ + K G +S AR +FD MP R +V+W  ++G Y
Sbjct: 61  RGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWY 120

Query: 110 TTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
             N    EA  LF  M R    T     T +++L  C          Q+H FA+K   D 
Sbjct: 121 ARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDT 180

Query: 169 NVF--VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           N F  V   LL  Y +   +  A  +FE +PE++ VT+++++ G+ ++ LY E++ LF +
Sbjct: 181 NPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLK 240

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            +  G + + FT S V+ A  GL     G+Q+HA+   TGF  +    + ++D Y+K   
Sbjct: 241 MRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDR 300

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           V++   +F  + E + V +N +IS +S+  +    +  F +MQ  G       + ++LS 
Sbjct: 301 VLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360

Query: 347 CSHIGMVEKGKSYF--DLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLILNMPFDA 403
            +++  ++ G+      L+    ++L    H  + ++D+  +  +  EA  +  ++P   
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSIL----HVGNSLVDMYAKCEMFEEAELIFKSLPQRT 416

Query: 404 TASMWGSLLA 413
           T S W +L++
Sbjct: 417 TVS-WTALIS 425



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    L++ A   + + GK  HA II  G   +  + + L++ Y+KCG I  A +VF+E
Sbjct: 453 STFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE 512

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA------A 147
           MP R  VSWN +I ++  NG  + A+  F  M+  G  P S  ++  VL AC+       
Sbjct: 513 MPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS-VSILGVLTACSHCGFVEQ 571

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
             + F+     ++ +             +LD+  + G  ++A ++ + MP E +E+ WSS
Sbjct: 572 GTEYFQAMS-PIYGITPKKKHYA----CMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSS 626

Query: 207 MV 208
           ++
Sbjct: 627 VL 628


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 344/575 (59%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCAR-ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            T+ + L++C+  E         HA  +  G+  D+  S  LI+ YSK G +  A  +F  
Sbjct: 1038 TVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVN 1097

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                 + SWN I+  Y  +G   +A+ L+I M   G+    + T+ +   A      + +
Sbjct: 1098 QDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERS-DQITLVNAAKAAGGLVGLKQ 1156

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             KQ+H   +K   + ++FV + +LD+Y KCG +  A RVF  +P  ++V W++M++G V+
Sbjct: 1157 GKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVE 1216

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N   E AL  + + ++  ++ +++T ++++ AC+ L AL QG+Q+HA + K     + F 
Sbjct: 1217 NGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV 1276

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             +SLVDMYAKCG + DA  +F     + +  WN MI G ++H  + E +  F+ M+  G+
Sbjct: 1277 MTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGV 1336

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P+  T+I VLSACSH G+V +    F  M K + + P + HYSC++D L RAG I EA 
Sbjct: 1337 MPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAE 1396

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             +I +MPF+A+ASM+ +LL +CR   + E  +  A++L  +EP ++  ++LLSN+YAA  
Sbjct: 1397 KVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAAN 1456

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            +WE VA AR ++R   VKK+   SWV++K        G R+H     IY+K+E +++ ++
Sbjct: 1457 QWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIR 1516

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            + GY P+T+  L DVE+  K+  L +HSEKLA+ +GLM   P   +R++KNLR+CGDCHS
Sbjct: 1517 EEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHS 1576

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +K+ S++  RE ++RD NRFHHF NG CSC D+W
Sbjct: 1577 AIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 206/370 (55%), Gaps = 4/370 (1%)

Query: 52   GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            GK  H  ++  GL+      N LIN Y K G +S AR VF +M +  ++SWNT+I   T 
Sbjct: 954  GKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTL 1013

Query: 112  NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA-KRDVFECKQLHVFALKAAMDRNV 170
            +G E+ +V +F+++LR+   P  +FTV+SVL AC++ +   +   Q+H  A+KA +  + 
Sbjct: 1014 SGLEECSVGMFVHLLRDSLLP-DQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDS 1072

Query: 171  FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            FV TAL+DVY+K G + +A  +F +    +  +W++++ G++ +  + +AL L+   Q  
Sbjct: 1073 FVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQES 1132

Query: 231  GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            G   +Q T+ +   A  GL  L QGKQ+HAV+ K GF  ++F  S ++DMY KCG +  A
Sbjct: 1133 GERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESA 1192

Query: 291  YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
              VFS I   + V W TMISG   + +    +  + +M+ + + P+E T+ +++ ACS +
Sbjct: 1193 RRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLL 1252

Query: 351  GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
              +E+G+     +VK  N   + F  + ++D+  + G I +A  L         AS W +
Sbjct: 1253 TALEQGRQIHANIVKL-NCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIAS-WNA 1310

Query: 411  LLASCRNYRN 420
            ++     + N
Sbjct: 1311 MIVGLAQHGN 1320



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 172/388 (44%), Gaps = 39/388 (10%)

Query: 30   ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
            +T   TL    + C    +P   +  H   + +GL  D   +  L+N Y+K GLI  AR 
Sbjct: 757  STTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARV 816

Query: 90   VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
            +FD M  R +V WN ++ +Y     E EA+ LF    R G  P  + T+ ++      K+
Sbjct: 817  LFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRP-DDVTLRTLSRVVKCKK 875

Query: 150  DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            ++ E KQ   +A K  M  +                  D S V         + W+  ++
Sbjct: 876  NILELKQFKAYATKLFMYDD------------------DGSDV---------IVWNKALS 908

Query: 210  GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
             F+Q     EA+  F       +  +  T   ++   AGL  L  GKQ+H ++ ++G   
Sbjct: 909  RFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQ 968

Query: 270  NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
             +   + L++MY K G V  A  VF  + E +++ WNTMISG +        + +F  + 
Sbjct: 969  VVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLL 1028

Query: 330  QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK----QHNVLPNVFHYSCMIDILGR 385
            +  L P++ T  SVL ACS +    +G  Y    +     +  V+ + F  + +ID+  +
Sbjct: 1029 RDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSK 1084

Query: 386  AGLIHEAYDLILNMP-FDATASMWGSLL 412
             G + EA  L +N   FD  +  W +++
Sbjct: 1085 RGKMEEAEFLFVNQDGFDLAS--WNAIM 1110



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 168/367 (45%), Gaps = 33/367 (8%)

Query: 52   GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSY 109
            GK  HA+I+  G + D   +N LI  Y+KCG +S ARK+FD  P   R +V+WN I+ + 
Sbjct: 675  GKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSAL 734

Query: 110  TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
              +  +         +LR      +  T++ V   C         + LH +A+K  +  +
Sbjct: 735  AAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWD 794

Query: 170  VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            VFV  AL+++YAK GLI +A  +F+ M  R+ V W+ M+  +V   L  EA++LF     
Sbjct: 795  VFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHR 854

Query: 230  LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             G   +  T+ ++         +++ KQ  A      + + +F       MY   G    
Sbjct: 855  TGFRPDDVTLRTLSRVVKCKKNILELKQFKA------YATKLF-------MYDDDG---- 897

Query: 290  AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
                       +V++WN  +S F +   + E +  F  M  + +  +  T++ +L+  + 
Sbjct: 898  ----------SDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAG 947

Query: 350  IGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
            +  +E GK    ++++    L  V    +C+I++  +AG +  A  +   M  +     W
Sbjct: 948  LNCLELGKQIHGIVMRSG--LDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EVDLISW 1004

Query: 409  GSLLASC 415
             ++++ C
Sbjct: 1005 NTMISGC 1011



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 3/203 (1%)

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           S+L    A  D+   K+ H   L +    + FV   L+ +YAKCG +S A ++F++ P+ 
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 200 NE--VTWSSMVAGFVQN-ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           N   VTW+++++    + +   +   LFR  +   +   + T++ V   C   A+    +
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
            +H    K G   ++F A +LV++YAK G + +A  +F G+  ++VVLWN M+  +    
Sbjct: 781 SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 317 RSVEVMILFEKMQQAGLHPNEQT 339
              E M+LF +  + G  P++ T
Sbjct: 841 LEYEAMLLFSEFHRTGFRPDDVT 863


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 345/576 (59%), Gaps = 10/576 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            +L+TL + L +CA       G+  H   +    + + + SN L++ YSKCG ++GA +V
Sbjct: 294 VDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 353

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F +M    IVSW +II +Y   G   +A+ LF  M  +G  P   +TV+S++ ACA    
Sbjct: 354 FVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRP-DIYTVTSIVHACACSSS 412

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + + + +H + +K  M  N+ V  AL+++YAKCG + +A  VF  +P ++ V+W++M+ G
Sbjct: 413 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 472

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN L  EAL LF   Q    + +  T++ V+ ACAGLAAL +G+++H  + + G+ S+
Sbjct: 473 YSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSD 531

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +  A +LVDMYAKCG +V A  +F  I +K+++ W  MI+G+  H    E +  F +M+ 
Sbjct: 532 LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRI 591

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ P+E ++ ++L+ACSH G++ +G  +F+ M  +  V P + HY+C++D+L R G + 
Sbjct: 592 AGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLS 651

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +AY  I +MP     ++WG LL+ CR + +++LAE  A+ +F +EPDN   +++L+N+YA
Sbjct: 652 KAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYA 711

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
              +WEEV + RK ++    K+    SW+E+ GK N        HP+  +I   L KL  
Sbjct: 712 EAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTM 771

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           +M+   Y     + L + +D  K+ +   HSEK A+ FG++ L PG  +R+ KN R+CGD
Sbjct: 772 QMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGD 831

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
           CH   KF S+    E ++RD NRFHHF +G CSC D
Sbjct: 832 CHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 197/381 (51%), Gaps = 3/381 (0%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L++  + LQ CA +++   GK  H+ II  G++ D      L+  Y  CG +   RK+FD
Sbjct: 94  LNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFD 153

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           ++    +  WN ++  Y   G  +E+V+LF  M + G      +T + VL   AA   V 
Sbjct: 154 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNC-YTFTCVLKCFAALGKVK 212

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           ECK++H + LK     N  V  +L+  Y K G +  A  +F+ + E + V+W+SM+ G V
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 272

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            N      L +F +  +LG+E +  T+ SV+ ACA +  L  G+ +H    K  F   + 
Sbjct: 273 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVV 332

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +++L+DMY+KCG +  A  VF  + +  +V W ++I+ + R     + + LF++MQ  G
Sbjct: 333 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG 392

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T  S++ AC+    ++KG+     ++K + +  N+   + +I++  + G + EA
Sbjct: 393 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEA 451

Query: 393 YDLILNMPFDATASMWGSLLA 413
             +   +P     S W +++ 
Sbjct: 452 RLVFSKIPVKDIVS-WNTMIG 471


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 329/584 (56%), Gaps = 44/584 (7%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA +   GL++  + +  L   Y+  G +  +  +F       +  W  II  +   G  
Sbjct: 50  HAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLH 109

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           ++A+  +  ML +G  P + FT SS+L  C  +      K LH  A+K   D +++V T 
Sbjct: 110 EQALNFYAQMLTQGVEP-NAFTFSSILKLCPIE----PGKALHSQAVKLGFDSDLYVRTG 164

Query: 176 LLDVYAKCGLISDASRVFESMPE-------------------------------RNEVTW 204
           LLDVYA+ G +  A ++F++MPE                               R+ V W
Sbjct: 165 LLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCW 224

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           + M+ G+ QN +  EAL+LFRR      + N+ T+ SV+ AC  L AL  G+ VH+ +  
Sbjct: 225 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN 284

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            G   N+   ++LVDMY+KCG + DA  VF  I++K+VV WN+MI G++ H  S E + L
Sbjct: 285 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 344

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F+ M + GLHP   T+I +LSAC H G V +G   F+ M  ++ + P + HY CM+++LG
Sbjct: 345 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLG 404

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG + +AY+L+ NM  +    +WG+LL +CR +  + L E   + L      N+G ++L
Sbjct: 405 RAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL 464

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
           LSNIYAA   W+ VAR R +++DS VKKE   S +E+         G  NHP+  EIY  
Sbjct: 465 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMM 524

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           LE++   +K  GY P+T+  LHD+ ++ K+  L  HSEKLA+ FGL+   PG  I+I+KN
Sbjct: 525 LEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKN 584

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+C DCH   K  S+I GR+ +VRD NRFHHF NGSCSC D+W
Sbjct: 585 LRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 162/350 (46%), Gaps = 39/350 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L+ C  E     GK  H++ + +G ++D      L++ Y++ G +  A+++FD M
Sbjct: 130 TFSSILKLCPIEP----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 185

Query: 95  PQRCIVS-------------------------------WNTIIGSYTTNGREQEAVALFI 123
           P++ +VS                               WN +I  YT NG   EA+ LF 
Sbjct: 186 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFR 245

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            ML+    P +E TV SVL AC     +   + +H +     +  NV VGTAL+D+Y+KC
Sbjct: 246 RMLKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 304

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA  VF+ + +++ V W+SM+ G+  +   +EAL LF+    +GL     T   ++
Sbjct: 305 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 364

Query: 244 CACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKN 301
            AC     + +G  + + +  + G    +     +V++  + G V  AY +   +  E +
Sbjct: 365 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 424

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VLW T++     H +      + E +    L  N  TYI + +  + +G
Sbjct: 425 PVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYILLSNIYAAVG 473



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 37/290 (12%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H    +  +D +  +   L   YA  G +  +  +F      +   W++++ G     
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           L+E+AL  + +    G+E N FT SS++  C     +  GK +H+   K GF S+++  +
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRT 163

Query: 276 SLVDMYAKCGCVVDAY-------------------------------FVFSGIEEKNVVL 304
            L+D+YA+ G VV A                                 +F G+EE++ V 
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN MI G++++    E ++LF +M +A   PNE T +SVLSAC  +G +E G+ +    +
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR-WVHSYI 282

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           + + +  NV   + ++D+  + G + +A  L+ +   D     W S++  
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWNSMIVG 331



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A A   E++ L + L +C +  A   G+  H+ I   G+  +      L++ YSKCG + 
Sbjct: 250 AKAKPNEVTVL-SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 308

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            AR VFD++  + +V+WN++I  Y  +G  QEA+ LF +M R G  P +  T   +L AC
Sbjct: 309 DARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHP-TNITFIGILSAC 367

Query: 146 AAKR------DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-E 198
                     D+F  K    + ++  ++        ++++  + G +  A  + ++M  E
Sbjct: 368 GHSGWVTEGWDIFN-KMKDEYGIEPKIEHY----GCMVNLLGRAGHVEQAYELVKNMNIE 422

Query: 199 RNEVTWSSMVA 209
            + V W +++ 
Sbjct: 423 PDPVLWGTLLG 433


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/545 (38%), Positives = 322/545 (59%), Gaps = 18/545 (3%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + D +    +++ Y + G I+ AR +FDEMP+R +VSW  +I  Y  NG    A  LF  
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEV 230

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M    +  ++   V  +         V +  +L      A  +  V    A++  + + G
Sbjct: 231 MPERNEVSWTAMLVGYIQAG-----HVEDAAEL----FNAMPEHPVAACNAMMVGFGQRG 281

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
           ++  A  VFE M ER++ TWS+M+  + QNE   EAL  FR     G+  N  ++ S++ 
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            CA LA L  G++VHA + +  F  ++FA S+L+ MY KCG +  A  VF   E K++V+
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN+MI+G+++H    + + +F  M+ AG+ P+  TYI  L+ACS+ G V++G+  F+ M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
              ++ P   HYSCM+D+LGR+GL+ EA+DLI NMP +  A +WG+L+ +CR +RN E+A
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIA 521

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK 484
           E AAK+L  +EP NAG ++LLS+IY +  RWE+ ++ RK I    + K    SW+E   +
Sbjct: 522 EFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKR 581

Query: 485 RN---------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
            +         HP  A I   LEKL   + + GY  +    LHD+++ +K   L +HSE+
Sbjct: 582 VHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSER 641

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
            A+ +GL+ +  G+PIR+MKNLR+CGDCHS +K  ++I  RE I+RD NRFHHF +G CS
Sbjct: 642 QAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCS 701

Query: 596 CWDFW 600
           C D+W
Sbjct: 702 CRDYW 706



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 37/306 (12%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N  I   ++ G I GAR  F+ MP R   S+N ++  Y  N     A+ LF  M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
            Y     ++++   + +R         + ++      +V   T+LL  Y + GL++DA R
Sbjct: 81  SY-----NALISGLSLRRQTLPDAAAALASIP--FPPSVVSFTSLLRGYVRHGLLADAIR 133

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +F+ MPERN V+++ ++ G +      EA  LF          ++     V+   A L+ 
Sbjct: 134 LFQQMPERNHVSYTVLLGGLLDAGRVNEARRLF----------DEMPDRDVVAWTAMLSG 183

Query: 252 LIQGKQVHA--VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             Q  ++     L       N+ + ++++  YA+ G V  A  +F  + E+N V W  M+
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAML 243

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI-------GMVEKGKSYFDL 362
            G+ +     +   LF  M +   HP        ++AC+ +       GMV+  K+ F+ 
Sbjct: 244 VGYIQAGHVEDAAELFNAMPE---HP--------VAACNAMMVGFGQRGMVDAAKTVFEK 292

Query: 363 MVKQHN 368
           M ++ +
Sbjct: 293 MCERDD 298



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 22/259 (8%)

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           A+ G I  A   FE+MP R   ++++++AG+ +N L + AL LFRR     L      IS
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 241 SVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
                  GL+   Q      A L    F  ++ + +SL+  Y + G + DA  +F  + E
Sbjct: 88  -------GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           +N V +  ++ G     R  E   LF++M    +      + ++LS     G + + ++ 
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDV----VAWTAMLSGYCQAGRITEARAL 196

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FD M K+     NV  ++ MI    + G ++ A  L   MP     S W ++L       
Sbjct: 197 FDEMPKR-----NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVS-WTAMLVGYIQAG 250

Query: 420 NLELAEIAAKQLFGMEPDN 438
           ++E     A +LF   P++
Sbjct: 251 HVE----DAAELFNAMPEH 265



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 3/160 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA ++    + D    + LI  Y KCG +  A++VF     + IV WN++I  Y  
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL-HVFALKAAMDRNV 170
           +G  ++A+ +F +M   G +P    T    L AC+    V E +++ +   + +++    
Sbjct: 412 HGLGEQALGIFHDMRLAGMSP-DGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGA 470

Query: 171 FVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
              + ++D+  + GL+ +A  + ++MP E + V W +++ 
Sbjct: 471 EHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMG 510


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 344/577 (59%), Gaps = 12/577 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G+  HA ++  GL  D    N +++ Y K G +  AR VFD M
Sbjct: 126 TYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRM 185

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R + SWNT++  +  NG  + A  +F +M R+G       T+ ++L AC    D+   
Sbjct: 186 LVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVG-DRTTLLALLSACGDVMDLKVG 244

Query: 155 KQLHVFALKAAMDRNV---FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
           K++H + ++      V   F+  +++D+Y  C  +S A ++FE +  ++ V+W+S+++G+
Sbjct: 245 KEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGY 304

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            +     +AL LF R  V+G   ++ T+ SV+ AC  ++AL  G  V + + K G+  N+
Sbjct: 305 EKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNV 364

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++L+ MYA CG +V A  VF  + EKN+     M++GF  H R  E + +F +M   
Sbjct: 365 VVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGK 424

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P+E  + +VLSACSH G+V++GK  F  M + ++V P   HYSC++D+LGRAG + E
Sbjct: 425 GVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDE 484

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY +I NM       +W +LL++CR +RN++LA I+A++LF + PD    ++ LSNIYAA
Sbjct: 485 AYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAA 544

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
            RRWE+V   R L+    ++K  S S+VE+         G  +H +  +IY+KL+ L E+
Sbjct: 545 ERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQ 604

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +KK GYKP+T   L+DVE+  K+++L  HSE+LAL F L+   PG  IRI KNLR+CGDC
Sbjct: 605 LKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDC 664

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+ +K  S++  RE I+RD+ RFHHF +G CSC  +W
Sbjct: 665 HTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 194/382 (50%), Gaps = 9/382 (2%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKC 81
           S+++  ++ +  TL   LQS    ++  +    HA +   G L  +T  +  L   Y+ C
Sbjct: 15  SSTSTFDSLQCGTL---LQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVC 71

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G +  A+ +FD++  +    WN++I  Y  N     A+ L++ ML  G+ P   FT   V
Sbjct: 72  GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKP-DNFTYPFV 130

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L AC         +++H   +   ++ +V+VG ++L +Y K G +  A  VF+ M  R+ 
Sbjct: 131 LKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDL 190

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
            +W++M++GFV+N     A  +F   +  G   ++ T+ +++ AC  +  L  GK++H  
Sbjct: 191 TSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGY 250

Query: 262 LCKTGFGS---NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           + + G      N F  +S++DMY  C  V  A  +F G+  K+VV WN++ISG+ +   +
Sbjct: 251 VVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDA 310

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            + + LF +M   G  P+E T ISVL+AC+ I  +  G +    +VK+  V+ NV   + 
Sbjct: 311 FQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVV-NVVVGTA 369

Query: 379 MIDILGRAGLIHEAYDLILNMP 400
           +I +    G +  A  +   MP
Sbjct: 370 LIGMYANCGSLVCACRVFDEMP 391



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 8/259 (3%)

Query: 132 PYSEFTVSSVLCACAAK-----RDVFECKQLHVFALKAA-MDRNVFVGTALLDVYAKCGL 185
           P S  T  S+ C    +     + + +  QLH        + RN ++ T L   YA CG 
Sbjct: 14  PSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGH 73

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           +  A  +F+ +  +N   W+SM+ G+  N     AL L+ +    G + + FT   V+ A
Sbjct: 74  MPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA 133

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C  L     G++VHA++   G   +++  +S++ MY K G V  A  VF  +  +++  W
Sbjct: 134 CGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSW 193

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NTM+SGF ++  +     +F  M++ G   +  T +++LSAC  +  ++ GK     +V+
Sbjct: 194 NTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVR 253

Query: 366 --QHNVLPNVFHYSCMIDI 382
             +   + N F  + +ID+
Sbjct: 254 NGESGRVCNGFLMNSIIDM 272



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 32/232 (13%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
            + S  A  N      L AT+QS   +R  V   V    +IGM               Y+
Sbjct: 331 TVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGM---------------YA 375

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
            CG +  A +VFDEMP++ + +   ++  +  +GR +EA+++F  ML +G TP  E   +
Sbjct: 376 NCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTP-DEGIFT 434

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG------TALLDVYAKCGLISDASRVF 193
           +VL AC+    V E K++        M R+  V       + L+D+  + G + +A  V 
Sbjct: 435 AVLSACSHSGLVDEGKEIFY-----KMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVI 489

Query: 194 ESMPER-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
           E+M  + NE  W+++++      L+    +    AQ L  E N   +S  +C
Sbjct: 490 ENMKLKPNEDVWTALLSAC---RLHRNVKLAVISAQKL-FELNPDGVSGYVC 537


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/485 (43%), Positives = 305/485 (62%), Gaps = 23/485 (4%)

Query: 125 MLREGKTPYSE-FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           ML  G  P    F  ++  C   ++ D+   + +H FA+K   D +VFVG++++D+YAKC
Sbjct: 1   MLDNGVRPDDHIFPSATKACGILSRCDI--GQSVHSFAVKTGYDCDVFVGSSMVDMYAKC 58

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G I DA ++F+ MP+RN V+WS M+ G+ Q    EEAL LF++A +  L+ N FT SSV+
Sbjct: 59  GEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVV 118

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
             C     L  GKQ+H +  KT + S+ F  SSL+ +Y+KCG + DAY VF  I  +N+ 
Sbjct: 119 RVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLG 178

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +WN M+   ++HA + +   LF++M+  G+ PN  T++ VL ACSH G+VEKG+ YF+LM
Sbjct: 179 MWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELM 238

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
            K++ + P   HY+ M+D+LGRAG + +A  +I  MP + T S+WG+LL  CR + + EL
Sbjct: 239 -KEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTEL 297

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--- 480
           A   A ++F + P           + +A  R+EE ARARK++RD  VKKE   SWVE   
Sbjct: 298 ASFVADRVFELGP-----------VSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGN 346

Query: 481 -----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                  G R+HP   +IY KLE+L EEM++ GY  +T   L +V+   K + + +HSE+
Sbjct: 347 RIHTFAAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSER 406

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   P  PIR+MKNLR+CGDCH+ +KF S+  GR  IVRD NRFH F +G+CS
Sbjct: 407 LAIAFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCS 466

Query: 596 CWDFW 600
           C D+W
Sbjct: 467 CRDYW 471



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 145/268 (54%), Gaps = 2/268 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H+  +  G + D    + +++ Y+KCG I  ARK+FDEMP R +VSW+ +I  Y+ 
Sbjct: 29  GQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQ 88

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G ++EA+ LF   L E     ++FT SSV+  C     +   KQ+H   LK + D + F
Sbjct: 89  MGEDEEALRLFKQALIE-DLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSF 147

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG++L+ +Y+KCG+I DA  VF  +P RN   W++M+    Q+   E+A  LF++ + +G
Sbjct: 148 VGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVG 207

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ N  T   V+ AC+    + +G+    ++ + G        +S+VD+  + G + DA 
Sbjct: 208 MKPNFITFLCVLYACSHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAV 267

Query: 292 FVFSGIE-EKNVVLWNTMISGFSRHARS 318
            +   +  E    +W  +++G   H  +
Sbjct: 268 SIIKKMPMEPTESVWGALLTGCRIHGDT 295



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + ++ C        GK  H   +    ++ +   + LI+ YSKCG+I  A  VF E+
Sbjct: 113 TFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEI 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +  WN ++ +   +   ++A  LF  M   G  P +  T   VL AC +   + E 
Sbjct: 173 PIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKP-NFITFLCVLYAC-SHAGLVEK 230

Query: 155 KQLHVFALKA-AMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
            Q +   +K   ++       +++D+  + G + DA  + + MP E  E  W +++ G
Sbjct: 231 GQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTG 288


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/578 (40%), Positives = 332/578 (57%), Gaps = 14/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++ A    PV GK  HA  +  G   D        + YSK GL   AR +FDEM
Sbjct: 111 TFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEM 170

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R + +WN  + +   +GR  +A+A F   L     P +  T  + L ACA    +   
Sbjct: 171 PHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEP-NAITFCAFLNACADIVSLELG 229

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFV 212
           +QLH F +++    +V V   L+D Y KCG I  +  VF  +    RN V+W S++A  V
Sbjct: 230 RQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALV 289

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN   E A ++F +A+   +E   F ISSV+ ACA L  L  G+ VHA+  K     N+F
Sbjct: 290 QNHEEERACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIF 348

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA- 331
             S+LVD+Y KCG +  A  VF  + E+N+V WN MI G++        + LF++M    
Sbjct: 349 VGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGS 408

Query: 332 -GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+  +  T +SVLSACS  G VE+G   F+ M  ++ + P   HY+C++D+LGR+GL+ 
Sbjct: 409 CGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVD 468

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
            AY+ I  MP   T S+WG+LL +C+ +   +L +IAA++LF ++PD++GNH++ SN+ A
Sbjct: 469 RAYEFIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLA 528

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
           +  RWEE    RK +RD  +KK    SWV +K + +        H + +EI + L KL  
Sbjct: 529 SAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRG 588

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           EMKK GY P+    L D+E+  K   + +HSEK+AL FGL+ L  GVPIRI KNLRIC D
Sbjct: 589 EMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICID 648

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CHS +KF S+I GRE IVRD NRFH F +G CSC D+W
Sbjct: 649 CHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 218/436 (50%), Gaps = 15/436 (3%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDT----LTSNILINFYSKCGLISGARKVF 91
           L + L+S    R+ + G+  HA I+     +DT       N L+N YSK  L + A+ V 
Sbjct: 10  LGSFLESAVLSRSSLLGRAVHAHIL---RTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVL 66

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
                R +V+W ++I     N R   A+  F NM RE   P ++FT   V  A A+    
Sbjct: 67  SLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLP-NDFTFPCVFKASASLHMP 125

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              KQLH  ALK     +VFVG +  D+Y+K GL  +A  +F+ MP RN  TW++ ++  
Sbjct: 126 VTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNA 185

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           VQ+    +A+  F++   +  E N  T  + + ACA + +L  G+Q+H  + ++ +  ++
Sbjct: 186 VQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDV 245

Query: 272 FAASSLVDMYAKCGCVVDAYFVFS--GIEEKNVVLWNTMISGFSR-HARSVEVMILFEKM 328
              + L+D Y KCG +V +  VFS  G   +NVV W ++++   + H      M+  +  
Sbjct: 246 SVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQAR 305

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           ++  + P +    SVLSAC+ +G +E G+S   L +K   V  N+F  S ++D+ G+ G 
Sbjct: 306 KE--VEPTDFMISSVLSACAELGGLELGRSVHALALKA-CVEENIFVGSALVDLYGKCGS 362

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           I  A  +   MP +     W +++    +  ++++A    +++       A +++ L ++
Sbjct: 363 IEYAEQVFREMP-ERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSV 421

Query: 449 YAANRRWEEVARARKL 464
            +A  R   V R  ++
Sbjct: 422 LSACSRAGAVERGLQI 437


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/634 (35%), Positives = 358/634 (56%), Gaps = 48/634 (7%)

Query: 14  KSFSSSAIASASANANATELS---------TLQATLQSCARERAPVRGKVCHAKIIGMGL 64
           + +S S +  A+  A  T +          TL   L+  +       GK  H ++I +G 
Sbjct: 108 EGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGF 167

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY--------------- 109
            +  L  + L++ YSK G IS A+KVF  +  R  V +NT++G                 
Sbjct: 168 ESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRG 227

Query: 110 ---------------TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                            NG E+EA+  F  M  EG     ++   SVL AC     + + 
Sbjct: 228 MEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEG-LKMDQYPFGSVLPACGGLGAINDG 286

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   ++  +  +++VG+AL+D+Y KC  +  A  VF+ M ++N V+W++MV G+ Q 
Sbjct: 287 RQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQT 346

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA+ +F   Q  G++ + +T+   I ACA +++L +G Q H      G    +  +
Sbjct: 347 GRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVS 406

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SLV +Y KCG + D+  +F+ +  ++ V W  M+S +++  R+VE + LF+KM Q GL 
Sbjct: 407 NSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLK 466

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T   V+SACS  G+VEKG+ YF+LM+ ++ ++P+  HYSCMID+  R+G I EA  
Sbjct: 467 PDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMG 526

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MPF   A  W +LL++CRN  NLE+ + AA+ L  ++P +   + LLS+IYA+  +
Sbjct: 527 FINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGK 586

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ VA+ R+ +++  V+KE  +SW++ KGK         + P   +IY+KLE+L +++  
Sbjct: 587 WDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIID 646

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GYKP+T    HDVE++ K ++L  HSE+LA+ FGL+ +  G+PIR+ KNLR+C DCH+ 
Sbjct: 647 NGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNA 706

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S + GRE +VRD  RFH F +G+CSC DFW
Sbjct: 707 TKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 220/428 (51%), Gaps = 46/428 (10%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N L+  YSK G +S   + F+++P R  V+WN +I  Y+ +G    AV  +  M+++  +
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSS 132

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             +  T+ ++L   ++   V   KQ+H   +K   +  + VG+ LLD+Y+K G ISDA +
Sbjct: 133 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKK 192

Query: 192 VFESMPERN------------------------------EVTWSSMVAGFVQNELYEEAL 221
           VF  + +RN                               V+WS+M+ G  QN + +EA+
Sbjct: 193 VFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAI 252

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
             FR  ++ GL+ +Q+   SV+ AC GL A+  G+Q+HA + +T    +++  S+L+DMY
Sbjct: 253 ECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMY 312

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
            KC C+  A  VF  +++KNVV W  M+ G+ +  R+ E + +F  MQ++G+ P+  T  
Sbjct: 313 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLG 372

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY----SCMIDILGRAGLIHEAYDLIL 397
             +SAC++I  +E+G  +         +   + HY    + ++ + G+ G I ++  L  
Sbjct: 373 QAISACANISSLEEGSQFHG-----KAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFN 427

Query: 398 NMPFDATASMWGSLLASCRNY-RNLELAEIAAKQL-FGMEPDNAGNHLLLSNIYAANRRW 455
            M      S W +++++   + R +E  ++  K +  G++PD     + L+ + +A  R 
Sbjct: 428 EMNVRDEVS-WTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDG----VTLTGVISACSRA 482

Query: 456 EEVARARK 463
             V + ++
Sbjct: 483 GLVEKGQR 490



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           S+ I  C GL A    K +H  + +T      F  +++V  YA     + A  VF GI +
Sbjct: 7   SAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQ 66

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
            N+  WN ++  +S+     E+   FEK+       +  T+  ++   S  G+V      
Sbjct: 67  PNLFSWNNLLLAYSKSGHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKA 122

Query: 360 FDLMVKQ 366
           ++ M+K 
Sbjct: 123 YNTMMKD 129


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 339/574 (59%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C          + H +II  G  +D    N L+  Y+KCG I  A+ VFD +
Sbjct: 156 TFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGL 215

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R IVSW +II  Y  NG+  EA+ +F  M   G  P     + S+L A     D+ + 
Sbjct: 216 YHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKP-DWIALVSILRAYTDVDDLEQG 274

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H F +K  ++    +  +L   YAKCGL++ A   F+ M   N + W++M++G+ +N
Sbjct: 275 RSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKN 334

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA+ LF       ++ +  T+ S + A A + +L   + +   + K+ +GS++F  
Sbjct: 335 GHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVN 394

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+DMYAKCG V  A  VF    +K+VV+W+ MI G+  H +  E + L+  M+QAG+ 
Sbjct: 395 TSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVF 454

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I +L+AC+H G+V++G   F  M K   ++P   HYSC++D+LGRAG + EA  
Sbjct: 455 PNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACA 513

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I+ +P +   S+WG+LL++C+ YR + L E AA +LF ++P N G+++ LSN+YA++  
Sbjct: 514 FIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCL 573

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ VA  R L+R+  + K+   S +EI GK        ++HP   EI+ +L++L   +K+
Sbjct: 574 WDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKE 633

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +G+ P TE  LHD+    K+E L  HSE++A+ +GL+   PG  +RI KNLR C +CHS 
Sbjct: 634 VGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSA 693

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S++  RE IVRD NRFHHF +G CSC D+W
Sbjct: 694 IKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 176/357 (49%), Gaps = 3/357 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H +++  GL ++      L+N  S  G I  ARK+FDE     +  WN II SY+ N   
Sbjct: 76  HNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMY 135

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           ++ V ++  M   G  P   FT   VL AC    D      +H   +K     +VFV   
Sbjct: 136 RDTVEMYRWMRWTGVHP-DGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNG 194

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +YAKCG I  A  VF+ +  R  V+W+S+++G+ QN    EAL +F + +  G++ +
Sbjct: 195 LVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPD 254

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
              + S++ A   +  L QG+ +H  + K G         SL   YAKCG V  A   F 
Sbjct: 255 WIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFD 314

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            ++  NV++WN MISG++++  + E + LF  M    + P+  T  S + A + +G +E 
Sbjct: 315 QMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLEL 374

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            + + D  V + N   ++F  + +ID+  + G + E    + +   D    MW +++
Sbjct: 375 AQ-WMDDYVSKSNYGSDIFVNTSLIDMYAKCGSV-EFARRVFDRNSDKDVVMWSAMI 429



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 117/210 (55%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   + + +  N F+ T L++  +  G I  A ++F+     +   W++++  + +N 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           +Y + + ++R  +  G+  + FT   V+ AC  L        +H  + K GFGS++F  +
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            LV +YAKCG +  A  VF G+  + +V W ++ISG++++ ++VE + +F +M+  G+ P
Sbjct: 194 GLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKP 253

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +    +S+L A + +  +E+G+S    ++K
Sbjct: 254 DWIALVSILRAYTDVDDLEQGRSIHGFVIK 283


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/545 (38%), Positives = 322/545 (59%), Gaps = 18/545 (3%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + D +    +++ Y + G I+ AR +FDEMP+R +VSW  +I  Y  NG    A  LF  
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEV 230

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M    +  ++   V  +         V +  +L      A  +  V    A++  + + G
Sbjct: 231 MPERNEVSWTAMLVGYIQAG-----HVEDAAEL----FNAMPEHPVAACNAMMVGFGQRG 281

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
           ++  A  VFE M ER++ TWS+M+  + QNE   EAL  FR     G+  N  ++ S++ 
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            CA LA L  G++VHA + +  F  ++FA S+L+ MY KCG +  A  VF   E K++V+
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN+MI+G+++H    + + +F  M+ AG+ P+  TYI  L+ACS+ G V++G+  F+ M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
              ++ P   HYSCM+D+LGR+GL+ EA+DLI NMP +  A +WG+L+ +CR +RN E+A
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIA 521

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK 484
           E AAK+L  +EP NAG ++LLS+IY +  RWE+ ++ RK I    + K    SW+E   +
Sbjct: 522 EFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKR 581

Query: 485 RN---------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
            +         HP  A I   LEKL   + + GY  +    LHD+++ +K   L +HSE+
Sbjct: 582 VHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSER 641

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
            A+ +GL+ +  G+PIR+MKNLR+CGDCHS +K  ++I  RE I+RD NRFHHF +G CS
Sbjct: 642 QAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCS 701

Query: 596 CWDFW 600
           C D+W
Sbjct: 702 CRDYW 706



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 37/306 (12%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N  I   ++ G I GAR  F+ MP R   S+N ++  Y  N     A+ LF  M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
            Y     ++++   + +R         + ++      +V   T+LL  Y + GL++DA R
Sbjct: 81  SY-----NALISGLSLRRQTLPDAAAALASIP--FPPSVVSFTSLLRGYVRHGLLADAIR 133

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +F+ MPERN V+++ ++ G +      EA  LF          ++     V+   A L+ 
Sbjct: 134 LFQQMPERNHVSYTVLLGGLLDAGRVNEARRLF----------DEMPDRDVVAWTAMLSG 183

Query: 252 LIQGKQVHA--VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             Q  ++     L       N+ + ++++  YA+ G V  A  +F  + E+N V W  M+
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAML 243

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI-------GMVEKGKSYFDL 362
            G+ +     +   LF  M +   HP        ++AC+ +       GMV+  K+ F+ 
Sbjct: 244 VGYIQAGHVEDAAELFNAMPE---HP--------VAACNAMMVGFGQRGMVDAAKTVFEK 292

Query: 363 MVKQHN 368
           M ++ +
Sbjct: 293 MCERDD 298



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 22/259 (8%)

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           A+ G I  A   FE+MP R   ++++++AG+ +N L + AL LFRR     L      IS
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 241 SVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
                  GL+   Q      A L    F  ++ + +SL+  Y + G + DA  +F  + E
Sbjct: 88  -------GLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           +N V +  ++ G     R  E   LF++M    +      + ++LS     G + + ++ 
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDV----VAWTAMLSGYCQAGRITEARAL 196

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FD M K+     NV  ++ MI    + G ++ A  L   MP     S W ++L       
Sbjct: 197 FDEMPKR-----NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVS-WTAMLVGYIQAG 250

Query: 420 NLELAEIAAKQLFGMEPDN 438
           ++E     A +LF   P++
Sbjct: 251 HVE----DAAELFNAMPEH 265



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA ++    + D    + LI  Y KCG +  A++VF     + IV WN++I  Y  
Sbjct: 352 GREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ 411

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL-HVFALKAAMDRNV 170
           +G  ++A+ +F +M   G +P    T    L AC+    V E +++ +   + +++    
Sbjct: 412 HGLGEQALGIFHDMRLAGMSP-DGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGA 470

Query: 171 FVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
              + ++D+  + GL+ +A  + ++MP E + V W +++  
Sbjct: 471 EHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGA 511


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 336/560 (60%), Gaps = 11/560 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           + GK  HA  I   L++DT   N L++ Y KC  I  +  VFD M  +  +SW TII  Y
Sbjct: 383 LNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCY 442

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             + R  EA+ +F    +EG        + S+L AC+    +   KQLH +A++  +  +
Sbjct: 443 AQSSRHIEALEIFREAQKEG-IKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LD 500

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + V   ++D+Y +CG +  + ++FE++ +++ VTW+SM+  +  + L  EAL+LF   Q 
Sbjct: 501 LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQS 560

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             ++ +   + S++ A  GL++L +GK+VH  L +  F       SSLVDMY+ CG +  
Sbjct: 561 TDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSG 620

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF+ ++ K++VLW  MI+    H    + + LF++M Q G+ P+  +++++L ACSH
Sbjct: 621 ALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSH 680

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
             +V +GK Y D+M+  + + P   HY+C++D+LGR+G   EAY+ I +MP    + +W 
Sbjct: 681 SKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWC 740

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLL +CR ++N ELA +AA +L  +EPDN GN++L+SN++A   +W      R  I +  
Sbjct: 741 SLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERG 800

Query: 470 VKKEKSKSWVEIKG-------KRNHPRIAE-IYSKLEKLVEEMKKL-GYKPETEHDLHDV 520
           ++K+ + SW+EI         + N  R AE I  KL ++ E ++K  GY  +T   LHDV
Sbjct: 801 LRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDV 860

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
            +  K ++L  HSE+LA++FGL+   PG+P+RI KNLR+CGDCH F K  S++  R+ +V
Sbjct: 861 SEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVV 920

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD NRFHHF+ GSCSC DFW
Sbjct: 921 RDANRFHHFSGGSCSCGDFW 940



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 182/334 (54%), Gaps = 8/334 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
            L   A ++A  +G   HA  +  G    +D   +  L+  Y KCG ++ AR +FD M  
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINM---LREGKTPYSEFTVSSVLCACAAKRDVFE 153
           R + SWN +IG+Y ++G   EA+ ++  M      G  P    T++SVL A   + D   
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAP-DGCTLASVLKASGVEGDGRC 182

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFV 212
             ++H  A+K  +DR+ FV  AL+ +YAKCG++  A RVFE M + R+  +W+SM++G +
Sbjct: 183 GCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCL 242

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN ++ +AL LFR  Q   L  N +T   V+  C  LA L  G+++HA L K+G   N+ 
Sbjct: 243 QNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNI- 301

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+ MY KCG V  A  VF  I+EK+ + WN+M+S + ++    E +    +M + G
Sbjct: 302 QCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGG 361

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
             P+    +S+ SA  H+G +  GK      +KQ
Sbjct: 362 FQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQ 395



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 206/422 (48%), Gaps = 8/422 (1%)

Query: 20  AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           A+  ++A+  A +  TL + L++   E     G   H   +  GL+  T  +N LI  Y+
Sbjct: 151 AMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYA 210

Query: 80  KCGLISGARKVFDEMPQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
           KCG++  A +VF+ M   R + SWN++I     NG   +A+ LF  M R      + +T 
Sbjct: 211 KCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQR-AVLSMNSYTT 269

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
             VL  C     +   ++LH   LK+  + N+    ALL +Y KCG +  A RVF  + E
Sbjct: 270 VGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDE 328

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           ++ ++W+SM++ +VQN LY EA+         G + +   I S+  A   L  L+ GK+V
Sbjct: 329 KDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEV 388

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA   K    S+    ++L+DMY KC  +  +  VF  +  K+ + W T+I+ +++ +R 
Sbjct: 389 HAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRH 448

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
           +E + +F + Q+ G+  +     S+L ACS +  +   K      ++  N L ++   + 
Sbjct: 449 IEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIR--NGLLDLVVKNR 506

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN--YRNLELAEIAAKQLFGMEP 436
           +IDI G  G ++ +  +   +      + W S++    N    N  L   A  Q   ++P
Sbjct: 507 IIDIYGECGEVYHSLKMFETVEQKDIVT-WTSMINCYANSGLLNEALVLFAEMQSTDVQP 565

Query: 437 DN 438
           D+
Sbjct: 566 DS 567


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/594 (36%), Positives = 349/594 (58%), Gaps = 46/594 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA+I+  G + D + +  LIN Y KCG    AR+VFD+M +R +VSWN +IG Y  
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG   EA+ L+  +  EG    ++ T  S+L AC++ + + + + +H   L+  +D  V 
Sbjct: 286 NGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVA 344

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSS------------------------- 206
           V TAL+++YAKCG + +A +VF +M  R+ V WS+                         
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404

Query: 207 ---------MVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGK 256
                    M+  +VQN     A+ +FR      GL+ +  T  +V+ ACA L  L + K
Sbjct: 405 SRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVK 464

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
            +HA + ++   SN+   ++L++MYA+CG + +A  +F+  +EK VV W  M++ FS++ 
Sbjct: 465 ALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYG 524

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R  E + LF++M   G+ P++ TY S+L  C+H G +E+G  YF  M + H + P   H+
Sbjct: 525 RYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHF 584

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           + M+D+LGR+G + +A +L+ +MPF+     W + L +CR +  LEL E AA++++ ++P
Sbjct: 585 AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDP 644

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHP 488
            +   ++ +SNIYAA+  WE+VA  RK + +  +KK    S++E+ GK        + HP
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHP 704

Query: 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM-CLCP 547
           R  EI  +L +L   M+  GY P+T+  LHDV +  K+ +L++HSEK+A+ FGL+     
Sbjct: 705 RTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGS 764

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHF-TNGSCSCWDFW 600
           G PIR++KNLR+C DCH+  KF +RIAGR+ IVRD NRFH F ++G CSC D+W
Sbjct: 765 GEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 200/382 (52%), Gaps = 9/382 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC+     V G+  H +I       DT+  N LI+ Y KC  +  AR VF+ M
Sbjct: 9   TFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68

Query: 95  P--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
              QR +VSWN +I +Y  NG   EA+ L+  M  +G       T  SVL AC++   + 
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQG-LGTDHVTFVSVLGACSS---LA 124

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + +++H     + +D    +  AL+ +YA+ G + DA R+F+S+  R+E +W++++    
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q+  +  AL +F+  +   ++ N  T  +VI   +    L +G+++HA +   GF +++ 
Sbjct: 185 QSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLV 243

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A++L++MY KCG   +A  VF  ++++++V WN MI  +  +    E + L++K+   G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEG 303

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
               + T++S+L ACS +  + +G+     ++++  +   V   + ++++  + G + EA
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEA 362

Query: 393 YDLILNMPFDATASMWGSLLAS 414
              + N   +  A  W +L+ +
Sbjct: 363 RK-VFNAMKNRDAVAWSTLIGA 383



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 229/446 (51%), Gaps = 44/446 (9%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
            T+  T  + L +C+   +  +G+  H ++   GL++    +N L+  Y++ G +  A++
Sbjct: 107 GTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR 163

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F  +  R   SWN +I +++ +G    A+ +F  M  + K P S  T  +V+   +   
Sbjct: 164 MFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVK-PNST-TYINVISGFSTPE 221

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            + E +++H   +    D ++ V TAL+++Y KCG   +A  VF+ M +R+ V+W+ M+ 
Sbjct: 222 VLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIG 281

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +V N  + EAL L+++  + G +  + T  S++ AC+ + AL QG+ VH+ + + G  S
Sbjct: 282 CYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDS 341

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI-----SGFSRHAR------- 317
            +  A++LV+MYAKCG + +A  VF+ ++ ++ V W+T+I     +G+ + AR       
Sbjct: 342 EVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFD 401

Query: 318 ----------------------SVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVE 354
                                 +V  M +F +M   AGL P+  T+I+VL AC+ +G + 
Sbjct: 402 RLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLS 461

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           + K+     + +  +  NV   + +I++  R G + EA  L      + T   W +++A+
Sbjct: 462 EVKA-LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAA 519

Query: 415 CRNY-RNLELAEIAAK-QLFGMEPDN 438
              Y R  E  ++  +  L G++PD+
Sbjct: 520 FSQYGRYAEALDLFQEMDLEGVKPDD 545



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 161/326 (49%), Gaps = 48/326 (14%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  + L +C+  +A  +G++ H+ I+  GL+++   +  L+N Y+KCG +  ARKVF+ 
Sbjct: 309 ATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNA 368

Query: 94  MPQRCIVSWNTIIGSYTTNGREQE----------------------------------AV 119
           M  R  V+W+T+IG+Y +NG  ++                                  A+
Sbjct: 369 MKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAM 428

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            +F  M           T  +VL ACA+   + E K LH    ++ ++ NV V   L+++
Sbjct: 429 KIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINM 488

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YA+CG + +A R+F +  E+  V+W++MVA F Q   Y EAL LF+   + G++ +  T 
Sbjct: 489 YARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTY 548

Query: 240 SSVICACAGLAALIQG-------KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           +S++  C    +L QG        ++HA L  T   ++ FAA  +VD+  + G + DA  
Sbjct: 549 TSILFVCTHGGSLEQGWRYFTDMAELHA-LAPT---ADHFAA--MVDLLGRSGRLFDAKE 602

Query: 293 VFSGIE-EKNVVLWNTMISGFSRHAR 317
           +   +  E + V W T ++    H +
Sbjct: 603 LLESMPFEPDPVAWMTFLTACRIHGK 628


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/586 (37%), Positives = 347/586 (59%), Gaps = 12/586 (2%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND----TLTSNILINFYSKCG 82
           + +A   STL A L   A+  A  +G+  HA  +     +D     L    L++ Y+KCG
Sbjct: 223 DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCG 282

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            +  A +VF+ M  R  V+W+ ++G +   GR  EA +LF +ML +G    S  +V+S L
Sbjct: 283 HLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASAL 342

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            ACA   D+   KQLH    K+ +  ++  G +LL +YAK GLI  A+ +F+ M  ++ V
Sbjct: 343 RACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTV 402

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           ++S++V+G+VQN   +EA  +FR+ Q   ++ +  T+ S+I AC+ LAAL  GK  H  +
Sbjct: 403 SYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSV 462

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
              G  S     ++L+DMYAKCG +  +  +F  +  +++V WNTMI+G+  H    E  
Sbjct: 463 IVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEAT 522

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LF  M+     P++ T+I ++SACSH G+V +GK +F +M  ++ + P + HY  M+D+
Sbjct: 523 ALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDL 582

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
           L R G + EAY  I  MP  A   +WG+LL +CR ++N++L +  +  +  + P+  GN 
Sbjct: 583 LARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNF 642

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIY 494
           +LLSNI++A  R++E A  R + ++   KK    SW+EI         G R+H + +EIY
Sbjct: 643 VLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIY 702

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIM 554
            +L+ ++ ++ KLGY+ +T   L DVE+  K++ L++HSEKLA+ FG++ L     I + 
Sbjct: 703 QELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVT 762

Query: 555 KNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KNLR+CGDCH+ +K+ + +  R  IVRD NRFHHF NG CSC DFW
Sbjct: 763 KNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 209/385 (54%), Gaps = 11/385 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+        +  H      GL+ D   S  L++ Y+KC     A  VF  M
Sbjct: 131 TFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WN ++  Y  +G+  + +A  + ++++   P +  T+ ++L   A    + + 
Sbjct: 191 PARDVVAWNAMLAGYALHGKYSDTIACLL-LMQDDHAPNAS-TLVALLPLLAQHGALSQG 248

Query: 155 KQLHVFALKAA----MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + +H ++++A         V VGTALLD+YAKCG +  ASRVFE+M  RNEVTWS++V G
Sbjct: 249 RAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGG 308

Query: 211 FVQNELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           FV      EA  LF+     GL + +  +++S + ACA L+ L  GKQ+HA+L K+G  +
Sbjct: 309 FVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHT 368

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++ A +SL+ MYAK G +  A  +F  +  K+ V ++ ++SG+ ++ ++ E   +F KMQ
Sbjct: 369 DLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ 428

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGK-SYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
              + P+  T +S++ ACSH+  ++ GK  +  ++V+   +       + +ID+  + G 
Sbjct: 429 ACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR--GIASETSICNALIDMYAKCGR 486

Query: 389 IHEAYDLILNMPFDATASMWGSLLA 413
           I  +  +   MP     S W +++A
Sbjct: 487 IDLSRQIFDVMPARDIVS-WNTMIA 510



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 177/368 (48%), Gaps = 15/368 (4%)

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG +S AR +FD++P   I  +N +I +Y+  G             R    P + +T   
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQP-NNYTFPF 134

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           VL AC+A  D+   + +H  A +A +  ++FV TAL+DVYAKC     A+ VF  MP R+
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 201 EVTWSSMVAGFVQNELYEEA---LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
            V W++M+AG+  +  Y +    L+L +         N  T+ +++   A   AL QG+ 
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLLLMQDDHA----PNASTLVALLPLLAQHGALSQGRA 250

Query: 258 VHAVLCKT----GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           VHA   +          +   ++L+DMYAKCG +V A  VF  +  +N V W+ ++ GF 
Sbjct: 251 VHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFV 310

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
              R +E   LF+ M   GL     T + S L AC+++  +  GK    L+ K   +  +
Sbjct: 311 LCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKS-GLHTD 369

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-QL 431
           +   + ++ +  +AGLI +A  L   M    T S    +    +N +  E   +  K Q 
Sbjct: 370 LTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQA 429

Query: 432 FGMEPDNA 439
             ++PD A
Sbjct: 430 CNVQPDVA 437


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/579 (37%), Positives = 335/579 (57%), Gaps = 48/579 (8%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T+ S + A LQ+C++      GK  H +I+   L  +T   N + + Y+KCG I  AR +
Sbjct: 154 TQYSHVNA-LQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLL 212

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD M  + +VSWN +I  Y   G   E + LF  M   G  P    TVS+VL A      
Sbjct: 213 FDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKP-DLVTVSNVLNA------ 265

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                                        Y +CG + DA  +F  +P+++E+ W++M+ G
Sbjct: 266 -----------------------------YFRCGRVDDARNLFIKLPKKDEICWTTMIVG 296

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN   E+A +LF       ++ + +TISS++ +CA LA+L  G+ VH  +   G  ++
Sbjct: 297 YAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNS 356

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           M  +S+LVDMY KCG  +DA  +F  +  +NV+ WN MI G++++ + +E + L+E+MQQ
Sbjct: 357 MLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQ 416

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
               P+  T++ VLSAC +  MV++G+ YFD  + +H + P + HY+CMI +LGR+G + 
Sbjct: 417 ENFKPDNITFVGVLSACINADMVKEGQKYFD-SISEHGIAPTLDHYACMITLLGRSGSVD 475

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +A DLI  MP +    +W +LL+ C    +L+ AE+AA  LF ++P NAG +++LSN+YA
Sbjct: 476 KAVDLIQGMPHEPNYRIWSTLLSVCAK-GDLKNAELAASHLFELDPRNAGPYIMLSNLYA 534

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
           A  RW++VA  R L+++   KK  + SWVE+  K +        HP + +IY +L +L+ 
Sbjct: 535 ACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLIS 594

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV-PIRIMKNLRICG 561
            ++++GY P+T   LH+V +  K   + +HSEKLAL F L+    GV PIRI+KN+R+C 
Sbjct: 595 ILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCD 654

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH FMKFAS    R  I+RD NRFHHF  G CSC D W
Sbjct: 655 DCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 184/373 (49%), Gaps = 38/373 (10%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D  + N L++ Y+K G++     VFD+MP R  VS+NT+I  + +NG   +A+ + + M 
Sbjct: 88  DVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQ 147

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +G  P ++++  + L AC+   D+   KQ+H   + A +  N FV  A+ D+YAKCG I
Sbjct: 148 EDGFQP-TQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDI 206

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  +F+ M ++N V+W+ M++G+V+     E + LF   Q+ GL+ +  T+S+V+ A 
Sbjct: 207 DKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNA- 265

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
                                             Y +CG V DA  +F  + +K+ + W 
Sbjct: 266 ----------------------------------YFRCGRVDDARNLFIKLPKKDEICWT 291

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI G++++ R  +  +LF  M +  + P+  T  S++S+C+ +  +  G+     +V  
Sbjct: 292 TMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVM 351

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             +  ++   S ++D+  + G+  +A  +   MP     +    +L   +N + LE   +
Sbjct: 352 -GIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTL 410

Query: 427 AAK-QLFGMEPDN 438
             + Q    +PDN
Sbjct: 411 YERMQQENFKPDN 423



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 145/278 (52%), Gaps = 14/278 (5%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           R+V+    LL  YAK G++ +   VF+ MP R+ V++++++A F  N    +AL +  R 
Sbjct: 87  RDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRM 146

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q  G +  Q++  + + AC+ L  L  GKQ+H  +     G N F  +++ DMYAKCG +
Sbjct: 147 QEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDI 206

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  +F G+ +KNVV WN MISG+ +     E + LF +MQ +GL P+  T  +VL+A 
Sbjct: 207 DKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAY 266

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM------PF 401
              G V+  ++ F  + K+  +      ++ MI    + G   +A+ L  +M      P 
Sbjct: 267 FRCGRVDDARNLFIKLPKKDEIC-----WTTMIVGYAQNGREEDAWMLFGDMLRRNVKPD 321

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
             T S   S+++SC    +L   ++   ++  M  DN+
Sbjct: 322 SYTIS---SMVSSCAKLASLYHGQVVHGKVVVMGIDNS 356


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/615 (37%), Positives = 351/615 (57%), Gaps = 49/615 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGL-----NNDTLTSNILINFYSKCGLISGAR 88
           S++   L S   +RA   G  C A +    L       D LT   +I  Y +   ++GAR
Sbjct: 184 SSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           +VF+ M +    +WN +I  Y   G  QEA+ L   M   G   + + T ++++ ACA  
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG-IQFDDITYTTIISACANV 302

Query: 149 RDVFECKQLHVFALKAAMDRN----VFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
                 KQ+H + LK  ++ N    + V  AL+ +Y K   + +A ++F +MP RN +TW
Sbjct: 303 GSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITW 362

Query: 205 SSMVAGFV-------------------------------QNELYEEALILFRRAQVLGLE 233
           +++++G+V                               QN   +E L LF++ ++ G E
Sbjct: 363 NAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE 422

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
              F  +  + AC+ L AL  G+Q+HA L   G+ S++   ++++ MYAKCG V  A  V
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +   ++V WN+MI+   +H   V+ + LF++M + G+ P+  T+++VL+ACSH G+V
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           EKG+ YF+ M++ + + P   HY+ M+D+  RAG+   A  +I +MP    A +W +LLA
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
            CR + N++L   AA+QLF + P N G ++LLSNIYA   RW +VA+ RKL+RD  V+KE
Sbjct: 603 GCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKE 662

Query: 474 KSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
            + SW+E++ K +        HP +  +Y  LE+L  EMKKLGY P+T+  LHD+E  +K
Sbjct: 663 PACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQK 722

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           +  L  HSEKLA+ FG+M L P   +R+ KN+RICGDCH+  KF S++A RE IVRD  R
Sbjct: 723 EHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKR 782

Query: 586 FHHFTNGSCSCWDFW 600
           FHHF NG CSC D+W
Sbjct: 783 FHHFKNGDCSCRDYW 797



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 205/455 (45%), Gaps = 87/455 (19%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALF 122
           N D +    LI  Y   G +   R++F+  P   R  V +N +I  Y  NG    A+ LF
Sbjct: 76  NPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELF 135

Query: 123 INMLREGKTPYSEFTVSSVLCACAA-KRDVFECKQLHVFALKAAMD-RNVFVGTALLDVY 180
             M R+   P  +FT +SVL A      +  +C Q+H   +K  M   +  V  ALL VY
Sbjct: 136 RAMRRDDFRP-DDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVY 194

Query: 181 AK--------CGLISDASRVFESMPERNEVTWSSMVAGFVQNE----------------- 215
            K        C  +  A ++F+ MP+R+E+TW++M+ G+V+N+                 
Sbjct: 195 VKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLG 254

Query: 216 --------------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
                          ++EAL L R+ + LG++++  T +++I ACA + +   GKQ+HA 
Sbjct: 255 AAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAY 314

Query: 262 LCKTGFGSN----MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           + K     N    +  +++L+ +Y K   V +A  +F  +  +N++ WN ++SG+    R
Sbjct: 315 ILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGR 374

Query: 318 -----------------SVEVMI--------------LFEKMQQAGLHPNEQTYISVLSA 346
                            ++ VMI              LF++M+  G  P +  +   L+A
Sbjct: 375 MEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTA 434

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CS +G +E G+     +V       ++   + MI +  + G++  A  + + MP     S
Sbjct: 435 CSVLGALENGRQLHAQLV-HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVS 493

Query: 407 MWGSLLASCRNY----RNLELAEIAAKQLFGMEPD 437
            W S++A+   +    + +EL +   K+  G+ PD
Sbjct: 494 -WNSMIAALGQHGHGVKAIELFDQMLKE--GVFPD 525



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 134/330 (40%), Gaps = 84/330 (25%)

Query: 176 LLDVYAKCGLISDASRVFESMPE---------------------------------RNEV 202
           LL++Y K   +  A ++FE +P                                  R+ V
Sbjct: 54  LLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAV 261
            +++M+ G+  N     AL LFR  +      + FT +SV+ A        Q   Q+H  
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 262 LCKTGFGS-NMFAASSLVDMYAK--------CGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
           + KTG G  +    ++L+ +Y K        C  +V A  +F  + +++ + W TMI+G+
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 313 SRH-----ARSV--------------------------EVMILFEKMQQAGLHPNEQTYI 341
            R+     AR V                          E + L  KM+  G+  ++ TY 
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC------MIDILGRAGLIHEAYDL 395
           +++SAC+++G  + GK     ++K + + PN  H  C      +I +  +   + EA  +
Sbjct: 294 TIISACANVGSFQMGKQMHAYILK-NELNPN--HSFCLSVSNALITLYCKNNKVDEARKI 350

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAE 425
              MP     + W ++L+   N   +E A+
Sbjct: 351 FYAMPVRNIIT-WNAILSGYVNAGRMEEAK 379


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 335/574 (58%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L++C R      G+  H++II      +    ++LI+ Y+K G +  A  +    
Sbjct: 475  TYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 534

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              + +VSW T+I  YT    + +A+  F  ML  G     E  +++ + ACA  + + E 
Sbjct: 535  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG-IRSDEVGLTNAVSACAGLQALKEG 593

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            +Q+H  A  +    ++    AL+ +Y+KCG I +A   FE     + + W+++V+GF Q+
Sbjct: 594  QQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQS 653

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EEAL +F R    G++ N FT  S + A +  A + QGKQVHAV+ KTG+ S     
Sbjct: 654  GNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVC 713

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            ++++ MYAKCG + DA   F  +  KN V WN MI+ +S+H    E +  F++M  + + 
Sbjct: 714  NAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVR 773

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            PN  T + VLSACSHIG+V+KG  YF+ M  ++ + P   HY C++D+L RAGL+  A D
Sbjct: 774  PNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKD 833

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             IL MP +  A +W +LL++C  ++N+E+ E AA  L  +EP+++  ++LLSN+YA  R+
Sbjct: 834  FILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRK 893

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
            W+     R+ +++  VKKE  +SW+E+K        G +NHP   EI+   + L +   +
Sbjct: 894  WDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASE 953

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            +GY  +    L +++  +K   +  HSEKLA++FGL+ L   +PI +MKNLR+C DCH +
Sbjct: 954  IGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDW 1013

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF S+++ RE IVRD  RFHHF  G+CSC D+W
Sbjct: 1014 IKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 214/427 (50%), Gaps = 11/427 (2%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPV-RGKVCHAKIIGMGLNNDTLTSN 72
           +SF  + I S           TL+  L+ C +    +  G+  H++I+ +G +N+   S 
Sbjct: 48  ESFQENGIDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSE 107

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            L++FY   G + GA KVFDEMP+R I +WN +I    +     +   LF  M+ E  TP
Sbjct: 108 KLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTP 167

Query: 133 YSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
            +E T S VL AC      F+  +Q+H   +   + ++  V   L+D+Y++ G +  A R
Sbjct: 168 -NEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARR 226

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+ +  ++  +W +M++G  +NE   EA+ LF    VLG+    +  SSV+ AC  + +
Sbjct: 227 VFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIES 286

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H ++ K GF S+ +  ++LV +Y   G ++ A  +FS + +++ V +NT+I+G
Sbjct: 287 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLING 346

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY--------FDLM 363
            S+     + M LF++MQ  GL P+  T  S++ ACS  G +  G+          F   
Sbjct: 347 LSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASN 406

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
            K    L N++     I+      L  E  +++L         +   L  S R +R +++
Sbjct: 407 DKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 466

Query: 424 AEIAAKQ 430
            EI   Q
Sbjct: 467 EEIVPNQ 473



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 175/332 (52%), Gaps = 1/332 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + + +C+ +     G+  HA    +G  ++      L+N Y+KC  I  A   F E
Sbjct: 373 NTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLE 432

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                +V WN ++ +Y      + +  +F  M  E   P +++T  S+L  C    D+  
Sbjct: 433 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP-NQYTYPSILKTCIRLGDLEL 491

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+H   +K +   N +V + L+D+YAK G +  A  +      ++ V+W++M+AG+ Q
Sbjct: 492 GEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQ 551

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               ++AL  FR+    G+  ++  +++ + ACAGL AL +G+Q+HA  C +GF S++  
Sbjct: 552 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 611

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV +Y+KCG + +AY  F   E  + + WN ++SGF +   + E + +F +M + G+
Sbjct: 612 QNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGI 671

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             N  T+ S + A S    +++GK    ++ K
Sbjct: 672 DSNNFTFGSAVKAASETANMKQGKQVHAVITK 703


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/594 (36%), Positives = 350/594 (58%), Gaps = 46/594 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA+I+  G ++D + +  LIN Y KCG    AR+VFD+M +R +VSWN +IG Y  
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG   EA+ L+  +  EG    ++ T  S+L AC++ + + + + +H   L+  +D  V 
Sbjct: 286 NGDFHEALELYQKLDMEG-FKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVA 344

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSS------------------------- 206
           V TAL+++YAKCG + +A +VF +M  R+ V WS+                         
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404

Query: 207 ---------MVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGK 256
                    M+  +VQN     A+ +FR      GL+ +  T  +V+ ACA L  L + K
Sbjct: 405 SRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVK 464

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
            +HA + ++   SN+   ++L++MYA+CG + +A  +F+  +EK VV W  M++ FS++ 
Sbjct: 465 ALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYG 524

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R  E + LF++M   G+ P++ TY S+L  C+H G +E+G  YF  M + H + P   H+
Sbjct: 525 RYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHF 584

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           + M+D+LGR+G + +A +L+ +MPF+     W + L +CR +  LEL E AA++++ ++P
Sbjct: 585 AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDP 644

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHP 488
            +   ++ +SNIYAA+  WE+VA  RK + +  +KK    S++E+ GK        + HP
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHP 704

Query: 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM-CLCP 547
           R  EI  +L +L   M+  GY P+T+  LHDV +  K+ +L++HSEK+A+ FGL+     
Sbjct: 705 RTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGS 764

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHF-TNGSCSCWDFW 600
           G PIR++KNLR+C DCH+  KF +RIAGR+ I+RD NRFH F ++G CSC D+W
Sbjct: 765 GEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 230/446 (51%), Gaps = 44/446 (9%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
            T+  T  + L +C+   +  +G+  H ++   GL++    +N L+  Y++ G +  A++
Sbjct: 107 GTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR 163

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F  +  R   SWN +I +++ +G    A+ +F  M  + K P S  T  +V+   +   
Sbjct: 164 MFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMK-PNST-TYINVISGFSTPE 221

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            + E +++H   +    D ++ V TAL+++Y KCG   +A  VF+ M +R+ V+W+ M+ 
Sbjct: 222 VLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIG 281

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +VQN  + EAL L+++  + G +  + T  S++ AC+ + AL QG+ VH+ + + G  S
Sbjct: 282 CYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDS 341

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI-----SGFSRHAR------- 317
            +  A++LV+MYAKCG + +A  VF+ ++ ++ V W+T+I     +G+ + AR       
Sbjct: 342 EVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFD 401

Query: 318 ----------------------SVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVE 354
                                 +V  M +F +M   AGL P+  T+I+VL AC+ +G + 
Sbjct: 402 RLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLS 461

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           + K+     + +  +  NV   + +I++  R G + EA  L      + T   W +++A+
Sbjct: 462 EVKA-LHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAA 519

Query: 415 CRNY-RNLELAEIAAK-QLFGMEPDN 438
              Y R  E  ++  +  L G++PD+
Sbjct: 520 FSQYGRYAEALDLFQEMDLEGVKPDD 545



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 200/382 (52%), Gaps = 9/382 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC+       G+  H +I       DT+  N LI+ Y KC  +  AR VF+ M
Sbjct: 9   TFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68

Query: 95  P--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
              QR +VSWN +I +Y  NG   EA+ L+  M  +G       T  SVL AC++   + 
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQG-LGTDHVTFVSVLGACSS---LA 124

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + +++H     + +D    +  AL+ +YA+ G + DA R+F+S+  R+E +W++++    
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q+  +  AL +F+  +   ++ N  T  +VI   +    L +G+++HA +   GF S++ 
Sbjct: 185 QSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLV 243

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            A++L++MY KCG   +A  VF  ++++++V WN MI  + ++    E + L++K+   G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEG 303

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
               + T++S+L ACS +  + +G+     ++++  +   V   + ++++  + G + EA
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEA 362

Query: 393 YDLILNMPFDATASMWGSLLAS 414
              + N   +  A  W +L+ +
Sbjct: 363 RK-VFNAMKNRDAVAWSTLIGA 383



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 156/320 (48%), Gaps = 36/320 (11%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  + L +C+  +A  +G++ H+ I+  GL+++   +  L+N Y+KCG +  ARKVF+ 
Sbjct: 309 ATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNA 368

Query: 94  MPQRCIVSWNTIIGSYTTNGREQE----------------------------------AV 119
           M  R  V+W+T+IG+Y +NG  ++                                  A+
Sbjct: 369 MKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAM 428

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            +F  M           T  +VL ACA+   + E K LH    ++ ++ NV V   L+++
Sbjct: 429 KIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINM 488

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YA+CG + +A R+F +  E+  V+W++MVA F Q   Y EAL LF+   + G++ +  T 
Sbjct: 489 YARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTY 548

Query: 240 SSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           +S++  C    +L QG +    + +  G        +++VD+  + G + DA  +   + 
Sbjct: 549 TSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMP 608

Query: 299 -EKNVVLWNTMISGFSRHAR 317
            E + V W T ++    H +
Sbjct: 609 FEPDPVAWMTFLTACRIHGK 628


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/612 (37%), Positives = 350/612 (57%), Gaps = 55/612 (8%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           ATE+S+L A             G+  H  ++     +D   SN LI+FYS  G +  A  
Sbjct: 141 ATEVSSLLA-------------GQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYL 187

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF ++ ++ IVSWN++I  +   G  +EA+ LF  M  E   P +  T+  VL ACA + 
Sbjct: 188 VFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARP-NRVTMVGVLSACAKRI 246

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   +    +  +  +D N+ +  A+LD+Y KCG + DA R+F+ M E++ V+W++M+ 
Sbjct: 247 DLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMID 306

Query: 210 GFV-------------------------------QNELYEEALILFRRAQV-LGLEYNQF 237
           G+                                QN   +EAL +FR  Q+    + N+ 
Sbjct: 307 GYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEV 366

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T++S + ACA L A+  G  +H  + K G   N    +SL+DMY+KCG +  A  VF  +
Sbjct: 367 TLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSV 426

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           E ++V +W+ MI+G + H      + LF KMQ+  + PN  T+ ++L ACSH G+V++G+
Sbjct: 427 ERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGR 486

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
            +F+ M   + V+P   HY+CM+DILGRAG + EA +LI  MP   +AS+WG+LL +CR 
Sbjct: 487 LFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRI 546

Query: 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477
           Y N+ELAE+A  +L   + +N G ++LLSNIYA   +W+ V+R R+ ++ S ++KE   S
Sbjct: 547 YGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCS 606

Query: 478 WVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS-RKQEL 528
            +E+         G  +HP   EIYSKL+++V  +K  GY  +  H L  VE+   K+  
Sbjct: 607 SIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHA 666

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHH 588
           L  HSEKLA+ +GL+ + P  PIRI+KNLR+CGDCHS  K  S++  R+ ++RD  RFHH
Sbjct: 667 LNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHH 726

Query: 589 FTNGSCSCWDFW 600
           F+ G+CSC D+W
Sbjct: 727 FSGGNCSCMDYW 738



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 205/417 (49%), Gaps = 44/417 (10%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
            SS+     + N   +  ST+   +  CA ++     K  HA ++  GL  D  ++  L 
Sbjct: 13  ISSNPTILTANNEQKSNPSTVPILIDKCANKK---HLKQLHAHMLRTGLFFDPPSATKL- 68

Query: 76  NFYSKCGLISGAR-----KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
             ++ C L S +      KVFD++P+  + +WNT+I ++ ++ +  + + +FI ML E +
Sbjct: 69  --FTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQ 126

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
              + +T   V+ A      +   + +H   +KA+   ++F+  +L+  Y+  G +  A 
Sbjct: 127 RFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAY 186

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
            VF  + E++ V+W+SM++GFVQ    EEAL LF+R ++     N+ T+  V+ ACA   
Sbjct: 187 LVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRI 246

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
            L  G+     + + G   N+  +++++DMY KCG + DA  +F  +EEK++V W TMI 
Sbjct: 247 DLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMID 306

Query: 311 GFSR-------------------------------HARSVEVMILFEKMQ-QAGLHPNEQ 338
           G+++                               + +  E + +F ++Q      PNE 
Sbjct: 307 GYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEV 366

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           T  S L+AC+ +G ++ G  +  + +K+  +  N    + +ID+  + G + +A ++
Sbjct: 367 TLASTLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEV 422


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 343/577 (59%), Gaps = 15/577 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    ++ CA  +     +  H+ ++  G ++D      +++ YSKCG +  A  +F  
Sbjct: 303 STYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLL 362

Query: 94  MP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           MP  + +VSW  +IG    N     A ALF  M RE     +EFT S+VL A        
Sbjct: 363 MPGSQNVVSWTAMIGGCIQNADIPLAAALFSRM-REDNVKPNEFTYSTVLTASIP----I 417

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              Q+H   +K        VGTALL  Y+K G   +A  +F+ +  ++ V WS+M++ + 
Sbjct: 418 LLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYS 477

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFGSNM 271
           Q    + A  +F +  + G++ N+FTISS I ACA   A I QG+Q HA+  K  +   +
Sbjct: 478 QAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAI 537

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              S+LV MYA+ G +  A  VF    ++++V WN+MISG+++H  S E +  F +M+  
Sbjct: 538 CVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETV 597

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+  +  T+++V+  C+H G+V++G+ YFD MV  HN+ P + HYSCM+D+  RAG + E
Sbjct: 598 GIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDE 657

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
             +LI  MPF A A +W +LL +CR ++N+EL ++AA++L  +EPD++  ++LLSNIYAA
Sbjct: 658 TMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAA 717

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
             RW+E    RKL+   +VKKE   SW++IK K        ++HP   +IY+KL+ +   
Sbjct: 718 AGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTR 777

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +K+ GY P T   LHD+ + +K+ +L+ HSE+LAL FGL+   P  P++I+KNLR+CGDC
Sbjct: 778 LKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDC 837

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H  MK  S I  RE I+RD +RFHHF  G+CSC DFW
Sbjct: 838 HMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 184/345 (53%), Gaps = 9/345 (2%)

Query: 86  GARKVFDEMPQRCIVSWNT----IIGSYTTNGREQ-EAVALFINMLREGKTPYSEFTVSS 140
           GAR+  D MP R   + ++     I  Y   G+ + EA+  F+++ R G+   +   VS 
Sbjct: 47  GARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQGA--AVSR 104

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDR-NVFVGTALLDVYAKCGLISDASRVFESMPER 199
           VL  C    D    +QLH   +K   DR  V VGTAL+D+Y KCG + D   VFE MP+R
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N VTW+S++ G+VQ     + + LF R +  G+  N FT +SV+ A A   A+  G++VH
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A   K G  S +F  +SL++MY+KCG V +A  VF  +E +++V WNT+++G   +   +
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQL 284

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LF   + +    ++ TY +V+  C+++  +   +     ++K H    +    + +
Sbjct: 285 EALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLK-HGFHSDGNVMTAI 343

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           +D   + G + +A+++ L MP       W +++  C    ++ LA
Sbjct: 344 MDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLA 388



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 202/409 (49%), Gaps = 11/409 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L + A + A   G+  HA+ +  G  +     N LIN YSKCGL+  A+ VF +M
Sbjct: 203 TFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQM 262

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWNT++     N  + EA+ LF +  R      S+ T S+V+  CA  + +   
Sbjct: 263 ETRDMVSWNTLMAGLLLNEHQLEALQLFHDS-RASMAKLSQSTYSTVIKLCANLKQLALA 321

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
           +QLH   LK     +  V TA++D Y+KCG + DA  +F  MP  +N V+W++M+ G +Q
Sbjct: 322 RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQ 381

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     A  LF R +   ++ N+FT S+V+ A    +  I   Q+HA + KT +      
Sbjct: 382 NADIPLAAALFSRMREDNVKPNEFTYSTVLTA----SIPILLPQIHAQIIKTNYQHAPSV 437

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+  Y+K G   +A  +F  I+ K+VV W+ M+S +S+         +F KM   G+
Sbjct: 438 GTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGM 497

Query: 334 HPNEQTYISVLSAC-SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            PNE T  S + AC S    +++G+ +  + +K +     +   S ++ +  R G I  A
Sbjct: 498 KPNEFTISSAIDACASPTAGIDQGRQFHAISIK-YRYQDAICVGSALVTMYARKGSIDSA 556

Query: 393 YDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNA 439
             ++     D     W S+++  +   Y    L      +  G+E D A
Sbjct: 557 R-IVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGA 604



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 172/309 (55%), Gaps = 3/309 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           L+ C      V G+  H   +  G +  +      L++ Y KCG +   R VF+ MP+R 
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRN 165

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +V+W +++  Y       + +ALF  M  EG  P + FT +SVL A A++  V   +++H
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWP-NPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             ++K      VFV  +L+++Y+KCGL+ +A  VF  M  R+ V+W++++AG + NE   
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQL 284

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL LF  ++    + +Q T S+VI  CA L  L   +Q+H+ + K GF S+    ++++
Sbjct: 285 EALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIM 344

Query: 279 DMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           D Y+KCG + DA+ +F  +   +NVV W  MI G  ++A       LF +M++  + PNE
Sbjct: 345 DAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNE 404

Query: 338 QTYISVLSA 346
            TY +VL+A
Sbjct: 405 FTYSTVLTA 413


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 360/636 (56%), Gaps = 68/636 (10%)

Query: 32   ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
            E +T+   LQ+C +  A    K  H  +   GL++D    N LI+ YSK G +  AR+VF
Sbjct: 774  ETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVF 833

Query: 92   DEMPQRCIVSWNTIIGSYTTNGREQEAVALF----------------------------- 122
            D M  R   SWN++I SY   G   +A +LF                             
Sbjct: 834  DSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKE 893

Query: 123  --INMLR----EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
              +N+L+    EG  P S  +++SVL A +    +   K+ H + L+   D +V+VGT+L
Sbjct: 894  EVLNILQRMQGEGFKPNSS-SMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSL 952

Query: 177  LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY-- 234
            +D+Y K   +  A  VF++M  RN   W+S+V+G+    ++E+AL L  + +  G++   
Sbjct: 953  IDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL 1012

Query: 235  ----------------------NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
                                  N  +I+ ++ ACA L+ L +GK++H +  + GF  ++F
Sbjct: 1013 VTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVF 1072

Query: 273  AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             A++L+DMY+K   + +A+ VF  I+ K +  WN MI GF+      E + +F +MQ+ G
Sbjct: 1073 VATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG 1132

Query: 333  LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            + P+  T+ ++LSAC + G++ +G  YFD M+  + ++P + HY CM+D+LGRAG + EA
Sbjct: 1133 VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 1192

Query: 393  YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            +DLI  MP    A++WG+LL SCR ++NL  AE AAK LF +EP+N+ N++L+ N+Y+  
Sbjct: 1193 WDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIF 1252

Query: 453  RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
             RWE++   R+L+  + V+  +  SW++I  +        + HP   +IY +L +LV EM
Sbjct: 1253 NRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEM 1312

Query: 505  KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
            KKLGY P+      ++++  KQ++L+ H+EKLA+T+GL+ +  G PIR++KN RIC DCH
Sbjct: 1313 KKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCH 1372

Query: 565  SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S  K+ S +  RE  +RD  RFHHF  G CSC DFW
Sbjct: 1373 SAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 191/416 (45%), Gaps = 67/416 (16%)

Query: 40   LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            L++C R      G   H  +I  G + D      L+NFY +C  +  A +VF EMP    
Sbjct: 681  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA 740

Query: 100  VSWNTIIGSYTTNGREQEAVALFINM---LREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
            + WN  I     + + Q+ V LF  M     + +T     T+  VL AC     +   KQ
Sbjct: 741  LLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA----TIVRVLQACGKMGALNAAKQ 796

Query: 157  LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA-----GF 211
            +H +  +  +D +V +   L+ +Y+K G +  A RVF+SM  RN  +W+SM++     GF
Sbjct: 797  IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGF 856

Query: 212  VQN------EL------------------------YEEALILFRRAQVLGLEYNQFTISS 241
            + +      EL                         EE L + +R Q  G + N  +++S
Sbjct: 857  LNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTS 916

Query: 242  VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            V+ A + L  L  GK+ H  + + GF  +++  +SL+DMY K   +  A  VF  ++ +N
Sbjct: 917  VLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRN 976

Query: 302  VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS---------------- 345
            +  WN+++SG+S      + + L  +M++ G+ P+  T+  ++S                
Sbjct: 977  IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNS 1036

Query: 346  --------ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
                    AC+ + +++KGK    L ++ +  + +VF  + +ID+  ++  +  A+
Sbjct: 1037 ASITCLLRACASLSLLQKGKEIHCLSIR-NGFIEDVFVATALIDMYSKSSSLKNAH 1091



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 161/400 (40%), Gaps = 66/400 (16%)

Query: 65   NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
            N D    N++ ++       S A   +  +P R  + WN+ +  + ++      V     
Sbjct: 605  NPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEEFKSSAGSLHIVLEVFK 663

Query: 125  MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
             L      +     S  L  C    D++   ++H   +K   D +V++  AL++ Y +C 
Sbjct: 664  ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 723

Query: 185  LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
             +  A++VF  MP    + W+  +   +Q+E  ++ + LFR+ Q   L+    TI  V+ 
Sbjct: 724  GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 245  ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            AC  + AL   KQ+H  + + G  S++   + L+ MY+K G +  A  VF  +E +N   
Sbjct: 784  ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 843

Query: 305  WNTMISGFSR-----------------------------------HARSVEVMILFEKMQ 329
            WN+MIS ++                                    H    EV+ + ++MQ
Sbjct: 844  WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 903

Query: 330  QAGLHPNEQTYISVLSACSHIGMVEKGK-------------------SYFDLMVKQHNVL 370
              G  PN  +  SVL A S +G +  GK                   S  D+ VK H++ 
Sbjct: 904  GEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLX 963

Query: 371  P-----------NVFHYSCMIDILGRAGLIHEAYDLILNM 399
                        N+F ++ ++      G+  +A  L+  M
Sbjct: 964  SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 1003


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 331/556 (59%), Gaps = 9/556 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  HA++   G+ +D + +N L+   +K   +  A  +F++M +R  VSW+ +IG +  N
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G  +     F  ++R G  P   F++  V+ AC     +   + +H   LK  +  + FV
Sbjct: 80  GDYERCFQTFRELIRAGSKP-DNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFV 138

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
            + L+D+YAKCG+I +A ++F+ MP+++ VT + M+AG+ +     E+ +LF + +  G 
Sbjct: 139 CSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGF 198

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             ++  + +++ ACA L A+ + + VH  +C   +  ++   ++++DMYAKCG +  +  
Sbjct: 199 VPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSRE 258

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F  +E+KNV+ W+ MI  +  H +  E + LF  M  +G+ PN  T+IS+L ACSH G+
Sbjct: 259 IFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGL 318

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           V+ G   F LM   + V P+V HY+CM+D+LGRAG + +A  LI NM  +    +W + L
Sbjct: 319 VDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFL 378

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
            +CR +R ++LAE AAK L  ++  N G+++LLSNIYA   RW++VA+ R L+    +KK
Sbjct: 379 GACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKK 438

Query: 473 EKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
               +W+E+         G  +H R  EIY  L+ L ++++  GY P+T   LHDV++  
Sbjct: 439 IPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEV 498

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K  +L  HSEKLA+ FGL+    G PIRI KNLR+CGDCHSF K  S I  R+ IVRD N
Sbjct: 499 KLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDAN 558

Query: 585 RFHHFTNGSCSCWDFW 600
           RFHHF  G CSC D+W
Sbjct: 559 RFHHFKEGICSCGDYW 574



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 142/266 (53%), Gaps = 2/266 (0%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           R++F+ KQ+H       +  ++ V   LL + AK   +  A  +F  M ER+ V+WS M+
Sbjct: 14  RNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMI 73

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            GFV+N  YE     FR     G + + F++  VI AC     LI G+ +H+ + K G  
Sbjct: 74  GGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLH 133

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            + F  S+LVDMYAKCG + +A  +F  + +K++V    MI+G++   +  E  +LF++M
Sbjct: 134 LDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQM 193

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           ++ G  P++   +++++AC+ +G + K +   D +  +   L +V   + MID+  + G 
Sbjct: 194 RRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL-DVELGTAMIDMYAKCGS 252

Query: 389 IHEAYDLILNMPFDATASMWGSLLAS 414
           I  + ++   M      S W +++ +
Sbjct: 253 IDSSREIFDRMEQKNVIS-WSAMIGA 277



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 154/289 (53%), Gaps = 4/289 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L   +++C      + G++ H+ ++  GL+ D    + L++ Y+KCG+I  A+++FD M
Sbjct: 103 SLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRM 162

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ +V+   +I  Y   G+  E+  LF  M R+G  P  +  + +++ ACA    + + 
Sbjct: 163 PKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVP-DKVAMVTIVNACAKLGAMNKA 221

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H +        +V +GTA++D+YAKCG I  +  +F+ M ++N ++WS+M+  +  +
Sbjct: 222 RLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYH 281

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
               EAL LF      G+  N+ T  S++ AC+    +  G Q+ +++  + G   ++  
Sbjct: 282 GQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKH 341

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV 321
            + +VD+  + G +  A  +   +E EK+  +W   + G  R  R V++
Sbjct: 342 YTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFL-GACRIHRQVDL 389


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 331/573 (57%), Gaps = 40/573 (6%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + + SN +I  + K G +  A K+F+EM Q+ +VSW+ +I  Y  N   +EA+ LF  M 
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA----- 181
             G     E  V SVL AC+    V   K +H   +K  ++  V +  AL+ +Y+     
Sbjct: 282 ANG-IMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEV 340

Query: 182 --------------------------KCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
                                     KCG I  A  +F+SMP+++ V+WS+M++G+ Q +
Sbjct: 341 VTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQD 400

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
            + E L+LF+  Q+ G + ++  + SVI AC  LAAL QGK +HA + K G   N+   +
Sbjct: 401 RFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGT 460

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +L++MY K GCV DA  VF G+EEK V  WN +I G + +    + +  F +M++ G+ P
Sbjct: 461 TLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTP 520

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           NE T+++VL AC H+G+V++G  +F+ M+++H + PN+ HY CM+D+LGRAG++ EA +L
Sbjct: 521 NEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEEL 580

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           I +MP     S WG+LL +C+ Y + E  E   ++L  + PD+ G ++LLSNIYA+   W
Sbjct: 581 IESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNW 640

Query: 456 EEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKL 507
            +V   R ++R   V K    S +E        + G + HP+   I   L+++ +++K  
Sbjct: 641 VDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLE 700

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY P+T     D+++  K+  L  HSEKLA+ FGL+ + P  PIRI+KNLRIC DCH+  
Sbjct: 701 GYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAA 760

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           K  S+   RE +VRD +RFHHF  GSCSC D+W
Sbjct: 761 KLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 201/414 (48%), Gaps = 73/414 (17%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T     QSC+   A   GK     ++ +G ++D    N LIN Y+ CG +S ARK
Sbjct: 123 AADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARK 182

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD      +VSWN+++  Y   G  +EA                              +
Sbjct: 183 VFDGSSVLDMVSWNSMLAGYVLVGNVEEA------------------------------K 212

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           DV++             +RNV    +++ ++ K G + +A ++F  M +++ V+WS++++
Sbjct: 213 DVYD----------RMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALIS 262

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-- 267
            + QNE+YEEALILF+     G+  ++  + SV+ AC+ L  +I GK VH ++ K G   
Sbjct: 263 CYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIET 322

Query: 268 --------------------GSNMFAAS---------SLVDMYAKCGCVVDAYFVFSGIE 298
                                  +F+ S         S++  Y KCG +  A  +F  + 
Sbjct: 323 YVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMP 382

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           +K+ V W+ MISG+++  R  E ++LF++MQ  G  P+E   +SV+SAC+H+  +++GK 
Sbjct: 383 DKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGK- 441

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +    ++++ +  N+   + +I++  + G + +A ++   +  +   S W +L+
Sbjct: 442 WIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALI 494



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 156/335 (46%), Gaps = 45/335 (13%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS--GARKV 90
           L  L+  LQ C   +   +     +++I  G   D+  ++ L+ F ++   I+   + ++
Sbjct: 26  LPILETHLQKCQNIK---QFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQI 82

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F  +        NT++  Y       +A+ ++  ML E       +T   +  +C+ +  
Sbjct: 83  FSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFML-ESNVAADNYTYPILFQSCSIRLA 141

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            F+ K +    LK   D +V++   L+++YA CG +SDA +VF+     + V+W+SM+AG
Sbjct: 142 EFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAG 201

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +V     EEA  ++ R                                           N
Sbjct: 202 YVLVGNVEEAKDVYDRMP---------------------------------------ERN 222

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           + A++S++ ++ K G V +A  +F+ +++K++V W+ +IS + ++    E +ILF++M  
Sbjct: 223 VIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNA 282

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            G+  +E   +SVLSACS + +V  GK    L+VK
Sbjct: 283 NGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVK 317



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 41/246 (16%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I+ + ++F  +   N    ++M+ G++Q     +A+ +++      +  + +T   +  +
Sbjct: 76  INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+   A   GK +   + K GF S+++  ++L++MYA CG + DA  VF G    ++V W
Sbjct: 136 CSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSW 195

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N+M++G+                              VL     +G VE+ K  +D M +
Sbjct: 196 NSMLAGY------------------------------VL-----VGNVEEAKDVYDRMPE 220

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
           +     NV   + MI + G+ G + EA  L   M      S W +L++        E A 
Sbjct: 221 R-----NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVS-WSALISCYEQNEMYEEAL 274

Query: 426 IAAKQL 431
           I  K++
Sbjct: 275 ILFKEM 280


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 350/606 (57%), Gaps = 46/606 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG----------------- 82
           L+SCA+ +A   G+  HA+++ +G   D      LI+ Y++ G                 
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 83  -----LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
                LI+G         ARKVFDE+ +R +VSWN +I  Y  NGR +EA+ LF  M+R 
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA----AMDRNVFVGTALLDVYAKCG 184
              P  E T+ SV+ ACA    +   +Q+H +            ++ +  AL+D+Y+KCG
Sbjct: 191 NVRP-DEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            +  A  +FE +  ++ V+W++++ G+    LY+EAL+LF+     G   N  T+ SV+ 
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309

Query: 245 ACAGLAALIQGKQVHAVLCKT--GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A+ VF+ +  +++
Sbjct: 310 ACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSL 369

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
             WN MI GF+ H R+     LF +M+   + P++ T++ +LSACSH G+++ G+  F  
Sbjct: 370 SSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKS 429

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M + +N+ P + HY CMID+LG +GL  EA ++I  MP +    +W SLL +C+ + NLE
Sbjct: 430 MTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLE 489

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           LAE  A++L  +EP+N+G+++LLSNIYA   RWE+VAR R ++    +KK    S +E+ 
Sbjct: 490 LAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVD 549

Query: 483 --------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
                   G + HPR  EIY  LE++  ++++ G+ P+T   L ++E+  K+  L HHSE
Sbjct: 550 SVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSE 609

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           KLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE + RD  RFHHF +G C
Sbjct: 610 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVC 669

Query: 595 SCWDFW 600
           SC D+W
Sbjct: 670 SCCDYW 675



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 195/364 (53%), Gaps = 42/364 (11%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  VF+ + +  ++ WNT++  + ++     A+ +++ M+  G  P S ++   +L +CA
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNS-YSFPFLLKSCA 75

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES----------- 195
             +   E +Q+H   LK     + +V T+L+ +YA+ G + DA +VF++           
Sbjct: 76  KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTA 135

Query: 196 --------------------MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
                               + ER+ V+W++M+ G+V+N  YEEAL LF+      +  +
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKT----GFGSNMFAASSLVDMYAKCGCVVDAY 291
           + T+ SV+ ACA   ++  G+QVH+ +       GF S++   ++L+D+Y+KCG V  A+
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAF 255

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F G+  K+VV WNT+I G++      E ++LF++M ++G  PN+ T +SVL AC+H+G
Sbjct: 256 GLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLG 315

Query: 352 MVEKGK---SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
            ++ G+    Y D  +K   V       + +ID+  + G I  A+ +  +M + + +S W
Sbjct: 316 AIDIGRWIHVYIDKKLK--GVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS-W 372

Query: 409 GSLL 412
            +++
Sbjct: 373 NAMI 376



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 35/259 (13%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  VFE++ E N + W++M+ G   +     AL ++ R   LG   N ++   ++ +CA 
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG------------ 296
             A  +G+Q+HA + K G G + +  +SL+ MYA+ G + DA  VF              
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 297 -------------------IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
                              I E++VV WN MI+G+  + R  E + LF++M +  + P+E
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 338 QTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            T +SV+SAC+  G +E G+   S+ D     H    ++   + +ID+  + G +  A+ 
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256

Query: 395 LILNMPFDATASMWGSLLA 413
           L   +      S W +L+ 
Sbjct: 257 LFEGLSCKDVVS-WNTLIG 274


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 347/578 (60%), Gaps = 24/578 (4%)

Query: 38  ATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKVFDE 93
           +++ S   E   VR G+  H+  + +GL +D+  S  L++ Y+K  +   +  ARKVF  
Sbjct: 250 SSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKT 309

Query: 94  MPQRCIVSWNTIIGSYTTNG-REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           MP+  ++SW  +I  Y  +G +E   +ALF  ML E   P +  T S++L ACA   D  
Sbjct: 310 MPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRP-NHITYSNLLKACANLSDQD 368

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             +Q+H   LK ++     VG AL+ +YA+ G + +A + F+ + E N ++ S  V    
Sbjct: 369 SGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETER 428

Query: 213 QNELYEEALILFRRAQVLGLE--YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            N            +++ G++   + FT +S++ A A +  L +G+++HA+  K GF S+
Sbjct: 429 NNASCS--------SKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSD 480

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
              ++SLV MYA+CG + DA   F  +++ NV+ W ++ISG ++H  + + + +F  M  
Sbjct: 481 QGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMIL 540

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG+ PN+ TYI+VLSACSH+G+V++GK +F  M K H +LP + HY+C++D+L R+GL+ 
Sbjct: 541 AGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVE 600

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA   I  MP  A A +W +LL++CR Y N E+ EIAA  +  +EP +   ++LLSN+YA
Sbjct: 601 EARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYA 660

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVE 502
               W+EVAR R L+RD  + KE   SW+++         G  +HP   +IY+KL  L+ 
Sbjct: 661 DAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIR 720

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           E+K +GY P+T   LHD+ +  K++ L+ HSEK+A+ FGL+      P+RI KNLR+C D
Sbjct: 721 EIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCAD 780

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CHS +K+ S+  GRE I+RD NRFH   +G CSC ++W
Sbjct: 781 CHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 184/367 (50%), Gaps = 22/367 (5%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEM-PQR 97
           L S AR      G+  H +++    L+ D + +N L+  YSKCG +  AR+VFD+M   R
Sbjct: 47  LTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVR 106

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSW  +      NG E+E++ L   ML  G  P + FT+      CAA R  F  +  
Sbjct: 107 DLVSWTAMASCLARNGAERESLRLLGEMLELGLRP-NAFTL------CAAARACFPQELF 159

Query: 158 HV-------FALKAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            +       F LK      +V VG AL+D++A+ G +  A RVF+ + ER  V W+ ++ 
Sbjct: 160 RLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLIT 219

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +VQ     + + LF      G E + +++SS+I AC  L ++  G+Q+H+V  + G  S
Sbjct: 220 RYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVS 279

Query: 270 NMFAASSLVDMYAKCG---CVVDAYFVFSGIEEKNVVLWNTMISGFSRHA-RSVEVMILF 325
           +   +  LVDMYAK      +  A  VF  +   NV+ W  +ISG+ +   +   VM LF
Sbjct: 280 DSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALF 339

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
            +M    + PN  TY ++L AC+++   + G+     ++K      NV   + ++ +   
Sbjct: 340 REMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVG-NALVSMYAE 398

Query: 386 AGLIHEA 392
           +G + EA
Sbjct: 399 SGCMEEA 405


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 356/609 (58%), Gaps = 46/609 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +LQ+ L S AR+ +P+  K  HA+II  GLN      N L+N Y KCGLI  A ++FD +
Sbjct: 6   SLQSQLCSAARQ-SPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDAL 64

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRDVF 152
           P+R  V+W +++ +   + R   A+++  ++L  G  P   F  +S++ ACA      V 
Sbjct: 65  PRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHP-DHFVFASLVKACANLGVLHVK 123

Query: 153 ECKQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
           + KQ+H  F L    D +V V ++L+D+YAK GL      VF+S+   N ++W++M++G+
Sbjct: 124 QGKQVHARFFLSPFSDDDV-VKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGY 182

Query: 212 VQNELYEEALILFRR----------AQVLGLEY----------------------NQFTI 239
            ++    EA  LFR+          A + GL                        +   +
Sbjct: 183 ARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVL 242

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           SSV+ ACA LA    GKQ+H V+   G+ S +F +++L+DMYAKC  +V A ++F  +  
Sbjct: 243 SSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCR 302

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K+VV W ++I G ++H ++ E + L+++M  AG+ PNE T++ ++ ACSH G+V KG++ 
Sbjct: 303 KDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTL 362

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F  MV+ H + P++ HY+C++D+  R+G + EA +LI  MP +     W +LL+SC+ + 
Sbjct: 363 FRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHG 422

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N ++A   A  L  ++P++  +++LLSNIYA    WE+V++ RKL+   E KK    S +
Sbjct: 423 NTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCI 482

Query: 480 EI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           ++         G+ +HP   EI   + +L EEM+K GY P+T   LHD++   K+  L  
Sbjct: 483 DLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFW 542

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSE+LA+ +GL+   PG  IRI+KNLR+CGDCH+ +K  S I  RE  VRD  R+HHF +
Sbjct: 543 HSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKD 602

Query: 592 GSCSCWDFW 600
           G+CSC DFW
Sbjct: 603 GNCSCNDFW 611



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 96/183 (52%), Gaps = 3/183 (1%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           + T+   L + + +CA       GK  H  +I +G  +    SN LI+ Y+KC  +  A+
Sbjct: 235 SVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAK 294

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            +F EM ++ +VSW +II     +G+ +EA+AL+  M+  G  P +E T   ++ AC+  
Sbjct: 295 YIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKP-NEVTFVGLIHACSHA 353

Query: 149 RDVFECKQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
             V + + L         +  ++   T LLD++++ G + +A  +  +MP   +E TW++
Sbjct: 354 GLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAA 413

Query: 207 MVA 209
           +++
Sbjct: 414 LLS 416


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 345/559 (61%), Gaps = 9/559 (1%)

Query: 50   VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
            V GK  HA  +    + +      L++ Y+KCG I  AR  F+ +    ++ W+ +I  Y
Sbjct: 649  VLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRY 708

Query: 110  TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
                + ++A  LFI M+R   +P +EF++SSVL ACA    +   KQ+H  A+K   +  
Sbjct: 709  AQCNQNEQAFELFIRMMRSSVSP-NEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESE 767

Query: 170  VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            +FVG AL+D+YAKC  +  +  +F S+ + NEV+W++++ G+ ++   E AL +FR  + 
Sbjct: 768  LFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRA 827

Query: 230  LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
              +   Q T SSV+ ACA  A++    QVH ++ K+ F S+   ++SL+D YAKCGC+ D
Sbjct: 828  ASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRD 887

Query: 290  AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
            A  +F  ++E ++V WN +ISG++ H ++     LF+ M +  +  N+ T++++LS C  
Sbjct: 888  AREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGS 947

Query: 350  IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
             G+V +G S FD M   H + P++ HY+C++ +LGRAG +++A + I ++P   +A +W 
Sbjct: 948  TGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWR 1007

Query: 410  SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
            +LL+SC  ++N+EL   +A+++  +EP +   ++LLSN+Y+A    ++VA  RK +R+  
Sbjct: 1008 ALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIG 1067

Query: 470  VKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            V+KE   SWVEIKG+         +HP +  I + LE L  +  + GY P+T+  LHD+E
Sbjct: 1068 VRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLE 1127

Query: 522  DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
            + +K  +L  HSE+LAL +GL+   PG PIRIMKNLR C DCH+  K  S+I  +E IVR
Sbjct: 1128 EEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVR 1187

Query: 582  DLNRFHHFTNGSCSCWDFW 600
            D+NRFHHF  G+CSC D+W
Sbjct: 1188 DINRFHHFEEGTCSCGDYW 1206



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 186/328 (56%), Gaps = 3/328 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           LQ C        G+  H  ++  G     D   +N+L+N Y+K G    A +VFD +P+R
Sbjct: 435 LQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPER 494

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VS+ T++  +   G  +EA ALF  +  EG    ++F +++VL    A   +     +
Sbjct: 495 NMVSFVTLVQGHALRGEFEEASALFQRLRWEGHE-VNQFVLTTVLKLVVAMDTLGLAWGV 553

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A K   DRN FVG+AL+D Y+ CG++SDA RVF+ +  ++ V W++MV+ + +N+  
Sbjct: 554 HACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCP 613

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           E  L +F + +V   + N F ++SV+ A   L++++ GK +HA   KT + +      +L
Sbjct: 614 ENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGAL 673

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +DMYAKCG + DA   F  +   +V+LW+ MIS +++  ++ +   LF +M ++ + PNE
Sbjct: 674 LDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNE 733

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVK 365
            +  SVL AC+++ +++ GK   +  +K
Sbjct: 734 FSLSSVLQACANMPLLDLGKQIHNHAIK 761


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 343/611 (56%), Gaps = 46/611 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SCAR  +   G   H+ II  G  +D    N LI+ YS  G ++ AR +FDE 
Sbjct: 113 TFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDES 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VS+NT+I  Y    + + A+ LF  M   G  P  EFT  ++   C+   +    
Sbjct: 173 LVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILP-DEFTFVALFSVCSVLNEPNVG 231

Query: 155 KQLH--VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--------------- 197
           KQ+H  V+    ++D N+ + +A++D+YAKCGLI+ A RVF +M                
Sbjct: 232 KQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGY 291

Query: 198 -----------------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
                            ER+ ++W++M++G+ Q     EAL LF+  + LG++ ++ T+ 
Sbjct: 292 ARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLV 351

Query: 241 SVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFS--GI 297
           +V+ ACA L A   GK+++    + G F  N    ++++DMYAKCG +  A  +F   G 
Sbjct: 352 AVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGK 411

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             K   ++N+MI+G ++H      + +F ++   GL P+E T++ VL AC H G++E+GK
Sbjct: 412 NMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGK 471

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
             F+ M   + + P + HY CM+D+LGR G + EAYDL+  MPF+A + +W +LL++CR 
Sbjct: 472 KLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRT 531

Query: 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477
           + N+++ EIA ++L  ME  +   ++LLSNI A   +WEE  + RK++ D  ++K    S
Sbjct: 532 HGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWS 591

Query: 478 WVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL 529
           ++E+ G         ++HP+  EI   L+ +   +K  GY P T   + D+++  K+ ++
Sbjct: 592 YIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVV 651

Query: 530 IHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHF 589
            +HSEKLAL FGLM   P   IRI+KNLRIC DCH   K  S I GRE  VRD  RFHHF
Sbjct: 652 SYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHF 711

Query: 590 TNGSCSCWDFW 600
            NGSCSC DFW
Sbjct: 712 RNGSCSCMDFW 722



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 219/438 (50%), Gaps = 43/438 (9%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQ 96
           L+SC   ++  +G   HA+ I  GL++   + + LI+F+S  G   G   +R +F ++  
Sbjct: 16  LESC---KSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDC 72

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
             +  WNT+I  Y+ +   +EA+ L+++M+ +G  P + FT   +L +CA    +    +
Sbjct: 73  PNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHE 132

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H   +K   + ++FV  AL+ +Y+  G ++ A  +F+    R+ V++++M+ G+ +   
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 192

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT--GFGSNMFAA 274
            E AL LF   Q  G+  ++FT  ++   C+ L     GKQ+HA + K      SN+   
Sbjct: 193 PESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLK 252

Query: 275 SSLVDMYAKCGCVVDAYFVFSG--------------------------------IEEKNV 302
           S++VDMYAKCG +  A  VFS                                 + E++V
Sbjct: 253 SAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDV 312

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           + W  MISG+S+  +  E + LF++M+  G+ P+E T ++VLSAC+ +G  + GK  +  
Sbjct: 313 ISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQ 372

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRNYRNL 421
            ++      N    + ++D+  + G I  A ++   +  +  T  ++ S++A    +   
Sbjct: 373 YIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLG 432

Query: 422 ELAEIAAKQLF--GMEPD 437
           E A    ++L   G++PD
Sbjct: 433 ETAITVFRELISTGLKPD 450


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/589 (35%), Positives = 344/589 (58%), Gaps = 42/589 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTS-NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++  A+I+   + +  + S N +I  Y + G++  A+++FD MP R  +SW  +I  Y 
Sbjct: 335 GRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYA 394

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NGR +EA+ L   + R G    S  +++S   AC+    +   +Q+H  A+KA    N 
Sbjct: 395 QNGRSEEALDLLQALHRNGML-PSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNS 453

Query: 171 FVGTALLDVYAKC-------------------------------GLISDASRVFESMPER 199
           +V  AL+ +Y KC                                ++ DA  +F++M  R
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR 513

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V+W+++++ + Q E  +EA+  F+       + N   ++ ++  C GL +   G+Q+H
Sbjct: 514 DVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIH 573

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            V  K G  S +  A++L+ MY KCGC  D++ VF  +EE+++  WNT I+G ++H    
Sbjct: 574 TVAIKHGMDSELIVANALMSMYFKCGCA-DSHKVFDSMEERDIFTWNTFITGCAQHGLGR 632

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + ++E M+  G+ PNE T++ +L+ACSH G+V++G  +F  M + + + P + HY+CM
Sbjct: 633 EAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACM 692

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGR G +  A   I +MP +    +W +LL +C+ ++N E+   AA++LF  EP NA
Sbjct: 693 VDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNA 752

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           GN+++LSNIY++   W EVA  RK+++   V KE   SW++I+        G + H +I 
Sbjct: 753 GNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIE 812

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           EI   L+ L   ++  GY P+TE  LHD+++ +K+  L++HSEKLA+ +GL+    G+PI
Sbjct: 813 EIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPI 872

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +IMKNLRICGDCH+F+KF S +  R+  +RD NRFHHF NGSCSC DFW
Sbjct: 873 QIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 50/358 (13%)

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
           T+ IL++ Y++ G +  AR+VFD MP+R  V+WN ++  Y  NG    A  LF       
Sbjct: 97  TATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLF------- 149

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
                                             A   R+V    +++  Y     + DA
Sbjct: 150 ---------------------------------DAMPSRDVTSWNSMVTGYCHSRQMVDA 176

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
             +F+ MP+RN VTW+ M++G+V+ E + +   +FR     G   +Q   +SV+ A  GL
Sbjct: 177 WNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGL 236

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD-AYFVFSGIEEKNVVLWNTM 308
             L   + +  ++ KTGF S++   +S++++Y +    +D A   F G+ E+N   W+TM
Sbjct: 237 QDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTM 296

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+  S H   ++  I           P++   ++ L+ C   G + + +  F+ +     
Sbjct: 297 IAALS-HGGRIDAAIAVYGRDPVKSIPSQTALLTGLARC---GRITEARILFEQIPD--- 349

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             P V  ++ MI    + G++ EA +L   MPF  T S  G +    +N R+ E  ++
Sbjct: 350 --PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDL 405



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 155/347 (44%), Gaps = 43/347 (12%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSK-CGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           +V    ++  G  +D +    ++N Y++    +  A K FD M +R   +W+T+I + + 
Sbjct: 243 EVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSH 302

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNV 170
            GR   A+A++      G+ P       + L    A+   + E + L     +   D  V
Sbjct: 303 GGRIDAAIAVY------GRDPVKSIPSQTALLTGLARCGRITEARIL----FEQIPDPIV 352

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
               A++  Y + G++ +A  +F+ MP RN ++W+ M+AG+ QN   EEAL L +     
Sbjct: 353 VSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRN 412

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC------ 284
           G+  +  +++S   AC+ + AL  G+QVH++  K G   N +  ++L+ MY KC      
Sbjct: 413 GMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYV 472

Query: 285 -------------------------GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
                                      + DA  +F  +  ++VV W T+IS +++  R  
Sbjct: 473 RQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGD 532

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           E +  F+ M      PN      +LS C  +G  + G+    + +K 
Sbjct: 533 EAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKH 579



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 44/348 (12%)

Query: 52  GKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+V  A+ +  G+   +T+  N +++ Y + G I+ AR++FD MP R + SWN+++  Y 
Sbjct: 109 GRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYC 168

Query: 111 TNGREQEAVALFINMLR-------------------------------EGKTPYSEFTVS 139
            + +  +A  LF  M +                               EG +P  +   +
Sbjct: 169 HSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASP-DQSNFA 227

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD-ASRVFESMPE 198
           SVL A    +D+   + L    LK   + +V +GT++L+VY +     D A + F+ M E
Sbjct: 228 SVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVE 287

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           RNE TWS+M+A        + A+ ++ R  V        +I S      GLA    G+  
Sbjct: 288 RNEYTWSTMIAALSHGGRIDAAIAVYGRDPVK-------SIPSQTALLTGLARC--GRIT 338

Query: 259 HA-VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
            A +L +      + + ++++  Y + G V +A  +F  +  +N + W  MI+G++++ R
Sbjct: 339 EARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGR 398

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           S E + L + + + G+ P+  +  S   ACSHIG +E G+    L VK
Sbjct: 399 SEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVK 446



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 139/307 (45%), Gaps = 35/307 (11%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC-------------------- 81
           +C+   A   G+  H+  +  G   ++   N LI+ Y KC                    
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 82  -----------GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
                       ++  AR +FD M  R +VSW TII +Y    R  EAV  F  ML E +
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
            P S   ++ +L  C         +Q+H  A+K  MD  + V  AL+ +Y KCG  +D+ 
Sbjct: 547 KPNSPI-LTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSH 604

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
           +VF+SM ER+  TW++ + G  Q+ L  EA+ ++   + +G+  N+ T   ++ AC+   
Sbjct: 605 KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAG 664

Query: 251 ALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTM 308
            + +G Q    + +  G    +   + +VD+  + G V  A  F++    E + V+W+ +
Sbjct: 665 LVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSAL 724

Query: 309 ISGFSRH 315
           +     H
Sbjct: 725 LGACKIH 731



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L   L  C    +   G+  H   I  G++++ + +N L++ Y KCG  + + KVFD M 
Sbjct: 553 LTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSME 611

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R I +WNT I     +G  +EA+ ++ +M   G  P +E T   +L AC+    V E  
Sbjct: 612 ERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLP-NEVTFVGLLNACSHAGLVDEGW 670

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYA-------KCGLISDASRVFESMP-ERNEVTWSSM 207
           Q        +M R+  + T LL+ YA       + G +  A +    MP E + V WS++
Sbjct: 671 QFF-----KSMSRDYGL-TPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSAL 724

Query: 208 VA 209
           + 
Sbjct: 725 LG 726



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 21/181 (11%)

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           + VH  L K+       A S+ +   A+ G + +A  VF  +  ++++ WN+MIS +   
Sbjct: 25  RSVHRALDKS-------AHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNS 77

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               +  ILF+ +       N +T   +LS  + +G V   +  FD M ++     N   
Sbjct: 78  GMLEDARILFDAISGG----NVRTATILLSGYARLGRVLDARRVFDGMPER-----NTVA 128

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           ++ M+    + G I  A  L   MP     S W S++    + R +    + A  LF   
Sbjct: 129 WNAMVSCYVQNGDITMARRLFDAMPSRDVTS-WNSMVTGYCHSRQM----VDAWNLFKQM 183

Query: 436 P 436
           P
Sbjct: 184 P 184


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/595 (36%), Positives = 339/595 (56%), Gaps = 29/595 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKII-GMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  + L +C+R      G+  HA ++    L  ++  ++ L++ Y+    ++ AR+VFD 
Sbjct: 284 TFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDM 343

Query: 94  MPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           +P+  R +  WN +I  Y   G ++EA+ LF  M  E     SE T+S VL ACA     
Sbjct: 344 VPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGF 403

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              + +H + +K  M  N FV  AL+D+YA+ G +  A R+F  +  R+ V+W++++ G 
Sbjct: 404 AGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGC 463

Query: 212 VQNELYEEALILFRRAQVLGLEY----------------NQFTISSVICACAGLAALIQG 255
           V      EA  L    Q+                     N  T+ +++  CA LAA  +G
Sbjct: 464 VVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARG 523

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           K++H    +    S++   S+LVDMYAKCGC+  +  VF  +  +NV+ WN +I  +  H
Sbjct: 524 KEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMH 583

Query: 316 ARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
               E + LF++M   G   PNE T+I+ L+ACSH G+V++G   F  M + H V P   
Sbjct: 584 GLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPD 643

Query: 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            ++C++D+LGRAG + EAY +I +M P +   S W SLL +CR +RN+EL E+AA++LF 
Sbjct: 644 LHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFE 703

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KR 485
           +EP  A +++LL NIY+A   W++    R  +R   V KE   SW+E+ G        + 
Sbjct: 704 LEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGES 763

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
           +HP  AE+++ ++ L E M++ GY P+T   LHDV++  K  +L +HSEKLA+ FGL+  
Sbjct: 764 SHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRA 823

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG  IR+ KNLR+C DCH   KF S++ GR+ ++RD+ RFHHF +GSCSC D+W
Sbjct: 824 PPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 177/365 (48%), Gaps = 22/365 (6%)

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
             N L+  Y++CG +  A  +F       R  VS+N++I +     + + A+    +ML 
Sbjct: 102 VGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLA 161

Query: 128 EGKTPYSEFTVSSVLCACA---AKRDVFECKQLHVFALKAAM---DRNVFVGTALLDVYA 181
           EG+   S FT+ SVL AC+           ++ H FALK       R  F   ALL +YA
Sbjct: 162 EGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYA 221

Query: 182 KCGLISDASRVFESM-----PERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           + GL+ DA  +F +      P   + VTW++M++  VQ     EA+ +      LG+  +
Sbjct: 222 RLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPD 281

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVF 294
             T +S + AC+ L  L  G+++HAV+ K     +N F AS+LVDMYA    V  A  VF
Sbjct: 282 GVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVF 341

Query: 295 SGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIG 351
             + E  + + +WN MI G+++     E + LF +M+ +AG  P+E T   VL AC+   
Sbjct: 342 DMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSE 401

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGS 410
               GK      V +  +  N F  + ++D+  R G +  A  +   + P D  +  W +
Sbjct: 402 GF-AGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVS--WNT 458

Query: 411 LLASC 415
           L+  C
Sbjct: 459 LITGC 463



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 177/358 (49%), Gaps = 24/358 (6%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A   +T+   L +CAR       +  H  ++  G+  +    N L++ Y++ G +  AR+
Sbjct: 384 APSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARR 443

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM------------LREGKTPY---S 134
           +F  +  R +VSWNT+I      G   EA  L   M              EG+      +
Sbjct: 444 IFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPN 503

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
             T+ ++L  CAA       K++H +A++ A++ ++ VG+AL+D+YAKCG ++ +  VF+
Sbjct: 504 NITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFD 563

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALI 253
            +P RN +TW+ ++  +  + L +EA+ LF      G    N+ T  + + AC+    + 
Sbjct: 564 RLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVD 623

Query: 254 QGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMIS 310
           +G ++ H +    G        + +VD+  + G + +AY + + +E  E+ V  W++++ 
Sbjct: 624 RGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLL- 682

Query: 311 GFSRHARSVEV-MILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQ 366
           G  R  R+VE+  +  E++ +  L P E + Y+ + +  S  GM +K  +    M +Q
Sbjct: 683 GACRLHRNVELGEVAAERLFE--LEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQ 738



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 17/243 (6%)

Query: 157 LHVFALKAAM--DRNVFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFV 212
           LH  AL+ A+    +  VG ALL  YA+CG +  A  +F +     R+ V+++S+++   
Sbjct: 85  LHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALC 144

Query: 213 QNELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQ---GKQVHAVLCKTGF- 267
               +E AL   R     G  + + FT+ SV+ AC+ L        G++ HA   K GF 
Sbjct: 145 LFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFL 204

Query: 268 --GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK------NVVLWNTMISGFSRHARSV 319
             G   F  ++L+ MYA+ G V DA  +F            +VV WNTMIS   +  R  
Sbjct: 205 DEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCA 264

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + +   M   G+ P+  T+ S L ACS + M+  G+    +++K  ++  N F  S +
Sbjct: 265 EAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASAL 324

Query: 380 IDI 382
           +D+
Sbjct: 325 VDM 327


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/547 (38%), Positives = 329/547 (60%), Gaps = 11/547 (2%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           GL++D      LI+ YSKCG     R +FD++ Q  ++S+N +I  YT N   + AV LF
Sbjct: 244 GLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             +L  G+   S  T+  ++        +   + +   +LK  +     V TAL  VY +
Sbjct: 304 RELLASGQRVNSS-TLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCR 362

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
              +  A ++F+  PE++  +W++M++G+ QN L + A+ LF+   +  L  N  T++S+
Sbjct: 363 LNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQE-MMPQLSPNPVTVTSI 421

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + ACA L AL  GK VH ++      SN++ +++LVDMYAKCG +V+A  +F  + +KNV
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WN MI+G+  H    E + LF +M Q+G+ P   T++S+L ACSH G+V +G   F  
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHS 541

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M   +   P   HY+CM+DILGRAG +  A + I  MP +   ++WG+LL +C  ++N E
Sbjct: 542 MANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE 601

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI- 481
           +A +A+K+LF ++P+N G ++LLSNIY+ +R + + A  R++++  ++ K    + +EI 
Sbjct: 602 MANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEID 661

Query: 482 -------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPET-EHDLHDVEDSRKQELLIHHS 533
                   G R+HP+   I+  LEKL  +M++ GY+ ET    LHDVED  K+ ++  HS
Sbjct: 662 DQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHS 721

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  IRI+KNLR+C DCH+  KF S+I  R  +VRD NRFHHF NG 
Sbjct: 722 EKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGI 781

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 782 CSCGDYW 788



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 183/362 (50%), Gaps = 4/362 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G + HA  I  G+ ++    + +++ Y K      ARKVFD MP+R  V WNT+I  ++ 
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N   ++++ +F++ML  G + +   T+++VL A A  ++      +   A K  +  +V+
Sbjct: 192 NSYFEDSIRVFVDMLDVGLS-FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V T L+ +Y+KCG       +F+ + + + +++++M++G+  N   E A+ LFR     G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              N  T+  +I        L   + +  +  K G       +++L  +Y +   V  A 
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F    EK++  WN MISG++++  +   + LF++M    L PN  T  S+LSAC+ +G
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  GK +   ++K   +  NV+  + ++D+  + G I EA  L  ++  D     W ++
Sbjct: 430 ALSIGK-WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL-FDLMVDKNVVTWNAM 487

Query: 412 LA 413
           + 
Sbjct: 488 IT 489



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 199/397 (50%), Gaps = 7/397 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
            A++I  G++ D  +   L + +   G ++  R++F+++ +  +  +N +I  ++ NG  
Sbjct: 34  QAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLP 93

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           + ++ L+ ++ ++       FT +  + A +   D      LH  ++   +  N+FVG+A
Sbjct: 94  KSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSA 153

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           ++D+Y K      A +VF+ MPER+ V W++M++GF +N  +E+++ +F     +GL ++
Sbjct: 154 IVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFD 213

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+++V+ A A L     G  +  +  K G  S+++  + L+ +Y+KCG       +F 
Sbjct: 214 STTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFD 273

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I++ +++ +N MISG++ +  +   + LF ++  +G   N  T + ++        ++ 
Sbjct: 274 QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQL 333

Query: 356 GKSYFDLMVKQHNVL-PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
            +   +L +K   +L P+V   + +  +  R   +  A  L    P  + AS W ++++ 
Sbjct: 334 SRLIQNLSLKIGIILQPSV--STALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMIS- 389

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
              Y    L + A      M P  + N + +++I +A
Sbjct: 390 --GYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSA 424



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA+  A   GK  H  I    L ++   S  L++ Y+KCG I  AR++FD M
Sbjct: 417 TVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V+WN +I  Y  +G  +EA+ LF  ML+ G  P +  T  S+L AC+    V E 
Sbjct: 477 VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPP-TGVTFLSILYACSHSGLVSEG 535

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
            ++ H  A              ++D+  + G +++A    E MP E     W +++  
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 19/173 (10%)

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             L Q  Q+ A L   G   ++ + + L   +   G V     +F+ + + ++ L+N +I
Sbjct: 25  TTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLI 84

Query: 310 SGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACS-----HIGMVEKGKSYFDLM 363
            GFS +      + L+  + ++  L P+  TY   +SA S      +G++    S  D  
Sbjct: 85  RGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVD-- 142

Query: 364 VKQHNVLPNVFHYSCMIDI---LGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
                V  N+F  S ++D+     RA L  + +D+   MP   T  +W ++++
Sbjct: 143 ----GVASNLFVGSAIVDLYFKFTRAELARKVFDV---MPERDTV-LWNTMIS 187


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/547 (38%), Positives = 329/547 (60%), Gaps = 11/547 (2%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           GL++D      LI+ YSKCG     R +FD++ Q  ++S+N +I  YT N   + AV LF
Sbjct: 244 GLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             +L  G+   S  T+  ++        +   + +   +LK  +     V TAL  VY +
Sbjct: 304 RELLASGQRVNSS-TLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCR 362

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
              +  A ++F+  PE++  +W++M++G+ QN L + A+ LF+   +  L  N  T++S+
Sbjct: 363 LNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQE-MMPQLSPNPVTVTSI 421

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + ACA L AL  GK VH ++      SN++ +++LVDMYAKCG +V+A  +F  + +KNV
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WN MI+G+  H    E + LF +M Q+G+ P   T++S+L ACSH G+V +G   F  
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHS 541

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M   +   P   HY+CM+DILGRAG +  A + I  MP +   ++WG+LL +C  ++N E
Sbjct: 542 MANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE 601

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI- 481
           +A +A+K+LF ++P+N G ++LLSNIY+ +R + + A  R++++  ++ K    + +EI 
Sbjct: 602 MANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEID 661

Query: 482 -------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPET-EHDLHDVEDSRKQELLIHHS 533
                   G R+HP+   I+  LEKL  +M++ GY+ ET    LHDVED  K+ ++  HS
Sbjct: 662 DQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHS 721

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  IRI+KNLR+C DCH+  KF S+I  R  +VRD NRFHHF NG 
Sbjct: 722 EKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGI 781

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 782 CSCGDYW 788



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 183/362 (50%), Gaps = 4/362 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G + HA  I  G+ ++    + +++ Y K      ARKVFD MP+R  V WNT+I  ++ 
Sbjct: 132 GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N   ++++ +F++ML  G + +   T+++VL A A  ++      +   A K  +  +V+
Sbjct: 192 NSYFEDSIRVFVDMLDVGLS-FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V T L+ +Y+KCG       +F+ + + + +++++M++G+  N   E A+ LFR     G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              N  T+  +I        L   + +  +  K G       +++L  +Y +   V  A 
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F    EK++  WN MISG++++  +   + LF++M    L PN  T  S+LSAC+ +G
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  GK +   ++K   +  NV+  + ++D+  + G I EA  L  ++  D     W ++
Sbjct: 430 ALSIGK-WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL-FDLMVDKNVVTWNAM 487

Query: 412 LA 413
           + 
Sbjct: 488 IT 489



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 198/397 (49%), Gaps = 7/397 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
            A++I  G++ D  +   L + +   G ++  R++F+++ +  +  +N +I  ++ NG  
Sbjct: 34  QAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLP 93

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           + ++ L+ ++ +        FT +  + A +   D      LH  ++   +  N+FVG+A
Sbjct: 94  KSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSA 153

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           ++D+Y K      A +VF+ MPER+ V W++M++GF +N  +E+++ +F     +GL ++
Sbjct: 154 IVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFD 213

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+++V+ A A L     G  +  +  K G  S+++  + L+ +Y+KCG       +F 
Sbjct: 214 STTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFD 273

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I++ +++ +N MISG++ +  +   + LF ++  +G   N  T + ++        ++ 
Sbjct: 274 QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQL 333

Query: 356 GKSYFDLMVKQHNVL-PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
            +   +L +K   +L P+V   + +  +  R   +  A  L    P  + AS W ++++ 
Sbjct: 334 SRLIQNLSLKIGIILQPSV--STALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMIS- 389

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
              Y    L + A      M P  + N + +++I +A
Sbjct: 390 --GYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSA 424



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA+  A   GK  H  I    L ++   S  L++ Y+KCG I  AR++FD M
Sbjct: 417 TVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V+WN +I  Y  +G  +EA+ LF  ML+ G  P +  T  S+L AC+    V E 
Sbjct: 477 VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPP-TGVTFLSILYACSHSGLVSEG 535

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
            ++ H  A              ++D+  + G +++A    E MP E     W +++  
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 19/173 (10%)

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             L Q  Q+ A L   G   ++ + + L   +   G V     +F+ + + ++ L+N +I
Sbjct: 25  TTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLI 84

Query: 310 SGFSRHARSVEVMILFEKMQQ-AGLHPNEQTYISVLSACS-----HIGMVEKGKSYFDLM 363
            GFS +      + L+  +++   L P+  TY   +SA S      +G++    S  D  
Sbjct: 85  RGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVD-- 142

Query: 364 VKQHNVLPNVFHYSCMIDI---LGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
                V  N+F  S ++D+     RA L  + +D+   MP   T  +W ++++
Sbjct: 143 ----GVASNLFVGSAIVDLYFKFTRAELARKVFDV---MPERDTV-LWNTMIS 187


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 348/600 (58%), Gaps = 12/600 (2%)

Query: 12  YYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS 71
           Y +S ++    + S    A +  T+ + L +C       RG   H+  I  GL ++   S
Sbjct: 226 YCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS 285

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N LI+ Y++ G +   +KVFD M  R ++SWN+II +Y  N +   A+ LF  M R  + 
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEM-RLSRI 344

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFAL-KAAMDRNVFVGTALLDVYAKCGLISDAS 190
                T+ S+    +   ++  C+ +  F L K     ++ +G A++ +YAK GL+  A 
Sbjct: 345 QPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY--NQFTISSVICACAG 248
            VF  +P ++ ++W+++++G+ QN    EA+ ++   +  G E   NQ T  SV+ AC+ 
Sbjct: 405 AVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQ 464

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
             AL QG ++H  L K G   ++F  +SL DMY KCG + DA  +F  I   N V WNT+
Sbjct: 465 AGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTL 524

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+    H    + ++LF++M   G+ P+  T++++LSACSH G+V++G+  F++M   + 
Sbjct: 525 IACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYG 584

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           + P++ HY CM+D+ GRAG +  A + I +MP    AS+WG+LL++CR + N++L +IA+
Sbjct: 585 ITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIAS 644

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------ 482
           + LF +EP++ G H+LLSN+YA+  +WE V   R +     ++K    S +E+       
Sbjct: 645 EHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVF 704

Query: 483 --GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
             G + HP   E+Y +L  L E++K +GY P+    L DVED  K+ +L+ HSE+LA+ F
Sbjct: 705 YTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAF 764

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            L+       IRI KNLR+CGDCHS  KF S+I  RE IVRD NRFHHF NG CSC D+W
Sbjct: 765 ALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 201/401 (50%), Gaps = 14/401 (3%)

Query: 15  SFSSSAIASASANANAT-ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           S S++A+     N N + E+  +    + C   ++    K  HA+++      +   S  
Sbjct: 35  SASANALQDCWKNGNESKEIDDVHTLFRYCTNLQS---AKCLHARLVVSNAIQNVCISAK 91

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF-INMLREGKTP 132
           L+N Y   G ++ AR  FD +  R + +WN +I  Y   G   E +  F + ML  G  P
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
               T  SVL AC   R+V +  ++H  ALK     +V+V  +L+ +Y + G + +A  +
Sbjct: 152 -DYRTFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARIL 207

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ MP R+  +W++M++G+ Q+   +EAL L    + +    +  T+ S++ AC      
Sbjct: 208 FDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDF 263

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            +G  +H+   K G  S +F ++ L+D+YA+ G + D   VF  +  ++++ WN++I  +
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAY 323

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
             + + +  ++LF++M+ + + P+  T IS+ S  S +G +   +S     +++   L +
Sbjct: 324 ELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLED 383

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +   + ++ +  + GL+  A  +   +P     S W ++++
Sbjct: 384 ITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVIS-WNTIIS 423


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 329/592 (55%), Gaps = 81/592 (13%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA ++  GL    L  + ++ FY+  G I  +  VF+             IG Y  
Sbjct: 89  GHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNG------------IGDY-- 134

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
                                   FT   VL +      V+  K +H   L+  +  +++
Sbjct: 135 ------------------------FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLY 170

Query: 172 VGTALLDVYAKCGLISDASRVF-------------------------------ESMPERN 200
           V T+L+ +Y KCG I+DA +VF                               E MP RN
Sbjct: 171 VATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 230

Query: 201 EVTWSSMVAGFVQNELYEEALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
            V+W++M++G+ Q+ L ++AL LF     +  G+  N  TI SV+ ACA L+ L +G+Q+
Sbjct: 231 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 290

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHA 316
           H + C+ G  SN     +L  MYAKCG +VDA   F  +   EKN++ WNTMI+ ++ + 
Sbjct: 291 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 350

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
             ++ +  F +M QAG+ P++ T+  +LS CSH G+V+ G  YF+ M   +++ P V HY
Sbjct: 351 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 410

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           +C+ D+LGRAG + EA  L+  MP  A  S+WGSLLA+CR +RNLE+AE AA++LF +EP
Sbjct: 411 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEP 470

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHP 488
           +N GN++LLSN+YA   RW+EV + R +++    KK    SW+EI GK         +HP
Sbjct: 471 ENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHP 530

Query: 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG 548
           +  EIY  LE L E+MK  GY P+T + LHD+ +  K+  LI HSEKLA+ FG++     
Sbjct: 531 QGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAE 590

Query: 549 VPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +R+ KNLRICGDCH+ M F S I GRE IVRD+NRFHHF  G CSC D+W
Sbjct: 591 TVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 5/203 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA+     RG+  H     MGLN++      L   Y+KCG +  AR  FD++
Sbjct: 270 TIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 329

Query: 95  --PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV- 151
              ++ +++WNT+I +Y + G   +AV+ F  M++ G  P  + T + +L  C+    V 
Sbjct: 330 NRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQP-DDITFTGLLSGCSHSGLVD 388

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
              K  +  +   +++  V     + D+  + G +++AS++   MP       W S++A 
Sbjct: 389 VGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 448

Query: 211 FVQNELYEEALILFRRAQVLGLE 233
             ++   E A    R+  VL  E
Sbjct: 449 CRKHRNLEMAETAARKLFVLEPE 471


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 325/557 (58%), Gaps = 10/557 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K+ H+  I + L  D   +  L+N Y++ G +  A KVF+E+P +  V W  +I  +   
Sbjct: 133 KLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNF 192

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA-MDRNVF 171
             E     LF  M R G      F V  ++ AC       E K  H   +K   +D N F
Sbjct: 193 SEEFGVFELFSRMRRSG-FELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFF 251

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           + T+L+D+Y KCG +  A ++FE +  R+ V WS+++AGF +N    E++ +FR+     
Sbjct: 252 LQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADS 311

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  N  T +S++ AC+ L +L QG+ VH  + + G   ++   +S +DMYAKCGC+V AY
Sbjct: 312 VTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAY 371

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  I EKNV  W+TMI+GF  H    E + LF +M+     PN  T++SVLSACSH G
Sbjct: 372 RVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSG 431

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +E+G S+F  M + + + P   HY+CM+D+LGRAG I EA   I NMP +  AS WG+L
Sbjct: 432 RIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGAL 491

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L +CR +R  ELAE  AK+L  +E D +G +++LSNIYA    WE V + R  + +  + 
Sbjct: 492 LGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIH 551

Query: 472 KEKSKSWVEIKGK----RNHPRIA----EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           K    + +EI+ K     +  R A    +I S    L E M++LGY P+    LHDV+D 
Sbjct: 552 KIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDE 611

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
            KQE+L  HSEKLA+ FGL+    G+PIRI KN+R+CGDCH+  KF S I  R+ I+RD+
Sbjct: 612 VKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDV 671

Query: 584 NRFHHFTNGSCSCWDFW 600
            RFHH  +G CSC D+W
Sbjct: 672 KRFHHVQDGVCSCGDYW 688



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 190/358 (53%), Gaps = 4/358 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           +A+I+   L+   L   ++   Y + G +  A K F+ +    + SWNTI+ S++ N   
Sbjct: 35  NAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCF 94

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            + + LF  ML+EGK   S F +   + AC         K  H  A+K  ++ + +V  A
Sbjct: 95  YDVLQLFKRMLKEGKLVDS-FNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPA 153

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L++VY + G + +A +VFE +P +N V W  M+ G +          LF R +  G E +
Sbjct: 154 LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELD 213

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSNMFAASSLVDMYAKCGCVVDAYFVF 294
            F +  +I AC  + A  +GK  H +  K  F  SN F  +SLVDMY KCG +  A  +F
Sbjct: 214 PFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLF 273

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             I  ++VV+W+ +I+GF+R+ R++E + +F +M    + PN  T+ S++ ACS +G ++
Sbjct: 274 EEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLK 333

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +G+S    M++ + V  +V +Y+  ID+  + G I  AY +   +P +     W +++
Sbjct: 334 QGRSVHGYMIR-NGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMI 389



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 133/268 (49%), Gaps = 2/268 (0%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           QL+   L  A+ R++  G  +   Y + G +  AS+ F  +   N  +W++++A   +N+
Sbjct: 33  QLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNK 92

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
            + + L LF+R    G   + F +   + AC GL+     K  H++  K     + + A 
Sbjct: 93  CFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAP 152

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +L+++Y + G + +A+ VF  +  KN V+W  MI G    +    V  LF +M+++G   
Sbjct: 153 ALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFEL 212

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           +      ++ AC ++   ++GK++  L +K++ +  N F  + ++D+  + G +  A  L
Sbjct: 213 DPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKL 272

Query: 396 ILNMPFDATASMWGSLLAS-CRNYRNLE 422
              + +     +W +++A   RN R LE
Sbjct: 273 FEEISYRDVV-VWSAIIAGFARNGRALE 299



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 26/245 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + + +C+   +  +G+  H  +I  G+  D       I+ Y+KCG I  A +VF ++
Sbjct: 318 TFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQI 377

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ + SW+T+I  +  +G   EA+ LF  M    + P S  T  SVL AC+    + E 
Sbjct: 378 PEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNS-VTFVSVLSACSHSGRIEEG 436

Query: 155 KQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
                ++   +M R+  +         ++D+  + G I +A     +MP E     W ++
Sbjct: 437 -----WSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGAL 491

Query: 208 VAG---FVQNELYEEALILFRRAQVLGLEYNQ---FTISSVICACAGLAALIQGKQVHAV 261
           +       + EL EE        ++L LE +Q   + + S I A  G+  ++  K+    
Sbjct: 492 LGACRIHRRAELAEEV-----AKKLLPLESDQSGVYVMLSNIYADVGMWEMV--KKTRLK 544

Query: 262 LCKTG 266
           +C+ G
Sbjct: 545 MCEKG 549



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           FG  +F A      Y + G +  A   F+ I  +N+  WNT+++  S++    +V+ LF+
Sbjct: 49  FGPMIFGA------YIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFK 102

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M + G   +    +  + AC  + + +  K +  L +K   +  + +    ++++    
Sbjct: 103 RMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLR-LEGDPYVAPALMNVYTEL 161

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRN----LELAEIAAKQLFGMEP 436
           G + EA+ +   +P   +  +WG ++    N+       EL     +  F ++P
Sbjct: 162 GSLEEAHKVFEEVPLKNSV-IWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDP 214


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/558 (37%), Positives = 336/558 (60%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  ++ +    + +D    N  +N +   GL+  AR++F++M  R +V+WN +I  Y  
Sbjct: 226 GKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQ 285

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    EAV LF  + ++G    ++ T   +L    +   + + K +H    +A  DR+V 
Sbjct: 286 NENFGEAVRLFGRLQQDG-IKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVV 344

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V TAL+ +Y +C     A ++F  M  ++ +TW+ M   + QN   +EAL LF+  Q+ G
Sbjct: 345 VATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEG 404

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
                 T+ +V+  CA LAAL +G+Q+H+ + + GF   M   ++L++MY KCG + +A 
Sbjct: 405 RRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEAR 464

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + ++++++WN+M+  +++H    E + LF +MQ  G   +  +++SVLSA SH G
Sbjct: 465 SVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSG 524

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF-DATASMWGS 410
            V  G  YF  M++  ++ P    Y C++D+LGRAG I EA D++L +        +W +
Sbjct: 525 SVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMT 584

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +CR +   + A+ AA+Q+   +P ++G +++LSN+YAA   W+ V R RKL+R   V
Sbjct: 585 LLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGV 644

Query: 471 KKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           KKE  +S +EI        +G R+HPR   IY++L+ L  EM+  GY P+T+  LHDVED
Sbjct: 645 KKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVED 704

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
            RK+++L +HSE+LA+ FGLM   PG P+R++KNLR+C DCH+  K+ S++ GRE +VRD
Sbjct: 705 ERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRD 764

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFH+F +G CSC D+W
Sbjct: 765 THRFHNFKDGRCSCKDYW 782



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 200/405 (49%), Gaps = 5/405 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L +CA   +   G   H +I+  G   D      LIN Y+KCG + GA   F  +
Sbjct: 108 TYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRL 167

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSW  +I +   + +   A  L+  M  +G  P ++ T+ +V  A      + E 
Sbjct: 168 EHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVP-NKITLYTVFNAYGDPHYLSEG 226

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K ++       M+ +V V  + ++++   GL+ DA R+FE M +R+ VTW+ ++  +VQN
Sbjct: 227 KFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQN 286

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E + EA+ LF R Q  G++ N  T   ++     L +L +GK +H ++ + G+  ++  A
Sbjct: 287 ENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVA 346

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y +C     A+ +F  +  K+V+ W  M   ++++    E + LF++MQ  G  
Sbjct: 347 TALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRR 406

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P   T ++VL  C+H+  ++KG+     +++    +  V   + +I++ G+ G + EA  
Sbjct: 407 PTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVE-TALINMYGKCGKMAEARS 465

Query: 395 LILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPD 437
           +   M       +W S+L +     Y +  L      QL G + D
Sbjct: 466 VFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKAD 509



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 210/403 (52%), Gaps = 3/403 (0%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A LQ C+  +    G+  H  +   G   + L    LI  Y++CG +  A++VF+ + ++
Sbjct: 10  ALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERK 69

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + +W  +IG Y   G    A+ +F  M  E   P ++ T  ++L ACA+   + +  ++
Sbjct: 70  DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMP-TKVTYVAILNACASTESLKDGMEI 128

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   L+   + +VFVGTAL+++Y KCG +  A   F+ +  R+ V+W++M+A  VQ++ +
Sbjct: 129 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQF 188

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
             A  L+RR Q+ G+  N+ T+ +V  A      L +GK +++++      S++   +S 
Sbjct: 189 ALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSA 248

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           ++M+   G + DA  +F  + +++VV WN +I+ + ++    E + LF ++QQ G+  N+
Sbjct: 249 MNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKAND 308

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ +L+  + +  + KGK   +L VK+     +V   + ++ + GR     +A+ + +
Sbjct: 309 ITFVLMLNVYTSLTSLAKGKVIHEL-VKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFV 367

Query: 398 NMPFDATASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPDNA 439
           +M      +     +A  +N +R   L      QL G  P +A
Sbjct: 368 DMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSA 410



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L +CA   A  +G+  H+ II  G   + +    LIN Y KCG ++ AR VF++
Sbjct: 410 ATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEK 469

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R I+ WN+++G+Y  +G   E + LF  M  +G+      +  SVL A +    V +
Sbjct: 470 MAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKA-DAVSFVSVLSALSHSGSVTD 528

Query: 154 CKQLHVFALK 163
             Q  V  L+
Sbjct: 529 GYQYFVAMLQ 538


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 325/542 (59%), Gaps = 33/542 (6%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y+KCG +  AR+VFDEM +R +VSW  +I  Y  +GR  E  +LF +ML +     +EF
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVDCYP--NEF 58

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK------CGLISDAS 190
             +SV+ +C    D    KQ+H  ALK  +  +V+VG AL+  Y+K       G  S+A 
Sbjct: 59  AFASVIISC----DYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEAC 114

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
           RVFESM  RN V+W+SM+A        EEAL+LFR+    GL  +  T S V+ ACAG  
Sbjct: 115 RVFESMEFRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFV 168

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
                  V++ + K GF  +   A++L+  YA+CG +  +  VF  +  ++VV WN+MI 
Sbjct: 169 TERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIK 228

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
            ++ H ++ E + LF +M    + P+  T +++LSACSH G+VE+G + FD M   H V 
Sbjct: 229 AYALHGQAKEALHLFSEMN---VRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVS 285

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P + HY+CM+DILGRAGL+ EA +LI  MP    + +W +LL+SCR Y   +LA++AA +
Sbjct: 286 PQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADK 345

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-------- 482
           L  +EP N+  ++ +SNIY +   + E    R  +  S V+KE   SW+EI+        
Sbjct: 346 LKELEPGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFAS 405

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
           G R HP+   IY+KL  L+ ++K +GY PET   L D+E+  KQE L HHSEKLAL F L
Sbjct: 406 GGRRHPQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFAL 465

Query: 543 MC----LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
           M      C G  IRI+KN+RIC DCH+FMK AS +  +E +VRD NRFHHF N  CSC D
Sbjct: 466 MSEGSLCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCND 525

Query: 599 FW 600
           +W
Sbjct: 526 YW 527



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 151/305 (49%), Gaps = 25/305 (8%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSK------CGLISGARKVFDEMPQRCIVSWN 103
           V GK  HA  + MGL       N LI  YSK       G  S A +VF+ M  R +VSWN
Sbjct: 70  VCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFESMEFRNLVSWN 129

Query: 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA-- 161
           ++I +      E+EA+ LF  + REG  P    T S VL ACA    V E   L V++  
Sbjct: 130 SMIAA------EEEALLLFRQLYREGLAP-DWCTFSIVLKACAGF--VTERHALAVYSQV 180

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
           +KA  + +  +   L+  YA+CG IS + +VF+ M  R+ V+W+SM+  +  +   +EAL
Sbjct: 181 VKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEAL 240

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDM 280
            LF    V     +  T+ +++ AC+    + +G  +   +    G    +   + +VD+
Sbjct: 241 HLFSEMNV---RPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHYACMVDI 297

Query: 281 YAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQ 338
             + G +++A  + S +  K + V+W+ ++S   ++  +    +  +K+++  L P N  
Sbjct: 298 LGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKLKE--LEPGNSL 355

Query: 339 TYISV 343
            Y+ +
Sbjct: 356 GYVQI 360



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 100/184 (54%), Gaps = 10/184 (5%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T    L++CA           +++++  G  +D + +N LI+ Y++CG IS +++
Sbjct: 151 APDWCTFSIVLKACAGFVTERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQ 210

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD+M  R +VSWN++I +Y  +G+ +EA+ LF  M      P S  T+ ++L AC+   
Sbjct: 211 VFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEM---NVRPDSA-TMVALLSACSHAG 266

Query: 150 DVFECKQLHVF---ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWS 205
            V E   +++F   ++   +   +     ++D+  + GL+ +A  +   MP + + V WS
Sbjct: 267 LVEE--GINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWS 324

Query: 206 SMVA 209
           ++++
Sbjct: 325 ALLS 328


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/575 (37%), Positives = 333/575 (57%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL + L +CA       GK  H   +   +++D  T   L++ Y+KCG  + A   F+ M
Sbjct: 432  TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              R IV+WN++I  Y   G    A+ +F  +      P +  T+  V+ ACA   D+ + 
Sbjct: 492  SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAG-TMVGVVPACALLNDLDQG 550

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
              +H   +K   + +  V  AL+D+YAKCG +  A  +F      ++EVTW+ ++A ++Q
Sbjct: 551  TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N   +EA+  F + ++     N  T  SV+ A A LAA  +G   HA + + GF SN   
Sbjct: 611  NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             +SL+DMYAKCG +  +  +F+ ++ K+ V WN M+SG++ H      + LF  MQ++ +
Sbjct: 671  GNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
              +  +++SVLSAC H G+VE+G+  F  M  ++++ P++ HY+CM+D+LGRAGL  E  
Sbjct: 731  QIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
              I  MP +  A +WG+LL SCR + N++L E+A   L  +EP N  + ++LS+IYA + 
Sbjct: 791  GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            RW +  +AR  + D  +KK    SWVE+K        G ++HP++  ++     L+E+M+
Sbjct: 851  RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            K+GY P+    L +VE+  K+  L  HSE+LA+TF L+   PG  I+I+KNLR+C DCH+
Sbjct: 911  KIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHT 970

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              KF S+I  R  IVRD  RFHHF +G CSC D+W
Sbjct: 971  TTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 185/350 (52%), Gaps = 12/350 (3%)

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
            SN LI+ YSKCG +  AR+VFD+M  +  VSW T++  Y  NG   E + LF  M + G
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLG 323

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
               ++ +  S   A A   D+ + K++H  AL+  +D ++ V T L+ +YAKCG    A
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKA 383

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            ++F  +  R+ V WS+++A  VQ    EEAL LF+  Q   ++ N+ T+ S++ ACA L
Sbjct: 384 KQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADL 443

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
           + L  GK +H    K    S++   ++LV MYAKCG    A   F+ +  +++V WN++I
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           +G+++       + +F K++ + ++P+  T + V+ AC+ +  +++G     L+VK    
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG-- 561

Query: 370 LPNVFHYSC-----MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
               F   C     +ID+  + G +  A  L     F      W  ++A+
Sbjct: 562 ----FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 174/331 (52%), Gaps = 3/331 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G   H +I   GL  D      L++ YSK G +  AR+VFD+M
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +V+WN +I   + +    EAV  F +M   G  P S  ++ ++        ++  C
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP-SSVSLLNLFPGICKLSNIELC 249

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H +  +   D +  V   L+D+Y+KCG +  A RVF+ M ++++V+W +M+AG+  N
Sbjct: 250 RSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN 307

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             + E L LF + ++  +  N+ +  S   A A    L +GK++H    +    S++  A
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVA 367

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+ MYAKCG    A  +F G++ +++V W+ +I+   +     E + LF++MQ   + 
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           PN  T +S+L AC+ + +++ GKS     VK
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVK 458



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 176/314 (56%), Gaps = 10/314 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYS---KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           HA+II  G  +    ++ LIN YS   KC L   AR VFD  P    + WN++I +YT +
Sbjct: 52  HAQIIVSGFKHHHSITH-LINLYSLFHKCDL---ARSVFDSTPNPSRILWNSMIRAYTRS 107

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
            +  EA+ ++  M+ +G  P  ++T + VL AC    ++ E    H    +  ++R+VF+
Sbjct: 108 KQYNEALEMYYCMVEKGLEP-DKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFI 166

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           G  L+D+Y+K G +  A  VF+ MP+R+ V W++M+AG  Q+E   EA+  FR  Q++G+
Sbjct: 167 GAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGV 226

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           E +  ++ ++      L+ +   + +H  + +  F S +  ++ L+D+Y+KCG V  A  
Sbjct: 227 EPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARR 284

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  + +++ V W TM++G++ +   VEV+ LF+KM+   +  N+ + +S   A +    
Sbjct: 285 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETID 344

Query: 353 VEKGKSYFDLMVKQ 366
           +EKGK      ++Q
Sbjct: 345 LEKGKEIHGCALQQ 358



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 6/318 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T+   + +CA      +G   H  I+ +G  +D    N LI+ Y+KCG +  A  +F
Sbjct: 530 DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 92  DEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           ++    +  V+WN II +Y  NG  +EA++ F  M  E   P S  T  SVL A A    
Sbjct: 590 NKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNS-VTFVSVLPAAAYLAA 648

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
             E    H   ++     N  VG +L+D+YAKCG +  + ++F  M  ++ V+W++M++G
Sbjct: 649 FREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSG 708

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGS 269
           +  +   + A+ LF   Q   ++ +  +  SV+ AC     + +G+++ H++  K     
Sbjct: 709 YAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKP 768

Query: 270 NMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           ++   + +VD+  + G   +   F+     E +  +W  ++     H+      +  + +
Sbjct: 769 DLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHL 828

Query: 329 QQAGLHPNEQTYISVLSA 346
            +  L P    +  VLS+
Sbjct: 829 VK--LEPRNPAHFVVLSS 844



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 14/245 (5%)

Query: 174 TALLDVYA---KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           T L+++Y+   KC L   A  VF+S P  + + W+SM+  + +++ Y EAL ++      
Sbjct: 67  THLINLYSLFHKCDL---ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK 123

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GLE +++T + V+ AC G   L +G   H  + + G   ++F  + LVDMY+K G +  A
Sbjct: 124 GLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRA 183

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  + +++VV WN MI+G S+     E +  F  MQ  G+ P+  + +++      +
Sbjct: 184 REVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL 243

Query: 351 GMVEKGKSYFDLMVKQH--NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             +E  +S    + ++   + + N      +ID+  + G +  A  +   M  D     W
Sbjct: 244 SNIELCRSIHGYVFRRDFSSAVSN-----GLIDLYSKCGDVDVARRVFDQM-VDQDDVSW 297

Query: 409 GSLLA 413
           G+++A
Sbjct: 298 GTMMA 302


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/546 (38%), Positives = 327/546 (59%), Gaps = 9/546 (1%)

Query: 63   GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
            G+  + + +N L+ FYS    +  A  +FD M  R  VSW+ ++G +   G        F
Sbjct: 765  GMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF 824

Query: 123  INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
              ++R G  P   +T+  V+ AC   +++   + +H    K  +D + FV  AL+D+Y K
Sbjct: 825  RELIRCGARP-DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGK 883

Query: 183  CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
            C  I DA  +F+ M ER+ VTW+ M+ G+ +     E+L+LF + +  G+  ++  + +V
Sbjct: 884  CREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTV 943

Query: 243  ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
            + ACA L A+ + + +   + +  F  ++   ++++DM+AKCGCV  A  +F  +EEKNV
Sbjct: 944  VFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNV 1003

Query: 303  VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
            + W+ MI+ +  H +  + + LF  M ++G+ PN+ T +S+L ACSH G+VE+G  +F  
Sbjct: 1004 ISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSX 1063

Query: 363  MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
            M + ++V  +V HY+C++D+LGRAG + EA  LI +M  +    +WG+ L +CR ++++ 
Sbjct: 1064 MWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVX 1123

Query: 423  LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
            LAE AA  L  ++P N G+++LLSNIYA   RWE+VA+ R L+    +KK    +W+E+ 
Sbjct: 1124 LAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVD 1183

Query: 483  --------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
                    G   HPR  EIY  L+ L  +++ +GY P+T   LHDV++  K  +L  HSE
Sbjct: 1184 NKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSE 1243

Query: 535  KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
            KLA+ FGL+      PIRI+KNLR+CGDCH+F K  S I GR  IVRD NRFHHF  G+C
Sbjct: 1244 KLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGAC 1303

Query: 595  SCWDFW 600
            SC D+W
Sbjct: 1304 SCGDYW 1309



 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/511 (35%), Positives = 296/511 (57%), Gaps = 9/511 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+    G+  + + +N LI FYS    +  A  +FD M  R  VSW+ ++G +   G  
Sbjct: 82  HAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY 141

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
                 F  ++R G  P   +T+  V+ AC   +++   + +H    K  +D + FV  A
Sbjct: 142 INCFGTFRELIRCGARP-DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAA 200

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D+Y KC  I DA  +F+ M ER+ VTW+ M+ G+ +     E+L+LF + +  G+  +
Sbjct: 201 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 260

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           +  + +V+ ACA L A+ + + +   + +  F  ++   ++++DMYAKCGCV  A  +F 
Sbjct: 261 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 320

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +EEKNV+ W+ MI+ +  H +  + + LF  M  +G+ P++ T  S+L ACSH G+VE+
Sbjct: 321 RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEE 380

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G  +F  M + ++V  +V HY+C++D+LGRAG + EA  LI +M  +    +WG+ L +C
Sbjct: 381 GLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGAC 440

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R ++++ LAE AA  L  ++  N G+++LLSNIYA   RWE+VA+ R L+    +KK   
Sbjct: 441 RTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPG 500

Query: 476 KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            +W+E+         G   HPR  EIY  L+ L  +++ +GY P+T   LHDV++  K  
Sbjct: 501 WTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIG 560

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           +L  HSEKLA+ FGL+      PIRI+KNLR
Sbjct: 561 ILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 141/266 (53%), Gaps = 2/266 (0%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           R++ + +Q+H  A    M  N+ V   L+  Y+    + DA  +F+ M  R+ V+WS MV
Sbjct: 73  RNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 132

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            GF +   Y      FR     G   + +T+  VI AC  L  L  G+ +H ++ K G  
Sbjct: 133 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 192

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            + F  ++LVDMY KC  + DA F+F  ++E+++V W  MI G++   ++ E ++LFEKM
Sbjct: 193 LDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 252

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           ++ G+ P++   ++V+ AC+ +G + K +   D  +++     +V   + MID+  + G 
Sbjct: 253 REEGVVPDKVAMVTVVFACAKLGAMHKAR-IIDDYIQRKKFQLDVILGTAMIDMYAKCGC 311

Query: 389 IHEAYDLILNMPFDATASMWGSLLAS 414
           +  A ++   M      S W +++A+
Sbjct: 312 VESAREIFDRMEEKNVIS-WSAMIAA 336



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 139/262 (53%), Gaps = 2/262 (0%)

Query: 153  ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
            + +Q+H  A    M +N+ V   L+  Y+    + DA  +F+ M  R+ V+WS MV GF 
Sbjct: 753  QVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA 812

Query: 213  QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            +   Y      FR     G   + +T+  VI AC  L  L  G+ +H ++ K G   + F
Sbjct: 813  KVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHF 872

Query: 273  AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              ++LVDMY KC  + DA F+F  + E+++V W  MI G++    + E ++LF+KM++ G
Sbjct: 873  VCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 932

Query: 333  LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            + P++   ++V+ AC+ +G + K ++  D + ++   L +V   + MID+  + G +  A
Sbjct: 933  VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL-DVILGTAMIDMHAKCGCVESA 991

Query: 393  YDLILNMPFDATASMWGSLLAS 414
             ++   M      S W +++A+
Sbjct: 992  REIFDRMEEKNVIS-WSAMIAA 1012



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 165/356 (46%), Gaps = 42/356 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   +++C   +    G++ H  +   GL+ D      L++ Y KC  I  AR +FD+M
Sbjct: 162 TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM 221

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +V+W  +IG Y   G+  E++ LF  M  EG  P  +  + +V+ ACA    + + 
Sbjct: 222 QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP-DKVAMVTVVFACAKLGAMHKA 280

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +  +     +V +GTA++D+YAKCG +  A  +F+ M E+N ++WS+M+A +  +
Sbjct: 281 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 340

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGSNMF 272
               +AL LF      G+  ++ T++S++ AC+           HA L + G  F S+M+
Sbjct: 341 GQGRKALDLFPMMLSSGMLPDKITLASLLYACS-----------HAGLVEEGLRFFSSMW 389

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              S+        CVVD                        R  R  E + L + M    
Sbjct: 390 EDYSVRTDVKHYTCVVDL---------------------LGRAGRLDEALKLIKSMT--- 425

Query: 333 LHPNEQTYISVLSAC-SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           +  +E  + + L AC +H  +V   K+   L+  Q     N  HY  + +I   AG
Sbjct: 426 IEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQ---NPGHYVLLSNIYANAG 478



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 143/283 (50%), Gaps = 3/283 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL   +++C   +    G++ H  +   GL+ D      L++ Y KC  I  AR +FD+M
Sbjct: 838  TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKM 897

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             +R +V+W  +IG Y   G   E++ LF  M  EG  P  +  + +V+ ACA    + + 
Sbjct: 898  XERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP-DKVAMVTVVFACAKLGAMHKA 956

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            + +  +  +     +V +GTA++D++AKCG +  A  +F+ M E+N ++WS+M+A +  +
Sbjct: 957  RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 1016

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
                +AL LF      G+  N+ T+ S++ AC+    + +G +  + + +      ++  
Sbjct: 1017 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKH 1076

Query: 274  ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
             + +VD+  + G + +A   + S   EK+  LW   +     H
Sbjct: 1077 YTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTH 1119



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%)

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           I A      L Q +QVHA     G   N+  A+ L+  Y+    + DAY +F G+  ++ 
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           V W+ M+ GF++    +     F ++ + G  P+  T   V+ AC  +  ++ G+
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGR 180


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 346/575 (60%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            TL + L++C+     +   +  H   +  G   D+  +  LI+ YSK G +  A  +F  
Sbjct: 1007 TLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQN 1066

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                 +  WN ++  Y      ++A+ LF  + + G+    + T+++   AC     + +
Sbjct: 1067 KDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKS-DQITLATAAKACGCLVLLDQ 1125

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             KQ+H  A+KA  D ++ V + +LD+Y KCG + +A  VF  +   ++V W+SM++G V 
Sbjct: 1126 GKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVD 1185

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N   ++AL ++ R +   +  +++T +++I A + + AL QG+Q+HA + K    S+ F 
Sbjct: 1186 NGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFV 1245

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             +SLVDMYAKCG + DAY +F  +  +N+ LWN M+ G ++H  + E + LF+ M+  G+
Sbjct: 1246 GTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGI 1305

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P+  ++I +LSACSH G+  +   Y   M   + + P + HYSC++D LGRAGL+ EA 
Sbjct: 1306 EPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEAD 1365

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             +I  MPF A+AS+  +LL +CR   ++E  +  A +LF +EP ++  ++LLSNIYAA  
Sbjct: 1366 KVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAAN 1425

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMK 505
            RW++V  ARK+++   VKK+   SW+++K          R+HP+   IY K+E++++ ++
Sbjct: 1426 RWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIR 1485

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            + GY P+TE  L DVED  K+  L +HSEKLA+ +GL+       IR++KNLR+CGDCH+
Sbjct: 1486 EDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHN 1545

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +K+ S++  RE ++RD NRFHHF +G CSC D+W
Sbjct: 1546 AIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 194/443 (43%), Gaps = 85/443 (19%)

Query: 52   GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY-- 109
            GK  HA+I+  G   D   SN L+  YSKCG +S AR+VFD  P+R +V+WN I+G+Y  
Sbjct: 640  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 110  ---TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
               + +G  QE + LF  +LR      +  T++ VL  C     ++  + +H +A+K  +
Sbjct: 700  SVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758

Query: 167  D-------------------------------RNVFVGTALLDVYAKCGLISDASRVFES 195
            +                               R+V +   +L  Y + GL  +A ++F  
Sbjct: 759  EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 818

Query: 196  M------PER----------NEVTWSSMVAGFVQNELYEEALIL---------------- 223
                   P+           +EV W        Q + Y   L L                
Sbjct: 819  FHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSE 878

Query: 224  -------------FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
                         F     L ++Y+  T+  V+ A AG   L  GKQVH +  K+G  S+
Sbjct: 879  CLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSD 938

Query: 271  MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            +  A+SLV+MY+K GC   A  VF+ ++  +++ WN+MIS  ++ +   E + LF  +  
Sbjct: 939  VSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLH 998

Query: 331  AGLHPNEQTYISVLSACSH-IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             GL P+  T  SVL ACS  I  +   +      +K  N+  + F  + +ID+  ++G +
Sbjct: 999  EGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNI-ADSFVATTLIDVYSKSGKM 1057

Query: 390  HEAYDLILNMPFDATASMWGSLL 412
             EA  L  N   D   + W +++
Sbjct: 1058 EEAEFLFQNKD-DLDLACWNAMM 1079


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 330/574 (57%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        GK  H +    G  ++    N L++ Y+K G IS AR VFD++
Sbjct: 87  TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 146

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSW +II  Y  NG   EA+ +F  M R+         + SV+ A     D+ + 
Sbjct: 147 HDRTVVSWTSIISGYVQNGDPMEALNVFKEM-RQCNVKPDWIALVSVMTAYTNVEDLGQG 205

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H    K  ++    +  +L  +YAK GL+  A   F  M + N + W++M++G+  N
Sbjct: 206 KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANN 265

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA+ LFR      +  +  T+ S + A A + +L   + +   + K+ +  + F  
Sbjct: 266 GYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVN 325

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+DMYAKCG +  A  VF  + +K+VVLW+ MI G+  H    E + L+ +M+QAG+ 
Sbjct: 326 TGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVC 385

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I +L+AC + G+V++G   F LM   H + P+  HYSC++D+LGRAG +++AYD
Sbjct: 386 PNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYD 444

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I++MP     S+WG+LL++C+ +R + L EIAA+QLF ++P N G+++ LSN+YA+   
Sbjct: 445 FIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHL 504

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W  VA  R ++    + K+   S +EI G         R+HP+  EI+ +L++L + +K 
Sbjct: 505 WTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKA 564

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P  E  LHD+     +E L HHSE+LA+ +G++   PG  +RI KNLR C +CHS 
Sbjct: 565 AGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSA 624

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S++  RE I+RD  RFHHF +G CSC DFW
Sbjct: 625 IKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 171/343 (49%), Gaps = 6/343 (1%)

Query: 73  ILINFYSKC---GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
           ++I F + C   G ++ A K F E+ +  I+ WN II  YT        + ++++M    
Sbjct: 21  LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 80

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
             P + FT   VL AC         KQ+H    K     NVFV  +L+ +YAK G IS A
Sbjct: 81  VHP-NCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 139

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
             VF+ + +R  V+W+S+++G+VQN    EAL +F+  +   ++ +   + SV+ A   +
Sbjct: 140 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 199

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             L QGK +H ++ K G         SL  MYAK G V  A F F+ +E+ N++LWN MI
Sbjct: 200 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 259

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           SG++ +    E + LF +M    +  +  T  S + A + +G +E  + + D  + +   
Sbjct: 260 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR-WLDGYISKSEY 318

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             + F  + +ID+  + G I+ A   + +   D    +W  ++
Sbjct: 319 RDDTFVNTGLIDMYAKCGSIYLA-RCVFDRVADKDVVLWSVMI 360



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 117/210 (55%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q++V  + + + +  F+    ++     G ++ A + F  + E + + W++++ G+ Q  
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           + +  + ++   Q+  +  N FT   V+ AC G +    GKQ+H    K GFGSN+F  +
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 124

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           SLV MYAK G +  A  VF  + ++ VV W ++ISG+ ++   +E + +F++M+Q  + P
Sbjct: 125 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKP 184

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +    +SV++A +++  + +GKS   L+ K
Sbjct: 185 DWIALVSVMTAYTNVEDLGQGKSIHGLVTK 214


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/621 (37%), Positives = 343/621 (55%), Gaps = 78/621 (12%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCG----LISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           HA  +  G    T  SN L++ YSKC     L+  ARKVFDE+ ++   SW T++  Y  
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 112 NGR--------------------------------EQEAVALFINMLREGKTPYSEFTVS 139
           NG                                  QEA+ +   M+  G     EFT  
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSG-IELDEFTYP 290

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           SV+ ACA    +   KQ+H + L+   D +     +L+ +Y KCG   +A  +FE MP +
Sbjct: 291 SVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK 349

Query: 200 NEVTWSSMVAGFV-------------------------------QNELYEEALILFRRAQ 228
           + V+W+++++G+V                               +N   EE L LF   +
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G E   +  S  I +CA L A   G+Q HA L K GF S++ A ++L+ MYAKCG V 
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVE 469

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A  VF  +   + V WN +I+   +H    E + ++E+M + G+ P+  T ++VL+ACS
Sbjct: 470 EARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACS 529

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           H G+V++G+ YFD M   + + P   HY+ +ID+L R+G   +A  +I ++PF  TA +W
Sbjct: 530 HAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIW 589

Query: 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
            +LL+ CR + N+EL  IAA +LFG+ P++ G ++LLSN++AA  +WEEVAR RKL+RD 
Sbjct: 590 EALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDR 649

Query: 469 EVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            VKKE + SW+E++ +         +HP    +Y  L+ L +EM++LGY P+T   LHDV
Sbjct: 650 GVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDV 709

Query: 521 E-DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           E D  K+++L  HSEK+A+ FGLM L PG  IRI KNLR CGDCH+F +F S +  R+ I
Sbjct: 710 ESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDII 769

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           +RD  RFHHF NG CSC +FW
Sbjct: 770 LRDRKRFHHFRNGECSCGNFW 790



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 197/443 (44%), Gaps = 76/443 (17%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           D +    +++ Y   G I+ AR VF++ P   R  V +N +I  ++ N     A+ LF  
Sbjct: 79  DKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 125 MLREGKTPYSEFTVSSVLCACA-AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M  EG  P   FT +SVL   A    D  +C Q H  ALK+       V  AL+ VY+KC
Sbjct: 139 MKHEGFKP-DNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKC 197

Query: 184 G----LISDASRVFESMPERNEVTWSSMVAGFVQN------------------------- 214
                L+  A +VF+ + E++E +W++M+ G+V+N                         
Sbjct: 198 ASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAM 257

Query: 215 -------ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
                    Y+EAL + RR    G+E ++FT  SVI ACA    L  GKQVHA + +   
Sbjct: 258 ISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRED 317

Query: 268 GSNMFAASSLVDMYAKC-------------------------------GCVVDAYFVFSG 296
            S  F  +SLV +Y KC                               G + +A  +F  
Sbjct: 318 FSFHF-DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           ++EKN++ W  MISG + +    E + LF  M++ G  P +  +   + +C+ +G    G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
           + Y   ++K      ++   + +I +  + G++ EA  +   MP   + S W +L+A+  
Sbjct: 437 QQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS-WNALIAALG 494

Query: 417 NY-RNLELAEIAAKQL-FGMEPD 437
            +    E  ++  + L  G+ PD
Sbjct: 495 QHGHGAEAVDVYEEMLKKGIRPD 517



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 47/349 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT---SNILINFYSKCGLISGARKVF 91
           T  + +++CA       GK  HA +    L  +  +    N L++ Y KCG    AR +F
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYV----LRREDFSFHFDNSLVSLYYKCGKFDEARAIF 343

Query: 92  DEMPQRCIVSWNTIIGSYTT-------------------------------NGREQEAVA 120
           ++MP + +VSWN ++  Y +                               NG  +E + 
Sbjct: 344 EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 403

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           LF  M REG  P  ++  S  + +CA        +Q H   LK   D ++  G AL+ +Y
Sbjct: 404 LFSCMKREGFEP-CDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMY 462

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           AKCG++ +A +VF +MP  + V+W++++A   Q+    EA+ ++      G+  ++ T+ 
Sbjct: 463 AKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLL 522

Query: 241 SVICACAGLAALIQGKQVH---AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           +V+ AC+    + QG++       + +   G++ +A   L+D+  + G   DA  V   +
Sbjct: 523 TVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYA--RLIDLLCRSGKFSDAESVIESL 580

Query: 298 EEKNVV-LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
             K    +W  ++SG   H      +I  +K+   GL P       +LS
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKL--FGLIPEHDGTYMLLS 627



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 140/330 (42%), Gaps = 81/330 (24%)

Query: 176 LLDVYAK-------------------------------CGLISDASRVFESMP--ERNEV 202
           L+DVY K                                G I+ A  VFE  P   R+ V
Sbjct: 55  LIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTV 114

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI----QGKQV 258
            +++M+ GF  N     A+ LF + +  G + + FT +SV+   AGLA +     Q  Q 
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL---AGLALVADDEKQCVQF 171

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKC------------------------------GCVV 288
           HA   K+G G     +++LV +Y+KC                              G V 
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 289 DAYF-----VFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           + YF     +  G+++   +V +N MISG+       E + +  +M  +G+  +E TY S
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLILNMPF 401
           V+ AC+  G+++ GK     ++++ +     FH+ + ++ +  + G   EA  +   MP 
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRREDF---SFHFDNSLVSLYYKCGKFDEARAIFEKMPA 348

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQL 431
               S W +LL+   +  ++  A++  K++
Sbjct: 349 KDLVS-WNALLSGYVSSGHIGEAKLIFKEM 377


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 330/574 (57%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        GK  H +    G  ++    N L++ Y+K G IS AR VFD++
Sbjct: 102 TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 161

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSW +II  Y  NG   EA+ +F  M R+         + SV+ A     D+ + 
Sbjct: 162 HDRTVVSWTSIISGYVQNGDPMEALNVFKEM-RQCNVKPDWIALVSVMTAYTNVEDLGQG 220

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H    K  ++    +  +L  +YAK GL+  A   F  M + N + W++M++G+  N
Sbjct: 221 KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANN 280

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA+ LFR      +  +  T+ S + A A + +L   + +   + K+ +  + F  
Sbjct: 281 GYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVN 340

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+DMYAKCG +  A  VF  + +K+VVLW+ MI G+  H    E + L+ +M+QAG+ 
Sbjct: 341 TGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVC 400

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I +L+AC + G+V++G   F LM   H + P+  HYSC++D+LGRAG +++AYD
Sbjct: 401 PNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYD 459

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I++MP     S+WG+LL++C+ +R + L EIAA+QLF ++P N G+++ LSN+YA+   
Sbjct: 460 FIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHL 519

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W  VA  R ++    + K+   S +EI G         R+HP+  EI+ +L++L + +K 
Sbjct: 520 WTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKA 579

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P  E  LHD+     +E L HHSE+LA+ +G++   PG  +RI KNLR C +CHS 
Sbjct: 580 AGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSA 639

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S++  RE I+RD  RFHHF +G CSC DFW
Sbjct: 640 IKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 171/343 (49%), Gaps = 6/343 (1%)

Query: 73  ILINFYSKC---GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
           ++I F + C   G ++ A K F E+ +  I+ WN II  YT        + ++++M    
Sbjct: 36  LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 95

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
             P + FT   VL AC         KQ+H    K     NVFV  +L+ +YAK G IS A
Sbjct: 96  VHP-NCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 154

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
             VF+ + +R  V+W+S+++G+VQN    EAL +F+  +   ++ +   + SV+ A   +
Sbjct: 155 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 214

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             L QGK +H ++ K G         SL  MYAK G V  A F F+ +E+ N++LWN MI
Sbjct: 215 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 274

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           SG++ +    E + LF +M    +  +  T  S + A + +G +E  + + D  + +   
Sbjct: 275 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR-WLDGYISKSEY 333

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             + F  + +ID+  + G I+ A   + +   D    +W  ++
Sbjct: 334 RDDTFVNTGLIDMYAKCGSIYLA-RCVFDRVADKDVVLWSVMI 375



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 117/210 (55%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q++V  + + + +  F+    ++     G ++ A + F  + E + + W++++ G+ Q  
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           + +  + ++   Q+  +  N FT   V+ AC G +    GKQ+H    K GFGSN+F  +
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 139

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           SLV MYAK G +  A  VF  + ++ VV W ++ISG+ ++   +E + +F++M+Q  + P
Sbjct: 140 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKP 199

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +    +SV++A +++  + +GKS   L+ K
Sbjct: 200 DWIALVSVMTAYTNVEDLGQGKSIHGLVTK 229


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 342/585 (58%), Gaps = 13/585 (2%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           +SA  ++T   T    L +CAR       +    +    G   D    + L++ YS+CG 
Sbjct: 105 SSARPDST---TFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGA 161

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  A +VFD MP++  V+W+T++  + + GR  EA+ ++  M RE      E  +  V+ 
Sbjct: 162 MGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRM-REHGVAEDEVVMVGVIQ 220

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           AC    +      +H   L+  M  +V + T+L+D+YAK G    A +VF  MP RN V+
Sbjct: 221 ACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVS 280

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+++++GF QN   +EAL LFR     GL+ +   + S + ACA +  L  GK +H  + 
Sbjct: 281 WNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFIL 340

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +          ++++DMY+KCG +  A  +F+ +  +++VLWN MI+    H    + + 
Sbjct: 341 RR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALA 399

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF+++ + G+ P+  T+ S+LSA SH G+VE+GK +FD M+ +  + P   H  C++D+L
Sbjct: 400 LFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLL 459

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R+GL+ EA +++ +M  + T  +W +LL+ C N + LEL E  AK++   +P++ G   
Sbjct: 460 ARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLA 519

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------NHPRIAEIYS 495
           L+SN+YAA ++W++V   RKL++DS  KK    S +E+ G R        +HP+  EI  
Sbjct: 520 LVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILK 579

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
            + KL  EM+K+GY P TE   HD+++  K++LL +HSE+LA+ FGL+   PG  + I+K
Sbjct: 580 MISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIK 639

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+CGDCH  +K+ S+I  RE +VRD  RFHHF +G+CSC D+W
Sbjct: 640 NLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 190/380 (50%), Gaps = 19/380 (5%)

Query: 78  YSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           Y++ G +  A       P  + CI +WN ++ + +  G    A+ +F  +    +   + 
Sbjct: 54  YARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSARPDSTT 113

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT++  L ACA   D+   + + V A  A   R+VFV +ALL VY++CG + DA RVF+ 
Sbjct: 114 FTLA--LTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDG 171

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MP ++ V WS+MVAGFV      EAL ++ R +  G+  ++  +  VI AC        G
Sbjct: 172 MPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMG 231

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
             VH    + G   ++  A+SLVDMYAK G    A  VF  +  +N V WN +ISGF+++
Sbjct: 232 ASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQN 291

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
             + E + LF +M  +GL P+    +S L AC+ +G ++ GKS    ++++         
Sbjct: 292 GHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-------LE 344

Query: 376 YSCM-----IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY--RNLELAEIAA 428
           + C+     +D+  + G +  A  L  N        +W +++A C  +   +  LA    
Sbjct: 345 FQCILGTAVLDMYSKCGSLESARKL-FNKLSSRDLVLWNAMIACCGTHGCGHDALALFQE 403

Query: 429 KQLFGMEPDNAGNHLLLSNI 448
               G++PD+A    LLS +
Sbjct: 404 LNETGIKPDHATFASLLSAL 423


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/598 (36%), Positives = 340/598 (56%), Gaps = 33/598 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKII-GMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  + L +C++      G+  HA ++    L  ++  ++ L++ Y+    +  AR+VFD 
Sbjct: 273 TFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDM 332

Query: 94  MP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           +P   R +  WN ++  Y   G ++EA+ LF  M  E     SE T++ VL ACA + + 
Sbjct: 333 VPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACA-RSET 391

Query: 152 FECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           F  K+ +H + LK  M  N FV  AL+D+YA+ G +  A  +F ++  R+ V+W++++ G
Sbjct: 392 FAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITG 451

Query: 211 FVQNELYEEALILFRRAQVLG------------------LEYNQFTISSVICACAGLAAL 252
            V      +A  L R  Q  G                  +  N  T+ +++  CA LAA 
Sbjct: 452 CVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAP 511

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            +GK++H    +    S++   S+LVDMYAKCGC+  +  VF  + ++NV+ WN +I  +
Sbjct: 512 AKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAY 571

Query: 313 SRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
             H    E + LF++M  +    PNE T+I+ L+ACSH GMV++G   F  M + H V P
Sbjct: 572 GMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQP 631

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
               ++C +DILGRAG + EAY +I +M P +   S W S L +CR +RN+ L EIAA++
Sbjct: 632 TPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAER 691

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG------- 483
           LF +EPD A +++LL NIY+A   WE+ +  R  +R   V KE   SW+E+ G       
Sbjct: 692 LFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMA 751

Query: 484 -KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
            +  HP    +++ ++ L E M+  GY P+T   LHD+E+S K  +L +HSEKLA+ FGL
Sbjct: 752 GESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGL 811

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +   PG  IR+ KNLR+C DCH   KF SR+ GRE ++RD+ RFHHF +G+CSC D+W
Sbjct: 812 LRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 197/396 (49%), Gaps = 23/396 (5%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTL------TSNILINFYSKCGLISGARKVFD 92
            L   A+  A +R  +    I G  L  D L       +N L+  Y++CG ++ A  +F+
Sbjct: 61  ALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFN 120

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-AKRDV 151
            MP R  V++N++I +     R   A+    +ML EG  P S FT+ SVL AC+    D+
Sbjct: 121 AMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGH-PLSSFTLVSVLLACSHLAEDL 179

Query: 152 FECKQLHVFALKAA-MDRNV-FVGTALLDVYAKCGLISDASRVFESM-----PERNEVTW 204
              ++ H FALK   +D +  F   ALL +YA+ GL+ DA  +F S+     P    VTW
Sbjct: 180 RLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTW 239

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA-VLC 263
           ++MV+  VQ+    EA+ +       G+  +  T +S + AC+ L  L  G+++HA VL 
Sbjct: 240 NTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK 299

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEV 321
            +   +N F AS+LVDMYA    V  A  VF  +    + + LWN M+ G+++     E 
Sbjct: 300 DSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEA 359

Query: 322 MILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
           + LF +M+ +AG+ P+E T   VL AC+       GK      V +  +  N F  + ++
Sbjct: 360 LELFARMEAEAGVVPSETTIAGVLPACAR-SETFAGKEAVHGYVLKRGMADNPFVQNALM 418

Query: 381 DILGRAGLIHEAYDLILNM-PFDATASMWGSLLASC 415
           D+  R G +  A  +   + P D  +  W +L+  C
Sbjct: 419 DLYARLGDMEAARWIFAAIEPRDVVS--WNTLITGC 452



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 177/346 (51%), Gaps = 28/346 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+   L +CAR       +  H  ++  G+ ++    N L++ Y++ G +  AR +F  
Sbjct: 377 TTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAA 436

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK---------------TPY--SEF 136
           +  R +VSWNT+I      G   +A  L   M ++G+                P   +  
Sbjct: 437 IEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNV 496

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T+ ++L  CA      + K++H +A++ A+D ++ VG+AL+D+YAKCG ++ +  VF+ +
Sbjct: 497 TLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRL 556

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY--NQFTISSVICACAGLAALIQ 254
           P+RN +TW+ ++  +  + L +EA+ LF R  V+  E   N+ T  + + AC+    + +
Sbjct: 557 PKRNVITWNVLIMAYGMHGLGDEAIALFDR-MVMSNEAKPNEVTFIAALAACSHSGMVDR 615

Query: 255 GKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISG 311
           G ++ H++    G        +  VD+  + G + +AY + + +E  E+ V  W++ + G
Sbjct: 616 GMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFL-G 674

Query: 312 FSRHARSVEV-MILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEK 355
             R  R+V +  I  E++ Q  L P+E + Y+ + +  S  G+ EK
Sbjct: 675 ACRLHRNVPLGEIAAERLFQ--LEPDEASHYVLLCNIYSAAGLWEK 718



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 21/282 (7%)

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF------VGTALLDVYAKCGL 185
           P   F +     + AA R +   + +H     AA+ R++       V  ALL  YA+CG 
Sbjct: 56  PLDHFALPPAAKSAAALRSLIAVRSIH----GAALRRDLLHGFTPAVANALLTAYARCGD 111

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           ++ A  +F +MP R+ VT++S++A       +  AL   R   + G   + FT+ SV+ A
Sbjct: 112 LTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLA 171

Query: 246 CAGLAALIQ-GKQVHAVLCKTGF--GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN- 301
           C+ LA  ++ G++ HA   K GF  G   FA ++L+ MYA+ G V DA  +F  ++  + 
Sbjct: 172 CSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDS 231

Query: 302 ----VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
               VV WNTM+S   +  R  E + +   M   G+ P+  T+ S L ACS + M+  G+
Sbjct: 232 PGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGR 291

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILG---RAGLIHEAYDLI 396
                ++K  ++  N F  S ++D+     R G+    +D++
Sbjct: 292 EMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMV 333


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 353/603 (58%), Gaps = 42/603 (6%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ CAR R     K  HA I+ +G+      +N L+N Y KCG  S A +VFDEMP R  
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           ++W +++ +        + +++F ++         +F  S+++ ACA    +   +Q+H 
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             + +    +  V ++L+D+YAKCGL++ A  VF+S+  +N ++W++MV+G+ ++   EE
Sbjct: 130 HFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEE 189

Query: 220 ALILFRRAQVL-----------------GLE-YNQFT--------------ISSVICACA 247
           AL LFR   V                  GLE ++ FT              +SS++ ACA
Sbjct: 190 ALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACA 249

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            LAA I G+QVH ++   GF S +F +++L+DMYAKC  V+ A  +FS +  ++VV W +
Sbjct: 250 NLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTS 309

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           +I G ++H ++ + + L++ M   G+ PNE T++ ++ ACSH+G VEKG+  F  M K +
Sbjct: 310 LIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDY 369

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC-RNYRNLELAEI 426
            + P++ HY+C++D+LGR+GL+ EA +LI  MPF      W +LL++C R  R      I
Sbjct: 370 GIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRI 429

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           A   +   +  +   ++LLSNIYA+   W +V+ AR+ + + EV+K+   S VE++    
Sbjct: 430 ADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETE 489

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
               G+ +HP   +I+  L+KL EEM+ + GY P+T   LHD+++  K++LL  HSE+ A
Sbjct: 490 VFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSA 549

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + +GL+   PG PIRI+KNLR+CGDCH  +K  S I  RE IVRD  R+HHF  G CSC 
Sbjct: 550 VAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCN 609

Query: 598 DFW 600
           DFW
Sbjct: 610 DFW 612



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 97/183 (53%), Gaps = 13/183 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + + +CA   A + G+  H  +I +G ++    SN LI+ Y+KC  +  A+ +F  M
Sbjct: 240 VLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRM 299

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA------AK 148
             R +VSW ++I     +G+ ++A+AL+ +M+  G  P +E T   ++ AC+        
Sbjct: 300 RHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKP-NEVTFVGLIYACSHVGFVEKG 358

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
           R++F+      + ++ ++       T LLD+  + GL+ +A  +  +MP   +E TW+++
Sbjct: 359 RELFQ-SMTKDYGIRPSLQHY----TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAAL 413

Query: 208 VAG 210
           ++ 
Sbjct: 414 LSA 416


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/574 (37%), Positives = 336/574 (58%), Gaps = 47/574 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+   A   G   H+     GL +D      L++FY+KCG++  A+++F  M
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+WN +I   +  G   +AV L + M  EG  P S  T+  VL  C         
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS-TIVGVLPTC--------- 220

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                                      +C L   A ++F+ M  RNEV+WS+M+ G+V +
Sbjct: 221 ---------------------------QCLLY--ARKIFDVMGVRNEVSWSAMIGGYVAS 251

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  +EAL +FR  Q+ G++ +  T+  V+ AC+ LAAL  G   H  L   GF ++    
Sbjct: 252 DCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC 311

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMY+KCG +  A  VF+ ++  ++V WN MI G+  H   +E + LF  +   GL 
Sbjct: 312 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 371

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++ T+I +LS+CSH G+V +G+ +FD M +  +++P + H  CM+DILGRAGLI EA+ 
Sbjct: 372 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 431

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I NMPF+    +W +LL++CR ++N+EL E  +K++  + P++ GN +LLSNIY+A  R
Sbjct: 432 FIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGR 491

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++ A  R   +D  +KK    SW+EI         G ++H ++++I  KLE+L+ EMK+
Sbjct: 492 WDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKR 551

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY+ E      DVE+  K+++L++HSEKLA+ FG++ L  G PI + KNLR+CGDCH+ 
Sbjct: 552 LGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTA 611

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KF + I  RE  VRD NRFHHF NG+C+C DFW
Sbjct: 612 IKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 151/317 (47%), Gaps = 39/317 (12%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++C + ++    K  H   +    N D+   + L   Y  C  +  AR++FDE+P   +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           + WN II +Y  NG    A+ L+ +ML  G  P +++T   VL AC+    + +  ++H 
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRP-NKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A    ++ +VFV TAL+D YAKCG++ +A R+F SM  R+ V W++M+AG     L ++
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ L  + Q  G+  N  TI  V+                                    
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVL------------------------------------ 217

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
               C C++ A  +F  +  +N V W+ MI G+       E + +F  MQ +G+ P+  T
Sbjct: 218 --PTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTT 275

Query: 340 YISVLSACSHIGMVEKG 356
            + VL ACSH+  ++ G
Sbjct: 276 MLGVLPACSHLAALQHG 292



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC   + + E K++H   LK   + +  V   L  +Y  C  +  A R+F+ +P  +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            + W+ ++  +  N  ++ A+ L+     LG+  N++T   V+ AC+GL A+  G ++H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
                G  S++F  ++LVD YAKCG +V+A  +FS +  ++VV WN MI+G S +    +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + L  +MQ+ G+ PN  T + VL  C  +    K    FD+M  ++ V      +S MI
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARK---IFDVMGVRNEV-----SWSAMI 245

Query: 381 DILGRAGLIHEAYDLILNMPF---DATASMWGSLLASCRNYRNLE 422
                +  + EA D+   M     D   +    +L +C +   L+
Sbjct: 246 GGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 290



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L+T+   L +C+   A   G   H  +I  G   DTL  N LI+ YSKCG IS AR+VF
Sbjct: 272 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 331

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + M +  IVSWN +I  Y  +G   EA+ LF ++L  G  P  + T   +L +C+    V
Sbjct: 332 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKP-DDITFICLLSSCSHSGLV 390

Query: 152 FECK-----QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E +         F++   M+  +     ++D+  + GLI +A     +MP   +V  WS
Sbjct: 391 MEGRLWFDAMSRDFSIVPRMEHCI----CMVDILGRAGLIDEAHHFIRNMPFEPDVRIWS 446

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           ++++    ++  E    + ++ Q LG E    F + S I + AG
Sbjct: 447 ALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 490


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/569 (39%), Positives = 316/569 (55%), Gaps = 9/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQSC        GK  H+ +I   LN +      + N Y +CG + GA+ VFD M  +  
Sbjct: 195 LQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNA 254

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W  ++  YT   + + A+ LF  M  EG     EF  S VL  C    D    +Q+H 
Sbjct: 255 VTWTGLMVGYTQAKKLEVALELFARMAMEG-VELDEFVFSIVLKVCCGLEDWDMGRQIHS 313

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +K   +  V VGT L+D Y KCG I  A R F  + E N+V+WS++++GF Q+   E+
Sbjct: 314 HIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLED 373

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            + +F   +  G+  N F  +SV  ACA  A L  G Q H    K G  S ++  S++V 
Sbjct: 374 CIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVT 433

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KCG +  A   F  I+E + V W  +ISG++ H  + E +  F +MQ  G+ PN  T
Sbjct: 434 MYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVT 493

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +I+VL+ACSH G+V + K Y   M + + V P + HY CMID   RAGL+ EA +LI  M
Sbjct: 494 FIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRM 553

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           PF+  A  W SLL  C  + +L+L +IAA+ LF ++P +   ++LL N+Y+A  +WEE  
Sbjct: 554 PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAG 613

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
             RKL+ + E+KKE S SW+ +KG+        R+HP+   IYSKLE+    +     + 
Sbjct: 614 HVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRL 673

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
             E D      S ++E L+ HSEKLA+ FGL+      PI + KNLR C DCH F K  S
Sbjct: 674 LNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVS 733

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            + GR+ +VRD  RFHHF +G CSC D+W
Sbjct: 734 MVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 184/358 (51%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           + Q   ++C + R+   G++ H ++     N      N L+  Y  CG     +KVFDEM
Sbjct: 89  SYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEM 148

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW  +I +Y  NG  ++A+ LF +M   G  P S   +S +L +C     +   
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMS-LLQSCLGPSFLELG 207

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   ++A ++ N+ V TA+ ++Y +CG +  A  VF+ M  +N VTW+ ++ G+ Q 
Sbjct: 208 KQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQA 267

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  E AL LF R  + G+E ++F  S V+  C GL     G+Q+H+ + K G  S +   
Sbjct: 268 KKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVG 327

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + LVD Y KCG +  AY  F  I E N V W+ +ISGFS+  R  + + +F  ++  G+ 
Sbjct: 328 TPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVV 387

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            N   Y SV  AC+    +  G       +K+  ++  ++  S M+ +  + G +  A
Sbjct: 388 LNSFIYTSVFQACAAQANLNMGSQAHGDAIKR-GLVSYLYGESAMVTMYSKCGRLDYA 444


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/575 (37%), Positives = 333/575 (57%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL + L +CA       GK  H   +   +++D  T   L++ Y+KCG  + A   F+ M
Sbjct: 432  TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              R IV+WN++I  Y   G    A+ +F  +      P +  T+  V+ ACA   D+ + 
Sbjct: 492  SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAG-TMVGVVPACALLNDLDQG 550

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
              +H   +K   + +  V  AL+D+YAKCG +  A  +F      ++EVTW+ ++A ++Q
Sbjct: 551  TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N   +EA+  F + ++     N  T  SV+ A A LAA  +G   HA + + GF SN   
Sbjct: 611  NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             +SL+DMYAKCG +  +  +F+ ++ K+ V WN M+SG++ H      + LF  MQ++ +
Sbjct: 671  GNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
              +  +++SVLSAC H G+VE+G+  F  M  ++++ P++ HY+CM+D+LGRAGL  E  
Sbjct: 731  QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
              I  MP +  A +WG+LL SCR + N++L E+A   L  +EP N  + ++LS+IYA + 
Sbjct: 791  GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            RW +  +AR  + D  +KK    SWVE+K        G ++HP++  ++     L+E+M+
Sbjct: 851  RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            K+GY P+    L +VE+  K+  L  HSE+LA+TF L+   PG  I+I+KNLR+C DCH+
Sbjct: 911  KIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHT 970

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              KF S+I  R  IVRD  RFHHF +G CSC D+W
Sbjct: 971  TTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 185/350 (52%), Gaps = 12/350 (3%)

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
            SN LI+ YSKCG +  AR+VFD+M  +  VSW T++  Y  NG   E + LF  M + G
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLG 323

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
               ++ +  S   A A   D+ + K++H  AL+  +D ++ V T L+ +YAKCG    A
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKA 383

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            ++F  +  R+ V WS+++A  VQ    EEAL LF+  Q   ++ N+ T+ S++ ACA L
Sbjct: 384 KQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADL 443

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
           + L  GK +H    K    S++   ++LV MYAKCG    A   F+ +  +++V WN++I
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           +G+++       + +F K++ + ++P+  T + V+ AC+ +  +++G     L+VK    
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG-- 561

Query: 370 LPNVFHYSC-----MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
               F   C     +ID+  + G +  A  L     F      W  ++A+
Sbjct: 562 ----FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 174/331 (52%), Gaps = 3/331 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G   H +I   GL  D      L++ YSK G +  AR+VFD+M
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +V+WN +I   + +    EAV  F +M   G  P S  ++ ++        ++  C
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP-SSVSLLNLFPGICKLSNIELC 249

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H +  +   D +  V   L+D+Y+KCG +  A RVF+ M ++++V+W +M+AG+  N
Sbjct: 250 RSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHN 307

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             + E L LF + ++  +  N+ +  S   A A    L +GK++H    +    S++  A
Sbjct: 308 GCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVA 367

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+ MYAKCG    A  +F G++ +++V W+ +I+   +     E + LF++MQ   + 
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           PN  T +S+L AC+ + +++ GKS     VK
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVK 458



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 197/366 (53%), Gaps = 18/366 (4%)

Query: 8   KHKFYYKSFSSSAIASAS----ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMG 63
           KH+   +SF+S A A++     +++  T        L SC      ++    HA+II  G
Sbjct: 4   KHQLR-RSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQ---IHAQIIVSG 59

Query: 64  LNNDTLTSNILINFYS---KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
             +    ++ LIN YS   KC L   AR VFD  P    + WN++I +YT + +  EA+ 
Sbjct: 60  FKHHHSITH-LINLYSLFHKCDL---ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALE 115

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           ++  M+ +G  P  ++T + VL AC    ++ E    H    +  ++R+VF+G  L+D+Y
Sbjct: 116 MYYCMVEKGLEP-DKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMY 174

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           +K G +  A  VF+ MP+R+ V W++M+AG  Q+E   EA+  FR  Q++G+E +  ++ 
Sbjct: 175 SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLL 234

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           ++      L+ +   + +H  + +  F S +  ++ L+D+Y+KCG V  A  VF  + ++
Sbjct: 235 NLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDVDVARRVFDQMVDQ 292

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           + V W TM++G++ +   VEV+ LF+KM+   +  N+ + +S   A +    +EKGK   
Sbjct: 293 DDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIH 352

Query: 361 DLMVKQ 366
              ++Q
Sbjct: 353 GCALQQ 358



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 6/318 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T+   + +CA      +G   H  I+ +G  +D    N LI+ Y+KCG +  A  +F
Sbjct: 530 DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 92  DEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           ++    +  V+WN II +Y  NG  +EA++ F  M  E   P S  T  SVL A A    
Sbjct: 590 NKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNS-VTFVSVLPAAAYLAA 648

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
             E    H   ++     N  VG +L+D+YAKCG +  + ++F  M  ++ V+W++M++G
Sbjct: 649 FREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSG 708

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGS 269
           +  +   + A+ LF   Q   ++ +  +  SV+ AC     + +G+++ H++  K     
Sbjct: 709 YAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKP 768

Query: 270 NMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           ++   + +VD+  + G   +   F+     E +  +W  ++     H+      +  + +
Sbjct: 769 DLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHL 828

Query: 329 QQAGLHPNEQTYISVLSA 346
            +  L P    +  VLS+
Sbjct: 829 VK--LEPRNPAHFVVLSS 844



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 14/245 (5%)

Query: 174 TALLDVYA---KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           T L+++Y+   KC L   A  VF+S P  + + W+SM+  + +++ Y EAL ++      
Sbjct: 67  THLINLYSLFHKCDL---ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK 123

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GLE +++T + V+ AC G   L +G   H  + + G   ++F  + LVDMY+K G +  A
Sbjct: 124 GLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRA 183

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  + +++VV WN MI+G S+     E +  F  MQ  G+ P+  + +++      +
Sbjct: 184 REVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL 243

Query: 351 GMVEKGKSYFDLMVKQH--NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             +E  +S    + ++   + + N      +ID+  + G +  A  +   M  D     W
Sbjct: 244 SNIELCRSIHGYVFRRDFSSAVSN-----GLIDLYSKCGDVDVARRVFDQM-VDQDDVSW 297

Query: 409 GSLLA 413
           G+++A
Sbjct: 298 GTMMA 302


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 333/561 (59%), Gaps = 17/561 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H  ++ +G   D   +  L++ YS+ GL+  ARK+FD+MP R   SWN +I  Y  
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG   EA+ +   M  EG       TV+SVL  CA   D+   K +H++ +K  ++  +F
Sbjct: 73  NGNAAEALDIADEMRLEG-VKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELF 131

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA----LILFRRA 227
           V  AL+++YAK G +  A +VF  +  ++ V+W++++ G+ QN L  EA    L++    
Sbjct: 132 VSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHE 190

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +++    NQ T  S++ A + + AL QG ++H  + K    S++F  + L+DMY KCG +
Sbjct: 191 EIIP---NQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKL 247

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            DA  +F  +  KN V WN MIS +  H    + + LF +M+   + P+  T++S+LSAC
Sbjct: 248 DDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSAC 307

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           SH G+V   +  F++M +++ + P++ HY CM+D+ GRAG +  A++ I  MP    AS 
Sbjct: 308 SHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASA 367

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           WG+LL +CR + N+EL + A+++LF ++ +N G ++LLSNIYA   +WE V   R L RD
Sbjct: 368 WGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARD 427

Query: 468 SEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             ++K    S + +         G + HP+  EIY +L  L  ++K +GY P+    L D
Sbjct: 428 RGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQD 487

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           VE+  K+ +L+ HSE+LA+ +G++   P  PIRI KNLR+CGDCH+  KF S I  RE I
Sbjct: 488 VEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREII 547

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           VRD +RFHHF  G+CSC D+W
Sbjct: 548 VRDSSRFHHFKGGTCSCGDYW 568



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 164/263 (62%), Gaps = 10/263 (3%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           V+ AC    D+ + K++H   LK   + +VFV  +L+ +Y++ GL+ DA ++F+ MP R+
Sbjct: 3   VVKACG---DLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
             +W++M++G+ QN    EAL +    ++ G++ +  T++SV+  CA +  ++ GK +H 
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHL 119

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH---AR 317
            + K G    +F +++L++MYAK G +  A  VF G+  K+VV WNT+I+G++++   + 
Sbjct: 120 YVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASE 178

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           ++EV +L E+ ++  + PN+ T++S+L A SH+G +++G      ++K + +  +VF  +
Sbjct: 179 AIEVYLLMEEHEE--IIPNQGTWVSILPAYSHVGALQQGMRIHGQVIK-NCLYSDVFVGT 235

Query: 378 CMIDILGRAGLIHEAYDLILNMP 400
           C+ID+ G+ G + +A  L   +P
Sbjct: 236 CLIDMYGKCGKLDDAISLFYQVP 258



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            T  + L + +   A  +G   H ++I   L +D      LI+ Y KCG +  A  +F +
Sbjct: 197 GTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQ 256

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +P++  V WN +I  Y  +G  ++A+ LF  M  E   P    T  S+L AC+    V +
Sbjct: 257 VPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKP-DHITFVSLLSACSHSGLVSD 315

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMV 208
            +   ++   +  +  ++     ++D++ + G +  A    + MP + + + W +++
Sbjct: 316 AQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALL 372


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 338/574 (58%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L++C R      G+  H++II      +    ++LI+ Y+K G +  A  +    
Sbjct: 452  TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 511

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              + +VSW T+I  YT    + +A+  F  ML  G     E  +++ + ACA  + + E 
Sbjct: 512  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS-DEVGLTNAVSACAGLQALKEG 570

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            +Q+H  A  +    ++    AL+ +Y++CG I ++   FE     + + W+++V+GF Q+
Sbjct: 571  QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQS 630

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EEAL +F R    G++ N FT  S + A +  A + QGKQVHAV+ KTG+ S     
Sbjct: 631  GNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVC 690

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            ++L+ MYAKCG + DA   F  +  KN V WN +I+ +S+H    E +  F++M  + + 
Sbjct: 691  NALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVR 750

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            PN  T + VLSACSHIG+V+KG +YF+ M  ++ + P   HY C++D+L RAGL+  A +
Sbjct: 751  PNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKE 810

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             I  MP    A +W +LL++C  ++N+E+ E AA  L  +EP+++  ++LLSN+YA +++
Sbjct: 811  FIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKK 870

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
            W+     R+ +++  VKKE  +SW+E+K        G +NHP   EI+   + L +   +
Sbjct: 871  WDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASE 930

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            +GY  +    L++++  +K  ++  HSEKLA++FGL+ L   VPI +MKNLR+C DCH++
Sbjct: 931  IGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAW 990

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF S+++ RE IVRD  RFHHF  G+CSC D+W
Sbjct: 991  IKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 213/429 (49%), Gaps = 15/429 (3%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPV-RGKVCHAKIIGMGLNNDTLTSN 72
           +SF    I S           TL+  L+ C +    +  G+  H++I+ +GL+++   S 
Sbjct: 25  ESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSE 84

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            L +FY   G + GA KVFDEMP+R I +WN +I    +     E   LF+ M+ E  TP
Sbjct: 85  KLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTP 144

Query: 133 YSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
            +E T S VL AC      F+  +Q+H   L   +  +  V   L+D+Y++ G +  A R
Sbjct: 145 -NEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARR 203

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+ +  ++  +W +M++G  +NE   EA+ LF    VLG+    +  SSV+ AC  + +
Sbjct: 204 VFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIES 263

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H ++ K GF S+ +  ++LV +Y   G ++ A  +FS + +++ V +NT+I+G
Sbjct: 264 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 323

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            S+     + M LF++M   GL P+  T  S++ ACS  G + +G+       K      
Sbjct: 324 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 383

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA----------SCRNYRNL 421
           N      ++++  +   I  A D  L    +    +W  +L           S R +R +
Sbjct: 384 NKIE-GALLNLYAKCADIETALDYFLETEVENVV-LWNVMLVAYGLLDDLRNSFRIFRQM 441

Query: 422 ELAEIAAKQ 430
           ++ EI   Q
Sbjct: 442 QIEEIVPNQ 450



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 175/332 (52%), Gaps = 1/332 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + + +C+ +    RG+  HA    +G  ++      L+N Y+KC  I  A   F E
Sbjct: 350 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 409

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                +V WN ++ +Y      + +  +F  M  E   P +++T  S+L  C    D+  
Sbjct: 410 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP-NQYTYPSILKTCIRLGDLEL 468

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+H   +K     N +V + L+D+YAK G +  A  +      ++ V+W++M+AG+ Q
Sbjct: 469 GEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQ 528

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               ++AL  FR+    G+  ++  +++ + ACAGL AL +G+Q+HA  C +GF S++  
Sbjct: 529 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 588

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV +Y++CG + ++Y  F   E  + + WN ++SGF +   + E + +F +M + G+
Sbjct: 589 QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGI 648

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             N  T+ S + A S    +++GK    ++ K
Sbjct: 649 DNNNFTFGSAVKAASETANMKQGKQVHAVITK 680


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/567 (38%), Positives = 337/567 (59%), Gaps = 43/567 (7%)

Query: 35  TLQATLQSCARERAPVRG-KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  A + +C   ++ +RG K     +I  GL+ D    N ++  + KCG++  AR++FDE
Sbjct: 133 TYDALVSACIGLKS-IRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDE 191

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP++ I+SWNTIIG     G   EA  LF+ M ++     S   V+ ++ A A    +F 
Sbjct: 192 MPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVT-MIRASAGLGLIFA 250

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +QLH  +LK  +  +VFV  AL+D+Y+KCG I DA  VF+ MPE+  V W+S++AG+  
Sbjct: 251 GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYAL 310

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   EEAL ++   +  G++ + FT S +I  CA LA+L   KQ HA L + GFG ++ A
Sbjct: 311 HGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVA 370

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LVD+Y+K G + DA  VF  +  KNV+ WN +I+G+  H R VE + +FE+M   G+
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGM 430

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T+++VLSACS+ G+ ++G   F+ M + H + P   HY+CMI++LGR GL+ EA+
Sbjct: 431 VPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI + PF  T +MW +LL +CR ++N EL + AA++L+GM P+   N+++L NIY  + 
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSG 550

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513
           R EE A                                        L+ E+ K GY P+ 
Sbjct: 551 RLEEAA---------------------------------------ALMLEISKHGYVPQD 571

Query: 514 EHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRI 573
           +  L DV D +++ +L++HSEKLA+ FGL+      P++I+++ RICGDCHS +K  + +
Sbjct: 572 KFLLPDV-DEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALV 630

Query: 574 AGRETIVRDLNRFHHFTNGSCSCWDFW 600
             RE +VRD +RFHHF +GSCSC D+W
Sbjct: 631 TRREIVVRDASRFHHFKDGSCSCGDYW 657


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 338/574 (58%), Gaps = 9/574 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L++C R      G+  H++II      +    ++LI+ Y+K G +  A  +    
Sbjct: 492  TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              + +VSW T+I  YT    + +A+  F  ML  G     E  +++ + ACA  + + E 
Sbjct: 552  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS-DEVGLTNAVSACAGLQALKEG 610

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            +Q+H  A  +    ++    AL+ +Y++CG I ++   FE     + + W+++V+GF Q+
Sbjct: 611  QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQS 670

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EEAL +F R    G++ N FT  S + A +  A + QGKQVHAV+ KTG+ S     
Sbjct: 671  GNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVC 730

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            ++L+ MYAKCG + DA   F  +  KN V WN +I+ +S+H    E +  F++M  + + 
Sbjct: 731  NALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVR 790

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            PN  T + VLSACSHIG+V+KG +YF+ M  ++ + P   HY C++D+L RAGL+  A +
Sbjct: 791  PNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKE 850

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             I  MP    A +W +LL++C  ++N+E+ E AA  L  +EP+++  ++LLSN+YA +++
Sbjct: 851  FIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKK 910

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
            W+     R+ +++  VKKE  +SW+E+K        G +NHP   EI+   + L +   +
Sbjct: 911  WDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASE 970

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            +GY  +    L++++  +K  ++  HSEKLA++FGL+ L   VPI +MKNLR+C DCH++
Sbjct: 971  IGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAW 1030

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF S+++ RE IVRD  RFHHF  G+CSC D+W
Sbjct: 1031 IKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 213/429 (49%), Gaps = 15/429 (3%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPV-RGKVCHAKIIGMGLNNDTLTSN 72
           +SF    I S           TL+  L+ C +    +  G+  H++I+ +GL+++   S 
Sbjct: 65  ESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSE 124

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            L +FY   G + GA KVFDEMP+R I +WN +I    +     E   LF+ M+ E  TP
Sbjct: 125 KLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTP 184

Query: 133 YSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
            +E T S VL AC      F+  +Q+H   L   +  +  V   L+D+Y++ G +  A R
Sbjct: 185 -NEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARR 243

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+ +  ++  +W +M++G  +NE   EA+ LF    VLG+    +  SSV+ AC  + +
Sbjct: 244 VFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIES 303

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H ++ K GF S+ +  ++LV +Y   G ++ A  +FS + +++ V +NT+I+G
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            S+     + M LF++M   GL P+  T  S++ ACS  G + +G+       K      
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA----------SCRNYRNL 421
           N      ++++  +   I  A D  L    +    +W  +L           S R +R +
Sbjct: 424 NKIE-GALLNLYAKCADIETALDYFLETEVENVV-LWNVMLVAYGLLDDLRNSFRIFRQM 481

Query: 422 ELAEIAAKQ 430
           ++ EI   Q
Sbjct: 482 QIEEIVPNQ 490



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 175/332 (52%), Gaps = 1/332 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + + +C+ +    RG+  HA    +G  ++      L+N Y+KC  I  A   F E
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 449

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                +V WN ++ +Y      + +  +F  M  E   P +++T  S+L  C    D+  
Sbjct: 450 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP-NQYTYPSILKTCIRLGDLEL 508

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+H   +K     N +V + L+D+YAK G +  A  +      ++ V+W++M+AG+ Q
Sbjct: 509 GEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQ 568

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               ++AL  FR+    G+  ++  +++ + ACAGL AL +G+Q+HA  C +GF S++  
Sbjct: 569 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 628

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV +Y++CG + ++Y  F   E  + + WN ++SGF +   + E + +F +M + G+
Sbjct: 629 QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGI 688

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             N  T+ S + A S    +++GK    ++ K
Sbjct: 689 DNNNFTFGSAVKAASETANMKQGKQVHAVITK 720


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/551 (39%), Positives = 343/551 (62%), Gaps = 13/551 (2%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           GL  + +    +I+ Y KCG +  AR  F+E+  +  V+WN ++ +Y  +GR++EA+ LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 123 INMLREGKTPYSE-FTVSSVLCACAAKRDVFECKQLHVFALKAA--MDRNVFVGTALLDV 179
             M    ++   + F+ S  + AC+   D+ + +++H    +    + ++V VGTALL++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 180 YAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQNELYEEALILFRRAQ-VLGLEYNQF 237
           Y+KCG + +A +VF+S+  + + V W++M+A + Q+   ++AL L+R       L   Q 
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T  +VI  CA L+AL QG+ +HA +  T F +N+  +++LV MY KCGC+ +A  VF  +
Sbjct: 241 TFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 300

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           + K+ + WNT+IS ++ H  S + ++L+++M   G+ P E T++ +LSACSH G+V  G 
Sbjct: 301 KLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGL 360

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
            YF  M   H + P+V H+ C+ID+LGR G + EA  ++ +MP  A A  W SLL +C+ 
Sbjct: 361 DYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKT 420

Query: 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477
           + +L+    AA Q+    P  +G ++LLSNIYAA  RW++V + RK++    VKK   KS
Sbjct: 421 HGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKS 480

Query: 478 WVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL 529
           W+EI         G R+HP+  EIY +L K+VEEMK LGY P+T    HD+E+  K++LL
Sbjct: 481 WIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLL 540

Query: 530 IHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHF 589
           + HSEKLA+ +G M +     +RI+KNLR+C DCH+  KF SRI GR+ +VRD  RFH F
Sbjct: 541 VCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLF 600

Query: 590 TNGSCSCWDFW 600
            NGSCSC D+W
Sbjct: 601 ENGSCSCRDYW 611



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 112/212 (52%), Gaps = 5/212 (2%)

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA--LIQGKQVHAVLCKT 265
           +A F  N  + EAL+ FRR    G   ++ T S ++ A A + A  + QG+++H     +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   N+   ++++ MY KCG + DA   F  ++ KN V WN M++ +    R  E + LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 326 EKM--QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL-PNVFHYSCMIDI 382
            +M  +     P++ ++   + ACS++  +E+G+   +++ ++   L  +V   + ++++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
             + G + EA  +  ++  DA +  W +++A+
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAA 212



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 29  NATELSTLQAT----LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           + T+L+  Q T    +  CA   A  +G+  HA++     + + L SN L++ Y KCG +
Sbjct: 231 DTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCL 290

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             A  VF  M  +  +SWNTII SY  +G   +A+ L+  M  +G  P +E T   +L A
Sbjct: 291 DEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKP-TEVTFVGLLSA 349

Query: 145 CAAKRDVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEV 202
           C+    V +     +       +  +V     ++D+  + G +++A  V +SMP + N V
Sbjct: 350 CSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAV 409

Query: 203 TWSSMVA 209
            W S++ 
Sbjct: 410 QWMSLLG 416


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/575 (36%), Positives = 342/575 (59%), Gaps = 10/575 (1%)

Query: 32   ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
            +L+TL + L + A       G+  H   +    + + + SN L++ YSKCG ++GA +VF
Sbjct: 570  DLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF 629

Query: 92   DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
             +M    IVSW + I +Y   G   +A+ LF  M  +G  P   +TV+S++ ACA    +
Sbjct: 630  VKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRP-DIYTVTSIVHACACSSSL 688

Query: 152  FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             + + +H + +K  M  N+ V  AL+++YAKCG + +A  VF  +P ++ V+W++M+ G+
Sbjct: 689  DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 748

Query: 212  VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             QN L  EAL LF   Q    + +  T++ V+ ACAGLAAL +G+++H  + + G+ S++
Sbjct: 749  SQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 807

Query: 272  FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              A +LVDMYAKCG +V A  +F  I +K+++ W  MI+G+  H    E +  F +M+ A
Sbjct: 808  HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIA 867

Query: 332  GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            G+ P+E ++  +L+ACSH G++ +G  +F+ M  +  V P + HY+C++D+L R G + +
Sbjct: 868  GIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSK 927

Query: 392  AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
            AY  I +MP     ++WG LL+ CR + +++LAE  A+ +F +EPDN   +++L+N+YA 
Sbjct: 928  AYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAE 987

Query: 452  NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEE 503
              +WEEV + RK ++    K+    SW+E+ GK N        HP+   I   L KL  +
Sbjct: 988  AEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQ 1047

Query: 504  MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
            M+   Y     + L + +D  K+ +   HSEK A+ FG++ L PG  +R+ KN R+CGDC
Sbjct: 1048 MQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDC 1107

Query: 564  HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            H   KF S+   RE ++RD NRFHHF +G CSC D
Sbjct: 1108 HEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 195/381 (51%), Gaps = 3/381 (0%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L++  + LQ CA +++   GK  H+ II  G++ D      L+  Y  CG +   RK+FD
Sbjct: 369 LNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFD 428

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           ++    +  WN ++  Y   G  +E+V+LF  M + G      +T + VL   AA   V 
Sbjct: 429 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNC-YTFTCVLKCFAALGKVK 487

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           ECK++H + LK     N  V  +L+  Y K G +  A  +F+ + E + V+W+SM+ G V
Sbjct: 488 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 547

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            N      L +F +  +LG+E +  T+ SV+ A A +  L  G+ +H    K  F   + 
Sbjct: 548 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVV 607

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +++L+DMY+KCG +  A  VF  + +  +V W + I+ + R     + + LF++MQ  G
Sbjct: 608 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T  S++ AC+    ++KG+     ++K + +  N+   + +I++  + G + EA
Sbjct: 668 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEA 726

Query: 393 YDLILNMPFDATASMWGSLLA 413
             +   +P     S W +++ 
Sbjct: 727 RLVFSKIPVKDIVS-WNTMIG 746


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 343/558 (61%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H+ ++      +   +N L++FYSK   I  ARK+F EMP+   +S+N +I     
Sbjct: 259 GQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAW 318

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NGR +E++ LF   L+  +    +F  +++L   A   ++   +Q+H  A+       V 
Sbjct: 319 NGRVEESLELF-RELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVL 377

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG +L+D+YAKC    +A+R+F  +  ++ V W+++++G+VQ  L+E+ L LF       
Sbjct: 378 VGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAK 437

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  +  T +S++ ACA LA+L  GKQ+H+ + ++G  SN+F+ S+LVDMYAKCG + +A 
Sbjct: 438 IGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEAL 497

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  +  +N V WN +IS ++++      +  FE+M  +GL PN  +++S+L ACSH G
Sbjct: 498 QMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCG 557

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+G  YF+ M + + + P   HY+ M+D+L R+G   EA  L+  MPF+    MW S+
Sbjct: 558 LVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSI 617

Query: 412 LASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           L SCR ++N ELA  AA QLF M+   +A  ++ +SNIYAA   W+ V + +K +R+  +
Sbjct: 618 LNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGI 677

Query: 471 KKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           +K  + SWVEIK K +        HP+  EI  KL++L ++M++ GYKP++   LH+V++
Sbjct: 678 RKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDE 737

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K E L +HSE++A+ F L+    G PI +MKNLR C DCH+ +K  S+I  RE  VRD
Sbjct: 738 EVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRD 797

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFHHFT+GSCSC D+W
Sbjct: 798 SSRFHHFTDGSCSCKDYW 815



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 187/359 (52%), Gaps = 3/359 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  ++ +G ++  +  N L++ Y K   +  A  +F  M ++  V++N ++  Y+  G  
Sbjct: 162 HGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFN 221

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +A+ LF  M   G  P SEFT ++VL A     D+   +Q+H F +K     NVFV  A
Sbjct: 222 HDAINLFFKMQDLGFRP-SEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANA 280

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+K   I +A ++F  MPE + ++++ ++     N   EE+L LFR  Q    +  
Sbjct: 281 LLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRR 340

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           QF  ++++   A    L  G+Q+H+    T   S +   +SLVDMYAKC    +A  +F+
Sbjct: 341 QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFA 400

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  ++ V W  +ISG+ +     + + LF +M +A +  +  TY S+L AC+++  +  
Sbjct: 401 DLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTL 460

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           GK     +++    L NVF  S ++D+  + G I EA  +   MP   + S W +L+++
Sbjct: 461 GKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVS-WNALISA 517



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 181/349 (51%), Gaps = 3/349 (0%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + + +++N +I  Y K G +S AR +FD M QR +V+W  +IG Y  + R  EA  LF +
Sbjct: 70  HKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFAD 129

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M R G  P    T++++L        V E  Q+H   +K   D  + V  +LLD Y K  
Sbjct: 130 MCRHGMVP-DHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTR 188

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            +  A  +F+ M E++ VT+++++ G+ +     +A+ LF + Q LG   ++FT ++V+ 
Sbjct: 189 SLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLT 248

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           A   +  +  G+QVH+ + K  F  N+F A++L+D Y+K   +V+A  +F  + E + + 
Sbjct: 249 AGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGIS 308

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           +N +I+  + + R  E + LF ++Q       +  + ++LS  ++   +E G+      +
Sbjct: 309 YNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAI 368

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
              + +  V   + ++D+  +     EA  +  ++   ++   W +L++
Sbjct: 369 VT-DAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVP-WTALIS 415



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  + L++CA   +   GK  H++II  G  ++  + + L++ Y+KCG I  A ++F E
Sbjct: 443 ATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQE 502

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R  VSWN +I +Y  NG    A+  F  M+  G  P S  +  S+LCAC+    V E
Sbjct: 503 MPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNS-VSFLSILCACSHCGLVEE 561

Query: 154 CKQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
             Q       V+ L+   +       +++D+  + G   +A ++   MP E +E+ WSS+
Sbjct: 562 GLQYFNSMTQVYKLEPRREHYA----SMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSI 617

Query: 208 V 208
           +
Sbjct: 618 L 618


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 350/621 (56%), Gaps = 56/621 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +CA   A   GK  H   +  GL +D    N L++ Y+KC  ++ A KVF+ +
Sbjct: 236 TLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGI 295

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE-------------------------- 128
            ++ +VSWN ++  Y+  G    A++LF  M  E                          
Sbjct: 296 KKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEAL 355

Query: 129 ---------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN-------VFV 172
                    G  P +  T++S+L  CA+   +   KQ H + +K  ++ N       + V
Sbjct: 356 DVFRQMQLYGLEP-NVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLV 414

Query: 173 GTALLDVYAKCGLISDASRVFESM--PERNEVTWSSMVAGFVQNELYEEALILFRR--AQ 228
              L+D+YAKC     A  +F+S+   ++N VTW+ M+ G+ Q+    +AL LF +   Q
Sbjct: 415 LNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQ 474

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN-MFAASSLVDMYAKCGCV 287
              L+ N FT+S  + ACA L  L  G+Q+HA   +    S  ++  + L+DMY+K G +
Sbjct: 475 KTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDI 534

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  VF  ++ +NVV W ++++G+  H R  E + LF++MQ+ G   +  T++ VL AC
Sbjct: 535 DAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYAC 594

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           SH GMV++G  YF  MVK   + P   HY+CM+D+LGRAG ++EA +LI NM  + TA +
Sbjct: 595 SHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVV 654

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           W +LL++ R + N+EL E AA +L  +  +N G++ LLSN+YA  RRW++VAR R L++ 
Sbjct: 655 WVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKH 714

Query: 468 SEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
           + ++K    SW++ K        G R+HP   +IY+ L  L++ +K +GY P+T   LHD
Sbjct: 715 TGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHD 774

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           V+D  K +LL  HSEKLA+ +G++   PG PIRI KNLRICGDCHS + + S I   E +
Sbjct: 775 VDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIV 834

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           +RD +RFHHF  GSCSC  +W
Sbjct: 835 LRDSSRFHHFKKGSCSCRSYW 855



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 213/429 (49%), Gaps = 52/429 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C    +   G   HA +   GL ++    N ++  Y +CG +  A ++FDE+
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 95  PQR---CIVSWNTIIGSYTTNGREQEAVALFINMLREG--KTPYSEFTVSSVLCACAAKR 149
            +R    IVSWN+I+ +Y   G+ + A+ +   M      K      T+ ++L ACA+  
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            +   KQ+H F+++  +  +VFVG AL+ +YAKC  +++A++VFE + +++ V+W++MV 
Sbjct: 249 ALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVT 308

Query: 210 GFVQNELYE-----------------------------------EALILFRRAQVLGLEY 234
           G+ Q   ++                                   EAL +FR+ Q+ GLE 
Sbjct: 309 GYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEP 368

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN-------MFAASSLVDMYAKCGCV 287
           N  T++S++  CA + AL+ GKQ HA + K     N       +   + L+DMYAKC   
Sbjct: 369 NVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSY 428

Query: 288 VDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNEQTYISV 343
             A  +F  IE  +KNVV W  MI G+++H  + + + LF ++  Q+  L PN  T    
Sbjct: 429 RVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCA 488

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           L AC+ +G +  G+      ++  N    ++  +C+ID+  ++G I  A  +  NM    
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548

Query: 404 TASMWGSLL 412
             S W SL+
Sbjct: 549 VVS-WTSLM 556



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 167/373 (44%), Gaps = 50/373 (13%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM- 94
           L + L+ C   +  +  K+ H +I   G    T   +  +  Y +CG  + A  +   + 
Sbjct: 33  LISLLRQC---KTLINAKLAHQQIFVHGF---TEMFSYAVGAYIECGASAEAVSLLQRLI 86

Query: 95  -PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                +  WN +I      G   + +  +  M R G  P   +T   VL AC     +  
Sbjct: 87  PSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP-DHYTFPFVLKACGEIPSLRH 145

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER---NEVTWSSMVAG 210
              +H       +  NVF+  +++ +Y +CG + DA ++F+ + ER   + V+W+S++A 
Sbjct: 146 GASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAA 205

Query: 211 FVQNELYEEAL-ILFRRAQ--VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +VQ      AL I FR      L L  +  T+ +++ ACA + AL  GKQVH    + G 
Sbjct: 206 YVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGL 265

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS-------------- 313
             ++F  ++LV MYAKC  + +A  VF GI++K+VV WN M++G+S              
Sbjct: 266 VDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKM 325

Query: 314 ---------------------RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
                                +     E + +F +MQ  GL PN  T  S+LS C+ +G 
Sbjct: 326 MQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGA 385

Query: 353 VEKGKSYFDLMVK 365
           +  GK     ++K
Sbjct: 386 LLYGKQTHAYVIK 398


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 313/538 (58%), Gaps = 40/538 (7%)

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           WN+ + +        +A+ LF   LR+       FT SSVL AC    D+   + LH   
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYR-LRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVV 154

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW----------------- 204
            K     N+++   ++ +YA CG + +A  +FE MP+R+ VTW                 
Sbjct: 155 EKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAY 214

Query: 205 --------------SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
                         +SM+AG+VQ    +EA+ LF + +  G++ N+ T+ +V+ ACA L 
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           AL  G ++H    + GF  N+  +++L+DMY KCGC+ +A  VF  +EE+ VV W+ MI 
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           G + H R+ E + LF  M Q G+ PN  T+I +L ACSH+G++ +G+ +F  M + + ++
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P + HY CM+D+L RAGL+HEA++ ILNMP      +WG+LL +CR ++N+E+AE A K 
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-------- 482
           L  ++P N G +++LSNIYA   RWE+ AR RK ++D +VKK    S + +         
Sbjct: 455 LLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVA 514

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
           G+ +HP   +I+ + E+L+EEM+  GY P T   L D+E+  K + +  HSEKLAL FGL
Sbjct: 515 GEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGL 574

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           M      PIRIMKNLRIC DCHS  K  S I  RE +VRD NRFH F + SCSC D+W
Sbjct: 575 MNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 158/320 (49%), Gaps = 35/320 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C        G++ H  +  +G  ++    N++++ Y+ CG +  AR +F++M
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKM 189

Query: 95  PQRCIVSWN-------------------------------TIIGSYTTNGREQEAVALFI 123
           PQR +V+WN                               ++I  Y   G+ +EA+ LF 
Sbjct: 190 PQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFA 249

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M  E     +E TV +VL ACA    +    ++H ++ +    RNV +   L+D+Y KC
Sbjct: 250 KM-EEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC 308

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + +A +VFE M ER  V+WS+M+ G   +   EEAL LF     +G+E N  T   ++
Sbjct: 309 GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368

Query: 244 CACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKN 301
            AC+ +  + +G++  A + +  G    +     +VD+ ++ G + +A+ F+ +   + N
Sbjct: 369 HACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPN 428

Query: 302 VVLWNTMISGFSRHARSVEV 321
            V+W  ++ G  R  ++VE+
Sbjct: 429 GVVWGALL-GACRVHKNVEM 447



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 154/335 (45%), Gaps = 54/335 (16%)

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N + Q +  L I++LR   +P                   FE +Q+H   +K     ++ 
Sbjct: 21  NVKPQSSETLKIDLLRNFNSP-------------------FELRQVHAQIIKTNAPLSIL 61

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELYEEALILFRRAQV 229
             T +  V A       A ++F+ + ++   T  W+S +    + +   +A++LF R + 
Sbjct: 62  PLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQ 121

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             +  + FT SSV+ AC  L  L  G+ +H V+ K GF SN++  + +V +YA CG + +
Sbjct: 122 YDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181

Query: 290 AYFVFSGIEEKNVVLWN-------------------------------TMISGFSRHARS 318
           A  +F  + +++VV WN                               +MI+G+ +  ++
Sbjct: 182 ARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKA 241

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E + LF KM++AG+  NE T ++VL+AC+ +G ++ G    +    +H    NV   + 
Sbjct: 242 KEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEY-SNRHGFKRNVRISNT 300

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +ID+  + G + EA  +   M  + T   W +++ 
Sbjct: 301 LIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIG 334


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 337/581 (58%), Gaps = 13/581 (2%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           NA  +S++     +    R     K  H   +  G   +      L++ YSK G +  AR
Sbjct: 121 NAVTISSVLPAFANLGLIRI---AKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVAR 177

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           ++F+ M +R +VSWN I+  Y+ +G  +EA+ LF N++R        +T+ S++ A  + 
Sbjct: 178 QLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLF-NLMRRKGLLVDFYTIMSLIPASLSV 236

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
             +     +H F ++   + +  + TAL+D+Y     + DA RVF  M  ++   W+ M+
Sbjct: 237 GCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLML 296

Query: 209 AGFVQNELYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            GF     ++ A+  F +   +  L+ +   +  ++ +C+   AL QG++VHA+  KT F
Sbjct: 297 TGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCF 356

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            +N+F  S+++DMYA CG + DA   F G+ EK+VV WN MI+G   +    + + LF +
Sbjct: 357 ANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQ 416

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M+ +GL P+E T++SVL ACSH GMV +G   F  MVK  + +PN+ HY+C+IDILGRAG
Sbjct: 417 MKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAG 476

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            +  AY  I NMPF     ++ +LL +CR + N++L    ++++F MEP++AG ++LLSN
Sbjct: 477 QLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSN 536

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEK 499
           +YA    WE V   R  +R   +KK+   S +EI         G+++HP+  +I   L+ 
Sbjct: 537 MYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKG 596

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           L+ ++KK GY P T   L DV D  K+++L HHSEK+A+ FGLM   PG  IRI KNLR 
Sbjct: 597 LILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRT 656

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCHS  KF S++ GR  +++D NRFH F +G CSC D+W
Sbjct: 657 CNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 201/387 (51%), Gaps = 6/387 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+II  GL ++T  SN L+N Y  CGL++ A+++F   P + +VSW  +I     N   
Sbjct: 44  HAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCF 103

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            EA+ +F  M      P +  T+SSVL A A    +   K +H F ++   + NVFV TA
Sbjct: 104 VEAIDVFREMTMGNFKP-NAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D+Y+K G +  A ++FESM ERN V+W+++V+G+  +   EEA+ LF   +  GL  +
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVD 222

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            +TI S+I A   +  L  G  +H  + +TG+ ++    ++L+D+Y    CV DA+ VFS
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-AGLHPNEQTYISVLSACSHIGMVE 354
            +  K+V  W  M++GFS        +  F KM     L  +    + +LS+CSH G ++
Sbjct: 283 EMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQ 342

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA- 413
           +G+    L +K      N+F  S +ID+    G + +A      M  +     W +++A 
Sbjct: 343 QGRRVHALAIKT-CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMG-EKDVVCWNAMIAG 400

Query: 414 -SCRNYRNLELAEIAAKQLFGMEPDNA 439
                Y    +      +  G++PD +
Sbjct: 401 NGMNGYGTDAIDLFLQMKGSGLDPDES 427



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 126/217 (58%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           +D+   +Q+H   + + +  N F+  +L++ Y  CGL++DA ++F   P +N V+W+ ++
Sbjct: 35  KDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILI 94

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           +G  +N+ + EA+ +FR   +   + N  TISSV+ A A L  +   K VH    + GF 
Sbjct: 95  SGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFE 154

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            N+F  ++LVDMY+K GC+  A  +F  + E+NVV WN ++SG+S H  S E + LF  M
Sbjct: 155 GNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLM 214

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           ++ GL  +  T +S++ A   +G ++ G      +++
Sbjct: 215 RRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR 251


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/599 (37%), Positives = 348/599 (58%), Gaps = 39/599 (6%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG----------------- 82
           + +C R R    GK  HA           + SN LI+ Y+KCG                 
Sbjct: 70  IAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDL 129

Query: 83  -----LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
                +ISG         ARK+FDEMP R   SWN +I  Y + G   EA+ LF  M   
Sbjct: 130 CSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQEN 189

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
             +  + FT+SS L A AA   +   K++H + +++ ++ +  V TALLD+Y KCG +++
Sbjct: 190 ESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNE 249

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  +F+ M +++ V+W++M+    ++   +E   LFR     G+  N++T + V+ ACA 
Sbjct: 250 ARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACAD 309

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LAA   GK+VH  + + G+    FAAS+LV +Y+KCG    A  VF+ +   ++V W ++
Sbjct: 310 LAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSL 369

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I G++++ +    +  FE + ++G  P+E T++ VLSAC+H G+V+ G  YF  + ++H 
Sbjct: 370 IVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHG 429

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           ++    HY+C+ID+L R+G   EA ++I NMP      +W SLL  CR + N+ELAE AA
Sbjct: 430 LVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAA 489

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------ 482
           K LF +EP+N   ++ LSNIYA    W E  + R  + +  + K+  KSW+EIK      
Sbjct: 490 KALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVF 549

Query: 483 --GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
             G  +HP+I++I+  L +L ++MK+ GY  +T   LHDVE+ +K++ + +HSEKLA+ F
Sbjct: 550 LVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAF 609

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           G++   PG PI++ KNLR C DCH+ MK+ S+I  R+ IVRD NRFH F +GSCSC D+
Sbjct: 610 GIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 171/377 (45%), Gaps = 44/377 (11%)

Query: 103 NTIIGSYTTNGREQEAVALFI--NMLREG-----KTPY-SEFTVSSVLCACAAKRDVFEC 154
           +T +  ++ + R +E + LF   N L+E      + P  S    S+++ AC   R +   
Sbjct: 23  DTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELG 82

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS------------------------ 190
           K++H     +     + +   L+ +YAKCG + DA                         
Sbjct: 83  KRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANV 142

Query: 191 -------RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSV 242
                  ++F+ MP R+  +W+++++G+V    Y EAL LFR  Q       N FT+SS 
Sbjct: 143 GRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSA 202

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + A A +++L +GK++H  L ++G   +    ++L+D+Y KCG + +A  +F  + +K++
Sbjct: 203 LAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDI 262

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V W TMI       R  E   LF  +  +G+ PNE T+  VL+AC+ +   + GK     
Sbjct: 263 VSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGY 322

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M +     P  F  S ++ +  + G    A  +   MP     S W SL+         +
Sbjct: 323 MTRV-GYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVS-WTSLIVGYAQNGQPD 380

Query: 423 LAEIAAKQLF--GMEPD 437
           +A    + L   G +PD
Sbjct: 381 MALQFFESLLRSGTKPD 397



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA   A   GK  H  +  +G +  +  ++ L++ YSKCG    AR+VF++M
Sbjct: 299 TFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQM 358

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC--AAKRDVF 152
           P+  +VSW ++I  Y  NG+   A+  F ++LR G  P  E T   VL AC  A   D+ 
Sbjct: 359 PRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKP-DEITFVGVLSACTHAGLVDI- 416

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
             +  H    K  +         ++D+ A+ G   +A  + ++MP + ++  W+S++ G
Sbjct: 417 GLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGG 475


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/575 (36%), Positives = 335/575 (58%), Gaps = 9/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CAR  A   G+  H +++  G  +D    N LI FY  CG    A  VFDE 
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+WN +I ++   G  ++A  L   M +       E T+ S++ ACA   ++   
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K LH ++ +  +D N+ V  A+LD+Y KC  I  A  VF  + E++ ++W+SM++G  ++
Sbjct: 233 KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKS 292

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             ++EAL LF++ Q+  +E ++ T+  V+ ACA   AL QGK +H ++ K     ++   
Sbjct: 293 GYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLE 352

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG +  A  VF  +  +NV  WN +I G + H    + + LF++M+   L 
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM 412

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++ T+I++L ACSH G+V++G + F  M  +  + P + HY C++D+L RA  + +A  
Sbjct: 413 PDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALA 472

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I NMP  A + +W +LL +CR+  + +LAE   +++  +EPD+ G +++LSN+YA   +
Sbjct: 473 FIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQ 532

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMK- 505
           W+   + RK +++  ++K    SW+E        + G R+H +  +IY+ +E++   +  
Sbjct: 533 WDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNL 592

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             G+ P T + L D+E+  K+  L  HSEKLA+  GL+    G PIRI+KNLR+C DCHS
Sbjct: 593 DGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHS 652

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           F+K  S++  RE + RD +RFHHF  GSCSC DFW
Sbjct: 653 FLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 180/352 (51%), Gaps = 5/352 (1%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFY--SKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           + K  HA ++   L ++ L S+ LI+F   S  G ++ ARK+F +M        NT+I  
Sbjct: 26  KTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRG 85

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           Y  +    EAV+L+  M+  G  P   +T   VL ACA    V   ++ H   LK     
Sbjct: 86  YARSQNPYEAVSLYYFMVERG-VPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGS 144

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           ++FV  AL+  Y  CG    A  VF+    R+ VTW+ M+   +   L E+A  L     
Sbjct: 145 DLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMT 204

Query: 229 VL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
            L  L  ++ T+ S++ ACA L  L +GK +H+   + G   N+   ++++DMY KC  +
Sbjct: 205 KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDI 264

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  VF+ I EK+V+ W +M+SG ++     E + LF+KMQ   +  +E T + VLSAC
Sbjct: 265 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSAC 324

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +  G +++GK Y  L++ +  +  ++   + ++D+  + G I  A  +   M
Sbjct: 325 AQTGALDQGK-YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM 375



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 136/288 (47%), Gaps = 7/288 (2%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           KQ H   L+  +  N    + L+   A    G ++ A ++F  M   +    ++M+ G+ 
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +++   EA+ L+      G+  + +T   V+ ACA L A+  G++ H  + K GFGS++F
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLF 147

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-A 331
             ++L+  Y  CG    A  VF     ++VV WN MI+       S +   L ++M +  
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            L P+E T +S++ AC+ +G +E+GK +     K+  +  N+   + ++D+  +   I  
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGK-FLHSYSKELGLDENLRVNNAILDMYCKCDDIES 266

Query: 392 AYDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPD 437
           A + + N   +     W S+L+      Y    LA     QL  +E D
Sbjct: 267 AQE-VFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELD 313


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/579 (39%), Positives = 346/579 (59%), Gaps = 15/579 (2%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL +TL SCA     + G+  H   + +GL+ D   SN L+  Y++ G  +   KVF  M
Sbjct: 963  TLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLM 1022

Query: 95   PQRCIVSWNTIIGSYT-TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            P+   VSWN++IG+ + +     +AV  F+ M+R G    S  T  ++L A ++      
Sbjct: 1023 PEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMR-GGWGLSRVTFINILSAVSSLSLHEV 1081

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFV 212
              Q+H   LK  +  +  +G ALL  Y KCG +++  ++F  M E R+EV+W+SM++G++
Sbjct: 1082 SHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYI 1141

Query: 213  QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
             NEL  +A+ L       G   + FT ++V+ ACA +A L +G +VHA   +    S++ 
Sbjct: 1142 HNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVV 1201

Query: 273  AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              S+LVDMY+KCG +  A   F  +  +NV  WN+MISG++RH    + + LF +M   G
Sbjct: 1202 VGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDG 1261

Query: 333  LHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
              P+     + VLSACSH+G VE+G  +F  M + + + P V H+SCM+D+LGRAG + E
Sbjct: 1262 QPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDE 1321

Query: 392  AYDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
              D I +MP      +W ++L +C   N RN EL   AA+ L  +EP NA N++LL+N+Y
Sbjct: 1322 VGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMY 1381

Query: 450  AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
            A+  +WE+VA+AR  ++++ VKKE   SWV +K        G + HP    IY KL +L 
Sbjct: 1382 ASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELN 1441

Query: 502  EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
             +M+  GY P+T++ L D+E   K+ELL +HSEK+A+ F ++     +PIRIMKNLR+CG
Sbjct: 1442 RKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCG 1500

Query: 562  DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCHS   + S+I GR+ ++RD NRFHHF +G CSC D+W
Sbjct: 1501 DCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 199/398 (50%), Gaps = 8/398 (2%)

Query: 46   ERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQRCIVSWNT 104
            E    +G+  HA +I  GLN++ +   N L+N Y+K G I+ A  VF+ M ++  VSWN+
Sbjct: 872  EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNS 931

Query: 105  IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
            +I     N   ++A   F+ M R G  P S FT+ S L +CA+   +   +Q+H   LK 
Sbjct: 932  LISGLDQNECSEDAAESFLRMRRTGSMP-SNFTLISTLSSCASLGWIMLGEQIHCDGLKL 990

Query: 165  AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL-YEEALIL 223
             +D +V V  ALL +YA+ G  ++  +VF  MPE ++V+W+S++     +E    +A+  
Sbjct: 991  GLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKY 1050

Query: 224  FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
            F      G   ++ T  +++ A + L+      Q+HA++ K     +    ++L+  Y K
Sbjct: 1051 FLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGK 1110

Query: 284  CGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
            CG + +   +F+ + E ++ V WN+MISG+  +    + M L   M Q G   +  T+ +
Sbjct: 1111 CGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFAT 1170

Query: 343  VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
            VLSAC+ +  +E+G       ++   +  +V   S ++D+  + G I  A      MP  
Sbjct: 1171 VLSACASVATLERGMEVHACGIRA-CMESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 1229

Query: 403  ATASMWGSLLASCRNYRNLE--LAEIAAKQLFGMEPDN 438
               S W S+++    + + E  L       L G  PD+
Sbjct: 1230 NVYS-WNSMISGYARHGHGEKALKLFTRMMLDGQPPDH 1266



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 189/364 (51%), Gaps = 11/364 (3%)

Query: 57   AKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
            A++   G   D    + L++ +++ GL   A+ +F++M  R +VS N ++       ++ 
Sbjct: 779  ARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ-KQG 837

Query: 117  EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-----CKQLHVFALKAAMDRN-V 170
            EA A   + +++     S+  V  VL +  ++  V E      +++H   ++  ++ N V
Sbjct: 838  EAAAKVFHEMKDLVGINSDSYV--VLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKV 895

Query: 171  FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
             +G  L+++YAK G I+DA  VFE M E++ V+W+S+++G  QNE  E+A   F R +  
Sbjct: 896  AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRT 955

Query: 231  GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            G   + FT+ S + +CA L  ++ G+Q+H    K G  +++  +++L+ +YA+ GC  + 
Sbjct: 956  GSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTEC 1015

Query: 291  YFVFSGIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSH 349
              VFS + E + V WN++I   S    SV + +  F +M + G   +  T+I++LSA S 
Sbjct: 1016 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSS 1075

Query: 350  IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            + + E       L++K + +  +    + ++   G+ G ++E   +   M        W 
Sbjct: 1076 LSLHEVSHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 1134

Query: 410  SLLA 413
            S+++
Sbjct: 1135 SMIS 1138



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 23/329 (6%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
           SC  E A    +  H + I  G   +   SN LIN Y + G +  A+K+FDEM  R +V+
Sbjct: 557 SCCSEEA----RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 612

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK---QLH 158
           W  +I  YT NG+  EA A F +M+R G  P + +   S L AC  +     CK   Q+H
Sbjct: 613 WACLISGYTQNGKPDEACARFRDMVRAGFIP-NHYAFGSALRAC-QESGPSGCKLGVQIH 670

Query: 159 VFALKAAMDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
               K     +V V   L+ +Y  C    +DA  VF+ +  RN ++W+S+++ + +    
Sbjct: 671 GLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDX 730

Query: 218 EEALILFRRAQVLGLEY----NQFTISSVI-CACA----GLAALIQGKQVHAVLCKTGFG 268
             A  LF   Q  GL +    N++T  S+I  AC+    GL  L   +Q+ A + K+GF 
Sbjct: 731 VSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVL---EQMLARVEKSGFL 787

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            +++  S+LV  +A+ G   DA  +F  +  +NVV  N ++ G  +  +      +F +M
Sbjct: 788 QDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM 847

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +   +  N  +Y+ +LSA S   ++E+G+
Sbjct: 848 KDL-VGINSDSYVVLLSAFSEFSVLEEGR 875



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 150/299 (50%), Gaps = 16/299 (5%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E ++LH+ ++K     N+F+   L+++Y + G +  A ++F+ M  RN VTW+ +++G+ 
Sbjct: 562 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 621

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSN 270
           QN   +EA   FR     G   N +   S + AC  +G +    G Q+H ++ KT +GS+
Sbjct: 622 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 681

Query: 271 MFAASSLVDMYAKC-GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +   + L+ MY  C     DA  VF  I  +N + WN++IS +SR    V    LF  MQ
Sbjct: 682 VVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQ 741

Query: 330 QAGL----HPNEQTYISVLS-ACSHIGMVEKGKSYFDLM---VKQHNVLPNVFHYSCMID 381
           + GL     PNE T+ S+++ ACS    V+ G    + M   V++   L +++  S ++ 
Sbjct: 742 KEGLGFSFKPNEYTFGSLITAACSS---VDFGLCVLEQMLARVEKSGFLQDLYVGSALVS 798

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI--AAKQLFGMEPDN 438
              R GL  +A ++   M      SM G ++   +  +    A++    K L G+  D+
Sbjct: 799 GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDS 857



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T  S+I    G     + +++H    K GF  N+F +++L+++Y + G +  A  +F  +
Sbjct: 546 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 605

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             +N+V W  +ISG++++ +  E    F  M +AG  PN   + S L AC      E G 
Sbjct: 606 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQ-----ESGP 660

Query: 358 SYFDLMVKQHNVL 370
           S   L V+ H ++
Sbjct: 661 SGCKLGVQIHGLI 673


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 335/555 (60%), Gaps = 31/555 (5%)

Query: 66  NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
            +T++ N L++ Y + G+IS ARKVFD+MP+R +VSW  +I  Y   G  +EA  LF  M
Sbjct: 23  TNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRM 82

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
                  ++      +L        V E +QL  F +    D  V   T ++D     G 
Sbjct: 83  PERNVVSWT-----VMLGGLIEDGRVDEARQL--FDMMPVKD--VVASTNMIDGLCSEGR 133

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQN-------ELYE------EALILFRRAQVLGL 232
           + +A  +F+ MP+RN V W+SM++G   +       ++YE      EAL LF   Q  G+
Sbjct: 134 LIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGV 193

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             +  ++ SV+  C  LA+L  G+QVH+ L ++ F  +++ +S L+ MY KCG +V A  
Sbjct: 194 RPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKR 253

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF     K++V+WN++I+G+++H    + + +F  M  + + P+E T+I VLSACS+ G 
Sbjct: 254 VFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGK 313

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           V++G   F+ M  ++ V P   HY+CM+D+LGRAG ++EA +LI NMP +A A +WG+LL
Sbjct: 314 VKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
            +CR ++NL+LAEIAAK+L  +EP+NAG ++LLSN+Y++  RW++V   RK +R   ++K
Sbjct: 374 GACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRK 433

Query: 473 EKSKSWVEIK---------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
               SW+E+          G  +HP    I  KL KL   +++ GY P+    +HDV++ 
Sbjct: 434 SPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEE 493

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
            K   L  HSEKLA+ +GL+ +  G+PIR+MKNLR+CGD HS +K  +++ GRE I+RD 
Sbjct: 494 EKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDT 553

Query: 584 NRFHHFTNGSCSCWD 598
           NRFHHF +G CSC D
Sbjct: 554 NRFHHFKDGLCSCSD 568



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 133/267 (49%), Gaps = 37/267 (13%)

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           + N      L+  Y + G+IS+A +VF+ MPERN V+W++M+ G+VQ  L EEA +LF R
Sbjct: 22  ETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWR 81

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDMYAKC 284
                 E N      V+     L  LI+  +V     L       ++ A+++++D     
Sbjct: 82  MP----ERN------VVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSE 131

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISG-------------FSRHARSVEVMILFEKMQQA 331
           G +++A  +F  + ++NVV W +MISG             + R    +E + LF  MQ+ 
Sbjct: 132 GRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQRE 191

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIH 390
           G+ P+  + ISVLS C  +  ++ G+     +V+ Q ++  +++  S +I +  + G + 
Sbjct: 192 GVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI--DIYVSSVLITMYIKCGDLV 249

Query: 391 EAYDLILNMPFDATAS----MWGSLLA 413
            A  +     FD  +S    MW S++A
Sbjct: 250 TAKRV-----FDRFSSKDIVMWNSIIA 271



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 3/174 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L  C    +   G+  H++++    + D   S++LI  Y KCG +  A++VFD    +
Sbjct: 202 SVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSK 261

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            IV WN+II  Y  +G  ++A+ +F +M      P  E T   VL AC+    V E  ++
Sbjct: 262 DIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAP-DEITFIGVLSACSYTGKVKEGLEI 320

Query: 158 -HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
                 K  +D        ++D+  + G +++A  + E+MP E + + W +++ 
Sbjct: 321 FESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLG 374



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A  +F  + E N + WN ++SG+ ++    E   +F+KM +     N  ++ +++    
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPER----NVVSWTAMIRGYV 67

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             G++E+ +  F  M ++     NV  ++ M+  L   G + EA  L   MP     +  
Sbjct: 68  QEGLIEEAELLFWRMPER-----NVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAST 122

Query: 409 GSLLASCRNYRNLELAEI 426
             +   C   R +E  EI
Sbjct: 123 NMIDGLCSEGRLIEAREI 140


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/583 (37%), Positives = 341/583 (58%), Gaps = 21/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T   +L++C        G   H   +  G    ++  N  I+ YSKCG I  A +VF++M
Sbjct: 107 TFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKM 166

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN +I  +T  G  ++++ LF  M  +G+ P  EFT +S L AC A   +   
Sbjct: 167 PFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVP-DEFTFTSTLKACGALGAIRGG 225

Query: 155 KQLHVFALKAAMD---RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            Q+H   +        RN+ + +A++D+YAKCG + +A +VF+ + ++N ++WS+++ GF
Sbjct: 226 TQIHASLITRGFPISIRNI-IASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGF 284

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            Q     EA+ LFR+ +      + F +S ++   A LA + QGKQ+H  + K   G ++
Sbjct: 285 AQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDI 344

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             A+S++DMY KCG   +A  +FS ++ +NVV W  MI+G+ +H    + + LF +MQ  
Sbjct: 345 SVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLD 404

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+  +E  Y+++LSACSH G++ + + YF  +   H + PN+ HY+CM+DILGRAG + E
Sbjct: 405 GIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKE 464

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A +LI NM       +W +LL++CR + NLE+     + LF M+ DN  N++++SNIYA 
Sbjct: 465 AKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAE 524

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHP---RIAEIYSKLEKL 500
              W+E  R RKL++   +KKE  +SWVEI         G   HP   +I E+  ++E+ 
Sbjct: 525 AGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERR 584

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC---PGVPIRIMKNL 557
           V+E  ++GY       LHDVE+  K+E L  HSEKLA+   L+C      G  IR+ KNL
Sbjct: 585 VKE--EVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNL 642

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+CGDCH F+K  S+I  +  +VRD NRFH F +G CSC D+W
Sbjct: 643 RVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 219/423 (51%), Gaps = 13/423 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +E   L   L++C++     +G   HA  + MG   D + +N LI+ Y KC  +  A  V
Sbjct: 2   SERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSV 61

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD M +R +VSW  ++  Y   G  + ++AL   M   G  P +EFT S+ L AC A   
Sbjct: 62  FDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKP-NEFTFSTSLKACGALGV 120

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           V    Q+H   +K+  +    VG A +D+Y+KCG I  A +VF  MP RN V+W++M+AG
Sbjct: 121 VENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAG 180

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
                   ++L+LF+R Q  G   ++FT +S + AC  L A+  G Q+HA L   GF  +
Sbjct: 181 HTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPIS 240

Query: 271 M--FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           +    AS++VD+YAKCG + +A  VF  IE+KN++ W+ +I GF++    +E M LF ++
Sbjct: 241 IRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQL 300

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           +++  + +      ++   + + +VE+GK     ++K  + L ++   + +ID+  + GL
Sbjct: 301 RESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGL-DISVANSIIDMYLKCGL 359

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-----QLFGMEPDNAGNHL 443
             EA  L   M      S W  ++     Y    L E A       QL G+E D      
Sbjct: 360 TEEAERLFSEMQVRNVVS-WTVMITG---YGKHGLGEKAIHLFNRMQLDGIELDEVAYLA 415

Query: 444 LLS 446
           LLS
Sbjct: 416 LLS 418


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/548 (39%), Positives = 331/548 (60%), Gaps = 14/548 (2%)

Query: 66  NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
           +D  +++ L++ Y  C     AR+ FDE+P    V    +   Y  N     ++ LF  M
Sbjct: 127 SDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAM 186

Query: 126 L-REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           +  +  +   E        A A   D      LH    K   +RN  V   +LD YAK G
Sbjct: 187 IASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGG 246

Query: 185 L--ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG--LEYNQFTIS 240
              +  A +VF++M ER+ V+W+SM+A + QN +  EA+ L+ +   +G  ++ N   +S
Sbjct: 247 SRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALS 305

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           +V+ ACA   A+  GK++H  + + G   N++  +S+VDMY+KCG V  A   F  I+EK
Sbjct: 306 AVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEK 365

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           N++ W+ MI+G+  H R  E + +F +M+++GL PN  T+ISVL+ACSH G++++G+ ++
Sbjct: 366 NILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWY 425

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
           + M ++  +   V HY CM+D+LGRAG + EAY LI  M     A++WG+LL++CR ++N
Sbjct: 426 NAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKN 485

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           +ELAE++ K+LF ++  N+G ++LLSNIYA  R W++V R R L++   ++K    S  E
Sbjct: 486 VELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFE 545

Query: 481 IKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           +KGK        ++HP+  EIYS LEKL+E M++ GY P T   LHD+++  K+  L  H
Sbjct: 546 LKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIH 605

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ F LM   P   I I+KNLR+C DCH+ MKF ++I  RE I+RDL RFHHF +G
Sbjct: 606 SEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDG 665

Query: 593 SCSCWDFW 600
            CSC D+W
Sbjct: 666 LCSCRDYW 673


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/622 (36%), Positives = 338/622 (54%), Gaps = 78/622 (12%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKC---GLISGARKVFDEMPQRCIVSWNTI------- 105
           H  +  +G       SN LI  Y KC   G+   ARKV DEMP++  ++W TI       
Sbjct: 184 HCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRK 243

Query: 106 ------------------------IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
                                   I  Y  +G   EA  LF  M+ + + P  EFT +S+
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSK-RIPPDEFTFTSL 302

Query: 142 LCACAAKRDVFECKQLH--------VFALKAAMDRN------------------VFVGTA 175
           L ACA        K +H         F  +AA+  N                  +F    
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 176 LLDV---------YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           L DV         Y + G + +A+R+F+ MP ++E++W  MV+G+V   L E+AL LF +
Sbjct: 363 LKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQ 422

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            +   ++   +T +  + AC  L AL  GKQ+HA L + GF ++  A ++L+ MYA+CG 
Sbjct: 423 MRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGA 482

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           V DA  VF  +   + V WN MIS   +H    E + LF++M   G++P+  +++++L+A
Sbjct: 483 VKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTA 542

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           C+H G+V+ G  YF+ M +   + P   HY+ +ID+LGRAG I EA DLI  MPF+ T +
Sbjct: 543 CNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPA 602

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +W ++L+ CR   ++EL   AA QLF M P++ G ++LLSN Y+A  RW + AR RKL+R
Sbjct: 603 IWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMR 662

Query: 467 DSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
           D  VKKE   SW+E+         G   HP   E+Y  LE +  +M+KLGY P+T+  L 
Sbjct: 663 DRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQ 722

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           D+    K+ +L  HSE+LA++FGL+ L  G  + ++KNL+ICGDCH+ M F SR  GRE 
Sbjct: 723 DMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREI 782

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           +VRD+ RFHHF +G CSC ++W
Sbjct: 783 VVRDVRRFHHFKDGECSCGNYW 804



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 192/443 (43%), Gaps = 84/443 (18%)

Query: 74  LINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           L++ Y+  G +  +   FD +P  +R  V  N +I ++        AV++F ++L    +
Sbjct: 95  LVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDS 154

Query: 132 --PYSEFTVSSVLCACAAKRD--VFECKQLHVFALKAAMDRNVFVGTALLDVYAKC---G 184
             P  +++ +S+L A     D  V  C QLH    K      + V  AL+ +Y KC   G
Sbjct: 155 LRP-DDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPG 213

Query: 185 LISDASRVFESMPERNEVTWSS-------------------------------MVAGFVQ 213
           +  DA +V + MPE++E+TW++                               M++G+VQ
Sbjct: 214 VTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQ 273

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           + +  EA  LFRR     +  ++FT +S++ ACA     + GK VH    +        A
Sbjct: 274 SGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEA 333

Query: 274 A----SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT---------------------- 307
           A    ++LV +Y+K G +  A  +F  +  K+VV WNT                      
Sbjct: 334 ALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMP 393

Query: 308 ---------MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
                    M+SG+     + + + LF +M+   + P + TY   ++AC  +G ++ GK 
Sbjct: 394 YKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQ 453

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
               +V+      N    + ++ +  R G + +A  + L MP +  +  W +++++   +
Sbjct: 454 LHAHLVQCGFEASNSAG-NALLTMYARCGAVKDARLVFLVMP-NVDSVSWNAMISALGQH 511

Query: 419 RN----LELAEIAAKQLFGMEPD 437
            +    LEL +    Q  G+ PD
Sbjct: 512 GHGREALELFDQMVAQ--GIYPD 532



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 126/263 (47%), Gaps = 4/263 (1%)

Query: 52  GKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           GK+  A KI       D ++ N +++ Y + G +  A ++F EMP +  +SW  ++  Y 
Sbjct: 349 GKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYV 408

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
             G  ++A+ LF  M  E   P  ++T +  + AC     +   KQLH   ++   + + 
Sbjct: 409 HGGLAEDALKLFNQMRSEDVKP-CDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASN 467

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
             G ALL +YA+CG + DA  VF  MP  + V+W++M++   Q+    EAL LF +    
Sbjct: 468 SAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQ 527

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVD 289
           G+  ++ +  +++ AC     +  G Q    + +  G        + L+D+  + G + +
Sbjct: 528 GIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGE 587

Query: 290 AYFVFSGIE-EKNVVLWNTMISG 311
           A  +   +  E    +W  ++SG
Sbjct: 588 ARDLIKTMPFEPTPAIWEAILSG 610



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 44/290 (15%)

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILF 224
           D      T+L+  YA  G + D++  F+S+P   R+ V  ++M++ F +  L   A+ +F
Sbjct: 86  DPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVF 145

Query: 225 RR--AQVLGLEYNQFTISSVICACAGL--AALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           R   A    L  + ++ +S++ A   +   A+    Q+H  + K G G+ +  +++L+ +
Sbjct: 146 RSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIAL 205

Query: 281 YAKC---GCVVDAYFVFSGIEEKNV-------------------------------VLWN 306
           Y KC   G   DA  V   + EK+                                V+WN
Sbjct: 206 YMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWN 265

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK- 365
            MISG+ +     E   LF +M    + P+E T+ S+LSAC++ G    GKS     ++ 
Sbjct: 266 AMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRL 325

Query: 366 QHNVLPN--VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           Q + +P   +   + ++ +  ++G I  A  +  +M      S W ++L+
Sbjct: 326 QPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVS-WNTILS 374



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    + +C    A   GK  HA ++  G        N L+  Y++CG +  AR VF  M
Sbjct: 434 TYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVM 493

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P    VSWN +I +   +G  +EA+ LF  M+ +G  P    +  ++L AC     V + 
Sbjct: 494 PNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYP-DRISFLTILTACNHAGLVDDG 552

Query: 155 KQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
                F    +M+R+  +         L+D+  + G I +A  + ++MP E     W ++
Sbjct: 553 -----FQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAI 607

Query: 208 VAG 210
           ++G
Sbjct: 608 LSG 610


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/581 (38%), Positives = 341/581 (58%), Gaps = 10/581 (1%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           N  +  T  + L+ CA       GKV H +++   L++D      L+N Y+ CG +  AR
Sbjct: 75  NVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSAR 134

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            +F+ M  R  V W ++I  Y  N    EA+ L+  M  +G +P  E T+++++ ACA  
Sbjct: 135 FLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSP-DEVTMATLVSACAEL 193

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           +D+    +LH    +  M     +G+AL+++YAKCG +  A +VF+ + +++   WS+++
Sbjct: 194 KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALI 253

Query: 209 AGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            G+V+N    EAL LFR  A    +  N+ TI +VI ACA L  L  G+ VH  + +T  
Sbjct: 254 FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK 313

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
           G ++   +SL+DM++KCG +  A  +F  +  K+++ WN+M++GF+ H    E +  F  
Sbjct: 314 GHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRL 373

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQ   L P+E T+I VL+ACSH G+V++GK  F  +   + V     HY CM+D+L RAG
Sbjct: 374 MQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAG 433

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
           L+ EA + I  MP     ++WGS+L +CR Y NLEL E AA+ L  +EP N G ++LLSN
Sbjct: 434 LLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSN 493

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEK 499
           IYA  + W EV + R+L+ +  ++K    S V I         G  +HP IAEI   L +
Sbjct: 494 IYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQ 553

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           + E++K  GY  +T   L +++D++K+E +  HSEKLAL +GL+    G  I I+KNLR+
Sbjct: 554 VREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRV 613

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCH+ +K  S+I  R+  +RD NRFHHF +GSCSC D+W
Sbjct: 614 CSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 190/357 (53%), Gaps = 11/357 (3%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  VF    +  +++WN+++ ++  +   + A+  +  ML   +     FT  S+L  CA
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              +    K LH   +K  +  ++++ T LL++YA CG +  A  +FE M  RN+V W+S
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M++G+++N    EAL+L+++ +  G   ++ T+++++ ACA L  L  G ++H+ + +  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
                   S+LV+MYAKCG +  A  VF  + +K+V  W+ +I G+ ++ RS E + LF 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 327 KMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV---KQHNVLPNVFHYSCMIDI 382
           ++   + + PNE T ++V+SAC+ +G +E G+   D +    K H+V  N    + +ID+
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN----NSLIDM 326

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPD 437
             + G I  A  +  +M +    S W S++   +        LA+    Q   ++PD
Sbjct: 327 FSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGFALHGLGREALAQFRLMQTTDLQPD 382


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/509 (40%), Positives = 316/509 (62%), Gaps = 9/509 (1%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWN++I      G E++A++ F  M R       E+T+ SVL + A+ + +     +H 
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKM-RSRDMKIDEYTLPSVLNSFASMKVMQNAISVHC 65

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +K   +    V  AL+D+YAK G +  A  VF  M +++ V+W+S+V G+  N  YEE
Sbjct: 66  LIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEE 125

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ LF + ++ G+  +Q  ++SV+ ACA L  +  G+Q+HA L K+G  S++   +SLV 
Sbjct: 126 AIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVT 185

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYAKCG +VDA   F  +  ++V+ W  +I G++++ R    +  +++M   G  P+  T
Sbjct: 186 MYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYIT 245

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +I +L ACSH G++  G++YF+ M K + + P   HY+CMID+LGR+G + EA  L+  M
Sbjct: 246 FIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQM 305

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
                A +W +LLA+CR ++ LEL E+AAK LF +EP N+  +++LSN+Y+A  +WE+ A
Sbjct: 306 VVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAA 365

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           R R+L+R   + KE   SW+E   K        RNHP   EIYSK+++++  +K+ GY P
Sbjct: 366 RIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVP 425

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +    LHD +D  K+  L +HSEKLA+ FGL+ +  G PIRI KNLR+CGDCH+ MK+ S
Sbjct: 426 DMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTS 485

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++  R  I+RD N FHHFT G CSC D+W
Sbjct: 486 KVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 143/283 (50%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L S A  +        H  II  G     L +N LI+ Y+K G +  A  VF +M
Sbjct: 43  TLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKM 102

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW +++  Y+ NG  +EA+ LF  M   G  P  +  V+SVL ACA    +   
Sbjct: 103 VDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYP-DQIAVASVLSACAELTVMDFG 161

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H   +K+ ++ ++ V  +L+ +YAKCG I DA+R F++MP R+ ++W++++ G+ QN
Sbjct: 162 QQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQN 221

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
              + +L  + +    G + +  T   ++ AC+    L  G+     + K  G       
Sbjct: 222 GRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEH 281

Query: 274 ASSLVDMYAKCGCVVDAYFVFSG-IEEKNVVLWNTMISGFSRH 315
            + ++D+  + G + +A  + +  +   + V+W  +++    H
Sbjct: 282 YACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 131/239 (54%), Gaps = 2/239 (0%)

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           +EV+W+S++ G V+    E+AL  F++ +   ++ +++T+ SV+ + A +  +     VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            ++ KTGF +     ++L+DMYAK G +  A  VFS + +K+VV W ++++G+S +    
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LF KM+ +G++P++    SVLSAC+ + +++ G+     +VK   +  ++   + +
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLESSLSVDNSL 183

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL-FGMEPD 437
           + +  + G I +A     NMP     S    ++   +N R     +   + +  G +PD
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPD 242


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 342/583 (58%), Gaps = 16/583 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+    +++C+       GK  H +    G  +D   S+ LI  YS CG +  ARKVFDE
Sbjct: 77  SSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINML-REGKTPYSEFTVS----SVLCACAAK 148
           +P+R IVSW ++I  Y  NG   +AV+LF ++L  E     + F  S    SV+ AC+  
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRV 196

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSS 206
                 + +H F +K   DR V VG  LLD YAK G   ++ A ++F+ + +++ V+++S
Sbjct: 197 AAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 207 MVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +++ + Q+ +  EA  +FRR  +   + +N  T+S+V+ A +   AL  GK +H  + + 
Sbjct: 257 IMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   ++   +S++DMY KCG V  A   F  ++ KNV  W  MI+G+  H  + + + LF
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             M  +G+ PN  T++SVL+ACSH G+ + G  +F+ M  +  V P + HY CM+D+LGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGR 436

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           AG + +AYDLI  M  +  + +W SLLA+CR ++N+ELAEI+  +LF ++P N G ++LL
Sbjct: 437 AGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLL 496

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
           S+IYA + RW++V R R  +++  + K    S +E+ G+          HP+  +IY  L
Sbjct: 497 SHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
            +L  ++ + GY   T    HDV++  K+  L  HSEKLA+ FG+M   PG  + ++KNL
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCH+ +K  S+I  RE +VRD  RFHHF +G CSC D+W
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 39/245 (15%)

Query: 190 SRVFESMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           + +F    ++ +V +W+S++A   ++    EAL  F   + L L   + +    I AC+ 
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L  +  GKQ H      G+ S++F +S+L+ MY+ CG + DA  VF  I ++N+V W +M
Sbjct: 89  LLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148

Query: 309 ISGFSRHARSVEVMILFEKM------QQAGLHPNEQTYISVLSACSHI---GMVEKGKSY 359
           I G+  +  +++ + LF+ +        A +  +    +SV+SACS +   G+ E   S+
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSF 208

Query: 360 -----FDLMVKQHNVLPNVF------------------------HYSCMIDILGRAGLIH 390
                FD  V   N L + +                         Y+ ++ +  ++G+ +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 391 EAYDL 395
           EA+D+
Sbjct: 269 EAFDV 273


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/553 (39%), Positives = 337/553 (60%), Gaps = 22/553 (3%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDE------MPQRCIVSWNTIIGSYTTNGREQE 117
           LNN TL    LI  +S C  +  AR+VF++      +P+     W  +   Y+ NG  +E
Sbjct: 106 LNNPTLKGK-LITLFSVCRRVDEARRVFEDGGEDVDLPESV---WVAMGIGYSRNGYPKE 161

Query: 118 AVALFINMLRE-GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           A+ L+  M+ + G+     F  S  L AC+   D+   + +H   LKA  D +  V  AL
Sbjct: 162 ALLLYYEMVCQFGQ--LGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNAL 219

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           L +Y++ G   +A RVF+ MP RN V+W+S++AG V+ +   EA+  FR  Q  G+ ++ 
Sbjct: 220 LRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSW 279

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            T+++++  CA + AL  GK++HAV+ K+    +    +SLVDMYAKCG +     VF+G
Sbjct: 280 VTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNG 339

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           ++ K++  WNT+I+G++ + R  E M  F++M  +G  P+  T+I++LS CSH G+ + G
Sbjct: 340 MQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDG 399

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
              F++M   + + P V HY+C++D+LGRAG I EA +++ NMPF  T S+WGSLL SCR
Sbjct: 400 CRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCR 459

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
            + N+ LAE  AK+LF +EP+NAGN+++LSNIYA    WE V   R+ +    + KE   
Sbjct: 460 LHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGC 519

Query: 477 SWVEIK--------GKRNHPRIAEIYSKL-EKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
           SW++IK        G  N  R +  Y K+ ++L+E M+++GY P+T   LHDV +  +  
Sbjct: 520 SWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAM 579

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
            +  HSE+LA  F L+    G+PIRI KNLR+C DCHS++K  S++ GR  ++RD NRFH
Sbjct: 580 WVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFH 639

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 640 HFKDGVCSCKDYW 652


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 337/576 (58%), Gaps = 11/576 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C        GK+ H  ++ +GL ++ +  N LI FY KC  ++ A+KVF  M
Sbjct: 364 TFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRM 423

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF-TVSSVLCACAAKRDVFE 153
           P+   V+WN +IG +  N    EAVA F  ++REG T   ++ T+ ++L +C    D+ +
Sbjct: 424 PKLDKVTWNALIGGFANNAELNEAVAAF-KLMREGSTSGVDYITIVNILGSCLTHEDLIK 482

Query: 154 CK-QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
               +H   +    D +  V ++L+ +YAKCG +  +S +F+ +  +    W++++A   
Sbjct: 483 YGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANA 542

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +    EEAL L  R +  G+E++QF  S+ +   A LA L +G+Q+H    K GF  + F
Sbjct: 543 RYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHF 602

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++ +DMY KCG + DA  +     +++ + WNT+IS  +RH +  +    F  M + G
Sbjct: 603 IINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLG 662

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  +++ +LSACSH G+V++G +Y+  M   + + P + H  CMID+LGR+G + EA
Sbjct: 663 VKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEA 722

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
              I  MP      +W SLLASCR YRNL+L   AAK L  ++P +   ++L SN++A  
Sbjct: 723 EAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATI 782

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            RWE+V   R  +   +++K+ + SWV+ KG         + HP++ +I  KL  L++ +
Sbjct: 783 GRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLMKIV 842

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
            + GY P+T + L D ++ +K+  +  HSE++AL FGL+ +  G  +RI KNLR+CGDCH
Sbjct: 843 GEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRVCGDCH 902

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           SF KF S + GR+ ++RD  RFHHFTNG+CSC D+W
Sbjct: 903 SFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 207/419 (49%), Gaps = 11/419 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL   L  C        GK  H   +  GL ++    N L++ YS  G    A  +F  
Sbjct: 262 TTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRR 321

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R ++SWN+++  Y  +GR   A+ +F  ML   K   +  T +S L AC        
Sbjct: 322 MPERDLISWNSMLACYVQDGRCLCALKVFAEMLWM-KKEINYVTFTSALAACLDPEFFTN 380

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K LH F +   +   + +G  L+  Y KC  +++A +VF+ MP+ ++VTW++++ GF  
Sbjct: 381 GKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFAN 440

Query: 214 NELYEEALILF---RRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGS 269
           N    EA+  F   R     G++Y   TI +++ +C     LI+ G  +HA    TGF  
Sbjct: 441 NAELNEAVAAFKLMREGSTSGVDY--ITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDL 498

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +    SSL+ MYAKCG +  + ++F  +  K   +WN +I+  +R+    E + L  +M+
Sbjct: 499 DQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMR 558

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            AG+  ++  + + LS  + + M+E+G+      +K    L + F  +  +D+ G+ G +
Sbjct: 559 SAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDH-FIINAAMDMYGKCGEL 617

Query: 390 HEAYDLILNMPFDATASMWGSLLA-SCRNYRNLELAEIAAKQL-FGMEPDNAGNHLLLS 446
            +A   IL  P D +   W +L++ S R+ +  +  E     L  G++P++     LLS
Sbjct: 618 DDALR-ILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLS 675



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 203/410 (49%), Gaps = 14/410 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H   I  GL  D       ++FY+  G++S A+K+F+EMP R +VSW +++ SY+ NG +
Sbjct: 82  HGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSK 141

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +E +  +  M  EG    +E  ++ V+ +C    D+    QL   ALK  ++  V    +
Sbjct: 142 KEVINTYKRMRHEG-ICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAANS 200

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ ++  CG I++A  +F  M ER+ ++W+S+++   QN L+EE+   F   +++  E N
Sbjct: 201 LIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEIN 260

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+S ++  C  +  L  GK VH +  K G  SN+   ++L+ +Y+  G   DA  +F 
Sbjct: 261 YTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFR 320

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            + E++++ WN+M++ + +  R +  + +F +M       N  T+ S L+AC        
Sbjct: 321 RMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTN 380

Query: 356 GKSYFDLMV----KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           GK     +V    +   ++ N      +I   G+   + EA  +   MP       W +L
Sbjct: 381 GKILHGFVVVLGLQDELIIGNT-----LITFYGKCHKMAEAKKVFQRMP-KLDKVTWNAL 434

Query: 412 LASCRNYRNLELAE-IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460
           +    N  N EL E +AA +L      +  +++ + NI  +    E++ +
Sbjct: 435 IGGFAN--NAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIK 482



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 177/338 (52%), Gaps = 6/338 (1%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           YSK G I+ A+ VFD M +R   SWN ++  Y   G   EAV  F ++   G  P S F 
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKP-SGFM 60

Query: 138 VSSVLCACAAKRDVF--ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           ++S++ AC  K  +   E  Q H FA+K  +  +VFVGT+ +  YA  G++S+A ++F  
Sbjct: 61  IASLVTACN-KSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNE 119

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MP+RN V+W+S++  +  N   +E +  ++R +  G+  N+  I+ VI +C  L  +I G
Sbjct: 120 MPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILG 179

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
            Q+     K G  + + AA+SL+ M+  CG + +A  +F+ + E++ + WN++IS  +++
Sbjct: 180 HQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQN 239

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               E    F  M+      N  T   +LS C  +  ++ GK    L VK + +  N+  
Sbjct: 240 TLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVK-YGLESNICL 298

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            + ++ +   AG   +A  +   MP     S W S+LA
Sbjct: 299 CNTLLSVYSDAGRSKDAELIFRRMPERDLIS-WNSMLA 335



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 183/386 (47%), Gaps = 13/386 (3%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + SC      + G       +  GL      +N LI  +  CG I+ A  +F+EM +R 
Sbjct: 166 VISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERD 225

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
            +SWN+II +   N   +E+   F + +R      +  T+S +L  C +   +   K +H
Sbjct: 226 TISWNSIISANAQNTLHEESFRYF-HWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVH 284

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             A+K  ++ N+ +   LL VY+  G   DA  +F  MPER+ ++W+SM+A +VQ+    
Sbjct: 285 GLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCL 344

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
            AL +F     +  E N  T +S + AC        GK +H  +   G    +   ++L+
Sbjct: 345 CALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLI 404

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
             Y KC  + +A  VF  + + + V WN +I GF+ +A   E +  F+ M++      + 
Sbjct: 405 TFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDY 464

Query: 339 -TYISVLSAC-SHIGMVEKGKSYFDLMVKQHNVLP----NVFHYSCMIDILGRAGLIHEA 392
            T +++L +C +H  +++ G     + +  H V+     +    S +I +  + G +H +
Sbjct: 465 ITIVNILGSCLTHEDLIKYG-----IPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSS 519

Query: 393 YDLILNMPFDATASMWGSLLASCRNY 418
             +   + F  T+S+W +++A+   Y
Sbjct: 520 SYIFDQLVF-KTSSVWNAIIAANARY 544



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 126/237 (53%), Gaps = 3/237 (1%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+K G I+ A  VF+ M ERNE +W+ M++G+V+   Y EA++ FR    +G++ + F 
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 239 ISSVICACAGLAALI-QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           I+S++ AC   + +  +G Q H    K G   ++F  +S V  YA  G V +A  +F+ +
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            ++NVV W +++  +S +    EV+  +++M+  G+  NE     V+S+C  +  +  G 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
                 +K   +   V   + +I + G  G I+EA  +   M    T S W S++++
Sbjct: 181 QLLGHALK-FGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTIS-WNSIISA 235


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/618 (36%), Positives = 343/618 (55%), Gaps = 46/618 (7%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           N    +   + + L +C++ +    GK  H   +  G+  D      L+N Y+ C  +  
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVRE 396

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A+ VFD MP R +V+WN++   Y   G  Q+ + +F  M+  G  P    T+ S+L AC+
Sbjct: 397 AQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKP-DLVTMLSILHACS 455

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER------- 199
             +D+   K +H FA++  M  +VFV  ALL +YAKC  + +A  VF+ +P R       
Sbjct: 456 DLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNG 515

Query: 200 ----------------------------NEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
                                       +E+TWS ++ G V+N   EEA+ +FR+ Q +G
Sbjct: 516 ILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMG 575

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            + ++ TI S++ AC+    L  GK++H  + +     ++   ++LVDMYAKCG +  + 
Sbjct: 576 FKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSR 635

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  +  K+V  WNTMI     H    E + LFEKM  + + P+  T+  VLSACSH  
Sbjct: 636 NVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSM 695

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+G   F+ M + H V P   HY+C++DI  RAG + EAY  I  MP + TA  W + 
Sbjct: 696 LVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAF 755

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           LA CR Y+N+ELA+I+AK+LF ++P+ + N++ L NI    + W E ++ RKL+++  + 
Sbjct: 756 LAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGIT 815

Query: 472 KEKSKSWVEIKGKRNHPRIA---------EIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           K    SW  + G R H  +A         +IY+ L++L  ++K  GYKP+T++ LHD++ 
Sbjct: 816 KTPGCSWFHV-GNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQ 874

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K E L +HSEKLA+ FG++ L     IR+ KNLRICGDCH+ +K+ S + G   +VRD
Sbjct: 875 EEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRD 934

Query: 583 LNRFHHFTNGSCSCWDFW 600
             RFHHF NG+CSC DFW
Sbjct: 935 SLRFHHFKNGNCSCKDFW 952



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 235/478 (49%), Gaps = 41/478 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  C+  +    GK  H  ++  G+  D   S+  +NFY+KC  +  A+ VFD M
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WN++   Y   G  Q+ + +F  M+ +G  P    TVS +L AC+  +D+   
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKP-DPVTVSCILSACSDLQDLKSG 261

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H FALK  M  NVFV  AL+++Y  C  + +A  VF+ MP RN +TW+S+ + +V  
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNC 321

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              ++ L +FR   + G++ +   +SS++ AC+ L  L  GK +H    K G   ++F  
Sbjct: 322 GFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVC 381

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV++YA C CV +A  VF  +  +NVV WN++ S +       + + +F +M   G+ 
Sbjct: 382 TALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVK 441

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T +S+L ACS +  ++ GK      V+ H ++ +VF  + ++ +  +   + EA  
Sbjct: 442 PDLVTMLSILHACSDLQDLKSGKVIHGFAVR-HGMVEDVFVCNALLSLYAKCVCVREAQV 500

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           +   +P    AS W  +L +                                  Y  N+ 
Sbjct: 501 VFDLIPHREVAS-WNGILTA----------------------------------YFTNKE 525

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
           +E+       +   EVK ++    V I G   + RI E      ++  +M+ +G+KP+
Sbjct: 526 YEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAM----EIFRKMQTMGFKPD 579



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 206/394 (52%), Gaps = 4/394 (1%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
            S+ A     +     A  ++CA  R  ++ K  H      G+ +D    N  I+ Y KC
Sbjct: 29  TSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKC 88

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
             + GAR+VFD++  R +V+WN++   Y   G  Q+ + +F  M    K   +  TVSS+
Sbjct: 89  KCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM-GLNKVKANPLTVSSI 147

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L  C+  +D+   K++H F ++  M  +VFV +A ++ YAKC  + +A  VF+ MP R+ 
Sbjct: 148 LPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDV 207

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           VTW+S+ + +V     ++ L +FR   + G++ +  T+S ++ AC+ L  L  GK +H  
Sbjct: 208 VTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGF 267

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
             K G   N+F +++LV++Y  C CV +A  VF  +  +NV+ WN++ S +       + 
Sbjct: 268 ALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKG 327

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           + +F +M   G+ P+     S+L ACS +  ++ GK+     VK H ++ +VF  + +++
Sbjct: 328 LNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVK-HGMVEDVFVCTALVN 386

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           +      + EA  +   MP     + W S L+SC
Sbjct: 387 LYANCLCVREAQTVFDLMPHRNVVT-WNS-LSSC 418



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 108/238 (45%), Gaps = 6/238 (2%)

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           + + L  EA+ ++  ++  G++ ++    +V  ACA     ++ KQ H    + G  S++
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDV 75

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++ +  Y KC CV  A  VF  +  ++VV WN++ + +       + + +F KM   
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLN 135

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            +  N  T  S+L  CS +  ++ GK     +V+ H ++ +VF  S  ++   +   + E
Sbjct: 136 KVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVR-HGMVEDVFVSSAFVNFYAKCLCVRE 194

Query: 392 AYDLILNMPFDATASMWGSLLASCR---NYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           A  +   MP     + W S L+SC     +    L       L G++PD      +LS
Sbjct: 195 AQTVFDLMPHRDVVT-WNS-LSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILS 250


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/553 (37%), Positives = 335/553 (60%), Gaps = 9/553 (1%)

Query: 56   HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
            HA  +  G+  D+  S  LI+ YSK G +  A  +F       + SWN ++  Y  +G  
Sbjct: 1031 HACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDF 1090

Query: 116  QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             +A+ L+I M   G+   ++ T+++   A      + + KQ+    +K   + ++FV + 
Sbjct: 1091 PKALRLYILMQESGERA-NQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISG 1149

Query: 176  LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
            +LD+Y KCG +  A R+F  +P  ++V W++M++G V+N   E AL  +   ++  ++ +
Sbjct: 1150 VLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPD 1209

Query: 236  QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            ++T ++++ AC+ L AL QG+Q+HA   K     + F  +SLVDMYAKCG + DA  +F 
Sbjct: 1210 EYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFK 1269

Query: 296  GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
                  +  WN MI G ++H  + E +  FE+M+  G+ P+  T+I VLSACSH G+V +
Sbjct: 1270 RTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSE 1329

Query: 356  GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
                F  M K + + P + HYSC++D L RAG I EA  +I +MPF+A+ASM+ +LL +C
Sbjct: 1330 AYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNAC 1389

Query: 416  RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
            R   + E  +  A++L  +EP ++  ++LLSN+YAA  +WE VA AR ++R + VKK+  
Sbjct: 1390 RVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPG 1449

Query: 476  KSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
             SWV++K        G R+H     IY+K+E +++ +++ GY P+T+  L DVE+  K+ 
Sbjct: 1450 FSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKEC 1509

Query: 528  LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
             L +HSEKLA+ +GLM   P   +R++KNLR+CGDCH+ +K+ S++  RE ++RD NRFH
Sbjct: 1510 SLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFH 1569

Query: 588  HFTNGSCSCWDFW 600
            HF +G CSC D+W
Sbjct: 1570 HFRSGVCSCGDYW 1582



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/393 (32%), Positives = 208/393 (52%), Gaps = 14/393 (3%)

Query: 52   GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            GK  H  ++  GL+      N LIN Y K G +S AR VF +M +  +VSWNT+I     
Sbjct: 925  GKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCAL 984

Query: 112  NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA-KRDVFECKQLHVFALKAAMDRNV 170
            +G E+ +V +F+++LR G  P  +FTV+SVL AC++         Q+H  A+KA +  + 
Sbjct: 985  SGLEECSVGMFVDLLRGGLLP-DQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDS 1043

Query: 171  FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            FV T L+DVY+K G + +A  +F +    +  +W++M+ G++ +  + +AL L+   Q  
Sbjct: 1044 FVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQES 1103

Query: 231  GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            G   NQ T+++   A  GL  L QGKQ+ AV+ K GF  ++F  S ++DMY KCG +  A
Sbjct: 1104 GERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESA 1163

Query: 291  YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
              +F+ I   + V W TMISG   + +    +  +  M+ + + P+E T+ +++ ACS +
Sbjct: 1164 RRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLL 1223

Query: 351  GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
              +E+G+      VK  N   + F  + ++D+  + G I +A  L         AS W +
Sbjct: 1224 TALEQGRQIHANTVKL-NCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIAS-WNA 1281

Query: 411  LLASCRNYRNLELAEIAAKQLF------GMEPD 437
            ++     + N E     A Q F      G+ PD
Sbjct: 1282 MIVGLAQHGNAE----EALQFFEEMKSRGVTPD 1310



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 172/381 (45%), Gaps = 31/381 (8%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL    + C    +P   +  H   + +GL  D   +  L+N Y+K G I  AR +FD M
Sbjct: 729  TLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGM 788

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
              R +V WN ++ +Y   G E EA+ LF    R G  P  + T+ ++     +K++V E 
Sbjct: 789  GLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRP-DDVTLCTLARVVKSKQNVLEW 847

Query: 154  -CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              KQL  +  K  M  +   G+   DV                      + W+  ++ F+
Sbjct: 848  QLKQLKAYGTKLFMYDDDDDGS---DV----------------------IAWNKTLSWFL 882

Query: 213  QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            Q     EA+  F       +  +  T   ++   AGL  L  GKQ+H ++ ++G    + 
Sbjct: 883  QRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVS 942

Query: 273  AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              + L++MY K G V  A  VF  + E ++V WNTMISG +        + +F  + + G
Sbjct: 943  VGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGG 1002

Query: 333  LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            L P++ T  SVL ACS +G      +       +  V+ + F  + +ID+  ++G + EA
Sbjct: 1003 LLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEA 1062

Query: 393  YDLILNMP-FDATASMWGSLL 412
              L +N   FD  +  W +++
Sbjct: 1063 EFLFVNQDGFDLAS--WNAMM 1081



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 170/369 (46%), Gaps = 36/369 (9%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSY 109
           GK  HA+I+  G + D   +N LI  YSKCG +S ARK+FD  P   R +V+WN I+ ++
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
               R+     LF  +LR      +  T++ V   C         + LH +A+K  +  +
Sbjct: 705 ADKARD--GFHLF-RLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWD 761

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           VFV  AL+++YAK G I +A  +F+ M  R+ V W+ M+  +V   L  EAL+LF     
Sbjct: 762 VFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNR 821

Query: 230 LGLEYNQFTISSVICACAGLAALI--QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
            GL  +  T+ ++         ++  Q KQ+ A      +G+ +F       MY      
Sbjct: 822 TGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKA------YGTKLF-------MYDDDDDG 868

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            D            V+ WN  +S F +   + E +  F  M  + +  +  T++ +LS  
Sbjct: 869 SD------------VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVV 916

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           + +  +E GK    ++V+    L  V    +C+I++  + G +  A  +   M  +    
Sbjct: 917 AGLNCLELGKQIHGIVVRSG--LDQVVSVGNCLINMYVKTGSVSRARTVFWQMN-EVDLV 973

Query: 407 MWGSLLASC 415
            W ++++ C
Sbjct: 974 SWNTMISGC 982



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 143/280 (51%), Gaps = 7/280 (2%)

Query: 37   QATLQSCARERAPV----RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
            Q TL + A+    +    +GK   A ++  G N D    + +++ Y KCG +  AR++F+
Sbjct: 1109 QITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFN 1168

Query: 93   EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            E+P    V+W T+I     NG+E+ A+  + +M R  K    E+T ++++ AC+    + 
Sbjct: 1169 EIPSPDDVAWTTMISGCVENGQEEHALFTYHHM-RLSKVQPDEYTFATLVKACSLLTALE 1227

Query: 153  ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
            + +Q+H   +K     + FV T+L+D+YAKCG I DA  +F+        +W++M+ G  
Sbjct: 1228 QGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLA 1287

Query: 213  QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNM 271
            Q+   EEAL  F   +  G+  ++ T   V+ AC+    + +  +    + K  G    +
Sbjct: 1288 QHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEI 1347

Query: 272  FAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMIS 310
               S LVD  ++ G + +A  V S +  E +  ++ T+++
Sbjct: 1348 EHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLN 1387



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE- 198
           S+L    A  D+   K+ H   L +    + F+   L+ +Y+KCG +S A ++F++ P+ 
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 199 -RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
            R+ VTW+++++         +   LFR  +   +   + T++ V   C   A+    + 
Sbjct: 691 SRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           +H    K G   ++F A +LV++YAK G + +A  +F G+  ++VVLWN M+  +     
Sbjct: 749 LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
             E ++LF +  + GL P++ T       C+   +V+  ++  +  +KQ
Sbjct: 809 EYEALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQNVLEWQLKQ 851



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T    +++C+   A  +G+  HA  + +    D      L++ Y+KCG I  AR +F   
Sbjct: 1212 TFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT 1271

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                I SWN +I     +G  +EA+  F  M   G TP    T   VL AC+    V E 
Sbjct: 1272 NTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTP-DRVTFIGVLSACSHSGLVSEA 1330

Query: 155  KQLHVFALKA--AMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
             + + ++++    ++  +   + L+D  ++ G I +A +V  SMP
Sbjct: 1331 YE-NFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMP 1374


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/599 (36%), Positives = 345/599 (57%), Gaps = 11/599 (1%)

Query: 12  YYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS 71
           Y +S ++    + S    A +  T+ + L +C       RG   H+  I  GL ++   S
Sbjct: 226 YCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS 285

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N LI+ Y++ G +   +KVFD M  R ++SWN+II +Y  N +   A++LF  M R  + 
Sbjct: 286 NKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM-RLSRI 344

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFAL-KAAMDRNVFVGTALLDVYAKCGLISDAS 190
                T+ S+    +   D+  C+ +  F L K     ++ +G A++ +YAK GL+  A 
Sbjct: 345 QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGL 249
            VF  +P  + ++W+++++G+ QN    EA+ ++   +  G +  NQ T  SV+ AC+  
Sbjct: 405 AVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQA 464

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
            AL QG ++H  L K G   ++F  +SL DMY KCG + DA  +F  I   N V WNT+I
Sbjct: 465 GALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 524

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           +    H    + ++LF++M   G+ P+  T++++LSACSH G+V++G+  F++M   + +
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 584

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK 429
            P++ HY CM+D+ GRAG +  A   I +M     AS+WG+LL++CR + N++L +IA++
Sbjct: 585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644

Query: 430 QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------- 482
            LF +EP++ G H+LLSN+YA+  +WE V   R +     ++K    S +E+        
Sbjct: 645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFY 704

Query: 483 -GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFG 541
            G + HP   E+Y +L  L  ++K +GY P+    L DVED  K+ +L+ HSE+LA+ F 
Sbjct: 705 TGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFA 764

Query: 542 LMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           L+       IRI KNLR+CGDCHS  KF S+I  RE IVRD NRFHHF NG CSC D+W
Sbjct: 765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 213/416 (51%), Gaps = 14/416 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++C   R  + G   H   +  G   D   +  LI+ YS+   +  AR +FDEM
Sbjct: 155 TFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R + SWN +I  Y  +G  +EA+      L  G       TV S+L AC    D    
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLLSACTEAGDFNRG 266

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H +++K  ++  +FV   L+D+YA+ G + D  +VF+ M  R+ ++W+S++  +  N
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFA 273
           E    A+ LF+  ++  ++ +  T+ S+    + L  +   + V     + G F  ++  
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI 386

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG- 332
            +++V MYAK G V  A  VF+ +   +V+ WNT+ISG++++  + E + ++  M++ G 
Sbjct: 387 GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGE 446

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  N+ T++SVL ACS  G + +G      ++K + +  +VF  + + D+ G+ G + +A
Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTSLADMYGKCGRLEDA 505

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLS 446
             L   +P    +  W +L+A    + + E A +  K++   G++PD+     LLS
Sbjct: 506 LSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 200/401 (49%), Gaps = 14/401 (3%)

Query: 15  SFSSSAIASASANANAT-ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           S S++A+     N N + E+  +    + C   ++    K  HA+++      +   S  
Sbjct: 35  SASANALQDCWKNGNESKEIDDVHTLFRYCTNLQS---AKCLHARLVVSKQIQNVCISAK 91

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF-INMLREGKTP 132
           L+N Y   G ++ AR  FD +  R + +WN +I  Y   G   E +  F + ML  G TP
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
               T  SVL AC   R V +  ++H  ALK     +V+V  +L+ +Y++   + +A  +
Sbjct: 152 DYR-TFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 207

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ MP R+  +W++M++G+ Q+   +EAL L    + +    +  T+ S++ AC      
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDF 263

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            +G  +H+   K G  S +F ++ L+D+YA+ G + D   VF  +  ++++ WN++I  +
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAY 323

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
             + + +  + LF++M+ + + P+  T IS+ S  S +G +   +S     +++   L +
Sbjct: 324 ELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLED 383

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +   + ++ +  + GL+  A  +   +P     S W ++++
Sbjct: 384 ITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVIS-WNTIIS 423


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 336/560 (60%), Gaps = 11/560 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           + GK  HA  I  G +++ L  N LI+ Y+KC  +S   + FD M  + ++SW T    Y
Sbjct: 278 LNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGY 337

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             N    +A+ L   +  EG        + S+L AC     + + K++H + ++  +   
Sbjct: 338 AQNKCYLQALELLRQLQMEG-MDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDP 396

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           V   T ++DVY +CG+I  A R+FES+  ++ V+W+SM++ +V N L  +AL +F   + 
Sbjct: 397 VLQNT-IIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            GLE +  T+ S++ A   L+ L +GK++H  + + GF      +++LVDMYA+CG V D
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVED 515

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           AY +F+  + +N++LW  MIS +  H      + LF +M+   + P+  T++++L ACSH
Sbjct: 516 AYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSH 575

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+V +GKS+ ++M  ++ + P   HY+C++D+LGR   + EAY ++ +M  + T  +W 
Sbjct: 576 SGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWC 635

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL +CR + N E+ E+AA++L  ++ DN GN++L+SN++AAN RW++V   R  ++ S 
Sbjct: 636 ALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSG 695

Query: 470 VKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKL-GYKPETEHDLHDV 520
           + K    SW+E+  K        + HP   +IY KL ++ E++K+  GY  +T+  LH+V
Sbjct: 696 LTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNV 755

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
            +  K ++L  HSE+LA+ +GL+    G PIR+ KNLR+CGDCHSF    SR   RE IV
Sbjct: 756 GEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIV 815

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD +RFHHF +G CSC DFW
Sbjct: 816 RDASRFHHFKDGMCSCGDFW 835



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 211/407 (51%), Gaps = 9/407 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G   H   I  G ++     N L+  Y+KC  I+GARK+FD M
Sbjct: 60  TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 95  PQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
             R  +VSWN+II +Y+ NG   EA+ LF  ML+ G    + +T ++ L AC     +  
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVT-NTYTFAAALQACEDSSFIKL 178

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             Q+H   LK+    +V+V  AL+ +Y + G + +A+ +F ++  ++ VTW+SM+ GF+Q
Sbjct: 179 GMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQ 238

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N LY EAL  F   Q   L+ +Q +I S+I A   L  L+ GK++HA   K GF SN+  
Sbjct: 239 NGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILV 298

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYAKC C+      F  +  K+++ W T  +G++++   ++ + L  ++Q  G+
Sbjct: 299 GNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGM 358

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             +     S+L AC  +  + K K      ++    L +    + +ID+ G  G+I  A 
Sbjct: 359 DVDATMIGSILLACRGLNCLGKIKEIHGYTIRGG--LSDPVLQNTIIDVYGECGIIDYAV 416

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNL---ELAEIAAKQLFGMEPD 437
            +  ++      S W S++ SC  +  L    L   ++ +  G+EPD
Sbjct: 417 RIFESIECKDVVS-WTSMI-SCYVHNGLANKALEVFSSMKETGLEPD 461



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 194/365 (53%), Gaps = 3/365 (0%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T   T  A LQ+C        G   HA I+  G   D   +N L+  Y + G +  A  +
Sbjct: 158 TNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVI 217

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F  +  + IV+WN+++  +  NG   EA+  F ++      P  + ++ S++ A      
Sbjct: 218 FGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKP-DQVSIISIIVASGRLGY 276

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K++H +A+K   D N+ VG  L+D+YAKC  +S   R F+ M  ++ ++W++  AG
Sbjct: 277 LLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAG 336

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN+ Y +AL L R+ Q+ G++ +   I S++ AC GL  L + K++H    + G  S+
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SD 395

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++++D+Y +CG +  A  +F  IE K+VV W +MIS +  +  + + + +F  M++
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            GL P+  T +S+LSA   +  ++KGK     ++++  +L      + ++D+  R G + 
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS-NTLVDMYARCGSVE 514

Query: 391 EAYDL 395
           +AY +
Sbjct: 515 DAYKI 519



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 227/470 (48%), Gaps = 45/470 (9%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y KCG +  A  +FD+M +R I +WN ++G Y +NG    A+ ++  M R     +  +T
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREM-RHLGVSFDSYT 60

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
              +L AC    D+F   ++H  A+K   D  VFV  +L+ +YAKC  I+ A ++F+ M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 198 ERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
            RN+ V+W+S+++ +  N +  EAL LF      G+  N +T ++ + AC   + +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           Q+HA + K+G   +++ A++LV MY + G + +A  +F  +E K++V WN+M++GF ++ 
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY--------FDLMVKQHN 368
              E +  F  +Q A L P++ + IS++ A   +G +  GK          FD  +   N
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLI------------------------LNMP-FDA 403
            L +++   C +   GRA  +    DLI                        L M   D 
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 404 TASMWGSLLASCRNYRNL-ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462
            A+M GS+L +CR    L ++ EI    + G   D    + ++ ++Y      +   R  
Sbjct: 361 DATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTII-DVYGECGIIDYAVRIF 419

Query: 463 KLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
           + I   +V      SW  +     H  +A   +K  ++   MK+ G +P+
Sbjct: 420 ESIECKDV-----VSWTSMISCYVHNGLA---NKALEVFSSMKETGLEPD 461



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 126/237 (53%), Gaps = 3/237 (1%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y KCG + DA  +F+ M ER+  TW++M+ G+V N     AL ++R  + LG+ ++ +T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
              ++ AC  +  L  G ++H +  K G  S +F  +SLV +YAKC  +  A  +F  + 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 299 EKN-VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            +N VV WN++IS +S +    E + LF +M +AG+  N  T+ + L AC     ++ G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
                ++K   VL +V+  + ++ +  R G + EA  +  N+      + W S+L  
Sbjct: 181 QIHAAILKSGRVL-DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVT-WNSMLTG 235



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +        +GK  H  II  G   +   SN L++ Y++CG +  A K+F   
Sbjct: 464 TLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCT 523

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++ W  +I +Y  +G  + AV LF+ M  E   P    T  ++L AC+    V E 
Sbjct: 524 KNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIP-DHITFLALLYACSHSGLVNEG 582

Query: 155 KQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT---WSSMVA 209
           K  L +   +  ++      T L+D+  +   + +A ++ +SM  +NE T   W +++ 
Sbjct: 583 KSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSM--QNEPTPEVWCALLG 639


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 337/575 (58%), Gaps = 10/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + + +C +      G V H   +  GL ++T   N L++ YS C       K+F  
Sbjct: 86  TTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRN 145

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M Q+ +VSW  +I SYT  G   +   LF  M  EG  P   F ++S L A A    +  
Sbjct: 146 MEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRP-DVFAITSALDAFAGNESLKH 204

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H +A++  ++  + V  AL+++Y KCG + +A  +F+ + +++ ++W++++ G+ +
Sbjct: 205 GKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSR 264

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           + L  EA  LF    +L L  N  T++ ++ A A L++L +G+++HA   + G+  + F 
Sbjct: 265 SNLANEAFTLFNE-MLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFV 323

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           A++LVDMY KCG ++ A  +F  +  KN++ W  MI+G+  H R  + + LFE+M+ +G+
Sbjct: 324 ANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGI 383

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  ++ ++L ACSH G+ ++G  +F+ M  +H + P + HY+CM+D+L   G + EAY
Sbjct: 384 QPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAY 443

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           + I  MP +  +S+W SLL  CR +RN++LAE  A+ +F +EP+N G ++LL+NIYA   
Sbjct: 444 EFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAE 503

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RWE V + +  +    +++    SW+E++GK        RNHP+   I   L+ +   M+
Sbjct: 504 RWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQ 563

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + G+ P+ ++ L   +D+   E L  HS KLA+ FG++ L  G PIR+ KN R+C  CH 
Sbjct: 564 EEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHE 623

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S++ GRE I+RD NRFHHF  G CSC  +W
Sbjct: 624 AAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 187/350 (53%), Gaps = 6/350 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G V H  ++  G        N LI+FY+K   I  A  VFDEMPQR I+SWN+IIG   +
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG   +AV LF+ M  EG+   S  T+ SV+ AC      F    +H ++++  +     
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDST-TLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G ALLD+Y+ C      +++F +M ++N V+W++M+  + +   +++   LF+   + G
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  + F I+S + A AG  +L  GK VH    + G    +  A++L++MY KCG + +A 
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
           F+F  + +K+ + WNT+I G+SR   + E   LF +M    L PN  T   +L A + + 
Sbjct: 242 FIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLS 300

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG---LIHEAYDLILN 398
            +E+G+      V++   L + F  + ++D+  + G   L    +D++ N
Sbjct: 301 SLERGREMHAYAVRR-GYLEDNFVANALVDMYVKCGALLLARRLFDMLTN 349



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 163/318 (51%), Gaps = 10/318 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++  + + L + A   +   GK  H   I  G+      +N L+  Y KCG +  AR +F
Sbjct: 185 DVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIF 244

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D + ++  +SWNT+IG Y+ +    EA  LF  ML + +   +  T++ +L A A+   +
Sbjct: 245 DHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRP--NAVTMACILPAAASLSSL 302

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              +++H +A++     + FV  AL+D+Y KCG +  A R+F+ +  +N ++W+ M+AG+
Sbjct: 303 ERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGY 362

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSN 270
             +    +A+ LF + +  G++ +  + S+++ AC+      +G +  +A+  +      
Sbjct: 363 GMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPK 422

Query: 271 MFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +   + +VD+    G + +AY F+ +   E +  +W +++ G   H R+V+   L EK+ 
Sbjct: 423 LKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIH-RNVK---LAEKVA 478

Query: 330 QA--GLHPNEQTYISVLS 345
           +    L P    Y  +L+
Sbjct: 479 EMVFELEPENTGYYVLLA 496



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 6/260 (2%)

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H + +K        V  AL+  YAK   I DA  VF+ MP+R+ ++W+S++ G   N L
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           Y++A+ LF R  + G E +  T+ SV+ AC        G  VH    +TG  S     ++
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+DMY+ C        +F  +E+KNVV W  MI+ ++R     +V  LF++M   G+ P+
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNVFHYSCMIDILGRAGLIHEAYD 394
                S L A +    ++ GKS     ++     VLP     + ++++  + G + EA  
Sbjct: 186 VFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVA---NALMEMYVKCGYMEEARF 242

Query: 395 LILNMPFDATASMWGSLLAS 414
           +  ++    T S W +L+  
Sbjct: 243 IFDHVTKKDTIS-WNTLIGG 261



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
           + G  VH  L K GFG+     ++L+  YAK   + DA  VF  + +++++ WN++I G 
Sbjct: 1   MDGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGC 60

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC-----SHIGMVEKGKS 358
           + +    + + LF +M   G   +  T +SV+ AC     S IG V  G S
Sbjct: 61  ASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYS 111


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 349/605 (57%), Gaps = 44/605 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN-----ILINFYSKCGLISGARK 89
           T  + L +C+R      G+  HA +    L +D L +N      L++ Y+    +S AR+
Sbjct: 262 TFASALPACSRLELLGVGREVHAFV----LKDDDLAANSFVASALVDMYASNEQVSHARR 317

Query: 90  VFDEMPQ--RCIVSWNTIIGSYTTNG-REQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           VFD +P+  R +  WN +I  Y  +G  ++EA+ LF  M  E     SE T++ VL ACA
Sbjct: 318 VFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACA 377

Query: 147 AKRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
            + +VF  K+ +H + +K  M  N FV  AL+D+YA+ G + +A  +F  +  R+ V+W+
Sbjct: 378 -RSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWN 436

Query: 206 SMVAGFVQNELYEEALILFRRAQVLG--------LE------------YNQFTISSVICA 245
           +++ G +   L  EA  L R  Q+          LE             N  T+ +++  
Sbjct: 437 TLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPG 496

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA LAA  +GK++H    +    S++   S+LVDMYAKCGC+  A  VF  +  +NV+ W
Sbjct: 497 CAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITW 556

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           N +I  +  H    E + LF++M   G   PNE T+I+ L+ACSH G+V++G   F  M 
Sbjct: 557 NVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMK 616

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLEL 423
           + +   P  + ++C++D+LGRAG + EAY +I +M P +   S W ++L +CR +RN++L
Sbjct: 617 RDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKL 676

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK- 482
             IAA++LF +EPD A +++LL NIY+A   WE     R ++R   V KE   SW+E+  
Sbjct: 677 GRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDG 736

Query: 483 -------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                  G+  HP  A++++ ++ L E M++ GY P+T   LHDV+++ K  +L +HSEK
Sbjct: 737 AIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEK 796

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   PG  IR+ KNLR+C DCH   KF SR+ GRE ++RD+ RFHHF +G+CS
Sbjct: 797 LAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCS 856

Query: 596 CWDFW 600
           C D+W
Sbjct: 857 CGDYW 861



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 194/398 (48%), Gaps = 34/398 (8%)

Query: 35  TLQATLQSCAR--ERAPVRGKVCHAKIIGMGL---NNDTLTSNILINFYSKCGLISGARK 89
           TL + L +C+   ++    G+  HA  +  G      +    N L++ Y++ GL+  A++
Sbjct: 154 TLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQR 213

Query: 90  VFDEMPQRC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           +F         +V+WNT+I      GR +EAV +  +M+  G  P    T +S L AC+ 
Sbjct: 214 LFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRP-DGVTFASALPACSR 272

Query: 148 KRDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTW 204
              +   +++H F LK   +  N FV +AL+D+YA    +S A RVF+ +PE  R    W
Sbjct: 273 LELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMW 332

Query: 205 SSMVAGFVQN-ELYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           ++M+ G+ Q+  + EEA+ LF R +   G   ++ T++ V+ ACA        + VH  +
Sbjct: 333 NAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYV 392

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG----------- 311
            K    SN F  ++L+DMYA+ G + +A+ +F+ I+ +++V WNT+I+G           
Sbjct: 393 VKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAF 452

Query: 312 -------FSRHARSVEVMILFEKMQQAGLH--PNEQTYISVLSACSHIGMVEKGKSYFDL 362
                      A S E M+  +     G    PN  T +++L  C+ +    +GK     
Sbjct: 453 QLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGY 512

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            V+ H +  ++   S ++D+  + G +  A  +   +P
Sbjct: 513 AVR-HALESDLAVGSALVDMYAKCGCLALARAVFDRLP 549



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 167/343 (48%), Gaps = 35/343 (10%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A   +T+   L +CAR       +  H  ++   + ++    N L++ Y++ G +  A  
Sbjct: 363 APSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHT 422

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS--------------- 134
           +F  +  R IVSWNT+I      G   EA      ++RE + P S               
Sbjct: 423 IFAMIDLRDIVSWNTLITGCIVQGLISEA----FQLVREMQLPSSAASGETMLEGDDTSV 478

Query: 135 --------EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                     T+ ++L  CA        K++H +A++ A++ ++ VG+AL+D+YAKCG +
Sbjct: 479 DGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCL 538

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICA 245
           + A  VF+ +P RN +TW+ ++  +  + L +EAL LF R    G    N+ T  + + A
Sbjct: 539 ALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAA 598

Query: 246 CAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNV 302
           C+    + +G ++   + +  GF    +  + +VD+  + G + +AY + S +   E  V
Sbjct: 599 CSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQV 658

Query: 303 VLWNTMISGFSRHARSVEV-MILFEKMQQAGLHPNEQTYISVL 344
             W+TM+ G  R  R+V++  I  E++ +  L P+E ++  +L
Sbjct: 659 SAWSTML-GACRLHRNVKLGRIAAERLFE--LEPDEASHYVLL 698



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 15/307 (4%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  V    PQ      ++ I S T  G    A+    ++     +    F +   + + A
Sbjct: 3   AATVIPPAPQ---PPTSSSIRSLTAAGHHAAALRALSSLAASPSSALDHFALPPAIKSAA 59

Query: 147 AKRDVFECKQLHVFALKAAM--DRNVFVGTALLDVYAKCGLISDASRVFESMPE--RNEV 202
           A RD    + +H  +L+ A+       V  ALL  YA+CG +  A  +F + P   R+ V
Sbjct: 60  ALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAV 119

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ--GKQVHA 260
           +++S+++       +  AL   R   +   E + FT+ SV+ AC+ LA      G++ HA
Sbjct: 120 SYNSLISALCLFRRWGHALDALRD-MLADHEVSSFTLVSVLLACSHLADQGHRLGREAHA 178

Query: 261 VLCKTGF---GSNMFAASSLVDMYAKCGCVVDAYFVF--SGIEEKNVVLWNTMISGFSRH 315
              K GF   G   F  ++L+ MYA+ G V DA  +F  SG    ++V WNTMIS   + 
Sbjct: 179 FALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQG 238

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
            R  E + +   M   G+ P+  T+ S L ACS + ++  G+     ++K  ++  N F 
Sbjct: 239 GRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFV 298

Query: 376 YSCMIDI 382
            S ++D+
Sbjct: 299 ASALVDM 305


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/543 (40%), Positives = 334/543 (61%), Gaps = 18/543 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           DT + NI+++ Y +      A+  FD MP +   SWNT+I  Y   G  ++A  LF +M+
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM 182

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            + +  ++      + C    K   F          K A  R V   TA++  Y K   +
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHF---------FKVAPVRGVVAWTAMITGYMKAKKV 233

Query: 187 SDASRVFESMP-ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
             A  +F+ M   +N VTW++M++G+V+N   E+ L LFR     G+  N   +SS +  
Sbjct: 234 ELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLG 293

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L+AL  G+Q+H ++ K+   +++ A +SL+ MY KCG + DA+ +F  +++K+VV W
Sbjct: 294 CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 353

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N MISG+++H  + + + LF +M    + P+  T+++VL AC+H G+V  G +YF+ MV+
Sbjct: 354 NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVR 413

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + V P   HY+CM+D+LGRAG + EA  LI +MPF   A+++G+LL +CR ++N+ELAE
Sbjct: 414 DYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAE 473

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK- 484
            AA++L  +   NA  ++ L+NIYA+  RWE+VAR RK +++S V K    SW+EI+ K 
Sbjct: 474 FAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKV 533

Query: 485 -------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                  R HP +  I+ KL++L ++MK  GYKPE E  LH+VE+ +K++LL+ HSEKLA
Sbjct: 534 HHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLA 593

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FG + L  G  I++ KNLRICGDCH  +KF S I  RE IVRD  RFHHF +GSCSC 
Sbjct: 594 VAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCG 653

Query: 598 DFW 600
           D+W
Sbjct: 654 DYW 656



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S L + L  C+   A   G+  H  +    L ND      LI+ Y KCG +  A K+F+ 
Sbjct: 285 SGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEV 344

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV-- 151
           M ++ +V+WN +I  Y  +G   +A+ LF  M+     P    T  +VL AC     V  
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRP-DWITFVAVLLACNHAGLVNI 403

Query: 152 ----FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
               FE   +  + ++   D      T ++D+  + G + +A ++  SMP R
Sbjct: 404 GMAYFE-SMVRDYKVEPQPDHY----TCMVDLLGRAGKLEEALKLIRSMPFR 450



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH-ARSVE 320
           L K      +F  + ++    + G +  A  VF G+  KN + WN+++ G S+  +R +E
Sbjct: 52  LTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMME 111

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
              LF+++ +    P+  +Y  +LS        EK +S+FD M        +   ++ MI
Sbjct: 112 AHQLFDEIPE----PDTFSYNIMLSCYVRNVNFEKAQSFFDRM-----PFKDAASWNTMI 162

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
               R G + +A +L  +M  +     W ++++      +LE A
Sbjct: 163 TGYARRGEMEKARELFYSM-MEKNEVSWNAMISGYIECGDLEKA 205


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/581 (36%), Positives = 337/581 (58%), Gaps = 13/581 (2%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           NA  +S++     +    R     K  H   +  G   +      L++ YSK G +  AR
Sbjct: 121 NAVTISSVLPAFANLGLIRI---AKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVAR 177

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           ++F+ M +R +V+WN I+  Y+ +G  +EA+ LF N++R        +T+ S++ A  + 
Sbjct: 178 QLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLF-NLMRRKGLLVDFYTIMSLIPASLSV 236

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
             +     +H F ++   + +  + TAL+D+Y     + DA RVF  M  ++   W+ M+
Sbjct: 237 GCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLML 296

Query: 209 AGFVQNELYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            GF     ++ A+  F +   +  L+ +   +  ++ +C+   AL QG++VHA+  KT F
Sbjct: 297 TGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCF 356

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            +N+F  S+++DMYA CG + DA   F G+ EK+VV WN MI+G   +    + + LF +
Sbjct: 357 ANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQ 416

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M+ +GL P+E T++SVL ACSH GMV +G   F  MVK  +V+PN+ HY+C+IDILGRAG
Sbjct: 417 MKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAG 476

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            +  AY  I NMPF     ++ +LL +CR + N++L    ++++F MEP++AG ++LLSN
Sbjct: 477 QLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSN 536

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEK 499
           +YA    WE V   R  +R   +KK+   S +EI         G+++HP+  +I   L+ 
Sbjct: 537 MYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKG 596

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           L+ ++KK GY P T   L DV D  K+++L HHSEK+A+ FGLM   P   IRI KNLR 
Sbjct: 597 LILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRT 656

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCH+  KF S++ GR  +++D NRFH F +G CSC D+W
Sbjct: 657 CDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 216/420 (51%), Gaps = 8/420 (1%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           S++     + L+   A++    ++  P++    HA+II  GL ++T  SN L+N Y  CG
Sbjct: 13  SSNPTQRLSPLAQPHASILRKLKDLKPLQQ--IHAQIITSGLTHNTFLSNSLMNAYVYCG 70

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
           L++ A+++F   P + +VSW  +I     N    EA+ +F  M+     P +  T+SSVL
Sbjct: 71  LLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKP-NAVTISSVL 129

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            A A    +   K +H F ++   + NVFV TAL+D+Y+K G +  A ++FESM ERN V
Sbjct: 130 PAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVV 189

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           TW+++V+G+  +   EEA+ LF   +  GL  + +TI S+I A   +  L  G  +H  +
Sbjct: 190 TWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFI 249

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            +TG+ ++    ++L+D+Y    CV DA+ VFS +  K+V  W  M++GFS        +
Sbjct: 250 IRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAI 309

Query: 323 ILFEKMQQ-AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
             F KM     L  +    + +LS+CSH G +++G+    L +K      N+F  S +ID
Sbjct: 310 KHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKT-CFANNIFVGSAVID 368

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNA 439
           +    G + +A      M  +     W +++A      Y    +      +  G++PD +
Sbjct: 369 MYANCGNLEDAKRFFYGMG-EKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDES 427


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 337/574 (58%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L A + + A  R+   G+ CH   +  G        N ++  Y +C  +  A KVF+ +
Sbjct: 110 VLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESV 169

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                 ++N++I  Y   G+   ++ +  NM  E +  +   +  +VL  CA+ +D    
Sbjct: 170 SGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAE-KWDYVSYVAVLGHCASMKDSVLG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H  ALK  ++ NV+VG+AL+D+Y KC  + DA+R FE +PE+N V+W++++  + QN
Sbjct: 229 AQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           ELYE+AL LF   ++ G++ N+FT +  + +CAGLAAL  G  + A + KTG   ++  +
Sbjct: 289 ELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVS 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+K G + DA+ VF  +  ++VV WN +I+G++ H  + E M  F  M  A + 
Sbjct: 349 NALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVI 408

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ VLSAC+ +G+V++   Y + M+K+  + P   HY+CM+ +L R G + EA  
Sbjct: 409 PSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAER 468

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I+N         W SLL SC+ Y+N  L    A+Q+  +EP + G ++LLSN+YA   R
Sbjct: 469 FIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANR 528

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
           W+ V + RK +R+  V+K    SW+ +          ++ HP++ +I  KLE+L++++K 
Sbjct: 529 WDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKA 588

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY P     LHD++D RK+E L++HSEKLAL FGL+    G  I IMKNLRIC DCH  
Sbjct: 589 IGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVA 648

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S +  R+ +VRD  RFH    G CSC D+W
Sbjct: 649 IKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 191/360 (53%), Gaps = 14/360 (3%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           +GK  HA++I    + D +  N LI+FY+KCG +  AR VFD MP R  VS N ++  Y 
Sbjct: 29  KGKALHARLI-TAAHFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYA 87

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           ++GR +E++ L    LR      +E+ +S+ + A A  R     +Q H +A+KA      
Sbjct: 88  SSGRHKESLQL----LRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQR 143

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           +V  A+L +Y +C  + DAS+VFES+   +   ++SM+ G++     + +L + R     
Sbjct: 144 YVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGE 203

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
             +++  +  +V+  CA +   + G QVHA   K     N++  S+LVDMY KC  V DA
Sbjct: 204 AEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDA 263

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
              F  + EKNVV W  +++ ++++    + + LF  M+  G+ PNE TY   L++C+ +
Sbjct: 264 NRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGL 323

Query: 351 GMVEKGKSYFDLMVK----QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
             +  G +    ++K     H ++ N      ++++  ++G I +A+ + ++MP     S
Sbjct: 324 AALRTGNALGACVMKTGHWDHLLVSN-----ALMNMYSKSGSIEDAHRVFISMPLRDVVS 378


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/593 (35%), Positives = 362/593 (61%), Gaps = 17/593 (2%)

Query: 24  ASANANAT------ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF 77
           ++AN N T      E+ST    L+ CA  +A + GK  H+ ++  G  +D L +N+LI  
Sbjct: 9   SAANGNRTVDERREEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEM 68

Query: 78  YSKCGLISGARKVFDEMPQRC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           Y KCG I+ AR VFD++ ++   ++SWN IIG+YT NG  +EA+ LF  M  EG    ++
Sbjct: 69  YGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIA-NQ 127

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
            T+ + + ACA+     E + +H  A+   ++ +  VGT+L++++ KC  +  A  VF+S
Sbjct: 128 VTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDS 187

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           +P +N VTW++MVA + QN   ++A+ +FR   + G++ +  T  ++I ACA LAA  +G
Sbjct: 188 LPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEG 247

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           + VH  +  +G   ++   ++++  Y KCG + +A  +F  + +KN V W+ +++ ++++
Sbjct: 248 RMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQN 307

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               E + L+ +M Q GL  N  T++ +L ACSH G    G  YF  M++   V+P   H
Sbjct: 308 GYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEH 367

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           Y  +ID+LGR+G +  + DLI +MP++  +S W +LL +CR + +++     A+ ++ ++
Sbjct: 368 YLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELD 427

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNH 487
           P+++G ++LLSN+Y++  R +E  R RK +R   + K+   S +E+K         ++ H
Sbjct: 428 PEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLH 487

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
           P++  I++++E+L   +K+ GY  +    L DVE+  K++LL +HSE+LA+ FGL+   P
Sbjct: 488 PQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPP 547

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G  + I+KNLR+C DCH+ +K  S++ GR+ +VRD  RFHHF NG+CSC D+W
Sbjct: 548 GTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 339/574 (59%), Gaps = 10/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +    L++C+   A   G+  H +I   G  +D    N L+  Y+KCG I  A  VF  +
Sbjct: 175 SFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL 234

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R IVSW +II  Y  NG+  EA+ +F  M +    P     + SVL A     D+   
Sbjct: 235 VDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP-DWIALVSVLRAYTDVEDLEHG 293

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +K  ++    +  +L  +YAKCG +  A   F  +   + + W++M++G+V+N
Sbjct: 294 KSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKN 353

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              EEA+ LFR  +   +  +  T++S I ACA + +L   + +   +  + F +++   
Sbjct: 354 GYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVN 413

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+D YAKCG V  A FVF  I +K+VV+W+ M+ G+  H +  E +ILF  M+QAG+ 
Sbjct: 414 TSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVS 473

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++ +L+AC + G+VE+G   F  M + + + P   HY+C++D+LGRAG +  AY+
Sbjct: 474 PNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYN 532

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            ++NMP +   S+WG+LL++C+ +R++ L E AA++LF ++P N G+++ LSN+YA++  
Sbjct: 533 FVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCL 592

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ VA+ R L+R+  + K    S +EI GK        + HPR  EI+ ++E L   +K+
Sbjct: 593 WDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKE 652

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P TE  LHD+     +E L +HSE+LA+ +GL+   PG  +RI KNLR C +CH+ 
Sbjct: 653 AGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAA 712

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S++  RE +VRD  RFHHF +G+CSC D+W
Sbjct: 713 IKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 178/357 (49%), Gaps = 3/357 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           +AK++  GL         L+N  S  G +S ARK+FD+ P   +  WN I+  Y+ +G  
Sbjct: 95  YAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFF 154

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             A+ ++  M     +P   F+   VL AC+A   +   +++H    +   + +VFV   
Sbjct: 155 GHAIEMYARMQVACVSP-DGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +YAKCG I  A+ VF  + +R  V+W+S+++G+ QN    EAL +F   +   +  +
Sbjct: 214 LVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPD 273

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
              + SV+ A   +  L  GK +H  + K G         SL  +YAKCG V+ A   F+
Sbjct: 274 WIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFN 333

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +E  +++ WN MISG+ ++  + E + LF  M+   + P+  T  S ++AC+ IG +E 
Sbjct: 334 QVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLEL 393

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            + + D  +       +V   + +ID   + G +  A  +   +P D    +W +++
Sbjct: 394 AR-WMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMM 448



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 120/210 (57%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q++   L   +    F+   L++  +  G +S A ++F+  P+ +   W+++V  + ++ 
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
            +  A+ ++ R QV  +  + F+   V+ AC+ L AL  G++VH  + + GF S++F  +
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            LV +YAKCG +V A  VF  + ++ +V W ++ISG++++ + +E + +F +M++  + P
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +    +SVL A + +  +E GKS    ++K
Sbjct: 273 DWIALVSVLRAYTDVEDLEHGKSIHGCVIK 302


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/558 (36%), Positives = 334/558 (59%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  +  +    + +D    N  +N +   GL+  AR++F++M  R +V+WN +I  Y  
Sbjct: 225 GKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQ 284

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    EAV LF  + ++G    ++ T   +L    +   + + K +H    +A  DR+  
Sbjct: 285 NENFGEAVRLFGRLQQDG-VKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAV 343

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V TAL+ +Y +C     A ++F  M  ++ +TW+ M   + QN   +EAL LF+  Q+ G
Sbjct: 344 VATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEG 403

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
                 T+ +V+  CA LAAL +G+Q+H+ + +  F   M   ++L++MY KCG + +A 
Sbjct: 404 RRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAM 463

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + ++++++WN+M+  +++H    E + LF +MQ  G+  +  +++SVLSA SH G
Sbjct: 464 SVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSG 523

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF-DATASMWGS 410
            V  G  YF  M++  ++ P    Y C++D+LGRAG I EA D++L +        +W +
Sbjct: 524 SVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMT 583

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +CR +   + A+ AA+Q+   +P ++G +++LSN+YAA   W+ V R RKL+R   V
Sbjct: 584 LLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGV 643

Query: 471 KKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           KKE  +S +EI        +G R+HPR   IY++L+ L  EM+  GY P+T+  LHDVED
Sbjct: 644 KKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVED 703

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
            RK+++L +HSE+LA+ FGL+   PG P+R++KNLR+C DCH+  K+ S++ GRE +VRD
Sbjct: 704 ERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRD 763

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFH+F +G CSC D+W
Sbjct: 764 THRFHNFKDGRCSCKDYW 781



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 200/405 (49%), Gaps = 5/405 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L +CA   +   G   H +I+  G   D      LIN Y+KCG + GA   F  +
Sbjct: 107 TYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRL 166

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSW  +I +   + +   A  L+  M  +G  P ++ T+ +V  A      + E 
Sbjct: 167 EHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVP-NKITLYTVFNAYGDPNYLSEG 225

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K ++       M+ +V V  + ++++   GL+ DA R+FE M +R+ VTW+ ++  +VQN
Sbjct: 226 KFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQN 285

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E + EA+ LF R Q  G++ N  T   ++     L +L +GK +H ++ + G+  +   A
Sbjct: 286 ENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVA 345

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y +C     A+ +F  +  K+V+ W  M   ++++    E + LF++MQ  G  
Sbjct: 346 TALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRR 405

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P   T ++VL  C+H+  ++KG+     +++    +  V   + +I++ G+ G + EA  
Sbjct: 406 PTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE-TALINMYGKCGKMAEAMS 464

Query: 395 LILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPD 437
           +   M       +W S+L +     Y +  L      QL G++ D
Sbjct: 465 VFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKAD 508



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 208/403 (51%), Gaps = 3/403 (0%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A LQ C+  +    G+  H  +   G   + L    LI  Y++CG +  A++VF+ + ++
Sbjct: 9   ALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERK 68

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + +W  +IG Y   G    A+ +F  M  E   P ++ T  ++L ACA+   + +  ++
Sbjct: 69  DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMP-TKVTYVAILNACASTESLKDGMEI 127

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   L+   + +VFVGTAL+++Y KCG +  A   F+ +  R+ V+W++M+A  VQ++ +
Sbjct: 128 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQF 187

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
             A  L+RR Q+ G+  N+ T+ +V  A      L +GK V+ ++      S++   +S 
Sbjct: 188 ALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSA 247

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           V+M+   G + DA  +F  + +++VV WN +I+ + ++    E + LF ++QQ G+  N+
Sbjct: 248 VNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKAND 307

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ +L+  + +  + KGK   +L VK+     +    + ++ + GR     +A+ + +
Sbjct: 308 ITFVLMLNVYTSLTSLAKGKVIHEL-VKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFV 366

Query: 398 NMPFDATASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPDNA 439
           +M      +     +A  +N +R   L      QL G  P +A
Sbjct: 367 DMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSA 409



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL A L +CA   A  +G+  H+ II      + +    LIN Y KCG ++ A  VF++
Sbjct: 409 ATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEK 468

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R I+ WN+++G+Y  +G   E + LF  M  +G       +  SVL A +    V +
Sbjct: 469 MAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDG-VKADAVSFVSVLSALSHSGSVTD 527

Query: 154 CKQLHVFALK 163
             Q  V  L+
Sbjct: 528 GYQYFVAMLQ 537


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/575 (37%), Positives = 326/575 (56%), Gaps = 45/575 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L + A+      GK  H  II      +    N L + Y+KCG I  AR +FD +
Sbjct: 157 TIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCL 216

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +VSWN +I  Y  NG+ ++ + L   M   G  P  + T+S+++ A          
Sbjct: 217 TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP-DQVTMSTIIAA---------- 265

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                                    Y +CG + +A RVF    E++ V W++M+ G+ +N
Sbjct: 266 -------------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKN 300

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+AL+LF    +  +E + +T+SSV+ +CA LA+L  G+ VH      G  +N+  +
Sbjct: 301 GREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS 360

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S+L+DMY+KCG + DA  VF+ +  +NVV WN MI G +++    + + LFE M Q    
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFK 420

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T+I +LSAC H   +E+G+ YFD +  QH + P + HY+CM+++LGR G I +A  
Sbjct: 421 PDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVA 480

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI NM  D    +W +LL+ C    ++  AE+AA+ LF ++P  A  +++LSN+YA+  R
Sbjct: 481 LIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGR 540

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W++VA  R L++   VKK    SW+EI  +        R HP   +IY KL  L+ ++++
Sbjct: 541 WKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQE 600

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV-PIRIMKNLRICGDCHS 565
            G+ P T   LHDV +  K + +  HSEKLAL FGL+    G+ PIRI+KN+RIC DCH 
Sbjct: 601 EGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHE 660

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           FMKFASRI GR+ I+RD NRFHHF+ G CSC D W
Sbjct: 661 FMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 118/195 (60%)

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
           + R++F   ALL  YAK G I +    F+ MP R+ V++++ +AGF  N   +E+L LF+
Sbjct: 85  LKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
           R Q  G E  ++TI S++ A A L+ L  GKQ+H  +    F  N+F  ++L DMYAKCG
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCG 204

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            +  A ++F  + +KN+V WN MISG++++ +  + + L  +M+ +G  P++ T  ++++
Sbjct: 205 EIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIA 264

Query: 346 ACSHIGMVEKGKSYF 360
           A    G V++ +  F
Sbjct: 265 AYCQCGRVDEARRVF 279


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/562 (38%), Positives = 318/562 (56%), Gaps = 44/562 (7%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y+  G +  +  +F       +  W  II  +   G  ++A+  +  ML +G  P + FT
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEP-NAFT 77

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            SS+L  C     +   K LH  A+K   D +++V T LLDVYA+ G +  A ++F++MP
Sbjct: 78  FSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 198 E-------------------------------RNEVTWSSMVAGFVQNELYEEALILFRR 226
           E                               R+ V W+ M+ G+ QN +  EAL+LFRR
Sbjct: 134 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 193

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
                 + N+ T+ SV+ AC  L AL  G+ VH+ +   G   N+   ++LVDMY+KCG 
Sbjct: 194 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + DA  VF  I++K+VV WN+MI G++    S E + LF+ M + GLHP   T+I +LSA
Sbjct: 254 LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA 313

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           C H G V +G   F+ M  ++ + P + HY CM+++LGRAG + +AY+L+ NM  +    
Sbjct: 314 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 373

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +WG+LL +CR +  + L E   + L      N+G ++LLSNIYAA   W+ VAR R +++
Sbjct: 374 LWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMK 433

Query: 467 DSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
           DS VKKE   S +E+         G  NHP+  EIY  LE++   +K  GY P+T+  LH
Sbjct: 434 DSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLH 493

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           D+ ++ K+  L  HSEKLA+ FGL+   PG  I+I+KNLR+C DCH   K  S+I GR+ 
Sbjct: 494 DIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKI 553

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           +VRD NRFHHF NGSCSC D+W
Sbjct: 554 VVRDRNRFHHFVNGSCSCGDYW 575



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 39/350 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L+ C  E     GK  H++ + +G ++D      L++ Y++ G +  A+++FD M
Sbjct: 77  TFSSILKLCPIEP----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132

Query: 95  PQRCIVS-------------------------------WNTIIGSYTTNGREQEAVALFI 123
           P++ +VS                               WN +I  YT NG   EA+ LF 
Sbjct: 133 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFR 192

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            ML+    P +E TV SVL AC     +   + +H +     +  NV VGTAL+D+Y+KC
Sbjct: 193 RMLKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 251

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA  VF+ + +++ V W+SM+ G+      +EAL LF+    +GL     T   ++
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311

Query: 244 CACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKN 301
            AC     + +G  + + +  + G    +     +V++  + G V  AY +   +  E +
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 371

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VLW T++     H +      + E +    L  N  TYI + +  + +G
Sbjct: 372 PVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYILLSNIYAAVG 420



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 14/191 (7%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A A   E++ L + L +C +  A   G+  H+ I   G+  +      L++ YSKCG + 
Sbjct: 197 AKAKPNEVTVL-SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 255

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            AR VFD++  + +V+WN++I  Y   G  QEA+ LF +M R G  P +  T   +L AC
Sbjct: 256 DARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHP-TNITFIGILSAC 314

Query: 146 AAKR------DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-E 198
                     D+F  K    + ++  ++        ++++  + G +  A  + ++M  E
Sbjct: 315 GHSGWVTEGWDIFN-KMKDEYGIEPKIEHY----GCMVNLLGRAGHVEQAYELVKNMNIE 369

Query: 199 RNEVTWSSMVA 209
            + V W +++ 
Sbjct: 370 PDPVLWGTLLG 380


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 340/578 (58%), Gaps = 14/578 (2%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T+ + L SCA       G+  H + + +GL+ D   SN L+  Y +CG +   +K F  M
Sbjct: 492  TMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLM 551

Query: 95   PQRCIVSWNTIIGSYTTNGREQ-EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                 VSWN++IG+   +     EAV  F+ M+R G  P +  T  ++L A ++      
Sbjct: 552  LDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDP-NRVTFITILAAVSSLSLHEL 610

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFV 212
             KQ+H   LK  +  +  +  ALL  Y KCG +     +F  M +R +EV+W+SM++G++
Sbjct: 611  GKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYI 670

Query: 213  QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
             NEL  +A+ +       G   + FT ++V+ ACA +A L +G +VH    +    S++ 
Sbjct: 671  HNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIV 730

Query: 273  AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              S+LVDMYAKCG +  A   F  +  +N+  WN+MISG++RH    + + LF +M+  G
Sbjct: 731  IGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQG 790

Query: 333  LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              P+  T++ VLSACSH G+V +G S+FD M + + + P + H+SCM+D+LGR G +++ 
Sbjct: 791  PLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKM 850

Query: 393  YDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
             D +  MP      +W ++L +C   N RN  L   AA+ L  MEP NA N++LLSN+YA
Sbjct: 851  EDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYA 910

Query: 451  ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
            +  +W++VA+ R  +R + VKKE   SWV +K        G ++HP    IY KL++L  
Sbjct: 911  SGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNG 970

Query: 503  EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            +M+  GY PET   L+D+E   K+ELL +HSEK+A+ F ++     +PIRI+KNLR+CGD
Sbjct: 971  KMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPSKMPIRILKNLRVCGD 1029

Query: 563  CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            CHS  K+ S+I  R+ ++RD NRFHHF NG CSC DFW
Sbjct: 1030 CHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 184/363 (50%), Gaps = 21/363 (5%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G  +D    + L++ ++K G I  A+ +F +M  R +VS N +I       R +EAV LF
Sbjct: 314 GFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELF 373

Query: 123 INMLREGK----------TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM-DRNVF 171
           + M    +          T + EF V         KR   +  ++H F +++ + +  + 
Sbjct: 374 MEMKDSVELNPNSYMIILTAFPEFHVLE-----NGKR---KGSEVHAFLIRSGLLNAQIA 425

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G  L+++YAKCG I+DA  VF  M  ++ VTW+SM+ G  QN+ + EA+  F+  +   
Sbjct: 426 IGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTE 485

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L  + FT+ S + +CA L  +  G+Q+H    K G   ++  +++L+ +Y +CG V +  
Sbjct: 486 LYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQ 545

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARS-VEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             FS + + + V WN++I   +    S +E +  F  M +AG  PN  T+I++L+A S +
Sbjct: 546 KAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSL 605

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
            + E GK    L++K+ NV  +    + ++   G+ G +    ++   M        W S
Sbjct: 606 SLHELGKQIHALVLKR-NVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNS 664

Query: 411 LLA 413
           +++
Sbjct: 665 MIS 667



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 161/318 (50%), Gaps = 25/318 (7%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H ++   G  ND    N LIN Y++ G +   RKVFDEMP R +VSW+ +I  YT N   
Sbjct: 96  HLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMP 155

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK--------QLHVFALKAAMD 167
            EA  LF  M+ +G  P + +   SV+ AC       EC         Q+H    K    
Sbjct: 156 NEACELFRKMVSDGFMP-NHYAFGSVIRACQ------ECGEYGLKFGMQIHGLMSKTQYV 208

Query: 168 RNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
            +V     L+ +Y    G++  A R F+S+  RN V+ +SM++ + Q      A  +F  
Sbjct: 209 NDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFST 268

Query: 227 AQ--VL--GLEYNQFTISSVICACAGLA--ALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
            Q  V+  GL+ N++T  S+I A   LA   L+  +Q+   + K+GF  +++  S+LV  
Sbjct: 269 MQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSG 328

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA-GLHPNEQT 339
           +AK G +  A  +F  +  +NVV  N +I G  R  R  E + LF +M+ +  L+PN  +
Sbjct: 329 FAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPN--S 386

Query: 340 YISVLSACSHIGMVEKGK 357
           Y+ +L+A     ++E GK
Sbjct: 387 YMIILTAFPEFHVLENGK 404



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 150/294 (51%), Gaps = 18/294 (6%)

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           +C +K    + ++LH+   K     ++F+   L+++YA+ G +    +VF+ MP RN V+
Sbjct: 86  SCGSK----DAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVS 141

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA--GLAALIQGKQVHAV 261
           WS +++G+ +N +  EA  LFR+    G   N +   SVI AC   G   L  G Q+H +
Sbjct: 142 WSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGL 201

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVD-AYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           + KT + +++ A++ L+ MY     +VD A   F  I  +N+V  N+MIS + +   +V 
Sbjct: 202 MSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVS 261

Query: 321 VMILFEKMQQA----GLHPNEQTYISVLSA-CSHIGMVEKGKSYFDLM---VKQHNVLPN 372
              +F  MQ+     GL PNE T+ S++SA CS   +   G    + +   V++   L +
Sbjct: 262 AFDIFSTMQKEVMGDGLKPNEYTFGSLISATCS---LANSGLVLLEQLLTRVEKSGFLHD 318

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           ++  S ++    +AG I  A ++   M +    S+ G ++   R  R  E  E+
Sbjct: 319 LYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVEL 372


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/614 (34%), Positives = 354/614 (57%), Gaps = 53/614 (8%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
             ++C+  +    GK  +  ++ +G   ++     +++ + KCG +  AR+ F+E+  + 
Sbjct: 117 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 176

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  WN ++  YT+ G  ++A+ +F  M+ EG  P S  T++S + AC     +   +++H
Sbjct: 177 VFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNS-ITIASAVSACTNLSLLRHGREIH 235

Query: 159 VFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA--GFVQN- 214
            + +K   +D ++ VG +L+D YAKC  +  A R F  + + + V+W++M+A  GF Q  
Sbjct: 236 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYG 295

Query: 215 ------ELYEE----------------------------------ALILFRRAQVLGLEY 234
                 E ++                                   AL L R   +  +E 
Sbjct: 296 DGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEV 355

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N  T+ S + AC+ LAAL QGK++H  + + G  +  F  +SL+DMY +CG +  +  +F
Sbjct: 356 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 415

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             + ++++V WN MIS +  H   ++ + LF++ +  GL PN  T+ ++LSACSH G++E
Sbjct: 416 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 475

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +G  YF +M  ++ + P V  Y+CM+D+L RAG  +E  + I  MPF+  A++WGSLL +
Sbjct: 476 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 535

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEK 474
           CR + N +LAE AA+ LF +EP ++GN++L++NIY+A  RWE+ A+ R L+++  V K  
Sbjct: 536 CRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPP 595

Query: 475 SKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
             SW+E+K        G  +HP + +I +K+E L  ++K++GY P+T   L DV++  K+
Sbjct: 596 GCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKE 655

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
             L  HSEK+AL FGL+    G P+RI+KNLR+CGDCHS  KF S++  R+ I+RD  RF
Sbjct: 656 FSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRF 715

Query: 587 HHFTNGSCSCWDFW 600
           HHF +G CSC D+W
Sbjct: 716 HHFVDGVCSCGDYW 729



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 213/461 (46%), Gaps = 55/461 (11%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + LQ C +      G   HA+++  G++      + L+  Y + G +  AR++FD+M +R
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + SW  I+  Y   G  +E + LF  M+ EG  P   F    V  AC+  ++    K +
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP-DHFVFPKVFKACSELKNYRVGKDV 133

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           + + L    + N  V  ++LD++ KCG +  A R FE +  ++   W+ MV+G+     +
Sbjct: 134 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 193

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASS 276
           ++AL +FR+  + G++ N  TI+S + AC  L+ L  G+++H    K     S++   +S
Sbjct: 194 KKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNS 253

Query: 277 LVDMYAKCGCVVDA-----------------------------------YF--------V 293
           LVD YAKC  V  A                                   +F        V
Sbjct: 254 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSV 313

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           FS +  ++VV+WN++IS  ++  RSV  + L  +M  + +  N  T +S L ACS +  +
Sbjct: 314 FSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAAL 373

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            +GK     +++      N F  + +ID+ GR G I ++  +   MP     S W +++ 
Sbjct: 374 RQGKEIHQFIIRCGLDTCN-FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS-W-NVMI 430

Query: 414 SCRNYRNLELAEIAAKQLF---GMEPDNAGNHLLLSNIYAA 451
           S        +  +   Q F   G++P    NH+  +N+ +A
Sbjct: 431 SVYGMHGFGMDAVNLFQQFRTMGLKP----NHITFTNLLSA 467



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +C++  A  +GK  H  II  GL+      N LI+ Y +CG I  +R++FD M
Sbjct: 359 TMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLM 418

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
           PQR +VSWN +I  Y  +G   +AV LF      G  P +  T +++L AC+    + E 
Sbjct: 419 PQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKP-NHITFTNLLSACSHSGLIEEG 477

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
            K   +   + AMD  V     ++D+ ++ G  ++     E MP E N   W S++  
Sbjct: 478 WKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 535


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/607 (37%), Positives = 355/607 (58%), Gaps = 30/607 (4%)

Query: 14  KSFSSSAIASAS-----ANANATELSTLQATLQS-----CARERAPVRGKVCHAK-IIGM 62
           +S S++A+A+A      A A    +ST + T  +         RAP  G++  A+ +   
Sbjct: 17  RSLSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAP--GRLADARHLFDR 74

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
               D ++ N L+  +   G   GAR++F  MP R + SWNT++   + +G  +EA  +F
Sbjct: 75  IPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVF 134

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           + M       ++   VS   C+     D+   ++   +   A    +  + TA++  Y  
Sbjct: 135 LAMPVRNSVSWNAM-VSGFACS----GDMSTAEE---WFRNAPEKEDAVLWTAMVSGYMD 186

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISS 241
            G +  A + FE+MP RN V+W+++VAG+V+N   ++AL LFR   +   ++ N  T+SS
Sbjct: 187 IGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSS 246

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           V+  C+ L+AL  GKQ+H    K     N+   +SLV MY KCG +  A  +F  +  ++
Sbjct: 247 VLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRD 306

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV WN MISG+++H    E + LFE+M+  G+ PN  T++ VL+AC H G+ + G   F+
Sbjct: 307 VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFE 366

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + + P V HYSCM+D+L RAG +  A D I +MPF+   S +G+LLA+CR Y+NL
Sbjct: 367 GMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNL 426

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           E AE+AA +L   +P +AG ++ L+NIYA   +W++V+R R+ ++D+ V K    SW+EI
Sbjct: 427 EFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEI 486

Query: 482 KG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           KG         R HP++  I+ KL +L E MK++GY P+ +  LHDV+++ K ++L+ HS
Sbjct: 487 KGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHS 546

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+    G+ +RI KNLR+CGDCH+  K  S I  RE I+RD  RFHHF  G 
Sbjct: 547 EKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGH 606

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 607 CSCDDYW 613


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 346/589 (58%), Gaps = 29/589 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S +   L +C+       G++ H+ I   G  ++ L +N ++  Y +CG +  ARKVFD 
Sbjct: 248 SAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDA 307

Query: 94  MPQ--RCIVSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSEFTVSSVLCACAAKRD 150
           M +  R +VSWN ++ +Y  N R ++A+ L+  M LR  K  Y      S+L AC++  D
Sbjct: 308 MDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRADKVTYV-----SLLSACSSAED 362

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           V   + LH   +   +++NV VG AL+ +YAKCG  ++A  VF+ M +R+ ++W+++++ 
Sbjct: 363 VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISA 422

Query: 211 FVQNELYEEALILFRRAQVLGLEYN---------QFTISSVICACAGLAALIQGKQVHAV 261
           +V+  L  EA  LF+  Q+L LE N              +++ ACA ++AL QGK V   
Sbjct: 423 YVRRRLVAEACHLFQ--QMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQ 480

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVE 320
               G  S+    +++V++Y KCG + +   +F G+    +V LWN MI+ +++  +S E
Sbjct: 481 AASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHE 540

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH-NVLPNVFHYSCM 379
            + LF +M+  G+ P+  +++S+L ACSH G+ ++GKSYF  M  ++ NV   + H+ C+
Sbjct: 541 ALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCV 600

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
            D+LGR G + EA + +  +P    A  W SLLA+CRN+R+L+ A+  A +L  +EP  A
Sbjct: 601 ADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCA 660

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIA 491
             ++ LSNIYA  ++W  VA+ RK + +  VKKE+  S +EI         G   HPR  
Sbjct: 661 TGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNR 720

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           EI  +L KL  +MK+ GY P+T+  LH V++  K+ LL  HSE+LA+  GL+    G P+
Sbjct: 721 EIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPL 780

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+ KNLR+C DCH+  K  S+IAGR+ +VRD  RFH F +G CSC D+W
Sbjct: 781 RVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 205/405 (50%), Gaps = 10/405 (2%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL-NNDTLTSN 72
           +S  +SA+      A   E +T    LQ CAR +A   G+  H+  +   L   + +  N
Sbjct: 24  RSDIASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGN 83

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            +++ Y+ C     A+  FD + QR + SW  ++ ++  +G+ +E +     M ++G  P
Sbjct: 84  HIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRP 143

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
               T  + L +C     + +  ++H   + + ++ +  V  ALL++Y KCG +S A RV
Sbjct: 144 -DAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRV 202

Query: 193 FESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           F  M   RN ++WS M      +    EAL  FR   +LG++  +  + +++ AC+  A 
Sbjct: 203 FAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPAL 262

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMI 309
           +  G+ +H+ +  +GF S +  A++++ MY +CG V +A  VF  ++E  ++VV WN M+
Sbjct: 263 VQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 322

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           S +  + R  + + L+++MQ   L  ++ TY+S+LSACS    V  G+     +V    +
Sbjct: 323 SAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVND-EL 378

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
             NV   + ++ +  + G   EA  +   M   +  S W +++++
Sbjct: 379 EKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIIS-WTTIISA 422


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/581 (38%), Positives = 341/581 (58%), Gaps = 10/581 (1%)

Query: 29  NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
           N  +  T  + L+ CA       GKV H +++   L++D      L+N Y+ CG +  AR
Sbjct: 75  NVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSAR 134

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            +F+ M  R  V W ++I  Y  N    EA+ L+  M  +G +P  E T+++++ ACA  
Sbjct: 135 FLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSP-DEVTMATLVSACAEL 193

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           +D+    +LH    +  M     +G+AL+++YAKCG +  A +VF+ + +++   WS+++
Sbjct: 194 KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALI 253

Query: 209 AGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            G+V+N    EAL LFR  A    +  N+ TI +VI ACA L  L  G+ VH  + +T  
Sbjct: 254 FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK 313

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
           G ++   +SL+DM++KCG +  A  +F  +  K+++ WN+M++G + H    E +  F  
Sbjct: 314 GHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHL 373

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQ   L P+E T+I VL+ACSH G+V++GK  F  +   + V     HY CM+D+L RAG
Sbjct: 374 MQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAG 433

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
           L+ EA + I  MP     ++WGS+L +CR Y NLEL E AA+ L  +EP N G ++LLSN
Sbjct: 434 LLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSN 493

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEK 499
           IYA  + W EV + R+L+ +  ++K    S V I         G  +HP IAEI   L +
Sbjct: 494 IYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQ 553

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           + E++K +GY  +T   L +++D++K+E +  HSEKLAL +GL+    G  I I+KNLR+
Sbjct: 554 VREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRV 613

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCH+ +K  S+I  R+  +RD NRFHHF +GSCSC D+W
Sbjct: 614 CSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 186/345 (53%), Gaps = 11/345 (3%)

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +++WN+++ ++  +   + A+  +  ML   +     FT  S+L  CA   +    K LH
Sbjct: 43  VLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLH 102

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +K  +  ++++ T LL++YA CG +  A  +FE M  RN+V W+SM++G+++N    
Sbjct: 103 GQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPN 162

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL+L+++ +  G   ++ T+++++ ACA L  L  G ++H+ + +          S+LV
Sbjct: 163 EALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALV 222

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNE 337
           +MYAKCG +  A  VF  + +K+V  W+ +I G+ ++ RS E + LF ++   + + PNE
Sbjct: 223 NMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNE 282

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMV---KQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            T ++V+SAC+ +G +E G+   D +    K H+V  N    + +ID+  + G I  A  
Sbjct: 283 VTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN----NSLIDMFSKCGDIDAAKR 338

Query: 395 LILNMPFDATASMWGSLL--ASCRNYRNLELAEIAAKQLFGMEPD 437
           +  +M +    S W S++   +        LA+    Q   ++PD
Sbjct: 339 IFDSMSYKDLIS-WNSMVNGLALHGLGREALAQFHLMQTTDLQPD 382


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/607 (37%), Positives = 344/607 (56%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T    L+SCA+ +A   G+  H  ++ +G   D      LI+ Y++ G            
Sbjct: 68  TFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRS 127

Query: 83  ----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                     LI+G         A+++FDE+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 128 SHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFK 187

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ +VL ACA  R V   +Q+H +        N+ +  AL+D+Y+KC
Sbjct: 188 EMMKTNVRP-DEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC 246

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +FE +  ++ V+W++++ G+    LY+EAL+LF+     G   N  TI S++
Sbjct: 247 GQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSIL 306

Query: 244 CACAGLAALIQGKQVHAVLCKT--GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K      +     +SL+DMYAKCG +  A+ VF+ +  K+
Sbjct: 307 PACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 366

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     LF +M++ G+ P++ T++ +LSACSH G ++ G+  F 
Sbjct: 367 LSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFK 426

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + +++ P + HY CMID+LG +GL  EA ++I  MP +    +W SLL +CR + NL
Sbjct: 427 SMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNL 486

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ELAE  A+ L  +EP+N G+++LLSNIYA    W+EVA+ R L+    +KK    S +EI
Sbjct: 487 ELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEI 546

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HHS
Sbjct: 547 DSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 606

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 607 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGV 666

Query: 594 CSCWDFW 600
           CSC DFW
Sbjct: 667 CSCNDFW 673



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 201/388 (51%), Gaps = 40/388 (10%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  VF  + +   + WNT++  Y  +     A+ L++ M+  G  P S +T   +L +CA
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNS-YTFPFLLKSCA 77

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV-------------- 192
             +   E +Q+H   LK   + +++V T+L+ +YA+ G + DA +V              
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 193 -----------------FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
                            F+ +P ++ V+W++M++G+ +   Y+EAL LF+      +  +
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           + T+ +V+ ACA   ++  G+QVH+ +   GFGSN+   ++L+D+Y+KCG V  A  +F 
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           G+  K+VV WNT+I G++      E ++LF++M ++G  PN+ T +S+L AC+H+G ++ 
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 356 GK---SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           G+    Y D  +K     P++   + +ID+  + G I  A+  + N     + S W +++
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSL--RTSLIDMYAKCGDIEAAHQ-VFNSMLHKSLSSWNAMI 374

Query: 413 --ASCRNYRNLELAEIAAKQLFGMEPDN 438
              +     N      +  +  G+EPD+
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNGIEPDD 402


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 332/559 (59%), Gaps = 10/559 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H+++   G +  T+  N L++ Y+KCG +  AR +F+ + +R +VSW+ +IG+Y  
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA--MDRN 169
           +GR QEA+ LF  M  +G+   +  T + V  AC    D+ + +++H  A+ +      N
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
             +  ALL++Y +CG + +A +VF++M   +  +W+SM+    +N    EAL LF R  +
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNL 183

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G+     T++SV+ ACA   AL  GKQ+H+ L  +GF S++ A ++L+DMYAKCG +  
Sbjct: 184 EGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLEC 243

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           +  VF+ +E +N V W  MI+  ++H +  E + LF++M   G+  +  T+I VL ACSH
Sbjct: 244 SSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSH 303

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G++++   +F  MV+ + + P   HY   +D +GRAG + +A +LI +MPF      W 
Sbjct: 304 AGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWK 363

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL +CR +   E A   A+ L  + P+++  + LL N+YAA  R+ +  R RK + D  
Sbjct: 364 TLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRG 423

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           +KK   KS++E+K        G R HP   EI  +LEKL   M++ GY P T+  LH V 
Sbjct: 424 LKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVN 483

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K++L+  HSEKLA+ FGL+   PG P+ I+KNLR+C DCH+  K  ++I  R  +VR
Sbjct: 484 EEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVR 543

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D +RFHHF +G CSC D+W
Sbjct: 544 DTHRFHHFEDGQCSCKDYW 562



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 133/265 (50%), Gaps = 5/265 (1%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E +++H         R       L+ +YAKCG + +A  +F  + ER  V+WS+M+  + 
Sbjct: 3   EGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 213 QNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGS 269
            +   +EAL+LF R +  G +E N  T + V  AC  +  L QG+++HA+   +G    S
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           N    ++L++MY +CG + +A  VF  ++  +   W +MI+  + +   +E + LF +M 
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ P   T  SVL+AC+  G ++ GK     +        +V   + ++D+  + G +
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKCGSL 241

Query: 390 HEAYDLILNMPFDATASMWGSLLAS 414
             +  +   M    + S W +++A+
Sbjct: 242 ECSSKVFTAMETRNSVS-WTAMIAA 265



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 7/181 (3%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           +G+++H+ L   GF     A + LV MYAKCGC+ +A  +F+GI E+ VV W+ MI  ++
Sbjct: 3   EGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 314 RHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDL-MVKQHNVLP 371
            H R  E ++LF +M+  G + PN  T+  V +AC  I  +E+G+    L M        
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
           N    + ++++  R G + EA  +   M      S W S++ +C    N EL E  A +L
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFS-WTSMITAC--TENCELLE--ALEL 177

Query: 432 F 432
           F
Sbjct: 178 F 178



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 3/176 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +CA   A   GK  H+++   G ++  L    L++ Y+KCG +  + KVF  M
Sbjct: 192 TLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAM 251

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSW  +I +   +G+  EA+ LF  M  EG    +  T   VL AC+    + E 
Sbjct: 252 ETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADAT-TFICVLRACSHAGLIKES 310

Query: 155 KQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE-VTWSSMV 208
            +  H      A+          LD   + G + DA  +  SMP   E +TW +++
Sbjct: 311 LEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLL 366


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 338/558 (60%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++      +   +N L++FYSK   +  A K+F EMP+   +S+N ++  Y  
Sbjct: 318 GQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAW 377

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NGR +E++ LF  +   G      F  +++L   A   ++   +Q+H   +       + 
Sbjct: 378 NGRVKESLELFKELQFTG-FDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEIL 436

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG +L+D+YAKCG   +A+R+F  +  ++ V W++M++ +VQ  L+E+ L LF   Q   
Sbjct: 437 VGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAK 496

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  +  T +S++ ACA LA+L  GKQ+H+ +  +G+ SN+F+ S+LVDMYAKCG + DA 
Sbjct: 497 IGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDAL 556

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  +  +N V WN +IS ++++      + LFE+M ++GL P+  + +S+L ACSH G
Sbjct: 557 QMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCG 616

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+G  YFD M + + ++P   HY+  ID+L R G   EA  L+  MPF+    MW S+
Sbjct: 617 LVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSV 676

Query: 412 LASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           L SC  ++N ELA+ AA QLF M+   +A  ++ +SNIYAA   W+ V + +K +R+  V
Sbjct: 677 LNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGV 736

Query: 471 KKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           KK  + SWVEIK K        + HP++ EI  KL++L E+M K GYKP++   LH+V++
Sbjct: 737 KKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDE 796

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K E L +HSE++A+ F L+    G PI +MKNLR C DCH+ +K  S+I  RE  VRD
Sbjct: 797 EVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRD 856

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFHHF +G C+C D+W
Sbjct: 857 SSRFHHFRDGFCTCRDYW 874



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 195/359 (54%), Gaps = 3/359 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H+ +I +G ++  + SN L++ Y K   +  A ++F+++P+R  V++N ++  Y+  G  
Sbjct: 221 HSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFN 280

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ LF  M   G  P +EFT +++L A     D+   +Q+H F +K     NVFV  A
Sbjct: 281 REAINLFFKMQEVGYRP-TEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANA 339

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+K   + +AS++F  MPE + ++++ +V  +  N   +E+L LF+  Q  G +  
Sbjct: 340 LLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRR 399

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            F  ++++   A    L  G+Q+H+    T   S +   +SLVDMYAKCG   +A  +FS
Sbjct: 400 NFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFS 459

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  ++ V W  MIS + +     + + LF +MQ+A +  +  TY S++ AC+ +  +  
Sbjct: 460 DLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTL 519

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           GK     ++     + NVF  S ++D+  + G I +A  +   MP   + S W +L+++
Sbjct: 520 GKQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVS-WNALISA 576



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 200/418 (47%), Gaps = 39/418 (9%)

Query: 33  LSTLQATLQSCARE-----RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA 87
           LS +   ++ C R       AP       A II  G N +T  SN L+  + + G ++GA
Sbjct: 61  LSLMNNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGA 120

Query: 88  RKVFDEMP-------------------------------QRCIVSWNTIIGSYTTNGREQ 116
           RK+FDEMP                               QR  V+W  +IG Y  N + +
Sbjct: 121 RKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFR 180

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           EA  LFI M R G  P    +++++L        V E +Q+H   +K   D  + V  +L
Sbjct: 181 EAFGLFIEMGRHGIDP-DHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSL 239

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           LD Y K   +  A ++F  +PER+ VT+++++ G+ +     EA+ LF + Q +G    +
Sbjct: 240 LDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTE 299

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           FT ++++ A   L  +  G+QVH  + K  F  N+F A++L+D Y+K   VV+A  +F  
Sbjct: 300 FTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYE 359

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           + E + + +N +++ ++ + R  E + LF+++Q  G       + ++LS  +    ++ G
Sbjct: 360 MPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIG 419

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +      +   + +  +   + ++D+  + G   EA  +  ++   ++   W ++++S
Sbjct: 420 RQIHSQTIVT-DAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVP-WTAMISS 475



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
             + +T  + +++CA   +   GK  H+ IIG G  ++  + + L++ Y+KCG I  A +
Sbjct: 498 GADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQ 557

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F EMP R  VSWN +I +Y  NG     + LF  M+R G  P S  ++ S+LCAC+   
Sbjct: 558 MFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDS-VSLLSILCACSHCG 616

Query: 150 DVFECKQLH---VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            V E  Q         K    +  +  T  +D+  + G   +A ++   MP E +E+ WS
Sbjct: 617 LVEEGLQYFDSMTRIYKLVPKKEHYAST--IDMLCRGGRFDEAEKLMAQMPFEPDEIMWS 674

Query: 206 SMV 208
           S++
Sbjct: 675 SVL 677



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 24/229 (10%)

Query: 222 ILFRRAQVLGLEYNQFTIS---SVICACA-GLAALIQGKQVH----AVLCKTGFGSNMFA 273
           ++F  A   G +  + T+S   ++I  C   L   +   + H    A + KTGF  N + 
Sbjct: 44  LIFTNAGHFGSKQYELTLSLMNNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYR 103

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           ++ LV  + + G +  A  +F  +  KN+   NTMI G+ +     E   LF+ M Q   
Sbjct: 104 SNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQ--- 160

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVK--QHNVLPNVFHYSCMIDILGRAGLIHE 391
               +T ++            + +  F L ++  +H + P+    + ++        ++E
Sbjct: 161 ----RTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNE 216

Query: 392 AYDL---ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
              +   ++ + +D+T  +  SLL S    R+L L    A QLF   P+
Sbjct: 217 VRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGL----AFQLFNDIPE 261


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 322/542 (59%), Gaps = 41/542 (7%)

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           + SWN++I     +G   EA+  F +M +    P +  T    + +C+A  D+   +Q H
Sbjct: 41  VFSWNSVIAELARSGDSVEALRAFSSMRKLSLKP-NRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE--- 215
             AL    + ++FV +AL+D+Y+KCG + DA  +F+ +  RN V+W+SM+ G+VQN+   
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 216 ----------------------------LYEEALILFRRAQVLG-LEYNQFTISSVICAC 246
                                       +  E++ +F R    G + YN  T+S+V+ AC
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A   +   GK +H  + K G  SN+F  +S++DMY KCG V  A   F  + EKNV  W+
Sbjct: 220 AHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWS 279

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            M++G+  H  + E + +F +M  AG+ PN  T++SVL+ACSH G++E+G  +F  M  +
Sbjct: 280 AMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHE 339

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
            +V P V HY CM+D+LGRAG + EA+DLI  M       +WG+LL +CR ++N++L EI
Sbjct: 340 FDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEI 399

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-- 484
           +A++LF ++P N G ++LLSNIYA   RWE+V R R L+++S + K    S V+IKG+  
Sbjct: 400 SARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVH 459

Query: 485 ------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                 R HP+  +IY  LEKL  +++++GY P+    LHDV    K+ +L  HSEKLA+
Sbjct: 460 VFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAV 519

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FG+M   PG  I I+KNLR+CGDCH+ +KF S+I  RE +VRD  RFHHF +G CSC D
Sbjct: 520 AFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGD 579

Query: 599 FW 600
           +W
Sbjct: 580 YW 581



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 186/410 (45%), Gaps = 52/410 (12%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           ++FSS    S   N      ST    ++SC+       G+  H + +  G   D   S+ 
Sbjct: 62  RAFSSMRKLSLKPNR-----STFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSA 116

Query: 74  LINFYSKCGLISGARKVFDE-------------------------------MPQRCIVSW 102
           L++ YSKCG +  AR +FDE                               M +R ++SW
Sbjct: 117 LVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISW 176

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFAL 162
           N+II  Y  NG   E++ +F  M+++G+  Y+  T+S+VL ACA        K +H   +
Sbjct: 177 NSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVI 236

Query: 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
           K  ++ NVFVGT+++D+Y KCG +  A + F+ M E+N  +WS+MVAG+  +   +EAL 
Sbjct: 237 KMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALE 296

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLCKTGFGSNMFAASSLVDMY 281
           +F    + G++ N  T  SV+ AC+    L +G     A+  +      +     +VD+ 
Sbjct: 297 VFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLL 356

Query: 282 AKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHAR----SVEVMILFEKMQQAGLHPN 336
            + G + +A+ +  G++   + V+W  ++     H       +    LFE      L P 
Sbjct: 357 GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE------LDPK 410

Query: 337 EQTYISVLSAC-SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
              Y  +LS   +  G  E  +    LM     V P  F    ++DI GR
Sbjct: 411 NCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGF---SLVDIKGR 457



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 36/230 (15%)

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N  +W+S++A   ++    EAL  F   + L L+ N+ T    I +C+ L  L  G+Q H
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF--------------------------- 292
                 GF  ++F +S+LVDMY+KCG + DA                             
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 293 ----VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSAC 347
               VF G+ E++V+ WN++I+ ++++  S E M +F +M + G ++ N  T  +VL AC
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL---GRAGLIHEAYD 394
           +H G    GK   D ++K   +  NVF  + +ID+    G+  +  +A+D
Sbjct: 220 AHSGSQRLGKCIHDQVIKM-GLESNVFVGTSIIDMYCKCGKVEMARKAFD 268



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           +++ NV  WN++I+  +R   SVE +  F  M++  L PN  T+   + +CS +  +  G
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 357 KSYFDLMVKQHNVL----PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +        Q  ++    P++F  S ++D+  + G + +A  L   +      S W S++
Sbjct: 96  RQ-----AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS-WTSMI 149

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN-RRWEEVARARKLIRDSEV 470
                Y   + A  A +   GM   +  +   +  +YA N    E +    ++++D E+
Sbjct: 150 TG---YVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 205


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/560 (38%), Positives = 334/560 (59%), Gaps = 16/560 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++    +++   +N L++FYSKC  +   +K+F EM +R  VS+N +I  Y  
Sbjct: 260 GRQVHG-LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAW 318

Query: 112 NGREQEAVALFINMLREGKT---PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           N       ++ + + RE ++          +S+L    +   +   KQ+H   +   +  
Sbjct: 319 N----RCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSS 374

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
              VG AL+D+Y+KCG++  A   F +  ++  V+W++M+ G VQN   EEAL LF   +
Sbjct: 375 EDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMR 434

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             GL  ++ T SS I A + LA +  G+Q+H+ L ++G  S++F+ S+L+DMY KCGC+ 
Sbjct: 435 RAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLD 494

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A   F  + E+N + WN +IS ++ + ++   + +FE M   G  P+  T++SVLSACS
Sbjct: 495 EALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACS 554

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           H G+ E+   YF+LM  ++ + P   HYSC+ID LGR G   +  +++  MPF+    +W
Sbjct: 555 HNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIW 614

Query: 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
            S+L SCR + N +LA +AA++LF M   +A  +++LSNI+A   +WE+ A  +K++RD 
Sbjct: 615 SSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDR 674

Query: 469 EVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            ++KE   SWVE+K K        + +P I EI  +LE+L +EM K GYKP+T   L  V
Sbjct: 675 GLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQV 734

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           +D  K E L +HSE+LA+ F L+   PG PIR+MKNL  C DCHS +K  S+I  R+ IV
Sbjct: 735 DDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIV 794

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD +RFHHF +G CSC D+W
Sbjct: 795 RDSSRFHHFKDGFCSCGDYW 814



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 210/408 (51%), Gaps = 32/408 (7%)

Query: 52  GKVCHAKII--GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIG 107
           G++  A+ +   M   N+  + N +++ YS+ G +S A  +F   P   R  V+W  +IG
Sbjct: 48  GRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIG 107

Query: 108 SYTT--NGREQEAVALFINMLREGKTPYSEFTVSSVL---CACAAKRDVFECKQLHVFAL 162
           ++ +    R  +AV+LF +MLREG  P    TV++VL    A            LH FAL
Sbjct: 108 AFASAPGARASDAVSLFRDMLREGVAP-DRVTVATVLNLPPASGGTAAAIIIASLHPFAL 166

Query: 163 KAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
           K  +   NV V   LLD Y K GL++ A RVF+ MP R+ VT+++M+ G  +   + EAL
Sbjct: 167 KLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEAL 226

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            LF   +  GL   +FT S+V+    G+  L  G+QVH ++ +    SN+F  +SL+D Y
Sbjct: 227 DLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARAT-SSNVFVNNSLLDFY 285

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           +KC C+ +   +F  + E++ V +N MI+G++ +  +  V+ LF +MQ          Y 
Sbjct: 286 SKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYA 345

Query: 342 SVLS---ACSHIGMVEKGKSYFDLM-VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
           S+LS   +  HIG+ ++  +   L+ +   +++ N      +ID+  + G++  A    +
Sbjct: 346 SLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNA-----LIDMYSKCGMLDAAKTNFI 400

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF------GMEPDNA 439
           N   D T   W +++  C   +N +  E  A QLF      G+ PD A
Sbjct: 401 NKN-DKTGVSWTAMITGC--VQNGQQEE--ALQLFCGMRRAGLSPDRA 443



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 3/181 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           + + +T  +T+++ +       G+  H+ +I  G  +   + + L++ Y+KCG +  A +
Sbjct: 439 SPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQ 498

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
            FDEMP+R  +SWN +I +Y   G+ + A+ +F  ML  G  P S  T  SVL AC+   
Sbjct: 499 TFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDS-VTFLSVLSACSHNG 557

Query: 150 DVFEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
              EC K   +   +  +       + ++D   + G       +   MP E + + WSS+
Sbjct: 558 LAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSI 617

Query: 208 V 208
           +
Sbjct: 618 L 618



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 42/278 (15%)

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE-------------------- 201
           +K   D   +    LL      G ++ A  +F+ MP RN                     
Sbjct: 26  VKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAA 85

Query: 202 --------------VTWSSMVAGFVQ--NELYEEALILFRRAQVLGLEYNQFTISSVI-- 243
                         VTW+ M+  F         +A+ LFR     G+  ++ T+++V+  
Sbjct: 86  HHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNL 145

Query: 244 -CACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
             A  G AA I    +H    K G   SN+   ++L+D Y K G +  A  VF  +  ++
Sbjct: 146 PPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRD 205

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
            V +N M+ G S+     E + LF  M++ GL     T+ +VL+  + +G +  G+    
Sbjct: 206 SVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHG 265

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           L+ +  +   NVF  + ++D   +   + E   L   M
Sbjct: 266 LVARATS--SNVFVNNSLLDFYSKCDCLDEMKKLFHEM 301


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 337/596 (56%), Gaps = 47/596 (7%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSK---CGLISGARKVFDEMPQRCIVSWNTIIG 107
           + K  HA+I    L   +     L+   +      L S  R +F ++      +W  +I 
Sbjct: 23  QAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTALIR 82

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK-AAM 166
           +Y   G   +A++ + +M +   +P S FT S++  ACAA R      QLH   L     
Sbjct: 83  AYALRGPLSQALSFYSSMRKRRVSPIS-FTFSALFSACAAVRHSALGAQLHAQTLLLGGF 141

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERN-------------------------- 200
             +++V  A++D+Y KCG +  A  VF+ MPER+                          
Sbjct: 142 SSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDG 201

Query: 201 -----EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
                 VTW++MV G+ QN +  +AL +FRR +  G+E ++ T+  VI ACA L A    
Sbjct: 202 LPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYA 261

Query: 256 KQVHAVLCKTGFG--SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
             +  +   +GFG   N+   S+L+DMY+KCG V +AY VF G+ E+NV  +++MI GF+
Sbjct: 262 NWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFA 321

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H R+   + LF  M + G+ PN  T++ VL+ACSH G+V++G+  F  M K + V P  
Sbjct: 322 IHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTA 381

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
             Y+CM D+L RAG + +A  L+  MP ++  ++WG+LL +   + N ++AEIA+K+LF 
Sbjct: 382 ELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFE 441

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---------GK 484
           +EPDN GN+LLLSN YA+  RW++V++ RKL+R+  +KK    SWVE K         G 
Sbjct: 442 LEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGD 501

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
            +HP+I EI  +L  L+E +K +GY+P      + + D  K+ LL+ HSEKLAL FGL+ 
Sbjct: 502 VSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLS 561

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              G  I+IMKNLRIC DCH  M  AS++ GR+ +VRD  RFHHF NG+CSC +FW
Sbjct: 562 TDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/575 (37%), Positives = 326/575 (56%), Gaps = 45/575 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L + A+      GK  H  II      +    N L + Y+KCG I  AR +FD +
Sbjct: 157 TIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCL 216

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +VSWN +I  Y  NG+ ++ + L   M   G  P  + T+S+++ A          
Sbjct: 217 TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP-DQVTMSTIIAA---------- 265

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                                    Y +CG + +A RVF    E++ V W++M+ G+ +N
Sbjct: 266 -------------------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKN 300

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+AL+LF    +  +E + +T+SSV+ +CA LA+L  G+ VH      G  +N+  +
Sbjct: 301 GREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS 360

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S+L+DMY+KCG + DA  VF+ +  +NVV WN MI G +++    + + LFE M Q    
Sbjct: 361 SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFK 420

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T+I +LSAC H   +E+G+ YFD +  QH + P + HY+CM+++LGR G I +A  
Sbjct: 421 PDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVA 480

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI NM  D    +W +LL+ C    ++  AE+AA+ LF ++P  A  +++LSN+YA+  R
Sbjct: 481 LIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGR 540

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W++VA  R L++   VKK    SW+EI  +        R HP   +IY KL  L+ ++++
Sbjct: 541 WKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQE 600

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV-PIRIMKNLRICGDCHS 565
            G+ P T   LHDV +  K + +  HSEKLAL FGL+    G+ PIRI+KN+RIC DCH 
Sbjct: 601 EGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHE 660

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           FMKFASRI GR+ I+RD NRFHHF+ G CSC D W
Sbjct: 661 FMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 116/195 (59%)

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
           + R+ F   ALL  YAK G I +    F+ MP R+ V++++ +AGF  N   +E+L LF+
Sbjct: 85  LKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
           R Q  G E  ++TI S++ A A L  L  GKQ+H  +    F  N+F  ++L DMYAKCG
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCG 204

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            +  A ++F  + +KN+V WN MISG++++ +  + + L  +M+ +G  P++ T  ++++
Sbjct: 205 EIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIA 264

Query: 346 ACSHIGMVEKGKSYF 360
           A    G V++ +  F
Sbjct: 265 AYCQCGRVDEARRVF 279


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/558 (37%), Positives = 340/558 (60%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++      +    N L+++YSK   +    K+F EMP+   +S+N +I SY  
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAW 319

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG+ +E+  LF   L+  +    +F  +++L    +  ++   +Q+H  A+    +    
Sbjct: 320 NGQFKESFDLF-RKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR 378

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  AL+D+YAKC    +A ++F+++  ++ V W++M++ +VQ   +EE + +F   +  G
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTG 438

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  +Q T +S++ ACA LA++  G+Q+H++L ++GF SN+++ S+L+D YAKCGC+ DA 
Sbjct: 439 VPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAI 498

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F  + E+N V WN +IS ++++      +  F++M Q+G  P+  +++SVLSACSH G
Sbjct: 499 KSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCG 558

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            VE+   +F+ M + + V P   HY+ M+D+L R G   EA  L+  MPF+ +  MW S+
Sbjct: 559 FVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSV 618

Query: 412 LASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           L SCR ++N ELA+ AA +LF ME   +A  ++ +SNIYA   +W+ VA+ +K +RD  V
Sbjct: 619 LNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGV 678

Query: 471 KKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           +K  + SWVEIK          ++HP + +I  K+  L +EM+K GYKP+T   LHDV++
Sbjct: 679 RKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDE 738

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K E L +HSE+ A+ F LM    G PI +MKNLR C DCH+ +K  S+I  RE IVRD
Sbjct: 739 VIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRD 798

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFHHF +G CSC D+W
Sbjct: 799 SSRFHHFKDGVCSCGDYW 816



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 197/385 (51%), Gaps = 5/385 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  +I +G   + +  N L++ Y K   +  A ++F  M  +  V++N+++  Y+  G  
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ LF+ +   G  P S+FT +++L A     D    +Q+H F LK     NVFVG A
Sbjct: 223 EEAIELFLELHNSGIKP-SDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNA 281

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+K   + +  ++F  MPE + ++++ ++  +  N  ++E+  LFR+ Q    +  
Sbjct: 282 LLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           QF  ++++        L  G+Q+H      G        ++LVDMYAKC    +A  +F 
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFD 401

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I  K+ V W  MIS + +  +  E + +F  M++ G+  ++ T+ S+L AC+++  +  
Sbjct: 402 NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISL 461

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+    L+++    + NV+  S ++D   + G + +A      MP   + S W +L+++ 
Sbjct: 462 GRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVS-WNALISAY 519

Query: 416 RNYRNLELAEIAAKQLF--GMEPDN 438
               N++    + +Q+   G +PD+
Sbjct: 520 AQNGNVDGTLNSFQQMIQSGYKPDS 544



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 157/296 (53%), Gaps = 2/296 (0%)

Query: 51  RGKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           RG + HA ++       +T++ N++I+ + K G +S AR++FD M +R  VSW  +IG Y
Sbjct: 56  RGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGY 115

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             + + +EA  L+ +M R G  P    T+ ++L             Q+H   +K   + N
Sbjct: 116 LQSNQSKEAFRLYADMRRGGIEP-DYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYN 174

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + V  +L+D Y K   +  AS++F+ M  ++ VT++S++ G+    L EEA+ LF     
Sbjct: 175 LMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHN 234

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G++ + FT ++++ A  GL     G+QVH  + KT F  N+F  ++L+D Y+K   V +
Sbjct: 235 SGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDE 294

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
              +F  + E + + +N +I+ ++ + +  E   LF K+Q       +  + ++LS
Sbjct: 295 VGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLS 350



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 119/233 (51%), Gaps = 1/233 (0%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +N      ++  + K G +S A  +F+ M ER  V+W+ ++ G++Q+   +EA  L+   
Sbjct: 72  KNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADM 131

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  G+E +  T+ +++     L       Q+H  + K G+  N+   +SLVD Y K  C+
Sbjct: 132 RRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCL 191

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  +F  +  K+ V +N++++G+S    + E + LF ++  +G+ P++ T+ ++LSA 
Sbjct: 192 YLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAA 251

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
             +   + G+     ++K  N + NVF  + ++D   +   + E   L   MP
Sbjct: 252 VGLDDTKFGQQVHGFVLKT-NFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMP 303



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  + L++CA   +   G+  H+ +I  G  ++  + + L++ Y+KCG ++ A K F E
Sbjct: 444 ATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGE 503

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R  VSWN +I +Y  NG     +  F  M++ G  P S  +  SVL AC+    V E
Sbjct: 504 MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDS-VSFLSVLSACSHCGFVEE 562

Query: 154 C-----KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
                     ++ +    +      T+++DV  + G   +A ++   MP E +E+ WSS+
Sbjct: 563 ALWHFNSMTQIYEVTPKREHY----TSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSV 618

Query: 208 V 208
           +
Sbjct: 619 L 619


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 343/577 (59%), Gaps = 10/577 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ ++ +T+++C +      GK  H  +IG G   DT+  NILI+ Y+KCG +  A++VF
Sbjct: 321 DMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVF 380

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D    +  V+WN++I  YT +G  +E +  F  M  E K     F +  +L   +   D+
Sbjct: 381 DTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVL--LLSIFSQLADI 438

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            + + +H   +K   +  + +G +LLDVYAKCG + D  +VF  M   + ++W++++A  
Sbjct: 439 NQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASS 498

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V  +       +    +  GL  ++ T+  ++  C+ LA   QGK++H  + K+GF SN+
Sbjct: 499 VHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNV 558

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++L++MY+KCG + +   VF  ++EK+VV W  +IS F  +    + +  F+ M+ +
Sbjct: 559 PIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELS 618

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ P+   +I+ + ACSH GMV++G  +FD M   +N+ P + HY+C++D+L R+GL+ +
Sbjct: 619 GVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQ 678

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A + IL+MP    AS+WG+LL++CR   N  +A+  +K++  +  D+ G ++L+SNIYA 
Sbjct: 679 AEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYAT 738

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK----RNHPRIAEIYSK----LEKLVEE 503
             +W++V   R  ++   +KKE   SW+EI+ +    R   +  E Y K    LE LV  
Sbjct: 739 LGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRL 798

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M K GY  + +  LHDVE+  K+++L  HSE+LA+ FGL+   PG P+ +MKNLR+CGDC
Sbjct: 799 MAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDC 858

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+  K+ ++I  RE +VRD NRFH F +G+CSC D W
Sbjct: 859 HTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/436 (29%), Positives = 214/436 (49%), Gaps = 25/436 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + + SCAR      G + H   + MG  +D    N LI+ YS+   +  AR VF+EM
Sbjct: 123 TFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEM 182

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  VSWN++I  Y +NG  ++A+ ++      G  P   FT+SSVL AC +   V E 
Sbjct: 183 SNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVP-DCFTMSSVLLACGSLMAVKEG 241

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H    K  +  +V +G  LL +Y K   + +A RVF  M  ++ VTW++M+ G+ Q 
Sbjct: 242 VAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQL 301

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +E ++ LF    + G   +  +I+S I AC     L  GK VH  L  +GF  +  A 
Sbjct: 302 GRHEASVKLFMD-MIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC 360

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L+DMYAKCG ++ A  VF   + K+ V WN++I+G+++     E +  F KM +    
Sbjct: 361 NILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERK 419

Query: 335 PNEQTYISVLSACSHIGMVEKGKSY--------FDLMVKQHNVLPNVFHYSCMIDILGRA 386
           P+  T++ +LS  S +  + +G+          F+  +   N L +V+     +D L + 
Sbjct: 420 PDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKV 479

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRN--LELAEIAAKQLFGMEPDNAG--NH 442
                A+D+I           W +++AS  ++ +  +    I   +  G+ PD A     
Sbjct: 480 FSYMSAHDII----------SWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGI 529

Query: 443 LLLSNIYAANRRWEEV 458
           L + ++ A  R+ +E+
Sbjct: 530 LPMCSLLAVRRQGKEI 545



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 175/325 (53%), Gaps = 6/325 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+L  TL S A+    +R    H+ II  GL+   + S  LI+ Y++      +  VF  
Sbjct: 23  SSLLKTLSS-AKNTPQLR--TVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRS 79

Query: 94  M-PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           + P   +  WN+II + T NG   +A+  +  M RE K     FT  SV+ +CA   D+ 
Sbjct: 80  ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARILDLE 138

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
               +H  A++   + ++++G AL+D+Y++   + +A  VFE M  R+ V+W+S+++G+ 
Sbjct: 139 LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYC 198

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            N  +E+AL ++ + ++ G+  + FT+SSV+ AC  L A+ +G  VH V+ K G   ++ 
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVI 258

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             + L+ MY K   + +A  VFS +  K+ V WNTMI G+++  R    + LF  M   G
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-G 317

Query: 333 LHPNEQTYISVLSACSHIGMVEKGK 357
             P+  +  S + AC   G ++ GK
Sbjct: 318 FVPDMLSITSTIRACGQSGDLQVGK 342



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
            +F  SS++   +      Q + VH+++  +G   ++  +  L+  YA+    + +  VF
Sbjct: 18  QEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVF 77

Query: 295 SGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
             I    NV LWN++I   + +    + +  + +M++  L P+  T+ SV+++C+ I  +
Sbjct: 78  RSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDL 137

Query: 354 EKG 356
           E G
Sbjct: 138 ELG 140


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/576 (35%), Positives = 341/576 (59%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T    L++C        G+  HA++  +G   D    N LI  Y+KC  +  AR VF+  
Sbjct: 121 TFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGL 180

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            +P+R IVSW  I+ +Y  NG   EA+ +F  M +    P     + SVL A    +D+ 
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKP-DCVALVSVLNAFTCLQDLE 239

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           + + +H   +K  ++    +  +L  +YAKCG ++ A  +F+ M   N + W++M++G+ 
Sbjct: 240 QGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           +N   ++A+ LF       +  +  +I+S I ACA + +L Q + +   + ++ +  ++F
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVF 359

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            +S+L+DM+AKCG V  A  VF    +++VV+W+ MI G+  H ++ E + L+  M++ G
Sbjct: 360 ISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDG 419

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +HPN+ T++ +L AC+H GMV +G  +F+ M   H + P   HY+C+ID+LGRAG + +A
Sbjct: 420 VHPNDVTFLGLLIACNHSGMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQA 478

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y++I  MP     ++WG+LL++C+ +R++EL + AA+QLF ++P N G+++ LSN+YAA 
Sbjct: 479 YEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAA 538

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
           R W+ VA  R  +++  + K+   SWVE++G+        ++HPR  EI  ++E +   +
Sbjct: 539 RLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRL 598

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K+ G+    +  LHD+ D   +E L  HSE++ + +GL+    G  +RI KNLR C +CH
Sbjct: 599 KEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCH 658

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  K  S++ GRE +VRD NRFHHF +G CSC D+W
Sbjct: 659 AATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 206/399 (51%), Gaps = 17/399 (4%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           +++S I S S  A+  + ST +A L+              HA+++ +GL         LI
Sbjct: 13  YTNSGIHSDSFYASLIDSSTHKAQLRQI------------HARLLVLGLQFSGFLITKLI 60

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           +  S  G I+ AR+VFD++P+  +  WN II  Y+ N   Q+A+ ++  M     +P S 
Sbjct: 61  HASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDS- 119

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT   +L AC     +   + +H    +   + +VFV   L+ +YAKC  +  A  VFE 
Sbjct: 120 FTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEG 179

Query: 196 --MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
             +PER  V+W+++V+ + QN    EAL +F + + + ++ +   + SV+ A   L  L 
Sbjct: 180 LPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLE 239

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           QG+ +HA + K G  +      SL  MYAKCG V  A  +F  ++  N++LWN MISG++
Sbjct: 240 QGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           ++  + + + LF +M    + P+  +  S +SAC+ +G +E+ + + D  V + +   +V
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQAR-WMDEYVSRSDYRDDV 358

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           F  S +ID+  + G + E    + +   D    +W +++
Sbjct: 359 FISSALIDMFAKCGSV-ECARSVFDRTLDRDVVVWSAMI 396


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 335/558 (60%), Gaps = 12/558 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H+++I +G   +     ++ N Y KCG + GA    ++M ++  V+   ++  YT 
Sbjct: 211 GKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTK 270

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
             R ++A+ LF  M+ EG      F  S +L ACAA  D++  KQ+H + +K  ++  V 
Sbjct: 271 AARNRDALLLFGKMISEG-VELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVS 329

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VGT L+D Y KC     A + FES+ E N+ +WS+++AG+ Q+  ++ AL +F+  +  G
Sbjct: 330 VGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKG 389

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  N F  +++  AC+ ++ LI G Q+HA   K G  + +   S+++ MY+KCG V  A+
Sbjct: 390 VLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAH 449

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F  I++ + V W  +I   + H ++ E + LF++MQ +G+ PN  T+I +L+ACSH G
Sbjct: 450 QAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSG 509

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +V++GK   D M  ++ V P + HY+CMID+  RAGL+ EA ++I ++PF+     W SL
Sbjct: 510 LVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSL 569

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L  C ++RNLE+  IAA  +F ++P ++  ++++ N+YA   +W+E A+ RK++ +  ++
Sbjct: 570 LGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLR 629

Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHD-LHDVED 522
           KE S SW+ +KGK        R+HP+  +IYSKL++L    KK   +   E + L D  +
Sbjct: 630 KEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTE 689

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
            ++Q  L+ HSE+LA+ +GL+C     PI + KN R C DCH F K  S + GRE +VRD
Sbjct: 690 RKEQ--LLDHSERLAIAYGLICTAADTPIMVFKNTRSCKDCHDFAKRVSIVTGRELVVRD 747

Query: 583 LNRFHHFTNGSCSCWDFW 600
            NRFHH  +G CSC D+W
Sbjct: 748 GNRFHHINSGECSCRDYW 765



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 176/371 (47%), Gaps = 6/371 (1%)

Query: 43  CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSW 102
           C    A   GK+ H ++  M  N++    N ++  Y  C   + A + FD++  + + SW
Sbjct: 102 CGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSW 160

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFA 161
           +TII +YT  GR  EAV LF+ ML  G TP S  ++ S L        + +  KQ+H   
Sbjct: 161 STIISAYTEEGRIDEAVRLFLRMLDLGITPNS--SIFSTLIMSFTDPSMLDLGKQIHSQL 218

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
           ++     N+ + T + ++Y KCG +  A      M  +N V  + ++ G+ +     +AL
Sbjct: 219 IRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDAL 278

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
           +LF +    G+E + F  S ++ ACA L  L  GKQ+H+   K G  S +   + LVD Y
Sbjct: 279 LLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFY 338

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
            KC     A   F  I E N   W+ +I+G+ +  +    + +F+ ++  G+  N   Y 
Sbjct: 339 VKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYT 398

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++  ACS +  +  G       +K+  ++  +   S MI +  + G +  A+   L +  
Sbjct: 399 NIFQACSAVSDLICGAQIHADAIKK-GLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDK 457

Query: 402 DATASMWGSLL 412
             T + W +++
Sbjct: 458 PDTVA-WTAII 467



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 167/332 (50%), Gaps = 8/332 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++CA       GK  H+  I +GL ++      L++FY KC     AR+ F+ + +   
Sbjct: 300 LKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPND 359

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            SW+ +I  Y  +G+   A+ +F   +R      + F  +++  AC+A  D+    Q+H 
Sbjct: 360 FSWSALIAGYCQSGQFDRALEVF-KAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHA 418

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+K  +   +   +A++ +Y+KCG +  A + F ++ + + V W++++     +    E
Sbjct: 419 DAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFE 478

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLV 278
           AL LF+  Q  G+  N  T   ++ AC+    + +GK++  ++  + G    +   + ++
Sbjct: 479 ALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMI 538

Query: 279 DMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEV-MILFEKMQQAGLHP- 335
           D+Y++ G + +A  V   +  E +V+ W +++ G   H R++E+ MI  + + +  L P 
Sbjct: 539 DVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSH-RNLEIGMIAADNIFR--LDPL 595

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           +  TY+ + +  +  G  ++   +  +M +++
Sbjct: 596 DSATYVIMFNLYALAGKWDEAAQFRKMMAERN 627


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 346/589 (58%), Gaps = 29/589 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S +   L +C+       G++ H+ I   G  ++ L +N ++  Y +CG +  ARKVFD 
Sbjct: 161 SAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDA 220

Query: 94  MPQ--RCIVSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSEFTVSSVLCACAAKRD 150
           M +  R +VSWN ++ +Y  N R ++A+ L+  M LR  K  Y      S+L AC++  D
Sbjct: 221 MDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLRPDKVTYV-----SLLSACSSAED 275

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           V   + LH   +   +++NV VG AL+ +YAKCG  ++A  VF+ M +R+ ++W+++++ 
Sbjct: 276 VGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISA 335

Query: 211 FVQNELYEEALILFRRAQVLGLEYN---------QFTISSVICACAGLAALIQGKQVHAV 261
           +V+  L  EA  LF+  Q+L LE N              +++ ACA ++AL QGK V   
Sbjct: 336 YVRRRLVAEACHLFQ--QMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQ 393

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVE 320
               G  S+    +++V++Y KCG + +A  +F  +    +V LWN MI+ +++  +S E
Sbjct: 394 AASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHE 453

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH-NVLPNVFHYSCM 379
            + LF +M+  G+ P+  +++S+L ACSH G+ ++GKSYF  M  ++ NV   + H+ C+
Sbjct: 454 ALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCV 513

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
            D+LGR G + EA + +  +P    A  W SLLA+CRN+R+L+ A+  A +L  +EP  A
Sbjct: 514 ADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCA 573

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIA 491
             ++ LSNIYA  ++W  VA+ RK + +  VKKE+  S +EI         G   HPR  
Sbjct: 574 TGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNR 633

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           EI  +L KL  +MK+ GY P+T+  LH V++  K+ LL  HSE+LA+  GL+    G P+
Sbjct: 634 EIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPL 693

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+ KNLR+C DCH+  K  S+IAGR+ +VRD  RFH F +G CSC D+W
Sbjct: 694 RVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 208/396 (52%), Gaps = 29/396 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SC    +   G   H  ++   L  D   SN L+N Y KCG +S A++VF +M
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            + R ++SW+ + G++  +G   EA+  F  ML  G    ++  + ++L AC++   V +
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQD 178

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGF 211
            + +H     +  +  + V  A++ +Y +CG + +A +VF++M E  R+ V+W+ M++ +
Sbjct: 179 GRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTY 238

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V N+  ++A+ L++R Q   L  ++ T  S++ AC+    +  G+ +H  +       N+
Sbjct: 239 VHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 295

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--- 328
              ++LV MYAKCG   +A  VF  +E+++++ W T+IS + R     E   LF++M   
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 355

Query: 329 QQAG----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH----NVLPNVFHYSCMI 380
           ++ G    + P+   ++++L+AC+ +  +E+GK     MV +      +  +    + ++
Sbjct: 356 EKNGSSQRVKPDALAFVTILNACADVSALEQGK-----MVSEQAASCGLSSDKAVGTAVV 410

Query: 381 DILGRAGLIHEA---YDLILNMPFDATASMWGSLLA 413
           ++ G+ G I EA   +D + + P      +W +++A
Sbjct: 411 NLYGKCGEIEEARRIFDAVCSRP---DVQLWNAMIA 443



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 177/341 (51%), Gaps = 9/341 (2%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y+ C     A+  FD + QR + SW  ++ ++  +G+ +E +     M ++G  P    
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRP-DAV 59

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T  + L +C     + +  ++H   + + ++ +  V  ALL++Y KCG +S A RVF  M
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 197 PE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
              RN ++WS M      +    EAL  FR   +LG++  +  + +++ AC+  A +  G
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFS 313
           + +H+ +  +GF S +  A++++ MY +CG V +A  VF  ++E  ++VV WN M+S + 
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            + R  + + L+++MQ   L P++ TY+S+LSACS    V  G+     +V    +  NV
Sbjct: 240 HNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVND-ELEKNV 295

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
              + ++ +  + G   EA  +   M   +  S W +++++
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIIS-WTTIISA 335


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 344/578 (59%), Gaps = 11/578 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNND---TLTSNILINFYSKCGLISGARKV 90
           STL + L   A+  A  +G   HA  +   L+ +    L    L++ Y+KC  +  A +V
Sbjct: 202 STLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRV 261

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F  M  R  V+W+ +IG +    R  EA  LF +ML EG    S  +V+S L  CA+  D
Sbjct: 262 FHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLAD 321

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +    QLH    K+ +  ++  G +LL +YAK GLI++A+ +F+ +  ++ +++ ++++G
Sbjct: 322 LRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSG 381

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +VQN   EEA ++F++ Q   ++ +  T+ S+I AC+ LAAL  G+  H  +   G    
Sbjct: 382 YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALE 441

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               +SL+DMYAKCG +  +  VF  +  +++V WNTMI+G+  H    E   LF  M+ 
Sbjct: 442 TSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKN 501

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  P++ T+I +++ACSH G+V +GK +FD M  ++ +LP + HY CM+D+L R G + 
Sbjct: 502 QGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLD 561

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EAY  I +MP  A   +WG+LL +CR ++N++L +  ++ +  + P+  GN +LLSNI++
Sbjct: 562 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFS 621

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           A  R++E A  R + +    KK    SW+EI         G ++HP   +IY +L+ ++ 
Sbjct: 622 AAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILI 681

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++KKLGY+ +T   L D+E+  K++ L++HSEKLA+ FG++ L     I + KNLR+CGD
Sbjct: 682 DIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGD 741

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K+ + +  R  IVRD NRFHHF NG CSC DFW
Sbjct: 742 CHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 131/415 (31%), Positives = 223/415 (53%), Gaps = 18/415 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       G+  HA    +GL+ D   S  LI+ Y +C     A  VF +M
Sbjct: 101 TFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKM 160

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WN ++  Y  +G    A+A  ++M   G    +  T+ S+L   A    +F+ 
Sbjct: 161 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQG 220

Query: 155 KQLHVFALKAAMDRN---VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             +H + L+A +D+N   V +GTALLD+YAKC  +  A RVF  M  RNEVTWS+++ GF
Sbjct: 221 TSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGF 280

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFT-ISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           V  +   EA  LF+   V G+ +   T ++S +  CA LA L  G Q+HA+L K+G  ++
Sbjct: 281 VLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHAD 340

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           + A +SL+ MYAK G + +A  +F  I  K+ + +  ++SG+ ++ ++ E  ++F+KMQ 
Sbjct: 341 LTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQA 400

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGK-SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             + P+  T +S++ ACSH+  ++ G+ S+  ++++   +  ++   + +ID+  + G I
Sbjct: 401 CNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSIC--NSLIDMYAKCGRI 458

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF------GMEPDN 438
             +  +   MP     S W +++A    Y    L +  A  LF      G EPD+
Sbjct: 459 DLSRQVFDKMPARDIVS-WNTMIA---GYGIHGLGK-EATTLFLSMKNQGFEPDD 508



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 182/365 (49%), Gaps = 10/365 (2%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G ++ AR+VFD +P     ++N +I +Y+  G    A+ L+ +ML   + P +++T   V
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYF-RVPPNKYTFPFV 105

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L AC+A  D+   + +H  A    +  ++FV TAL+D+Y +C     A+ VF  MP R+ 
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 202 VTWSSMVAGFVQNELYEEALI-LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
           V W++M+AG+  + +Y  A+  L       GL  N  T+ S++   A   AL QG  VHA
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHA 225

Query: 261 VLCKTGFGSN---MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
              +     N   +   ++L+DMYAKC  +V A  VF G+  +N V W+ +I GF    R
Sbjct: 226 YCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDR 285

Query: 318 SVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
             E   LF+ M   G+     T + S L  C+ +  +  G     L+ K   +  ++   
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKS-GIHADLTAG 344

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK--QLFGM 434
           + ++ +  +AGLI+EA  L   +    T S +G+LL+        E A +  K  Q   +
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTIS-YGALLSGYVQNGKAEEAFLVFKKMQACNV 403

Query: 435 EPDNA 439
           +PD A
Sbjct: 404 QPDIA 408



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++T+ + + +C+   A   G+  H  +I  GL  +T   N LI+ Y+KCG I  +R+VF
Sbjct: 406 DIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVF 465

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R IVSWNT+I  Y  +G  +EA  LF++M  +G  P  + T   ++ AC+    V
Sbjct: 466 DKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEP-DDVTFICLIAACSHSGLV 524

Query: 152 FECKQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K       H + +   M+  +     ++D+ A+ G + +A +  +SMP + +V  W 
Sbjct: 525 TEGKHWFDTMTHKYGILPRMEHYI----CMVDLLARGGFLDEAYQFIQSMPLKADVRVWG 580

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           +++     ++  +    + R  Q LG E    F + S I + AG
Sbjct: 581 ALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAG 624


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/621 (35%), Positives = 347/621 (55%), Gaps = 56/621 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L+ C+RE     GK  HA I+  G+  D +  N +++ Y KC     A   F+ M
Sbjct: 136 TLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELM 195

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFIN------------------------------ 124
            ++ +VSWN +IG+Y   G  ++++ +F N                              
Sbjct: 196 IEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLY 255

Query: 125 -MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M+  G T +S  T S  L   ++   V   +QLH   L   ++ + ++ ++L+++Y KC
Sbjct: 256 CMVAHG-TEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKC 314

Query: 184 GLISDASRVFESMP----------------ERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           G +  AS + + +P                +   V+WSSMV+G+V N  YE+ +  FR  
Sbjct: 315 GRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSM 374

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
               +  +  T++++I ACA    L  GKQ+HA + K G   + +  SSL+DMY+K G +
Sbjct: 375 VCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSL 434

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            DA  +F  I+E NVVLW +MISG + H +  E + LFE M   G+ PNE T++ VL+AC
Sbjct: 435 DDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNAC 494

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           SH+G++E+G  YF +M   +++ P V HY+ M+++ GRAG + EA + I         S+
Sbjct: 495 SHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSV 554

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           W S L+SCR ++N  + +  ++ L    P +   ++LLSN+ ++N +W+E A  R L+  
Sbjct: 555 WRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQ 614

Query: 468 SEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             VKK+  +SWV++K        G R+HP+  EIYS L+ L+  +K++GY  + +  + D
Sbjct: 615 RGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQD 674

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           VE+ + + L+ HHSEKLAL F ++   P  PIRIMKNLRIC DCH+F K+AS++  RE I
Sbjct: 675 VEEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREII 734

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           VRD +RFHHF   SCSC ++W
Sbjct: 735 VRDTHRFHHFKQSSCSCGEYW 755



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 189/424 (44%), Gaps = 51/424 (12%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L S     +P   +  H      G      ++N L+  Y K   +  A K+FDE+  +  
Sbjct: 39  LHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNT 98

Query: 100 VSWNTIIGSYTTNGREQEAV-ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
            +W  +I  +       E V +LF  M  +G  P +++T+SSVL  C+ + ++   K +H
Sbjct: 99  QTWTILISGFARAAGSSELVFSLFREMQADGACP-NQYTLSSVLKCCSRENNIQFGKGIH 157

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            + L+  +  +V +  ++LD+Y KC     A   FE M E++ V+W+ M+  +++    E
Sbjct: 158 AWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVE 217

Query: 219 EALILFRRAQ-------------------------------VLGLEYNQFTISSVICACA 247
           ++L +FR                                    G E++  T S  +   +
Sbjct: 218 KSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVS 277

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---------- 297
            L+ +  G+Q+H  +   G  S+ +  SSLV+MY KCG +  A  +   +          
Sbjct: 278 SLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNF 337

Query: 298 ------EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
                  +  +V W++M+SG+  + +  + M  F  M    +  + +T  +++SAC++ G
Sbjct: 338 GVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAG 397

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           ++E GK      +++  +  + +  S +ID+  ++G + +A  +I     +    +W S+
Sbjct: 398 ILEFGKQ-IHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDAL-MIFEQIKEPNVVLWTSM 455

Query: 412 LASC 415
           ++ C
Sbjct: 456 ISGC 459



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 3/182 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
             ++ T+   + +CA       GK  HA I  +GL  D    + LI+ YSK G +  A  
Sbjct: 380 VVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALM 439

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F+++ +  +V W ++I     +G+ +EA++LF  ML  G  P +E T   VL AC+   
Sbjct: 440 IFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIP-NEVTFVGVLNACSHVG 498

Query: 150 DVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCG-LISDASRVFESMPERNEVTWSSM 207
            + E C+   +      ++  V   T+++++Y + G LI   + +FE+        W S 
Sbjct: 499 LIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSF 558

Query: 208 VA 209
           ++
Sbjct: 559 LS 560


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 347/628 (55%), Gaps = 84/628 (13%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCG---------LISGARKVFDEMPQRCIVSWNTI- 105
           H  ++  G    T   N LI+ Y KC          L++ ARK+FDEMP R  +SW TI 
Sbjct: 171 HCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTII 230

Query: 106 ------------------------------IGSYTTNGREQEAVALFINMLREGKTPYSE 135
                                         I  Y   G   EA  +F  M+   K    E
Sbjct: 231 TGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMS-KIQLDE 289

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKA----AMDRNVFVGTALLDVYAKCGLISDASR 191
           FT +SV+  CA        K++H + LK     A D  + V  AL+  Y KCG +  A  
Sbjct: 290 FTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQE 349

Query: 192 VFESMPERNEVTWSSMVAGFVQ-----------NEL--------------------YEEA 220
           +F  MPER+ V+W+ +++G+V            NE+                     EEA
Sbjct: 350 IFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEA 409

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           L  F R ++ G E   +  +  I +C+ L +L  G+Q+HA + + G+ S++ A ++L+ M
Sbjct: 410 LKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITM 469

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           YA+CG V  A+ +F  +   + + WN MI+   +H +  + + LFE+M + G+ P+  ++
Sbjct: 470 YARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISF 529

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           ++V+SACSH G+V++G+ YFD M   + V P+  HY+ +ID+L RAG   EA +++ +MP
Sbjct: 530 LTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMP 589

Query: 401 FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460
           F+  A +W +LLA CR + N++L   AA++LF ++P + G ++LLSN+YA   +W ++A+
Sbjct: 590 FEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAK 649

Query: 461 ARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
            RKL+RD  VKKE   SW+E++        G  NHP + +IY+ LE+LV EM+K+GY P+
Sbjct: 650 VRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPD 709

Query: 513 TEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASR 572
           T+  LHDVE   K+  L  HSEKLA+ +G M L  G  +R+ KNLRICGDCH+  KF S+
Sbjct: 710 TKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSK 769

Query: 573 IAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + GRE +VRD  RFHHF +G CSC D+W
Sbjct: 770 VVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 224/516 (43%), Gaps = 126/516 (24%)

Query: 40  LQSCARERAPVR---GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           LQ C  + +P+     +  HA +I  G        N LI+ YSK   ++ AR +FDE+PQ
Sbjct: 18  LQICCLQ-SPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQ 76

Query: 97  RCIVS---------------------------------WNTIIGSYTTNGREQEAVALFI 123
             IV+                                 +N +I +Y+ N     A+ LF 
Sbjct: 77  PDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFC 136

Query: 124 NMLREGKTPYSEFTVSSVLCACA--AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           +M R+   P   +T +SVL A A  A+++   C+QLH   +K+       V  AL+  Y 
Sbjct: 137 DMQRDNFRP-DNYTFTSVLGALALVAEKEK-HCQQLHCAVVKSGTGFVTSVLNALISSYV 194

Query: 182 KCG---------LISDASRVFESMPERNEVTWSSMVAGFVQNE----------------- 215
           KC          L+++A ++F+ MP R+E++W++++ G+V+N                  
Sbjct: 195 KCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLG 254

Query: 216 --------------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
                         LY EA  +FR+  +  ++ ++FT +SVI  CA       GK++HA 
Sbjct: 255 VAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAY 314

Query: 262 LCKT----GFGSNMFAASSLVDMYAKCG-------------------------------C 286
             KT         M   ++L+  Y KCG                               C
Sbjct: 315 FLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRC 374

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + +A   F+ + EKN++ W  MISG ++   + E +  F +M+  G  P +  +   + +
Sbjct: 375 MDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIIS 434

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP-FDATA 405
           CS +G ++ G+     +V+ +    ++   + +I +  R G++  A+ L +NMP  DA +
Sbjct: 435 CSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAIS 493

Query: 406 SMWGSLLASCRNY----RNLELAEIAAKQLFGMEPD 437
             W +++A+   +    + +EL E   K+  G+ PD
Sbjct: 494 --WNAMIAALGQHGQGTQAIELFEEMLKE--GILPD 525



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 139/319 (43%), Gaps = 38/319 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDT----LTSNILINFYSKCGLISGARKV 90
           T  + +  CA       GK  HA  +    N         +N LI FY KCG +  A+++
Sbjct: 291 TFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEI 350

Query: 91  FDEMPQRCIVSWNTIIGSYTTN-------------------------------GREQEAV 119
           F++MP+R +VSWN I+  Y                                  G  +EA+
Sbjct: 351 FNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEAL 410

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
             F  M  +G  P  ++  +  + +C+    +   +QLH   ++   + ++  G AL+ +
Sbjct: 411 KFFNRMKLQGFEP-CDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITM 469

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YA+CG++  A  +F +MP  + ++W++M+A   Q+    +A+ LF      G+  ++ + 
Sbjct: 470 YARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISF 529

Query: 240 SSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
            +VI AC+    + +G++    +    G   +    + ++D+  + G   +A  V   + 
Sbjct: 530 LTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMP 589

Query: 299 -EKNVVLWNTMISGFSRHA 316
            E    +W  +++G   H 
Sbjct: 590 FEPGAPIWEALLAGCRIHG 608


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/553 (37%), Positives = 337/553 (60%), Gaps = 8/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA++I     +D    + L++ Y K G    A+++FDEMP R +VSWN+++   +  G  
Sbjct: 162 HARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYL 221

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
              +  F  M  E     +E T+ SV+ ACA    + E K LH   +K  M     V  +
Sbjct: 222 GACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNS 281

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++Y K G +  AS++FE MP R+ V+W+SMV     N   E+ + LF   +  G+  +
Sbjct: 282 LINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPD 341

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           Q T+ +++ AC       Q + +HA + + GF +++  A++L+++YAK G +  +  +F 
Sbjct: 342 QATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFE 401

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I++++ + W  M++G++ HA   E + LF+ M + G+  +  T+  +LSACSH G+VE+
Sbjct: 402 EIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 461

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GK YF++M + + V P + HYSCM+D+LGR+G + +AY+LI +MP + ++ +WG+LL +C
Sbjct: 462 GKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGAC 521

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R Y N+EL +  A+QL  ++P +  N+++LSNIY+A   W   ++ R L+++  + +   
Sbjct: 522 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPG 581

Query: 476 KSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S++E        + G + HPR  EI++KLE+L+ ++ + G  P+TE  LHD+++  K +
Sbjct: 582 CSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVD 641

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           ++  HSEKLA+ FGL+    GVP+ I KNLRICGDCHS  KFAS +  R  I+RD  RFH
Sbjct: 642 MINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFH 701

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 702 HFADGLCSCRDYW 714



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 34/323 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + + +CA   A   GK  H  ++ +G++      N LIN Y K G +  A ++F+EM
Sbjct: 243 TLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 302

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN+++  +  NG  ++ + LF  M R G  P  + T+ ++L AC       + 
Sbjct: 303 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP-DQATMVALLRACTDTGLGRQA 361

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H +  +   + ++ + TALL++YAK G ++ +  +FE + +R+ + W++M+AG+  +
Sbjct: 362 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVH 421

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA+ LF      G+E +  T + ++ AC+    + +GK+   ++      S ++  
Sbjct: 422 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIM------SEVYRV 475

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
              +D Y+   C+VD                           RS  +   +E ++   + 
Sbjct: 476 EPRLDHYS---CMVDLL------------------------GRSGRLEDAYELIKSMPME 508

Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
           P+   + ++L AC   G VE GK
Sbjct: 509 PSSGVWGALLGACRVYGNVELGK 531



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 4/305 (1%)

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           ++N   +  VA+F+  L    +  ++  V S++ A ++   V  C  +H   +K+    +
Sbjct: 115 SSNDSTRTKVAVFLGKLHN-SSLLADSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSD 173

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            F+G  L+ +Y K G   DA R+F+ MP R+ V+W+S+++G          L  F R + 
Sbjct: 174 GFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRT 233

Query: 230 -LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G + N+ T+ SV+ ACA + AL +GK +H V+ K G        +SL++MY K G + 
Sbjct: 234 ESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLD 293

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  +F  +  +++V WN+M+   + +  + + M LF  M++AG++P++ T +++L AC+
Sbjct: 294 AASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT 353

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             G+  + +S     + +     ++   + ++++  + G ++ + D+   +  D     W
Sbjct: 354 DTGLGRQAES-IHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDTIAW 411

Query: 409 GSLLA 413
            ++LA
Sbjct: 412 TAMLA 416



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 11/182 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ A L++C       + +  HA I   G N D + +  L+N Y+K G ++ +  +F+E
Sbjct: 343 ATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEE 402

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  ++W  ++  Y  +   +EA+ LF  M++EG       T + +L AC+    V E
Sbjct: 403 IKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEG-VEVDHVTFTHLLSACSHSGLVEE 461

Query: 154 CKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
            K+       V+ ++  +D      + ++D+  + G + DA  + +SMP E +   W ++
Sbjct: 462 GKKYFEIMSEVYRVEPRLDHY----SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL 517

Query: 208 VA 209
           + 
Sbjct: 518 LG 519


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 340/590 (57%), Gaps = 42/590 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H   I   + +D   +N LI+ Y  CG +  A KVF  + ++ +VSWN++I  +  
Sbjct: 152 GQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 211

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G   +A+ LF  M  E     S  T+  VL ACA  RD+   +++  +  +  ++ N+ 
Sbjct: 212 KGSPDKALELFKKMESE-DVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLT 270

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE------------- 218
           +  A+LD+Y KCG I DA R+F++M E++ VTW++M+ G+  +E YE             
Sbjct: 271 LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKD 330

Query: 219 ------------------EALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVH 259
                             EAL++F   Q+   ++ NQ T+ S + ACA + AL  G+ +H
Sbjct: 331 IVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIH 390

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           + + K G   N +  S+L+ MY+KCG +  A  VF+ +E+++V +W+ MI G + H    
Sbjct: 391 SYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGS 450

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + +F KMQ+A + PN  T+ +V  ACSH G+V++ +S F  M   + ++P   HY+C+
Sbjct: 451 EAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACI 510

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGR+G + +A   I  MP   + S+WG+LL +C+ + NL LAE+A  +L  +EP N 
Sbjct: 511 VDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRND 570

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           G H+LLSNIYA + +W+ V+  RK +R + +KKE   S +EI         G   HP   
Sbjct: 571 GAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSE 630

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR-KQELLIHHSEKLALTFGLMCLCPGVP 550
           ++Y KL +++E++K  GY+PE  H L  +E+   K++ L  HSEKLA+ +GL+       
Sbjct: 631 KVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKA 690

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           IR++KNLR+CGDCH+  K  S++  RE IVRD  RFHHF NG CSC DFW
Sbjct: 691 IRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 199/378 (52%), Gaps = 36/378 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNIL--INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA +I  G+ +D  +++ L  I   S    +  ARKVFDE+PQ    +WNT+I +Y 
Sbjct: 48  KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYA 107

Query: 111 TNGREQEAVALFINMLREGKTPY-SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           +      ++  F++M+      Y +++T   ++ A A    +   + LH  A+K+A+  +
Sbjct: 108 SGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSD 167

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           VFV  +L+  Y  CG +  A +VF ++ E++ V+W+SM+ GFVQ    ++AL LF++ + 
Sbjct: 168 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 227

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             ++ +  T+  V+ ACA +  L  G++V + + +     N+  A++++DMY KCG + D
Sbjct: 228 EDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIED 287

Query: 290 AYFVFSGIEE-------------------------------KNVVLWNTMISGFSRHARS 318
           A  +F  +EE                               K++V WN +IS + ++ + 
Sbjct: 288 AKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKP 347

Query: 319 VEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
            E +++F ++Q Q  +  N+ T +S LSAC+ +G +E G+ +    +K++ +  N +  S
Sbjct: 348 NEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR-WIHSYIKKNGIKMNFYVTS 406

Query: 378 CMIDILGRAGLIHEAYDL 395
            +I +  + G + +A ++
Sbjct: 407 ALIHMYSKCGDLEKAREV 424



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 31/244 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T+   L +CA+ R    G+   + I    +N +   +N +++ Y+KCG I  A+++FD  
Sbjct: 236 TMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 295

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                         MP++ IV+WN +I +Y  NG+  EA+ +F 
Sbjct: 296 EEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFH 355

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            +  +     ++ T+ S L ACA    +   + +H +  K  +  N +V +AL+ +Y+KC
Sbjct: 356 ELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKC 415

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  VF S+ +R+   WS+M+ G   +    EA+ +F + Q   ++ N  T ++V 
Sbjct: 416 GDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVF 475

Query: 244 CACA 247
           CAC+
Sbjct: 476 CACS 479



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 142/273 (52%), Gaps = 23/273 (8%)

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS--DASRVFESMP 197
           S++  C++ R +   KQ H   ++  M  + +  + L  + A     S   A +VF+ +P
Sbjct: 36  SLIDRCSSLRQL---KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIP 92

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY----NQFTISSVICACAGLAALI 253
           + N  TW++++  +      +    ++    ++  E     N++T   +I A A +++L 
Sbjct: 93  QPNSFTWNTLIRAYASGP--DPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G+ +H +  K+  GS++F A+SL+  Y  CG +  A  VF+ I+EK+VV WN+MI+GF 
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 210

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVL 370
           +     + + LF+KM+   +  +  T + VLSAC+ I  +E G+   SY    ++++ V 
Sbjct: 211 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSY----IEENRVN 266

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
            N+   + M+D+  + G I +A  L     FDA
Sbjct: 267 VNLTLANAMLDMYTKCGSIEDAKRL-----FDA 294



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL +TL +CA+  A   G+  H+ I   G+  +   ++ LI+ YSKCG +  AR+VF+ +
Sbjct: 369 TLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSV 428

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +  W+ +IG    +G   EAV +F  M +E     +  T ++V CAC+    V E 
Sbjct: 429 EKRDVFVWSAMIGGLAMHGCGSEAVDMFYKM-QEANVKPNGVTFTNVFCACSHTGLVDEA 487

Query: 155 KQLHVFALKAAM-----DRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           + L  + ++++      D++      ++DV  + G +  A +  E+MP
Sbjct: 488 ESL-FYKMESSYGIVPEDKHY---ACIVDVLGRSGYLEKAVKFIEAMP 531


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 333/558 (59%), Gaps = 12/558 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H+++I +    D     ++ N Y KCG + GA    ++M ++  V+   ++  YT 
Sbjct: 199 GKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQ 258

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
             R ++A+ LF  M+ EG      F  S +L ACAA  D++  KQ+H + +K  ++  V 
Sbjct: 259 AARNRDALLLFSKMISEG-VELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVS 317

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VGT L+D Y KC     A + FES+ E N+ +WS+++AG+ Q+  ++ AL +F+  +  G
Sbjct: 318 VGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKG 377

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  N F  +++  AC+ ++ LI G Q+HA   K G  + +   S+++ MY+KCG V  A+
Sbjct: 378 VLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAH 437

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F  I++ + V W  +I   + H ++ E + LF++MQ +G+ PN  T+I +L+ACSH G
Sbjct: 438 QAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACSHSG 497

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +V++GK + D M  ++ V P + HY+CMIDI  RAGL+ EA ++I +MPF+     W SL
Sbjct: 498 LVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSL 557

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L  C + RNLE+  IAA  +F ++P ++  ++++ N+YA   +W+E A+ RK++ +  ++
Sbjct: 558 LGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLR 617

Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHD-LHDVED 522
           KE S SW+ +KGK        R+HP+  +IYSKL++L    KK   +   E + L D  +
Sbjct: 618 KEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNVSFKKGEERLLNEENALCDFTE 677

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
            + Q  L+ HSE+LA+ +GL+C     PI + KN R C DCH F K  S + GRE +VRD
Sbjct: 678 RKDQ--LLDHSERLAIAYGLICTAADTPIMVFKNTRSCKDCHEFAKRVSVVTGRELVVRD 735

Query: 583 LNRFHHFTNGSCSCWDFW 600
            NRFHH  +G CSC D+W
Sbjct: 736 GNRFHHINSGECSCRDYW 753



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 188/409 (45%), Gaps = 15/409 (3%)

Query: 5   LRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL 64
           LR  H+F      +  IA  S N  + E        + C    A   GK+ H ++  M  
Sbjct: 61  LRQVHEF----IRNMDIAGISINPRSYEY-----LFKMCGTLGALSDGKLFHNRLQRMA- 110

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           N++    N ++  Y  C   + A + FD++  R + SW TII +YT  GR  EAV LF+ 
Sbjct: 111 NSNKFIDNCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLR 170

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           ML  G  P   F++ S L    A   + +  KQ+H   ++     ++ + T + ++Y KC
Sbjct: 171 MLDLGIIP--NFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKC 228

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A      M  ++ V  + ++ G+ Q     +AL+LF +    G+E + F  S ++
Sbjct: 229 GWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIIL 288

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            ACA L  L  GKQ+H+   K G  S +   + LVD Y KC     A   F  I E N  
Sbjct: 289 KACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDF 348

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W+ +I+G+ +  +    + +F+ ++  G+  N   Y ++  ACS +  +  G       
Sbjct: 349 SWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADA 408

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +K+  ++  +   S MI +  + G +  A+   L +    T + W +++
Sbjct: 409 IKK-GLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVA-WTAII 455



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            Q+C+     + G   HA  I  GL       + +I  YSKCG +  A + F  + +   
Sbjct: 389 FQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDT 448

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ-LH 158
           V+W  II ++  +G+  EA+ LF  M   G  P +  T   +L AC+    V E KQ L 
Sbjct: 449 VAWTAIICAHAYHGKASEALRLFKEMQGSGVRP-NVVTFIGLLNACSHSGLVKEGKQFLD 507

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
               K  ++  +     ++D+Y++ GL+ +A  V  SMP E + ++W S++ G
Sbjct: 508 SMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSLLGG 560


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 346/593 (58%), Gaps = 31/593 (5%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           +E   L   L  C++ R   +GK  H  +  +G +   +  N +I+ YSKCG++  A +V
Sbjct: 2   SESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARV 61

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F+ +P R ++SWN +I  YT     +EA+ LF  M  +G+ P   +T SS L AC+    
Sbjct: 62  FNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVP-DGYTYSSSLKACSCADA 120

Query: 151 VFECKQLHVFALKAAMDRNVF-------VGTALLDVYAKCGLISDASRVFESMPERNEVT 203
             E  Q+H     AA+ R+ F       V  AL+D+Y KC  +++A +VF+ + E++ ++
Sbjct: 121 AGEGMQIH-----AALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMS 175

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           WS+++ G+ Q +  +EA+ LFR  +      + F +SS+I   A  A L QGKQ+HA   
Sbjct: 176 WSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTI 235

Query: 264 KTGFGS-NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
           K  +G   M  A+S++DMY KCG  V+A  +F  + E+NVV W  MI+G+ +H    + +
Sbjct: 236 KVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAV 295

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LF +MQ+ G+ P+  TY++VLSACSH G++++GK YF ++     + P V HY+CM+D+
Sbjct: 296 ELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDL 355

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
           LGR G + EA +LI  MP      +W +LL+ CR + ++E+ +   + L   E +N  N+
Sbjct: 356 LGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANY 415

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIY 494
           +++SN+YA    W+E  + R+ ++   +KKE  +SWVE+         G   HP I EI+
Sbjct: 416 VMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIH 475

Query: 495 SKLEKLVEEMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP--- 550
             L+++ + +K ++GY       LHDVE+  K E L  HSEKLA+  GL+ +  G+    
Sbjct: 476 EVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAI--GLVLVRRGLKLKG 533

Query: 551 ---IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              IRI KNLR+CGDCH+F+K  S++     +VRD NRFH F NG CSC D+W
Sbjct: 534 ERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/553 (41%), Positives = 330/553 (59%), Gaps = 9/553 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L +C    A V G+  H+ +   G   +    + L++ Y+KC  +  A KVF+EM
Sbjct: 132 TFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEM 191

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWNT+I  +  N    +A+  F  +L E  T   E + SSV  ACA   ++   
Sbjct: 192 PVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFG 251

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H  ALK  +   V++  +L D+Y KCGL +D +++F +   R+ VTW+ M+  +V N
Sbjct: 252 KQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYN 311

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             YE+A   F   +  G   ++ + SSV+ +CA LAAL QG  +H  + ++GF  N+  A
Sbjct: 312 HNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVA 371

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           SSL+ MYAKCG +VDA+ +F   E++NVV W  +I+   +H  +  V+ LFE+M + G+ 
Sbjct: 372 SSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIK 431

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++SVLSACSH G VE+G  YF+ M+K H + P   HY+C++D+L RAG +  A  
Sbjct: 432 PDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKR 491

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP    AS+WG+LL++CRN+ NL + +  A +LF +EPDN GN++LL NI   N  
Sbjct: 492 FIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGM 551

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKK 506
             E    R+ +    V+KE   SW++IK          ++H +  EIY  LEKL E +KK
Sbjct: 552 LNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKK 611

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY  ETE  ++  E+ ++Q L  +HSEK+AL FGL+ L  G PIRI KNLR CGDCH+ 
Sbjct: 612 KGYVAETEFAINTAEEYKEQSLW-YHSEKIALAFGLLSLPAGAPIRIKKNLRTCGDCHTV 670

Query: 567 MKFASRIAGRETI 579
           MKFAS I  RE I
Sbjct: 671 MKFASEIFAREII 683



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 205/389 (52%), Gaps = 12/389 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNG 113
           H+++I   L +     N L+N Y+KCG +     +F   P   + +VSW ++I   T   
Sbjct: 50  HSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFK 109

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
           R  +A+  F +M R G  P + +T S+VL AC         +Q+H    K      VFV 
Sbjct: 110 RPFKALTFFNHMRRSGVYP-NHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVV 168

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           +AL+D+YAKC  +  A +VFE MP RN V+W++M+ GF+QN+LY++A+  F+   +  L 
Sbjct: 169 SALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLT 228

Query: 234 -YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             ++ + SSV  ACA    L  GKQVH V  K G  + ++  +SL DMY KCG   D   
Sbjct: 229 ALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAK 288

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +FS    ++VV WN MI  +  +    +    F  M++ G  P+E +Y SVL +C+++  
Sbjct: 289 LFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAA 348

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           + +G    + +++    + N+   S +I +  + G + +A+  I     D     W +++
Sbjct: 349 LYQGTLIHNQIIRS-GFVKNLRVASSLITMYAKCGSLVDAFQ-IFEETEDRNVVCWTAII 406

Query: 413 ASCRNYRN----LELAEIAAKQLFGMEPD 437
           A+C+ + +    +EL E   ++  G++PD
Sbjct: 407 AACQQHGHANWVVELFEQMLRE--GIKPD 433



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 145/273 (53%), Gaps = 7/273 (2%)

Query: 130 KTPY-SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           +TP+    T  + L  C+  R      Q+H   +  A+    F+   LL++YAKCG +  
Sbjct: 23  QTPFLHPLTSLNSLLNCS--RTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQ 80

Query: 189 ASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
              +F S P+  +N V+W+S++    + +   +AL  F   +  G+  N +T S+V+ AC
Sbjct: 81  TLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSAC 140

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
               A + G+Q+H+++ K GF + +F  S+LVDMYAKC  ++ A  VF  +  +N+V WN
Sbjct: 141 TDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWN 200

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           TMI GF ++    + +  F+ +    L   +E ++ SV SAC++ G +E GK    + +K
Sbjct: 201 TMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALK 260

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
              V   V+  + + D+ G+ GL ++   L  N
Sbjct: 261 L-GVWNLVYINNSLSDMYGKCGLFNDVAKLFSN 292



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 169/369 (45%), Gaps = 42/369 (11%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           N  A +  +  +   +CA       GK  H   + +G+ N    +N L + Y KCGL + 
Sbjct: 226 NLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFND 285

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
             K+F     R +V+WN +I +Y  N   ++A   F  M R+G  P  E + SSVL +CA
Sbjct: 286 VAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIP-DEASYSSVLHSCA 344

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
               +++   +H   +++   +N+ V ++L+ +YAKCG + DA ++FE   +RN V W++
Sbjct: 345 NLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTA 404

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           ++A   Q+      + LF +    G++ +  T  SV+ AC+           H    + G
Sbjct: 405 IIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACS-----------HTGRVEEG 453

Query: 267 F--GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           F   ++M     +   +    C+VD                 +      R  R +E+M  
Sbjct: 454 FFYFNSMIKVHGIYPGHEHYACIVDLL---------------SRAGELDRAKRFIELM-- 496

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDIL 383
                   + P+   + ++LSAC +   +  GK   ++ +K  ++ P N  +Y  + +IL
Sbjct: 497 -------PIKPDASVWGALLSACRNHSNLIMGK---EVALKLFDLEPDNPGNYVLLCNIL 546

Query: 384 GRAGLIHEA 392
            R G+++EA
Sbjct: 547 TRNGMLNEA 555


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/558 (37%), Positives = 340/558 (60%), Gaps = 10/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++      +    N L+++YSK   +    K+F EMP+   +S+N +I SY  
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAW 319

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG+ +E+  LF   L+  +    +F  +++L    +  ++   +Q+H  A+    +    
Sbjct: 320 NGQFKESFDLF-RKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR 378

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  AL+D+YAKC    +A ++F+++  ++ V W++M++ +VQ   +EE + +F   +  G
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTG 438

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  +Q T +S++ ACA LA++  G+Q+H++L ++GF SN+++ S+L+D YAKCGC+ DA 
Sbjct: 439 VPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAI 498

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F  + E+N V WN +IS ++++      +  F++M Q+G  P+  +++SVLSACSH G
Sbjct: 499 KSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCG 558

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            VE+   +F+ M + + V P   HY+ M+D+L R G   EA  L+  MPF+ +  MW S+
Sbjct: 559 FVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSV 618

Query: 412 LASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           L SCR ++N ELA+ AA +LF ME   +A  ++ +SNIYA   +W+ VA+ +K +RD  V
Sbjct: 619 LNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGV 678

Query: 471 KKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           +K  + SWVEIK          ++HP + +I  K+  L +EM+K GYKP+T   LHDV++
Sbjct: 679 RKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDE 738

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K E L +HSE+ A+ F LM    G PI +MKNLR C DCH+ +K  S+I  RE IVRD
Sbjct: 739 VIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRD 798

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFHHF +G CSC D+W
Sbjct: 799 SSRFHHFKDGVCSCGDYW 816



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 197/385 (51%), Gaps = 5/385 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  +I +G   + +  N L++ Y K   +  A ++F  M  +  V++N+++  Y+  G  
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ LF+ +   G  P S+FT +++L A     D    +Q+H F LK     NVFVG A
Sbjct: 223 EEAIELFLELHNSGIKP-SDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNA 281

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LLD Y+K   + +  ++F  MPE + ++++ ++  +  N  ++E+  LFR+ Q    +  
Sbjct: 282 LLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRR 341

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           QF  ++++        L  G+Q+H      G        ++LVDMYAKC    +A  +F 
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFD 401

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I  K+ V W  MIS + +  +  E + +F  M++ G+  ++ T+ S+L AC+++  +  
Sbjct: 402 NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISL 461

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+    L+++    + NV+  S ++D   + G + +A      MP   + S W +L+++ 
Sbjct: 462 GRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVS-WNALISAY 519

Query: 416 RNYRNLELAEIAAKQLF--GMEPDN 438
               N++    + +Q+   G +PD+
Sbjct: 520 AQNGNVDGTLNSFQQMIQSGYKPDS 544



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 157/296 (53%), Gaps = 2/296 (0%)

Query: 51  RGKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           RG + HA ++       +T++ N++I+ + K G +S AR++FD M +R  VSW  +IG Y
Sbjct: 56  RGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGY 115

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             + + +EA  L+ +M R G  P    T+ ++L             Q+H   +K   + N
Sbjct: 116 LQSNQSKEAFRLYADMRRGGIEP-DYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYN 174

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + V  +L+D Y K   +  AS++F+ M  ++ VT++S++ G+    L EEA+ LF     
Sbjct: 175 LMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHN 234

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G++ + FT ++++ A  GL     G+QVH  + KT F  N+F  ++L+D Y+K   V +
Sbjct: 235 SGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDE 294

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
              +F  + E + + +N +I+ ++ + +  E   LF K+Q       +  + ++LS
Sbjct: 295 VGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLS 350



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 119/233 (51%), Gaps = 1/233 (0%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           +N      ++  + K G +S A  +F+ M ER  V+W+ ++ G++Q+   +EA  L+   
Sbjct: 72  KNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADM 131

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  G+E +  T+ +++     L       Q+H  + K G+  N+   +SLVD Y K  C+
Sbjct: 132 RRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCL 191

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  +F  +  K+ V +N++++G+S    + E + LF ++  +G+ P++ T+ ++LSA 
Sbjct: 192 YLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAA 251

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
             +   + G+     ++K  N + NVF  + ++D   +   + E   L   MP
Sbjct: 252 VGLDDTKFGQQVHGFVLKT-NFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMP 303



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 11/181 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  + L++CA   +   G+  H+ +I  G  ++  + + L++ Y+KCG ++ A K F E
Sbjct: 444 ATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGE 503

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R  VSWN +I +Y  NG     +  F  M++ G  P S  +  SVL AC+    V E
Sbjct: 504 MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDS-VSFLSVLSACSHCGFVEE 562

Query: 154 C-----KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
                     ++ +    +      T+++DV  + G   +A ++   MP E +E+ WSS+
Sbjct: 563 ALWHFNSMTQIYEVTPKREHY----TSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSV 618

Query: 208 V 208
           +
Sbjct: 619 L 619


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 353/596 (59%), Gaps = 14/596 (2%)

Query: 13  YKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
           ++ FS   ++    N  A     L + L++     + V GK  H   I    + +     
Sbjct: 248 FRVFSKMRVSGCKPNPFA-----LTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGG 302

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            L++ Y+KCG I  AR  F+ +P   ++  + +I  Y  + + ++A  LF+ ++R    P
Sbjct: 303 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 362

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
            +E+++SSVL AC     +   KQ+H  A+K   + ++FVG AL+D YAKC  +  + ++
Sbjct: 363 -NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKI 421

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F S+ + NEV+W+++V GF Q+ L EEAL +F   Q   +   Q T SSV+ ACA  A++
Sbjct: 422 FSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI 481

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
               Q+H  + K+ F ++    +SL+D YAKCG + DA  VF  + E++++ WN +ISG+
Sbjct: 482 RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGY 541

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           + H ++ + + LF++M ++ +  N+ T++++LS CS  G+V  G S FD M   H + P+
Sbjct: 542 ALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPS 601

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           + HY+C++ +LGRAG +++A   I ++P   +A +W +LL+SC  ++N+ L   +A+++ 
Sbjct: 602 MEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKIL 661

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-------- 484
            +EP +   ++LLSN+YAA    ++VA  RK +R+  V+K    SWVEIKG+        
Sbjct: 662 EIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGS 721

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
            +HP +  I + LE L  +  + GY P+    LHDV+  +K  +L  HSE+LAL +GL+ 
Sbjct: 722 VDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVM 781

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             PG PIRI+KNLR C DCH+     S+I  RE IVRD+NRFHHF +G CSC D+W
Sbjct: 782 TPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 180/329 (54%), Gaps = 5/329 (1%)

Query: 40  LQSCARERAPVRGKVCHAKII---GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           LQ C        G+  H  ++   G+G   D   +N+L+N Y K G ++ AR++FD MP+
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVG-RLDLFCANVLLNMYGKLGPLASARRLFDRMPE 124

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           R +VS+ T++ ++   G  + A ALF  +  EG    ++F ++++L    A         
Sbjct: 125 RNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE-VNQFVLTTMLKLAIAMDAAGLAGG 183

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H  A K   D N FVG+ L+D Y+ C L+SDA  VF  +  ++ V W++MV+ + +N+ 
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            E A  +F + +V G + N F ++SV+ A   L +++ GK +H    KT   +      +
Sbjct: 244 PENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGA 303

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+DMYAKCG + DA   F  I   +V+L + MIS +++  ++ +   LF ++ ++ + PN
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 363

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           E +  SVL AC+++  ++ GK   +  +K
Sbjct: 364 EYSLSSVLQACTNMVQLDFGKQIHNHAIK 392



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 5/270 (1%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALK-AAMDR-NVFVGTALLDVYAKCGLISDASRVF 193
           F  +  L  C A+ D    + +H   ++   + R ++F    LL++Y K G ++ A R+F
Sbjct: 60  FACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLF 119

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + MPERN V++ ++V    Q   +E A  LFRR +  G E NQF +++++     + A  
Sbjct: 120 DRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAG 179

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
               VH+   K G   N F  S L+D Y+ C  V DA  VF+GI  K+ V+W  M+S +S
Sbjct: 180 LAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS 239

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN-VLPN 372
            +        +F KM+ +G  PN     SVL A   +  V  GK      +K  N   P+
Sbjct: 240 ENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPH 299

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           V     ++D+  + G I +A      +P+D
Sbjct: 300 V--GGALLDMYAKCGDIKDARLAFEMIPYD 327


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 345/583 (59%), Gaps = 10/583 (1%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
            N    +L T+ + LQ+C        GK  H  +I  G   DT  SNILIN Y+KCG + 
Sbjct: 309 VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLL 368

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            +++VF  M  +  VSWN++I  Y  NG   EA+ LF  M++    P S  T   +L   
Sbjct: 369 ASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDS-VTYVMLLSMS 426

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
               D+   K+LH    K   + N+ V   L+D+YAKCG + D+ +VFE+M  R+ +TW+
Sbjct: 427 TQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 486

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +++A  V +E     L +  R +  G+  +  T+ S++  C+ LAA  QGK++H  + K 
Sbjct: 487 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 546

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G  S++   + L++MY+KCG + +++ VF  ++ K+VV W  +IS    +    + +  F
Sbjct: 547 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 606

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
            +M+ AG+ P+   +++++ ACSH G+VE+G +YF  M K + + P + HY+C++D+L R
Sbjct: 607 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 666

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           + L+ +A D IL+MP    +S+WG+LL++CR   + E+AE  ++++  + PD+ G ++L+
Sbjct: 667 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLV 726

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKL 497
           SNIYAA  +W++V   RK I+   +KK+   SW+EI+        G +   +  E+   L
Sbjct: 727 SNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLL 786

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
             L   M K GY    +  LHD+++  K+++L  HSE+LA+ FGL+   PG P+++MKNL
Sbjct: 787 GMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNL 846

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCH+  K+ S+I  RE +VRD NRFH F +G+CSC D+W
Sbjct: 847 RVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 230/429 (53%), Gaps = 11/429 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + + +CA        K  H +++ MG  +D    N LI+ Y +   +  ARKVF+EM
Sbjct: 117 TFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM 176

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN++I  Y  NG   EA+ ++      G  P S +T+SSVL AC     V E 
Sbjct: 177 PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDS-YTMSSVLRACGGLGSVEEG 235

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H    K  + ++V V   LL +Y K   + D  R+F+ M  R+ V+W++M+ G+ Q 
Sbjct: 236 DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQV 295

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            LYEE++ LF    V   + +  TI+S++ AC  L  L  GK VH  +  +G+  +  A+
Sbjct: 296 GLYEESIKLFME-MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 354

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L++MYAKCG ++ +  VFSG++ K+ V WN+MI+ + ++    E M LF KM +  + 
Sbjct: 355 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVK 413

Query: 335 PNEQTYISVLSACSHIGMVEKGKS-YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
           P+  TY+ +LS  + +G +  GK  + DL     N   N+   + ++D+  + G + ++ 
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFN--SNIVVSNTLVDMYAKCGEMGDSL 471

Query: 394 DLILNMPFDATASMWGSLLASCRNYR--NLELAEIAAKQLFGMEPDNAG--NHLLLSNIY 449
            +  NM      + W +++ASC +    NL L  I+  +  G+ PD A   + L + ++ 
Sbjct: 472 KVFENMKARDIIT-WNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 530

Query: 450 AANRRWEEV 458
           AA R+ +E+
Sbjct: 531 AAKRQGKEI 539



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 210/421 (49%), Gaps = 44/421 (10%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-EMPQRCIVSWNTIIGSYTTNGR 114
           H+ II +GL++  + S  LI  Y+     + +  VF    P   +  WN+II + T NG 
Sbjct: 36  HSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGL 95

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
             EA++L+    R    P   +T  SV+ ACA   D    K +H   L      ++++G 
Sbjct: 96  FSEALSLYSETQRIRLQP-DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           AL+D+Y +   +  A +VFE MP R+ V+W+S+++G+  N  + EAL ++ R + LG+  
Sbjct: 155 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVP 214

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           + +T+SSV+ AC GL ++ +G  +H ++ K G   ++   + L+ MY K   ++D   +F
Sbjct: 215 DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIF 274

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             +  ++ V WNTMI G+S+     E + LF +M      P+  T  S+L AC H+G +E
Sbjct: 275 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLE 333

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS-MWGSLLA 413
            GK   D M+           Y C                       D TAS +  ++ A
Sbjct: 334 FGKYVHDYMITS--------GYEC-----------------------DTTASNILINMYA 362

Query: 414 SCRNYRNLELAEIAAKQLF-GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
            C N        +A++++F GM+  ++ +   + N+Y  N  ++E  +  K+++ ++VK 
Sbjct: 363 KCGNL-------LASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKP 414

Query: 473 E 473
           +
Sbjct: 415 D 415


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/620 (35%), Positives = 352/620 (56%), Gaps = 54/620 (8%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL + L+ C+ +     GK  HA ++  G++ D +  N +++ Y KC +   A ++F+ M
Sbjct: 392  TLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELM 451

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALF----------INMLREG--------------- 129
             +  +VSWN +IG+Y   G  ++++ +F           N + +G               
Sbjct: 452  NEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLY 511

Query: 130  -----KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
                  T +S  T S  L   ++   V   +QLH   LK   D + F+ ++L+++Y KCG
Sbjct: 512  CMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCG 571

Query: 185  LISDAS----------------RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
             +  AS                RV    P+   V+W SMV+G+V N  YE+ L  FR   
Sbjct: 572  RMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMV 631

Query: 229  VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
               +  +  T++++I ACA    L  G+ VHA + K G   + +  SSL+DMY+K G + 
Sbjct: 632  RELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLD 691

Query: 289  DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            DA+ VF    E N+V+W +MISG++ H + +  + LFE+M   G+ PNE T++ VL+ACS
Sbjct: 692  DAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACS 751

Query: 349  HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
            H G++E+G  YF +M   + + P V H + M+D+ GRAG + +  + I         S+W
Sbjct: 752  HAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVW 811

Query: 409  GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
             S L+SCR ++N+E+ +  ++ L  + P + G ++LLSN+ A+N RW+E AR R L+   
Sbjct: 812  KSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQR 871

Query: 469  EVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
             VKK+  +SW+++K        G R+HP+  EIYS L+ L+  +K++GY  + +  + DV
Sbjct: 872  GVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDV 931

Query: 521  EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
            E+ + + L+ HHSEKLA+ FG++      PIRI+KNLRIC DCH+F+K+AS++  RE IV
Sbjct: 932  EEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIV 991

Query: 581  RDLNRFHHFTNGSCSCWDFW 600
            RD++RFHHF +GSCSC D+W
Sbjct: 992  RDIHRFHHFKHGSCSCGDYW 1011



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 203/427 (47%), Gaps = 57/427 (13%)

Query: 40  LQSCAR-----ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           LQSC+        +P      HA  +  G       +N L+  Y+K   ++ A+K+FDE+
Sbjct: 291 LQSCSLYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEI 350

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           PQR   +W  +I  +   G  +    LF  M  +G  P +++T+SSVL  C+   ++   
Sbjct: 351 PQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACP-NQYTLSSVLKCCSLDNNLQLG 409

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H + L+  +D +V +G ++LD+Y KC +   A R+FE M E + V+W+ M+  +++ 
Sbjct: 410 KGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRA 469

Query: 215 ELYEEALILFRRAQV-------------------------------LGLEYNQFTISSVI 243
              E++L +FRR                                   G E++  T S  +
Sbjct: 470 GDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIAL 529

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI------ 297
              + L+ +  G+Q+H ++ K GF S+ F  SSLV+MY KCG +  A  +   +      
Sbjct: 530 ILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLR 589

Query: 298 ----------EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
                      +  +V W +M+SG+  + +  + +  F  M +  +  + +T  +++SAC
Sbjct: 590 KGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISAC 649

Query: 348 SHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           ++ G++E G+     + K  H +  + +  S +ID+  ++G + +A+ ++     +    
Sbjct: 650 ANAGILEFGRHVHAYVQKIGHRI--DAYVGSSLIDMYSKSGSLDDAW-MVFRQSNEPNIV 706

Query: 407 MWGSLLA 413
           MW S+++
Sbjct: 707 MWTSMIS 713



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 3/181 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            ++ T+   + +CA       G+  HA +  +G   D    + LI+ YSK G +  A  V
Sbjct: 637 VDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMV 696

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F +  +  IV W ++I  Y  +G+   A+ LF  ML +G  P +E T   VL AC+    
Sbjct: 697 FRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIP-NEVTFLGVLNACSHAGL 755

Query: 151 VFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCG-LISDASRVFESMPERNEVTWSSMV 208
           + E C+   +      ++  V   T+++D+Y + G L    + +F++        W S +
Sbjct: 756 IEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFL 815

Query: 209 A 209
           +
Sbjct: 816 S 816


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/592 (37%), Positives = 337/592 (56%), Gaps = 26/592 (4%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           + AS NA      T    ++SCA    P+ GK  H  +   G   +      LI+ Y KC
Sbjct: 4   SGASPNA-----FTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKC 58

Query: 82  GLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
            LI  ARK+FDE PQ  +  V +N+++  Y  N R ++ V LF  M RE     +  T+ 
Sbjct: 59  SLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEM-RELGVEINGVTML 117

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
            ++  C    ++     +H F +K  +D +  VG  LL +Y K G I    ++F+ MP +
Sbjct: 118 GLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRK 177

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
             +TW++M+ G+ QN L    L L++  +  G   +  T+  V+ +CA L AL  GK+V 
Sbjct: 178 GLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVE 237

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             +   GF SN F  ++LV+MYA+CG +  A  +F G+  K+VV W  +I G+  H +  
Sbjct: 238 RKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGE 297

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
             + LF++M + G+ P+   ++SVLSACSH G+  KG  YF +M +++ + P   HYSCM
Sbjct: 298 VAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCM 357

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGRAG ++EA +LI +M   A  ++WG+LL +C+ +RN+ELAE+A +Q+  +EP N 
Sbjct: 358 VDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNT 417

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIA 491
           G ++LLSN+Y      E + R R L+R  ++KK+   S+VE KG+        RNHP+  
Sbjct: 418 GYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTN 477

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH---HSEKLALTFGLMCLCPG 548
           EIY KL +L   +K L    + +H+       R++E L     HSEKLA+ F L+     
Sbjct: 478 EIYKKLNELENLVKDLDGCKKNDHE-------RREEYLNSMGVHSEKLAVAFALLNTRKE 530

Query: 549 VPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             I I+KNLRICGDCH F+K  S+I  R+ +VRD  RFHHF NG CSC ++W
Sbjct: 531 TEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 161/319 (50%), Gaps = 7/319 (2%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           MLR G +P + FT    + +CAA       KQLH    K       FV T+L+ +Y KC 
Sbjct: 1   MLRSGASP-NAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCS 59

Query: 185 LISDASRVFESMPERNEVT--WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           LI +A ++F+  P+  ++T  ++S+++G+  N   ++ ++LF   + LG+E N  T+  +
Sbjct: 60  LIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGL 119

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           +  C     L  G  VH    K G   +    + L+ MY K G +     +F  +  K +
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL 179

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           + WN MI+G++++  +  V+ L+++M+  G  P+  T + VLS+C+H+G +  GK   + 
Sbjct: 180 ITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKE-VER 238

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
            ++      N F  + ++++  R G + +A D+   MP  +  S W +++     +   E
Sbjct: 239 KMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVS-WTAIIGGYGMHGQGE 297

Query: 423 LAEIAAKQLF--GMEPDNA 439
           +A     ++   G++PD  
Sbjct: 298 VAVGLFDEMIRGGIKPDGT 316


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 312/508 (61%), Gaps = 43/508 (8%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR---- 191
           FT+  VL +CA    V   + +H   L+  ++ + +VG +L+D+Y KCG+I DA +    
Sbjct: 108 FTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDK 167

Query: 192 ---------------------------VFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
                                      +FE M  RN V+W++M++G+ QN   E+AL LF
Sbjct: 168 MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLF 227

Query: 225 RRAQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
                 G E   N  TI SV+ ACA  AAL +G+++H      G   N    ++L  MYA
Sbjct: 228 DEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYA 287

Query: 283 KCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           KC  +V+A   F  I +  KN++ WNTMI+ ++ H   VE + +FE M +AG+ P+  T+
Sbjct: 288 KCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTF 347

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           + +LS CSH G+++ G ++F+ M   H+V P V HY+C++D+LGRAG + EA +LI  MP
Sbjct: 348 MGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMP 407

Query: 401 FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460
             A  S+WG+LLA+CR++RNLE+AE+AA++LF +EPDN+GN++LLSN+YA    WEEV +
Sbjct: 408 MQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKK 467

Query: 461 ARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
            R L++   +KK    SW+EI GK        ++HP+  EIY  LE L E++K  GY P+
Sbjct: 468 LRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPD 527

Query: 513 TEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASR 572
           T   LHD+ +  K+  L  HSEKLA+ FGL+   PGV +R+ KNLRICGDCH+  KF S+
Sbjct: 528 TSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISK 587

Query: 573 IAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I  RE IVRDLNRFH F +GSCSC D+W
Sbjct: 588 IYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 162/374 (43%), Gaps = 49/374 (13%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+SCA       G+  H + + +GL  D      LI+ Y KCG+I  ARK+FD+M
Sbjct: 109 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 168

Query: 95  -------------------------------PQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                            R IVSW  +I  YT NG  ++A+ LF 
Sbjct: 169 IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFD 228

Query: 124 NMLREGKTPYSEF-TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
            ML++G      + T+ SVL ACA    +   +++H FA    +  N  V TAL  +YAK
Sbjct: 229 EMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAK 288

Query: 183 CGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           C  + +A   F+ + +  +N + W++M+  +  +    EA+ +F      G++ +  T  
Sbjct: 289 CYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFM 348

Query: 241 SVICAC-------AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            ++  C       AGL        +H+V  +          + +VD+  + G +V+A  +
Sbjct: 349 GLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEH------YACVVDLLGRAGRLVEAKEL 402

Query: 294 FSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
            S +  +    +W  +++    H R++E+  L  +        N   Y+ + +  +  GM
Sbjct: 403 ISQMPMQAGPSVWGALLAACRSH-RNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 461

Query: 353 VEKGKSYFDLMVKQ 366
            E+ K    L+  Q
Sbjct: 462 WEEVKKLRALLKYQ 475



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 33/172 (19%)

Query: 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
           + R   LGL  + FT+  V+ +CA L+ +  G+ VH    + G   + +  +SL+DMY K
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154

Query: 284 CGCVVDA---------------------YF----------VFSGIEEKNVVLWNTMISGF 312
           CG + DA                     Y           +F  +E +N+V W  MISG+
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214

Query: 313 SRHARSVEVMILFEKMQQAG--LHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           +++  + + + LF++M Q G  + PN  T +SVL AC+    +E+G+   D 
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDF 266


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 342/578 (59%), Gaps = 11/578 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNND---TLTSNILINFYSKCGLISGARKV 90
           STL + L   A+  A  +G   HA  +   L  +    L    L++ Y+KC  +  A +V
Sbjct: 203 STLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRV 262

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F  MP R  V+W+ +IG +    R  EA  LF +ML EG    S  +V+S L  CA+  D
Sbjct: 263 FHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLAD 322

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +    QLH    K+ +  ++    +LL +YAK GLI++A+  F+ +  ++ +++ ++++G
Sbjct: 323 LHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSG 382

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            VQN   EEA ++F++ Q   +E +  T+ S+I AC+ LAAL  GK  H  +   G    
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALE 442

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               +SL+DMYAKCG +  +  VF  +  ++VV WNTMI+G+  H    E   LF  M+ 
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKN 502

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  P++ T+I +++ACSH G+V +GK +FD M  ++ +LP + HY CM+D+L R GL+ 
Sbjct: 503 QGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLD 562

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EAY  I +MP  A   +WG+LL +CR ++N++L +  ++ +  + P+  GN +LLSNI++
Sbjct: 563 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFS 622

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           A  R++E A  R + +    KK    SW+EI         G ++HP   +IY +L+ ++ 
Sbjct: 623 AAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMV 682

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++KKLGY+ +T   L D+E+  K++ L++HSEKLA+ FG++ L     I + KNLR+CGD
Sbjct: 683 DIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGD 742

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K+ + +  R  IVRD NRFHHF NG CSC +FW
Sbjct: 743 CHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 213/385 (55%), Gaps = 8/385 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       G+  HA     GL+ D   S  LI+ Y +C     AR VF +M
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WN ++  Y  +G    A+A  ++M   G    +  T+ S+L   A    +F+ 
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221

Query: 155 KQLHVFALKAAMDRN---VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             +H + L+A +++N   V +GTALLD+YAKC  +  A RVF  MP RN+VTWS+++ GF
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 212 VQNELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           V  +   EA  LF+   V GL + +  +++S +  CA LA L  G Q+HA++ K+G  ++
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHAD 341

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           + A++SL+ MYAK G + +A   F  I  K+ + +  ++SG  ++ ++ E  ++F+KMQ 
Sbjct: 342 LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQA 401

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGK-SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             + P+  T +S++ ACSH+  ++ GK S+  ++++   +  ++   + +ID+  + G I
Sbjct: 402 CNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKI 459

Query: 390 HEAYDLILNMPFDATASMWGSLLAS 414
             +  +   MP     S W +++A 
Sbjct: 460 DLSRQVFDKMPARDVVS-WNTMIAG 483



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 182/365 (49%), Gaps = 10/365 (2%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G ++ AR+VFD +P     ++N +I +Y+  G    A+ L+ +MLR    P +++T   V
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAP-NKYTFPFV 106

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L AC+A  D+   + +H  A  A +  ++FV TAL+D+Y +C     A  VF  MP R+ 
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 202 VTWSSMVAGFVQNELYEEALI-LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
           V W++M+AG+  + +Y  A+  L       GL  N  T+ S++   A   AL QG  +HA
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 261 VLCKTGFGSN---MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
              +     N   +   ++L+DMYAKC  +V A  VF G+  +N V W+ +I GF    R
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 318 SVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
             E   LF+ M   GL     T + S L  C+ +  +  G     L+ K   +  ++   
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTAS 345

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK--QLFGM 434
           + ++ +  +AGLI+EA      +    T S +G+LL+ C      E A +  K  Q   M
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNM 404

Query: 435 EPDNA 439
           EPD A
Sbjct: 405 EPDIA 409



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++T+ + + +C+   A   GK  H  +I  GL  +T   N LI+ Y+KCG I  +R+VF
Sbjct: 407 DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVF 466

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R +VSWNT+I  Y  +G  +EA  LF+ M  +G  P  + T   ++ AC+    V
Sbjct: 467 DKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAP-DDVTFICLIAACSHSGLV 525

Query: 152 FECKQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K       H + +   M+  +     ++D+ A+ GL+ +A +  +SMP + +V  W 
Sbjct: 526 TEGKHWFDTMTHKYGILPRMEHYI----CMVDLLARGGLLDEAYQFIQSMPLKADVRVWG 581

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           +++     ++  +    + R  Q LG E    F + S I + AG
Sbjct: 582 ALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAG 625


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 342/578 (59%), Gaps = 11/578 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNND---TLTSNILINFYSKCGLISGARKV 90
           STL + L   A+  A  +G   HA  +   L  +    L    L++ Y+KC  +  A +V
Sbjct: 203 STLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRV 262

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F  MP R  V+W+ +IG +    R  EA  LF +ML EG    S  +V+S L  CA+  D
Sbjct: 263 FHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLAD 322

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +    QLH    K+ +  ++    +LL +YAK GLI++A+  F+ +  ++ +++ ++++G
Sbjct: 323 LHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSG 382

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            VQN   EEA ++F++ Q   +E +  T+ S+I AC+ LAAL  GK  H  +   G    
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALE 442

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               +SL+DMYAKCG +  +  VF  +  ++VV WNTMI+G+  H    E   LF  M+ 
Sbjct: 443 TSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKN 502

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  P++ T+I +++ACSH G+V +GK +FD M  ++ +LP + HY CM+D+L R GL+ 
Sbjct: 503 QGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLD 562

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EAY  I +MP  A   +WG+LL +CR ++N++L +  ++ +  + P+  GN +LLSNI++
Sbjct: 563 EAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFS 622

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
           A  R++E A  R + +    KK    SW+EI         G ++HP   +IY +L+ ++ 
Sbjct: 623 AAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMV 682

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++KKLGY+ +T   L D+E+  K++ L++HSEKLA+ FG++ L     I + KNLR+CGD
Sbjct: 683 DIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGD 742

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K+ + +  R  IVRD NRFHHF NG CSC +FW
Sbjct: 743 CHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 213/384 (55%), Gaps = 8/384 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       G+  HA     GL+ D   S  LI+ Y +C     AR VF +M
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +V+WN ++  Y  +G    A+A  ++M   G    +  T+ S+L   A    +F+ 
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221

Query: 155 KQLHVFALKAAMDRN---VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             +H + L+A +++N   V +GTALLD+YAKC  +  A RVF  MP RN+VTWS+++ GF
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 212 VQNELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           V  +   EA  LF+   V GL + +  +++S +  CA LA L  G Q+HA++ K+G  ++
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHAD 341

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           + A++SL+ MYAK G + +A   F  I  K+ + +  ++SG  ++ ++ E  ++F+KMQ 
Sbjct: 342 LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQA 401

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGK-SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             + P+  T +S++ ACSH+  ++ GK S+  ++++   +  ++   + +ID+  + G I
Sbjct: 402 CNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKI 459

Query: 390 HEAYDLILNMPFDATASMWGSLLA 413
             +  +   MP     S W +++A
Sbjct: 460 DLSRQVFDKMPARDVVS-WNTMIA 482



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 182/365 (49%), Gaps = 10/365 (2%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G ++ AR+VFD +P     ++N +I +Y+  G    A+ L+ +MLR    P +++T   V
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAP-NKYTFPFV 106

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L AC+A  D+   + +H  A  A +  ++FV TAL+D+Y +C     A  VF  MP R+ 
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 202 VTWSSMVAGFVQNELYEEALI-LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
           V W++M+AG+  + +Y  A+  L       GL  N  T+ S++   A   AL QG  +HA
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 261 VLCKTGFGSN---MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
              +     N   +   ++L+DMYAKC  +V A  VF G+  +N V W+ +I GF    R
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 318 SVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
             E   LF+ M   GL   +  +  S L  C+ +  +  G     L+ K   +  ++   
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTAS 345

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK--QLFGM 434
           + ++ +  +AGLI+EA      +    T S +G+LL+ C      E A +  K  Q   M
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNM 404

Query: 435 EPDNA 439
           EPD A
Sbjct: 405 EPDIA 409



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++T+ + + +C+   A   GK  H  +I  GL  +T   N LI+ Y+KCG I  +R+VF
Sbjct: 407 DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVF 466

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R +VSWNT+I  Y  +G  +EA  LF+ M  +G  P  + T   ++ AC+    V
Sbjct: 467 DKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAP-DDVTFICLIAACSHSGLV 525

Query: 152 FECKQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K       H + +   M+  +     ++D+ A+ GL+ +A +  +SMP + +V  W 
Sbjct: 526 TEGKHWFDTMTHKYGILPRMEHYI----CMVDLLARGGLLDEAYQFIQSMPLKADVRVWG 581

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           +++     ++  +    + R  Q LG E    F + S I + AG
Sbjct: 582 ALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAG 625



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           L+ +   G ++ A +VF+ +P  +   +++++  +     +  A+ L+R      +  N+
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           +T   V+ AC+ L  L  G+ +HA     G  +++F +++L+D+Y +C     A  VF+ 
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEK 355
           +  ++VV WN M++G++ H      +     MQ   GL PN  T +S+L   +  G + +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 356 GKS 358
           G S
Sbjct: 221 GTS 223


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/585 (39%), Positives = 345/585 (58%), Gaps = 24/585 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS--NILINFYSKCGLISGARKVFD 92
           TL   + +C  +   VR   C   + G    +D   S  N ++  YS+ G +S AR+VF 
Sbjct: 143 TLSGVITACGDDVGLVRQLHCFVVVCG----HDCYASVNNAVLACYSRKGFLSEARRVFR 198

Query: 93  EMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           EM +   R  VSWN +I +   +    EAV LF  M+R G      FT++SVL A    +
Sbjct: 199 EMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRG-LKVDMFTMASVLTAFTCVK 257

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMV 208
           D+   +Q H   +K+    N  VG+ L+D+Y+KC G + +  +VFE +   + V W++M+
Sbjct: 258 DLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMI 317

Query: 209 AGF-VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +GF +  +L E+ L  FR  Q  G   +  +   V  AC+ L++   GKQVHA+  K+  
Sbjct: 318 SGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDV 377

Query: 268 GSNMFAAS-SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             N  + + +LV MY+KCG V DA  VF  + E N V  N+MI+G+++H   VE + LFE
Sbjct: 378 PYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            M +  + PN  T+I+VLSAC H G VE+G+ YF++M ++  + P   HYSCMID+LGRA
Sbjct: 438 LMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRA 497

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G + EA  +I  MPF+  +  W +LL +CR + N+ELA  AA +   +EP NA  +++LS
Sbjct: 498 GKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLS 557

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLE 498
           N+YA+  RWEE A  ++L+R+  VKK+   SW+EI  K         +HP I EI+  + 
Sbjct: 558 NMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMG 617

Query: 499 KLVEEMKKLGYKPETEHDL---HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           K++++MK+ GY P+    L    +VE   ++  L++HSEKLA+ FGL+    GVPI ++K
Sbjct: 618 KMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVK 677

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLRICGDCH+ +K  S + GRE  VRD +RFH F  G CSC D+W
Sbjct: 678 NLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 145/458 (31%), Positives = 227/458 (49%), Gaps = 46/458 (10%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG--------- 82
           +L T +  L++C  +R  + GK+ HA      +   T  SN     YSKCG         
Sbjct: 8   QLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSF 67

Query: 83  ----------------------LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
                                 LI  AR+VFDE+PQ  IVS+NT+I +Y   G     + 
Sbjct: 68  HLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLR 127

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           LF   +RE +     FT+S V+ AC    DV   +QLH F +    D    V  A+L  Y
Sbjct: 128 LF-EEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVVVCGHDCYASVNNAVLACY 184

Query: 181 AKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           ++ G +S+A RVF  M E   R+EV+W++M+    Q+    EA+ LFR     GL+ + F
Sbjct: 185 SRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMF 244

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC-GCVVDAYFVFSG 296
           T++SV+ A   +  L+ G+Q H ++ K+GF  N    S L+D+Y+KC G +V+   VF  
Sbjct: 245 TMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEE 304

Query: 297 IEEKNVVLWNTMISGFSRHAR-SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           I   ++VLWNTMISGFS +   S + +  F +MQ+ G  P++ +++ V SACS++     
Sbjct: 305 ITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSL 364

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GK    L +K       V   + ++ +  + G +H+A  +   MP   T S+  S++A  
Sbjct: 365 GKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSL-NSMIAGY 423

Query: 416 RNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYAA 451
             +      E+ + +LF   +E D A N +    + +A
Sbjct: 424 AQHG----VEVESLRLFELMLEKDIAPNSITFIAVLSA 457



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC-GLISGARK 89
            ++ T+ + L +    +  V G+  H  +I  G + ++   + LI+ YSKC G +   RK
Sbjct: 241 VDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRK 300

Query: 90  VFDEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           VF+E+    +V WNT+I  ++      ++ +  F  M R G  P  + +   V  AC+  
Sbjct: 301 VFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRP-DDCSFVCVTSACSNL 359

Query: 149 RDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
                 KQ+H  A+K+ +  N V V  AL+ +Y+KCG + DA RVF++MPE N V+ +SM
Sbjct: 360 SSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSM 419

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +AG+ Q+ +  E+L LF       +  N  T  +V+ AC     + +G++   ++ K  F
Sbjct: 420 IAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMM-KERF 478

Query: 268 GSNMFAA--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMI 323
                A   S ++D+  + G + +A  +   +      + W T++    +H  +VE+ +
Sbjct: 479 CIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHG-NVELAV 536


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 341/574 (59%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + + + A  R+   G+ CH   I  GL       + +++ Y +C  +  A KVFD +
Sbjct: 115 VLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNV 174

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               + ++N++I  +   G+   + ++  +M+R     +   +  +VL  CA+ ++V   
Sbjct: 175 SSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRN-VGQWDHVSYVAVLGHCASTKEVVLG 233

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H  ALK  ++ NV+VG+AL+D+Y KC    +A+RVFE +PE+N V+W++++  + QN
Sbjct: 234 SQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQN 293

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           EL+E+AL LF   ++ G+  N+FT +  + +CAGLA L  G  + A   KTG    +   
Sbjct: 294 ELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVC 353

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+K G V DA  VF  +  ++VV WN++I G++ H R+ E M  F  M  A   
Sbjct: 354 NALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEV 413

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T+I VLSAC+ +G+V++G  Y ++M+K+  V P   HY+CM+ +L R G + EA  
Sbjct: 414 PSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAER 473

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +         W SLL+SC+ YRN  L    A+Q+F ++P + G ++LLSN+YA   R
Sbjct: 474 FIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANR 533

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ V + R+L+R+  V+KE   SW+++  +        + HP + +I  KL++L++++K 
Sbjct: 534 WDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKV 593

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY P     LHDVED +K+E L++HSEKLAL FGL+    G  IRIMKN+RIC DCH  
Sbjct: 594 IGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVA 653

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S   GR  +VRD  RFH   +G CSC D+W
Sbjct: 654 IKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 200/387 (51%), Gaps = 12/387 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA+++      D +  N LI  Y KCG +  AR+VFD MP R  VS N ++  Y +
Sbjct: 35  GKAVHARVV-RAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYAS 93

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +GR ++A+AL    LR      +E+ +SS + A A  R     +Q H +A+KA +  + +
Sbjct: 94  SGRHRDALAL----LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPY 149

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V +A+L +Y +C  + +A +VF+++   N   ++SM+ GF+     + +  + R      
Sbjct: 150 VCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNV 209

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            +++  +  +V+  CA    ++ G QVH    K     N++  S+LVDMY KC    +A 
Sbjct: 210 GQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEAN 269

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + EKN+V W  +++ ++++    + + LF  M+  G+ PNE TY   L++C+ + 
Sbjct: 270 RVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLA 329

Query: 352 MVEKGKSYFDLMVKQHN--VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            ++ G +     +K  +  +LP     + ++++  ++G + +A  + L+MP     S W 
Sbjct: 330 TLKNGNALGACTMKTGHWGLLPVC---NALMNMYSKSGSVEDARRVFLSMPCRDVVS-WN 385

Query: 410 SLLASCRNY-RNLELAEIAAKQLFGME 435
           S++    ++ R  E  E     LF  E
Sbjct: 386 SIIIGYAHHGRAREAMEAFHDMLFAEE 412



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 3/296 (1%)

Query: 17  SSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
           S+S + S   N    +  +  A L  CA  +  V G   H + +   L  +    + L++
Sbjct: 198 STSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVD 257

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y KC     A +VF+ +P++ IVSW  I+ +YT N   ++A+ LF++M  EG  P +EF
Sbjct: 258 MYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRP-NEF 316

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T +  L +CA    +     L    +K      + V  AL+++Y+K G + DA RVF SM
Sbjct: 317 TYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSM 376

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           P R+ V+W+S++ G+  +    EA+  F          +  T   V+ ACA L  + +G 
Sbjct: 377 PCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGF 436

Query: 257 QVHAVLCK-TGFGSNMFAASSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
               ++ K  G        + +V +  + G + +A  F+ S     +VV W +++S
Sbjct: 437 YYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLS 492


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 339/553 (61%), Gaps = 8/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA++I     +D    + L++ Y K G    A+++FDEMP + +VSWN+++   +  G  
Sbjct: 142 HARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYL 201

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
              +  F  M  E     +E T+ SV+ ACA    + E K LH   +K  M     V  +
Sbjct: 202 GACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNS 261

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++Y K G +  AS++FE MP R+ V+W+SMV     N   E+ + LF   +  G+  +
Sbjct: 262 LINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPD 321

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           Q T+ +++ AC       Q + +HA + + GF +++  A++L+++YAK G +  +  +F 
Sbjct: 322 QATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFE 381

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I++++ + W  M++G++ HA   E + LF+ M + G+  +  T+  +LSACSH G+VE+
Sbjct: 382 EIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 441

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GK YF++M + + V P + HYSCM+D+LGR+G + +AY+LI +MP + ++ +WG+LL +C
Sbjct: 442 GKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGAC 501

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R Y N+EL +  A+QL  ++P +  N+++LSNIY+A   W + ++ R L+++  + +   
Sbjct: 502 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPG 561

Query: 476 KSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S++E        + G + HPR  EI++KLE+L+ ++++ G  P+TE  LHD+++  K +
Sbjct: 562 CSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVD 621

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           ++  HSEKLA+ FGL+    GVP+ I KNLRICGDCHS  KFAS +  R  I+RD  RFH
Sbjct: 622 MINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFH 681

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 682 HFADGLCSCRDYW 694



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 34/323 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + + +CA   A   GK  H  ++ +G++      N LIN Y K G +  A ++F+EM
Sbjct: 223 TLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 282

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN+++  +  NG  ++ + LF  M R G  P  + T+ ++L AC       + 
Sbjct: 283 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP-DQATMVALLRACTDTGLGRQA 341

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H +  +   + ++ + TALL++YAK G ++ +  +FE + +R+ + W++M+AG+  +
Sbjct: 342 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 401

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA+ LF      G+E +  T + ++ AC+    + +GK+   ++      S ++  
Sbjct: 402 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIM------SEVYRV 455

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
              +D Y+   C+VD                           RS  +   +E ++   + 
Sbjct: 456 EPRLDHYS---CMVDLL------------------------GRSGRLEDAYELIKSMPME 488

Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
           P+   + ++L AC   G VE GK
Sbjct: 489 PSSGVWGALLGACRVYGNVELGK 511



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 171/353 (48%), Gaps = 23/353 (6%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTII-----GSYTTNGREQ--EAVALFINMLREGKT--- 131
           G   G   VF++   R  V WN+I+     G+  ++ R        L     +   T   
Sbjct: 46  GQRGGLEIVFNQQLTRLAVPWNSIVSPVRCGTSISHNRSFAFRHTDLIPKQFKRFNTNKG 105

Query: 132 -----PYSEFTV-----SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
                  S+F V      S++ A ++   V  C  +H   +K+    + F+G  L+ +Y 
Sbjct: 106 CCIFREASQFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYF 165

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTIS 240
           K G   DA R+F+ MP ++ V+W+S+++G          L  F R +   G + N+ T+ 
Sbjct: 166 KLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLL 225

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           SV+ ACA + AL +GK +H V+ K G        +SL++MY K G +  A  +F  +  +
Sbjct: 226 SVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR 285

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++V WN+M+   + +  + + M LF  M++AG++P++ T +++L AC+  G+  + +S  
Sbjct: 286 SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES-I 344

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
              + +     ++   + ++++  + G ++ + D+   +  D     W ++LA
Sbjct: 345 HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLA 396



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 146/338 (43%), Gaps = 51/338 (15%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ A L++C       + +  HA I   G N D + +  L+N Y+K G ++ +  +F+E
Sbjct: 323 ATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEE 382

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  ++W  ++  Y  +   +EA+ LF  M++EG       T + +L AC+    V E
Sbjct: 383 IKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG-VEVDHVTFTHLLSACSHSGLVEE 441

Query: 154 CKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
            K+       V+ ++  +D      + ++D+  + G + DA  + +SMP E +   W ++
Sbjct: 442 GKKYFEIMSEVYRVEPRLDHY----SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL 497

Query: 208 VAG---FVQNELYEEALILFRRAQVLGL---EYNQFTISSVICACAGLAALIQGKQVHAV 261
           +     +   EL +E        Q+L L   ++  + + S I + AGL       +V A+
Sbjct: 498 LGACRVYGNVELGKEVA-----EQLLSLDPSDHRNYIMLSNIYSAAGLWR--DASKVRAL 550

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + +     N              GC        S IE  N +  +  + G   H RS E+
Sbjct: 551 MKERRLTRNP-------------GC--------SFIEHGNKI--HRFVVGDQLHPRSDEI 587

Query: 322 MI----LFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
                 L  K+++AG  P  +  +  +     + M+ K
Sbjct: 588 HTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINK 625


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/575 (36%), Positives = 339/575 (58%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L +C+     +  K+ HA II  G ++  +  N L+  Y K G++  A+KV   M
Sbjct: 1151 TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 1210

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
            PQ   V+WN +IG +  N    EAV  +  ++RE   P +  T+ SVL AC+A  D+ + 
Sbjct: 1211 PQPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITMVSVLGACSAPDDLLKH 1269

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
               +H   +    + + +V  +L+ +YAKCG ++ ++ +F+ +  ++ +TW++MVA    
Sbjct: 1270 GMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 1329

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +   EEAL +F   + +G+  +QF+ S  + A A LA L +G+Q+H ++ K GF S++  
Sbjct: 1330 HGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHV 1389

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             ++ +DMY KCG + D   +      ++ + WN +IS F+RH    +    F +M + G 
Sbjct: 1390 TNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 1449

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P+  T++S+LSAC+H G+V++G +Y+D M ++  V P + H  C+ID+LGR+G +  A 
Sbjct: 1450 KPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAE 1509

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
              I  MP       W SLLA+CR + NLELA   A+ L  ++P +   ++L SN+ A + 
Sbjct: 1510 GFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSG 1569

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            +WE+V   RK +  + +KK+ + SWV++K        G++ HP+ + I +KL +L++  K
Sbjct: 1570 KWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTK 1629

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            + GY P+T   LHD+++ +K+  L +HSE+LAL FGL+       +RI KNLR+CGDCHS
Sbjct: 1630 EAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHS 1689

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              KF S I GR+ ++RD  RFHHF+ G CSC D+W
Sbjct: 1690 VYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 233/412 (56%), Gaps = 2/412 (0%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L++F+SKCG +  A  +F  M +R +VSWN +IG Y   G   ++  +F +MLR G  P 
Sbjct: 172 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP- 230

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
             +T+ SVL A A    +    Q+H    +        V   L++ YAK G +  A  + 
Sbjct: 231 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 290

Query: 194 ESMPERNEVTWSSMVAGFVQNELYE-EALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           + M +++  + ++++ G+    +Y  +AL LF+    + +  +   + S++  CA LA+ 
Sbjct: 291 KGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASF 350

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             G Q+HA   K     ++   ++L+DMYAK G + DA   F  +EEKNV+ W ++ISG+
Sbjct: 351 ALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGY 410

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           ++H      + L++KM+  G  PN+ T++S+L ACSH G+  +G   F+ MV ++N+ P 
Sbjct: 411 AKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPR 470

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
             HYSCM+D+  R GL+ EAY+L+  +     AS+WG++L +   Y  + L + AA  LF
Sbjct: 471 AEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLF 530

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK 484
            M+P+N+ N+++L++IY+A   W++  + RKL+ +   KK    S+ +   K
Sbjct: 531 NMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 215/398 (54%), Gaps = 6/398 (1%)

Query: 52   GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            G+  H  ++ +GL+++    N L+  YS+ G    A  VF  M +R ++SWN+++  Y  
Sbjct: 1067 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 1126

Query: 112  NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            +G+  + + +   +L+ GK   +  T +S L AC+    + E K +H   + A     + 
Sbjct: 1127 DGKCLDGLKILAELLQMGKV-MNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLI 1185

Query: 172  VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
            VG AL+ +Y K G++ +A +V ++MP+ + VTW++++ G  +NE   EA+  ++  +  G
Sbjct: 1186 VGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKG 1245

Query: 232  LEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            +  N  T+ SV+ AC+    L++ G  +HA +  TGF S+ +  +SL+ MYAKCG +  +
Sbjct: 1246 IPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSS 1305

Query: 291  YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             ++F G+  K+ + WN M++  + H    E + +F +M+  G++ ++ ++   L+A +++
Sbjct: 1306 NYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANL 1365

Query: 351  GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
             ++E+G+    L++K      ++   +  +D+ G+ G +H+   + L  P + +   W  
Sbjct: 1366 AVLEEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKM-LPQPINRSRLSWNI 1423

Query: 411  LLASCRNYRNLELAEIAAKQL--FGMEPDNAGNHLLLS 446
            L+++   +   + A     ++   G +PD+     LLS
Sbjct: 1424 LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 1461



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 195/376 (51%), Gaps = 3/376 (0%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF 77
           + A+   S+N    + S     LQ C  ++A  +G + H  +I  G  +D   +  LI F
Sbjct: 15  AEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIF 74

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y K G +  AR VFD MP+R +VSW  ++  Y+ NGR ++A  LF +M R      ++FT
Sbjct: 75  YVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDM-RHCGVKANQFT 133

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
             S L AC + R +    Q+     K     N+FV +AL+D ++KCG + DAS +F +M 
Sbjct: 134 YGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMM 193

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           ER+ V+W++M+ G+      +++  +FR     GL  + +T+ SV+ A A    LI   Q
Sbjct: 194 ERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQ 253

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA- 316
           +H ++ + G+GS       L++ YAK G +  A  +  G+ +K++     +I+G++    
Sbjct: 254 IHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGI 313

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
            SV+ + LF++M Q  +  ++    S+L+ C+++     G       +K      +V   
Sbjct: 314 YSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSY-DVAMG 372

Query: 377 SCMIDILGRAGLIHEA 392
           + +ID+  ++G I +A
Sbjct: 373 NALIDMYAKSGEIEDA 388



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 199/382 (52%), Gaps = 4/382 (1%)

Query: 33   LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
            L+ +   L+  +   + + GK  HA  I   +N     +N LIN YSK G I  AR VFD
Sbjct: 744  LNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFD 803

Query: 93   EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-AKRDV 151
            EM  R   SW+T++  Y   G  +EAV LF  M   G  P + F V+S++ AC+ +    
Sbjct: 804  EMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP-NGFMVASLITACSRSGYMA 862

Query: 152  FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             E  Q+H F +K  +  +V+VGTAL+  Y   GL+ +A ++FE MP+ N V+W+S++ G+
Sbjct: 863  DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGY 922

Query: 212  VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
              +    E L +++R +  G+  NQ T ++V  +C  L   + G QV   + + GF  ++
Sbjct: 923  SDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSV 982

Query: 272  FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              A+SL+ M++    V +A +VF  + E +++ WN MIS ++ H    E +  F  M+  
Sbjct: 983  SVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL 1042

Query: 332  GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
                N  T  S+LS CS +  ++ G+    L+VK   +  NV   + ++ +   AG   +
Sbjct: 1043 HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKL-GLDSNVCICNTLLTLYSEAGRSED 1101

Query: 392  AYDLILNMPFDATASMWGSLLA 413
            A +L+     +     W S++A
Sbjct: 1102 A-ELVFQAMTERDLISWNSMMA 1122



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 161/315 (51%), Gaps = 1/315 (0%)

Query: 34   STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            +T      SC      V G      II  G  +    +N LI+ +S    +  A  VFD 
Sbjct: 948  NTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDH 1007

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            M +  I+SWN +I +Y  +G  +E++  F + +R      +  T+SS+L  C++  ++  
Sbjct: 1008 MNECDIISWNAMISAYAHHGLCRESLRCF-HWMRHLHNETNSTTLSSLLSVCSSVDNLKW 1066

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             + +H   +K  +D NV +   LL +Y++ G   DA  VF++M ER+ ++W+SM+A +VQ
Sbjct: 1067 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 1126

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +    + L +      +G   N  T +S + AC+    LI+ K VHA++   GF   +  
Sbjct: 1127 DGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIV 1186

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             ++LV MY K G +++A  V   + + + V WN +I G + +    E +  ++ +++ G+
Sbjct: 1187 GNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGI 1246

Query: 334  HPNEQTYISVLSACS 348
              N  T +SVL ACS
Sbjct: 1247 PANYITMVSVLGACS 1261



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 190/366 (51%), Gaps = 7/366 (1%)

Query: 51   RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
             G   H  ++  G+  D      L++FY   GL+  A+K+F+EMP   +VSW +++  Y+
Sbjct: 864  EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 923

Query: 111  TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
             +G   E + ++  M +EG +  ++ T ++V  +C    D     Q+    ++   + +V
Sbjct: 924  DSGNPGEVLNVYQRMRQEGVSG-NQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSV 982

Query: 171  FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
             V  +L+ +++    + +A  VF+ M E + ++W++M++ +  + L  E+L  F   + L
Sbjct: 983  SVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL 1042

Query: 231  GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
              E N  T+SS++  C+ +  L  G+ +H ++ K G  SN+   ++L+ +Y++ G   DA
Sbjct: 1043 HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDA 1102

Query: 291  YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
              VF  + E++++ WN+M++ + +  + ++ + +  ++ Q G   N  T+ S L+ACS+ 
Sbjct: 1103 ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 1162

Query: 351  GMVEKGKSYFDLMVKQ--HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
              + + K    L++    H+ L      + ++ + G+ G++ EA  ++  MP       W
Sbjct: 1163 ECLIESKIVHALIIVAGFHDFL---IVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTW 1218

Query: 409  GSLLAS 414
             +L+  
Sbjct: 1219 NALIGG 1224



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 124/239 (51%), Gaps = 4/239 (1%)

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           GR  EA+ L    L    T         +L  C  K+   +   +H   +      ++ +
Sbjct: 12  GRLAEALKL----LSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHL 67

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
            T L+  Y K G +  A  VF+ MPER+ V+W++MV+G+ QN  +E+A +LF   +  G+
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           + NQFT  S + AC  L  L  G QV   + K  F  N+F  S+LVD ++KCG + DA +
Sbjct: 128 KANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASY 187

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
           +F  + E++VV WN MI G++    + +   +F  M + GL P+  T  SVL A +  G
Sbjct: 188 LFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGG 246



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 3/176 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + L  CA   +   G   HA  +    + D    N LI+ Y+K G I  A++ FDEM 
Sbjct: 337 LCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME 396

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-C 154
           ++ ++SW ++I  Y  +G    AV+L+  M  +G  P ++ T  S+L AC+      E C
Sbjct: 397 EKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKP-NDVTFLSLLFACSHTGLTAEGC 455

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           +  +    K  +       + ++D++A+ GL+ +A  +   +  + N   W +++ 
Sbjct: 456 ECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILG 511


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 339/553 (61%), Gaps = 8/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA++I     +D    + L++ Y K G    A+++FDEMP + +VSWN+++   +  G  
Sbjct: 85  HARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYL 144

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
              +  F  M  E     +E T+ SV+ ACA    + E K LH   +K  M     V  +
Sbjct: 145 GACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNS 204

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++Y K G +  AS++FE MP R+ V+W+SMV     N   E+ + LF   +  G+  +
Sbjct: 205 LINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPD 264

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           Q T+ +++ AC       Q + +HA + + GF +++  A++L+++YAK G +  +  +F 
Sbjct: 265 QATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFE 324

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I++++ + W  M++G++ HA   E + LF+ M + G+  +  T+  +LSACSH G+VE+
Sbjct: 325 EIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 384

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GK YF++M + + V P + HYSCM+D+LGR+G + +AY+LI +MP + ++ +WG+LL +C
Sbjct: 385 GKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGAC 444

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R Y N+EL +  A+QL  ++P +  N+++LSNIY+A   W + ++ R L+++  + +   
Sbjct: 445 RVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPG 504

Query: 476 KSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S++E        + G + HPR  EI++KLE+L+ ++++ G  P+TE  LHD+++  K +
Sbjct: 505 CSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVD 564

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           ++  HSEKLA+ FGL+    GVP+ I KNLRICGDCHS  KFAS +  R  I+RD  RFH
Sbjct: 565 MINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFH 624

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 625 HFADGLCSCRDYW 637



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 34/323 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + + +CA   A   GK  H  ++ +G++      N LIN Y K G +  A ++F+EM
Sbjct: 166 TLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 225

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN+++  +  NG  ++ + LF  M R G  P  + T+ ++L AC       + 
Sbjct: 226 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP-DQATMVALLRACTDTGLGRQA 284

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H +  +   + ++ + TALL++YAK G ++ +  +FE + +R+ + W++M+AG+  +
Sbjct: 285 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 344

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EA+ LF      G+E +  T + ++ AC+    + +GK+   ++      S ++  
Sbjct: 345 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIM------SEVYRV 398

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
              +D Y+   C+VD                           RS  +   +E ++   + 
Sbjct: 399 EPRLDHYS---CMVDLL------------------------GRSGRLEDAYELIKSMPME 431

Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
           P+   + ++L AC   G VE GK
Sbjct: 432 PSSGVWGALLGACRVYGNVELGK 454



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 128/229 (55%), Gaps = 2/229 (0%)

Query: 132 PYSEFT-VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
           P+  ++ V S++ A ++   V  C  +H   +K+    + F+G  L+ +Y K G   DA 
Sbjct: 58  PFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQ 117

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVICACAGL 249
           R+F+ MP ++ V+W+S+++G          L  F R +   G + N+ T+ SV+ ACA +
Sbjct: 118 RLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADM 177

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
            AL +GK +H V+ K G        +SL++MY K G +  A  +F  +  +++V WN+M+
Sbjct: 178 GALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMV 237

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
              + +  + + M LF  M++AG++P++ T +++L AC+  G+  + +S
Sbjct: 238 VIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES 286



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 146/338 (43%), Gaps = 51/338 (15%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ A L++C       + +  HA I   G N D + +  L+N Y+K G ++ +  +F+E
Sbjct: 266 ATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEE 325

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  ++W  ++  Y  +   +EA+ LF  M++EG       T + +L AC+    V E
Sbjct: 326 IKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG-VEVDHVTFTHLLSACSHSGLVEE 384

Query: 154 CKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
            K+       V+ ++  +D      + ++D+  + G + DA  + +SMP E +   W ++
Sbjct: 385 GKKYFEIMSEVYRVEPRLDHY----SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL 440

Query: 208 VAG---FVQNELYEEALILFRRAQVLGL---EYNQFTISSVICACAGLAALIQGKQVHAV 261
           +     +   EL +E        Q+L L   ++  + + S I + AGL       +V A+
Sbjct: 441 LGACRVYGNVELGKEV-----AEQLLSLDPSDHRNYIMLSNIYSAAGLWR--DASKVRAL 493

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + +     N              GC        S IE  N +  +  + G   H RS E+
Sbjct: 494 MKERRLTRNP-------------GC--------SFIEHGNKI--HRFVVGDQLHPRSDEI 530

Query: 322 MI----LFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
                 L  K+++AG  P  +  +  +     + M+ K
Sbjct: 531 HTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINK 568


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 343/574 (59%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + L++     + + GK  H   +    + +      L++ Y+KCG I  A  +F+ +
Sbjct: 251 VLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMI 310

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P   ++ W+ +I  Y  + + ++A  +F+ M+R    P +EF++S VL ACA    +   
Sbjct: 311 PHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVP-NEFSLSGVLQACANIAFLELG 369

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  A+K   +  +FVG AL+D+YAKC  + ++  +F S+ + NEV+W++++ G+ Q+
Sbjct: 370 EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQS 429

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+AL +F   +   +   Q T SSV+ ACA  +++    Q+H+++ K+ F ++    
Sbjct: 430 GFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVC 489

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+D YAKCG + DA  VF  I E +VV WN++IS ++ H R+   + LF++M ++ + 
Sbjct: 490 NSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIK 549

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            N+ T++S+LS C   G+V +G   F+ M+  H + P++ HY+C++ +LGRAG + +A  
Sbjct: 550 ANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALK 609

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I ++P   +  +W +LL+SC  ++N+ L   AA+++  +EP +   ++LLSN+YAA   
Sbjct: 610 FIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGI 669

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
            +EVA  RK +R+  VKKE   SWVEIKG+         +HP +  I + LE L  +  +
Sbjct: 670 LDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASR 729

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            GY P+    LHDV++  K  +L  HSE+LAL +GL    PG PIRIMKNLR C DCH+ 
Sbjct: 730 EGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTM 789

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S+I  RE IVRD+NRFHHF  G CSC D+W
Sbjct: 790 FKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 187/328 (57%), Gaps = 3/328 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           LQ C        G+  HA+++  G     DT  +N+L+NFY+K G ++ AR++FD MP+R
Sbjct: 52  LQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPER 111

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
             VS+ T++  Y   G  +EA+ LF  + REG    + F ++++L              +
Sbjct: 112 NRVSFVTLMQGYALRGEFEEALELFRRLQREGHE-VNHFVLTTILKVLVTMDAPGLACGI 170

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A K   DRN FVGTAL+D Y+ CG +  A  VF+ +  ++ VTW++MV+ + +N++ 
Sbjct: 171 HACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIP 230

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           E AL  F + ++ G + N F ++S + A   L++ + GK +H    KT + +      +L
Sbjct: 231 EYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGAL 290

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +DMYAKCG + DA+ +F  I   +V+LW+ +IS +++  ++ +   +F +M ++ + PNE
Sbjct: 291 LDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNE 350

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVK 365
            +   VL AC++I  +E G+   +L +K
Sbjct: 351 FSLSGVLQACANIAFLELGEQIHNLAIK 378



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 183/358 (51%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L   L+      AP      HA    +G + +      LI+ YS CG +  AR VFD +
Sbjct: 150 VLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGI 209

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             +  V+W  ++  Y+ N   + A+  F  M   G  P + F ++S L A          
Sbjct: 210 VGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKP-NPFVLTSALKAAVCLSSALLG 268

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H  ++K   D    VG ALLD+YAKCG I DA  +FE +P  + + WS +++ + Q+
Sbjct: 269 KGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQS 328

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+A  +F R     +  N+F++S V+ ACA +A L  G+Q+H +  K G+ S +F  
Sbjct: 329 CQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVG 388

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKC  + ++  +FS +++ N V WNT+I G+ +   + + + +F +M+ A + 
Sbjct: 389 NALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHML 448

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             + T+ SVL AC++   ++       L +++     +    + +ID   + G I +A
Sbjct: 449 STQVTFSSVLRACANTSSIKHAVQIHSL-IEKSTFNNDTIVCNSLIDTYAKCGFIRDA 505


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/559 (38%), Positives = 333/559 (59%), Gaps = 19/559 (3%)

Query: 52  GKVCHAK-IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+V  A+ +  M    D + S  +I      G +S AR++FDEMPQR +V+W ++I  Y 
Sbjct: 154 GRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYA 213

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +   A  LF     E     +E T +++L        + E  +L     KA   + V
Sbjct: 214 MNNKVDVARKLF-----EVMPDKNEVTWTAMLKGYTRSGRINEAAEL----FKAMPVKPV 264

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
                ++  +   G +  A  VF+ M E+++ TWS+++  + +     EAL LF   Q  
Sbjct: 265 AACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQRE 324

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  N  +I S++  C  LA+L  G+QVH+ L ++ F  +++ +S L+ MY KCG +V  
Sbjct: 325 GVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTG 384

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF     K++V+WN++I+G+++H    + + +F +M  +G  P+E T+I VLSAC + 
Sbjct: 385 KRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYT 444

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G V++G   F+ M  ++ V     HY+CM+D+LGRAG ++EA +LI NMP +A A +WG+
Sbjct: 445 GKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGA 504

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL++CR ++NL+LAEIAAK+L  +EP +AG ++LLSN+YA+  RW++VA  RK +R   V
Sbjct: 505 LLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNV 564

Query: 471 KKEKSKSWVEIK---------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            K    SW+E+          G  +HP    I  KLEKL   +++ GY P+    +HDV+
Sbjct: 565 SKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVD 624

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K   L HHSEK+A+ +GL+ +  G PIR+MKNLR+CGDCHS +K  +++ GRE I+R
Sbjct: 625 EEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILR 684

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF +G CSC DFW
Sbjct: 685 DANRFHHFKDGLCSCRDFW 703



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 180/405 (44%), Gaps = 85/405 (20%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM- 125
           +T++ N L++ Y K G+IS ARKVFD+MP+R +VSW +++  Y   G   EA  LF  M 
Sbjct: 77  NTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMP 136

Query: 126 --------------LREGKT----------PYSEFTVSSVLCA--CAAKRDVFECKQLHV 159
                         + +G+           P  +   S+ +    C+  R + E +++  
Sbjct: 137 EKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGR-LSEAREI-- 193

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
                   RNV   T+++  YA    +  A ++FE MP++NEVTW++M+ G+ ++    E
Sbjct: 194 --FDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINE 251

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A  LF+   V             + AC G+                GFG N         
Sbjct: 252 AAELFKAMPV-----------KPVAACNGMI--------------MGFGLN--------- 277

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
                G V  A +VF  ++EK+   W+ +I  + R    +E + LF  MQ+ G+ PN  +
Sbjct: 278 -----GEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPS 332

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            IS+LS C  +  ++ G+     +V+ H  L +++  S +I +  + G      DL+   
Sbjct: 333 IISILSVCGSLASLDHGRQVHSQLVRSHFDL-DIYVSSVLITMYIKCG------DLVTGK 385

Query: 400 P-FDATAS----MWGSLLASCRNYRNLELAEIAAKQLF--GMEPD 437
             FD  +S    MW S++A    +   E A     ++F  G  PD
Sbjct: 386 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPD 430



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 129/291 (44%), Gaps = 56/291 (19%)

Query: 75  INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
           I+++++ G I  AR +FD++  + + SWN I+  Y  N R  EA  LF       K P  
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLF------DKMP-- 74

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
                                           +RN      L+  Y K G+IS+A +VF+
Sbjct: 75  --------------------------------ERNTISWNGLVSGYVKNGMISEARKVFD 102

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
            MPERN V+W+SMV G+VQ  L +EA +LF R              +V+     L  LI+
Sbjct: 103 KMPERNVVSWTSMVRGYVQEGLIDEAELLFWR----------MPEKNVVSWTVMLGGLIE 152

Query: 255 GKQVHAV--LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             +V     L       ++ A+++++      G + +A  +F  + ++NVV W +MISG+
Sbjct: 153 DGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGY 212

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           + + +      LFE M       NE T+ ++L   +  G + +    F  M
Sbjct: 213 AMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRSGRINEAAELFKAM 259



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 3/179 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
             ++ + L  C    +   G+  H++++    + D   S++LI  Y KCG +   ++VFD
Sbjct: 330 FPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFD 389

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
               + IV WN+II  Y  +G  ++A+ +F  M   G  P  E T   VL AC     V 
Sbjct: 390 RFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAP-DEITFIGVLSACGYTGKVK 448

Query: 153 ECKQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           E  ++      K  +D+       ++D+  + G +++A  + E+MP E + + W ++++
Sbjct: 449 EGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLS 507



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           ++ F S+       +  +A+ G +  A  +F  ++ K V  WN +++G+  + R  E   
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF+KM +     N  ++  ++S     GM+ + +  FD M ++     NV  ++ M+   
Sbjct: 69  LFDKMPER----NTISWNGLVSGYVKNGMISEARKVFDKMPER-----NVVSWTSMVRGY 119

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
            + GLI EA  L   MP     S W  +L        ++     A++LF M P
Sbjct: 120 VQEGLIDEAELLFWRMPEKNVVS-WTVMLGGLIEDGRVD----EARRLFDMIP 167


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/610 (37%), Positives = 348/610 (57%), Gaps = 48/610 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L +  ++CA     V  K  H   I  G N D +  N LI+ + KC  ++GAR VFD+M
Sbjct: 79  VLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDM 138

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW ++   Y   G  ++ + LF  M   G    S  TVSS+L ACA   D  + 
Sbjct: 139 VVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANS-LTVSSILPACA---DYIKL 194

Query: 155 -KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H F L+  M+ NV+V +AL+++YA    +  A  VF+SM  R+ V+W+ M+  +  
Sbjct: 195 GREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFL 254

Query: 214 NELYEEALILFRRAQVLGLEYNQ-----------------------------------FT 238
           N+ YE  L LF + +  G++ NQ                                    T
Sbjct: 255 NKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRIT 314

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           I S +  C  L +L  GK++H  + +  F  ++   ++LV +YAKCG +  +  VF+ + 
Sbjct: 315 IVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMP 374

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            K+VV WNTMI   S H +  E +ILF KM  +G+ PN  T+I VLS CSH  + ++G  
Sbjct: 375 RKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLL 434

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            F+ M  +H++ P+  HYSCM+D+L RAG + EAYD I  MP + TA+ WG+LL +CR Y
Sbjct: 435 VFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVY 494

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
           +N+EL  +AA QLF +EPDNAGN++LLSNI    ++W E +  RK++RD  + K   +SW
Sbjct: 495 KNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSW 554

Query: 479 VEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           V++K        G +++ +   IY  L+++ E+M+  GY+P T+  L +V+  +++E L 
Sbjct: 555 VQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLC 614

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
            HSE+LA+ FG++       +R+ KNLRICGDCH+ +K  ++I G + IVRD  RFHHF 
Sbjct: 615 SHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFR 674

Query: 591 NGSCSCWDFW 600
           +G C+C DFW
Sbjct: 675 DGYCTCNDFW 684



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 152/273 (55%), Gaps = 3/273 (1%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G +  A  +FD++P+  + +W  +I  +T +G  ++A+ ++  +L     P  +F + SV
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRP-DKFVLLSV 83

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
             ACAA  D+   K++H  A++   ++++ +G AL+D++ KC  ++ A  VF+ M  ++ 
Sbjct: 84  AKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDV 143

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V+W+SM   +V   +  + ++LFR   + G+  N  T+SS++ ACA    L  G++VH  
Sbjct: 144 VSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL--GREVHGF 201

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + +     N++ +S+LV+MYA    +  A  VF  +  +++V WN M++ +  +      
Sbjct: 202 ILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERG 261

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
           + LF +M++ G+  N+ ++ + +S C   G  E
Sbjct: 262 LGLFHQMRKEGIKLNQASWNAAISGCMQNGQHE 294


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 343/585 (58%), Gaps = 13/585 (2%)

Query: 26  ANANATELSTLQATLQSCA--RERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           A+    + ST+ A L + A  +E     G  C A  IG G  +  LT   LI+ YSKCG 
Sbjct: 202 ADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTG--LISLYSKCGD 259

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           ++ AR +F  + +  ++++N +I  +T NG  + +V LF  +L  G+   S   V  +  
Sbjct: 260 VNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPL 319

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
                     C  +H F +K+ +  N  V TA   +Y K   I  A  +F+  PE+  V 
Sbjct: 320 HSPFGHLHLAC-SIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVA 378

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W++M++G+ QN   E A+ LF+         N  TI++++ ACA L +L  GK VH ++ 
Sbjct: 379 WNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIK 438

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
                 N++ +++LVDMYAKCG + +A+ +F  + EKN V WNTMI G+  H    E + 
Sbjct: 439 SENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALK 498

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           L+ +M   G +P+  T++SVL ACSH G+V +G+  F  MV ++ + P + HY+CM+DIL
Sbjct: 499 LYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDIL 558

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
           GR+G + +A + I  MP +   ++WG+LL +C  +++ ++A +A+++LF ++P + G ++
Sbjct: 559 GRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYV 618

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYS 495
           LLSNIY+  R + + A  R++++  ++ K    + +E+         G R+H    +IY+
Sbjct: 619 LLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYA 678

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           KLEKL  +M+++GY+ ET   LHDVE+  K+  +  HSEKLA+ FGL+   PG  IRI+K
Sbjct: 679 KLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIK 738

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+C DCH+  KF S+I  R  +VRD NRFHHF +G CSC D+W
Sbjct: 739 NLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 186/397 (46%), Gaps = 9/397 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+ I  G   D  T   L            AR +F  +P+  I  +N ++  ++ N   
Sbjct: 32  HAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSP 91

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             +++L+ ++ R        FT +  + AC+  + +     LH  ++      NVFVG+A
Sbjct: 92  SSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLM---LLHAHSIIDGYGSNVFVGSA 148

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D+Y K   +  A +VF+ MPER+ V W++M+ G V+N  +++++ LFR     G+  +
Sbjct: 149 LVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVD 208

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+++V+ A A L  L  G  +  +  K GFG   +  + L+ +Y+KCG V  A  +F 
Sbjct: 209 SSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFR 268

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I   +++ +N MISGF+ +  +   + LF ++  +G   +  T + ++   S  G +  
Sbjct: 269 RINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHL 328

Query: 356 GKSYFDLMVKQHNVL-PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
             S     VK   +L P V   +    I  +   I  A  L    P + T   W ++++ 
Sbjct: 329 ACSIHGFCVKSGIILNPTV--STAFTAIYNKLNEIDLARHLFDESP-EKTVVAWNAMISG 385

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
                + E A    K++  M+ +   N + ++ I +A
Sbjct: 386 YTQNGSTETAISLFKEM--MKTEFTPNAVTITTILSA 420


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/551 (37%), Positives = 329/551 (59%), Gaps = 10/551 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L  C    A   GK  HA ++ M   ++T   N L+  YSKCG++  A  VF+ +
Sbjct: 216 TYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESL 275

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            QR I+SW   I  +  +G  ++A+  F +M+RE     +EFT S VL +C   +D  + 
Sbjct: 276 RQRNIISWTASINGFYQHGDFKKALKQF-SMMRESGIEPNEFTFSIVLASCGCVKDFIDG 334

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQ 213
           +  H   +K  M   VFVGTA++D+Y+  G + +A + F+ M    + V+W++++AG+V 
Sbjct: 335 RMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVL 394

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           NE  E+A+  F R     +  N+FT S++  AC+   +L    Q+H+ L K+   SN+  
Sbjct: 395 NEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHV 454

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           ASSL++ Y +CG + +A  VF+ I + +VV WN++I  +S++    + + L  KM + G 
Sbjct: 455 ASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGN 514

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P   T+++VLSACSH G+V++G+ +F  MV+ +++ P   H SCM+DILGRAG +  A 
Sbjct: 515 KPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENAL 574

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           D I  +    TAS+W  LLA+CR   NL++AE  A+++  +EP++A  ++ LSN+YA   
Sbjct: 575 DFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVG 634

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RW +    R+L+   E+ KE   SW+E+  K        + HP + ++Y KL++LV +++
Sbjct: 635 RWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQ 694

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY P T   LH      K++L+++HSEKLA+ FGL+ L PG PIR++KNLR+C DC+S
Sbjct: 695 DIGYSPPTTTVLHPESRQPKEQLILYHSEKLAVCFGLLSLPPGKPIRVLKNLRVCLDCYS 754

Query: 566 FMKFASRIAGR 576
            MK+ SRI  R
Sbjct: 755 TMKYISRITDR 765



 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 170/507 (33%), Positives = 271/507 (53%), Gaps = 71/507 (14%)

Query: 44   ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN 103
            AR+RA  RG+  HA ++ +GL   T  +  L++FY++CG +S ARK+FD++P   I  W 
Sbjct: 814  ARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWI 873

Query: 104  TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK 163
             + G+    G  +EA++ F  M +EG  P ++F + S+L AC    D    + +H   LK
Sbjct: 874  VLTGACARRGFYEEALSAFSEMQKEGLRP-NQFVLPSILKACGHLSDRRTGENMHTVILK 932

Query: 164  AA-------------------------------MDRNVFVGTALLDVYAKCGLISDA--- 189
             +                               +D+++ V  A++  YA+ G + +A   
Sbjct: 933  NSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBL 992

Query: 190  --------------------------------SRVFESMP----ERNEVTWSSMVAGFVQ 213
                                            S VF  M     E + V+W+S+++GFVQ
Sbjct: 993  VQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQ 1052

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N    E    F+     G   +  TISS++ AC  +A L  GK++H      G   +++ 
Sbjct: 1053 NFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYV 1112

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             S+LVDMYAKCG + +A  +F  + E+N V WN++I G++ H    E + LF +M+++  
Sbjct: 1113 RSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDT 1172

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
              +  T+ +VL+ACSH GMVE G+S F  M +++ + P + HY+CM+D+LGRAG + EAY
Sbjct: 1173 KLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAY 1232

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            DLI  MP +    +WG+LL +CRN+ N+ELAE+AA+ LF +EP++ G+ LLLSN+YA   
Sbjct: 1233 DLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAG 1292

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVE 480
            RW   A+ +K+++  +  K    SW+E
Sbjct: 1293 RWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 232/479 (48%), Gaps = 17/479 (3%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L  C RE     G+  H  ++ +GL +D      LI+ Y+KCG +  A +V+D+M   
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
              + N +I +Y  NG   +A  +F+ +   G  P + +T S++L  C     + E KQL
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRP-NHYTYSTMLAVCGTISAIQEGKQL 236

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   +K        VG ALL +Y+KCG++ +A  VFES+ +RN ++W++ + GF Q+  +
Sbjct: 237 HAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDF 296

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           ++AL  F   +  G+E N+FT S V+ +C  +   I G+  H  + K G  S +F  +++
Sbjct: 297 KKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAI 356

Query: 278 VDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           +DMY+  G + +A   F  +    + V WN +I+G+  + +  + M  F +M +  +  N
Sbjct: 357 IDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACN 416

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           E TY ++  ACS    +         ++K  NV  N+   S +I+   + G +  A  + 
Sbjct: 417 EFTYSNIFKACSSFPSLATTVQIHSRLIKS-NVESNLHVASSLIEAYTQCGSLENAVQVF 475

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAANRR 454
             +  DA    W S++ +     +   A    +++   G +P +     +LS    +   
Sbjct: 476 TQIS-DADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLV 534

Query: 455 WEEVARARKLIRDSEVKKEKS--KSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
            E     + +++D  ++ E++     V+I G+           +LE  ++ +KKL  KP
Sbjct: 535 QEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAG---------QLENALDFIKKLTMKP 584



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 185/370 (50%), Gaps = 13/370 (3%)

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT--------VSSV 141
           +F++ P+R  VS      S  T+  E+             +TP+ EF         V S 
Sbjct: 62  LFEKTPKRIGVSITESHRSGCTDDPEEGVKE--AGFFTRNETPHVEFGGGFPHRQYVFSA 119

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L  C  +  V   ++ H F +K  +  + FV T+L+D+YAKCG +  A RV++ M   + 
Sbjct: 120 LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDA 179

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
            T + +++ + +N  + +A  +F +   +G   N +T S+++  C  ++A+ +GKQ+HA 
Sbjct: 180 ATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAH 239

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + K  + S     ++L+ +Y+KCG + +A  VF  + ++N++ W   I+GF +H    + 
Sbjct: 240 VVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKA 299

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           +  F  M+++G+ PNE T+  VL++C  +     G+ +   ++K+  +   VF  + +ID
Sbjct: 300 LKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKK-GMASGVFVGTAIID 358

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +    G + EA      M   A+   W +L+A       +E A  A  ++  ++ D A N
Sbjct: 359 MYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRM--VKEDVACN 416

Query: 442 HLLLSNIYAA 451
               SNI+ A
Sbjct: 417 EFTYSNIFKA 426



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 3/178 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T+ + L +C        GK  H   + +G+  D    + L++ Y+KCG IS A+ +F  M
Sbjct: 1077 TISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMM 1136

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            P+R  V+WN++I  Y  +G   EA+ LF N + E  T     T ++VL AC+    V   
Sbjct: 1137 PERNTVTWNSLIFGYANHGYCNEAIELF-NQMEESDTKLDHLTFTAVLNACSHAGMVELG 1195

Query: 155  KQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
            + L      K  ++  +     ++D+  + G +S+A  + ++MP E ++  W +++  
Sbjct: 1196 ESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGA 1253


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/548 (40%), Positives = 334/548 (60%), Gaps = 22/548 (4%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDE------MPQRCIVSWNTIIGSYTTNGREQE 117
           LNN TL    LI  +S CG +  AR+VF++      +P+     W  +   Y+ NG  +E
Sbjct: 105 LNNPTLKGK-LITLFSVCGRVDEARRVFEDGGEDVDLPESV---WVAMGIGYSRNGYPKE 160

Query: 118 AVALFINMLRE-GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           A+ L+  M+ + G+     F  S  L AC+   D+   + +H   LKA  D +  V  AL
Sbjct: 161 ALLLYYEMVCQFGQ--LGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNAL 218

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           L +Y++ G   +A R+F+ MP RN V+W+S++AG V+ E   EA+  FR  Q  G+ ++ 
Sbjct: 219 LRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSW 278

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            T+++++  CA + AL  GK++HAV+ K+    +    +SLVDMYAKCG +     VF+G
Sbjct: 279 VTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNG 338

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           ++ K++  WNT+I+G++ + R  E M  F++M  +G  P+  T+I++LS CSH G+ + G
Sbjct: 339 MQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDG 398

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
              F++M   H + P V HY+C++D+LGRAG I EA +++ NMPF  T S+WGSLL SCR
Sbjct: 399 CRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCR 458

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
            + N+ LAE  AK+LF +EP+NAGN+++LSNIYA    WE V   R+ +    + KE   
Sbjct: 459 LHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGC 518

Query: 477 SWVEIK--------GKRNHPRIAEIYSKL-EKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
           SW++IK        G  N  R +  Y K+ ++L+E M+++GY P+T   LHDV +  +  
Sbjct: 519 SWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAM 578

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
            +  HSE+LA  F L+    G+PIRI KNLR+C DCHS++K  S++ GR  ++RD NRFH
Sbjct: 579 WVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFH 638

Query: 588 HFTNGSCS 595
           HF +G CS
Sbjct: 639 HFKDGVCS 646



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 26/40 (65%)

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
           LA  F L+    G+PIRI KNL +C DCHS++K  S+  G
Sbjct: 700 LATMFALINTASGMPIRITKNLHVCVDCHSWVKIVSKNTG 739


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/583 (37%), Positives = 340/583 (58%), Gaps = 16/583 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+    +++C+       GK  H +    G  +D   S+ LI  YS CG +  ARKVFDE
Sbjct: 77  SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINML-REGKTPYSEFTVS----SVLCACAAK 148
           +P+R IVSW ++I  Y  NG   +AV+LF ++L  E     + F  S    SV+ AC+  
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSS 206
                 + +H F +K   DR V VG  LLD YAK G   ++ A ++F+ + +++ V+++S
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 207 MVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +++ + Q+ +  EA  +FRR  +   + +N  T+S+V+ A +   AL  GK +H  + + 
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   ++   +S++DMY KCG V  A   F  ++ KNV  W  MI+G+  H  + + + LF
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             M  +G+ PN  T++SVL+ACSH G+  +G  +F+ M  +  V P + HY CM+D+LGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGR 436

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           AG + +AYDLI  M     + +W SLLA+CR ++N+ELAEI+  +LF ++  N G ++LL
Sbjct: 437 AGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
           S+IYA   RW++V R R ++++  + K    S +E+ G+          HP+  +IY  L
Sbjct: 497 SHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
            +L  ++ + GY   T    HDV++  K+  L  HSEKLA+ FG+M   PG  + ++KNL
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCH+ +K  S+I  RE +VRD  RFHHF +G CSC D+W
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 15/200 (7%)

Query: 190 SRVFESMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           + +F    ++ +V +W+S++A   ++    EAL+ F   + L L   + +    I AC+ 
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L  +  GKQ H      G+ S++F +S+L+ MY+ CG + DA  VF  I ++N+V W +M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148

Query: 309 ISGFSRHARSVEVMILFEKM------QQAGLHPNEQTYISVLSACSHI---GMVEKGKSY 359
           I G+  +  +++ + LF+ +          +  +    +SV+SACS +   G+ E   S+
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 360 -----FDLMVKQHNVLPNVF 374
                FD  V   N L + +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAY 228


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/583 (37%), Positives = 340/583 (58%), Gaps = 16/583 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+    +++C+       GK  H +    G  +D   S+ LI  YS CG +  ARKVFDE
Sbjct: 77  SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINML-REGKTPYSEFTVS----SVLCACAAK 148
           +P+R IVSW ++I  Y  NG   +AV+LF ++L  E     + F  S    SV+ AC+  
Sbjct: 137 IPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSS 206
                 + +H F +K   DR V VG  LLD YAK G   ++ A ++F+ + +++ V+++S
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 207 MVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +++ + Q+ +  EA  +FRR  +   + +N  T+S+V+ A +   AL  GK +H  + + 
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   ++   +S++DMY KCG V  A   F  ++ KNV  W  MI+G+  H  + + + LF
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             M  +G+ PN  T++SVL+ACSH G+  +G  +F+ M  +  V P + HY CM+D+LGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGR 436

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           AG + +AYDLI  M     + +W SLLA+CR ++N+ELAEI+  +LF ++  N G ++LL
Sbjct: 437 AGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
           S+IYA   RW++V R R ++++  + K    S +E+ G+          HP+  +IY  L
Sbjct: 497 SHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
            +L  ++ + GY   T    HDV++  K+  L  HSEKLA+ FG+M   PG  + ++KNL
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCH+ +K  S+I  RE +VRD  RFHHF +G CSC D+W
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 15/200 (7%)

Query: 190 SRVFESMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           + +F    ++ +V +W+S++A   ++    EAL+ F   + L L   + +    I AC+ 
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L  +  GKQ H      G+ S++F +S+L+ MY+ CG + DA  VF  I ++++V W +M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSM 148

Query: 309 ISGFSRHARSVEVMILFEKM------QQAGLHPNEQTYISVLSACSHI---GMVEKGKSY 359
           I G+  +  +++ + LF+ +          +  +    +SV+SACS +   G+ E   S+
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 360 -----FDLMVKQHNVLPNVF 374
                FD  V   N L + +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAY 228


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 343/578 (59%), Gaps = 16/578 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
           TL   L  C  E   ++ K  H   +  G + +D L +N  +  Y+KCG +  A  VF  
Sbjct: 402 TLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCG 461

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + + SWN +IG +  NG  ++A+ L++ M   G  P   FT++S+L ACA  + +  
Sbjct: 462 MESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEP-DLFTIASLLSACARLKSLSC 520

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K++H   L+   + + F+  +L+ +Y +CG I  A   F++M E+N V W++M+ GF Q
Sbjct: 521 GKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQ 580

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           NE   +AL +F +     +  ++ +I   + AC+ ++AL  GK++H    K+    + F 
Sbjct: 581 NEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFV 640

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             SL+DMYAKCGC+  +  +F  +  K  V WN +I+G+  H    + + LF+ MQ AG 
Sbjct: 641 TCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGF 700

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+I++L+AC+H G+V +G  Y   M     + P + HY+C++D+LGRAG ++EA 
Sbjct: 701 RPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEAL 760

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           +L+  +P    + +W SLL+SCRNYR+L++ E  A +L  + PD A N++L+SN YA   
Sbjct: 761 ELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLG 820

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNH-----------PRIAEIYSKLEKLVE 502
           +W+EV + R+ +++  ++K+   SW+EI GK +             +I + + +LEK   
Sbjct: 821 KWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEK--- 877

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           ++ K+GYKP+T   LH++E+  K ++L +HSEKLA++FGL+    G  +R+ KNLRIC D
Sbjct: 878 KINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVD 937

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+ +K  S+I  RE IVRD  RFHHF NG CSC D+W
Sbjct: 938 CHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 168/337 (49%), Gaps = 5/337 (1%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKI-IGMGLNNDTLTSNI 73
           +F  S +    +++N+     +   LQ C   +    G+  H  I       ND +    
Sbjct: 75  NFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITR 134

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L+  YS C     +  VF+   ++ +  WN ++  Y  N   ++AV +F+ M+   +   
Sbjct: 135 LVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVP 194

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
             FT+  V+ AC    DV   + +H FALK  +  +VFVG AL+ +Y K G +  A +VF
Sbjct: 195 DNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVF 254

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRA--QVLGLEYNQFTISSVICACAGLAA 251
           + MP+RN V+W+S++   ++N ++EE+  LF+       GL  +  T+ +VI  CA    
Sbjct: 255 DKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGE 314

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           +  G   H +  K G    +   SSL+DMY+KCG + +A  +F    EKNV+ WN+MI G
Sbjct: 315 VRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGG 373

Query: 312 FSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSAC 347
           +S+         L  KMQ +  +  NE T ++VL  C
Sbjct: 374 YSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 327/587 (55%), Gaps = 64/587 (10%)

Query: 48  APVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKVFDEMPQRCIVSWNT 104
           +P   K  HA ++     N  L+S  L    S C      S A+ +F  +    +  WNT
Sbjct: 27  SPFELKQLHAHLLK---TNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNT 83

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
            + S+       +A++LF   LRE       +T S VL AC+   DV   K +H +  K 
Sbjct: 84  CLRSFAEGDSPADAISLFYR-LREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKL 142

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW-------------------- 204
            +  N+F+   ++ +YA CG I  A +VF+ MP+R+ +TW                    
Sbjct: 143 GLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLF 202

Query: 205 -----------SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
                      +SM+ G+ Q    +EA+ LF   +  GL  N+ T+ +V+ ACA +  L+
Sbjct: 203 AEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLV 262

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G+++H    ++G+  N+   ++L+DMY KCGC+ DA  +F  +EE+ VV W+ MI+G +
Sbjct: 263 LGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLA 322

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H R+ + + LF KM   G+ PN  T+I +L ACSH+GMVEKG+ YF  M + + ++P +
Sbjct: 323 AHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRI 382

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY CM+D+  RAGL+ EA++ I+NMP      +WG+LL  C+ ++N++LAE A + L  
Sbjct: 383 EHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSK 442

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEI 493
           ++P N G +++LSNIYA   RWE+VAR RKL+RD         +W               
Sbjct: 443 LDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRD-------RGTW--------------- 480

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
               EKL++ MK  GY P T   L D+E+ +K++ L  HSEKLA+ FGL+   PG  IRI
Sbjct: 481 ----EKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRI 536

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           MKNLR+C DCH+ +K  S ++ RE +VRD NRFH F NGSCSC D+W
Sbjct: 537 MKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 165/314 (52%), Gaps = 34/314 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+R      GK+ H  +  +GL ++    N++++ Y+ CG I  ARKVFD+M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174

Query: 95  PQRCIVSWN-------------------------------TIIGSYTTNGREQEAVALFI 123
           PQR +++WN                               ++IG Y   G+ +EA+ LF+
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M   G  P +E TV +VL ACA   ++   +++H F+ ++  ++N+ V   L+D+Y KC
Sbjct: 235 EMEDAGLLP-NEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC 293

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA R+F++M ER  V+WS+M+AG   +   E+AL LF +    G++ N  T   ++
Sbjct: 294 GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353

Query: 244 CACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKN 301
            AC+ +  + +G++  A + +  G    +     +VD++++ G + +A+ F+ +     N
Sbjct: 354 HACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPN 413

Query: 302 VVLWNTMISGFSRH 315
            V+W  ++ G   H
Sbjct: 414 GVVWGALLGGCKVH 427


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 345/560 (61%), Gaps = 14/560 (2%)

Query: 52  GKVCHAK--IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           G+  H +  ++G+G++N     + L++ Y+K G +  AR V D++  + +V +  +I  Y
Sbjct: 195 GQRAHGQSVVLGVGVSN-VFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGY 253

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           + +G + E++ +F NM ++G    +E+T+SSVL  C    D+   + +H   +KA ++  
Sbjct: 254 SHHGEDGESLQVFRNMTKKG-IEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESA 312

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           V   T+LL +Y +CGL+ D+ +VF+     N+VTW+S++ G VQN   E AL+ FR+   
Sbjct: 313 VASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLR 372

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             +  N FT+SSV+ AC+ LA L QGKQ+HA++ K G   + +  ++L+D Y KCG    
Sbjct: 373 SSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEI 432

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF+G+ E +VV  N+MI  ++++    E + LF  M+  GL PN  T++ VLSAC++
Sbjct: 433 ARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNN 492

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G++E+G   F       N+     HY+CM+D+LGRAG + EA ++++N    +   +W 
Sbjct: 493 AGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEA-EMLINQVNISDVVIWR 551

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL++CR + ++E+A+    ++  + P++ G H+LLSN+YA+   W +V   +  +R+  
Sbjct: 552 TLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMR 611

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           +KK  + SWV+++        G  +HP   +I  KLE+L+E++K+LGY P+T   L D++
Sbjct: 612 LKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLD 671

Query: 522 DSRKQELLIHHSEKLALTFGL-MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           + +K   L +HSEKLA+ F L         IRI+KNLR+CGDCH++MKF S+I GR+ I 
Sbjct: 672 EEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIA 731

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD+ RFHHF NG CSC D+W
Sbjct: 732 RDVKRFHHFRNGLCSCGDYW 751



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 208/371 (56%), Gaps = 8/371 (2%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N LI+ Y KCG +  ARKVFDE+P R IV+WN++I SY  NGR +EA+ ++  M+ +G  
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL 173

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDAS 190
           P  EFT SSV  A +    V E ++ H  ++   +   NVFVG+AL+D+YAK G + DA 
Sbjct: 174 P-DEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDAR 232

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
            V + +  ++ V +++++ G+  +    E+L +FR     G+E N++T+SSV+  C  L 
Sbjct: 233 LVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLE 292

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
            L  G+ +H ++ K G  S + + +SL+ MY +CG V D+  VF      N V W ++I 
Sbjct: 293 DLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIV 352

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           G  ++ R    ++ F +M ++ + PN  T  SVL ACS + M+E+GK    +++K   + 
Sbjct: 353 GLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMK-FGLD 411

Query: 371 PNVFHYSCMIDILGRAG---LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            + +  + +ID  G+ G   +    ++ +L +   +  SM  S   +   +  L+L   +
Sbjct: 412 IDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQL--FS 469

Query: 428 AKQLFGMEPDN 438
             +  G+EP+N
Sbjct: 470 GMKDTGLEPNN 480



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 143/285 (50%), Gaps = 6/285 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L  C        G++ H  I+  GL +   +   L+  Y +CGL+  + KVF + 
Sbjct: 280 TLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQF 339

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                V+W ++I     NGRE+ A+  F  MLR   TP S FT+SSVL AC++   + + 
Sbjct: 340 INPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNS-FTLSSVLRACSSLAMLEQG 398

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   +K  +D + +VG AL+D Y KCG    A  VF  + E + V+ +SM+  + QN
Sbjct: 399 KQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQN 458

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG---FGSNM 271
               EAL LF   +  GLE N  T   V+ AC     L +G  + +    +G      + 
Sbjct: 459 GFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDH 518

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           +A   +VD+  + G + +A  + + +   +VV+W T++S    H 
Sbjct: 519 YAC--MVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHG 561



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 152/295 (51%), Gaps = 5/295 (1%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           SS++  C   + + +  ++   ALK     ++  G  L+D Y KCG +  A +VF+ +P 
Sbjct: 81  SSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKVFDEVPH 138

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           R+ V W+SM+A +++N   +EA+ +++R    G+  ++FT SSV  A + L  + +G++ 
Sbjct: 139 RHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRA 198

Query: 259 HAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           H      G G SN+F  S+LVDMYAK G + DA  V   +  K+VVL+  +I G+S H  
Sbjct: 199 HGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGE 258

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             E + +F  M + G+  NE T  SVL  C ++  +  G+    L+VK   +   V   +
Sbjct: 259 DGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKA-GLESAVASQT 317

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
            ++ +  R GL+ ++   +     +     W S++         E+A +  +Q+ 
Sbjct: 318 SLLTMYYRCGLVDDSLK-VFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQML 371


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/575 (37%), Positives = 335/575 (58%), Gaps = 9/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ A L   A  +    G       + +G ++       L   YSKCG I  AR +F +
Sbjct: 208 TTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQ 267

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + Q  +VS+N +I  YT N   + +V LF  +L  G+   S  ++  ++        +  
Sbjct: 268 IGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSS-SIVGLIPVFFPFGHLHL 326

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H F  K+ +  N  V TAL  VY++   I  A  +F+   E++  +W++M++G+ Q
Sbjct: 327 TRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQ 386

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L E+A+ LF+  Q   +  N  T++S++ ACA L AL  GK VH ++ +  F SN+F 
Sbjct: 387 NGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFV 446

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           +++L+DMYAKCG + +A  +FS + EKN V WN MISG+  H    E + LF +M  + +
Sbjct: 447 STALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRV 506

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P   T++SVL ACSH G+V +G   F  MV  H   P   HY+CM+D+LGRAG + +A 
Sbjct: 507 SPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKAL 566

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           D I  MP +    +WG+LL +C  +++  LA +A+ +LF ++P N G ++LLSNIY+A +
Sbjct: 567 DFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQ 626

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMK 505
            + E A  R +++  ++ K    + +E+         G ++HP+   IY+ LEKL  +M+
Sbjct: 627 NYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMR 686

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + G++ ET   LHDVE+  K+ ++  HSEKLA+ FGL+   PG  IRI+KNLR+C DCH+
Sbjct: 687 EAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHN 746

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S+I  R  +VRD NRFHHF +G CSC D+W
Sbjct: 747 ATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 183/351 (52%), Gaps = 3/351 (0%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G  +D    + ++  Y K   ++ ARKVFD M +R  V WNT++     N    EA+ +F
Sbjct: 136 GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIF 195

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
            +M++ G   +   TV++VL   A  +D+     +   A+K     + +V T L  +Y+K
Sbjct: 196 GDMVK-GGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSK 254

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG I  A  +F  + + + V++++M++G+  N   E ++ LF+   V G + N  +I  +
Sbjct: 255 CGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGL 314

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           I        L   + +H    K+G  SN   +++L  +Y++   +  A  +F    EK++
Sbjct: 315 IPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSL 374

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
             WN MISG++++  + + + LF++MQ+  + PN  T  S+LSAC+ +G +  GK   DL
Sbjct: 375 ASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDL 434

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            + + +   N+F  + +ID+  + G I EA  L   MP +  A  W ++++
Sbjct: 435 -INRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMIS 483



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 150/289 (51%), Gaps = 3/289 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+II  GL+ND +T   L +  S    I  A  +F  +P   +  +N +I +++ N   
Sbjct: 30  HAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSP 89

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             AV+L+ ++ +        FT + V+   ++           +    A    ++FVG+A
Sbjct: 90  SSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIV---AGFGSDLFVGSA 146

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           ++  Y K   ++ A +VF+ M ER+ V W++MV+G V+N  ++EA+++F      G+ ++
Sbjct: 147 IVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFD 206

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+++V+   A L  L  G  +  +  K GF S+ +  + L  +Y+KCG +  A  +F 
Sbjct: 207 STTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFG 266

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
            I + ++V +N MISG++ +  +   + LF+++  +G   N  + + ++
Sbjct: 267 QIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           +  Q H   +   +  ++   T L    +    I  AS +F ++P  +   ++ ++  F 
Sbjct: 25  QLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFS 84

Query: 213 QNELYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            N     A+ L+    +   LE + FT + VI   + L   +       V    GFGS++
Sbjct: 85  LNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIV---AGFGSDL 141

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F  S++V  Y K   V  A  VF G+ E++ VLWNTM+SG  +++   E +++F  M + 
Sbjct: 142 FVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKG 201

Query: 332 GLHPNEQTYISVLSACSHI 350
           G+  +  T  +VL   + +
Sbjct: 202 GIGFDSTTVAAVLPGVAEL 220


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/582 (36%), Positives = 345/582 (59%), Gaps = 10/582 (1%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           N    +L T+ + LQ+C        GK  H  +I  G   DT  SNILIN Y+KCG +  
Sbjct: 369 NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 428

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           +++VF  M  +  VSWN++I  Y  NG   EA+ LF  M++    P S  T   +L    
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDS-VTYVMLLSMST 486

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
              D+   K+LH    K   + N+ V   L+D+YAKCG + D+ +VFE+M  R+ +TW++
Sbjct: 487 QLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNT 546

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           ++A  V +E     L +  R +  G+  +  T+ S++  C+ LAA  QGK++H  + K G
Sbjct: 547 IIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLG 606

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             S++   + L++MY+KCG + +++ VF  ++ K+VV W  +IS    +    + +  F 
Sbjct: 607 LESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFG 666

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M+ AG+ P+   +++++ ACSH G+VE+G +YF  M K + + P + HY+C++D+L R+
Sbjct: 667 EMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRS 726

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
            L+ +A D IL+MP    +S+WG+LL++CR   + E+A+  ++++  + PD+ G ++L+S
Sbjct: 727 ALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVS 786

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLE 498
           N+YAA  +W++V   RK I+   +KK+   SW+EI+        G +   +  E+   L 
Sbjct: 787 NVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLG 846

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
            L   M K GY    +  LHD+++  K+++L  HSE+LA+ FGL+   PG P+++MKNLR
Sbjct: 847 MLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLR 906

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +C DCH+  K+ S+I  RE +VRD NRFH F +G+CSC D+W
Sbjct: 907 VCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 230/429 (53%), Gaps = 11/429 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + + +CA        K  H +++ MG  +D    N LI+ Y +   +  ARKVF+EM
Sbjct: 176 TFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM 235

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN++I  Y  NG   EA+ ++      G  P S +T+SSVL AC     V E 
Sbjct: 236 PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDS-YTMSSVLRACGGLGSVEEG 294

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H    K  + ++V V   LL +Y K   + D  R+F+ M  R+ V+W++M+ G+ Q 
Sbjct: 295 DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQV 354

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            LYEE++ LF    V   + +  TI+S++ AC  L  L  GK VH  +  +G+  +  A+
Sbjct: 355 GLYEESIKLFME-MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 413

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + L++MYAKCG ++ +  VFSG++ K+ V WN+MI+ + ++    E M LF KM +  + 
Sbjct: 414 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVK 472

Query: 335 PNEQTYISVLSACSHIGMVEKGKS-YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
           P+  TY+ +LS  + +G +  GK  + DL     N   N+   + ++D+  + G + ++ 
Sbjct: 473 PDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFN--SNIVVSNTLVDMYAKCGEMGDSL 530

Query: 394 DLILNMPFDATASMWGSLLASCRNYR--NLELAEIAAKQLFGMEPDNAG--NHLLLSNIY 449
            +  NM      + W +++ASC +    NL L  I+  +  G+ PD A   + L + ++ 
Sbjct: 531 KVFENMKARDIIT-WNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 589

Query: 450 AANRRWEEV 458
           AA R+ +E+
Sbjct: 590 AAKRQGKEI 598



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 167/310 (53%), Gaps = 3/310 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-EMPQRCIVSWNTIIGSYTTNGR 114
           H+ II +GL++  + S  LI  Y+     + +  VF    P   +  WN+II + T NG 
Sbjct: 95  HSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGL 154

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
             EA++L+    R    P   +T  SV+ ACA   D    K +H   L      ++++G 
Sbjct: 155 FSEALSLYSETQRIRLQP-DTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGN 213

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           AL+D+Y +   +  A +VFE MP R+ V+W+S+++G+  N  + EAL ++ R + LG+  
Sbjct: 214 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVP 273

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           + +T+SSV+ AC GL ++ +G  +H ++ K G   ++   + L+ MY K   ++D   +F
Sbjct: 274 DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIF 333

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             +  ++ V WNTMI G+S+     E + LF +M      P+  T  S+L AC H+G +E
Sbjct: 334 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLE 392

Query: 355 KGKSYFDLMV 364
            GK   D M+
Sbjct: 393 FGKYVHDYMI 402


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 342/609 (56%), Gaps = 44/609 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T  +  +SCA+ +A    K  HA  + + L+        LI+ YS+ G            
Sbjct: 129 TFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKS 188

Query: 83  ----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                     LI+G         AR++FDE+P + +VSWN +I  Y  +GR +EA+A F 
Sbjct: 189 TLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFT 248

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M     +P ++ T+ SVL AC   R +   K +  +       +N+ +  AL+D+Y+KC
Sbjct: 249 RMQEADVSP-NQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKC 307

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G I  A ++F+ M +++ + W++M+ G+    LYEEAL+LF       +  N  T  +V+
Sbjct: 308 GEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVL 367

Query: 244 CACAGLAALIQGKQVHAVLCK----TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            ACA L AL  GK VHA + K    TG  +N+   +S++ MYAKCGCV  A  VF  +  
Sbjct: 368 PACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGS 427

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           +++  WN MISG + +  +   + LFE+M   G  P++ T++ VLSAC+  G VE G  Y
Sbjct: 428 RSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRY 487

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F  M K + + P + HY CMID+L R+G   EA  L+ NM  +   ++WGSLL +CR + 
Sbjct: 488 FSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHG 547

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
            +E  E  A++LF +EP+N+G ++LLSNIYA   RW++VA+ R  + D  +KK    + +
Sbjct: 548 QVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSI 607

Query: 480 EIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           EI         G + HP+   I+  L+++   +++ G+ P+T   L+D+++  K+  L  
Sbjct: 608 EIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQ 667

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+ FGL+   PG  IRI+KNLR+C +CHS  K  S+I  RE I RD NRFHHF +
Sbjct: 668 HSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKD 727

Query: 592 GSCSCWDFW 600
           G CSC D W
Sbjct: 728 GFCSCNDRW 736



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/426 (30%), Positives = 220/426 (51%), Gaps = 42/426 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRC--IVSWNTIIGS 108
           K  H+ II  GL+N     + LI F   S    +S A  +F  +  +   I  WNT+I +
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           ++       ++ LF  ML  G  P S  T  S+  +CA  +   E KQLH  ALK A+  
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSH-TFPSLFKSCAKSKATHEAKQLHAHALKLALHL 160

Query: 169 NVFVGTALLDVYAKC-------------------------------GLISDASRVFESMP 197
           +  V T+L+ +Y++                                G + DA R+F+ +P
Sbjct: 161 HPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIP 220

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
            ++ V+W++M+AG+VQ+  +EEAL  F R Q   +  NQ T+ SV+ AC  L +L  GK 
Sbjct: 221 AKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKW 280

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           + + +   GFG N+   ++LVDMY+KCG +  A  +F G+E+K+V+LWNTMI G+   + 
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSL 340

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVF 374
             E ++LFE M +  + PN+ T+++VL AC+ +G ++ GK   +Y D  +K    + NV 
Sbjct: 341 YEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVS 400

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF-- 432
            ++ +I +  + G +  A  +  +M   + AS W ++++      + E A    +++   
Sbjct: 401 LWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS-WNAMISGLAMNGHAERALGLFEEMINE 459

Query: 433 GMEPDN 438
           G +PD+
Sbjct: 460 GFQPDD 465



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 146/290 (50%), Gaps = 7/290 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST+ + L +C   R+   GK   + +   G   +    N L++ YSKCG I  ARK+FD 
Sbjct: 260 STMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDG 319

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + ++ WNT+IG Y      +EA+ LF  MLRE  TP ++ T  +VL ACA+   +  
Sbjct: 320 MEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTP-NDVTFLAVLPACASLGALDL 378

Query: 154 CKQLHVFA---LKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            K +H +    LK   +  NV + T+++ +YAKCG +  A +VF SM  R+  +W++M++
Sbjct: 379 GKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMIS 438

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFG 268
           G   N   E AL LF      G + +  T   V+ AC     +  G +  + + K  G  
Sbjct: 439 GLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGIS 498

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHAR 317
             +     ++D+ A+ G   +A  +   +E E +  +W ++++    H +
Sbjct: 499 PKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQ 548



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 145/344 (42%), Gaps = 46/344 (13%)

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F++ L     PY        L   A   D+   KQ+H   +K+ +   +F  + L++   
Sbjct: 9   FVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEF-- 66

Query: 182 KCGL-----ISDASRVFESMPER--NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
            C L     +S A  +F S+  +  N   W++++           +L LF +    GL  
Sbjct: 67  -CALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYP 125

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC---------- 284
           N  T  S+  +CA   A  + KQ+HA   K     +    +SL+ MY++           
Sbjct: 126 NSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVF 185

Query: 285 ---------------------GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
                                G V DA  +F  I  K+VV WN MI+G+ +  R  E + 
Sbjct: 186 DKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALA 245

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
            F +MQ+A + PN+ T +SVLSAC H+  +E GK +    V+      N+   + ++D+ 
Sbjct: 246 CFTRMQEADVSPNQSTMVSVLSACGHLRSLELGK-WIGSWVRDRGFGKNLQLVNALVDMY 304

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            + G I  A  L   M  D    +W +++     Y +L L E A
Sbjct: 305 SKCGEIGTARKLFDGME-DKDVILWNTMIG---GYCHLSLYEEA 344


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 40/600 (6%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C ++RA   GK  HA I   G +     SN L++ Y+KCG +  A KVFDEM  R +
Sbjct: 126 LKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDL 184

Query: 100 VSWNTIIGSYTTNG-------------------------------REQEAVALFINMLRE 128
            SWN +I  Y   G                               R +EA+ L+  M + 
Sbjct: 185 CSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKH 244

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
             +  ++ T+SS L A AA   +   K++H   ++  +D +  V  +LLD+Y KCG I +
Sbjct: 245 DYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEE 304

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  +F+ M ER+ V+W++M+  +++N   EE   LFR      +  N FT + V+ ACA 
Sbjct: 305 ARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACAD 364

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LAA   GKQ+HA + + GF S   AAS+LV MY+KCG + +A  VF  + + ++  W ++
Sbjct: 365 LAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSL 424

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           + G+++H +  + +  FE + ++G  P+   +I VLSAC+H G+V+KG  YF  + ++H 
Sbjct: 425 LVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHG 484

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           +   + HY+C+ID+L RAG   EA  +I  MP      +W +LL  CR + NLELA+ AA
Sbjct: 485 LTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAA 544

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------ 482
           K LF +EP+N   ++ L+NIYA+     E A  R+ +    + K+   SW+EI+      
Sbjct: 545 KSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVF 604

Query: 483 --GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
             G  +HP+  EI   L +L + MK++GY P+T   LHDVE  +K+E L +HSEKLA+ F
Sbjct: 605 SVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAF 664

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G++    G PI++ KNLR C DCH+ +KF S I GR+ IVRD NRFH F  GSCSC D+W
Sbjct: 665 GIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 339/575 (58%), Gaps = 10/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + L +CA       G+V H   +  G  + T  +N+L++ YS C       K+F  
Sbjct: 298 ATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRN 357

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M Q+ +VSW  +I SYT  G   +   LF  M  EG  P   F ++S L A A    +  
Sbjct: 358 MVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRP-DIFAITSALHAFAGNELLKH 416

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H +A++  M++ + V  AL+++Y KCG + +A  +F+ +  ++ ++W++++ G+ +
Sbjct: 417 GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSR 476

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L  EA  LF    +L L  N  T++ ++ A A L++L +G+++HA   + G+  + F 
Sbjct: 477 NNLANEAFSLFTE-MLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFV 535

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           A++L+DMY KCG ++ A  +F  +  KN++ W  M++G+  H R  + + LFE+M+ +G+
Sbjct: 536 ANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGI 595

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  ++ ++L ACSH G+ ++G  +FD M K+H + P + HY+CM+D+L   G + EAY
Sbjct: 596 APDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAY 655

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           + I +MP +  +S+W SLL  CR +RN++LAE  A+++F +EP+N G ++LL+NIYA   
Sbjct: 656 EFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAE 715

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RWE V + +  I    +++    SW+E KGK        RNHP+   I   L ++ + M+
Sbjct: 716 RWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQ 775

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + G+ P+ ++ L   +++   E L  HS KLA+ FG++ L  G  IR+ KN R+C  CH 
Sbjct: 776 EEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHE 835

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S++  RE I+RD NRFHHF  G CSC  +W
Sbjct: 836 AAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 179/338 (52%), Gaps = 3/338 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+V H  +  +G  +     N L+ FY+K      A  VFD MP R ++SWN++I   T+
Sbjct: 215 GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTS 274

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG   +A+ LF+ M  EG+   S  T+ SVL ACA    +F  + +H +++K        
Sbjct: 275 NGLYDKAIELFVRMWLEGEELDSA-TLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTS 333

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +   LLD+Y+ C      +++F +M ++N V+W++M+  + +  LY++   LF+   + G
Sbjct: 334 LANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG 393

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              + F I+S + A AG   L  GK VH    + G    +   ++L++MY KCG + +A 
Sbjct: 394 TRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAK 453

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F G+  K+++ WNT+I G+SR+  + E   LF +M    L PN  T   +L A + + 
Sbjct: 454 LIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLS 512

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            +E+G+      +++   L + F  + +ID+  + G +
Sbjct: 513 SLERGREMHAYALRR-GYLEDDFVANALIDMYVKCGAL 549



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 204/433 (47%), Gaps = 14/433 (3%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI---LINFYSKCGLISGARKVFDEM 94
           A LQ C+  R+   GK  H  +    L  D + + +   L+  Y KCG +  AR+VFDEM
Sbjct: 96  AVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEM 155

Query: 95  PQRCIVS-WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           PQ   V  W  ++  Y   G  +E V LF  M   G  P   +T+S VL   A    + +
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRP-DAYTISCVLKCIAGLGSIED 214

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H    K        VG AL+  YAK     DA  VF+ MP R+ ++W+SM++G   
Sbjct: 215 GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTS 274

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N LY++A+ LF R  + G E +  T+ SV+ ACA L  L  G+ VH    KTGF S    
Sbjct: 275 NGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSL 334

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           A+ L+DMY+ C        +F  + +KNVV W  MI+ ++R     +V  LF++M   G 
Sbjct: 335 ANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGT 394

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEA 392
            P+     S L A +   +++ GKS     ++  N +  V   +  ++++  + G + EA
Sbjct: 395 RPDIFAITSALHAFAGNELLKHGKSVHGYAIR--NGMEKVLAVTNALMEMYVKCGNMEEA 452

Query: 393 YDLILNMPFDATASMWGSLLAS-CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
             LI +         W +L+    RN    E   +  + L  + P    N + ++ I  A
Sbjct: 453 -KLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRP----NAVTMTCILPA 507

Query: 452 NRRWEEVARARKL 464
                 + R R++
Sbjct: 508 AASLSSLERGREM 520


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 337/587 (57%), Gaps = 23/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL A L +C+       G   H   I     + T   N L   Y+K G +  A + F  +
Sbjct: 181 TLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMV 240

Query: 95  PQRCIVSWNTIIGSYTTNGREQE-AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P + +++W T+I +   +    E  + LF++ML +G  P +EFT++SV+  C  + D+  
Sbjct: 241 PDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLP-NEFTLTSVMSLCGTRLDLNL 299

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+  F  K     N+ V  + + +Y + G   +A R FE M + + +TW++M++G+ Q
Sbjct: 300 GKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQ 359

Query: 214 ------NELYE-----EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
                 ++L+      +AL +FR  +   ++ + FT SS++  C+ + AL QG+Q+HA  
Sbjct: 360 IMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQT 419

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            KTGF S++   S+LV+MY KCGC+ DA   F  +  + +V W +MISG+S+H R  E +
Sbjct: 420 IKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAI 479

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE M+ AG+ PNE T++ VLSACS+ G+ EK + YFD+M +++ + P V HY CM+D+
Sbjct: 480 QLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDM 539

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
             R G + +A+  I    F+   ++W SL+A CR++ N+ELA  AA +L  + P     +
Sbjct: 540 FVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETY 599

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIY 494
           +LL N+Y +N RW +VAR RKL++   +     +SW+ IK K        + H    E+Y
Sbjct: 600 VLLLNMYISNERWHDVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELY 659

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL--LIHHSEKLALTFGLMCLCPGVPIR 552
             LE L+E+ K +GY+P    +L D ED +K     + HHSE+LA+  GL+   PG  +R
Sbjct: 660 QLLENLLEKAKTIGYEPYQSAELSDSEDDKKPPAGSVRHHSERLAVALGLLQTPPGATVR 719

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           + KN+ +C DCHS +KF S +A RE +VRD  R H F +G CSC DF
Sbjct: 720 VTKNITMCRDCHSSIKFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 202/386 (52%), Gaps = 15/386 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C    +    +  H  ++  G + D   +  L+N Y +CG    AR +FD+MP++ +
Sbjct: 85  LHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNV 144

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W  +I  YT N +  EA+ +F+ ML  G+ P S +T+ ++L AC+A  +     Q+H 
Sbjct: 145 VTWTALITGYTVNSQLLEALEVFVEMLEAGRYP-SHYTLGAMLNACSASNNADLGSQVHG 203

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           + +K        +G +L  +YAK G +  A R F  +P++N +TW++M++   ++E Y E
Sbjct: 204 YTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTE 263

Query: 220 -ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
             L LF    + G+  N+FT++SV+  C     L  GKQV A   K G  +N+   +S +
Sbjct: 264 LGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTM 323

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR---------HARS--VEVMILFEK 327
            +Y + G   +A   F  +++ +++ WN MISG+++         HARS   + + +F  
Sbjct: 324 YLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRN 383

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           ++++ + P+  T+ S+LS CS +  +E+G+      +K    L +V   S ++++  + G
Sbjct: 384 LKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKT-GFLSDVVVNSALVNMYNKCG 442

Query: 388 LIHEAYDLILNMPFDATASMWGSLLA 413
            I +A    + M    T   W S+++
Sbjct: 443 CIEDATKAFVEMSI-RTLVTWTSMIS 467



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 8/254 (3%)

Query: 101 SWNTIIGSYTTNGREQEA------VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           +WN        NG   EA      V   + MLREGKT  S   V  +L  C     +   
Sbjct: 39  NWNGRSIQAAQNGSTMEAPLRPLDVGEAMAMLREGKTVQSAMYVP-LLHVCVETGSLGGA 97

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + LH   +K     ++FV T+L++ Y +CG   DA  +F+ MPE+N VTW++++ G+  N
Sbjct: 98  RALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVN 157

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL +F      G   + +T+ +++ AC+       G QVH    K    S     
Sbjct: 158 SQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIG 217

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV-MILFEKMQQAGL 333
           +SL  MYAK G +  A   F  + +KNV+ W TMIS  +      E+ + LF  M   G+
Sbjct: 218 NSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGV 277

Query: 334 HPNEQTYISVLSAC 347
            PNE T  SV+S C
Sbjct: 278 LPNEFTLTSVMSLC 291



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 11/190 (5%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           +A   +L T  + L  C+   A  +G+  HA+ I  G  +D + ++ L+N Y+KCG I  
Sbjct: 387 SAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIED 446

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC- 145
           A K F EM  R +V+W ++I  Y+ +GR QEA+ LF +M   G  P +E T   VL AC 
Sbjct: 447 ATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRP-NEITFVCVLSACS 505

Query: 146 ----AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA-SRVFESMPERN 200
               A K + +       + ++  +D        ++D++ + G + DA + +  +  E N
Sbjct: 506 YAGLAEKAEHYFDMMKEEYKIEPIVDHY----GCMVDMFVRLGRLDDAFAFIRRTGFEPN 561

Query: 201 EVTWSSMVAG 210
           E  WSS+VAG
Sbjct: 562 EAIWSSLVAG 571



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 5/195 (2%)

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C    +L   + +H  + KTG  ++MF A+SLV+ Y +CG   DA  +F  + EKNVV W
Sbjct: 88  CVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTW 147

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             +I+G++ +++ +E + +F +M +AG +P+  T  ++L+ACS     + G       +K
Sbjct: 148 TALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIK 207

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC---RNYRNLE 422
            +  L      + +  +  ++G +  A      +P D     W +++++C    NY  L 
Sbjct: 208 -YRALSITSIGNSLCRMYAKSGSLESAMRAFRMVP-DKNVITWTTMISACAEDENYTELG 265

Query: 423 LAEIAAKQLFGMEPD 437
           L       + G+ P+
Sbjct: 266 LTLFLDMLMDGVLPN 280


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 335/575 (58%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L++C +      G   H+ ++ +G+ ND      L++ YS  G    A  VFD M
Sbjct: 248 TMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSM 307

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++SWN +I  Y  NG   E+ ALF  +++ G + +   T+ S++  C+   D+   
Sbjct: 308 CSRSLISWNAMISGYVQNGMIPESYALFRRLVQSG-SGFDSGTLVSLIRGCSQTSDLENG 366

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + LH   ++  ++ ++ + TA++D+Y+KCG I  A+ VF  M ++N +TW++M+ G  QN
Sbjct: 367 RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQN 426

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              E+AL LF + Q   +  N  T+ S++  CA L +L +G+ VHA   + G+  +    
Sbjct: 427 GYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT 486

Query: 275 SSLVDMYAKCGCVVDAYFVFSG-IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           S+L+DMYAKCG +  A  +F+     K+V+L N+MI G+  H      + ++ +M +  L
Sbjct: 487 SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERL 546

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN+ T++S+L+ACSH G+VE+GK+ F  M + H+V P   HY+C++D+  RAG + EA 
Sbjct: 547 KPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEAD 606

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           +L+  MPF  +  +  +LL+ CR ++N  +    A +L  ++  N+G +++LSNIYA  R
Sbjct: 607 ELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEAR 666

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           +WE V   R L+R   +KK    S +E+  K         +HP  A+IY  LE L  E++
Sbjct: 667 KWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVE 726

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             GY P+T   L DV +  K +LL  HSE+LA+ FGL+    G  I+I KNLR+C DCH+
Sbjct: 727 AEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHN 786

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K+ S+I  RE IVRD NRFHHF NG CSC DFW
Sbjct: 787 VTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 176/346 (50%), Gaps = 14/346 (4%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE--MPQRCIVSWNTIIGSYT 110
           K  HA+II   ++ ++  +  LI  YS  G +  AR VFD+  +P+  +   N +I  + 
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVC--NAMIAGFL 121

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N +  E   LF  M+       + +T    L AC    D     ++   A++     ++
Sbjct: 122 RNQQHMEVPRLF-RMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHL 180

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           +VG+++++   K G ++DA +VF+ MPE++ V W+S++ G+VQ  L+ E++ +F      
Sbjct: 181 YVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGG 240

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  +  T+++++ AC        G   H+ +   G G+++F  +SLVDMY+  G    A
Sbjct: 241 GLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSA 300

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +  ++++ WN MISG+ ++    E   LF ++ Q+G   +  T +S++  CS  
Sbjct: 301 ALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQT 360

Query: 351 GMVEKGKSYFDLMVKQ----HNVLPNVFHYSCMIDILGRAGLIHEA 392
             +E G+     ++++    H VL      + ++D+  + G I +A
Sbjct: 361 SDLENGRILHSCIIRKELESHLVLS-----TAIVDMYSKCGAIKQA 401



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 2/163 (1%)

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
            LI  K +HA + K    +  F A+ L+ +Y+  G +  A  VF         + N MI+
Sbjct: 59  TLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIA 118

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           GF R+ + +EV  LF  M    +  N  T +  L AC+ +   E G       V++   L
Sbjct: 119 GFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHL 178

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            +++  S M++ L + G + +A  +   MP +     W S++ 
Sbjct: 179 -HLYVGSSMVNFLVKRGYLADAQKVFDGMP-EKDVVCWNSIIG 219


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/559 (38%), Positives = 326/559 (58%), Gaps = 19/559 (3%)

Query: 52  GKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++  A K+  M    D + S  +I    + G +  AR +FDEM +R +V+W T+I  Y 
Sbjct: 155 GRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYR 214

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            N R   A  LF  M  + +  ++   +   L       + F      V  +K      V
Sbjct: 215 QNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEF----FEVMPMKP-----V 265

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
               A++  + + G IS A RVF+ M +R+  TW  M+  + +     EAL LF + Q  
Sbjct: 266 IACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQ 325

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  +  ++ S++  CA LA+L  G+QVHA L +  F  +++ AS L+ MY KCG +V A
Sbjct: 326 GVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKA 385

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF     K++++WN++ISG++ H    E + +F +M  +G  PN+ T I++L+ACS+ 
Sbjct: 386 KLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYA 445

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G +E+G   F+ M  +  V P V HYSC +D+LGRAG + +A +LI +M     A++WG+
Sbjct: 446 GKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGA 505

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +C+ +  L+LAE+AAK+LF  EPDNAG ++LLS+I A+  +W +VA  RK +R + V
Sbjct: 506 LLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNV 565

Query: 471 KKEKSKSWVEI---------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            K    SW+E+          G +NHP  A I   LEK    +++ GY P+  H LHDV+
Sbjct: 566 SKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVD 625

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K + L  HSE+LA+ +GL+ L  GVPIR+MKNLR+CGDCH+ +K  S++  RE I+R
Sbjct: 626 EEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILR 685

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF NG CSC D+W
Sbjct: 686 DANRFHHFNNGECSCRDYW 704



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 162/363 (44%), Gaps = 58/363 (15%)

Query: 75  INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
           I+  S+ G I+ ARK FD +  + I SWN+I+  Y +NG  +EA  LF  M         
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEM--------- 74

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
                                           +RNV     L+  Y K  +I +A  VFE
Sbjct: 75  -------------------------------SERNVVSWNGLVSGYIKNRMIVEARNVFE 103

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
            MPERN V+W++MV G++Q  +  EA  LF R      E N+ + + +         + +
Sbjct: 104 LMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP----ERNEVSWTVMFGGLIDDGRIDK 159

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
            ++++ ++       ++ A+++++    + G V +A  +F  + E+NVV W TMI+G+ +
Sbjct: 160 ARKLYDMMPV----KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQ 215

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           + R      LFE M +      E ++ S+L   +  G +E  + +F++M      +  V 
Sbjct: 216 NNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFEVM-----PMKPVI 266

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-QLFG 433
             + MI   G  G I +A  +   M     A+  G + A  R    LE  ++ A+ Q  G
Sbjct: 267 ACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQG 326

Query: 434 MEP 436
           + P
Sbjct: 327 VRP 329



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 168/348 (48%), Gaps = 21/348 (6%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ N L++ Y K  +I  AR VF+ MP+R +VSW  ++  Y   G   EA +LF  M 
Sbjct: 78  NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM- 136

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                  +E + + +         + + ++L+         ++V   T ++    + G +
Sbjct: 137 ----PERNEVSWTVMFGGLIDDGRIDKARKLY----DMMPVKDVVASTNMIGGLCREGRV 188

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A  +F+ M ERN VTW++M+ G+ QN   + A  LF   +V+  E  + + +S++   
Sbjct: 189 DEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLF---EVMP-EKTEVSWTSMLLGY 244

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
                +   ++   V+        + A ++++  + + G +  A  VF  +E+++   W 
Sbjct: 245 TLSGRIEDAEEFFEVMPM----KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWR 300

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK- 365
            MI  + R    +E + LF +MQ+ G+ P+  + IS+LS C+ +  ++ G+     +V+ 
Sbjct: 301 GMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           Q +   +V+  S ++ +  + G + +A  L+ +        MW S+++
Sbjct: 361 QFD--DDVYVASVLMTMYVKCGELVKA-KLVFDRFSSKDIIMWNSIIS 405



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
             +L + L  CA   +   G+  HA ++    ++D   +++L+  Y KCG +  A+ VFD
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFD 390

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
               + I+ WN+II  Y ++G  +EA+ +F  M   G  P ++ T+ ++L AC+    + 
Sbjct: 391 RFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMP-NKVTLIAILTACSYAGKLE 449

Query: 153 ECKQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVA 209
           E  ++      K  +   V   +  +D+  + G +  A  + ESM  + + T W +++ 
Sbjct: 450 EGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLG 508



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 119/258 (46%), Gaps = 26/258 (10%)

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           K++  +L +T   S     S  +   ++ G + +A   F  ++ K +  WN+++SG+  +
Sbjct: 2   KRLKLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSN 61

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               E   LF++M +     N  ++  ++S      M+ + ++ F+LM ++     NV  
Sbjct: 62  GLPKEARQLFDEMSER----NVVSWNGLVSGYIKNRMIVEARNVFELMPER-----NVVS 112

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATAS---MWGSLLASCRNYRNLELAEIAAKQLF 432
           ++ M+    + G++ EA  L   MP     S   M+G L+   R  +        A++L+
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDK--------ARKLY 164

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-IKGKRNHPRIA 491
            M P    + +  +N+     R   V  AR LI D E+++    +W   I G R + R+ 
Sbjct: 165 DMMP--VKDVVASTNMIGGLCREGRVDEAR-LIFD-EMRERNVVTWTTMITGYRQNNRV- 219

Query: 492 EIYSKLEKLVEEMKKLGY 509
           ++  KL +++ E  ++ +
Sbjct: 220 DVARKLFEVMPEKTEVSW 237


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/532 (37%), Positives = 332/532 (62%), Gaps = 22/532 (4%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G +  AR+ FD+MP+R + SW +++ +Y  +G  + A  +F +M       ++    +++
Sbjct: 130 GQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM-----PEWNLVAWTAM 184

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L   +   DV   K+    A  +  +R++   TA+L  YA  G +     +F+ MPER+ 
Sbjct: 185 LTGYSLSGDVVRAKR----AFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDL 240

Query: 202 VTWSSMVAGFVQNELYEEALILFRR-----AQVLGLEYNQFTISSVICACAGLAALIQGK 256
           ++W++MVA  V+N+L EE+  LF R     A   G+  N+ T  +++ AC+ L AL +G+
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGR 300

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           ++HA + + GF +++  +++LV+ Y +CG + DA  VF G+  ++V+ W++MIS F++  
Sbjct: 301 KIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRG 360

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R  E M L+ +M   G  P++  +ISVL ACS+ G+VE    +F  +V    V P + HY
Sbjct: 361 RVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHY 420

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           +CM+D+LGRAG + +A DL+  MPF     ++ ++L++C+ Y ++E  E AA+ +F ++P
Sbjct: 421 ACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDP 480

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHP 488
           +N+  ++ L+NIY+A +R ++ AR RKL+ +  +KK+   SW+E        I G + HP
Sbjct: 481 ENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHP 540

Query: 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG 548
           +  EIY+++++L  +MK+ GY  +T+  L DVE+  K+ LL +HSEKLA+ FGL+   PG
Sbjct: 541 QRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPG 600

Query: 549 VPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            P+RI+KNLR+C DCH+  K  S++ GRE +VRD NRFHHF NG CSC D+W
Sbjct: 601 APLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C+   A   G+  HA +   G + D + SN L+NFY +CG +  A+ VFD M
Sbjct: 282 TFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM 341

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA------AK 148
            +R ++SW+++I ++   GR  EA+ L+  ML EG  P  +    SVL AC+      A 
Sbjct: 342 RRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLP-DDIIFISVLFACSNSGVVEAS 400

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            D F             ++  +     ++DV  + G + DA  +   MP
Sbjct: 401 GDFFRS-----IVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMP 444



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 36/264 (13%)

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
             A  DR+ F    +L +YA+ G +S+A  VF+ MP  +  +W+++++ F  +  +EEA 
Sbjct: 15  FDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAK 74

Query: 222 ILFRRAQVLGL---------------------EYNQFTISSVICACAGLAALIQGKQVHA 260
            LF   Q   L                      ++Q     ++   A LAA  +  Q+  
Sbjct: 75  TLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMEN 134

Query: 261 VLCKTGFGS----NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
              +  F      N+F+ +SL+  Y + G V  A  VF  + E N+V W  M++G+S   
Sbjct: 135 --ARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSG 192

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
             V     F+ M +  L      + ++LSA +  G +   +  F  M ++     ++  +
Sbjct: 193 DVVRAKRAFDSMPERDL----IAWTAMLSAYAFNGHLRYTREIFQRMPER-----DLISW 243

Query: 377 SCMIDILGRAGLIHEAYDLILNMP 400
           + M+  L    L+ E+ +L   MP
Sbjct: 244 ATMVAALVENDLLEESKELFDRMP 267



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 14/158 (8%)

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           M+ + GCV  A  +F  I +++   W  M+S ++R         +F++M +  L     +
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSL----GS 56

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           + ++LSA +  G  E+ K+ FD M ++     ++  ++ M+ +L     I +A      M
Sbjct: 57  WTALLSAFALSGHHEEAKTLFDTMQER-----DLIAWTIMLTVLATFSNIEDAKYHFDQM 111

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
           P +     W ++LA+      +E     A++ F   P+
Sbjct: 112 P-ERDLVAWTAMLAANAERGQME----NARETFDQMPE 144


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 346/575 (60%), Gaps = 14/575 (2%)

Query: 38   ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
            +TL SC+       G+  H +    GL+ D   SN L+  Y++   I+  +KVF +MP+ 
Sbjct: 562  STLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEY 621

Query: 98   CIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
              VSWN+ IG+         +A+  F+ M++ G  P +  T  ++L A ++   +    Q
Sbjct: 622  DQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRP-NRVTFINILAAVSSFSVLGLGHQ 680

Query: 157  LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQNE 215
            +H   LK ++  +  +  ALL  Y KC  + D   +F  M ER +EV+W+SM++G++ + 
Sbjct: 681  IHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSG 740

Query: 216  LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
            +  +A+ L       G + + FT ++V+ ACA +A L +G +VHA   +    S++   S
Sbjct: 741  ILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGS 800

Query: 276  SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            +LVDMYAKCG +  A   F  +  +N+  WN+MISG++RH    + + +F +M+Q G  P
Sbjct: 801  ALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSP 860

Query: 336  NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            +  T++ VLSACSH+G+V++G  +F  M + + + P + H+SCM+D+LGRAG + +  D 
Sbjct: 861  DHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDF 920

Query: 396  ILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            I  MP D    +W ++L +C   N RN EL + AAK L  +EP NA N++LLSN++AA  
Sbjct: 921  IKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGG 980

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
             WE+V  AR  +R + VKK+   SWV +K        G + HP   +IY KL++L+ +++
Sbjct: 981  NWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIR 1040

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
              GY PET++ L+D+E   K+ELL +HSEKLA+ F ++     +PIRIMKNLR+CGDCH+
Sbjct: 1041 DAGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHT 1099

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              K+ S+I GR+ I+RD NRFHHF  G CSC D+W
Sbjct: 1100 AFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 39/423 (9%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKC-GLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G   HA I  +   +D + SN+L++ YS C G I  A +VFDE+  R  V+WN+II  Y 
Sbjct: 262 GMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYC 321

Query: 111 TNGREQEAVALFINMLREG---KTPYSEFTVSSVLCACAAKRD--VFECKQLHVFALKAA 165
             G    A  LF  M  EG       +E+T+ S++ A  +  D  +   +Q+     K+ 
Sbjct: 322 RRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSG 381

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
             R+++VG+AL++ +A+ GL+  A  +F+ M +RN VT + ++ G  +    EEA  +F+
Sbjct: 382 FLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFK 441

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGK----QVHAVLCKTGF-GSNMFAASSLVDM 280
             + L +E N  ++  ++      + L +GK    +VHA L ++G   + +   ++LV+M
Sbjct: 442 EMKDL-VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNM 500

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y KC  + +A  VF  +  K+ V WN+MISG   + R  E +  F  M++ G+ P+  + 
Sbjct: 501 YGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSV 560

Query: 341 ISVLSACSHIGMVEKGKSY--------FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           IS LS+CS +G +  G+           DL V   N L  ++              I+E 
Sbjct: 561 ISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLY---------AETDSINEC 611

Query: 393 YDLILNMP-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG---NHLLLSNI 448
             +   MP +D  +  W S + +   Y   E + + A + F +E   AG   N +   NI
Sbjct: 612 QKVFFQMPEYDQVS--WNSFIGALAKY---EASVLQALKYF-LEMMQAGWRPNRVTFINI 665

Query: 449 YAA 451
            AA
Sbjct: 666 LAA 668



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 196/398 (49%), Gaps = 18/398 (4%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H ++   G  +D    N LIN Y + G +  ARK+FDEMPQ+ +VSW+ +I  YT N   
Sbjct: 163 HLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMP 222

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRDVFECKQLHVFALKAAMDRNVFVG 173
            EA +LF  ++  G  P + F V S L AC       +    Q+H F  K     ++ + 
Sbjct: 223 DEACSLFKGVISSGLLP-NHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 174 TALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
             L+ +Y+ C G I DA RVF+ +  RN VTW+S+++ + +      A  LF   Q+ G+
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 233 EY----NQFTISSVICACAGLA--ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
           E     N++T+ S++ A   LA   L+  +Q+   + K+GF  +++  S+LV+ +A+ G 
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGL 401

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           +  A  +F  + ++N V  N ++ G +R  +  E   +F++M+   +  N ++ + +LS 
Sbjct: 402 MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLST 460

Query: 347 CSHIGMVE----KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
            +    ++    KG+     + +   V   +   + ++++ G+   I  A  +   MP  
Sbjct: 461 FTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK 520

Query: 403 ATASMWGSLLASCRNYRNLELAE--IAAKQLFGMEPDN 438
            T S W S+++   +    E A       +  GM P N
Sbjct: 521 DTVS-WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSN 557



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 161/307 (52%), Gaps = 4/307 (1%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G   D    + L+N +++ GL+  A+ +F +M  R  V+ N ++       + +EA  +F
Sbjct: 381 GFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVF 440

Query: 123 INM--LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM-DRNVFVGTALLDV 179
             M  L E  +      +S+       K    + +++H +  ++ + D  + +G AL+++
Sbjct: 441 KEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNM 500

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y KC  I +A  VF+ MP ++ V+W+SM++G   NE +EEA+  F   +  G+  + F++
Sbjct: 501 YGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSV 560

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            S + +C+ L  L  G+Q+H    K G   ++  +++L+ +YA+   + +   VF  + E
Sbjct: 561 ISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPE 620

Query: 300 KNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            + V WN+ I   +++  SV + +  F +M QAG  PN  T+I++L+A S   ++  G  
Sbjct: 621 YDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ 680

Query: 359 YFDLMVK 365
              L++K
Sbjct: 681 IHALILK 687



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 168/326 (51%), Gaps = 22/326 (6%)

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +++   LH+   K     +VF    L+++Y + G +  A ++F+ MP++N V+WS +++G
Sbjct: 156 LYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISG 215

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA--GLAALIQGKQVHAVLCKTGFG 268
           + QN + +EA  LF+     GL  N F + S + AC   G   +  G Q+HA +CK    
Sbjct: 216 YTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCV 275

Query: 269 SNMFAASSLVDMYAKC-GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
           S+M  ++ L+ MY+ C G + DA+ VF  I+ +N V WN++IS + R   +V    LF  
Sbjct: 276 SDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSV 335

Query: 328 MQQAG----LHPNEQTYIS-VLSACSHIGMVEKGKSYFDLM---VKQHNVLPNVFHYSCM 379
           MQ  G    L PNE T  S V +ACS   + + G    + M   +++   L +++  S +
Sbjct: 336 MQMEGVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSAL 392

Query: 380 IDILGRAGLIHEAYDLILNMPFDATA-SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           ++   R GL+ +   +I    +D  A +M G ++   R ++  E A++  +    +E ++
Sbjct: 393 VNGFARYGLM-DCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINS 451

Query: 439 AGNHLLL------SNIYAANRRWEEV 458
               +LL      SN+    R+ +EV
Sbjct: 452 ESLVVLLSTFTEFSNLKEGKRKGQEV 477



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA      RG   HA  +   L +D +  + L++ Y+KCG I  A + F+ M
Sbjct: 763 TFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELM 822

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R I SWN++I  Y  +G  Q+A+ +F  M + G++P    T   VL AC+    V E 
Sbjct: 823 PVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSP-DHVTFVGVLSACSHVGLVDEG 881

Query: 155 -KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            K          +   +   + ++D+  + G +       ++MP + N + W +++ 
Sbjct: 882 YKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLG 938



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q L  E++++  SS         +L     +H  L KTGF  ++F  ++L+++Y + G +
Sbjct: 141 QQLDSEFDRYKTSS---------SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNL 191

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
           V A  +F  + +KN+V W+ +ISG++++    E   LF+ +  +GL PN     S L AC
Sbjct: 192 VSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRAC 251

Query: 348 SHIG 351
              G
Sbjct: 252 QQCG 255


>gi|413950787|gb|AFW83436.1| hypothetical protein ZEAMMB73_311793 [Zea mays]
          Length = 594

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/589 (38%), Positives = 347/589 (58%), Gaps = 23/589 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMG-----LNNDTLTSNILINFYSKCGLI 84
           A EL+ L   L +    RA  +G+  H  ++  G      ++  L ++ L+ FY++C L 
Sbjct: 11  ARELAELLVALSAA---RALPKGQQLHGHLLKAGHVPATASSHALLAHHLLTFYARCALP 67

Query: 85  SGARKVFDEMPQRCI-VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
             + + F ++P   +  +W+++I S+  NG    A   F  ML  G  P ++ ++     
Sbjct: 68  DLSLRAFLDLPAPPLPAAWSSLISSFAQNGLAAAAFDTFRRMLAAG-VPATDRSIPLAAK 126

Query: 144 ACAA----KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           A AA     R  F    LH  A K     +VFVG+A++D+YAKCG ++DA R+F+ MPER
Sbjct: 127 AVAAAETLSRPPFSPHALHGLAAKTPFAGDVFVGSAIVDMYAKCGHLADARRLFDDMPER 186

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N V+WS+++ G+    ++  A+ +FR A    +  N +T+SS+I  CA       G QVH
Sbjct: 187 NVVSWSALICGYADAGMHPAAMGIFRLALEEAVPVNDYTVSSIIRVCAAATLFELGAQVH 246

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A   KT   ++ F +SSLV +Y+KCG V  AY VF+   EKN+ +WN ++   ++H  + 
Sbjct: 247 ARATKTALDASPFVSSSLVSVYSKCGLVECAYRVFNEAPEKNLGIWNAVLIASAQHGHTA 306

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
                F +MQ+AG  PN  T++ +L+ACS+ G+V++GK YF +M K + + P   HY+ M
Sbjct: 307 AAFERFMEMQKAGFQPNHITFLCLLTACSYAGLVDEGKRYFSIM-KDYGIEPQAEHYASM 365

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGR GLI EA DLI +MP +   S+WG+LL SCR +++ + A IAAK+LF     ++
Sbjct: 366 VDLLGRVGLIKEALDLIESMPMEPPESVWGALLMSCRIFKDADTAAIAAKRLFETGSRSS 425

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIA 491
           G H+LLS+ YAA  R  + A ARK +RD+ V+KE   SW+E  G+        R H R  
Sbjct: 426 GAHMLLSSTYAAAGRHIDAALARKAMRDAGVRKETGLSWLEAAGEVHTFASNCRRHQRSE 485

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
           EIY  LE + E+M+  GY  +T   + DV+   K+  + +HSE+LA+  GL+ +  GVPI
Sbjct: 486 EIYKVLENVGEKMEAAGYVADTSAVVKDVDGDEKRATVRYHSERLAIGLGLLIVPHGVPI 545

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+MKNLR+C DCH+ +K+ ++  GR  ++RD  RFH F  G CSC DFW
Sbjct: 546 RVMKNLRVCDDCHNAIKYLTKCTGRVVVLRDNRRFHRFEGGVCSCGDFW 594


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 341/565 (60%), Gaps = 19/565 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G++ H   +  GL+ D +  N L++ Y++CG    AR +F  +P    VSWNT+I   + 
Sbjct: 342 GRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNA-VSWNTMIAGSSQ 400

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK----RDVFECKQLHVFALKAAMD 167
            G+ + AV LF  M  EG  P    T  ++L A A+     R + E ++LH   +     
Sbjct: 401 KGQMKRAVELFQRMQLEGMAPV-RATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYA 459

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFE--SMPERNEV-TWSSMVAGFVQNELYEEALILF 224
               +GTA++ +YA CG I +A+  F+  +M +R++V +W+++++   Q+   + AL  F
Sbjct: 460 SEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFF 519

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           RR  + G+  NQ T  +V+ ACAG AAL +G+ VH  L  +G  SN+F A++L  MY +C
Sbjct: 520 RRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRC 579

Query: 285 GCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           G +  A  +F  +  E++VV++N MI+ +S++  + E + LF +MQQ G  P+EQ+++SV
Sbjct: 580 GSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSV 639

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           LSACSH G+ ++G   F  M + + + P+  HY+C +D+LGRAG + +A +LI  M    
Sbjct: 640 LSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKP 699

Query: 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463
           T  +W +LL +CR YR+++   +A   +  ++P +   +++LSNI A   +W+E A  R 
Sbjct: 700 TVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRT 759

Query: 464 LIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEH 515
            +    ++KE  KSW+EIK        G R+HPR  EIY +LE+L  E++++GY P+T  
Sbjct: 760 EMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRL 819

Query: 516 DLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
            L  V+++ K+ LL  HSE+LA+  G+M       +R+MKNLR+C DCH+  KF S+I  
Sbjct: 820 VLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVN 878

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           +E +VRD +RFHHF +GSCSC D+W
Sbjct: 879 KEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 220/450 (48%), Gaps = 31/450 (6%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           S+++ AT  + L   L++   +R   +G+  HA+I+ +GL  +    N L+  Y KC  +
Sbjct: 21  SSSSGATRPAHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESL 78

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
               +VF  +  R   SW TII +YT +G+ + A+ +F  M +EG       T  +VL A
Sbjct: 79  GDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEG-VRCDAVTFLAVLKA 137

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           CA   D+ + + +H + +++ +     +   LL +Y  CG ++ A  +FE M ER+ V+W
Sbjct: 138 CARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSW 196

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           ++ +A   Q+     AL LF+R Q+ G+   + T+   +  CA    + Q + +H ++ +
Sbjct: 197 NAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRE 253

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           +G    +  +++L   YA+ G +  A  VF    E++VV WN M+  +++H    E  +L
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 325 FEKMQQAGLHPNEQTYISVLSACS--------HIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           F +M   G+ P++ T ++  + CS        H   +EKG       + +  VL N    
Sbjct: 314 FARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKG-------LDRDIVLGNA--- 363

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA-EIAAK-QLFGM 434
             ++D+  R G   EA  L   +P +A +  W +++A       ++ A E+  + QL GM
Sbjct: 364 --LLDMYTRCGSPEEARHLFKRIPCNAVS--WNTMIAGSSQKGQMKRAVELFQRMQLEGM 419

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKL 464
            P  A    LL  + +       +A  RKL
Sbjct: 420 APVRATYLNLLEAVASNPEEARAMAEGRKL 449



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 160/326 (49%), Gaps = 9/326 (2%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A   AT L+ L+A   +    RA   G+  H++I+  G  ++      ++  Y+ CG I 
Sbjct: 420 APVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAID 479

Query: 86  GARKVFDE--MPQR-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            A   F    M  R  +VSWN II S + +G  + A+  F  M   G  P ++ T  +VL
Sbjct: 480 EAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAP-NQITCVAVL 538

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNE 201
            ACA    + E + +H     + M+ N+FV TAL  +Y +CG +  A  +FE +  ER+ 
Sbjct: 539 DACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDV 598

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V +++M+A + QN L  EAL LF R Q  G   ++ +  SV+ AC+      +G ++   
Sbjct: 599 VIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRS 658

Query: 262 LCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL-WNTMISGFSRHARSV 319
           + ++ G   +    +  VD+  + G + DA  +   ++ K  VL W T++ G  R  R V
Sbjct: 659 MRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLL-GACRKYRDV 717

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLS 345
           +   L   M +  L P +++   VLS
Sbjct: 718 DRGRLANSMVRE-LDPGDESAYVVLS 742


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 327/576 (56%), Gaps = 14/576 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
             L +CA       G  CH  +   GL       + L++ YSKC  +  A +V +     
Sbjct: 126 TVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGN 185

Query: 98  C-----IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
                    +N+++ +   +GR  EAV +   M+ EG   +   T  SV+  C   RD+ 
Sbjct: 186 IDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEG-VVWDSVTYVSVMGLCGQIRDLG 244

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              Q+H   LK  +  +VFVG+ L+D++ KCG +  A +VF+ +  RN V W+S++  ++
Sbjct: 245 LGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYL 304

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN  +EE L L       G   N+FT + ++ A AG+AAL  G  +HA + K G  + + 
Sbjct: 305 QNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVI 364

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L++MY+KCGC+  +Y VF  +  ++++ WN MI G+S+H    + ++LF+ M  AG
Sbjct: 365 VGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAG 424

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             PN  T++ VLSAC+H+ +V +G  Y + ++K   V P + HY+C++ +L RAG++ EA
Sbjct: 425 ECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEA 484

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            + +           W  LL +C  +RN  L    A+ +  M+P + G + LLSN+YA  
Sbjct: 485 ENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKA 544

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
           R W+ V   RK++R+  VKKE   SW+EI+           NHP   +IY+K++ L+E +
Sbjct: 545 RSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMI 604

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K+LGY P  E  LHDVED +K+  L +HSEKLA+ +GLM +    PIR++KNLRIC DCH
Sbjct: 605 KQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCH 664

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + +K  S++  R  IVRD +RFHHF +G+C+C D W
Sbjct: 665 TAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 178/336 (52%), Gaps = 13/336 (3%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N LIN Y KC  +  AR +FDEM  R +VS+N ++G Y  +G   E V LF NM+     
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQ 118

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P +E+  ++VL ACA    VFE  Q H F  K  +  + FV ++L+ +Y+KC  +  A +
Sbjct: 119 P-NEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQ 177

Query: 192 VFESM-----PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           V ES       + +   ++S++   V++    EA+ +  R    G+ ++  T  SV+  C
Sbjct: 178 VLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLC 237

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
             +  L  G QVHA L K G   ++F  S LVDM+ KCG V+ A  VF G++ +NVV+W 
Sbjct: 238 GQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWT 297

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM--- 363
           ++++ + ++    E + L   M + G   NE T+  +L+A + +  +  G    DL+   
Sbjct: 298 SLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG----DLLHAR 353

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           V++  +   V   + +I++  + G I  +YD+  +M
Sbjct: 354 VEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDM 389



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + +  C + R    G   HA+++  GL  D    ++L++ + KCG +  ARKVFD +
Sbjct: 229 TYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGL 288

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V W +++ +Y  NG  +E + L   M REG T  +EFT + +L A A    +   
Sbjct: 289 QNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREG-TMSNEFTFAVLLNAFAGMAALRHG 347

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             LH    K  +   V VG AL+++Y+KCG I  +  VF  M  R+ +TW++M+ G+ Q+
Sbjct: 348 DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQH 407

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
            L ++AL+LF+     G   N  T   V+ ACA LA + +G
Sbjct: 408 GLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEG 448



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 7/251 (2%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           N+    +L+++Y KC  +  A  +F+ M  R+ V+++ ++ G++ +  + E + LF+   
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV 113

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
               + N++  ++V+ ACA    + +G Q H  L K G   + F  SSLV MY+KC  V 
Sbjct: 114 SSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVD 173

Query: 289 DAYFVF----SGIEEKNVVL-WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
            A  V       I+  N    +N++++      R  E + +  +M   G+  +  TY+SV
Sbjct: 174 LALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSV 233

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           +  C  I  +  G      ++K   +  +VF  S ++D+ G+ G +  A  +   +  + 
Sbjct: 234 MGLCGQIRDLGLGLQVHAQLLKG-GLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQ-NR 291

Query: 404 TASMWGSLLAS 414
              +W SL+ +
Sbjct: 292 NVVVWTSLMTA 302


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 337/592 (56%), Gaps = 44/592 (7%)

Query: 52  GKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGS 108
           G+V  A+ +  G+   +T+ SN +I  + + G +  AR++F+ +   +R +VSW+ ++  
Sbjct: 185 GEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSC 244

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           Y  N   +EA+ LF+ M   G        VS+ L AC+   +V   + +H  A+K  ++ 
Sbjct: 245 YEQNEMGEEALVLFVEMKGSGVAVDEVVVVSA-LSACSRVLNVEMGRWVHGLAVKVGVED 303

Query: 169 NVFVGTALLDVYAKCGLISDASRVFE--------------------------------SM 196
            V +  AL+ +Y+ CG I DA R+F+                                SM
Sbjct: 304 YVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM 363

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           PE++ V+WS+M++G+ Q+E + EAL LF+  Q+ G+  ++  + S I AC  LA L  GK
Sbjct: 364 PEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGK 423

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
            +HA + +     N+  +++L+DMY KCGCV +A  VF  +EEK V  WN +I G + + 
Sbjct: 424 WIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNG 483

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              + + +F  M++ G  PNE T++ VL AC H+G+V  G+ YF+ M+ +H +  N+ HY
Sbjct: 484 SVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
            CM+D+LGRAGL+ EA +LI +MP     + WG+LL +CR +R+ E+ E   ++L  ++P
Sbjct: 544 GCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQP 603

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHP 488
           D+ G H+LLSNIYA+   W  V   R ++    V K    S +E        + G + HP
Sbjct: 604 DHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHP 663

Query: 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG 548
           +I +I   L+ +  ++K  GY P T     D+++  K+  L  HSEKLA+ FGL+ + P 
Sbjct: 664 QINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPP 723

Query: 549 VPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PIR+ KNLRIC DCH+ +K  S+   R+ +VRD +RFHHF +G+CSC DFW
Sbjct: 724 TPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 191/444 (43%), Gaps = 81/444 (18%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---AR 88
           ++STL + LQSC   + P   K   ++ I  GL  D   ++ LINF S    +     + 
Sbjct: 2   KVSTLDSLLQSC---KCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSL 58

Query: 89  KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           ++F+ +      +WNTI+ ++           L   +          +T   +L  CAA+
Sbjct: 59  RIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAAR 118

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
              FE +QLH  A+ +  D +V+V   L+++YA CG +  A RVFE  P  + V+W++++
Sbjct: 119 VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLL 178

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           AG+VQ    EEA  +F                       G+                   
Sbjct: 179 AGYVQAGEVEEAERVFE----------------------GMPE----------------- 199

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFE 326
            N  A++S++ ++ + GCV  A  +F+G+   E+++V W+ M+S + ++    E ++LF 
Sbjct: 200 RNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFV 259

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK--------------------- 365
           +M+ +G+  +E   +S LSACS +  VE G+    L VK                     
Sbjct: 260 EMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCG 319

Query: 366 ----------QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
                         L ++  ++ MI    R G I +A  L  +MP     S W ++++  
Sbjct: 320 EIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVS-WSAMISGY 378

Query: 416 RNYRNLE--LAEIAAKQLFGMEPD 437
             +      LA     QL G+ PD
Sbjct: 379 AQHECFSEALALFQEMQLHGVRPD 402



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 3/208 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           + L + + +C        GK  HA I    L  + + S  LI+ Y KCG +  A +VF  
Sbjct: 404 TALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYA 463

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M ++ + +WN +I     NG  ++++ +F +M + G  P +E T   VL AC     V +
Sbjct: 464 MEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVP-NEITFMGVLGACRHMGLVND 522

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWSSMVAGF 211
            +   +    +  ++ N+     ++D+  + GL+ +A  + +SMP   +V TW +++   
Sbjct: 523 GRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGAC 582

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTI 239
            ++   E    L R+   L  +++ F +
Sbjct: 583 RKHRDNEMGERLGRKLIQLQPDHDGFHV 610


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/514 (38%), Positives = 320/514 (62%), Gaps = 9/514 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NIL   Y K G + GARK+FDEMP+R + +WN ++   T  G ++E++ LF++M 
Sbjct: 106 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMR 165

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG  P  EF + SV   CA  RDV   +Q+H + +++ +DR++ VG++L  +Y +CG +
Sbjct: 166 REGMHP-DEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 224

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +   V   +P  + V+ ++++AG  QN   E AL  F   + +G+  +  T  S I +C
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 284

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + LAAL QG+Q+H  + K G    +   + LV MY++CGC+ D+  VF G    +  L +
Sbjct: 285 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 344

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MIS +  H    + + LF++M   G  P++ T++++L ACSH G+ E+G   F+LM K 
Sbjct: 345 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 404

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P+V HY+C++D+LGR+G + EA  LIL+MP      +W +LL++C+  +N ++AE 
Sbjct: 405 YGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 464

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
            AK++  ++P ++ +++LLSNI A +RRW +V+  RK +RD+ V+KE   SWVE+K    
Sbjct: 465 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 524

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G  +HPR  EI   LE+++ ++++ GY P+    LHD+ED  K+  L HHSEKLA+
Sbjct: 525 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 584

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASR 572
            F  + L  GVPIR+MKNLR+C DCH  +K  S+
Sbjct: 585 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQ 618



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 9/259 (3%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT + ++ A A   D+   ++L     +    RNV     L   Y K G +  A ++F+ 
Sbjct: 77  FTANHLMLAYADLGDLTAAREL----FERIPRRNVMSWNILFGGYIKNGDLGGARKLFDE 132

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MPERN  TW++MVAG       EE+L LF   +  G+  ++F + SV   CAGL  ++ G
Sbjct: 133 MPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMHPDEFGLGSVSRCCAGLRDVVTG 192

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +QVHA + ++G   +M   SSL  MY +CGC+ +   V   +   ++V  NT+I+G +++
Sbjct: 193 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 252

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNV 373
             S   +  F  M+  G+  +  T++S +S+CS +  + +G+     ++K     V+P +
Sbjct: 253 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 312

Query: 374 FHYSCMIDILGRAGLIHEA 392
              +C++ +  R G + ++
Sbjct: 313 ---TCLVHMYSRCGCLGDS 328



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA  R  V G+  HA ++  GL+ D    + L + Y +CG +     V   +P
Sbjct: 176 LGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 235

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS NTII   T NG  + A+  F  M+R         T  S + +C+    + + +
Sbjct: 236 SLSIVSCNTIIAGRTQNGDSEGALEYFC-MMRSVGVAADVVTFVSAISSCSDLAALAQGQ 294

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   +KA +D+ V V T L+ +Y++CG + D+ RVF      +    S+M++ +  + 
Sbjct: 295 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHG 354

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
             ++A+ LF++    G E +  T  +++ AC+      +G     ++ KT G   ++   
Sbjct: 355 HGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGIQPSVKHY 414

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S     + V+W T++S
Sbjct: 415 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLS 451



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A ++ T  + + SC+   A  +G+  H +++  G++        L++ YS+CG +  + +
Sbjct: 271 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--- 146
           VF           + +I +Y  +G  Q+A+ LF  M+  G  P S+ T  ++L AC+   
Sbjct: 331 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEP-SDVTFLALLYACSHSG 389

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            K +  +C +L        +  +V   T ++D+  + G + +A  +  SMP   + V W 
Sbjct: 390 LKEEGMDCFEL--MTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWK 447

Query: 206 SMVA 209
           ++++
Sbjct: 448 TLLS 451


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 345/607 (56%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----------------------------- 65
           T    L+SCA+ +A   G+  H  ++ +G +                             
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195

Query: 66  --NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
              D ++   LI  Y+  G I  A+K+FDE+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           +M++    P  E T+ +V+ ACA    +   +Q+H++        N+ +  AL+D+Y+KC
Sbjct: 256 DMMKTNVRP-DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC 314

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +FE +P ++ ++W++++ G+    LY+EAL+LF+     G   N  T+ S++
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A+ VF+ I  K+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     LF +M++ G+ P++ T++ +LSACSH GM++ G+  F 
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFR 494

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + + P + HY CMID+LG +GL  EA ++I  M  +    +W SLL +C+ + N+
Sbjct: 495 TMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNV 554

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E  A+ L  +EP+N G+++LLSNIYA+  RW EVA+ R L+ D  +KK    S +EI
Sbjct: 555 ELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEI 614

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   ++K G+ P+T   L ++E+  K+  L HHS
Sbjct: 615 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHS 674

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 675 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 734

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 735 CSCNDYW 741



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 216/439 (49%), Gaps = 48/439 (10%)

Query: 11  FYYKSFSSSAIASASANANATELSTLQ--ATLQSCARERAPVRGKVCHAKIIGMGLNNDT 68
           + +    SS+     +  N   LS L    TLQS          ++ HA++I +GL+N  
Sbjct: 15  YPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSL---------RIIHAQMIKIGLHNTN 65

Query: 69  LTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
              + LI F        G   A  VF  + +  ++ WNT+   +  +     A+ L++ M
Sbjct: 66  YALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCM 125

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           +  G  P S +T   VL +CA  +   E +Q+H   LK   D +++V T+L+ +Y + G 
Sbjct: 126 ISLGLLPNS-YTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184

Query: 186 ISDASRVFESMPER-------------------------------NEVTWSSMVAGFVQN 214
           + DA +VF+  P R                               + V+W++M++G+ + 
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             Y+EAL LF+      +  ++ T+ +V+ ACA   ++  G+QVH  +   GFGSN+   
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 304

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+D+Y+KCG +  A  +F  +  K+V+ WNT+I G++      E ++LF++M ++G  
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAY 393
           PN+ T +S+L AC+H+G ++ G+     + K+   + N     + +ID+  + G I  A+
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424

Query: 394 DLILNMPFDATASMWGSLL 412
             + N     + S W +++
Sbjct: 425 Q-VFNSILHKSLSSWNAMI 442


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/575 (36%), Positives = 336/575 (58%), Gaps = 41/575 (7%)

Query: 66  NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
            D +   +LI+  +K G++   + +  + P R ++SW ++I +Y+   R +EAV  F  M
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           L  G  P  E TV +VL ACA  +D+   + LH+   +  M  +  +  AL+D+YAKCG 
Sbjct: 231 LSHGIAP-DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGD 289

Query: 186 ISDASRVFESM-----PE---------------------------RNEVTWSSMVAGFVQ 213
              A +VF+++     P+                           R+ +T++SM+ G++ 
Sbjct: 290 FGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIH 349

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    EAL+LF   +   L  + FT+ +++ ACA L AL QG+ +HA + +    ++++ 
Sbjct: 350 SGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYL 409

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMY KCG V +A  VF  + +++V  W  MI+G + +      +  F +M+  G 
Sbjct: 410 GTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGF 469

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  +YI+VL+ACSH  ++ +G+ YFD M   +N+ P + HY CMID+LGR+GL+ EA 
Sbjct: 470 QPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAM 529

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           DL+  MP    A +W S+L++CR +++++LA+ AA+ L  +EPD  G ++ L NIY  +R
Sbjct: 530 DLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSR 589

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           +WE  ++ R L+ + +VKK    S + + G+        ++HPRI EI + LE++   +K
Sbjct: 590 QWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLK 649

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            LGY P T     DV++  K++ L+ HSEKLA+ FGL+ L P +P+ I KNLR+C DCHS
Sbjct: 650 SLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHS 709

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  SR+  RE IVRD +RFHHF  G+CSC DFW
Sbjct: 710 AIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 157/329 (47%), Gaps = 53/329 (16%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------- 82
           A +  T+ A L +CA+ +    G+  H  +   G+         LI+ Y+KCG       
Sbjct: 236 APDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQ 295

Query: 83  ----------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
                           +I G         AR +FDEM  R I+++N+++  Y  +G+ +E
Sbjct: 296 VFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLRE 355

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           A+ LF++M R        FTV ++L ACA+   + + + LH    +  ++ ++++GTALL
Sbjct: 356 ALLLFMSM-RRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALL 414

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           D+Y KCG + +A+ VF+ M +R+  TW++M+AG   N + + AL  F + +  G + N  
Sbjct: 415 DMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSV 474

Query: 238 TISSVICACAGLAALIQGK----------QVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  +V+ AC+    L +G+           +H  +   G          ++D+  + G +
Sbjct: 475 SYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYG---------CMIDLLGRSGLL 525

Query: 288 VDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            +A  +   +  + N V+W +++S    H
Sbjct: 526 DEAMDLVKTMPIQPNAVIWASILSACRVH 554



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 170/374 (45%), Gaps = 71/374 (18%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVL-CA 144
           A  +FD MP    + ++T + + +  G +      LF  M R G  P   FT   +  C+
Sbjct: 56  ALHLFDRMPPSTFL-FDTALRACSRAGSDPHRPFLLFRRMRRAGVRP-DGFTFHFLFKCS 113

Query: 145 CAAKR--DVFECKQLHVFALKAAMDRNV-FVGTALLDVYAKCGLISDASRVFESM----- 196
            ++ R   +  C  LH   L+  +     FV  +L+ +Y + GL +DA R F+ +     
Sbjct: 114 SSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDA 173

Query: 197 --------------------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
                                     P R+ ++W+S++A + +     EA+  F+     
Sbjct: 174 VAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSH 233

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG----- 285
           G+  ++ T+ +V+ ACA L  L  G+ +H ++ + G  ++     +L+DMYAKCG     
Sbjct: 234 GIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293

Query: 286 -----------------CVVDAY----------FVFSGIEEKNVVLWNTMISGFSRHARS 318
                             ++D Y           +F  +E ++++ +N+M++G+    + 
Sbjct: 294 QQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQL 353

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E ++LF  M++  L  +  T +++L+AC+ +G +++G++     ++Q  V  +++  + 
Sbjct: 354 REALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRA-LHACIEQRLVEADIYLGTA 412

Query: 379 MIDILGRAGLIHEA 392
           ++D+  + G + EA
Sbjct: 413 LLDMYMKCGRVDEA 426


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/543 (38%), Positives = 326/543 (60%), Gaps = 24/543 (4%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM- 125
           D  + N+++  Y +   +  AR +F+ MP+R IVSWN ++  Y  NG   EA  +F  M 
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMP 84

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           L+ G       + + +L A      + + K+L     ++ MD  +     L+      G 
Sbjct: 85  LKNG------ISWNGLLAAYVQNGRIEDAKRL----FESKMDWTLVSWNCLMG-----GF 129

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           +     +F++MP+R+ ++WS+M+AG+ QN   EEAL  F   Q      N+ + +  +  
Sbjct: 130 VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALST 189

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ +AAL  G+Q+H  L K G+ +  +  ++L+ MY KCG + +A   F  I EK+VV W
Sbjct: 190 CSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSW 249

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NTMI G++RH    E + +FE M+  G+ P++ T +SVL+ACSH G+V++G  YF  M +
Sbjct: 250 NTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNR 309

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            + +   + HY+CM+D+LGRAG + EA +L+ NMPF+  A+ WG+LL + R + N EL E
Sbjct: 310 DYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 369

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--- 482
            AA+ +F MEP N+G ++LLS +YAA+ RW +  + R  +R+  VKK    SW+E++   
Sbjct: 370 KAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKI 429

Query: 483 -----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                G  +HP   +IY+ LE++  ++K+ GY   T    HDVE+  K  +L +HSEKLA
Sbjct: 430 HTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLA 489

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + +G++ +  G PIR++KNLR+C DCH+ +K+ S+I GR  I+RD +RFH+F  GSCSC 
Sbjct: 490 VAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCR 549

Query: 598 DFW 600
           DFW
Sbjct: 550 DFW 552



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+    L +C+   A   G+  H +++  G        N L+  Y KCG I  AR  F E
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +VSWNT+I  Y  +G  +EA+ +F  M   G  P  + T+ SVL AC+    V +
Sbjct: 241 ILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRP-DDATMVSVLAACSHAGLVDQ 299

Query: 154 CKQLHVFALKAAMDRNVFVG------TALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
             +        +M+R+  +       T ++D+  + G + +A  + ++MP E +  TW +
Sbjct: 300 GSEYFY-----SMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGA 354

Query: 207 MVA 209
           ++ 
Sbjct: 355 LLG 357



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 17/201 (8%)

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           +R++F    +L  Y +   +  A  +FE MPER+ V+W++M++G+ QN   +EA  +F +
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 227 AQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
             +  G+ +N             LAA +Q  ++     K  F S M    +LV      G
Sbjct: 83  MPLKNGISWNGL-----------LAAYVQNGRIEDA--KRLFESKM--DWTLVSWNCLMG 127

Query: 286 CVV-DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
             V     +F  + +++ + W+ MI+G+S++  S E +  F +MQ+     N  ++   L
Sbjct: 128 GFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCAL 187

Query: 345 SACSHIGMVEKGKSYFDLMVK 365
           S CS+I  +E G+     +VK
Sbjct: 188 STCSNIAALELGRQLHCRLVK 208


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 332/575 (57%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C       +G++ H  ++  GL  + +  N L++ Y K G +S +R+V  +M
Sbjct: 364 TFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM 423

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
           P+R +V+WN +IG Y  +    +A+A F  M  EG +  +  TV SVL AC    D+ E 
Sbjct: 424 PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSS-NYITVVSVLSACLLPGDLLER 482

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K LH + + A  + +  V  +L+ +YAKCG +S +  +F  +  RN +TW++M+A    
Sbjct: 483 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 542

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   EE L L  + +  G+  +QF+ S  + A A LA L +G+Q+H +  K GF  + F 
Sbjct: 543 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 602

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++  DMY+KCG + +   +      +++  WN +IS   RH    EV   F +M + G+
Sbjct: 603 FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGI 662

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P   T++S+L+ACSH G+V+KG +Y+D++ +   + P + H  C+ID+LGR+G + EA 
Sbjct: 663 KPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAE 722

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I  MP      +W SLLASC+ + NL+    AA+ L  +EP++   ++L SN++A   
Sbjct: 723 TFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTG 782

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RWE+V   RK +    +KK+++ SWV++K        G R HP+  EIY+KLE + + +K
Sbjct: 783 RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 842

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY  +T   L D ++ +K+  L +HSE+LAL + LM    G  +RI KNLRIC DCHS
Sbjct: 843 ESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHS 902

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF SR+ GR  ++RD  RFHHF  G CSC D+W
Sbjct: 903 VYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 196/381 (51%), Gaps = 6/381 (1%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            + + + +C R  +  R G   H  +   GL +D   S  +++ Y   GL+S +RKVF+E
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R +VSW +++  Y+  G  +E + ++  M  EG    +E ++S V+ +C   +D   
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEG-VGCNENSMSLVISSCGLLKDESL 178

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+    +K+ ++  + V  +L+ +    G +  A+ +F+ M ER+ ++W+S+ A + Q
Sbjct: 179 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 238

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   EE+  +F   +    E N  T+S+++     +     G+ +H ++ K GF S +  
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 298

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYA  G  V+A  VF  +  K+++ WN++++ F    RS++ + L   M  +G 
Sbjct: 299 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 358

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             N  T+ S L+AC      EKG+    L+V    +  N    + ++ + G+ G + E+ 
Sbjct: 359 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVS-GLFYNQIIGNALVSMYGKIGEMSESR 417

Query: 394 DLILNMP-FDATASMWGSLLA 413
            ++L MP  D  A  W +L+ 
Sbjct: 418 RVLLQMPRRDVVA--WNALIG 436



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 174/345 (50%), Gaps = 12/345 (3%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y+K G +  AR +FD MP R  VSWNT++      G   E +  F  M   G  P S F 
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKP-SSFV 60

Query: 138 VSSVLCACAAKRDVF-ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           ++S++ AC     +F E  Q+H F  K+ +  +V+V TA+L +Y   GL+S + +VFE M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           P+RN V+W+S++ G+      EE + +++  +  G+  N+ ++S VI +C  L     G+
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           Q+   + K+G  S +   +SL+ M    G V  A ++F  + E++ + WN++ + ++++ 
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              E   +F  M++     N  T  ++LS   H+   + G+    L+VK           
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM-----GFDSV 295

Query: 377 SCMIDILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
            C+ + L R    AG   EA  +   MP     S W SL+AS  N
Sbjct: 296 VCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS-WNSLMASFVN 339



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 160/325 (49%), Gaps = 2/325 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +++   + SC   +    G+    +++  GL +     N LI+     G +  A  +FD+
Sbjct: 161 NSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQ 220

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R  +SWN+I  +Y  NG  +E+  +F +++R      +  TVS++L           
Sbjct: 221 MSERDTISWNSIAAAYAQNGHIEESFRIF-SLMRRFHDEVNSTTVSTLLSVLGHVDHQKW 279

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H   +K   D  V V   LL +YA  G   +A+ VF+ MP ++ ++W+S++A FV 
Sbjct: 280 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 339

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    +AL L       G   N  T +S + AC       +G+ +H ++  +G   N   
Sbjct: 340 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 399

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV MY K G + ++  V   +  ++VV WN +I G++      + +  F+ M+  G+
Sbjct: 400 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 459

Query: 334 HPNEQTYISVLSACSHIG-MVEKGK 357
             N  T +SVLSAC   G ++E+GK
Sbjct: 460 SSNYITVVSVLSACLLPGDLLERGK 484



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 129/237 (54%), Gaps = 3/237 (1%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y K G +  A  +F+ MP RNEV+W++M++G V+  LY E +  FR+   LG++ + F 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 239 ISSVICACAGLAALI-QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           I+S++ AC    ++  +G QVH  + K+G  S+++ +++++ +Y   G V  +  VF  +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            ++NVV W +++ G+S      EV+ +++ M+  G+  NE +   V+S+C  +     G+
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
                +VK   +   +   + +I +LG  G +  A  +   M    T S W S+ A+
Sbjct: 181 QIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTIS-WNSIAAA 235


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 339/581 (58%), Gaps = 15/581 (2%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           +ST  A +++C R ++    K  +  II  G   +    N ++  + KCG+I  AR++FD
Sbjct: 123 VSTYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFD 182

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EMP+R + S+N+II  +   G  +EA  LF  ++ E  +     T + +L A A    V+
Sbjct: 183 EMPERNLFSYNSIISGFVNFGNYEEAFELF-KLMWEELSDCETHTFAVMLRASAGLWSVY 241

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             KQLHV ALK  +  N FV   L+D+Y+KCG I DA   FESMPE+  V W+++VAG+ 
Sbjct: 242 VGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYA 301

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            +   EEAL L    +  G+  +QFT+S +I     LA L   KQ HA L ++GF S + 
Sbjct: 302 LHGYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIV 361

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           A ++LVD Y+K G V  A +VF  +  KN++ WN ++ G++ H R  + + LFE+M  A 
Sbjct: 362 ANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAK 421

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T+++VLSAC++ G+ E+G   F  M + H + P   HY+CMI++LGR GL+ EA
Sbjct: 422 VAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEA 481

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
              I   P   T +MW +LL +CR   NLEL  + A++L+GM P+  GN+++L N+Y + 
Sbjct: 482 IAFIRRAPLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLGNYVVLYNMYNSM 541

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIA-------------EIYSKLEK 499
            +  E A   + +    +    + +WVE+ G + H  ++             E+Y K+++
Sbjct: 542 GKTAEAAGVLETLESKGLSMIPACTWVEV-GDQTHSFLSGDRFDSYNETVKREVYQKVDE 600

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           L+EE+ + GY  E ++ L DV++  ++ +  +HSEKLA+ +GLM      P++I +N RI
Sbjct: 601 LMEEIYEYGYLAEEKNLLPDVDEKEEERVGRYHSEKLAIAYGLMNTPEWNPLQITQNHRI 660

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCH  ++F S + GRE +VRD +RFHHF  G CSC  +W
Sbjct: 661 CKDCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 137/282 (48%), Gaps = 3/282 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E  T    L++ A   +   GK  H   + +G+ ++T  S  LI+ YSKCG I  AR  F
Sbjct: 223 ETHTFAVMLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAF 282

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + MP++  V+WN I+  Y  +G  +EA+ L   M R+      +FT+S ++        +
Sbjct: 283 ESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEM-RDSGVSMDQFTLSIMIRISTRLAKL 341

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              KQ H   +++  +  +   TAL+D Y+K G +  A  VF+ +P +N ++W++++ G+
Sbjct: 342 ELTKQAHASLIRSGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGY 401

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSN 270
             +    +A+ LF R     +  N  T  +V+ ACA      QG ++   + +  G    
Sbjct: 402 ANHGRGTDAVRLFERMIAAKVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPR 461

Query: 271 MFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISG 311
               + ++++  + G + +A  F+     +  V +W  +++ 
Sbjct: 462 AMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNA 503


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 333/560 (59%), Gaps = 11/560 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           + G+  HA  +   L++D   +N L++ Y KC  +  + +VFD M  +  VSW TII  Y
Sbjct: 382 INGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACY 441

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             + R  EA+  F    +EG        + S+L AC+  + +   KQ+H +A++  +  +
Sbjct: 442 AQSSRYSEAIGKFRTAQKEG-IKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LD 499

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + +   ++D+Y +CG +  A  +FE + +++ VTW+SMV  F +N L  EA+ LF +   
Sbjct: 500 LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLN 559

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G++ +   +  ++ A AGL++L +GK++H  L +  F       SSLVDMY+ CG +  
Sbjct: 560 AGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNY 619

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF   + K+VVLW  MI+    H    + + +F++M + G+ P+  +++++L ACSH
Sbjct: 620 ALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSH 679

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
             +V++GK Y D+MV ++ + P   HY+C++D+LGR+G   EAY  I +MP +  + +W 
Sbjct: 680 SKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWC 739

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL +CR ++N ELA IA  +L  +EPDN GN++L+SN++A   +W  V   R  + +  
Sbjct: 740 ALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQG 799

Query: 470 VKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLG-YKPETEHDLHDV 520
           ++K+ + SW+EI            +H     I+ KL ++ E++++ G Y  +T   LHDV
Sbjct: 800 LRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDV 859

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
            +  K +LL  HSE+LA++FGL+    G P+RI KNLR+CGDCH F K  S++  RE +V
Sbjct: 860 SEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVV 919

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD NRFHHF+ G+CSC DFW
Sbjct: 920 RDANRFHHFSGGTCSCGDFW 939



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 186/336 (55%), Gaps = 10/336 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMG-LNNDT--LTSNILINFYSKCGLISGARKVFDEMP 95
            L   A  RA   G+  HA  +  G L +D     +  L+  Y KCG +  A ++FD MP
Sbjct: 61  VLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMP 120

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLRE----GKTPYSEFTVSSVLCACAAKRDV 151
            R + SWN +IG+  ++G   EAV ++  M       G  P    T++SVL AC A+ D 
Sbjct: 121 ARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAP-DGCTLASVLKACGAEGDG 179

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAG 210
               ++H  A+K+ +DR+  V  AL+ +YAKCGL+  A RVFE M + R+  +W+S ++G
Sbjct: 180 RCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISG 239

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            VQN ++ EAL LFRR Q  G   N +T   V+  CA LA L  G+++HA L K G   N
Sbjct: 240 CVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN 299

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   ++L+ MYA+CG V  A  VF  I +K+ + WN+M+S + ++    E +  F +M Q
Sbjct: 300 I-QCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQ 358

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            G +P+    +S+LSA  H+G +  G+      VKQ
Sbjct: 359 NGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ 394



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 208/421 (49%), Gaps = 10/421 (2%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           AS      A +  TL + L++C  E     G   H   +  GL+  TL +N L+  Y+KC
Sbjct: 152 ASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKC 211

Query: 82  GLISGARKVFDEMPQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           GL+  A +VF+ M   R + SWN+ I     NG   EA+ LF  M  +G +  S +T   
Sbjct: 212 GLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNS-YTTVG 270

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           VL  CA    +   ++LH   LK   + N+    ALL +YA+CG +  A RVF  + +++
Sbjct: 271 VLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKD 329

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W+SM++ +VQN LY EA+  F      G   +   I S++ A   L  LI G++VHA
Sbjct: 330 YISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHA 389

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
              K    S++  A++L+DMY KC  V  +  VF  +  K+ V W T+I+ +++ +R  E
Sbjct: 390 YAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSE 449

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            +  F   Q+ G+  +     S+L ACS +  +   K      ++  N L ++   + +I
Sbjct: 450 AIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIR--NGLLDLILKNRII 507

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL--ELAEIAAKQL-FGMEPD 437
           DI G  G +  A + I  M        W S++ +C     L  E   +  K L  G++PD
Sbjct: 508 DIYGECGEVCYALN-IFEMLDKKDIVTWTSMV-NCFAENGLLHEAVALFGKMLNAGIQPD 565

Query: 438 N 438
           +
Sbjct: 566 S 566


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/574 (35%), Positives = 326/574 (56%), Gaps = 42/574 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       G   H  I+ +GL+ +    N L+  Y KCG +  ARKV D+M
Sbjct: 139 TFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQM 198

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN+++  Y  +G+  +A+ +                                C
Sbjct: 199 PYRDVVSWNSMVAGYAQSGQFDDALEI--------------------------------C 226

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++   +L    D       + +  Y     +     +FE M ++N ++W+ M+A +V N
Sbjct: 227 KEMD--SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNN 284

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +  EA+ LF + +  G++ +  TI+S++ AC  L+AL  G+++H  + K     N+   
Sbjct: 285 SMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLE 344

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCGC+ +A  VF  +  ++VV W +M+S + R  +  + + LF KM  +G +
Sbjct: 345 NALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQN 404

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+   ++SVLSACSH G++++G+ YF +M +Q+ ++P + H++CM+D+ GRAG + EAY 
Sbjct: 405 PDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYS 464

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +    +WG+LL++CR +  +++  +AA  LF + P  +G ++LLSNIYA    
Sbjct: 465 FIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGM 524

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W++V   R  ++   +KK    S VE+ G+        + HP+   IY +L+ LV +MK+
Sbjct: 525 WKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKE 584

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P+TE  LHDVE   K+  L  HSEKLA+ F ++    G PIRI KNLR+CGDCH  
Sbjct: 585 LGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIA 644

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  R  IVRD NRFHHF+NG CSC D+W
Sbjct: 645 IKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 190/386 (49%), Gaps = 39/386 (10%)

Query: 56  HAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR 114
           H+KI I   L  D   +  L+  YS  G  S AR +FD   ++ +V +N +I SY  N  
Sbjct: 58  HSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNL 117

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
             EA+++F  ML     P   +T   VL AC+   ++    Q+H   +K  +D N+F+G 
Sbjct: 118 YVEALSIFQVMLSCAFNP-DHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGN 176

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           AL+ +Y KCG + +A +V + MP R+ V+W+SMVAG+ Q+  +++AL + +    L L +
Sbjct: 177 ALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNH 236

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           +  T++S                +  V+C T   +  +  +                 +F
Sbjct: 237 DAGTMAS----------------LSPVVCYTSLENVQYIHN-----------------MF 263

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             + +KN++ WN MI+ +  ++   E + LF +M++ G+ P+  T  S+L AC  +  + 
Sbjct: 264 ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALF 323

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-A 413
            G+      +++ N+ PN+   + ++D+  + G + EA D+   M      S W S++ A
Sbjct: 324 LGRRLHKY-IEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVS-WTSMMSA 381

Query: 414 SCRNYRNLELAEIAAKQL-FGMEPDN 438
             R+ +  +   + AK L  G  PD+
Sbjct: 382 YGRSGQGYDAVALFAKMLDSGQNPDS 407



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 135/277 (48%), Gaps = 13/277 (4%)

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+  Y+  G  S A  +F+   E+N V ++ M+  +V N LY EAL +F+         +
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            +T   V+ AC+GL  L  G QVH  + K G  +N+F  ++LV MY KCGC+ +A  V  
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM--V 353
            +  ++VV WN+M++G+++  +  + + + ++M    L+ +  T  S+     +  +  V
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP---FDATASMWGS 410
           +   + F+ M K+     N+  ++ MI I     + +EA  L L M        A    S
Sbjct: 257 QYIHNMFERMTKK-----NLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
           LL +C +   L L     K +   E  N   +LLL N
Sbjct: 312 LLPACGDLSALFLGRRLHKYI---EKGNLRPNLLLEN 345


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/574 (35%), Positives = 326/574 (56%), Gaps = 42/574 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       G   H  I+ +GL+ +    N L+  Y KCG +  ARKV D+M
Sbjct: 139 TFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQM 198

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN+++  Y  +G+  +A+ +                                C
Sbjct: 199 PYRDVVSWNSMVAGYAQSGQFDDALEI--------------------------------C 226

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++   +L    D       + +  Y     +     +FE M ++N ++W+ M+A +V N
Sbjct: 227 KEMD--SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNN 284

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +  EA+ LF + +  G++ +  TI+S++ AC  L+AL  G+++H  + K     N+   
Sbjct: 285 SMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLE 344

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCGC+ +A  VF  +  ++VV W +M+S + R  +  + + LF KM  +G +
Sbjct: 345 NALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQN 404

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+   ++SVLSACSH G++++G+ YF +M +Q+ ++P + H++CM+D+ GRAG + EAY 
Sbjct: 405 PDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYS 464

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +    +WG+LL++CR +  +++  +AA  LF + P  +G ++LLSNIYA    
Sbjct: 465 FIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGM 524

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W++V   R  ++   +KK    S VE+ G+        + HP+   IY +L+ LV +MK+
Sbjct: 525 WKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKE 584

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P+TE  LHDVE   K+  L  HSEKLA+ F ++    G PIRI KNLR+CGDCH  
Sbjct: 585 LGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIA 644

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S+I  R  IVRD NRFHHF+NG CSC D+W
Sbjct: 645 IKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 190/386 (49%), Gaps = 39/386 (10%)

Query: 56  HAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR 114
           H+KI I   L  D   +  L+  YS  G  S AR +FD   ++ +V +N +I SY  N  
Sbjct: 58  HSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNL 117

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
             EA+++F  ML     P   +T   VL AC+   ++    Q+H   +K  +D N+F+G 
Sbjct: 118 YVEALSIFQVMLSCAFNP-DHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGN 176

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           AL+ +Y KCG + +A +V + MP R+ V+W+SMVAG+ Q+  +++AL + +    L L +
Sbjct: 177 ALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNH 236

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           +  T++S                +  V+C T   +  +  +                 +F
Sbjct: 237 DAGTMAS----------------LSPVVCYTSLENVQYIHN-----------------MF 263

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             + +KN++ WN MI+ +  ++   E + LF +M++ G+ P+  T  S+L AC  +  + 
Sbjct: 264 ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALF 323

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-A 413
            G+      +++ N+ PN+   + ++D+  + G + EA D+   M      S W S++ A
Sbjct: 324 LGRRLHKY-IEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVS-WTSMMSA 381

Query: 414 SCRNYRNLELAEIAAKQL-FGMEPDN 438
             R+ +  +   + AK L  G  PD+
Sbjct: 382 YGRSGQGYDAVALFAKMLDSGQNPDS 407



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 135/277 (48%), Gaps = 13/277 (4%)

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+  Y+  G  S A  +F+   E+N V ++ M+  +V N LY EAL +F+         +
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            +T   V+ AC+GL  L  G QVH  + K G  +N+F  ++LV MY KCGC+ +A  V  
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM--V 353
            +  ++VV WN+M++G+++  +  + + + ++M    L+ +  T  S+     +  +  V
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP---FDATASMWGS 410
           +   + F+ M K+     N+  ++ MI I     + +EA  L L M        A    S
Sbjct: 257 QYIHNMFERMTKK-----NLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
           LL +C +   L L     K +   E  N   +LLL N
Sbjct: 312 LLPACGDLSALFLGRRLHKYI---EKGNLQPNLLLEN 345


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/438 (45%), Positives = 289/438 (65%), Gaps = 8/438 (1%)

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V  AL+D+YAK G    A  VFE M +++ ++W+S+V G V N  YEEAL LF   +++
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  +Q  I++V+ ACA L  L  GKQVHA   K+G GS++   +SLV MYAKCGC+ DA
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +E ++V+ W  +I G++++ R  E +  +  M  +G+ P+  T+I +L ACSH 
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G+VE G+SYF  M + + + P   HY+CMID+LGR+G + EA +L+  M     A++W +
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LLA+CR + N+EL E AA  LF +EP NA  ++LLSN+Y+A  +WEE A+ R+L++   V
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 471 KKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
            KE   SW+E+  K        R+HPR AEIYSK+++++  +K+ GY P+    LHD+++
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K+  L +HSEKLA+ FGL+ + PG PIRI KNLRICGDCH+ MK+ S +  R  I+RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 583 LNRFHHFTNGSCSCWDFW 600
            N FHHF  G+CSC D+W
Sbjct: 423 SNCFHHFREGACSCSDYW 440



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            + A L +CA       GK  HA  +  GL +     N L++ Y+KCG I  A KVFD M
Sbjct: 70  VIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSM 129

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK------ 148
             + +++W  +I  Y  NGR +E++  + BM+  G  P    T   +L AC+        
Sbjct: 130 EIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKP-DFITFIGLLFACSHAGLVEHG 188

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSM 207
           R  F+  +  V+ +K   +        ++D+  + G + +A  +   M  + + T W ++
Sbjct: 189 RSYFQSME-EVYGIKPGPEHY----ACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKAL 243

Query: 208 VA 209
           +A
Sbjct: 244 LA 245


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/571 (35%), Positives = 335/571 (58%), Gaps = 9/571 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           AT  S    +  V GK CH   +  GL       N LI  YSKC  +  A ++   +P  
Sbjct: 128 ATAISSCDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGN 187

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            I  +N ++     +    EAV +   ++ EG   ++  T  ++   CA+ +D+   KQ+
Sbjct: 188 DIFCYNLVVNGLLQHTHMAEAVDVLKLIISEG-IEWNNATYVTIFRLCASLKDITLGKQV 246

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   LK+ +D +V++G++++D+Y KCG +      F+ +  RN V+W+S++A + QNE +
Sbjct: 247 HAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFF 306

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           EEAL LF + ++  +  N++T++ +  + AGL+AL  G Q+HA   K+G   N+   ++L
Sbjct: 307 EEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNAL 366

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY K G ++ A  VFS +   N++ WN +I+G S H    E + +F+ M   G  PN 
Sbjct: 367 IIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNY 426

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+I V+ AC+H+ +V++G  YF+ ++KQ  ++P + HY+C++ +L R+G + EA + + 
Sbjct: 427 VTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMR 486

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +   +     W +LL +C  +++ +     A+ L  +EP + G ++LLSN++A  RRW+ 
Sbjct: 487 SHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDH 546

Query: 458 VARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGY 509
           V   RKL+R+  VKKE   SW+EI+   +        HP    IY  ++ L+ +++ LGY
Sbjct: 547 VVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGY 606

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+ ++ LHD+ED +K + L +HSEKLA+ +GLM    G PI ++KNLR+C DCH+ +K 
Sbjct: 607 VPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKL 666

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++A R  +VRD NRFHHF NG CSC D+W
Sbjct: 667 ISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 153/268 (57%), Gaps = 1/268 (0%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N LIN Y KC  +S ARK+FD MP+R +VSW+ ++  Y  NG   E   LF  M+ +   
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             +E+ +++ + +C ++  V E KQ H +ALK+ ++ + +V  AL+ +Y+KC  +  A +
Sbjct: 121 FPNEYVIATAISSCDSQMYV-EGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQ 179

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +  ++P  +   ++ +V G +Q+    EA+ + +     G+E+N  T  ++   CA L  
Sbjct: 180 ILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKD 239

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           +  GKQVHA + K+    +++  SS++DMY KCG V+     F  ++ +NVV W ++I+ 
Sbjct: 240 ITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAA 299

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQT 339
           + ++    E + LF KM+   + PNE T
Sbjct: 300 YFQNEFFEEALNLFSKMEIDCIPPNEYT 327



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 1/222 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T     + CA  +    GK  HA+++   ++ D    + +I+ Y KCG +   R  FD 
Sbjct: 225 ATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDR 284

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R +VSW +II +Y  N   +EA+ LF  M  +   P +E+T++ +  + A    +  
Sbjct: 285 LQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPP-NEYTMAVLFNSAAGLSALCL 343

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             QLH  A K+ +  NV VG AL+ +Y K G I  A  VF +M   N +TW++++ G   
Sbjct: 344 GDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSH 403

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           + L +EAL +F+     G   N  T   VI ACA L  + +G
Sbjct: 404 HGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEG 445


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/584 (39%), Positives = 350/584 (59%), Gaps = 23/584 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T +  + SC  + + +  +  H  ++  G + D   +  LIN YS    I  ARKVFD+ 
Sbjct: 72  TYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKT 131

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R I  +N +  + +  G  +E + ++  M   G  P   FT + VL AC A     EC
Sbjct: 132 RNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIG-IPSDRFTYTYVLKACVAS----EC 186

Query: 155 --------KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
                   +++H   L+   D  V + T L+D+YAK G +S+AS VF  MP +N V+WS+
Sbjct: 187 FVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSA 246

Query: 207 MVAGFVQNELYEEALILFRRA--QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           M+A + +N    EAL LFR    +   L  N  T+ SV+ ACA LAAL QG+ +H  + +
Sbjct: 247 MIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILR 306

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            G  S +   S+LV MYA+CG +     VF  +++++VV WN++IS +  H    + + +
Sbjct: 307 KGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGI 366

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           FE+M   G+ P+  +++SVL ACSH G+V++GK  F+ M   H + P+V HY+CM+D+LG
Sbjct: 367 FEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLG 426

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RA  + EA  +I NM  +    +WGSLL SCR + N+ELAE A+ +LF +EP NAGN++L
Sbjct: 427 RANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVL 486

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           L++IYA    W+ V R +KL+    ++K   +SW+E+K K          +PR+ ++++ 
Sbjct: 487 LADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHAL 546

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L KL  E+K+ GY P+T+  L+D++ + K+ +++ HSEKLA+ FGL+    G  IRI K+
Sbjct: 547 LVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKS 606

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+C DCHSF KF S+ A +E +VRD+NRFHHF +G CSC D+W
Sbjct: 607 LRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 9/206 (4%)

Query: 228 QVLGLEYN--QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
           ++L LE N  Q T   +I +C    +L+  ++VH  L + GF  + F A+ L++MY+   
Sbjct: 60  ELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFD 119

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            + +A  VF     + + ++N +    S      EV+ ++ +M   G+  +  TY  VL 
Sbjct: 120 SIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLK 179

Query: 346 AC----SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           AC      + ++ KG+     +++ H     V   + ++D+  + G +  A  +   MP 
Sbjct: 180 ACVASECFVSLLNKGREIHAHILR-HGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPV 238

Query: 402 DATASMWGSLLAS-CRNYRNLELAEI 426
               S W +++A   +N +  E  E+
Sbjct: 239 KNVVS-WSAMIACYAKNGKAFEALEL 263


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/589 (35%), Positives = 337/589 (57%), Gaps = 10/589 (1%)

Query: 21   IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
            + S  ++  +    T  + L +C       +G++ H  ++  GL  + +  N L++ Y K
Sbjct: 440  LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 499

Query: 81   CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
             G +S +R+V  +MP+R +V+WN +IG Y  +    +A+A F  M  EG +  +  TV S
Sbjct: 500  IGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSS-NYITVVS 558

Query: 141  VLCACAAKRDVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
            VL AC    D+ E  K LH + + A  + +  V  +L+ +YAKCG +S +  +F  +  R
Sbjct: 559  VLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR 618

Query: 200  NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
            N +TW++M+A    +   EE L L  + +  G+  +QF+ S  + A A LA L +G+Q+H
Sbjct: 619  NIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLH 678

Query: 260  AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             +  K GF  + F  ++  DMY+KCG + +   +      +++  WN +IS   RH    
Sbjct: 679  GLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFE 738

Query: 320  EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            EV   F +M + G+ P   T++S+L+ACSH G+V+KG +Y+D++ +   + P + H  C+
Sbjct: 739  EVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICV 798

Query: 380  IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
            ID+LGR+G + EA   I  MP      +W SLLASC+ + NL+    AA+ L  +EP++ 
Sbjct: 799  IDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDD 858

Query: 440  GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
              ++L SN++A   RWE+V   RK +    +KK+++ SWV++K        G R HP+  
Sbjct: 859  SVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTM 918

Query: 492  EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
            EIY+KLE + + +K+ GY  +T   L D ++ +K+  L +HSE+LAL + LM    G  +
Sbjct: 919  EIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTV 978

Query: 552  RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            RI KNLRIC DCHS  KF SR+ GR  ++RD  RFHHF  G CSC D+W
Sbjct: 979  RIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 184/381 (48%), Gaps = 31/381 (8%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            + + + +C R  +  R G   H  +   GL +D   S  +++ Y   GL+S +RKVF+E
Sbjct: 175 VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 234

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R +VSW +++  Y+  G  +E + ++                          +D   
Sbjct: 235 MPDRNVVSWTSLMVGYSDKGEPEEVIDIY--------------------------KDESL 268

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+    +K+ ++  + V  +L+ +    G +  A+ +F+ M ER+ ++W+S+ A + Q
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 328

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   EE+  +F   +    E N  T+S+++     +     G+ +H ++ K GF S +  
Sbjct: 329 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 388

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYA  G  V+A  VF  +  K+++ WN++++ F    RS++ + L   M  +G 
Sbjct: 389 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 448

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             N  T+ S L+AC      EKG+    L+V    +  N    + ++ + G+ G + E+ 
Sbjct: 449 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVS-GLFYNQIIGNALVSMYGKIGEMSESR 507

Query: 394 DLILNMP-FDATASMWGSLLA 413
            ++L MP  D  A  W +L+ 
Sbjct: 508 RVLLQMPRRDVVA--WNALIG 526



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 174/371 (46%), Gaps = 37/371 (9%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA  +   +    L +N LIN Y+K G +  AR +FD MP R  VSWNT++     
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF-ECKQLHVFALKAAMDRNV 170
            G   E +  F  M   G  P S F ++S++ AC     +F E  Q+H F  K+ +  +V
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKP-SSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 209

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           +V TA+L +Y   GL+S + +VFE MP+RN V+W+S++ G+      EE + +++   + 
Sbjct: 210 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL- 268

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
                                   G+Q+   + K+G  S +   +SL+ M    G V  A
Sbjct: 269 ------------------------GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 304

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            ++F  + E++ + WN++ + ++++    E   +F  M++     N  T  ++LS   H+
Sbjct: 305 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 364

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGLIHEAYDLILNMPFDATAS 406
              + G+    L+VK            C+ + L R    AG   EA  +   MP     S
Sbjct: 365 DHQKWGRGIHGLVVKM-----GFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 419

Query: 407 MWGSLLASCRN 417
            W SL+AS  N
Sbjct: 420 -WNSLMASFVN 429



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 2/307 (0%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+    +++  GL +     N LI+     G +  A  +FD+M +R  +SWN+I  +Y  
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 328

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG  +E+  +F +++R      +  TVS++L            + +H   +K   D  V 
Sbjct: 329 NGHIEESFRIF-SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVC 387

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V   LL +YA  G   +A+ VF+ MP ++ ++W+S++A FV +    +AL L       G
Sbjct: 388 VCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG 447

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              N  T +S + AC       +G+ +H ++  +G   N    ++LV MY K G + ++ 
Sbjct: 448 KSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESR 507

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            V   +  ++VV WN +I G++      + +  F+ M+  G+  N  T +SVLSAC   G
Sbjct: 508 RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 567

Query: 352 -MVEKGK 357
            ++E+GK
Sbjct: 568 DLLERGK 574


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/559 (38%), Positives = 328/559 (58%), Gaps = 19/559 (3%)

Query: 52  GKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+V  A K+  M    D +    +I  Y + G +  AR +FDEMP+R +V+W  ++  Y 
Sbjct: 162 GRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYA 221

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NG+   A  LF     E     +E + +++L        + E   L      A   + V
Sbjct: 222 RNGKVDVARKLF-----EVMPERNEVSWTAMLLGYTHSGRMREASSL----FDAMPVKPV 272

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V   ++  +   G +  A RVF+ M ER+  TWS+M+  + +     EAL LFRR Q  
Sbjct: 273 VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQRE 332

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           GL  N  ++ SV+  C  LA+L  GKQVHA L ++ F  +++ AS L+ MY KCG +V A
Sbjct: 333 GLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRA 392

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF+    K+VV+WN+MI+G+S+H    E + +F  M  +G+ P++ T+I VLSACS+ 
Sbjct: 393 KQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYS 452

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G V++G   F+ M  ++ V P + HY+C++D+LGRA  ++EA  L+  MP +  A +WG+
Sbjct: 453 GKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGA 512

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +CR +  L+LAE+A ++L  +EP NAG ++LLSN+YA   RW +V   R+ I+   V
Sbjct: 513 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSV 572

Query: 471 KKEKSKSWVEIKGK---------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            K    SW+E++ K         + HP    I   LEKL   +++ GY P+    LHDV+
Sbjct: 573 TKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVD 632

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K   L +HSEKLA+ +GL+ +  G+PIR+MKNLR+CGDCHS +K  +++ GRE I+R
Sbjct: 633 EEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILR 692

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF +G CSC D+W
Sbjct: 693 DANRFHHFKDGHCSCKDYW 711



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 165/370 (44%), Gaps = 63/370 (17%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           +T++ N LI+ + K G++S AR+VFD MP R +VSW +++  Y  NG   EA  LF +M 
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMP 144

Query: 127 REGKTPYS--------EFTVSSV--LCACAAKRDVFE--------CKQLHVFALKAAMD- 167
            +    ++        E  V     L     ++DV          C++  +   +A  D 
Sbjct: 145 HKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDE 204

Query: 168 ---RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
              RNV   TA++  YA+ G +  A ++FE MPERNEV+W++M+ G+  +    EA  LF
Sbjct: 205 MPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLF 264

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
                     +   +  V+  C  +                GFG N              
Sbjct: 265 ----------DAMPVKPVV-VCNEMI--------------MGFGLN-------------- 285

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           G V  A  VF G++E++   W+ MI  + R    +E + LF +MQ+ GL  N  + ISVL
Sbjct: 286 GEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVL 345

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           S C  +  ++ GK     +V+      +++  S +I +  + G +  A  +    P    
Sbjct: 346 SVCVSLASLDHGKQVHAQLVRS-EFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDV 404

Query: 405 ASMWGSLLAS 414
             MW S++  
Sbjct: 405 V-MWNSMITG 413



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 171/404 (42%), Gaps = 87/404 (21%)

Query: 68  TLTSNILINFYSKCGLISGARKVFDE--MPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
           T +S+  I  Y++ G +  ARKVFDE  +P R + SWN ++ +Y    + +EA+ LF  M
Sbjct: 22  TTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM 81

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
            +                                        RN      L+  + K G+
Sbjct: 82  PQ----------------------------------------RNTVSWNGLISGHIKNGM 101

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           +S+A RVF++MP+RN V+W+SMV G+V+N    EA  LF                +V+  
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFW----------HMPHKNVVSW 151

Query: 246 CAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
              L  L+Q  +V     L       ++ A ++++  Y + G + +A  +F  + ++NVV
Sbjct: 152 TVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVV 211

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W  M+SG++R+ +      LFE M +     NE ++ ++L   +H G + +  S FD M
Sbjct: 212 TWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMREASSLFDAM 267

Query: 364 VKQHNVLPN-----------------VFH---------YSCMIDILGRAGLIHEAYDLIL 397
             +  V+ N                 VF          +S MI +  R G   EA  L  
Sbjct: 268 PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFR 327

Query: 398 NMPFDATASMWGSL---LASCRNYRNLELAEIAAKQLFGMEPDN 438
            M  +  A  + SL   L+ C +  +L+  +    QL   E D 
Sbjct: 328 RMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQ 371



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 3/182 (1%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A    +L + L  C    +   GK  HA+++    + D   +++LI  Y KCG +  A++
Sbjct: 335 ALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQ 394

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF+  P + +V WN++I  Y+ +G  +EA+ +F +M   G  P  + T   VL AC+   
Sbjct: 395 VFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSG-VPPDDVTFIGVLSACSYSG 453

Query: 150 DVFECKQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
            V E  +L      K  ++  +     L+D+  +   +++A ++ E MP E + + W ++
Sbjct: 454 KVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGAL 513

Query: 208 VA 209
           + 
Sbjct: 514 LG 515


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 337/590 (57%), Gaps = 42/590 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H   +   + +D   +N LI+ Y  CG +  A KVF  + ++ +VSWN++I  +  
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G   +A+ LF  M  E     S  T+  VL ACA  R++   +Q+  +  +  ++ N+ 
Sbjct: 210 KGSPDKALELFKKMESE-DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE------------- 218
           +  A+LD+Y KCG I DA R+F++M E++ VTW++M+ G+  +E YE             
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKD 328

Query: 219 ------------------EALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVH 259
                             EALI+F   Q+   ++ NQ T+ S + ACA + AL  G+ +H
Sbjct: 329 IVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIH 388

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           + + K G   N    S+L+ MY+KCG +  +  VF+ +E+++V +W+ MI G + H    
Sbjct: 389 SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGN 448

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + +F KMQ+A + PN  T+ +V  ACSH G+V++ +S F  M   + ++P   HY+C+
Sbjct: 449 EAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACI 508

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGR+G + +A   I  MP   + S+WG+LL +C+ + NL LAE+A  +L  +EP N 
Sbjct: 509 VDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRND 568

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           G H+LLSNIYA   +WE V+  RK +R + +KKE   S +EI         G   HP   
Sbjct: 569 GAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSE 628

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR-KQELLIHHSEKLALTFGLMCLCPGVP 550
           ++Y KL +++E++K  GY+PE    L  +E+   K++ L  HSEKLA+ +GL+       
Sbjct: 629 KVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKV 688

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           IR++KNLR+CGDCHS  K  S++  RE IVRD  RFHHF NG CSC DFW
Sbjct: 689 IRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 243/506 (48%), Gaps = 63/506 (12%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  H  +I  G  +D  +++ L      S    +  ARKVFDE+P+    +WNT+I +Y 
Sbjct: 47  KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           +      ++  F++M+ E +   +++T   ++ A A    +   + LH  A+K+A+  +V
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV 166

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FV  +L+  Y  CG +  A +VF ++ E++ V+W+SM+ GFVQ    ++AL LF++ +  
Sbjct: 167 FVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESE 226

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            ++ +  T+  V+ ACA +  L  G+QV + + +     N+  A++++DMY KCG + DA
Sbjct: 227 DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 286

Query: 291 YFVFSGIEE-------------------------------KNVVLWNTMISGFSRHARSV 319
             +F  +EE                               K++V WN +IS + ++ +  
Sbjct: 287 KRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPN 346

Query: 320 EVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
           E +I+F ++Q Q  +  N+ T +S LSAC+ +G +E G+ +    +K+H +  N    S 
Sbjct: 347 EALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR-WIHSYIKKHGIRMNFHVTSA 405

Query: 379 MIDILGRAGLIHEAYDLILNMP----FDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           +I +  + G + ++ ++  ++     F  +A + G  +  C N         A    + M
Sbjct: 406 LIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNE--------AVDMFYKM 457

Query: 435 EPDNA-GNHLLLSNIYAANRRWEEVARARKLIRDSE-----VKKEKSKS-WVEIKGKRNH 487
           +  N   N +  +N++ A      V  A  L    E     V +EK  +  V++ G+  +
Sbjct: 458 QEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGY 517

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPET 513
                    LEK V+ ++ +   P T
Sbjct: 518 ---------LEKAVKFIEAMPIPPST 534



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 143/315 (45%), Gaps = 33/315 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T+   L +CA+ R    G+   + I    +N +   +N +++ Y+KCG I  A+++FD  
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                         MPQ+ IV+WN +I +Y  NG+  EA+ +F 
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            +  +     ++ T+ S L ACA    +   + +H +  K  +  N  V +AL+ +Y+KC
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  +  VF S+ +R+   WS+M+ G   +    EA+ +F + Q   ++ N  T ++V 
Sbjct: 414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473

Query: 244 CACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKN 301
           CAC+    + + + + H +    G        + +VD+  + G +  A  F+ +     +
Sbjct: 474 CACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPS 533

Query: 302 VVLWNTMISGFSRHA 316
             +W  ++     HA
Sbjct: 534 TSVWGALLGACKIHA 548



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 9/254 (3%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS--DASRVFESMPERNEVTWSSMVAG 210
           + KQ H   ++     + +  + L  + A     S   A +VF+ +P+ N   W++++  
Sbjct: 45  QLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRA 104

Query: 211 FVQNELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           +        ++  F         Y N++T   +I A A +++L  G+ +H +  K+  GS
Sbjct: 105 YASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS 164

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++F A+SL+  Y  CG +  A  VF+ I+EK+VV WN+MI+GF +     + + LF+KM+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
              +  +  T + VLSAC+ I  +E G+      ++++ V  N+   + M+D+  + G I
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY-IEENRVNVNLTLANAMLDMYTKCGSI 283

Query: 390 HEAYDLILNMPFDA 403
            +A  L     FDA
Sbjct: 284 EDAKRL-----FDA 292


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/583 (39%), Positives = 343/583 (58%), Gaps = 20/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   + +C  +   VR    H  ++  G +     +N ++  YS+ G ++ AR+VF EM
Sbjct: 143 TLSGVIIACGDDVGLVRQ--LHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREM 200

Query: 95  PQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            +   R  VSWN +I +   +    EAV LF  M+R G      FT++SVL A    +D+
Sbjct: 201 GEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRG-LKVDMFTMASVLTAFTCVKDL 259

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAG 210
               Q H   +K+    N  VG+ L+D+Y+KC G + +  +VFE +   + V W++M++G
Sbjct: 260 VGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISG 319

Query: 211 FVQNE-LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           F Q E L E+ +  FR  Q  G   +  +   V  AC+ L++   GKQVHA+  K+    
Sbjct: 320 FSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPY 379

Query: 270 NMFAAS-SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           N  + + +LV MY+KCG V DA  VF  + E N+V  N+MI+G+++H   VE + LFE M
Sbjct: 380 NRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELM 439

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
            Q  + PN  T+I+VLSAC H G VE+G+ YF++M ++  + P   HYSCMID+LGRAG 
Sbjct: 440 LQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGK 499

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA  +I  MPF+  +  W +LL +CR + N+ELA  AA +   +EP NA  +++LSN+
Sbjct: 500 LKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNM 559

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKL 500
           YA+  RWEE A  ++L+R+  VKK+   SW+EI  K         +HP I EI+  + ++
Sbjct: 560 YASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEI 619

Query: 501 VEEMKKLGYKPETEHDL---HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           + +MK+ GY P+    L    +VE   K+  L++HSEKLA+ FGL+     VPI ++KNL
Sbjct: 620 LRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNL 679

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RICGDCH+ +K  S I GRE  VRD +RFH F  G CSC D+W
Sbjct: 680 RICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 135/405 (33%), Positives = 204/405 (50%), Gaps = 39/405 (9%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG--------- 82
           +L T +  L++C  +R  + GK  HA      +   T  SN     YSKCG         
Sbjct: 8   QLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSF 67

Query: 83  ----------------------LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
                                 LI  AR+VFDE+PQ  IVS+NT+I +Y   G  + A+ 
Sbjct: 68  DLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALR 127

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           LF   +RE +     FT+S V+ AC    DV   +QLH F +    D    V  A+L  Y
Sbjct: 128 LFAE-VRELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACY 184

Query: 181 AKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           ++ G +++A RVF  M E   R+EV+W++M+    Q+    EA+ LFR     GL+ + F
Sbjct: 185 SRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMF 244

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC-GCVVDAYFVFSG 296
           T++SV+ A   +  L+ G Q H ++ K+GF  N    S L+D+Y+KC G +V+   VF  
Sbjct: 245 TMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEE 304

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMI-LFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           I   ++VLWNTMISGFS++    E  I  F +MQ  G HP++ +++ V SACS++     
Sbjct: 305 IAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSV 364

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
           GK    L +K       V   + ++ +  + G +H+A  +   MP
Sbjct: 365 GKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP 409



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC-GLISGARK 89
            ++ T+ + L +    +  V G   H  +I  G + ++   + LI+ YSKC G +   RK
Sbjct: 241 VDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRK 300

Query: 90  VFDEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           VF+E+    +V WNT+I  ++      ++ +  F  M   G  P  + +   V  AC+  
Sbjct: 301 VFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHP-DDCSFVCVTSACSNL 359

Query: 149 RDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
                 KQ+H  A+K+ +  N V V  AL+ +Y+KCG + DA RVF++MPE N V+ +SM
Sbjct: 360 SSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSM 419

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +AG+ Q+ +  E+L LF       +  N  T  +V+ AC     + +G++   ++ K  F
Sbjct: 420 IAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMM-KERF 478

Query: 268 GSNMFAA--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMI 323
                A   S ++D+  + G + +A  +   +      + W T++    +H  +VE+ +
Sbjct: 479 RIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHG-NVELAV 536



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T  +++ AC     LI GK +HA+  K+    + + ++    +Y+KCG + +A   F   
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +  NV  +NT+I+ +++H+       +F+++ Q    P+  +Y ++++A +  G      
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQ----PDIVSYNTLIAAYADRGECRPAL 126

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILG-RAGLIHEAYDLILNMPFDATASMWGSLLA 413
             F   V++     + F  S +I   G   GL+ + +  ++   +D  AS+  ++LA
Sbjct: 127 RLF-AEVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLA 182


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/573 (37%), Positives = 336/573 (58%), Gaps = 14/573 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            L  CA       GK CH  ++  GL       N LI+ YS+C  +  A ++ D +P   
Sbjct: 134 VLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDD 193

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           + S+N+I+ +   +G   EA  +   M+ E    +   T  SVL  CA  RD+    Q+H
Sbjct: 194 VFSYNSILSALVESGCRGEAAQVLKRMVDEC-VIWDSVTYVSVLGLCAQIRDLQLGLQIH 252

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              LK  +  +VFV + L+D Y KCG + +A + F+ + +RN V W++++  ++QN  +E
Sbjct: 253 AQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFE 312

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           E L LF + ++     N+FT + ++ ACA L AL  G  +H  +  +GF +++   ++L+
Sbjct: 313 ETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALI 372

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           +MY+K G +  +Y VFS +  ++V+ WN MI G+S H    + +++F+ M  AG  PN  
Sbjct: 373 NMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYV 432

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI-- 396
           T+I VLSAC H+ +V++G  YFD ++K+ +V P + HY+CM+ +LGRAGL+ EA + +  
Sbjct: 433 TFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKT 492

Query: 397 -LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
              + +D  A  W +LL +C  +RN  L +   + +  M+P + G + LLSN++A  R+W
Sbjct: 493 TTQVKWDVVA--WRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKW 550

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKL 507
           + V + RKL+++  +KKE   SW++I+           NHP   +I+ K+++L+  +K L
Sbjct: 551 DGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPL 610

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY P+    LHDVED +K+  L HHSEKLAL +GLM + P  PIRI+KNLR+C DCH  +
Sbjct: 611 GYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAV 670

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           K  S+   R  IVRD NRFHHF  G C+C D W
Sbjct: 671 KLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 191/355 (53%), Gaps = 12/355 (3%)

Query: 52  GKVCHAKII---GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           GK  HA+++       ++D    N LIN YSKCG    ARK+FD M QR +VSW+ ++  
Sbjct: 42  GKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMG 101

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           Y   G   E + LF N++       +E+  + VL  CA    V E KQ H + LK+ +  
Sbjct: 102 YLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLL 161

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           + +V  AL+ +Y++C  +  A ++ +++P  +  +++S+++  V++    EA  + +R  
Sbjct: 162 HQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMV 221

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
              + ++  T  SV+  CA +  L  G Q+HA L KTG   ++F +S+L+D Y KCG V+
Sbjct: 222 DECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVL 281

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A   F G+ ++NVV W  +++ + ++    E + LF KM+     PNE T+  +L+AC+
Sbjct: 282 NARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACA 341

Query: 349 HIGMVEKGKSYFDLMV----KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            +  +  G      +V    K H ++ N      +I++  ++G I  +Y++  NM
Sbjct: 342 SLVALAYGDLLHGRIVMSGFKNHLIVGNA-----LINMYSKSGNIDSSYNVFSNM 391



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 146/284 (51%), Gaps = 4/284 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L  CA+ R    G   HA+++  GL  D   S+ LI+ Y KCG +  ARK FD +
Sbjct: 231 TYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGL 290

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+W  ++ +Y  NG  +E + LF  M  E   P +EFT + +L ACA+   +   
Sbjct: 291 RDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRP-NEFTFAVLLNACASLVALAYG 349

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             LH   + +    ++ VG AL+++Y+K G I  +  VF +M  R+ +TW++M+ G+  +
Sbjct: 350 DLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHH 409

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFA 273
            L ++AL++F+     G   N  T   V+ AC  LA + +G      ++ K      +  
Sbjct: 410 GLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEH 469

Query: 274 ASSLVDMYAKCGCVVDA-YFVFSGIEEK-NVVLWNTMISGFSRH 315
            + +V +  + G + +A  F+ +  + K +VV W T+++    H
Sbjct: 470 YTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIH 513


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 320/543 (58%), Gaps = 9/543 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D    N +I  Y   G +    ++F EMP R ++SW ++IG    +GR +EA+ LF  M+
Sbjct: 134 DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMM 193

Query: 127 REG-KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
             G +   +  T   V+ ACA    +++  Q+H    K     + ++  AL+  YA C  
Sbjct: 194 GCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQ 253

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + D+ RVF      N V W+++V G+  N  +E+AL +F      G+  NQ + +S + +
Sbjct: 254 MEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNS 313

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C GL AL  G+++H    K G  +++F  +SL+ MY +CG + D   +F  I +KN+V W
Sbjct: 314 CCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSW 373

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N++I G ++H   +  +  F +M ++ + P+E T+  +LSACSH GM +KG+  F    +
Sbjct: 374 NSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSE 433

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
             +    + HY+CM+DILGR+G + EA +LI NMP  A + +W  LL++C  +  LE+AE
Sbjct: 434 NKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAE 493

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR 485
            AAK +  +EP  +  ++LLSN+YA+  RW +V+R R+ ++   + K+  +SW+ IKG R
Sbjct: 494 RAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWR 553

Query: 486 N--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
           N        HP    IY KLE L  ++K+LGY P+    LHDVED +K+ +L +HSE+LA
Sbjct: 554 NEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLA 613

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+    G  I +MKNLR+CGDCHS +K  ++I  R+ IVRD  RFHHF +G CSC 
Sbjct: 614 IGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCG 673

Query: 598 DFW 600
           D+W
Sbjct: 674 DYW 676



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 170/351 (48%), Gaps = 44/351 (12%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I     C  ++ ARK+FDEMP+R +VSW T+I  +   G+ + A  LF  M 
Sbjct: 72  DVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKM- 130

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                P+                                  R++    +++  Y   G +
Sbjct: 131 -----PF----------------------------------RDIAAWNSMIYGYCCNGRV 151

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY--NQFTISSVIC 244
            D  R+F+ MP RN ++W+SM+ G  Q+   EEAL LFR+    G+E      T   VI 
Sbjct: 152 EDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVIT 211

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           ACA  +AL QG Q+HA + K G+  + + +++L+  YA C  + D+  VF G    NVV+
Sbjct: 212 ACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVI 271

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W  +++G+  + +  + + +F +M + G+ PN+ ++ S L++C  +  ++ G+      V
Sbjct: 272 WTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAV 331

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           K   +  +VF  + +I +  R G +++   +   +      S W S++  C
Sbjct: 332 KL-GLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVS-WNSVIVGC 380



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 144/295 (48%), Gaps = 21/295 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    + +CA   A  +G   HA +  +G + D   S  LI FY+ C  +  + +VF  
Sbjct: 204 STYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG 263

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                +V W  ++  Y  N + ++A+ +F  M+REG  P ++ + +S L +C     +  
Sbjct: 264 KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLP-NQSSFTSALNSCCGLEALDW 322

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H  A+K  ++ +VFVG +L+ +Y +CG ++D   +F+ + ++N V+W+S++ G  Q
Sbjct: 323 GREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQ 382

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +     AL  F +     +E ++ T + ++ AC+      +G+      C   + S   +
Sbjct: 383 HGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGR------CLFKYFSENKS 436

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEE-----------KNVVLWNTMISGFSRHAR 317
           A   +D YA   C+VD       +EE            N ++W  ++S  + H++
Sbjct: 437 AEVKLDHYA---CMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSK 488



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 88/204 (43%), Gaps = 41/204 (20%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I +A  VF+ +   +   ++ M+ G+ +N  ++ AL LF    V     +  + +S+I  
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV----KDVVSWNSMIKG 82

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C   A L   +++   + +     ++ + +++++ + + G +  A  +F  +  +++  W
Sbjct: 83  CFDCADLTMARKLFDEMPE----RSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAW 138

Query: 306 NTMISGF-------------------------------SRHARSVEVMILFEKMQQAGLH 334
           N+MI G+                                +H RS E + LF +M   G+ 
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 335 --PNEQTYISVLSACSHIGMVEKG 356
             P   TY  V++AC++   + +G
Sbjct: 199 VKPTSSTYCCVITACANASALYQG 222


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/599 (38%), Positives = 348/599 (58%), Gaps = 46/599 (7%)

Query: 46  ERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCG---------------------- 82
           E    +G+  HA +I  GLN++ +   N L+N Y+K G                      
Sbjct: 317 EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNS 376

Query: 83  LISG---------ARKVFDEMPQRCIVSWNTIIGSYT-TNGREQEAVALFINMLREGKTP 132
           LISG         A ++F  MP+   VSWN++IG+ + +     +AV  F+ M+R G   
Sbjct: 377 LISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR-GGWG 435

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
            S  T  ++L A ++        Q+H   LK  +  +  +G ALL  Y KCG +++  ++
Sbjct: 436 LSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKI 495

Query: 193 FESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           F  M E R+EV+W+SM++G++ NEL  +A+ L       G   + FT ++++ ACA +A 
Sbjct: 496 FARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVAT 555

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L +G +VHA   +    S++   S+LVDMY+KCG +  A   F  +  +NV  WN+MISG
Sbjct: 556 LERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISG 615

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           ++RH    + + LF +M   G  P+  T++ VLSACSH+G VE+G  +F  M + + + P
Sbjct: 616 YARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSP 675

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAK 429
            V H+SCM+D+LGRAG + E  D I +MP      +W ++L +C   N RN EL   AA+
Sbjct: 676 RVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAE 735

Query: 430 QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------- 482
            L  +EP NA N++LL+N+YA+  +WE+VA+AR  ++++ VKKE   SWV +K       
Sbjct: 736 MLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFV 795

Query: 483 -GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFG 541
            G + HP    IY KL +L  +M+  GY P+T++ L D+E   K+ELL +HSEK+A+ F 
Sbjct: 796 AGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF- 854

Query: 542 LMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++     +PIRIMKNLR+CGDCHS   + S+I GR+ ++RD NRFHHF +G CSC D+W
Sbjct: 855 VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 165/335 (49%), Gaps = 26/335 (7%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
           SC  E A    +  H + I  G   +   SN LIN Y + G +  A+K+FDEM  R +V+
Sbjct: 112 SCCSEEA----RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 167

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK---QLH 158
           W  +I  YT NG+  EA A F +M+R G  P + +   S L AC  +     CK   Q+H
Sbjct: 168 WACLISGYTQNGKPDEACARFRDMVRAGFIP-NHYAFGSALRAC-QESGPSGCKLGVQIH 225

Query: 159 VFALKAAMDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
               K     +V V   L+ +Y  C    +DA  VF+ +  RN ++W+S+++ + +    
Sbjct: 226 GLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDA 285

Query: 218 EEALILFRRAQVLGLEY-----NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
             A  LF   Q  GL +     + F+  SV+          +G++VHA + +TG   N  
Sbjct: 286 VSAYDLFSSMQKEGLGFSFKPNDAFSEFSVL-----EEGRRKGREVHAHVIRTGLNDNKV 340

Query: 273 A-ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           A  + LV+MYAK G + DA  VF  + EK+ V WN++ISG  ++  S +   +F  M + 
Sbjct: 341 AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEY 400

Query: 332 GLHPNEQTYISVLSACSHI-GMVEKGKSYFDLMVK 365
               ++ ++ SV+ A S     V +   YF  M++
Sbjct: 401 ----DQVSWNSVIGALSDSEASVSQAVKYFLQMMR 431



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA      RG   HA  I   L +D +  + L++ YSKCG I  A + F+ M
Sbjct: 542 TFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELM 601

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R + SWN++I  Y  +G  ++A+ LF  M+ +G+ P    T   VL AC+    V E 
Sbjct: 602 PLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPP-DHVTFVGVLSACSHVGFVEEG 660

Query: 155 -KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVA 209
            +     +    +   V   + ++D+  + G + +      SMP + N + W +++ 
Sbjct: 661 FEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLG 717



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T  S+I    G     + +++H    K GF  N+F +++L+++Y + G +  A  +F  +
Sbjct: 101 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 160

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             +N+V W  +ISG++++ +  E    F  M +AG  PN   + S L AC      E G 
Sbjct: 161 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQ-----ESGP 215

Query: 358 SYFDLMVKQHNVL 370
           S   L V+ H ++
Sbjct: 216 SGCKLGVQIHGLI 228


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/553 (39%), Positives = 326/553 (58%), Gaps = 18/553 (3%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
             +D   S  LI  Y+  G +  AR+VFDE P + I  WN ++ +        EA+A   
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163

Query: 124 NMLREGKTPYSEFTVSSVLCACAA-----KRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           +M R G  P   ++ +  L AC A            +++H  A++     +  V T L+D
Sbjct: 164 DMGRLG-VPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLID 222

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR--AQVLGLEYNQ 236
            YAK G++  A  VF +MPERN V+WS+M+  + +NE   +A+ LF+   A    L  N 
Sbjct: 223 CYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNS 282

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            TI SV+ ACAG+ AL  GK +HA + + GF S +   ++L+ MY +CGC+     +F  
Sbjct: 283 ITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKW 342

Query: 297 I-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           I   ++VV WN++ISG+  H    E + +FE+M   G  P+  T+ISVL ACSH G+V +
Sbjct: 343 IGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNE 402

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GK  F+ MV ++ V P   HY+CM+D+LGRAG + EA +LI +M  + +  +WG+LL +C
Sbjct: 403 GKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGAC 461

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R + ++E AEIA   LF +EP NAGN++LL++IYA  +   +V   ++L+ +  ++K   
Sbjct: 462 RIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTG 521

Query: 476 KSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            SW+E+K K          +P + ++ + + + V +MK  GY P+T   L+D+E   K+ 
Sbjct: 522 CSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKER 581

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           +LI HSEKLA+ FGL+  C G  IRI KNLR+C DCHS  KF S+   RE +VRD+NRFH
Sbjct: 582 ILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRFH 641

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 642 HFRDGVCSCGDYW 654



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 145/318 (45%), Gaps = 28/318 (8%)

Query: 48  APVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107
           AP    + H  + G+G    TLT         +C  +S +             + N +I 
Sbjct: 5   APTSLHLSHQAVFGVGAKRQTLT---------RCRPLSSSPGAAQP------ANANHLIQ 49

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH-VFALKAAM 166
           +   NGR   A AL       G    ++ T  S+L A A  RD      +H         
Sbjct: 50  TLCANGRLARAAALL-----PGLPAPTQRTYESLLLAAARARDAALAAAVHRRLEADPVF 104

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
             + F+ T L++ YA  G +  A +VF+  P +N   W++++      +  +EAL     
Sbjct: 105 RSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLAD 164

Query: 227 AQVLGLEYNQFTISSVICACAGLA-----ALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
              LG+  + ++ +  + AC  ++     A  + ++VHA   + G+  +   A++L+D Y
Sbjct: 165 MGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCY 224

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNEQT 339
           AK G V  A  VF+ + E+NVV W+ MI  ++++ R  + + LF+ M    A L PN  T
Sbjct: 225 AKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSIT 284

Query: 340 YISVLSACSHIGMVEKGK 357
            +SVL+AC+ +  +  GK
Sbjct: 285 IVSVLNACAGVNALSHGK 302


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 331/535 (61%), Gaps = 9/535 (1%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L++ Y+KCG I  AR  F+ +P   ++  + +I  Y  + + ++A  LF+ ++R    P 
Sbjct: 285 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP- 343

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           +E+++SSVL AC     +   KQ+H  A+K   + ++FVG AL+D YAKC  +  + ++F
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 403

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
            S+ + NEV+W+++V GF Q+ L EEAL +F   Q   +   Q T SSV+ ACA  A++ 
Sbjct: 404 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 463

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
              Q+H  + K+ F ++    +SL+D YAKCG + DA  VF  + E++++ WN +ISG++
Sbjct: 464 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 523

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            H ++ + + LF++M ++ +  N+ T++++LS C   G+V  G S FD M   H + P++
Sbjct: 524 LHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSM 583

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY+C++ +LGRAG +++A   I ++P   +A +W +LL+SC  ++N+ L   +A+++  
Sbjct: 584 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 643

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------R 485
           +EP +   ++LLSN+YAA    ++VA  RK +R+  V+K    SWVEIKG+         
Sbjct: 644 IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSV 703

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
           +HP +  I + LE L  +  + GY P+    LHDV+  +K  +L  HSE+LAL +GL+  
Sbjct: 704 DHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMT 763

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG PIRI+KNLR C DCH+     S+I  RE IVRD+NRFHHF +G CSC D+W
Sbjct: 764 PPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 169/329 (51%), Gaps = 24/329 (7%)

Query: 40  LQSCARERAPVRGKVCHAKII---GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           LQ C        G+  H  ++   G+G   D   +N+L+N Y K G ++ AR++FD MP+
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVG-RLDLFCANVLLNMYGKLGPLASARRLFDRMPE 124

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           R +VS+ T++ ++   G  + A ALF  +  EG    ++F ++++L    A         
Sbjct: 125 RNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE-VNQFVLTTMLKLAIAMDAAGLAGG 183

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H  A K   D N FVG+ L+D Y+ C L+SDA  VF  +  ++ V W++MV+ + +N+ 
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            E A   FR AQ                +C+ LA     + +H    KT   +      +
Sbjct: 244 PENA---FRCAQ----------------SCSLLAISCARQGIHGCAIKTLNDTEPHVGGA 284

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+DMYAKCG + DA   F  I   +V+L + MIS +++  ++ +   LF ++ ++ + PN
Sbjct: 285 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 344

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           E +  SVL AC+++  ++ GK   +  +K
Sbjct: 345 EYSLSSVLQACTNMVQLDFGKQIHNHAIK 373



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 167/346 (48%), Gaps = 18/346 (5%)

Query: 15  SFSSSAIASASANANATEL-------------STLQATLQSCARERAPVRGKVCHAKIIG 61
           SF  S  A ++ N  A EL              +L + LQ+C        GK  H   I 
Sbjct: 314 SFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIK 373

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           +G  +D    N L++FY+KC  +  + K+F  +     VSWNTI+  ++ +G  +EA+++
Sbjct: 374 IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSV 433

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M +  + P ++ T SSVL ACA+   +    Q+H    K+  + +  +G +L+D YA
Sbjct: 434 FCEM-QAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYA 492

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KCG I DA +VF+ + ER+ ++W+++++G+  +    +AL LF R     +E N  T  +
Sbjct: 493 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 552

Query: 242 VICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEE 299
           ++  C     +  G  +  ++    G   +M   + +V +  + G + DA  F+      
Sbjct: 553 LLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA 612

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            + ++W  ++S    H          EK+ +  + P ++T   +LS
Sbjct: 613 PSAMVWRALLSSCIIHKNVALGRFSAEKILE--IEPQDETTYVLLS 656



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 2/182 (1%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALK-AAMDR-NVFVGTALLDVYAKCGLISDASRVF 193
           F  +  L  C A+ D    + +H   ++   + R ++F    LL++Y K G ++ A R+F
Sbjct: 60  FACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLF 119

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + MPERN V++ ++V    Q   +E A  LFRR +  G E NQF +++++     + A  
Sbjct: 120 DRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAG 179

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
               VH+   K G   N F  S L+D Y+ C  V DA  VF+GI  K+ V+W  M+S +S
Sbjct: 180 LAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS 239

Query: 314 RH 315
            +
Sbjct: 240 EN 241


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 320/543 (58%), Gaps = 9/543 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D    N +I  Y   G +    ++F EMP R ++SW ++IG    +GR +EA+ LF  M+
Sbjct: 118 DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMM 177

Query: 127 REG-KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
             G +   +  T   V+ ACA    +++  Q+H    K     + ++  AL+  YA C  
Sbjct: 178 GCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQ 237

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + D+ RVF      N V W+++V G+  N  +E+AL +F      G+  NQ + +S + +
Sbjct: 238 MEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNS 297

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C GL AL  G+++H    K G  +++F  +SL+ MY +CG + D   +F  I +KN+V W
Sbjct: 298 CCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSW 357

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N++I G ++H   +  +  F +M ++ + P+E T+  +LSACSH GM +KG+  F    +
Sbjct: 358 NSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSE 417

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
             +    + HY+CM+DILGR+G + EA +LI NMP  A + +W  LL++C  +  LE+AE
Sbjct: 418 NKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAE 477

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR 485
            AAK +  +EP  +  ++LLSN+YA+  RW +V+R R+ ++   + K+  +SW+ IKG R
Sbjct: 478 RAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWR 537

Query: 486 N--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
           N        HP    IY KLE L  ++K+LGY P+    LHDVED +K+ +L +HSE+LA
Sbjct: 538 NEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLA 597

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+    G  I +MKNLR+CGDCHS +K  ++I  R+ IVRD  RFHHF +G CSC 
Sbjct: 598 IGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCG 657

Query: 598 DFW 600
           D+W
Sbjct: 658 DYW 660



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 170/351 (48%), Gaps = 44/351 (12%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I     C  ++ ARK+FDEMP+R +VSW T+I  +   G+ + A  LF  M 
Sbjct: 56  DVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKM- 114

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                P+                                  R++    +++  Y   G +
Sbjct: 115 -----PF----------------------------------RDIAAWNSMIYGYCCNGRV 135

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY--NQFTISSVIC 244
            D  R+F+ MP RN ++W+SM+ G  Q+   EEAL LFR+    G+E      T   VI 
Sbjct: 136 EDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVIT 195

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           ACA  +AL QG Q+HA + K G+  + + +++L+  YA C  + D+  VF G    NVV+
Sbjct: 196 ACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVI 255

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W  +++G+  + +  + + +F +M + G+ PN+ ++ S L++C  +  ++ G+      V
Sbjct: 256 WTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAV 315

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           K   +  +VF  + +I +  R G +++   +   +      S W S++  C
Sbjct: 316 KL-GLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVS-WNSVIVGC 364



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 144/295 (48%), Gaps = 21/295 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    + +CA   A  +G   HA +  +G + D   S  LI FY+ C  +  + +VF  
Sbjct: 188 STYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG 247

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                +V W  ++  Y  N + ++A+ +F  M+REG  P ++ + +S L +C     +  
Sbjct: 248 KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLP-NQSSFTSALNSCCGLEALDW 306

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H  A+K  ++ +VFVG +L+ +Y +CG ++D   +F+ + ++N V+W+S++ G  Q
Sbjct: 307 GREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQ 366

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +     AL  F +     +E ++ T + ++ AC+      +G+      C   + S   +
Sbjct: 367 HGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGR------CLFKYFSENKS 420

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEE-----------KNVVLWNTMISGFSRHAR 317
           A   +D YA   C+VD       +EE            N ++W  ++S  + H++
Sbjct: 421 AEVKLDHYA---CMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSK 472



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 88/204 (43%), Gaps = 41/204 (20%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I +A  VF+ +   +   ++ M+ G+ +N  ++ AL LF    V     +  + +S+I  
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV----KDVVSWNSMIKG 66

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C   A L   +++   + +     ++ + +++++ + + G +  A  +F  +  +++  W
Sbjct: 67  CFDCADLTMARKLFDEMPE----RSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAW 122

Query: 306 NTMISGF-------------------------------SRHARSVEVMILFEKMQQAGLH 334
           N+MI G+                                +H RS E + LF +M   G+ 
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 335 --PNEQTYISVLSACSHIGMVEKG 356
             P   TY  V++AC++   + +G
Sbjct: 183 VKPTSSTYCCVITACANASALYQG 206


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 332/574 (57%), Gaps = 12/574 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
             L +C+       G  CH  +   GL       + L++ YS+C  +  A +V D +P  
Sbjct: 122 TALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGE 181

Query: 98  C---IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               I S+N+++ +   +GR +EAV +   M+ E    +   T   V+  CA  RD+   
Sbjct: 182 HVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDEC-VAWDHVTYVGVMGLCAQIRDLQLG 240

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            ++H   L+  +  + FVG+ L+D+Y KCG + +A  VF+ +  RN V W++++  ++QN
Sbjct: 241 LRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQN 300

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             +EE+L LF      G   N++T + ++ ACAG+AAL  G  +HA + K GF +++   
Sbjct: 301 GYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVR 360

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+K G +  +Y VF+ +  ++++ WN MI G+S H    + + +F+ M  A   
Sbjct: 361 NALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEEC 420

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T+I VLSA SH+G+V++G  Y + +++   + P + HY+CM+ +L RAGL+ EA +
Sbjct: 421 PNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAEN 480

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            +           W +LL +C  +RN +L    A+ +  M+P + G + LLSN+YA  RR
Sbjct: 481 FMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARR 540

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ V   RKL+R+  +KKE   SW++I+           NHP   +IY K+++L+  +K 
Sbjct: 541 WDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKP 600

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY P     LHDVED +K+  L +HSEKLAL +GLM +    PIRI+KNLR+C DCH+ 
Sbjct: 601 LGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTA 660

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S++  R  IVRD NRFHHF +GSC+C D W
Sbjct: 661 VKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 198/380 (52%), Gaps = 16/380 (4%)

Query: 43  CARERAPVRGKVCHAK-IIGMGLNNDTLTS--NILINFYSKCGLISGARKVFDEMPQRCI 99
           CA  +    GK  HA+ +I    +N +  S  N L++ Y KCG +  AR +FD MP R +
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNV 81

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWN ++  Y   G   E + LF NM+       +E+  ++ L AC+    V E  Q H 
Sbjct: 82  VSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHG 141

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER--NEV-TWSSMVAGFVQNEL 216
              K  +  + +V +AL+ +Y++C  +  A +V +++P    N++ +++S++   V++  
Sbjct: 142 LLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGR 201

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            EEA+ + RR     + ++  T   V+  CA +  L  G +VHA L + G   + F  S 
Sbjct: 202 GEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSM 261

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+DMY KCG V++A  VF G++ +NVV+W  +++ + ++    E + LF  M + G  PN
Sbjct: 262 LIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPN 321

Query: 337 EQTYISVLSACSHIGMVEKGKSYF----DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           E T+  +L+AC+ I  +  G         L  K H ++ N      +I++  ++G I  +
Sbjct: 322 EYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNA-----LINMYSKSGSIDSS 376

Query: 393 YDLILNMPFDATASMWGSLL 412
           Y++  +M +    + W +++
Sbjct: 377 YNVFTDMIYRDIIT-WNAMI 395



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA   A   G + HA++  +G  N  +  N LIN YSK G I  +  VF +M
Sbjct: 324 TFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDM 383

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
             R I++WN +I  Y+ +G  ++A+ +F +M+   + P
Sbjct: 384 IYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECP 421


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/575 (36%), Positives = 334/575 (58%), Gaps = 10/575 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L +C       +G++ H  ++  GL ++ +  N L++ Y K G +S +R+V  +M
Sbjct: 465  TFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQM 524

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
            P+R +V+WN +IG Y  N    +A+A F  +  EG +  +  TV SVL AC    D+ E 
Sbjct: 525  PRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSA-NYITVVSVLSACLVPGDLLER 583

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             K LH + + A  + +  V  +L+ +YAKCG +S +  +F  +  R+ +TW++++A    
Sbjct: 584  GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAH 643

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +   EE L L  + +  GL  +QF+ S  + A A LA L +G+Q+H +  K GF  + F 
Sbjct: 644  HGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFI 703

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             ++  DMY+KCG + +   +      +++  WN +IS   RH    EV   F +M + G+
Sbjct: 704  FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGI 763

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P   T++S+L+ACSH G+V++G +Y+D++ K   + P + H  C+ID+LGR+G + EA 
Sbjct: 764  KPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAE 823

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
              I  MP      +W SLLASC+ +R+L+    AA+ L  +EP++    +L SN++A   
Sbjct: 824  TFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTG 883

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            RWE+V   RK +    +KK+++ SWV++K        G R HP+  EIY+KLE + + +K
Sbjct: 884  RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 943

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            + GY  +T   L D ++ +K+  L +HSE+LAL + LM    G  +RI KNLRIC DCHS
Sbjct: 944  ESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHS 1003

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              KF SR+ GR  ++RD  RFHHF +G CSC D+W
Sbjct: 1004 VYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 190/371 (51%), Gaps = 12/371 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA  +   +    L +N LIN Y+K G +  AR +FD+MP R  VSWNT++     
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF-ECKQLHVFALKAAMDRNV 170
            G   E +  F  M   G  P S F ++S++ AC     +F E  Q+H F  K+ +  +V
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKP-SSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 195

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           +V TA+L +Y   GL+S + +VFE MP+RN V+W+S++ G+      EE + +++  +  
Sbjct: 196 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGE 255

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+E N+ ++S VI +C  L     G+Q+   + K+G  S +   +SL+ M+   G V  A
Sbjct: 256 GVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYA 315

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            ++F+ I E++ + WN++++ ++++    E   +F  M++     N  T  ++LS    +
Sbjct: 316 NYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDV 375

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGLIHEAYDLILNMPFDATAS 406
              + G+    L+VK            C+ + L R    AG   EA  +   MP     S
Sbjct: 376 DHQKWGRGIHGLVVKM-----GFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLIS 430

Query: 407 MWGSLLASCRN 417
            W SL+AS  N
Sbjct: 431 -WNSLMASFVN 440



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 215/419 (51%), Gaps = 8/419 (1%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            + + + +C R  +  R G   H  +   GL +D   S  +++ Y   GL+S +RKVF+E
Sbjct: 161 VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 220

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R +VSW +++  Y+  G  +E + ++ +M  EG    +E ++S V+ +C   +D   
Sbjct: 221 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEG-VECNENSMSLVISSCGLLKDESL 279

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+    +K+ ++  + V  +L+ ++   G +  A+ +F  + ER+ ++W+S+VA + Q
Sbjct: 280 GRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQ 339

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   EE+  +F   +    E N  T+S+++     +     G+ +H ++ K GF S +  
Sbjct: 340 NGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCV 399

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYA  G   +A  VF  +  K+++ WN++++ F    RS++ + +   M + G 
Sbjct: 400 CNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGK 459

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             N  T+ S L+AC      +KG+    L+V    +  N    + ++ + G+ G +  + 
Sbjct: 460 SVNYVTFTSALAACFSPEFFDKGRILHGLVVVS-GLFDNQIIGNALVSMYGKIGGMSTSR 518

Query: 394 DLILNMP-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
            ++L MP  D  A  W +L+       + + A +AA Q   +E  +A N++ + ++ +A
Sbjct: 519 RVLLQMPRRDVVA--WNALIGGYAENEDPDKA-LAAFQTLRVEGVSA-NYITVVSVLSA 573



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 195/408 (47%), Gaps = 6/408 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +++   + SC   +    G+    ++I  GL +     N LI+ +   G +  A  +F++
Sbjct: 262 NSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQ 321

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + +R  +SWN+I+ +Y  NG  +E+  +F N++R      +  TVS++L           
Sbjct: 322 ISERDTISWNSIVAAYAQNGHIEESSRIF-NLMRRFHDEVNSTTVSTLLSVLGDVDHQKW 380

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H   +K   D  V V   LL +YA  G   +A  VF+ MP ++ ++W+S++A FV 
Sbjct: 381 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVN 440

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    +AL +       G   N  T +S + AC       +G+ +H ++  +G   N   
Sbjct: 441 DGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQII 500

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV MY K G +  +  V   +  ++VV WN +I G++ +    + +  F+ ++  G+
Sbjct: 501 GNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGV 560

Query: 334 HPNEQTYISVLSACSHIG-MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             N  T +SVLSAC   G ++E+GK     +V       +    + +I +  + G +  +
Sbjct: 561 SANYITVVSVLSACLVPGDLLERGKPLHAYIVSA-GFESDEHVKNSLITMYAKCGDLSSS 619

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLE--LAEIAAKQLFGMEPDN 438
            DL  N   + +   W ++LA+  ++ + E  L  ++  + FG+  D 
Sbjct: 620 QDL-FNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQ 666


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/608 (36%), Positives = 339/608 (55%), Gaps = 44/608 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T    L+SCA+ +A   G+  H  ++ +G + D      LI+ Y + G +  ARKVFD  
Sbjct: 136 TFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRS 195

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        E+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 196 PHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ +V+ ACA    +   +Q+H +        N+ +  +L+D+Y+KC
Sbjct: 256 EMMKTNIRP-DESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKC 314

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +FE +  ++ ++W++++ G+    LY+EAL+LF+     G   N  T+ S++
Sbjct: 315 GELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSIL 374

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAAS---SLVDMYAKCGCVVDAYFVFSGIEEK 300
            ACA L A+  G+ +H  + K    S   A+S   SL+DMYAKCG +  A+ VF+ I  K
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKR-LKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 433

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++  WN MI GF+ H R+     +F +M++ G+ P++ T++ +LSACS  GM++ G+  F
Sbjct: 434 SLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIF 493

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             M + + + P + HY CMID+LG +GL  EA ++I NM  +    +W SLL +C+   N
Sbjct: 494 RTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGN 553

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           +EL E  A+ L  +EP+N G ++LLSNIYA   RW EVA+ R L+ D  +KK    S +E
Sbjct: 554 VELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIE 613

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           I         G + HPR  EIY  LE++   ++K G+ P+T   L ++E+  K+  L HH
Sbjct: 614 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHH 673

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G
Sbjct: 674 SEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDG 733

Query: 593 SCSCWDFW 600
            CSC D+W
Sbjct: 734 VCSCNDYW 741



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 232/469 (49%), Gaps = 54/469 (11%)

Query: 11  FYYKSFSSSAIASASANANATELSTLQ--ATLQSCARERAPVRGKVCHAKIIGMGLNNDT 68
           + +    SS+     +  N   LS L    TLQS          ++ HA++I  GL+N  
Sbjct: 15  YPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSL---------RLIHAQMIKTGLHNTN 65

Query: 69  LTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
              + L+          G   A  VF+ + +  ++ WNT+   +  +     A+ L++ M
Sbjct: 66  YALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCM 125

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           +  G  P S +T   +L +CA  +   E +Q+H   LK   D ++FV T+L+ VY + G 
Sbjct: 126 ISLGLLPNS-YTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGR 184

Query: 186 ISDASRVFESMPER-------------------------------NEVTWSSMVAGFVQN 214
           + DA +VF+  P R                               + V+W++M++G+ + 
Sbjct: 185 LEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAET 244

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             Y+EAL LF+      +  ++ T+ +V+ ACA   ++  G+QVH+ +   GFGSN+   
Sbjct: 245 GNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIV 304

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+D+Y+KCG +  A  +F G+  K+V+ WNT+I G++      E ++LF++M ++G  
Sbjct: 305 NSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGER 364

Query: 335 PNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           PN+ T +S+L AC+H+G ++ G+    Y D  +K      ++   + +ID+  + G I  
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSL--RTSLIDMYAKCGDIEA 422

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELA-EIAAK-QLFGMEPDN 438
           A+  + N     + S W +++     +   + A +I ++ +  G+EPD+
Sbjct: 423 AHQ-VFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDD 470


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/565 (37%), Positives = 342/565 (60%), Gaps = 19/565 (3%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G++ HA  +  GL+ D +  N L++ Y++CG    AR +F+ +P    VSWNT+I   + 
Sbjct: 342 GRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNA-VSWNTMIAGSSQ 400

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK----RDVFECKQLHVFALKAAMD 167
            G+ + A+ LF  M  EG  P    T  ++L A A+     R + E ++LH   +     
Sbjct: 401 KGQMKRALELFQRMQLEGMAPV-RATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYA 459

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFE--SMPERNEV-TWSSMVAGFVQNELYEEALILF 224
               +GTA++ +YA CG I +A+  F+  +M +R++V +W+++++   Q+   + AL  F
Sbjct: 460 SEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFF 519

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           RR  + G+  NQ T  +V+ ACAG AAL +G  VH  L  +G  SN+F A++L  MY +C
Sbjct: 520 RRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRC 579

Query: 285 GCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           G +  A  +F  +  E++VV++N MI+ +S++  + E + LF +MQQ G  P+EQ+++SV
Sbjct: 580 GSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSV 639

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           LSACSH G+ ++G   F  M + + + P+  HY+C +D+LGRAG + +A +LI  M    
Sbjct: 640 LSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKP 699

Query: 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463
           T  +W +LL +CR YR+++   +A   +  ++P +   +++LSNI A   +W+E A  R 
Sbjct: 700 TVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRT 759

Query: 464 LIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEH 515
            +    ++K+  KSW+EIK        G R+HPR  EIY +LE+L  E++++GY P+T  
Sbjct: 760 EMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRL 819

Query: 516 DLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
            L  V+++ K+ LL  HSE+LA+  G+M       +R+MKNLR+C DCH+  KF S+I  
Sbjct: 820 VLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVN 878

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           +E +VRD +RFHHF +GSCSC D+W
Sbjct: 879 KEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 222/452 (49%), Gaps = 35/452 (7%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           S+++ AT  + L   L++   +R   +G+  HA+I+ +GL  +    N L+  Y KC  +
Sbjct: 21  SSSSGATRPAHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESL 78

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
               +VF  +  R   SW TII +YT +G+ + A+ +F  M +EG       T  +VL A
Sbjct: 79  GDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEG-VRCDAVTFLAVLKA 137

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           CA   D+ + + +H + +++ ++    +   LL +Y  CG ++ A  +FE M ER+ V+W
Sbjct: 138 CARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSW 196

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           ++ +A   Q+   + AL LF+R Q+ G+   + T+   +  CA +    Q + +H+++ +
Sbjct: 197 NAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIR---QARAIHSIVRE 253

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           +G    +  +++L   YA+ G +  A  VF    E++VV WN M+  +++H    E  +L
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 325 FEKMQQAGLHPNEQTYISVLSACS--------HIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           F +M   G+ P++ T ++  + CS        H   +EKG       + +  VL N    
Sbjct: 314 FARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKG-------LDRDIVLGNA--- 363

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN----YRNLELAEIAAKQLF 432
             ++D+  R G   EA  L   +P +A +  W +++A         R LEL +    QL 
Sbjct: 364 --LLDMYTRCGSPEEARHLFEGIPGNAVS--WNTMIAGSSQKGQMKRALELFQ--RMQLE 417

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
           GM P  A    LL  + +       +A  RKL
Sbjct: 418 GMAPVRATYLNLLEAVASNPEEARAMAEGRKL 449



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 159/326 (48%), Gaps = 9/326 (2%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A   AT L+ L+A   +    RA   G+  H++I+  G  ++      ++  Y+ CG I 
Sbjct: 420 APVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAID 479

Query: 86  GARKVFDE--MPQR-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            A   F    M  R  +VSWN II S + +G  + A+  F  M   G  P ++ T  +VL
Sbjct: 480 EAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAP-NQITCVAVL 538

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNE 201
            ACA    + E   +H     + M+ NVFV TAL  +Y +CG +  A  +FE +  ER+ 
Sbjct: 539 DACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDV 598

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V +++M+A + QN L  EAL LF R Q  G   ++ +  SV+ AC+      +G ++   
Sbjct: 599 VIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRS 658

Query: 262 LCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL-WNTMISGFSRHARSV 319
           + ++ G   +    +  VD+  + G + DA  +   ++ K  VL W T++ G  R  R V
Sbjct: 659 MRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLL-GACRKYRDV 717

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLS 345
           +   L   M +  L P +++   VLS
Sbjct: 718 DRGRLANSMVRE-LDPGDESAYVVLS 742


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 347/578 (60%), Gaps = 23/578 (3%)

Query: 40   LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            L SCA       G+  H   +  GL  DT  SN L+  Y +CG +S   ++F+ M    +
Sbjct: 491  LSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDV 550

Query: 100  VSWNTIIGSY-TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
            VSWN+I+G   ++     E+V +F NM++ G  P ++ T  + L A      +   KQ+H
Sbjct: 551  VSWNSIMGVMASSQAPITESVQVFSNMMKSGLVP-NKVTFVNFLAALTPLSVLELGKQIH 609

Query: 159  VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQNELY 217
               LK  +  +  V  AL+  YAK G +    R+F  M   R+ ++W+SM++G++ N   
Sbjct: 610  SVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHL 669

Query: 218  EEAL----ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +EA+    ++    Q++    +  T S V+ ACA +AAL +G ++HA   ++   S++  
Sbjct: 670  QEAMDCVCLMMHSEQMM----DHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVV 725

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             S+LVDMY+KCG +  A  VF  + +KN   WN+MISG++RH    + + +FE+MQ++G 
Sbjct: 726  ESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGE 785

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P+  T++SVLSACSH G+VE+G  YF+LM + + +LP + HYSC+ID+LGRAG + +  
Sbjct: 786  SPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGELDKIQ 844

Query: 394  DLILNMPFDATASMWGSLLASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
            + +  MP      +W ++L +C+  ++   ++L   A++ L  +EP N  N++L S  +A
Sbjct: 845  EYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHA 904

Query: 451  ANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVE 502
            A  RWE+ A+AR  ++ + VKKE  +SWV         I G R+HP   EIY KL  L++
Sbjct: 905  AIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQ 964

Query: 503  EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            +++  GY P TE+ LHD+E+  K+ELL +HSEKLA+ F L     G PIRIMKNLR+CGD
Sbjct: 965  KIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGD 1024

Query: 563  CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            CH+  ++ S+I GR+ I+RD  RFHHF +G CSC D+W
Sbjct: 1025 CHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 182/360 (50%), Gaps = 5/360 (1%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           +++  G ++D    + L++ +++ G++  A+ ++  + +R  V+ N +I         + 
Sbjct: 303 RVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEA 362

Query: 118 AVALFINMLREGKTPYSEFTV--SSVLCACAAKRDVFECKQLHVFALKAA-MDRNVFVGT 174
           A  +F+            + V  S++     A++ + + +++H   L+A  + R + V  
Sbjct: 363 AAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSN 422

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
            L+++YAKCG I  A RVF+ M  R+ ++W++++    QN   E A++ +   +   +  
Sbjct: 423 GLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGP 482

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           + F   S + +CAGL  L  G+Q+H    K G   +   +++LV MY +CG + + + +F
Sbjct: 483 SNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIF 542

Query: 295 SGIEEKNVVLWNTMISGF-SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           + +   +VV WN+++    S  A   E + +F  M ++GL PN+ T+++ L+A + + ++
Sbjct: 543 NSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVL 602

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           E GK    +M+K H V  +    + ++    ++G +     L   M     A  W S+++
Sbjct: 603 ELGKQIHSVMLK-HGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMIS 661



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 17/314 (5%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H +++  GL +D   +N L+N Y+K   +  AR+VFD MP R  VSW  +I  +  +G  
Sbjct: 88  HLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLP 147

Query: 116 QEAVALFINMLREGKT--PYSEFTVSSVLCAC---AAKRDVFECKQLHVFALKAAMDRNV 170
           ++A  LF  MLREG    P S FT  SVL AC      R  F   Q+H    K     N 
Sbjct: 148 EDAFPLFRAMLREGPGCRPTS-FTFGSVLRACQDSGPDRLGFAV-QVHGLVSKTEFTSNT 205

Query: 171 FVGTALLDVYAKCGLISD--ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
            V  AL+ +Y  C +     A RVF++ P R+ +TW+++++ + +         LFR  Q
Sbjct: 206 TVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQ 265

Query: 229 V----LGLEYNQFTISSVICACAGLAALIQG--KQVHAVLCKTGFGSNMFAASSLVDMYA 282
                + L   + T  S+I A   L++   G   Q+   + K+G  S+++  S+LV  +A
Sbjct: 266 YDDSGIELRPTEHTFGSLITATY-LSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFA 324

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           + G + +A  ++ G++E+N V  N +I+G  +         +F   + +    N  TY+ 
Sbjct: 325 RHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAA-VNVDTYVV 383

Query: 343 VLSACSHIGMVEKG 356
           +LSA +     E+G
Sbjct: 384 LLSAIAEFSTAEQG 397



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 20/260 (7%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + LH+  +K  +  ++F+   L++ YAK   +  A RVF+ MP RN V+W+ +++G V +
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 215 ELYEEALILFRRA--QVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSN 270
            L E+A  LFR    +  G     FT  SV+ AC  +G   L    QVH ++ KT F SN
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 271 MFAASSLVDMYAKC--GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
               ++L+ MY  C  G  + A  VF     ++++ WN ++S +++   ++    LF  M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 329 Q--QAG--LHPNEQTYISV-----LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           Q   +G  L P E T+ S+     LS+CS +G++++      + V +     +++  S +
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCS-LGLLDQ----LFVRVLKSGCSSDLYVGSAL 319

Query: 380 IDILGRAGLIHEAYDLILNM 399
           +    R G++ EA D+ L +
Sbjct: 320 VSAFARHGMLDEAKDIYLGL 339



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA   A  RG   HA  +   L +D +  + L++ YSKCG I  A KVF  M
Sbjct: 690 TFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSM 749

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA----AKRD 150
            Q+   SWN++I  Y  +G  ++A+ +F  M   G++P    T  SVL AC+     +R 
Sbjct: 750 SQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESP-DHVTFVSVLSACSHAGLVERG 808

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVA 209
           +   + +  + +   ++      + ++D+  + G +       + MP + N + W +++ 
Sbjct: 809 LDYFELMEDYGILPRIEHY----SCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLV 864

Query: 210 GFVQNE 215
              Q++
Sbjct: 865 ACQQSK 870


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 348/578 (60%), Gaps = 11/578 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L  + + + + AR    + G   HA  +  GL++D    N L++ Y+K   +     +F
Sbjct: 418 DLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIF 477

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP + +VSW TII  +  NG    A+ LF  +  EG        +SS+L AC+  + +
Sbjct: 478 DKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEG-IDLDVMMISSILLACSGLKLI 536

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++H + ++  +  ++ +   ++DVY +CG +  A+R+FE +  ++ V+W+SM++ +
Sbjct: 537 SSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY 595

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V N L  EAL LF   +  G+E +  ++ S++ A A L+AL +GK++H  L + GF    
Sbjct: 596 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 655

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             AS+LVDMYA+CG +  +  VF+ I  K++VLW +MI+ +  H      + LF +M+  
Sbjct: 656 SLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDE 715

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            + P+   +++VL ACSH G++ +G+ + + M  ++ + P   HY C++D+LGRA  + E
Sbjct: 716 SIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEE 775

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY  +  M  + TA +W +LL +C+ + N EL EIAA++L  M+P+N GN++L+SN+YAA
Sbjct: 776 AYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAA 835

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
            RRW++V   R  ++ S +KK    SW+E+  K        ++HP+  EIYSKL ++ E+
Sbjct: 836 ERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEK 895

Query: 504 M-KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           + K+ GY  +T+  LH+ ++  K ++L  HSE+LA+ +G++    G  +RI KNLR+CGD
Sbjct: 896 LAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGD 955

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+F K  S+   RE ++RD NRFHHF  G CSC D W
Sbjct: 956 CHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 214/408 (52%), Gaps = 9/408 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C   +    G   H   I  G  +    +N ++  Y+KC  ++GAR++FD M
Sbjct: 218 TFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 277

Query: 95  PQR-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P++  +VSWN++I +Y++NG+  EA+ LF  M +    P + +T  + L AC     + +
Sbjct: 278 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAP-NTYTFVAALQACEDSSFIKQ 336

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H   LK++   NVFV  AL+ +YA+ G + +A+ +F +M + + ++W+SM++GFVQ
Sbjct: 337 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 396

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N LY EAL  +   +  G + +   + S+I A A     + G Q+HA   K G  S++  
Sbjct: 397 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQV 456

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +SLVDMYAK   +     +F  + +K+VV W T+I+G +++      + LF ++Q  G+
Sbjct: 457 GNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGI 516

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             +     S+L ACS + ++   K     ++++   L ++   + ++D+ G  G +  A 
Sbjct: 517 DLDVMMISSILLACSGLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAA 574

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF---GMEPDN 438
            +   + F    S W S++ SC  +  L    +    L    G+EPD+
Sbjct: 575 RMFELIEFKDVVS-WTSMI-SCYVHNGLANEALELFHLMKETGVEPDS 620



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 179/336 (53%), Gaps = 6/336 (1%)

Query: 26  ANANATELSTLQA---TLQSCARERAPVRGKVCHAKII-GMGLNNDTLTSNILINFYSKC 81
           AN + ++ S  +A    L+ C  ++A   G+  HA +I    L N    S  L+  Y KC
Sbjct: 104 ANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKC 163

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G +  A K+FD MP + I +WN +IG+Y TNG    ++ L+  M R    P    T   +
Sbjct: 164 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCI 222

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L AC   +D     ++H  A+K      VFV  +++ +Y KC  ++ A ++F+ MPE+ +
Sbjct: 223 LKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 282

Query: 202 -VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            V+W+SM++ +  N    EAL LF   Q   L  N +T  + + AC   + + QG  +HA
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 342

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
            + K+ +  N+F A++L+ MYA+ G + +A  +F  +++ + + WN+M+SGF ++    E
Sbjct: 343 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHE 402

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
            +  + +M+ AG  P+    IS+++A +  G    G
Sbjct: 403 ALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNG 438



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 170/310 (54%), Gaps = 14/310 (4%)

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTV----SSVLCACAAKRDVFECKQLHVFALKA- 164
           + N   Q    LF N     ++P S+F++    SSVL  C +K+ + E +Q+H   + + 
Sbjct: 91  SVNEAFQSLTDLFAN-----QSP-SQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSN 144

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
           A+  +VF+ T L+ +Y KCG + DA ++F+ MP +   TW++M+  +V N     +L L+
Sbjct: 145 ALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY 204

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           R  +V G+  +  T   ++ AC  L     G +VH +  K G+ S +F A+S+V MY KC
Sbjct: 205 REMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKC 264

Query: 285 GCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
             +  A  +F  + EK +VV WN+MIS +S + +S+E + LF +MQ+A L PN  T+++ 
Sbjct: 265 NDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAA 324

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           L AC     +++G  +    V + +   NVF  + +I +  R G + EA ++  NM  D 
Sbjct: 325 LQACEDSSFIKQGM-FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DW 382

Query: 404 TASMWGSLLA 413
               W S+L+
Sbjct: 383 DTISWNSMLS 392


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 319/514 (62%), Gaps = 9/514 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + ++ NIL   Y K G + GARK+FDEMP+R + +WN ++   T  G ++E++  F++M 
Sbjct: 106 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 165

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           REG  P  EF + SV   CA  RDV   +Q+H + +++ +DR++ VG++L  +Y +CG +
Sbjct: 166 REGMHP-DEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 224

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +   V   +P  + V+ ++++AG  QN   E AL  F   + +G+  +  T  S I +C
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 284

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + LAAL QG+Q+H  + K G    +   + LV MY++CGC+ D+  VF G    +  L +
Sbjct: 285 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 344

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MIS +  H    + + LF++M   G  P++ T++++L ACSH G+ E+G   F+LM K 
Sbjct: 345 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 404

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P+V HY+C++D+LGR+G + EA  LIL+MP      +W +LL++C+  +N ++AE 
Sbjct: 405 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 464

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
            AK++  ++P ++ +++LLSNI A +RRW +V+  RK +RD+ V+KE   SWVE+K    
Sbjct: 465 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 524

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G  +HPR  EI   LE+++ ++++ GY P+    LHD+ED  K+  L HHSEKLA+
Sbjct: 525 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 584

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASR 572
            F  + L  GVPIR+MKNLR+C DCH  +K  S+
Sbjct: 585 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQ 618



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 135/259 (52%), Gaps = 9/259 (3%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT + ++ A A   D+   ++L     +    RNV     L   Y K G +  A ++F+ 
Sbjct: 77  FTANHLMLAYADLGDLTAAREL----FERIPRRNVMSWNILFGGYIKNGDLGGARKLFDE 132

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MPERN  TW++MVAG       EE+L  F   +  G+  ++F + SV   CAGL  ++ G
Sbjct: 133 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 192

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +QVHA + ++G   +M   SSL  MY +CGC+ +   V   +   ++V  NT+I+G +++
Sbjct: 193 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 252

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNV 373
             S   +  F  M+  G+  +  T++S +S+CS +  + +G+     ++K     V+P +
Sbjct: 253 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 312

Query: 374 FHYSCMIDILGRAGLIHEA 392
              +C++ +  R G + ++
Sbjct: 313 ---TCLVHMYSRCGCLGDS 328



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 3/277 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L +  + CA  R  V G+  HA ++  GL+ D    + L + Y +CG +     V   +P
Sbjct: 176 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 235

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
              IVS NTII   T NG  + A+  F  M+R         T  S + +C+    + + +
Sbjct: 236 SLSIVSCNTIIAGRTQNGDSEGALEYFC-MMRSVGVAADVVTFVSAISSCSDLAALAQGQ 294

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   +KA +D+ V V T L+ +Y++CG + D+ RVF      +    S+M++ +  + 
Sbjct: 295 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHG 354

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAA 274
             ++A+ LF++    G E +  T  +++ AC+      +G     ++ KT G   ++   
Sbjct: 355 HGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHY 414

Query: 275 SSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMIS 310
           + +VD+  + GC+ +A   + S     + V+W T++S
Sbjct: 415 TCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLS 451



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A ++ T  + + SC+   A  +G+  H +++  G++        L++ YS+CG +  + +
Sbjct: 271 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--- 146
           VF           + +I +Y  +G  Q+A+ LF  M+  G  P S+ T  ++L AC+   
Sbjct: 331 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEP-SDVTFLALLYACSHSG 389

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            K +  +C +L        M  +V   T ++D+  + G + +A  +  SMP   + V W 
Sbjct: 390 LKEEGMDCFEL--MTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWK 447

Query: 206 SMVA 209
           ++++
Sbjct: 448 TLLS 451



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           AC  L  L   +Q+HA    +G  ++ F A+ L+  YA  G +  A  +F  I  +NV+ 
Sbjct: 53  ACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMS 109

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN +  G+ ++        LF++M +     N  T+ ++++  +++G  E+   +F L +
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPER----NVATWNAMVAGLTNLGFDEESLGFF-LDM 164

Query: 365 KQHNVLPNVF 374
           ++  + P+ F
Sbjct: 165 RREGMHPDEF 174


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 349/575 (60%), Gaps = 14/575 (2%)

Query: 38   ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
            +TL SCA     + G+  H + I  GL+ D   SN L+  Y++   +   +KVF  MP+ 
Sbjct: 461  STLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEY 520

Query: 98   CIVSWNTIIGSY-TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
              VSWN+ IG+  T+     +A+  F+ M++ G  P +  T  ++L A ++   +   +Q
Sbjct: 521  DQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKP-NRVTFINILSAVSSLSLLELGRQ 579

Query: 157  LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQNE 215
            +H   LK ++  +  +   LL  Y KC  + D   +F  M ER +EV+W++M++G++ N 
Sbjct: 580  IHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNG 639

Query: 216  LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
            +  +A+ L       G   + FT+++V+ ACA +A L +G +VHA   +    + +   S
Sbjct: 640  ILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGS 699

Query: 276  SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            +LVDMYAKCG +  A   F  +  +N+  WN+MISG++RH    + + LF +M+Q G  P
Sbjct: 700  ALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLP 759

Query: 336  NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            +  T++ VLSACSH+G+V++G  +F  M + + + P + H+SCM+D+LGRAG + +  + 
Sbjct: 760  DHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEF 819

Query: 396  ILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            I  MP +  A +W ++L +C   N RN EL   AAK L  +EP NA N++LLSN++AA  
Sbjct: 820  IKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGG 879

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            +WE+V  AR  +R++EVKKE   SWV +K        G + HP   +IY KL++++ +M+
Sbjct: 880  KWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMR 939

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             LGY PET++ L+D+E   K+ELL +HSEKLA+ F ++     +PIRI+KNLR+CGDCH+
Sbjct: 940  DLGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTRQSELPIRIIKNLRVCGDCHT 998

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              K+ S I  R+ I+RD NRFHHF  G CSC D+W
Sbjct: 999  AFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 170/322 (52%), Gaps = 22/322 (6%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGL-ISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G   H  I      +D + SN+L++ YS C   I  AR+VF+E+  +   SWN+II  Y 
Sbjct: 161 GMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYC 220

Query: 111 TNGREQEAVALFINMLREGKT----PYSEFTVSS-VLCACAAKRDVFEC-----KQLHVF 160
             G    A  LF +M RE       P +E+T  S V  AC+    + +C     +Q+   
Sbjct: 221 RRGDAISAFKLFSSMQREATELNCRP-NEYTFCSLVTVACS----LVDCGLTLLEQMLAR 275

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
             K++  ++++VG+AL+  +A+ GLI  A  +FE M +RN VT + ++ G  +    EEA
Sbjct: 276 IEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEA 335

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK----QVHAVLCKTGFGSN-MFAAS 275
             +F+  + L +E N  + + ++ A    + L +GK    +VHA L +       +   +
Sbjct: 336 AKIFKEMKDL-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGN 394

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV++YAKC  + +A  +F  +  K+ V WN++ISG   + R  E +  F  M++ G+ P
Sbjct: 395 ALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVP 454

Query: 336 NEQTYISVLSACSHIGMVEKGK 357
           ++ + IS LS+C+ +G +  G+
Sbjct: 455 SKFSVISTLSSCASLGWIMLGQ 476



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 172/316 (54%), Gaps = 8/316 (2%)

Query: 57  AKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
           A+I       D    + L++ +++ GLI  A+ +F++M  R  V+ N ++       + +
Sbjct: 274 ARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGE 333

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK----QLHVFALKAAM-DRNVF 171
           EA  +F  M    +   S + V  +L A     ++ E K    ++H + ++ A+ D  + 
Sbjct: 334 EAAKIFKEMKDLVEINASSYAV--LLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWIL 391

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G AL+++YAKC  I +A  +F+ MP ++ V+W+S+++G   NE +EEA+  F   +  G
Sbjct: 392 IGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNG 451

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  ++F++ S + +CA L  ++ G+Q+H    K G   ++  +++L+ +YA+  C+ +  
Sbjct: 452 MVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQ 511

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            VF  + E + V WN+ I   +    SV + +  F +M QAG  PN  T+I++LSA S +
Sbjct: 512 KVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSL 571

Query: 351 GMVEKGKSYFDLMVKQ 366
            ++E G+    L++K 
Sbjct: 572 SLLELGRQIHALILKH 587



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 182/382 (47%), Gaps = 16/382 (4%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H +I   GL +D    N L+N + + G +  A+K+FDEMPQ+ +VSW+ ++  Y  NG  
Sbjct: 62  HLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMP 121

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRDVFECKQLHVFALKAAMDRNVFVG 173
            EA  LF  ++  G  P + + + S L AC       +    ++H    K+    ++ + 
Sbjct: 122 DEACMLFRGIISAGLLP-NHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLS 180

Query: 174 TALLDVYAKCGL-ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF----RRAQ 228
             L+ +Y+ C   I DA RVFE +  +   +W+S+++ + +      A  LF    R A 
Sbjct: 181 NVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREAT 240

Query: 229 VLGLEYNQFTISSVICACAGLA--ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            L    N++T  S++     L    L   +Q+ A + K+ F  +++  S+LV  +A+ G 
Sbjct: 241 ELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGL 300

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           +  A  +F  ++++N V  N ++ G +R  +  E   +F++M+   +  N  +Y  +LSA
Sbjct: 301 IDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVLLSA 359

Query: 347 CSHIGMVE----KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
            +    ++    KG+     +++   V   +   + ++++  +   I  A  +   MP  
Sbjct: 360 FTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSK 419

Query: 403 ATASMWGSLLASCRNYRNLELA 424
            T S W S+++   +    E A
Sbjct: 420 DTVS-WNSIISGLDHNERFEEA 440



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 169/326 (51%), Gaps = 22/326 (6%)

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           V +  QLH+   K  +  +VF    L++++ + G +  A ++F+ MP++N V+WS +V+G
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA--LIQGKQVHAVLCKTGFG 268
           + QN + +EA +LFR     GL  N + I S + AC  L    L  G ++H ++ K+ + 
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 269 SNMFAASSLVDMYAKCGCVV-DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
           S+M  ++ L+ MY+ C   + DA  VF  I+ K    WN++IS + R   ++    LF  
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSS 234

Query: 328 MQQAGLH----PNEQTYISVLS-ACSHIGMVEKGKSYFDLM---VKQHNVLPNVFHYSCM 379
           MQ+        PNE T+ S+++ ACS   +V+ G +  + M   +++ + + +++  S +
Sbjct: 235 MQREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSAL 291

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +    R GLI  A  +   M      +M G ++   R ++  E A+I  K++  +   NA
Sbjct: 292 VSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKI-FKEMKDLVEINA 350

Query: 440 GNHLLL-------SNIYAANRRWEEV 458
            ++ +L       SN+    R+ +EV
Sbjct: 351 SSYAVLLSAFTEFSNLKEGKRKGQEV 376



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +CA      RG   HA  I   L  + +  + L++ Y+KCG I  A + F+ M
Sbjct: 662 TLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELM 721

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           P R I SWN++I  Y  +G   +A+ LF  M + G+ P    T   VL AC+
Sbjct: 722 PVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLP-DHVTFVGVLSACS 772


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 336/605 (55%), Gaps = 41/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   + +CA+ R    G+   A I  +GL  + +  N L++ Y KCG I  A+++FDE 
Sbjct: 234 TMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDEC 293

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V +NTI+ +Y   G  +EA+A+   ML++G  P    T+ S + A A   D+F  
Sbjct: 294 VDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP-DRVTMLSAISASAQLVDLFYG 352

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM------------------ 196
           K  H + ++  ++    +G  ++D+Y KCG    A RVF+ M                  
Sbjct: 353 KVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRN 412

Query: 197 -------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                        PERN V W++M++G VQ  L+E+A+ LFR  Q  G++ ++ T+  + 
Sbjct: 413 GDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIA 472

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC  L A    K VH  + K G   +M   ++LVDM+A+CG    A  VF+ + E++V 
Sbjct: 473 SACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVS 532

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W   I   +          LF +M   G+ P+   ++ VL+ACSH G VE+G   F LM
Sbjct: 533 AWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM 592

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
            + H + P + HY CM+D+LGRAGL+ EA+DLI +MP +    +WGSLLA+CR ++N+E+
Sbjct: 593 -EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEM 651

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK- 482
           A  AA+++  + P  AG H+LLSNIYA+  +W +VAR R  +R+  V+K    S V++  
Sbjct: 652 ATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNG 711

Query: 483 -------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                  G  +HP +  I   L+++       G+ P+  + L DV++  K+ LL  HSEK
Sbjct: 712 VIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEK 771

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+     +PIR++KNLR+C DCHSF K AS I  RE IVRD NRFH F  G CS
Sbjct: 772 LAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCS 831

Query: 596 CWDFW 600
           C D+W
Sbjct: 832 CCDYW 836



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 204/436 (46%), Gaps = 36/436 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L  C +  A   G   H  ++ MGL  D    N LI+FY++CG +    KVF+ M
Sbjct: 133 TFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGM 192

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW ++I  Y    R +EAV+LF  M+  G  P S  T+  V+ ACA  RD+   
Sbjct: 193 SERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRP-SSVTMVCVISACAKLRDLDMG 251

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +++  +  +  +  N  +  AL+D+Y KCG I  A R+F+   +RN V ++++++ + + 
Sbjct: 252 ERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQ 311

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  EAL +       G   ++ T+ S I A A L  L  GK  H  + + G        
Sbjct: 312 GLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIG 371

Query: 275 SSLVDMYAKCG-----C--------------------------VVDAYFVFSGIEEKNVV 303
           + ++DMY KCG     C                          V  A+ VF+ I E+N V
Sbjct: 372 NVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAV 431

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WNTMISG  + +   + + LF +MQ  G+  +  T + + SAC ++G  E  K +    
Sbjct: 432 FWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAK-WVHTY 490

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
           ++++ +  ++   + ++D+  R G    A   + N   +   S W + + +     N E 
Sbjct: 491 IEKNGIPCDMRLNTALVDMFARCGDPQSAMQ-VFNKMTERDVSAWTAAIGTMAMEGNGEG 549

Query: 424 AEIAAKQLF--GMEPD 437
           A     Q+   G++PD
Sbjct: 550 ATGLFNQMLIQGVKPD 565



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 170/328 (51%), Gaps = 12/328 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGA 87
           T+ S L  +L+ C   +   + K  H +I   GL+    T   L+N  ++      +  A
Sbjct: 23  TKDSCLNESLRCC---KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYA 79

Query: 88  RKVF-----DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
           RK F     D      +   N++I  Y++ G  +EA+ L++ ML  G TP + +T   VL
Sbjct: 80  RKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTP-NHYTFPFVL 138

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
             C       E  Q+H   +K  ++ +VF+   L+  YA+CG +    +VFE M ERN V
Sbjct: 139 SGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVV 198

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+S++ G+ + +  +EA+ LF      G+  +  T+  VI ACA L  L  G++V A +
Sbjct: 199 SWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI 258

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            + G   N    ++LVDMY KCG +  A  +F    ++N+VL+NT++S ++R   + E +
Sbjct: 259 GELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREAL 318

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHI 350
            + ++M Q G  P+  T +S +SA + +
Sbjct: 319 AILDEMLQQGPRPDRVTMLSAISASAQL 346


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 342/604 (56%), Gaps = 42/604 (6%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L++C +      GK  H  ++  GL+ D    N L+  Y +C  +  AR VFD+M +R
Sbjct: 129 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 188

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSW+T+I S + N     A+ L   M      P SE  + S++   A   ++   K +
Sbjct: 189 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRP-SEVAMVSMVNLFADTANMRMGKAM 247

Query: 158 HVFALKAAMDRNVFVGT--ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           H + ++ + + ++ V T  ALLD+YAKCG +  A ++F  + ++  V+W++M+AG +++ 
Sbjct: 248 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 307

Query: 216 LYEEALILFRRAQ-------------------------------VLGLEYNQFTISSVIC 244
             EEA  LF   Q                                 G+   + TI S++ 
Sbjct: 308 RLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 367

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            CA   AL  GK VH+ + K     +    ++LVDMYAKCG +  A  +F     +++ +
Sbjct: 368 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 427

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN +I+GF+ H    E + +F +M++ G+ PN+ T+I +L ACSH G+V +GK  F+ MV
Sbjct: 428 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 487

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
               ++P + HY CM+D+LGRAGL+ EA+++I +MP      +WG+L+A+CR ++N +L 
Sbjct: 488 HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLG 547

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-- 482
           E+AA QL  +EP+N G ++L+SNIYAA  RW + A  RK ++   +KKE   S +E+   
Sbjct: 548 ELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGT 607

Query: 483 ------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                 G ++HP+I  I   L ++  ++ + GY P+T   L ++++  K+  L +HSEKL
Sbjct: 608 VHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKL 667

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A+ FGL+   P  PIRI+KNLR+C DCH+  K  S+I GR  IVRD NRFHHF  G CSC
Sbjct: 668 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSC 727

Query: 597 WDFW 600
            D+W
Sbjct: 728 GDYW 731



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 180/375 (48%), Gaps = 44/375 (11%)

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           WN +I SYT   + + A+ ++   LR+       F   SVL AC         K++H F 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQ-LRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
           LK  +DR+VFVG AL+ +Y +C  +  A  VF+ M ER+ V+WS+M+    +N+ ++ AL
Sbjct: 151 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMAL 210

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS--LVD 279
            L R    + +  ++  + S++   A  A +  GK +HA + +     +M   ++  L+D
Sbjct: 211 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 270

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE------------VMI---- 323
           MYAKCG +  A  +F+G+ +K VV W  MI+G  R  R  E            VMI    
Sbjct: 271 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 324 ---------------LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVK 365
                          LF++M+ +G+ P + T +S+LS C+  G ++ GK   SY D    
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYID---- 386

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLEL 423
           +  V  +    + ++D+  + G I+ A  L +         MW +++   +   Y    L
Sbjct: 387 KERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHGYGEEAL 445

Query: 424 AEIAAKQLFGMEPDN 438
              A  +  G++P++
Sbjct: 446 DIFAEMERQGVKPND 460



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 11/182 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L  CA   A   GK  H+ I    +  D + +  L++ Y+KCG I+ A ++F E 
Sbjct: 361 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEA 420

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R I  WN II  +  +G  +EA+ +F  M R+G  P ++ T   +L AC+    V E 
Sbjct: 421 ISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKP-NDITFIGLLHACSHAGLVTEG 479

Query: 155 KQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
           K+L     H F L   ++        ++D+  + GL+ +A  + +SMP + N + W ++V
Sbjct: 480 KKLFEKMVHTFGLVPQIEHY----GCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535

Query: 209 AG 210
           A 
Sbjct: 536 AA 537


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/578 (35%), Positives = 349/578 (60%), Gaps = 11/578 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L  + + + + AR    + G   HA  +  GL++D    N L++ Y+K   +     +F
Sbjct: 382 DLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIF 441

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP + +VSW TII  +  NG    A+ LF  +  EG        +SS+L AC+  + +
Sbjct: 442 DKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEG-IDLDVMMISSILLACSGLKLI 500

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++H + ++  +  ++ +   ++DVY +CG +  A+R+FE +  ++ V+W+SM++ +
Sbjct: 501 SSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY 559

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V N L  EAL LF   +  G+E +  ++ S++ A A L+AL +GK++H  L + GF    
Sbjct: 560 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 619

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             AS+LVDMYA+CG +  +  VF+ I  K++VLW +MI+ +  H      + LF +M+  
Sbjct: 620 SLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDE 679

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            + P+   +++VL ACSH G++ +G+ + + M  ++ + P   HY+C++D+LGRA  + E
Sbjct: 680 SIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEE 739

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY  +  M  + TA +W +LL +C+ + N EL EIAA++L  M+P+N GN++L+SN+Y+A
Sbjct: 740 AYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSA 799

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
            RRW++V   R  ++ S +KK    SW+E+  K        ++HP+  EIYSKL ++ E+
Sbjct: 800 ERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEK 859

Query: 504 M-KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           + K+ GY  +T+  LH+ ++  K ++L  HSE+LA+ +G++    G  +RI KNLR+CGD
Sbjct: 860 LAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGD 919

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+F K  S+   RE ++RD NRFHHF  G CSC D W
Sbjct: 920 CHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 214/408 (52%), Gaps = 9/408 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C   +    G   H   I  G  +    +N ++  Y+KC  ++GAR++FD M
Sbjct: 182 TFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRM 241

Query: 95  PQR-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P++  +VSWN++I +Y++NG+  EA+ LF  M +    P + +T  + L AC     + +
Sbjct: 242 PEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAP-NTYTFVAALQACEDSSFIKQ 300

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H   LK++   NVFV  AL+ +YA+ G + +A+ +F +M + + ++W+SM++GFVQ
Sbjct: 301 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 360

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N LY EAL  +   +  G + +   + S+I A A     + G Q+HA   K G  S++  
Sbjct: 361 NGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQV 420

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +SLVDMYAK   +     +F  + +K+VV W T+I+G +++      + LF ++Q  G+
Sbjct: 421 GNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGI 480

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             +     S+L ACS + ++   K     ++++   L ++   + ++D+ G  G +  A 
Sbjct: 481 DLDVMMISSILLACSGLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAA 538

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF---GMEPDN 438
            +   + F    S W S++ SC  +  L    +    L    G+EPD+
Sbjct: 539 RMFELIEFKDVVS-WTSMI-SCYVHNGLANEALELFHLMKETGVEPDS 584



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 178/331 (53%), Gaps = 6/331 (1%)

Query: 26  ANANATELSTLQA---TLQSCARERAPVRGKVCHAKII-GMGLNNDTLTSNILINFYSKC 81
           AN + ++ S  +A    L+ C  ++A   G+  HA +I    L N    S  L+  Y KC
Sbjct: 68  ANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKC 127

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G +  A K+FD MP + I +WN +IG+Y TNG    ++ L+  M R    P    T   +
Sbjct: 128 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCI 186

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L AC   +D     ++H  A+K      VFV  +++ +Y KC  ++ A ++F+ MPE+ +
Sbjct: 187 LKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 246

Query: 202 -VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            V+W+SM++ +  N    EAL LF   Q   L  N +T  + + AC   + + QG  +HA
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 306

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
            + K+ +  N+F A++L+ MYA+ G + +A  +F  +++ + + WN+M+SGF ++    E
Sbjct: 307 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHE 366

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +  + +M+ AG  P+    IS+++A +  G
Sbjct: 367 ALQFYHEMRDAGQKPDLVAVISIIAASARSG 397



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 170/310 (54%), Gaps = 14/310 (4%)

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTV----SSVLCACAAKRDVFECKQLHVFALKA- 164
           + N   Q    LF N     ++P S+F++    SSVL  C +K+ + E +Q+H   + + 
Sbjct: 55  SVNEAFQSLTDLFAN-----QSP-SQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSN 108

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
           A+  +VF+ T L+ +Y KCG + DA ++F+ MP +   TW++M+  +V N     +L L+
Sbjct: 109 ALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY 168

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           R  +V G+  +  T   ++ AC  L     G +VH +  K G+ S +F A+S+V MY KC
Sbjct: 169 REMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKC 228

Query: 285 GCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
             +  A  +F  + EK +VV WN+MIS +S + +S+E + LF +MQ+A L PN  T+++ 
Sbjct: 229 NDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAA 288

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           L AC     +++G  +    V + +   NVF  + +I +  R G + EA ++  NM  D 
Sbjct: 289 LQACEDSSFIKQGM-FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DW 346

Query: 404 TASMWGSLLA 413
               W S+L+
Sbjct: 347 DTISWNSMLS 356


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 330/578 (57%), Gaps = 45/578 (7%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T    L++C      V G+  H     +G   +   +  LI+ YS+ G    AR +F
Sbjct: 117 DFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 173

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R + SWN +I     NG   +A+ +   M  EG    +  TV S+L         
Sbjct: 174 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG-IKMNFVTVVSIL--------- 223

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                             VFV     D+YAK GL+  A +VFE +P ++ ++W++++ G+
Sbjct: 224 -----------------PVFV-----DMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGY 261

Query: 212 VQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            QN L  EA+ +++  +    +  NQ T  S++ A A + AL QG ++H  + KT    +
Sbjct: 262 AQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLD 321

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F A+ L+D+Y KCG +VDA  +F  + +++ V WN +IS    H  + + + LF +M  
Sbjct: 322 VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 381

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ P+  T++S+LSACSH G VE+GK  F LM +++ + P++ HY CM+D+LGRAG + 
Sbjct: 382 EGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLE 440

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
            AYD I +MP    AS+WG+LL +CR + N+EL + A+ +LF ++  N G ++LLSNIYA
Sbjct: 441 MAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYA 500

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
              +WE V + R L R+  +KK    S +E+         G ++HP+  EIY +L  L  
Sbjct: 501 NVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTA 560

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           +MK LGY P+    L DVE+  K+ +L  HSE+LA+ FG++   P  PIRI KNLR+CGD
Sbjct: 561 KMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGD 620

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+  KF SRI  RE +VRD NRFHHF +G CSC D+W
Sbjct: 621 CHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 191/362 (52%), Gaps = 37/362 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  HA ++  G       S  L+N Y+  G +S +R  FD++PQ+ + +WN++I +Y  N
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 95

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G   EA+  F  +L   +     +T   VL AC     + + +++H +A K     NVFV
Sbjct: 96  GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVDGRKIHCWAFKLGFQWNVFV 152

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
             +L+ +Y++ G    A  +F+ MP R+  +W++M++G +QN    +AL +    ++ G+
Sbjct: 153 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 212

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           + N  T+ S++                                  VDMYAK G +  A+ 
Sbjct: 213 KMNFVTVVSIL-------------------------------PVFVDMYAKLGLLDSAHK 241

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIG 351
           VF  I  K+V+ WNT+I+G++++  + E + +++ M++   + PN+ T++S+L A +H+G
Sbjct: 242 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 301

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +++G      ++K  N+  +VF  +C+ID+ G+ G + +A  L   +P +++ + W ++
Sbjct: 302 ALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAI 359

Query: 412 LA 413
           ++
Sbjct: 360 IS 361


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 351/609 (57%), Gaps = 56/609 (9%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CAR  +   GK  HA++I    + D   ++ L+  Y+K G    A+ VF+ 
Sbjct: 271 TTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNS 330

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  V+W  +I  +   G   E+V LF N +R       +F +++++  C ++ D+  
Sbjct: 331 LHDRNNVAWTVLISGFLQYGCFTESVELF-NQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKC------------------------------ 183
            +QLH   LK+   + V V  +L+ +YAKC                              
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 449

Query: 184 -GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY---NQFTI 239
            G ++ A   F+ M E+N +TW++M+  ++Q+   E+ L +++   +L  EY   +  T 
Sbjct: 450 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYK--VMLSEEYVRPDWVTY 507

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            ++   CA L A   G Q+     K G   +   A++++ MY+KCG +++A  VF  +  
Sbjct: 508 VTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNV 567

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K++V WN MI+G+S+H    + + +F+ + + G  P+  +Y++VLS CSH G+V++GK Y
Sbjct: 568 KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFY 627

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FD+M + HN+ P + H+SCM+D+LGRAG + EA DLI +MP   TA +WG+LL++C+ + 
Sbjct: 628 FDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 687

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N ELAE+AAK +F ++  ++G+++L++ IYA   + ++ A+ RKL+RD  +KK    SW+
Sbjct: 688 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWM 747

Query: 480 EIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E+  K         +HP++  I  KL++L+E++ +LGY            DS + E  IH
Sbjct: 748 EVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVR---------TDSTRSE--IH 796

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+ FGLM L   +PI IMKNLRICGDCH+ +K  S + GRE ++RD  RFHHF  
Sbjct: 797 HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNG 856

Query: 592 GSCSCWDFW 600
           GSCSC D+W
Sbjct: 857 GSCSCGDYW 865



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 165/305 (54%), Gaps = 5/305 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y K   +  A ++FD MP+R +VSWN ++ + + +GR +EA+ + ++M  +G  
Sbjct: 208 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-V 266

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
                T +S L ACA    +   KQLH   ++     + +V +AL+++YAK G   +A  
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 326

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF S+ +RN V W+ +++GF+Q   + E++ LF + +   +  +QF ++++I  C     
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H++  K+G    +  ++SL+ MYAKC  +  A  +F  + EK++V W +MI+ 
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 446

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +S+     +    F+ M +     N  T+ ++L A    G  E G   + +M+ +  V P
Sbjct: 447 YSQVGNVAKAREFFDGMSE----KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 502

Query: 372 NVFHY 376
           +   Y
Sbjct: 503 DWVTY 507



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 159/312 (50%), Gaps = 31/312 (9%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + +T N+++N Y+K G +S A ++F  MP R + SWNT++  Y  + +   ++  F++M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R G +  + FT++  + +C A        QL     K     +  V  AL+D++ +CG +
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189

Query: 187 SDASRVF-------------------------------ESMPERNEVTWSSMVAGFVQNE 215
             ASR+F                               +SMPER+ V+W+ MV+   Q+ 
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
              EAL +    Q  G+  +  T +S + ACA L++L  GKQ+HA + +     + + AS
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 309

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV++YAK GC  +A  VF+ + ++N V W  +ISGF ++    E + LF +M+   +  
Sbjct: 310 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 369

Query: 336 NEQTYISVLSAC 347
           ++    +++S C
Sbjct: 370 DQFALATLISGC 381



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 38/284 (13%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           NV     +L+ YAK G +SDA  +F  MP R+  +W+++++G+ Q+  Y  +L  F    
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 229 VLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
             G  + N FT++  + +C  L       Q+ A++ K     +   A++LVDM+ +CG V
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189

Query: 288 -------------------------VDAYFV------FSGIEEKNVVLWNTMISGFSRHA 316
                                    V  Y V      F  + E++VV WN M+S  S+  
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R  E + +   MQ  G+  +  TY S L+AC+ +  +  GK     +++    LP++  Y
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN---LPHIDPY 306

Query: 377 --SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
             S ++++  ++G   EA   + N   D     W  L++    Y
Sbjct: 307 VASALVELYAKSGCFKEAKG-VFNSLHDRNNVAWTVLISGFLQY 349



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 143/328 (43%), Gaps = 38/328 (11%)

Query: 27  NANATELSTLQ----ATLQS-CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           N    EL TL     ATL S C        G+  H+  +  G     + SN LI+ Y+KC
Sbjct: 360 NQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 419

Query: 82  -------------------------------GLISGARKVFDEMPQRCIVSWNTIIGSYT 110
                                          G ++ AR+ FD M ++ +++WN ++G+Y 
Sbjct: 420 DNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYI 479

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +G E++ + ++  ML E        T  ++   CA         Q+    +K  +  + 
Sbjct: 480 QHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDT 539

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V  A++ +Y+KCG I +A +VF+ +  ++ V+W++M+ G+ Q+ + ++A+ +F      
Sbjct: 540 SVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKR 599

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVD 289
           G + +  +  +V+  C+    + +GK    ++ +       +   S +VD+  + G + +
Sbjct: 600 GAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTE 659

Query: 290 AYFVFSGIEEKNVV-LWNTMISGFSRHA 316
           A  +   +  K    +W  ++S    H 
Sbjct: 660 AKDLIDDMPMKPTAEVWGALLSACKIHG 687



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHAR 317
           H  L   G  S +F  ++L+  Y  CG + DA   +   I   NV+  N M++G+++  R
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             + + LF +M    +            +  ++  +E     F  M +  +  PN F  +
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLET----FLSMHRSGDSWPNAFTLA 142

Query: 378 CMIDILGRAG 387
           C +   G  G
Sbjct: 143 CAMKSCGALG 152


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 351/609 (57%), Gaps = 56/609 (9%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CAR  +   GK  HA++I    + D   ++ L+  Y+K G    A+ VF+ 
Sbjct: 291 TTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNS 350

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  V+W  +I  +   G   E+V LF N +R       +F +++++  C ++ D+  
Sbjct: 351 LHDRNNVAWTVLISGFLQYGCFTESVELF-NQMRAELMTLDQFALATLISGCCSRMDLCL 409

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKC------------------------------ 183
            +QLH   LK+   + V V  +L+ +YAKC                              
Sbjct: 410 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 469

Query: 184 -GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY---NQFTI 239
            G ++ A   F+ M E+N +TW++M+  ++Q+   E+ L +++   +L  EY   +  T 
Sbjct: 470 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYK--VMLSEEYVRPDWVTY 527

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            ++   CA L A   G Q+     K G   +   A++++ MY+KCG +++A  VF  +  
Sbjct: 528 VTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNV 587

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K++V WN MI+G+S+H    + + +F+ + + G  P+  +Y++VLS CSH G+V++GK Y
Sbjct: 588 KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFY 647

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FD+M + HN+ P + H+SCM+D+LGRAG + EA DLI +MP   TA +WG+LL++C+ + 
Sbjct: 648 FDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 707

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N ELAE+AAK +F ++  ++G+++L++ IYA   + ++ A+ RKL+RD  +KK    SW+
Sbjct: 708 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWM 767

Query: 480 EIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E+  K         +HP++  I  KL++L+E++ +LGY            DS + E  IH
Sbjct: 768 EVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVR---------TDSTRSE--IH 816

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+ FGLM L   +PI IMKNLRICGDCH+ +K  S + GRE ++RD  RFHHF  
Sbjct: 817 HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNG 876

Query: 592 GSCSCWDFW 600
           GSCSC D+W
Sbjct: 877 GSCSCGDYW 885



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 165/305 (54%), Gaps = 5/305 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y K   +  A ++FD MP+R +VSWN ++ + + +GR +EA+ + ++M  +G  
Sbjct: 228 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-V 286

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
                T +S L ACA    +   KQLH   ++     + +V +AL+++YAK G   +A  
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 346

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF S+ +RN V W+ +++GF+Q   + E++ LF + +   +  +QF ++++I  C     
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H++  K+G    +  ++SL+ MYAKC  +  A  +F  + EK++V W +MI+ 
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 466

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +S+     +    F+ M +     N  T+ ++L A    G  E G   + +M+ +  V P
Sbjct: 467 YSQVGNVAKAREFFDGMSE----KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 522

Query: 372 NVFHY 376
           +   Y
Sbjct: 523 DWVTY 527



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 159/312 (50%), Gaps = 31/312 (9%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + +T N+++N Y+K G +S A ++F  MP R + SWNT++  Y  + +   ++  F++M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R G +  + FT++  + +C A        QL     K     +  V  AL+D++ +CG +
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209

Query: 187 SDASRVF-------------------------------ESMPERNEVTWSSMVAGFVQNE 215
             ASR+F                               +SMPER+ V+W+ MV+   Q+ 
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
              EAL +    Q  G+  +  T +S + ACA L++L  GKQ+HA + +     + + AS
Sbjct: 270 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 329

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV++YAK GC  +A  VF+ + ++N V W  +ISGF ++    E + LF +M+   +  
Sbjct: 330 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 389

Query: 336 NEQTYISVLSAC 347
           ++    +++S C
Sbjct: 390 DQFALATLISGC 401



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 38/284 (13%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           NV     +L+ YAK G +SDA  +F  MP R+  +W+++++G+ Q+  Y  +L  F    
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 229 VLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
             G  + N FT++  + +C  L       Q+ A++ K     +   A++LVDM+ +CG V
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209

Query: 288 -------------------------VDAYFV------FSGIEEKNVVLWNTMISGFSRHA 316
                                    V  Y V      F  + E++VV WN M+S  S+  
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R  E + +   MQ  G+  +  TY S L+AC+ +  +  GK     +++    LP++  Y
Sbjct: 270 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN---LPHIDPY 326

Query: 377 --SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
             S ++++  ++G   EA   + N   D     W  L++    Y
Sbjct: 327 VASALVELYAKSGCFKEAKG-VFNSLHDRNNVAWTVLISGFLQY 369



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 143/328 (43%), Gaps = 38/328 (11%)

Query: 27  NANATELSTLQ----ATLQS-CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           N    EL TL     ATL S C        G+  H+  +  G     + SN LI+ Y+KC
Sbjct: 380 NQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 439

Query: 82  -------------------------------GLISGARKVFDEMPQRCIVSWNTIIGSYT 110
                                          G ++ AR+ FD M ++ +++WN ++G+Y 
Sbjct: 440 DNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYI 499

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +G E++ + ++  ML E        T  ++   CA         Q+    +K  +  + 
Sbjct: 500 QHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDT 559

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V  A++ +Y+KCG I +A +VF+ +  ++ V+W++M+ G+ Q+ + ++A+ +F      
Sbjct: 560 SVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKR 619

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVD 289
           G + +  +  +V+  C+    + +GK    ++ +       +   S +VD+  + G + +
Sbjct: 620 GAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTE 679

Query: 290 AYFVFSGIEEKNVV-LWNTMISGFSRHA 316
           A  +   +  K    +W  ++S    H 
Sbjct: 680 AKDLIDDMPMKPTAEVWGALLSACKIHG 707



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHAR 317
           H  L   G  S +F  ++L+  Y  CG + DA   +   I   NV+  N M++G+++  R
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             + + LF +M    +            +  ++  +E     F  M +  +  PN F  +
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLET----FLSMHRSGDSWPNAFTLA 162

Query: 378 CMIDILGRAG 387
           C +   G  G
Sbjct: 163 CAMKSCGALG 172


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 337/584 (57%), Gaps = 44/584 (7%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA ++  GL ++ + +  L   Y+  G +  +  VF+   +  + S++ II S+  +   
Sbjct: 67  HASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLF 126

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             A   +  ML  G  P + FT SSVL +C+ +      K LH  A+K  +  +++V T 
Sbjct: 127 DRAFGYYSQMLSCGVEP-NAFTFSSVLKSCSLESG----KVLHCQAIKLGLGSDLYVRTG 181

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVT-------------------------------W 204
           L+DVYA+ G +  A ++F+ MPER+ V+                               W
Sbjct: 182 LVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCW 241

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           + M+ G+ Q+ +  E+L LFRR  V     N+ T+ +V+ AC  L AL  G+ +H+ +  
Sbjct: 242 NVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIEN 301

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            G   N+   ++L+DMY+KCG + DA  VF  I +K+VV WN+MI G++ H  S   + L
Sbjct: 302 KGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQL 361

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           FE+M + G  P + T+I +LSAC H G+VE+G+S+F LM  ++ + P + HY CM+++LG
Sbjct: 362 FEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLG 421

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG + EAY L+ NM   A   +WG+LL  CR + N++L E  AK L   +  N+G ++L
Sbjct: 422 RAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVL 481

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
           LSN+YAA   WE VA+ R L+++  ++KE   S +E+         G+R HP+  EIY  
Sbjct: 482 LSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVM 541

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L ++   +K  GY P+T+  LHD+ + +K++ L  HSEKLA+ FGL+   PG  ++I+KN
Sbjct: 542 LNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKN 601

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+C DCH+ MK  S I GR+ ++RD NRFHHF +G CSC D+W
Sbjct: 602 LRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 146/308 (47%), Gaps = 38/308 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L+SC+ E     GKV H + I +GL +D      L++ Y++ G +  AR++FD+M
Sbjct: 147 TFSSVLKSCSLES----GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKM 202

Query: 95  PQRCIVS-------------------------------WNTIIGSYTTNGREQEAVALFI 123
           P+R +VS                               WN +IG Y  +G   E++ LF 
Sbjct: 203 PERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFR 262

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            ML     P +E TV +VL AC     +   + +H +     +  NV VGTAL+D+Y+KC
Sbjct: 263 RMLVAKAIP-NEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKC 321

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA  VF+ + +++ V W+SM+ G+  +   + AL LF      G +    T   ++
Sbjct: 322 GSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGIL 381

Query: 244 CACAGLAALIQGKQVHAVL-CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKN 301
            AC     + +G+    ++  K G    +     +V++  + G + +AY +   +    +
Sbjct: 382 SACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAAD 441

Query: 302 VVLWNTMI 309
            VLW T++
Sbjct: 442 PVLWGTLL 449



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 37/288 (12%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   L+  +  N  +   L   YA  G +  +  VF +  E N  ++S+++   VQ+ 
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           L++ A   + +    G+E N FT SSV+ +C+    L  GK +H    K G GS+++  +
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRT 180

Query: 276 SLVDMYAKCGCVV-------------------------------DAYFVFSGIEEKNVVL 304
            LVD+YA+ G VV                                A  +F G++E++VV 
Sbjct: 181 GLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVC 240

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN MI G+++     E + LF +M  A   PNE T ++VLSAC  +G +E G+ +    +
Sbjct: 241 WNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGR-WIHSYI 299

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +   +  NV   + +ID+  + G + +A  L+ +   D     W S++
Sbjct: 300 ENKGIQINVHVGTALIDMYSKCGSLEDA-RLVFDRIRDKDVVAWNSMI 346


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/608 (36%), Positives = 346/608 (56%), Gaps = 43/608 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T    L+SCA+ +    G+  HA+++ +G   D      LI+ Y++ G            
Sbjct: 85  TFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXS 144

Query: 83  ----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                     LI+G         ARKVFD + +R +VSWN +I  Y  N   +EA+ LF 
Sbjct: 145 SQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFK 204

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AMDRNVFVGTALLDVYAK 182
            M+R    P  E T+ SVL ACA    +   +++H           ++ +  A + +Y+K
Sbjct: 205 EMMRTNVRP-DEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSK 263

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG +  AS +FE +  ++ V+W++++ G+    LY+EAL+LF+     G   N  T+ SV
Sbjct: 264 CGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 323

Query: 243 ICACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           + ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A+ VF+ +  K
Sbjct: 324 LPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHK 383

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++  WN MI GF+ H R+     LF +M++ G+ P++ T + +LSACSH G+++ G+  F
Sbjct: 384 SLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIF 443

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             + + +N+ P + HY CMID+LG AGL  EA ++I  MP +    +W SLL +C+ + N
Sbjct: 444 KSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGN 503

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           LELAE  A++L  +EP+N+G+++LLSNIYA   RWE+VAR R+++    +KK    S +E
Sbjct: 504 LELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIE 563

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           I         G + HP+  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HH
Sbjct: 564 IDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHH 623

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ FGL+   PG  + ++KNLR+C +CH   K  S+I  RE + RD  RFHHF +G
Sbjct: 624 SEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDG 683

Query: 593 SCSCWDFW 600
            CSC D+W
Sbjct: 684 VCSCCDYW 691



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 209/423 (49%), Gaps = 44/423 (10%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSYTTN 112
           HA+++  GL+N     + L+          G   A  VF+   +  ++ WNT++    ++
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
                 + +++ M+  G  P + +T   +L +CA  +   E +Q+H   +K   + + + 
Sbjct: 62  SDLVSPLEMYVRMVSXGHVP-NAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 173 GTALLDVYAKCGLISD-------------------------------ASRVFESMPERNE 201
            T+L+ +YA+ G + D                               A +VF+ + ER+ 
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V+W++M+ G+V+N  YEEAL LF+      +  ++ T+ SV+ ACA   ++  G+++H +
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 262 LCK-TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +    GFGS++   ++ + +Y+KCG V  A  +F G+  K+VV WNT+I G++      E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVFHYS 377
            ++LF++M ++G  PN+ T +SVL AC+H+G ++ G+    Y D  +K   V       +
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK--GVTNGSALRT 358

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL--ASCRNYRNLELAEIAAKQLFGME 435
            +ID+  + G I  A+  + N     + S W +++   +     N      +  +  G+E
Sbjct: 359 SLIDMYAKCGDIEAAHQ-VFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIE 417

Query: 436 PDN 438
           PD+
Sbjct: 418 PDD 420


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 325/559 (58%), Gaps = 46/559 (8%)

Query: 52   GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            G   HA ++ +GL+ +    N LI+ Y KCG +  A +V DZMP R +VSWN+++     
Sbjct: 1145 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCAR 1204

Query: 112  NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            NG+  +A+ +                                CK++ +  LK     +  
Sbjct: 1205 NGQFDDALEV--------------------------------CKEMELLGLKP----DAG 1228

Query: 172  VGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
               +LL       L  +S    +F  +  ++ V+W+ M+A ++ N +  EA+ +F + + 
Sbjct: 1229 TMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED 1288

Query: 230  LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
              ++ +  +I+SV+ AC  L+AL+ G+++H  + +     N+   ++L+DMYAKCGC+  
Sbjct: 1289 HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEY 1348

Query: 290  AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
            A  VF  ++ ++VV W +MIS +  + +  + + LF +MQ  GL+P+   ++SVLSACSH
Sbjct: 1349 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 1408

Query: 350  IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
             G++++G+ YF LM ++  ++P + H+ CM+D+LGRAG + EAY  I  MP +    +WG
Sbjct: 1409 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 1468

Query: 410  SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
            +LL++CR Y N+ +  +AA QLF + P+ +G ++LLSNIYA   RWE+V   R +++   
Sbjct: 1469 ALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKG 1528

Query: 470  VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            +KK    S  E+         G ++HP+  +IY +L+ LV +MK+ GY PET+  LHDVE
Sbjct: 1529 IKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVE 1588

Query: 522  DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
            +  K+  L  HSEKLA+ F ++   PG PIRI KNLR+CGDCH   K  S+I GRE  +R
Sbjct: 1589 EEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIR 1648

Query: 582  DLNRFHHFTNGSCSCWDFW 600
            D NRFHHF NG CSC D+W
Sbjct: 1649 DTNRFHHFYNGVCSCGDYW 1667



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 191/389 (49%), Gaps = 39/389 (10%)

Query: 53   KVCHAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            K  H+KI I   L+++      L+  Y+ CG     R +FDE+P++ +V +N +I SY  
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 112  NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            N    +A+ +F NM   G  P   +T   VL A +   D++   Q+H   ++  +D NVF
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDP-DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVF 1162

Query: 172  VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
            VG  L+ +Y KCG + +A RV + MP R+ V+W+S+VAG  +N  +++AL + +  ++LG
Sbjct: 1163 VGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG 1222

Query: 232  LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            L+ +  T++S++ A             +  L    F   MF                   
Sbjct: 1223 LKPDAGTMASLLPAV-----------TNTCLDNVSFVKEMFMK----------------- 1254

Query: 292  FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
                 +  K++V WN MI+ +  ++   E + +F +M+   + P+  +  SVL AC  + 
Sbjct: 1255 -----LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLS 1309

Query: 352  MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
             +  G+   + +V++  + PN+   + +ID+  + G +  A ++   M F    S W S+
Sbjct: 1310 ALLLGRRIHEYVVRKR-LQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS-WTSM 1367

Query: 412  L-ASCRNYRNLELAEIAAK-QLFGMEPDN 438
            + A   N +  +   + ++ Q  G+ PD+
Sbjct: 1368 ISAYGMNGKGRDAVSLFSRMQDLGLNPDS 1396



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 11/281 (3%)

Query: 150  DVFECKQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
            D+   K+LH    +   +  N  +G  L+  YA CG       +F+ +P++N V ++ M+
Sbjct: 1039 DIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMI 1098

Query: 209  AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
              +V N LY +AL++F+     G++ + +T   V+ A +G   L  G Q+HA + + G  
Sbjct: 1099 RSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLD 1158

Query: 269  SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
             N+F  + L+ MY KCGC+V+A  V   +  ++VV WN++++G +R+ +  + + + ++M
Sbjct: 1159 LNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEM 1218

Query: 329  QQAGLHPNEQTYISVLSACSH--IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            +  GL P+  T  S+L A ++  +  V   K  F  +  +  V  NV     MI +    
Sbjct: 1219 ELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNV-----MIAVYMNN 1273

Query: 387  GLIHEAYDLILNM---PFDATASMWGSLLASCRNYRNLELA 424
             +  EA D+ L M     D  A    S+L +C +   L L 
Sbjct: 1274 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 1314



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 7/180 (3%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            ++ + L +C    A + G+  H  ++   L  + L  N LI+ Y+KCG +  AR+VFD+M
Sbjct: 1297 SIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQM 1356

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
              R +VSW ++I +Y  NG+ ++AV+LF  M   G  P S     SVL AC+    + E 
Sbjct: 1357 KFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDS-IAFVSVLSACSHAGLLDEG 1415

Query: 155  K---QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
            +   +L     K       FV   ++D+  + G + +A    + MP E NE  W ++++ 
Sbjct: 1416 RYYFKLMTEECKIVPRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 1473


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/614 (35%), Positives = 336/614 (54%), Gaps = 39/614 (6%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
             A     ST    +Q C++ RA   GK  H  I   G     +  N L+  Y+KCG + 
Sbjct: 78  GRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLV 137

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG---------------- 129
            ARKVFDEMP R + SWN ++  Y   G  +EA  LF  M  +                 
Sbjct: 138 DARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQ 197

Query: 130 ------------KTPYSE---FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
                       + P S    FTVS  + A AA + +   K++H   ++A +D +  + +
Sbjct: 198 PEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWS 257

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           +L+D+Y KCG I +A  +F+ + E++ V+W+SM+  + ++  + E   LF          
Sbjct: 258 SLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERP 317

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N++T + V+ ACA L     GKQVH  + + GF    FA+SSLVDMY KCG +  A  V 
Sbjct: 318 NEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVV 377

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
            G  + ++V W ++I G +++ +  E +  F+ + ++G  P+  T+++VLSAC+H G+VE
Sbjct: 378 DGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVE 437

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           KG  +F  + ++H +     HY+C++D+L R+G   +   +I  MP   +  +W S+L  
Sbjct: 438 KGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGG 497

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEK 474
           C  Y N++LAE AA++LF +EP+N   ++ ++NIYAA  +WEE  + RK +++  V K  
Sbjct: 498 CSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRP 557

Query: 475 SKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
             SW EIK KR        +HP   +I   L +L ++MK+ GY P T   LHDVED +K+
Sbjct: 558 GSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKE 617

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
           E L++HSEKLA+ F ++    G  I++ KNLR C DCH  +KF S I  R+  VRD  RF
Sbjct: 618 ENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRF 677

Query: 587 HHFTNGSCSCWDFW 600
           H F NG CSC D+W
Sbjct: 678 HCFENGQCSCGDYW 691



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 11/202 (5%)

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +L  EA+ L  RA+    +    T  ++I  C+   AL +GK+VH  +  +GF   +  
Sbjct: 67  QKLLREAVQLLGRAK----KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVI 122

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + L+ MYAKCG +VDA  VF  +  +++  WN M++G++      E   LF++M +   
Sbjct: 123 WNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK-- 180

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             +  ++ ++++        E+    + LM +  N  PN+F  S  +        I    
Sbjct: 181 --DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGK 238

Query: 394 DL---ILNMPFDATASMWGSLL 412
           ++   I+    D+   +W SL+
Sbjct: 239 EIHGHIVRAGLDSDEVLWSSLM 260


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 336/585 (57%), Gaps = 10/585 (1%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           +  N +  E     A    C R R    G+ CH  ++  G +      N L++ YSKC +
Sbjct: 125 SEGNVSPNEYILAIAISSCCDRGRVE-EGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSI 183

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  A  V++E+P   IV++N+I+ S   NG  +E + +  +M+ E    + + T  +   
Sbjct: 184 VQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSES-VKWDKVTFVNAFS 242

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
            CA+ +D+     +H   L + ++ + +V +A++++Y KCG    A  VF+ +  RN V 
Sbjct: 243 LCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVL 302

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W++++A   QN  +EEAL LF + +   ++ N+FT + ++ ACAGL+A   G  +H    
Sbjct: 303 WTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSE 362

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           K+GF  ++   ++L++MYAK G +  A  VFS +  ++++ WN MI GFS H    + ++
Sbjct: 363 KSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALL 422

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           +F+ M  A  HPN  T+  VLSAC H+G+V++G  Y   ++KQ  V P + HY+C++ +L
Sbjct: 423 VFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLL 482

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            + G ++EA + +   P       W +LL +C  ++N  L    A+ +  M+P++ G + 
Sbjct: 483 SKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYT 542

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYS 495
           LLSNIYA  +RW+ V + RKL+RD ++KKE   SW+EI             HP   + Y 
Sbjct: 543 LLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQ 602

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           K+++L+  +K LGY P+    LHDVED +K+  L +HSEKLA+ +GL+ L     I ++K
Sbjct: 603 KVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIK 662

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLRIC DCHS ++  S++  R  +VRD NRFHHF +G CSC D+W
Sbjct: 663 NLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 174/340 (51%), Gaps = 10/340 (2%)

Query: 52  GKVCHAKII--GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           GK  H+ +I       N  +  N LINFY+K   +S A  +FD MP+R +VSW+ ++  Y
Sbjct: 48  GKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGY 107

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             NG   + + L  +M+ EG    +E+ ++  + +C  +  V E +Q H   LK     +
Sbjct: 108 LLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFH 167

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            +V  AL+ +Y+KC ++ DA  V+  +P  + V ++S+++  V+N    E L + R    
Sbjct: 168 NYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVS 227

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             +++++ T  +    CA L  L  G  VH  +  +    + + +S++++MY KCG  + 
Sbjct: 228 ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLM 287

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF G++ +NVVLW  +++   ++    E + LF KM+Q  +  NE TY  +L+AC+ 
Sbjct: 288 ARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAG 347

Query: 350 IGMVEKG--------KSYFDLMVKQHNVLPNVFHYSCMID 381
           +     G        KS F   V   N L N++  S  I+
Sbjct: 348 LSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIE 387


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 340/613 (55%), Gaps = 40/613 (6%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           NA A +  +  + L++ ++  A   G   H     +G  +D      LI  Y+ C  I  
Sbjct: 115 NAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMD 174

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           AR +FD+M     V+WN II  Y  NG   +A+ LF +M      P S   + +VL AC 
Sbjct: 175 ARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDS-VILCTVLSACG 233

Query: 147 AKRDVFECKQLHVFALK--------------------AAMD-----------RNVFVGTA 175
              ++   + +H F                        AMD           +++ V TA
Sbjct: 234 HAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTA 293

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           +L  YAK G++ DA  +F+ M ER+ V WS+M++G+ +++  +EAL LF          +
Sbjct: 294 MLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPD 353

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           Q T+ SVI AC+ + AL Q   +H  + ++GFG  +   ++L+DMYAKCG +V A  VF 
Sbjct: 354 QITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFE 413

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  KNV+ W++MI+ F+ H  +   + LF +M++  + PN  T+I VL AC H G+VE+
Sbjct: 414 NMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEE 473

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G+  F  M+ +H + P   HY CM+D+  RA  + +A +LI  MPF     +WGSL+++C
Sbjct: 474 GEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSAC 533

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           + +   EL E AAK+L  +EPD+ G  ++LSNIYA  +RW +V   RK +    + KEK+
Sbjct: 534 QVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKA 593

Query: 476 KSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S +EI  +        R H +  EIY KL+++V ++K +GYKP T   L D+E+  K+E
Sbjct: 594 SSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKE 653

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           L++ HSEKLA+ +GL+       IRI+KNLRIC DCHSFMK  S++   E +VRD  RFH
Sbjct: 654 LVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFH 713

Query: 588 HFTNGSCSCWDFW 600
           H + G CSC D+W
Sbjct: 714 HCSGGICSCRDYW 726



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 163/354 (46%), Gaps = 33/354 (9%)

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF ++P       N ++   + +   ++ + L+ N+          F+  S+L A +   
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
                 ++H  A K     + F+ T L+ +YA C  I DA  +F+ M   + V W+ ++ 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+ QN  Y++AL LF   +   ++ +   + +V+ AC     L  G+ +H  +   G+  
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 270 NMFAASSLVDMYAKCGC-------------------------------VVDAYFVFSGIE 298
           +    ++L++MYA CG                                V DA F+F  + 
Sbjct: 256 DSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMI 315

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           E+++V W+ MISG++   +  E + LF++M Q    P++ T +SV+SACSH+G + +  +
Sbjct: 316 ERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA-N 374

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +    V +      +   + +ID+  + G + +A ++  NMP     S W S++
Sbjct: 375 WIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVIS-WSSMI 427


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/546 (38%), Positives = 321/546 (58%), Gaps = 20/546 (3%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + D +    +++ Y + G I+ AR +FDEMP+R +VSW  +I  Y  NG+   A  LF  
Sbjct: 171 DKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEV 230

Query: 125 MLREGKTPYSEFTVSSVLCA-CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M    +  ++   V  +         D+F     H  A   AM     VG      + + 
Sbjct: 231 MPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAM----MVG------FGQH 280

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G++  A  +FE M  R++ TWS+M+  + QNE   EAL  FR     G+  N  +  S++
Sbjct: 281 GMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISIL 340

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
             CA LA    G+++HA + +  F +++FA S+L+ MY KCG +  A  VF+  E K+VV
Sbjct: 341 TVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVV 400

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +WN+MI+G+++H    E + +F+ ++ A + P+  TYI VL+ACS+ G V++G+  F+ M
Sbjct: 401 MWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSM 460

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
               ++     HYSCM+D+LGRAGL+ EA DLI NMP +  A +WG+L+ +CR ++N E+
Sbjct: 461 GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEI 520

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK- 482
           AE+AAK+L  +EP +AG ++LLS+IY +  RWE+ +  RK I    + K    SW+E   
Sbjct: 521 AEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNK 580

Query: 483 --------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
                      +HP  A I + LE+L   + + GY  +    LHDV++ +K + L +HSE
Sbjct: 581 MVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSE 640

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           + A+ +GL+ +  G+PIR+MKNLR+CGDCHS +K  ++I  RE I+RD NRFHHF +G C
Sbjct: 641 RQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLC 700

Query: 595 SCWDFW 600
           SC D+W
Sbjct: 701 SCRDYW 706



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 169/401 (42%), Gaps = 67/401 (16%)

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
            + +N  I +  + G I GAR  FD MP R   S+N +I  Y  N     A+ LF  M  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
                Y+     +++   + +R         + ++   +  +V   T+LL  Y + GL++
Sbjct: 77  RDLGSYN-----ALIAGLSLRRHTLPDAAAALASIP--LPPSVVSFTSLLRGYVRHGLLA 129

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF----------RRAQVLGL----- 232
           DA R+F  MPERN VT++ ++ GF+      EA  LF          R A + G      
Sbjct: 130 DAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGR 189

Query: 233 ------EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF----GSNMFAASSLVDMYA 282
                  +++    +V+   A ++   Q  +V  +L +  F      N  + ++++  Y 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGKV--ILARKLFEVMPDRNEVSWTAMLVGYI 247

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH--------------ARS---------- 318
           + G V DA  +F+ + +  V   N M+ GF +H              AR           
Sbjct: 248 QAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKV 307

Query: 319 -------VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
                  +E +  F +M   G+ PN  ++IS+L+ C+ +   + G+     M++  +   
Sbjct: 308 YEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRC-SFDT 366

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +VF  S +I +  + G + +A   + NM       MW S++
Sbjct: 367 DVFAVSALITMYIKCGNLDKA-KRVFNMFEPKDVVMWNSMI 406



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 44/269 (16%)

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR----------AQVLG 231
           + G I  A   F++MP R   ++++++AG+ +N L + AL LF R          A + G
Sbjct: 29  RAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAG 88

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L   + T+     A A +                    ++ + +SL+  Y + G + DA 
Sbjct: 89  LSLRRHTLPDAAAALASIP----------------LPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY--ISVLSACSH 349
            +F  + E+N V +  ++ GF    R  E   LF++M      P++      ++LS    
Sbjct: 133 RLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEM------PDKDVVARTAMLSGYCQ 186

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G + + ++ FD M K+     NV  ++ MI    + G +  A  L   MP D     W 
Sbjct: 187 AGRITEARALFDEMPKR-----NVVSWTAMISGYAQNGKVILARKLFEVMP-DRNEVSWT 240

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           ++L       ++E AE     LF   PD+
Sbjct: 241 AMLVGYIQAGHVEDAE----DLFNAMPDH 265



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ++  + L  CA       G+  HA ++    + D    + LI  Y KCG +  A++VF+ 
Sbjct: 334 TSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNM 393

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              + +V WN++I  Y  +G  +EA+ +F + LR  +      T   VL AC+    V E
Sbjct: 394 FEPKDVVMWNSMITGYAQHGLGEEALGIFDD-LRLARMAPDGITYIGVLTACSYTGKVKE 452

Query: 154 CKQLHVFALKAAMDRNVFVGTA----LLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
            +++        M+ ++ +G A    ++D+  + GL+ +A  +  +MP E + + W +++
Sbjct: 453 GREIFN---SMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALM 509

Query: 209 A 209
            
Sbjct: 510 G 510


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/575 (36%), Positives = 328/575 (57%), Gaps = 45/575 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       G   H  ++ +GL+ +    N L++ Y KC  +  AR+V DEM
Sbjct: 139 TYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEM 198

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN+++  Y  NGR  +A+ L                                C
Sbjct: 199 PGRDMVSWNSMVAGYAQNGRFNDALKL--------------------------------C 226

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVY-AKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           +++    LK        +G+ L  V    C  +     +F  + E++ ++W+ M+A +V 
Sbjct: 227 REMEDLKLKPDAGT---MGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVN 283

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N +  EA+ L+ + QV G+E +  +ISSV+ AC  L+A + G+++H  + +     N+  
Sbjct: 284 NAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLL 343

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYAKCGC+ +A  VF  +  ++VV W +MIS +    +  + + LF+KM+ +G 
Sbjct: 344 ENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGF 403

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+   ++SVL+ACSH G+V++G+  F+LM  ++ + P + HY+CM+D+LGRAG I EAY
Sbjct: 404 TPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAY 462

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            L   MP +    +WGSLL++CR Y ++ +A +AA  LF + P+ +G ++LLSNIYA   
Sbjct: 463 HLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAG 522

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RW++V   R ++    +KK    S VEI         G ++H +  EIY  L  LV  MK
Sbjct: 523 RWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMK 582

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           +LGY PET+  LHDVE+  K+  L  HSEKLA+ F ++   PG  IRI KN+R+CGDCH 
Sbjct: 583 ELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHV 642

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K  S+IA RE I+RD +RFHHF +G CSC D+W
Sbjct: 643 ATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 177/363 (48%), Gaps = 37/363 (10%)

Query: 53  KVCHAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           K  H+KI I   L+ +      L+  Y+ CG     R +FDE+  + +V +N +I SY  
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG  Q+A+ +F  M  +G  P   +T   VL AC+   +++   Q+H   +K  +D N++
Sbjct: 115 NGLYQDALLVFKTMANQGFYP-DNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLY 173

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +G  L+ +Y KC  +  A RV + MP R+ V+W+SMVAG+ QN  + +AL L R  + L 
Sbjct: 174 IGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLK 233

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L+ +  T+ S++ A    +                                 C  V+   
Sbjct: 234 LKPDAGTMGSLLPAVTNTS---------------------------------CDNVLYVK 260

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F  ++EK+++ WN MI+ +  +A   E + L+ +MQ  G+ P+  +  SVL AC  + 
Sbjct: 261 DMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLS 320

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
               G+   +  V++  + PN+   + +ID+  + G + EA  +   M F    S W S+
Sbjct: 321 AAVLGRRIHEY-VERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVS-WTSM 378

Query: 412 LAS 414
           +++
Sbjct: 379 ISA 381



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 136/278 (48%), Gaps = 23/278 (8%)

Query: 150 DVFECKQLHVFALKAAMDRNVF----VGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           D    K+LH    K  +D+N+     +G  L+  YA CG       +F+ + ++N V ++
Sbjct: 50  DAKTLKKLHS---KILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFN 106

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
            M+  +V N LY++AL++F+     G   + +T   V+ AC+    L  G Q+H  + K 
Sbjct: 107 VMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKL 166

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   N++  + LV MY KC  +  A  V   +  +++V WN+M++G++++ R  + + L 
Sbjct: 167 GLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLC 226

Query: 326 EKMQQAGLHPNEQTYISVLSA-----CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            +M+   L P+  T  S+L A     C ++  V+      D+ VK      ++  ++ MI
Sbjct: 227 REMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVK------DMFVKLKE--KSLISWNVMI 278

Query: 381 DILGRAGLIHEAYDLILNMP---FDATASMWGSLLASC 415
            +     + +EA DL L M     +  A    S+L +C
Sbjct: 279 AVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 341/606 (56%), Gaps = 43/606 (7%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNND--TLTSNILINFYSKCGLISGARKVFDEMP 95
           A ++ C    A    +  H+ I+ +  +N      +N+LI  Y KCG +  AR++F+ MP
Sbjct: 65  ALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMP 124

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP-YSEFTVSSVLCACAAKRDVFEC 154
            R + +W   + +++ NG   EA+  F  M + G+ P    F+V     A      + + 
Sbjct: 125 SRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQG 184

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +++H +A  + +  NV VGTA++ +Y KCG + DA   FE +  +N VTW++M+  +  +
Sbjct: 185 REIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLD 244

Query: 215 ELYEEALILFRRAQ--------------------------------VLGLEYNQFTISSV 242
               EAL LFR                                      L   Q T  +V
Sbjct: 245 GRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTV 304

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           I  CA L+AL QG+ +HA +  T F +N+  +++LV MY KCGC+ +A  VF  ++ K+ 
Sbjct: 305 IDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDE 364

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           + WNT+IS ++ H  S + ++L+++M   G+ P E T++ +LSACSH G+V  G  YF  
Sbjct: 365 ISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYR 424

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M   H + P+V H+ C+ID+LGR G + EA  ++ +MP  A A  W SLL +C+ + +L+
Sbjct: 425 MQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLK 484

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI- 481
               AA Q+    P  +G ++LLSNIYAA  RW++V + RK++    VKK   KSW+EI 
Sbjct: 485 RGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIG 544

Query: 482 -------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
                   G  +HP+  EIY +L K+VEEMK LGY P+T    HD+E+  K++LL+ HSE
Sbjct: 545 DVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSE 604

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           KLA+ +G M +     +RI+KNLR+C DCH+  KF SRI GR+ +VRD  RFH F NGSC
Sbjct: 605 KLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSC 664

Query: 595 SCWDFW 600
           SC D+W
Sbjct: 665 SCRDYW 670



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 158/336 (47%), Gaps = 38/336 (11%)

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH--VFALKAAMDRNVFV 172
           E+E++   I +L   +        ++++  C A   +   ++LH  + +L  +  +  F+
Sbjct: 40  ERESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFL 99

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
              L+++Y KCG +  A  +FESMP RN  TW+  +A F  N  + EAL+ FRR    G 
Sbjct: 100 ANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGE 159

Query: 233 EYNQFTISSVI--CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
             ++ T S ++   A  G AA+ QG+++H     +G   N+   ++++ MY KCG + DA
Sbjct: 160 RPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDA 219

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA------------------- 331
              F  ++ KN V WN M++ +    R  E + LF +M  A                   
Sbjct: 220 RAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGK 279

Query: 332 -------------GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
                         L P + T+++V+  C+ +  +++G++     V+  N   N+   + 
Sbjct: 280 QALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRA-IHARVRATNFDANLLVSNA 338

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           ++ + G+ G + EA D+  +M      S W ++++S
Sbjct: 339 LVHMYGKCGCLDEALDVFHSMKLKDEIS-WNTIISS 373



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 29  NATELSTLQAT----LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           + T+L+  Q T    +  CA   A  +G+  HA++     + + L SN L++ Y KCG +
Sbjct: 290 DTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCL 349

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             A  VF  M  +  +SWNTII SY  +G   +A+ L+  M  +G  P +E T   +L A
Sbjct: 350 DEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKP-TEVTFVGLLSA 408

Query: 145 CAAKRDVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEV 202
           C+    V +     +       +  +V     ++D+  + G +++A  V +SMP + N V
Sbjct: 409 CSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAV 468

Query: 203 TWSSMVA 209
            W S++ 
Sbjct: 469 QWMSLLG 475


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/563 (38%), Positives = 328/563 (58%), Gaps = 16/563 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY-- 109
           GK+ H   + +GL+ D +    L++ Y+K G +  A K+F  MP   +V +N +I  +  
Sbjct: 163 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 222

Query: 110 -TTNGRE--QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAA 165
             T   E   EA+ LF  M   G  P SEFT SS+L AC+   + FEC KQ+H    K  
Sbjct: 223 METMADEFANEAMYLFFEMQSRGMKP-SEFTFSSILKACSTI-EAFECGKQIHAQIFKYN 280

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
           +  + F+G AL+++Y+  G I D  + F S P+ + V+W+S++ G VQN  +E  L LF 
Sbjct: 281 LQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFH 340

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
                G + ++FTIS ++ ACA LAA+  G+Q+HA   KTG G+     +S + MYAKCG
Sbjct: 341 ELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCG 400

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            +  A   F   +  ++V W+ MIS  ++H  + E + LFE M+ +G+ PN  T++ VL 
Sbjct: 401 DIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLV 460

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           ACSH G+VE+G  YF++M K H + PNV H +C++D+LGRAG + EA   I++  F+   
Sbjct: 461 ACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDP 520

Query: 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465
            MW SLL++CR ++  +  +  A+++  +EP+ A +++LL NIY            R L+
Sbjct: 521 VMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLM 580

Query: 466 RDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517
           +D  VKKE   SW+E        + G R+HP    IY +LE+++EE+KKL Y  E     
Sbjct: 581 KDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSD 640

Query: 518 HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRE 577
                 +   ++ +HSEKLA+TFG++ L    P+R+MKNLR C  CH  MK  SR+  RE
Sbjct: 641 ASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENRE 700

Query: 578 TIVRDLNRFHHFTNGSCSCWDFW 600
            I+RD  RFH F +GSCSC D+W
Sbjct: 701 IILRDPIRFHRFRDGSCSCGDYW 723



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 182/330 (55%), Gaps = 8/330 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L  C R      G++ HA I   GL    L +N LI+ Y KCG I  AR VF+  
Sbjct: 43  TFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESA 102

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK-RDVFE 153
            +   VSWN++I  Y   G   E + L + MLR G    + + + S L AC +      E
Sbjct: 103 DELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLN-LNSYALGSALKACGSNFSSSIE 161

Query: 154 C-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           C K LH  A+K  +D +V VGTALLD YAK G + DA+++F+ MP+ N V +++M+AGF+
Sbjct: 162 CGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFL 221

Query: 213 Q-----NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           Q     +E   EA+ LF   Q  G++ ++FT SS++ AC+ + A   GKQ+HA + K   
Sbjct: 222 QMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNL 281

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            S+ F  ++LV++Y+  G + D    F    + +VV W ++I G  ++ +    + LF +
Sbjct: 282 QSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHE 341

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +  +G  P+E T   +LSAC+++  V+ G+
Sbjct: 342 LLFSGRKPDEFTISIMLSACANLAAVKSGE 371



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 178/362 (49%), Gaps = 12/362 (3%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP+R +VSWN++I  YT  G   E + LF    R       +FT S+ L  C    D+  
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLF-KEARMSDLRLDKFTFSNALSVCGRTLDLRL 59

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H     + +   V +  +L+D+Y KCG I  A  VFES  E + V+W+S++AG+V+
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICAC-AGLAALIQ-GKQVHAVLCKTGFGSNM 271
               +E L L  +    GL  N + + S + AC +  ++ I+ GK +H    K G   ++
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV-----EVMILFE 326
              ++L+D YAK G + DA  +F  + + NVV++N MI+GF +          E M LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +MQ  G+ P+E T+ S+L ACS I   E GK     + K +N+  + F  + ++++   +
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELYSLS 298

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLL 444
           G I +      + P     S W SL+         E       +L   G +PD     ++
Sbjct: 299 GSIEDGLKCFHSTPKLDVVS-WTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIM 357

Query: 445 LS 446
           LS
Sbjct: 358 LS 359



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +CA   A   G+  HA  I  G+ N T+  N  I  Y+KCG I  A   F E 
Sbjct: 353 TISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET 412

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
               IVSW+ +I S   +G  +EAV LF  M   G  P +  T   VL AC+    V E 
Sbjct: 413 KNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAP-NHITFLGVLVACSHGGLVEEG 471

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA-SRVFESMPERNEVTWSSMVA 209
            +   +      +  NV     ++D+  + G +++A S + +S  E + V W S+++
Sbjct: 472 LRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLS 528


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/549 (38%), Positives = 328/549 (59%), Gaps = 14/549 (2%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           ++ D  T N ++N Y   G ++ A ++F +MP R ++SW +II     NG+  +A+  F 
Sbjct: 181 VDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFK 240

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV----FALKAAMDRNVFVGTALLDV 179
           NM+       S  T+   L A A   D +   Q+H     F     +D   FV  +L+  
Sbjct: 241 NMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDE--FVSASLVTF 298

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YA C  + DA +VF     +N V W++++ G   N+ + EAL +F       +  N+ + 
Sbjct: 299 YASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSF 358

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           +S + +C GL  L +G+ +HA   K G  + ++  +SLV MY+KCG + DA  VF GI E
Sbjct: 359 TSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICE 418

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           KNVV WN++I G ++H      ++LF++M + G+  +E T   +LSACS  GM++K + +
Sbjct: 419 KNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCF 478

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F    ++ ++   V HY+CM+D+LGR G + EA  L  +MP +A + +W  LL++CR + 
Sbjct: 479 FGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHS 538

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           +L++AE AAK++F MEPD +  ++LLSN+YA++RRW EVAR R  ++ + + K+   SW+
Sbjct: 539 SLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWI 598

Query: 480 EIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
            +KG         R+HP   EIY KL  L  ++++LGY P+ +  LHDVE  + +E+L +
Sbjct: 599 TLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNEEMLSY 658

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSE+LA+ FGL+    G  I IMKNLR+CGDCH+ +   ++I  RE +VRD +RFHHF N
Sbjct: 659 HSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFKN 718

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 719 GICSCGDYW 727



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 193/413 (46%), Gaps = 43/413 (10%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV--SSV 141
           +  AR VF+++P   +  +  ++ +Y  N    EA+ LF  +    K   S  +V  +S+
Sbjct: 73  LDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASI 132

Query: 142 LCA--CAAKRDVFECKQ---------LH-------------VFALKAAMDRNVFVGTALL 177
           +C     A +   E  Q         +H              F     +D++V    A++
Sbjct: 133 ICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMV 192

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           + Y   G ++DA R+F  MP R+ ++W+S++ G  +N    +AL  F+   ++G      
Sbjct: 193 NGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFK--NMVGFSGVGI 250

Query: 238 TISSVICACAGLAALIQ---GKQVHAVLCKTGF--GSNMFAASSLVDMYAKCGCVVDAYF 292
           + ++++C  +  A ++    G Q+H  + K GF  G + F ++SLV  YA C  + DA  
Sbjct: 251 SSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACK 310

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF     KNVV+W  +++G   + + VE + +F +M +  + PNE ++ S L++C  +  
Sbjct: 311 VFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLED 370

Query: 353 VEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +EKG+      +K    L N V+  + ++ +  + G I +A  +   +      S W S+
Sbjct: 371 LEKGRVIHAAGIKMG--LENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVS-WNSV 427

Query: 412 LASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAANRRWEEVARAR 462
           +  C  +     A +  K++   G+E D     + L+ + +A  R   + +AR
Sbjct: 428 IVGCAQHGCGTWALVLFKEMLREGVESD----EITLTGLLSACSRSGMLQKAR 476



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+  + L SC       +G+V HA  I MGL N   T N L+  YSKCG I  A  VF  
Sbjct: 356 SSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKG 415

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +VSWN++I     +G    A+ LF  MLREG     E T++ +L AC+    + +
Sbjct: 416 ICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREG-VESDEITLTGLLSACSRSGMLQK 474

Query: 154 CKQLH-VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTW 204
            +     FA K +M   V     ++DV  +CG + +A  +  SMP E N + W
Sbjct: 475 ARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVW 527


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/563 (38%), Positives = 328/563 (58%), Gaps = 16/563 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY-- 109
           GK+ H   + +GL+ D +    L++ Y+K G +  A K+F  MP   +V +N +I  +  
Sbjct: 242 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 301

Query: 110 -TTNGRE--QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAA 165
             T   E   EA+ LF  M   G  P SEFT SS+L AC+   + FEC KQ+H    K  
Sbjct: 302 METMADEFANEAMYLFFEMQSRGMKP-SEFTFSSILKACSTI-EAFECGKQIHAQIFKYN 359

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
           +  + F+G AL+++Y+  G I D  + F S P+ + V+W+S++ G VQN  +E  L LF 
Sbjct: 360 LQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFH 419

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
                G + ++FTIS ++ ACA LAA+  G+Q+HA   KTG G+     +S + MYAKCG
Sbjct: 420 ELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCG 479

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            +  A   F   +  ++V W+ MIS  ++H  + E + LFE M+ +G+ PN  T++ VL 
Sbjct: 480 DIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLV 539

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           ACSH G+VE+G  YF++M K H + PNV H +C++D+LGRAG + EA   I++  F+   
Sbjct: 540 ACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDP 599

Query: 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465
            MW SLL++CR ++  +  +  A+++  +EP+ A +++LL NIY            R L+
Sbjct: 600 VMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLM 659

Query: 466 RDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517
           +D  VKKE   SW+E        + G R+HP    IY +LE+++EE+KKL Y  E     
Sbjct: 660 KDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSD 719

Query: 518 HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRE 577
                 +   ++ +HSEKLA+TFG++ L    P+R+MKNLR C  CH  MK  SR+  RE
Sbjct: 720 ASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENRE 779

Query: 578 TIVRDLNRFHHFTNGSCSCWDFW 600
            I+RD  RFH F +GSCSC D+W
Sbjct: 780 IILRDPIRFHRFRDGSCSCGDYW 802



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 182/330 (55%), Gaps = 8/330 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L  C R      G++ HA I   GL    L +N LI+ Y KCG I  AR VF+  
Sbjct: 122 TFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESA 181

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK-RDVFE 153
            +   VSWN++I  Y   G   E + L + MLR G    + + + S L AC +      E
Sbjct: 182 DELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLN-LNSYALGSALKACGSNFSSSIE 240

Query: 154 C-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           C K LH  A+K  +D +V VGTALLD YAK G + DA+++F+ MP+ N V +++M+AGF+
Sbjct: 241 CGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFL 300

Query: 213 Q-----NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           Q     +E   EA+ LF   Q  G++ ++FT SS++ AC+ + A   GKQ+HA + K   
Sbjct: 301 QMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNL 360

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            S+ F  ++LV++Y+  G + D    F    + +VV W ++I G  ++ +    + LF +
Sbjct: 361 QSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHE 420

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +  +G  P+E T   +LSAC+++  V+ G+
Sbjct: 421 LLFSGRKPDEFTISIMLSACANLAAVKSGE 450



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 203/421 (48%), Gaps = 12/421 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +Q   R  + + GK+ H  +I           N L+  Y KCG    A+K+FD M
Sbjct: 21  TYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRM 80

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN++I  YT  G   E + LF    R       +FT S+ L  C    D+   
Sbjct: 81  PKRNVVSWNSLISGYTQMGFYHEVMNLF-KEARMSDLRLDKFTFSNALSVCGRTLDLRLG 139

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H     + +   V +  +L+D+Y KCG I  A  VFES  E + V+W+S++AG+V+ 
Sbjct: 140 RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 199

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICAC-AGLAALIQ-GKQVHAVLCKTGFGSNMF 272
              +E L L  +    GL  N + + S + AC +  ++ I+ GK +H    K G   ++ 
Sbjct: 200 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 259

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV-----EVMILFEK 327
             ++L+D YAK G + DA  +F  + + NVV++N MI+GF +          E M LF +
Sbjct: 260 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 319

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQ  G+ P+E T+ S+L ACS I   E GK     + K +N+  + F  + ++++   +G
Sbjct: 320 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELYSLSG 378

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLL 445
            I +      + P     S W SL+         E       +L   G +PD     ++L
Sbjct: 379 SIEDGLKCFHSTPKLDVVS-WTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIML 437

Query: 446 S 446
           S
Sbjct: 438 S 438



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 144/284 (50%), Gaps = 4/284 (1%)

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P    T + ++        +   K  H+  +K      +F+   LL +Y KCG    A +
Sbjct: 16  PLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKK 75

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +F+ MP+RN V+W+S+++G+ Q   Y E + LF+ A++  L  ++FT S+ +  C     
Sbjct: 76  LFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLD 135

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+ +HA++  +G G  +   +SL+DMY KCG +  A  VF   +E + V WN++I+G
Sbjct: 136 LRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAG 195

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC--SHIGMVEKGKSYFDLMVKQHNV 369
           + R   + E++ L  KM + GL+ N     S L AC  +    +E GK      VK    
Sbjct: 196 YVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 255

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           L +V   + ++D   + G + +A  +   MP D    M+ +++A
Sbjct: 256 L-DVVVGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIA 297



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +CA   A   G+  HA  I  G+ N T+  N  I  Y+KCG I  A   F E 
Sbjct: 432 TISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET 491

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
               IVSW+ +I S   +G  +EAV LF  M   G  P +  T   VL AC+    V E 
Sbjct: 492 KNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAP-NHITFLGVLVACSHGGLVEEG 550

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA-SRVFESMPERNEVTWSSMVA 209
            +   +      +  NV     ++D+  + G +++A S + +S  E + V W S+++
Sbjct: 551 LRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLS 607



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           LGL  +  T + ++       +LI GK  H  + KT F   +F  ++L+ MY KCG    
Sbjct: 13  LGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDV 72

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  +F  + ++NVV WN++ISG+++     EVM LF++ + + L  ++ T+ + LS C  
Sbjct: 73  AKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGR 132

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
              +  G+    L+       P V   + +ID+  + G I  A  L+     +  +  W 
Sbjct: 133 TLDLRLGRLIHALITVSGLGGP-VLLTNSLIDMYCKCGRIDWAR-LVFESADELDSVSWN 190

Query: 410 SLLAS-CRNYRNLELAEIAAKQL 431
           SL+A   R   N E+  +  K L
Sbjct: 191 SLIAGYVRIGSNDEMLRLLVKML 213


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 346/621 (55%), Gaps = 51/621 (8%)

Query: 26  ANANATELSTLQATLQSCAR------ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
           A     +  T  A L++ AR        AP R    HA ++ +G+  +   ++ L+  Y+
Sbjct: 12  ARGGRPDAYTFPALLKAVARAAGGSGSAAPARA--VHAHVVRLGMGRNAHVASSLVAAYT 69

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
             G  + AR +  E      V+WN +I  +   GR  E+   F++M R G  P +  T  
Sbjct: 70  AGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAP-TPVTYV 126

Query: 140 SVLCACA-AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC--------------- 183
           SVL AC    RDV    Q+H   + + +  ++ V  AL+D+YA+C               
Sbjct: 127 SVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQV 186

Query: 184 ----------------GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
                           G + +A  +F+ MPER+ V+W++M+ G+V    + EAL +FR  
Sbjct: 187 RSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREM 246

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q   +  ++FT+ SVI ACA L AL  G+ V   + + G   + F  ++L+DMY+KCG +
Sbjct: 247 QYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSI 306

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  VF G+  ++   W  +I G + +    E + +F +M +    P+E T+I VL+AC
Sbjct: 307 ERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTAC 366

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           +H G+V+KG+ +F  M++ +N+ PNV HY C+ID+LGRAG I EA D I  MP    +++
Sbjct: 367 THAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTI 426

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           WG+LLA+CR + N E+ E+ A++L  ++P+N+  ++LLSNIYA   RWE+V R R  I +
Sbjct: 427 WGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIME 486

Query: 468 SEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             +KKE   S +E        + G ++HP   EIYSKLE ++ ++  +GY P+      +
Sbjct: 487 KGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVE 546

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           V +  K+++L  HSEKLA+ F L+   P   IRI+KNLR+C DCH+ +K  SR+ GRE +
Sbjct: 547 VAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVV 606

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           VRD  RFHHF +G CSC D+W
Sbjct: 607 VRDRTRFHHFRHGFCSCKDYW 627



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 159/358 (44%), Gaps = 37/358 (10%)

Query: 18  SSAIASASANANATELSTLQATLQSCAR-ERAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
            S +  A A A  T + T  + L +C +  R  + G   H +++G G+  D    N L++
Sbjct: 108 GSFVDMARAGAAPTPV-TYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVD 166

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF-------------- 122
            Y++C  +  A KVFD M  R +VSW +++      G+  EA  LF              
Sbjct: 167 MYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAM 226

Query: 123 -------------INMLRE---GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
                        + M RE         EFT+ SV+ ACA    +   + + V+  +  +
Sbjct: 227 IDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGI 286

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
             + FVG AL+D+Y+KCG I  A  VF+ M  R++ TW++++ G   N   EEA+ +F R
Sbjct: 287 KMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHR 346

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCG 285
              +    ++ T   V+ AC     + +G++    + +      N+     ++D+  + G
Sbjct: 347 MIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAG 406

Query: 286 CVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYI 341
            + +A      +    N  +W T+++    H  S    ++ E++ +  L P N   YI
Sbjct: 407 KITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLE--LDPENSMVYI 462


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/622 (37%), Positives = 335/622 (53%), Gaps = 58/622 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L  CA       GK  H   +   +  +    N L++ Y+K G++  A  VF  M
Sbjct: 231 TLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNM 290

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALF-------------------------------- 122
           P + +VSWN ++  Y+  GR ++AV LF                                
Sbjct: 291 PVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 123 ---INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD--------RNVF 171
                ML  G  P +E T+ SVL  CA+   +   K++H +A+K  MD         N+ 
Sbjct: 351 GVCRQMLSSGIKP-NEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMV 409

Query: 172 VGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRR--A 227
           +   L+D+YAKC  +  A  +F+S+   ER+ VTW+ M+ G+ Q+    +AL L      
Sbjct: 410 I-NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS-NMFAASSLVDMYAKCGC 286
           +      N FTIS  + ACA LAAL  GKQ+HA   +    +  +F ++ L+DMYAKCG 
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGD 528

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + DA  VF  + EKN V W ++++G+  H    E + +FE+M++ G   +  T + VL A
Sbjct: 529 IGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYA 588

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CSH GM+++G  YF+ M     V P   HY+C++D+LGRAG ++ A  LI  MP +    
Sbjct: 589 CSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +W +LL+ CR +  +EL E AAK++  +  +N G++ LLSN+YA   RW++V R R L+R
Sbjct: 649 VWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMR 708

Query: 467 DSEVKKEKSKSWVE-IK-------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
              +KK    SWVE IK       G + HP   EIY  L   ++ +K +GY PET   LH
Sbjct: 709 HKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALH 768

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           DV+D  K +LL  HSEKLAL +G++    G  IRI KNLR+CGDCH+   + SRI   E 
Sbjct: 769 DVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEI 828

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           I+RD +RFHHF NG CSC  +W
Sbjct: 829 ILRDSSRFHHFKNGLCSCKGYW 850



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/427 (31%), Positives = 213/427 (49%), Gaps = 51/427 (11%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T     ++C  E + VR G   HA     G  ++    N L+  YS+CG +S ARKVFDE
Sbjct: 129 TFPFVFKACG-EISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDE 187

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP   +VSWN+II SY   G+ + A+ +F  M  E      + T+ +VL  CA+      
Sbjct: 188 MPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSL 247

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ H FA+ + M +N+FVG  L+D+YAK G++ +A+ VF +MP ++ V+W++MVAG+ Q
Sbjct: 248 GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQ 307

Query: 214 NELYEEALILFRRAQ-----------------------------------VLGLEYNQFT 238
              +E+A+ LF + Q                                     G++ N+ T
Sbjct: 308 IGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367

Query: 239 ISSVICACAGLAALIQGKQVHAV-------LCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           + SV+  CA + AL+ GK++H         L K G G      + L+DMYAKC  V  A 
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIAR 427

Query: 292 FVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNEQTYISVLSAC 347
            +F  +  +E++VV W  MI G+S+H  + + + L  +M  +     PN  T    L AC
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487

Query: 348 SHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           + +  +  GK      ++ Q N +P +F  +C+ID+  + G I +A  +  NM  +    
Sbjct: 488 ASLAALSIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEV 545

Query: 407 MWGSLLA 413
            W SL+ 
Sbjct: 546 TWTSLMT 552



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 164/343 (47%), Gaps = 40/343 (11%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR--CIVSWNTIIGSYT 110
           K+ H K++  G+    LTS+ LI+ Y   G +S A  +    P     +  WN++I SY 
Sbjct: 45  KLIHQKLLSFGILTLNLTSH-LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NGR  + ++ F  M     TP   +T   V  AC     V      H  +       NV
Sbjct: 104 NNGRANKCLSSFCLMHSLSWTP-DNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNV 162

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQV 229
           FVG AL+ +Y++CG +SDA +VF+ MP  + V+W+S++  + +    + AL +F +    
Sbjct: 163 FVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNE 222

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G   +  T+ +V+  CA +     GKQ H     +    NMF  + LVDMYAK G + +
Sbjct: 223 FGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDE 282

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ------------------- 330
           A  VFS +  K+VV WN M++G+S+  R  + + LFE+MQ+                   
Sbjct: 283 ANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQ 342

Query: 331 ----------------AGLHPNEQTYISVLSACSHIGMVEKGK 357
                           +G+ PNE T ISVLS C+ +G +  GK
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 120/241 (49%), Gaps = 5/241 (2%)

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           L+  Y   G +S A  +    P  +     W+S++  +  N    + L  F     L   
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            + +T   V  AC  ++++  G   HA+   TGF SN+F  ++LV MY++CG + DA  V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGM 352
           F  +   +VV WN++I  +++  +    + +F KM  + G  P++ T ++VL  C+ +G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
              GK +    V    ++ N+F  +C++D+  + G++ EA  +  NMP     S W +++
Sbjct: 245 RSLGKQFHGFAVTS-EMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS-WNAMV 302

Query: 413 A 413
           A
Sbjct: 303 A 303


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/598 (37%), Positives = 344/598 (57%), Gaps = 15/598 (2%)

Query: 15  SFSSSAIASASANANATELS--TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN 72
           +FSS   A  S+   +  ++   L   LQSC+   + ++         G+ + N  +T  
Sbjct: 16  NFSSLLHAHGSSTGQSLPITKQALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQL 75

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
           +     +  G +S AR++FDEM +     WNTI+  Y  NG   +AV+++  M   G  P
Sbjct: 76  LTSL--TLLGDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRP 133

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
              FT   V+ ACA   +++    +H   +K  ++    V T L+ +Y K G +  A  +
Sbjct: 134 -DPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFL 192

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F SM ER+ V W++++A  VQ     +AL  FR   + G++ +  TI S + AC  L  L
Sbjct: 193 FGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCL 252

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             G++++    + G  SN+   ++ +DM AKCG +  A  +F  + ++NV+ W+T+I G+
Sbjct: 253 ETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGY 312

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK--QHNVL 370
           + +  S + + LF +M+  G+ PN  T+++VLSACSH G V +G  YF+ M +    N+ 
Sbjct: 313 AVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQ 372

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P   HY+CM+D+LGR+G + EAY+ I  MP +A   +WG+LL +C  ++N++L +  A  
Sbjct: 373 PRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADL 432

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK------ 484
           LF + P+ A  H+LLSN+YAA  RW  V + R+ ++    +K  + S VE  G+      
Sbjct: 433 LFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYG 492

Query: 485 --RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
             ++HP+ A I +KLE L+++MK +GY PET+   HDVED  K+  L  HSEKLA+ F L
Sbjct: 493 GDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSL 552

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +   P  PIR+MKNLRICGDCH+F K  SRI  RE I+RD NRFHHF NG CSC DFW
Sbjct: 553 INGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/609 (35%), Positives = 355/609 (58%), Gaps = 23/609 (3%)

Query: 9   HKF-----YYKSFSSSAIASASANANATEL-STLQATLQSCARERAPVRGKVCHAKIIGM 62
           HKF      Y SF+S    +  A +N   L S L   + +C+   +    +  H ++I  
Sbjct: 11  HKFISSIRLYNSFASQLSPTFHAFSNVDSLVSALITAISTCS---SISYCRALHCRVIKS 67

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
              N     + L++ Y + G    A ++FDE+P + +VSWN++I  ++        + L 
Sbjct: 68  VNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLL 127

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             M  E     +E TV  V+ ACA   ++   K +H  A+K+ M   V V  +L+++Y K
Sbjct: 128 FRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGK 187

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL---ILFRRAQVLGLEYNQFTI 239
           CG +  A  +FE M  ++ V+W+SMVA  V   L E+ +   I+ RRA   G+  +Q T+
Sbjct: 188 CGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRA---GINSDQATV 244

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            S++ AC  L      + VH  +   G   N+  A++L+D+YAK G + D+  VF G+  
Sbjct: 245 VSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMIN 304

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
            + V W  M+S ++ H R  E +  FE M + G+ P+  T+  +LSACSH G+VE+GK+Y
Sbjct: 305 PDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNY 364

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F +M + + V   V HYSCM+D+LGR+G +++AY LI +MP +  + +WG+L+ +CR   
Sbjct: 365 FKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRG 424

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N+EL +  A++LF ++P ++ N++ LSN+Y+A  +W + ++ R L+++  + +    S++
Sbjct: 425 NIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYI 484

Query: 480 E--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E        + G ++HP   +IY+KLE+LV + +++G+  +TE+ LHDV++  K++L+  
Sbjct: 485 EHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINK 544

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+ FGL+    G+P+ I KN+RICGDCH F K  S I  R  I+RD  RFHHFTN
Sbjct: 545 HSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTN 604

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 605 GLCSCGDYW 613


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 347/607 (57%), Gaps = 52/607 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CA+  +   GK  HA++I      D   ++ ++  Y+KCG    AR+VF  
Sbjct: 295 TTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSS 354

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  VSW  +IG +   G   E++ LF N +R       +F +++++  C+ + D+  
Sbjct: 355 LRDRNTVSWTVLIGGFLQYGCFSESLELF-NQMRAELMTVDQFALATIISGCSNRMDMCL 413

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-------------- 199
            +QLH  +LK+   R V +  +L+ +YAKCG + +A  +F SM ER              
Sbjct: 414 ARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQ 473

Query: 200 -----------------NEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISS 241
                            N +TW++M+  ++Q+   E+ L ++        +  +  T  +
Sbjct: 474 VGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVT 533

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           +   CA + A   G Q+     K G   +    ++++ MY+KCG + +A  +F  +  K+
Sbjct: 534 LFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKD 593

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +V WN MI+G+S+H    + + +F+ M + G  P+  +Y++VLS+CSH G+V++GK YFD
Sbjct: 594 LVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFD 653

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           ++ + HNV P + H+SCM+D+L RAG + EA +LI  MP   TA +WG+LL++C+ + N 
Sbjct: 654 MLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNN 713

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ELAE+AAK LF ++  ++G ++LL+ IYA   +  + A+ RKL+RD  +KK    SW+E+
Sbjct: 714 ELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEV 773

Query: 482 KGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           K K         +HP++  I  KL++L+E++ +LGY   TE        S + E  IHHS
Sbjct: 774 KNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGY-VRTE--------SLRSE--IHHS 822

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FG+M L   +PI IMKNLRICGDCH+ +K  S + GRE ++RD  RFHHF  GS
Sbjct: 823 EKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGS 882

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 883 CSCGDYW 889



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 172/305 (56%), Gaps = 5/305 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y+K   +  A ++F+ MP+R +VSWN ++ + + +GR +EA+++ ++M   G  
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRG-V 290

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
                T +S L ACA    +   KQLH   +++    + +V +A++++YAKCG   +A R
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF S+ +RN V+W+ ++ GF+Q   + E+L LF + +   +  +QF ++++I  C+    
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           +   +Q+H++  K+G    +  ++SL+ MYAKCG + +A  +FS +EE+++V W  M++ 
Sbjct: 411 MCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTA 470

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +S+     +    F+ M       N  T+ ++L A    G  E G   +  M+ + +V+P
Sbjct: 471 YSQVGNIGKAREFFDGMSTR----NVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIP 526

Query: 372 NVFHY 376
           +   Y
Sbjct: 527 DWVTY 531



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 167/334 (50%), Gaps = 40/334 (11%)

Query: 47  RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           R  +RG +    +I         T NI++N Y+K G +S A ++F  MP+R + SWNT++
Sbjct: 83  RGLLRGDITEPNVI---------THNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLM 133

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
             Y  +GR  +A+  F++M R G +  + FT    + +C A        QL     K   
Sbjct: 134 SGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGF 193

Query: 167 DRNVFVGTALLDVYAKCGLISDASR-------------------------------VFES 195
             +  V T ++D++ +CG +  AS+                               +FES
Sbjct: 194 QGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFES 253

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           MPER+ V+W+ MV+   Q+    EAL +       G+  +  T +S + ACA L++L  G
Sbjct: 254 MPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWG 313

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           KQ+HA + ++    + + AS++V++YAKCGC  +A  VFS + ++N V W  +I GF ++
Sbjct: 314 KQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQY 373

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
               E + LF +M+   +  ++    +++S CS+
Sbjct: 374 GCFSESLELFNQMRAELMTVDQFALATIISGCSN 407


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/600 (35%), Positives = 336/600 (56%), Gaps = 34/600 (5%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
            TL + L +C++      G+  H   +  G L  ++     L++ Y  C      R VFD 
Sbjct: 536  TLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDG 595

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            + +R +  WN ++  Y  N  + +A+ LF+ M+ E +   +  T +SVL AC   +   +
Sbjct: 596  VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD 655

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             + +H + +K    ++ +V  AL+D+Y++ G +  +  +F  M +R+ V+W++M+ G + 
Sbjct: 656  KEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIV 715

Query: 214  NELYEEALILFRRAQV------------------LGLEYNQFTISSVICACAGLAALIQG 255
               Y++AL L    Q                   +  + N  T+ +V+  CA LAAL +G
Sbjct: 716  CGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKG 775

Query: 256  KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
            K++HA   K     ++   S+LVDMYAKCGC+  A  VF  +  +NV+ WN +I  +  H
Sbjct: 776  KEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMH 835

Query: 316  ARSVEVMILFEKMQQAG------LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
             +  E + LF  M   G      + PNE TYI++ +ACSH GMV++G   F  M   H V
Sbjct: 836  GKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGV 895

Query: 370  LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT-ASMWGSLLASCRNYRNLELAEIAA 428
             P   HY+C++D+LGR+G + EAY+LI  MP +      W SLL +CR ++++E  EIAA
Sbjct: 896  EPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAA 955

Query: 429  KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-------- 480
            K LF +EP+ A +++L+SNIY++   W++    RK +++  V+KE   SW+E        
Sbjct: 956  KHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKF 1015

Query: 481  IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
            + G  +HP+  E++  LE L + M+K GY P+    LH+V+D  K+ +L  HSE+LA+ F
Sbjct: 1016 LSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAF 1075

Query: 541  GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            GL+   PG  IR+ KNLR+C DCH   K  S+I  RE I+RD+ RFHHF NG+CSC D+W
Sbjct: 1076 GLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 194/385 (50%), Gaps = 9/385 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKII--GMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
             A L++ A       GK  HA +   G    +    +N L+N Y KCG ++ AR+VFD+
Sbjct: 333 FPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDD 392

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVF 152
           +P R  VSWN++I +       + ++ LF  ML E   P S FT+ SV  AC+  R  V 
Sbjct: 393 IPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTS-FTLVSVAHACSHVRGGVR 451

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             KQ+H + L+   D   +   AL+ +YA+ G ++DA  +F     ++ V+W+++++   
Sbjct: 452 LGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLS 510

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNM 271
           QN+ +EEAL+      V G+  +  T++SV+ AC+ L  L  G+++H    + G    N 
Sbjct: 511 QNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENS 570

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF-EKMQQ 330
           F  ++LVDMY  C        VF G+  + V +WN +++G++R+    + + LF E + +
Sbjct: 571 FVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISE 630

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           +   PN  T+ SVL AC    +    +     +VK+     + +  + ++D+  R G + 
Sbjct: 631 SEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKR-GFGKDKYVQNALMDMYSRMGRVE 689

Query: 391 EAYDLILNMPFDATASMWGSLLASC 415
            +  +   M      S W +++  C
Sbjct: 690 ISKTIFGRMNKRDIVS-WNTMITGC 713



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 167/322 (51%), Gaps = 6/322 (1%)

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R    W  ++ S T +   ++A++ +  ML         F   +VL A AA  D+   K
Sbjct: 292 RRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAP-PDNFAFPAVLKAAAAVHDLCLGK 350

Query: 156 QLH--VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
           Q+H  VF    A   +V V  +L+++Y KCG ++ A +VF+ +P+R+ V+W+SM+A   +
Sbjct: 351 QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNMF 272
            E +E +L LFR      ++   FT+ SV  AC+ +   ++ GKQVHA   + G     +
Sbjct: 411 FEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTY 469

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++LV MYA+ G V DA  +F   + K++V WNT+IS  S++ R  E ++    M   G
Sbjct: 470 TNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+  T  SVL ACS +  +  G+      ++  +++ N F  + ++D+        + 
Sbjct: 530 VRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKG 589

Query: 393 YDLILNMPFDATASMWGSLLAS 414
             L+ +     T ++W +LLA 
Sbjct: 590 R-LVFDGVVRRTVAVWNALLAG 610



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 174/385 (45%), Gaps = 63/385 (16%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  + L +C R +     +  H  I+  G   D    N L++ YS+ G +  ++ +F  
Sbjct: 638 TTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGR 697

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR---------------EGKTPY--SEF 136
           M +R IVSWNT+I      GR  +A+ L   M R               +G  P+  +  
Sbjct: 698 MNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSV 757

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T+ +VL  CAA   + + K++H +A+K  +  +V VG+AL+D+YAKCG ++ ASRVF+ M
Sbjct: 758 TLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQM 817

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG------LEYNQFTISSVICACAGLA 250
           P RN +TW+ ++  +  +   EEAL LFR     G      +  N+ T  ++  AC+   
Sbjct: 818 PIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSG 877

Query: 251 ALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
            + +G  + H +    G        + LVD+  + G V +AY            L NTM 
Sbjct: 878 MVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAY-----------ELINTMP 926

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           S  ++                         + S+L AC     VE G    ++  K   V
Sbjct: 927 SNLNK----------------------VDAWSSLLGACRIHQSVEFG----EIAAKHLFV 960

Query: 370 L-PNVF-HYSCMIDILGRAGLIHEA 392
           L PNV  HY  M +I   AGL  +A
Sbjct: 961 LEPNVASHYVLMSNIYSSAGLWDQA 985



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 123/272 (45%), Gaps = 14/272 (5%)

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           R+   W  ++     +  + +A+  +          + F   +V+ A A +  L  GKQ+
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 259 HAVLCKTGFG--SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           HA + K G    S++  A+SLV+MY KCG +  A  VF  I +++ V WN+MI+   R  
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI-GMVEKGKSYFDLMVKQHNVLPNVFH 375
                + LF  M    + P   T +SV  ACSH+ G V  GK      ++  ++    + 
Sbjct: 413 EWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL--RTYT 470

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASM-WGSLLASCRNYRNLELAEIAAKQLF-- 432
            + ++ +  R G +++A  L     FD    + W ++++S       E A +    +   
Sbjct: 471 NNALVTMYARLGRVNDAKALF--GVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVD 528

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
           G+ PD     + L+++  A  + E +   R++
Sbjct: 529 GVRPDG----VTLASVLPACSQLERLRIGREI 556


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/588 (34%), Positives = 341/588 (57%), Gaps = 46/588 (7%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+++  GL +      +L++ Y++  L+  AR+ FD+ P+R +  ++ ++ + + +   
Sbjct: 24  HARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDP 83

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +  + L   ML +       F ++S+  A    R +   +QLH     +    +  V ++
Sbjct: 84  ELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSS 143

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL--- 232
           L+D+Y KCG+  DA +VF+S+  +N V W+++++G+  N    EAL LF+     GL   
Sbjct: 144 LIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTW 203

Query: 233 -----------------------------EYNQFTISSVICACAGLAALIQGKQVHAVLC 263
                                         ++ F +++VI   A LAAL+ G+Q+H  + 
Sbjct: 204 TALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVM 263

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           + GF S+M   ++LVDMY+KC  +  A  VF GI  ++V+ W T++ G ++H R+ EV  
Sbjct: 264 RLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFA 323

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           L+ +M  AG+ PNE T++ ++ ACSH G+V+KG+  FD M +++ + P V HY+C +D+L
Sbjct: 324 LYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLL 383

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R+G + EA  LI  MP++   + WG+LL++C+ + + ++    A  L  + P +   ++
Sbjct: 384 SRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYI 443

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRI-----------AE 492
           LLSN+YA N +W+ VA+ RK++ + E++K    SWVE  G+ +  RI            E
Sbjct: 444 LLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVE-AGRES--RIFHAGEVPLDVGEE 500

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           I   LE+LV EM+K GY P+T   +HD+E+  K++ L  HSE+LA+ FG++   PG  IR
Sbjct: 501 ITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIR 560

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++KNLR+CGDCH+ MKF S IA R+ IVRD +RFHHF +G+CSC +FW
Sbjct: 561 VVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 144/312 (46%), Gaps = 34/312 (10%)

Query: 38  ATLQSCA-RERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           A+L S A R R+   G+  HA       + D +  + LI+ Y KCG+   ARKVFD +  
Sbjct: 107 ASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGV 166

Query: 97  RCIVSWNTIIGSYTTNGREQEAV-------------------------------ALFINM 125
           +  V W  +I  Y +NG   EA+                                LF+ M
Sbjct: 167 KNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEM 226

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
            R+    +  F +++V+   A    +   +QLH F ++     ++ VG AL+D+Y+KC  
Sbjct: 227 RRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSD 286

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I  A  VFE +  R+ ++W++++ G  Q+   EE   L+ R  + G++ N+ T   +I A
Sbjct: 287 IHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYA 346

Query: 246 CAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVV 303
           C+    + +G+Q+   + +  G    +   +  +D+ ++ G + +A  + + +  E +  
Sbjct: 347 CSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEA 406

Query: 304 LWNTMISGFSRH 315
            W  ++S   +H
Sbjct: 407 TWGALLSACKKH 418



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 1/180 (0%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +++H   LK  +         L+  YA+  L+ DA R F+  P R+   +S+++A    +
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 215 ELYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
              E  L L RR      L  + F ++S+  A   L +L  G+Q+HA    + + ++   
Sbjct: 81  SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVV 140

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            SSL+DMY KCG   DA  VF  I  KN V+W  +ISG++ +  + E + LF+ M   GL
Sbjct: 141 KSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL 200



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L   +   A   A V G+  H  ++ +G  +  +  N L++ YSKC  I  AR+VF+ +
Sbjct: 238 VLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGI 297

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++SW TI+     +GR +E  AL+  ML  G  P +E T   ++ AC+    V + 
Sbjct: 298 TVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKP-NEVTFVGLIYACSHAGLVQKG 356

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           +QL      +  M   V   T  LD+ ++ G +S+A ++  +MP E +E TW ++++ 
Sbjct: 357 RQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSA 414


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 338/602 (56%), Gaps = 41/602 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN-----ILINFYSKCGLISGARK 89
           T  + L +C+       GK  HA      L  D +  N      L++ Y  CG +   R 
Sbjct: 218 TFASVLPACSHLDLLRTGKEIHA----YALRTDDVIENSFVGSALVDMYCNCGQVESGRL 273

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD +  R I  WN +I  Y  +  +++A+ LFI M        +  T+SS++ A     
Sbjct: 274 VFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCE 333

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
            +   + +H + +K  ++ N ++  AL+D+Y++ G I  + R+F+SM +R+ V+W++++ 
Sbjct: 334 GISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIIT 393

Query: 210 GFVQNELYEEALILFRRAQVL----------------GLEYNQFTISSVICACAGLAALI 253
            +V      +AL+L    Q +                  + N  T+ +V+  CA L+AL 
Sbjct: 394 SYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALA 453

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           +GK++HA   +    S +   S+LVDMYAKCGC+  A  VF  +  +NV+ WN +I  + 
Sbjct: 454 KGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYG 513

Query: 314 RHARSVEVMILFEKMQQAG-----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
            H +  E + LFE M   G     + P E T+I++ ++CSH GMV++G S F  M  +H 
Sbjct: 514 MHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHG 573

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMP--FDATASMWGSLLASCRNYRNLELAEI 426
           + P   HY+C++D++GRAG + EAY L+  MP  FD   + W SLL +CR Y N+E+ EI
Sbjct: 574 IEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGA-WSSLLGACRIYHNIEIGEI 632

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE------ 480
           AA+ L  ++PD A +++LLSNIY++   W++    R+ ++   VKKE   SW+E      
Sbjct: 633 AAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVH 692

Query: 481 --IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
             + G  +HP+  +++  LE L E +KK GY P+T   LHD+++  K+ +L  HSEKLA+
Sbjct: 693 KFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAI 752

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FG++   PG  IR+ KNLR+C DCH+  KF S+I  RE I+RD  RFHHF +G+CSC D
Sbjct: 753 AFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGD 812

Query: 599 FW 600
           +W
Sbjct: 813 YW 814



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 198/387 (51%), Gaps = 17/387 (4%)

Query: 38  ATLQSCARERAPVRGKVCHAKII--GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           A L++ A  +    GK  HA +   G G  +     N L+N Y KCG +  A KVFD + 
Sbjct: 15  AVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRIT 74

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRD-VF 152
           +R  VSWN+II +       + A+  F  ML EG  P S FT+ S+  AC+   KRD ++
Sbjct: 75  ERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEP-SSFTLVSMALACSNLRKRDGLW 133

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             KQ+H    +    R  F   AL+ +YAK G + DA  +     +R+ VTW+SM++ F 
Sbjct: 134 LGKQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFS 192

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNM 271
           QNE + EAL+  R   + G++ +  T +SV+ AC+ L  L  GK++HA   +T     N 
Sbjct: 193 QNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENS 252

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-Q 330
           F  S+LVDMY  CG V     VF  + ++ + LWN MI+G+++     + ++LF +M+  
Sbjct: 253 FVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAA 312

Query: 331 AGLHPNEQTYISVLSA---CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           AGL+ N  T  S++ A   C  I   E    Y    V +  +  N +  + +ID+  R G
Sbjct: 313 AGLYSNATTMSSIVPAYVRCEGISRKEGIHGY----VIKRGLETNRYLQNALIDMYSRMG 368

Query: 388 LIHEAYDLILNMPFDATASMWGSLLAS 414
            I  +  +  +M  D     W +++ S
Sbjct: 369 DIKTSKRIFDSME-DRDIVSWNTIITS 394



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 179/343 (52%), Gaps = 13/343 (3%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH--VFALKAAMDRNVFVGTALLDVYAK 182
           M+  G +P   F   +VL A A  ++++  KQ+H  VF        +V +   L+++Y K
Sbjct: 1   MIGSGFSP-DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGK 59

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG + DA +VF+ + ER++V+W+S+++   + E +E A+  FR   + G E + FT+ S+
Sbjct: 60  CGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSM 119

Query: 243 ICACAGL---AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
             AC+ L     L  GKQ+H    + G     F+ ++L+ MYAK G + DA  +    E+
Sbjct: 120 ALACSNLRKRDGLWLGKQIHGCCFRKGHWRT-FSNNALMAMYAKLGRLDDAKSLLVLFED 178

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           +++V WN+MIS FS++ R +E ++    M   G+ P+  T+ SVL ACSH+ ++  GK  
Sbjct: 179 RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEI 238

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
               ++  +V+ N F  S ++D+    G + E+  L+ +   D    +W +++A    Y 
Sbjct: 239 HAYALRTDDVIENSFVGSALVDMYCNCGQV-ESGRLVFDSVLDRKIGLWNAMIA---GYA 294

Query: 420 NLELAEIAAKQLFGMEPDNA--GNHLLLSNIYAANRRWEEVAR 460
             E  E A      ME       N   +S+I  A  R E ++R
Sbjct: 295 QSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISR 337



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 184/399 (46%), Gaps = 67/399 (16%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC 81
           A+A   +NAT +S++      C       R +  H  +I  GL  +    N LI+ YS+ 
Sbjct: 311 AAAGLYSNATTMSSIVPAYVRC---EGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRM 367

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR-------------E 128
           G I  ++++FD M  R IVSWNTII SY   GR  +A+ L   M R             E
Sbjct: 368 GDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDE 427

Query: 129 GKTPY--SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            + P+  +  T+ +VL  CA+   + + K++H +A++  +   V VG+AL+D+YAKCG +
Sbjct: 428 KQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCL 487

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-----LEYNQFTISS 241
           + A RVF+ MP RN +TW+ ++  +  +   +E+L LF      G     ++  + T  +
Sbjct: 488 NLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIA 547

Query: 242 VICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           +  +C+    + +G  + H +  + G        + +VD+  + G V +AY         
Sbjct: 548 LFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYG-------- 599

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
              L NTM SGF +                         + S+L AC     +E G+   
Sbjct: 600 ---LVNTMPSGFDKVG----------------------AWSSLLGACRIYHNIEIGE--- 631

Query: 361 DLMVKQHNVL---PNVF-HYSCMIDILGRAGLIHEAYDL 395
              +   N+L   P+V  HY  + +I   AGL  +A +L
Sbjct: 632 ---IAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNL 667


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 347/607 (57%), Gaps = 52/607 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CAR  +   GK  HA++I      D   ++ L+  Y+KCG    A+ VF+ 
Sbjct: 271 TTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNS 330

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  V+W  +I  +  +G   E+V LF N +R       +F +++++  C ++ D+  
Sbjct: 331 LHDRNNVAWTVLIAGFLQHGCFTESVELF-NQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKC------------------------------ 183
            +QLH   LK+   + V V  +L+ +YAKC                              
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQ 449

Query: 184 -GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR-RAQVLGLEYNQFTISS 241
            G I+ A   F+ M  +N +TW++M+  ++Q+   E+ L ++        +  +  T  +
Sbjct: 450 VGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVT 509

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           +   CA L A   G Q+     K G   +   A++++ MY+KCG +++A  VF  +  K+
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +V WN MI+G+S+H    + + +F+ + + G  P+  +Y++VLS CSH G+V++GKSYFD
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFD 629

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           +M + HN+ P + H+SCM+D+LGRAG + EA DLI  MP   TA +WG+LL++C+ + N 
Sbjct: 630 MMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNN 689

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ELAE+AAK +F ++  ++G+++L++ IYA   + ++ A+ RKL+RD  +KK    SW+E+
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 749

Query: 482 KGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
             K         +HP++  I  KL++L+E++ +LGY            DS + E  IHHS
Sbjct: 750 NNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVR---------TDSPRSE--IHHS 798

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGLM L   +PI IMKNLRICGDCH+ +K  S + GRE ++RD  RFHHF  GS
Sbjct: 799 EKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGS 858

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 859 CSCGDYW 865



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 167/305 (54%), Gaps = 5/305 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y K   +  A ++FD MP+R +VSWN ++ + + +GR +EA+ + ++M  +G  
Sbjct: 208 NSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-V 266

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
                T +S L ACA    +   KQLH   ++     + +V +AL+++YAKCG   +A  
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF S+ +RN V W+ ++AGF+Q+  + E++ LF + +   +  +QF ++++I  C     
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H++  K+G    +  ++SL+ MYAKC  +  A  +F  + EK++V W +MI+ 
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITA 446

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            S+     +    F+ M       N  T+ ++L A    G  E G   +++M+ + +V P
Sbjct: 447 HSQVGNIAKAREFFDGMST----KNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502

Query: 372 NVFHY 376
           +   Y
Sbjct: 503 DWVTY 507



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 159/312 (50%), Gaps = 31/312 (9%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + +T N+++N Y K G +S A ++F  MP R + SWNT++  Y  + +   ++  F++M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R G +  + FT +  + +C A  +     QL     K     +  V  AL+D++ +CG +
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 187 SDASRVF-------------------------------ESMPERNEVTWSSMVAGFVQNE 215
             ASR+F                               +SMPER+ V+W+ MV+   Q+ 
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
              EAL +    Q  G+  +  T +S + ACA L++L  GKQ+HA + +     + + AS
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVAS 309

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +LV++YAKCGC  +A  VF+ + ++N V W  +I+GF +H    E + LF +M+   +  
Sbjct: 310 ALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL 369

Query: 336 NEQTYISVLSAC 347
           ++    +++S C
Sbjct: 370 DQFALATLISGC 381



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 38/279 (13%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           NV     +L+ Y K G +SDA  +F  MP R+  +W+++++G+ Q++ Y  +L  F    
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 229 VLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
             G    N FT +  + +C  L       Q+  ++ K G   +   A++LVDM+ +CG V
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 288 -------------------------VDAYFV------FSGIEEKNVVLWNTMISGFSRHA 316
                                    V  Y V      F  + E++VV WN M+S  S+  
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R  E + +   MQ  G+  +  TY S L+AC+ +  +  GK     +++    LP +  Y
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN---LPCIDPY 306

Query: 377 --SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
             S ++++  + G   EA   + N   D     W  L+A
Sbjct: 307 VASALVELYAKCGCFKEAKG-VFNSLHDRNNVAWTVLIA 344



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHAR 317
           H  L   G  S +F  ++L+  Y  CG + DA   + + I   NV+  N M++G+ +  R
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 318 SVEVMILFEKM 328
             + + LF +M
Sbjct: 87  LSDAVELFGRM 97


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/554 (41%), Positives = 334/554 (60%), Gaps = 20/554 (3%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
             +D   S  LI+ Y+  G +  AR+VFDE P + I  WN ++ +       +EA+A   
Sbjct: 110 FRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLA 169

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFE-----CKQLHVFALKAAMDRNVFVGTALLD 178
           +M R  + P   ++ +  L AC A            +++H  A++     +  V T L+D
Sbjct: 170 DMGRL-RVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLID 228

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR--AQVLGLEYNQ 236
            YAK G++S A  VF +MPERN V+W++M+  + +NE   +A++LF+   A    L  N 
Sbjct: 229 CYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNS 288

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            TI  ++ A AG+ AL QGK +HA + + GF S +   ++L+ MY KCGC+     +F  
Sbjct: 289 VTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDL 348

Query: 297 I-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           I   K+VV WNT+ISG+  H    E + +FE M Q G+ PN  T+ISVL ACSH G+V++
Sbjct: 349 IGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDE 408

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           GK  F+ MV  +NV P   HY+CM+D+LGRAG + EA +LI  M    +  +WGSLL +C
Sbjct: 409 GKRLFESMV-DYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGAC 467

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R +R++E AE+A  QLF +EP NAGN++LL++IYA  +   EV   + L+ +  ++K   
Sbjct: 468 RIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPG 527

Query: 476 KSWVEIKGKRNH---------PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
            SW+E+K KR H         P+I E+ + + + V +MK  GY P+T   L+D+E+  K+
Sbjct: 528 CSWIEVK-KRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEKE 586

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
           ++L+ HSEKLA+ FGL+    G  IRI KNLR+C DCHS  KF S+ A RE IVRD+NRF
Sbjct: 587 KILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRF 646

Query: 587 HHFTNGSCSCWDFW 600
           HHF +G CSC D+W
Sbjct: 647 HHFRDGICSCGDYW 660



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 6/269 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA  +  G    T  +  LI+ Y+K G++S A  VF  MP+R +VSW  +IG Y  N R 
Sbjct: 208 HAHAVRRGYGLHTHVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERP 267

Query: 116 QEAVALFINML--REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
            +A+ LF  M+   E   P S  T+  +L A A    + + K LH + L+   D  V V 
Sbjct: 268 GDAILLFQEMVASDEDLVPNS-VTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVL 326

Query: 174 TALLDVYAKCGLISDASRVFESMPERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
            AL+ +Y KCG +     +F+ +  R + V+W+++++G+  +    EA+ +F     +G+
Sbjct: 327 NALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGV 386

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             N  T  SV+ AC+    + +GK++   +            + +VD+  + G + +A  
Sbjct: 387 SPNIITFISVLGACSHAGLVDEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLDEAVE 446

Query: 293 VFSGIE-EKNVVLWNTMISGFSRHARSVE 320
           +  G+    +  +W +++ G  R  R VE
Sbjct: 447 LIQGMHIRPSPQVWGSLL-GACRIHRHVE 474



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L + A   A  +GK+ HA I+  G ++     N L+  Y KCG +   R +FD +
Sbjct: 290 TIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLI 349

Query: 95  PQR-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
             R  +VSWNT+I  Y  +G   EAV +F +M + G +P +  T  SVL AC+    V E
Sbjct: 350 GHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSP-NIITFISVLGACSHAGLVDE 408

Query: 154 CKQLHVFALKAAMDRNVFVG----TALLDVYAKCGLISDASRVFESMPER-NEVTWSSMV 208
            K+L     ++ +D NV         ++D+  + G + +A  + + M  R +   W S++
Sbjct: 409 GKRL----FESMVDYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLL 464

Query: 209 A 209
            
Sbjct: 465 G 465


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 330/573 (57%), Gaps = 40/573 (6%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D    + LI  Y+ CG I  AR +FD+M  R +V+WN +I  Y+ N      + L+  M 
Sbjct: 150 DPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMK 209

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF------------------------AL 162
             G  P     + +VL ACA   ++   K +H F                        A+
Sbjct: 210 TSGTEP-DAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAM 268

Query: 163 KAAMD-------RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
             A +       +++ V TA+L  YAK G++ DA  +F+ M E++ V WS+M++G+ ++ 
Sbjct: 269 HLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESY 328

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
              EAL LF   Q   +  +Q T+ SVI ACA + AL+Q K +H    K GFG  +   +
Sbjct: 329 QPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINN 388

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
           +L+DMYAKCG +V A  VF  +  KNV+ W++MI+ F+ H  +   + LF +M++  + P
Sbjct: 389 ALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEP 448

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N  T+I VL ACSH G+VE+G+ +F  M+ +H + P   HY CM+D+  RA  + +A +L
Sbjct: 449 NGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMEL 508

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
           I  MPF     +WGSL+++C+N+  +EL E AA +L  +EPD+ G  ++LSNIYA  +RW
Sbjct: 509 IETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRW 568

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKL 507
           ++V   RKL++   V KEK+ S +E+  +        R H +  EIY KL+ +V ++K +
Sbjct: 569 DDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLV 628

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY P T   L D+E+  K+E+++ HSEKLAL +GL+       IRI+KNLRIC DCHSFM
Sbjct: 629 GYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFM 688

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           K  S++   E ++RD  RFHHF  G CSC D+W
Sbjct: 689 KLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 171/358 (47%), Gaps = 35/358 (9%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  +F  +P       N ++  ++     +  ++L++++ R G  P   F+   +L A +
Sbjct: 68  ALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNG-FPLDRFSFPPLLKAVS 126

Query: 147 AKRDVFECKQLHVFALKAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
               +    ++H  A K      + F+ +AL+ +YA CG I DA  +F+ M  R+ VTW+
Sbjct: 127 KLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWN 186

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
            M+ G+ QN  Y+  L L+   +  G E +   + +V+ ACA    L  GK +H  +   
Sbjct: 187 IMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDN 246

Query: 266 GFGSNMFAASSLVDMYAKCGC-------------------------------VVDAYFVF 294
           GF       +SLV+MYA CG                                V DA F+F
Sbjct: 247 GFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIF 306

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             + EK++V W+ MISG++   + +E + LF +MQ+  + P++ T +SV+SAC+++G + 
Sbjct: 307 DRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALV 366

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           + K +      ++     +   + +ID+  + G + +A ++  NMP     S W S++
Sbjct: 367 QAK-WIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVIS-WSSMI 422



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 140/323 (43%), Gaps = 52/323 (16%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L   L +CA       GK  H  I   G    +     L+N Y+ CG +  AR+V+D++P
Sbjct: 220 LCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLP 279

Query: 96  -------------------------------QRCIVSWNTIIGSYTTNGREQEAVALFIN 124
                                          ++ +V W+ +I  Y  + +  EA+ LF  
Sbjct: 280 SKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNE 339

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M R    P  + T+ SV+ ACA    + + K +H +A K    R + +  AL+D+YAKCG
Sbjct: 340 MQRRRIVP-DQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCG 398

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            +  A  VFE+MP +N ++WSSM+  F  +   + A+ LF R +   +E N  T   V+ 
Sbjct: 399 NLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLY 458

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-----------FV 293
           AC+    + +G++         F S+M     +       GC+VD Y            +
Sbjct: 459 ACSHAGLVEEGQK---------FFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELI 509

Query: 294 FSGIEEKNVVLWNTMISGFSRHA 316
            +     NV++W +++S    H 
Sbjct: 510 ETMPFPPNVIIWGSLMSACQNHG 532



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 129/266 (48%), Gaps = 10/266 (3%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRN-----VFVGTALLDVYAKCGLISDASRVFES 195
           +L +C   R V   KQ+H   L++ MD +       V             +  A  +F  
Sbjct: 18  LLASCKTLRHV---KQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSH 74

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           +P       + ++  F +    E  L L+   +  G   ++F+   ++ A + L+AL  G
Sbjct: 75  IPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLG 134

Query: 256 KQVHAVLCKTGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
            ++H +  K GF  ++ F  S+L+ MYA CG ++DA F+F  +  ++VV WN MI G+S+
Sbjct: 135 LEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQ 194

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           +A    V+ L+E+M+ +G  P+     +VLSAC+H G +  GK+     +K +       
Sbjct: 195 NAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF-IKDNGFRVGSH 253

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMP 400
             + ++++    G +H A ++   +P
Sbjct: 254 IQTSLVNMYANCGAMHLAREVYDQLP 279



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 7/180 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + + +CA   A V+ K  H      G       +N LI+ Y+KCG +  AR+VF+ M
Sbjct: 351 TMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENM 410

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ ++SW+++I ++  +G    A+ALF  M  +   P +  T   VL AC+    V E 
Sbjct: 411 PRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEP-NGVTFIGVLYACSHAGLVEEG 469

Query: 155 KQLHVFAL---KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           ++     +   + +  R  +    ++D+Y +   +  A  + E+MP   N + W S+++ 
Sbjct: 470 QKFFSSMINEHRISPQREHY--GCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSA 527


>gi|222618959|gb|EEE55091.1| hypothetical protein OsJ_02835 [Oryza sativa Japonica Group]
          Length = 575

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 336/580 (57%), Gaps = 35/580 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI-----LINFYSKCGLISGARK 89
           +L   L + +  RA  +G+  H  ++  G    T +S+      L+ FY++C L   +  
Sbjct: 17  SLADLLVALSAARALPKGQQLHGHLLKAGHLPATASSHAPIAHHLLTFYARCALPGDSLC 76

Query: 90  VFDEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            F ++P      +W+++I S++ NG    A   F  ML  G  P ++  + S     AAK
Sbjct: 77  AFLDLPAPPSPAAWSSLISSFSQNGLPAAAFDAFRRMLAAG-VPATDRNIPS-----AAK 130

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
              F                +VFVG+++LD+YAKCG ++DA R+F+ MP+RN V+WS+++
Sbjct: 131 GTPFA--------------GDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALI 176

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
            G+    ++  A+ +FR A    +  N FT+S ++  CA       G QVHA   KT   
Sbjct: 177 CGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTALN 236

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           ++ F  SSLV +Y+KCG V  AY VF    E+N+ +WN  ++  ++H  +      F  M
Sbjct: 237 ASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDM 296

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           Q AG  PN  T++S+++ACSH G+V++GK YF LM K++ + P   HY+ M+D+LGR G 
Sbjct: 297 QNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLM-KEYRIEPQAEHYAAMVDLLGRVGR 355

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           I EA  LI +MP +    +WG+LL +CR +++ + A IAAK+LF     ++G H+LLS+ 
Sbjct: 356 ISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSST 415

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKL 500
           YAA  R  + A ARK +RD+ V+KE   SW+E  G+        R HPR  EIY+ LEK+
Sbjct: 416 YAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKV 475

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
            E+M+  GY  +T   + DV+   KQ  + +HSE+LA+  GL+ +  GVPIR+MKNLR+C
Sbjct: 476 GEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVC 535

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH+ +K+ S+  GR  I+RD  RFH F +G CSC DFW
Sbjct: 536 DDCHNAVKYLSKCTGRIVILRDNRRFHRFEDGVCSCGDFW 575


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/482 (41%), Positives = 305/482 (63%), Gaps = 15/482 (3%)

Query: 131 TP-YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
           TP YS +  +S+L +C A++ +   KQLH     A    +  + T L+++Y  C  +S A
Sbjct: 72  TPTYSNY--ASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSA 129

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
             +F+ +P+ N   W+ ++ G+  N  YE A+ L+ +    GL  + FT   V+ ACA L
Sbjct: 130 RLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL---WN 306
           +A+  G+++H  + +TG+  ++F  ++L+DMYAKCGCV  A  VF  I  ++ VL   WN
Sbjct: 190 SAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWN 249

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MI+G++ H  + E + LFE+M +    P+  T++ VLSACSH G++E+G  +F+ M++ 
Sbjct: 250 AMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRD 308

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P V HY+CM+D+LG +G + EAY+LI+ M     + +WG+LL SC+ + N+EL EI
Sbjct: 309 YKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEI 368

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           A ++L  +EPD+AGN+++LSNIYA   +WE VA+ RKL+ D  +KK  + SW+E+K    
Sbjct: 369 ALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVH 428

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G  +HP   EIYS+LE++   MK+ GY P T    HDVED  K  ++  HSE+LA+
Sbjct: 429 AFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAI 488

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGL+   PG  + I KNLRIC DCH  +KF S+I  RE  VRD+NR+HHF +G CSC D
Sbjct: 489 AFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGD 548

Query: 599 FW 600
           +W
Sbjct: 549 YW 550



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 160/339 (47%), Gaps = 9/339 (2%)

Query: 12  YYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS 71
           + K+  S +   A +       S   + LQSC   +A   GK  HA++   G   DT+ +
Sbjct: 54  HLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIA 113

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
             L+N Y  C  +S AR +FD +P+  I  WN +I  Y  NG  + AV L+  M   G  
Sbjct: 114 TKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV 173

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P   FT   VL ACAA   +   +++H   ++   +++VFVG AL+D+YAKCG +  A  
Sbjct: 174 P-DNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSARE 232

Query: 192 VFESMPERNE---VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           VF+ +  R+    V+W++M+ G+  +    EAL LF     +  + +  T   V+ AC+ 
Sbjct: 233 VFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSH 291

Query: 249 LAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-KNVVLWN 306
              L +G      + +       +   + +VD+    G + +AY +   ++   +  +W 
Sbjct: 292 GGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWG 351

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            +++    HA      I  E++ +  L P++     +LS
Sbjct: 352 ALLNSCKIHANVELGEIALERLIE--LEPDDAGNYVILS 388


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/485 (41%), Positives = 318/485 (65%), Gaps = 14/485 (2%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M REG  P ++FT S++L A           ++H  A+K    ++  VGTALLD Y K G
Sbjct: 1   MSREGIKP-NDFTYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRG 55

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            + +AS+VF+ + E++ V WS+M+ G+ Q    E A+ +F +     ++ N++T S +I 
Sbjct: 56  NVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIIN 115

Query: 245 ACAGLAALI-QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
           ACA   A + QGKQ+HA   K+ F + +  +S+L+ MY+K G +  A+ VF    E+++V
Sbjct: 116 ACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLV 175

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN++ISG+++H    + + +FE+MQ+  L  +  T+I V+SAC+H G+  +G+ YFD+M
Sbjct: 176 SWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIM 235

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
           VK H++ P + HYSCM+D+ GRAG++ +A ++I  MPF A+A++W +LLA+   +RNLE+
Sbjct: 236 VKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEV 295

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK- 482
            ++AA +L  ++P N  +++LL+N+YA+   W+E A+ RKL+ + +VKK    SW+E+K 
Sbjct: 296 GKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKN 355

Query: 483 -------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                  G  +HP   +IY+KLE+L  ++K  GY+P+T +   DV++  K+ +L  HSE+
Sbjct: 356 KTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSER 415

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGL+   PG P++I+KNLR+CGDCHS +K  S + GR+ +VRD NRFHHF  G CS
Sbjct: 416 LAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCS 475

Query: 596 CWDFW 600
           C D+W
Sbjct: 476 CGDYW 480



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 140/269 (52%), Gaps = 5/269 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+ I             L++ Y K G +  A KVF  + ++ IV+W+ +I  Y   G  
Sbjct: 29  HAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDT 88

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVGT 174
           + AV +F+ M +E   P +E+T S ++ ACAA    V + KQLH +++K+  +  + V +
Sbjct: 89  EGAVRIFVQMAKEKIKP-NEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSS 147

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           ALL +Y+K G I  A  VF+   ER+ V+W+S+++G+ Q+    +AL +F   Q   LE 
Sbjct: 148 ALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEM 207

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFV 293
           +  T   VI AC       +G++   ++ K       M   S +VD+Y + G +V A  +
Sbjct: 208 DGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEI 267

Query: 294 FSGIE-EKNVVLWNTMISGFSRHARSVEV 321
            + +    +  +W T+++    H R++EV
Sbjct: 268 INEMPFPASANVWRTLLAASCIH-RNLEV 295



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 35  TLQATLQSCARERAPV-RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T    + +CA   A V +GK  HA  I    NN    S+ L+  YSK G I  A +VF  
Sbjct: 109 TFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKR 168

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
             +R +VSWN+II  Y  +G  ++A+ +F  M R+        T   V+ AC       E
Sbjct: 169 QRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQ-NLEMDGVTFIGVISACTHTGLANE 227

Query: 154 CKQLHVFALKA-AMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            ++     +K   ++  +   + ++D+Y + G++  A  +   MP   +   W +++A
Sbjct: 228 GQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLA 285


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/590 (35%), Positives = 344/590 (58%), Gaps = 14/590 (2%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           + S S      +  T  + L +C       +G+   A+ +  G  +D++  N LIN YSK
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSK 210

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG +  ARKVFD +  R +++WNT+I  Y   G   +A+ LF  M      P +  T   
Sbjct: 211 CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP-NVVTFIG 269

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL-ISDASRVFESMPER 199
           +L AC    D+ + + +H    +   + ++ +G  LL++Y KC   + +A +VFE M  R
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + +TW+ ++  +VQ    ++AL +F++ Q+  +  N+ T+S+V+ ACA L A  QGK VH
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVH 389

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A++      +++   +SL++MY +CG + D   VF+ I +K++V W+T+I+ +++H  S 
Sbjct: 390 ALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSR 449

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
             +  F ++ Q GL  ++ T +S LSACSH GM+++G   F  MV  H + P+  H+ CM
Sbjct: 450 TGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCM 509

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+L RAG +  A +LI +MPF   A  W SLL+ C+ + + + A   A +LF +E ++ 
Sbjct: 510 VDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDE 569

Query: 440 GNHL-LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRI 490
            + + LLSN+YA   RW++V   RK       +K    S++EI         G ++HP  
Sbjct: 570 HSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEE 626

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
             I +++++L ++MK  GY P+    LH+V++  K+++L +HSEKLA+ +GL+   PG P
Sbjct: 627 ELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTP 686

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + I+KNLR C DCH+  KF SRI GR+ +VRD  RFHHF NGSCSC D+W
Sbjct: 687 LHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 199/377 (52%), Gaps = 8/377 (2%)

Query: 43  CARERAPVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
           C+  +   +G++ HA I+   L   D +    LI  Y++C  +  ARK FDEM ++ +V+
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 102 WNTIIGSYTTNGREQEAVALFINMLR---EGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           WN +I  Y+ NG  + A+ ++ +M+    EG  P    T SS L AC    D+ + +++ 
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKP-DAITFSSALYACTVVGDISQGREIE 186

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              + +    +  V  AL+++Y+KCG +  A +VF+ +  R+ + W++M++G+ +     
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           +AL LF+R      + N  T   ++ AC  L  L QG+ +H  + + G+ S++   + L+
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLL 306

Query: 279 DMYAKCGCVV-DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +MY KC   + +A  VF  +  ++V+ WN +I  + ++ ++ + + +F++MQ   + PNE
Sbjct: 307 NMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE 366

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T  +VLSAC+ +G   +GK+   L+         V   S M ++  R G + +   +  
Sbjct: 367 ITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLM-NMYNRCGSLDDTVGVFA 425

Query: 398 NMPFDATASMWGSLLAS 414
            +  D +   W +L+A+
Sbjct: 426 AIR-DKSLVSWSTLIAA 441



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 166/286 (58%), Gaps = 5/286 (1%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y KCG ++ A  VF  +     VSW  I+ ++  NG  +EA+  +  M+ EG  P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFES 195
            V ++   C++ +D+ + + LH   L+   ++ ++ +GTAL+ +YA+C  +  A + F+ 
Sbjct: 61  FVVAI-GVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFR---RAQVLGLEYNQFTISSVICACAGLAAL 252
           M ++  VTW++++AG+ +N  +  AL +++        G++ +  T SS + AC  +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            QG+++ A    +G+ S+    ++L++MY+KCG +  A  VF  ++ ++V+ WNTMISG+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           ++   + + + LF++M      PN  T+I +L+AC+++  +E+G++
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRA 285


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 325/558 (58%), Gaps = 11/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA  I   L+ D    N L++ Y KCG I  + KVF+ M  R  +SW TI+  +  
Sbjct: 386 GREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQ 445

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           + R  EA+ + + + +EG    S   + S+L  C   + +   KQ+H +A++  +  ++ 
Sbjct: 446 SSRHSEALEMILELQKEGIMVDS-MMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLI 503

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +   L+D+Y +CG    +  +F+ + +++ V+W+SM+     N     A+ LF   Q   
Sbjct: 504 LENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKAN 563

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ +   + S++ A AGL++L +GKQVH  L +  F       SSLVDMY+ CG +  A 
Sbjct: 564 IQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAI 623

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF   + K+VVLW  MI+    H    + + LF++M Q GL P+  +++++L ACSH  
Sbjct: 624 RVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSK 683

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+GK Y D+MV ++ + P   HY+C++DILGR+G   EAY+ I  MP D  +++W +L
Sbjct: 684 LVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCAL 743

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L +CR +RN  LA +AA +L  +EPDN GN++L+SN++A   +W      R  + +  ++
Sbjct: 744 LGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLR 803

Query: 472 KEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKL-GYKPETEHDLHDVED 522
           K  + SW+EI         G   H     I+ KL ++ E +++  GY  +T   LHD  +
Sbjct: 804 KNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSE 863

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K ++L  HSE++A+ FGL+   PG+PIRI KNLR+CGDCH F K  S++  R+ +VRD
Sbjct: 864 EEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRD 923

Query: 583 LNRFHHFTNGSCSCWDFW 600
            NRFHHF+ GSCSC DFW
Sbjct: 924 ANRFHHFSGGSCSCEDFW 941



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 181/323 (56%), Gaps = 10/323 (3%)

Query: 52  GKVCHAKIIGMG-LN--NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           G+  HA  +  G LN  +D   +  L+  Y +CG +  AR++F+ MP R + SWN ++G+
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 109 YTTNGREQEAVALFINMLREGKTPYSE---FTVSSVLCACAAKRDVFECKQLHVFALKAA 165
           Y ++G   EA+ ++   +R    P S     T++SVL AC A+ D     ++H  A+K  
Sbjct: 136 YLSSGSAGEAMRVY-GAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALIL 223
           +D++  V  AL+ +YAKCGL+  A RVFE + +  R+  +W+S+V+G VQN    EAL L
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
           FR  Q  G   N +T  +V+  CA L  L  G+++HA L K G   N+   ++L+ MYAK
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI-QCNALLVMYAK 313

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
            G V  A  VF  I EK+ + WN+M+S + +++   E +  F +M Q G  P+    +S+
Sbjct: 314 YGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSL 373

Query: 344 LSACSHIGMVEKGKSYFDLMVKQ 366
            SA  H+  +  G+ +    +KQ
Sbjct: 374 SSALGHLSRLNNGREFHAYAIKQ 396



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 212/424 (50%), Gaps = 9/424 (2%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
            A+ +++A  +A +  TL + L++C  E     G   H   + +GL+  TL +N LI  Y
Sbjct: 150 GAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMY 209

Query: 79  SKCGLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
           +KCGL+  A +VF+ + Q  R + SWN+++     NGR  EA+ALF  M   G  P + +
Sbjct: 210 AKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAG-FPMNSY 268

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T  +VL  CA    +   ++LH   LK   + N+    ALL +YAK G +  A RVF  +
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAKYGRVDSALRVFGQI 327

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
            E++ ++W+SM++ +VQN  Y EA+  F      G + +   + S+  A   L+ L  G+
Sbjct: 328 AEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGR 387

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           + HA   K    +++   ++L+DMY KCG +  +  VF  +  ++ + W T+++ F++ +
Sbjct: 388 EFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSS 447

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           R  E + +  ++Q+ G+  +     S+L  C  +  +   K      ++  N L ++   
Sbjct: 448 RHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIR--NGLLDLILE 505

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE--IAAKQLFGM 434
           + +IDI G  G    + +L   +      S W S++  C N   L  A       Q   +
Sbjct: 506 NRLIDIYGECGEFDHSLNLFQRVEKKDIVS-WTSMINCCTNNGRLNGAVFLFTEMQKANI 564

Query: 435 EPDN 438
           +PD+
Sbjct: 565 QPDS 568



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 9/177 (5%)

Query: 254 QGKQVHAVLCKTGF---GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           +G+QVHA    TG      + F A+ LV MY +CG V DA  +F+G+  + V  WN ++ 
Sbjct: 75  EGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 311 GFSRHARSVEVMILFEKMQQA---GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
            +     + E M ++  M+ +   G  P+  T  SVL AC   G    G     L VK  
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKV- 193

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLASC-RNYRNLE 422
            +  +    + +I +  + GL+  A  +   +  DA   + W S+++ C +N R LE
Sbjct: 194 GLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLE 250



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
            +GK  H  +I      +    + L++ YS CG ++ A +VF+    + +V W  +I + 
Sbjct: 585 TKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINAT 644

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ-LHVFALKAAMDR 168
             +G  ++A+ LF  ML+ G TP    +  ++L AC+  + V E K  L +   K  +  
Sbjct: 645 GMHGHGKQAIDLFKRMLQTGLTP-DHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKP 703

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
                  ++D+  + G   +A    ++MP +     W +++ 
Sbjct: 704 WQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLG 745


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/579 (36%), Positives = 340/579 (58%), Gaps = 14/579 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T+ + + +C        G+  H  +I  G   +   +N LI  +S  G    A  VF
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            +M  + +VSW  +I  Y  NG  ++AV  +  M  EG  P  E T++SVL ACA    +
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP-DEITIASVLSACAGLGLL 413

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            +   LH FA +  +   V V  +L+D+Y+KC  I  A  VF  +P +N ++W+S++ G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             N    EAL  F++  +L L+ N  T+ SV+ ACA + AL  GK++HA   +TG G + 
Sbjct: 474 RLNYRSFEALFFFQQ-MILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F  ++L+DMY +CG +  A+  F+  E K+V  WN +++G+++  +    + LF KM ++
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            ++P+E T+ S+L ACS  GMV  G  YF+ M  + ++ PN+ HY+ ++D+LGRAG + +
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLED 651

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY+ I  MP D   ++WG+LL +CR Y+N+EL E+AA+ +F M+  + G ++LL N+YA 
Sbjct: 652 AYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYAD 711

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEE 503
           + +W+EVAR RK++R++ +  +   SWVE+ G+ +        HP+I EI + LE   E+
Sbjct: 712 SGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEK 771

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M+  G     +    D+ D+ K E+   HSE+LA+ FGL+   PG PI + KNL +C +C
Sbjct: 772 MEATGLSMSKDSRRDDI-DASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENC 830

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD--FW 600
           H+ +KF S++  R   VRD  +FHHF +G CSC D  +W
Sbjct: 831 HNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 213/410 (51%), Gaps = 4/410 (0%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           + E  T  A L+ C  +RA   G   H+ +            N L++ + + G +  A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF +M +R + SWN ++G Y   G   EA+ L+  ML  G  P   +T   VL  C    
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP-DVYTFPCVLRTCGGLP 209

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   +++H+  ++   + +V V  AL+ +Y KCG I  A  VF+ MP R+ ++W++M++
Sbjct: 210 DLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMIS 269

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+ +N++  E L LF   +   ++ +  T++SVI AC  L     G++VH  + KTGF +
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            +   +SL+ M++  GC  +A  VFS +E K++V W  MISG+ ++    + +  +  M+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ P+E T  SVLSAC+ +G+++KG    +    +  +   V   + +ID+  +   I
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEF-ADRTGLTSYVIVANSLIDMYSKCRCI 448

Query: 390 HEAYDLILNMPFDATASMWGSLLASCR-NYRNLELAEIAAKQLFGMEPDN 438
            +A ++   +P     S W S++   R NYR+ E      + +  ++P++
Sbjct: 449 DKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFFQQMILSLKPNS 497



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 165/333 (49%), Gaps = 6/333 (1%)

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFAL 162
           N++I      G  ++A+ + ++ ++E +    E T  ++L  C  KR   E  ++H +  
Sbjct: 63  NSLILELCLKGDLEKAL-IHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVS 121

Query: 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
           K      V +G ALL ++ + G + +A  VF  M ER+  +W+ +V G+ +   ++EAL 
Sbjct: 122 KTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
           L+ R   +G+  + +T   V+  C GL  L +G++VH  + + GF S++   ++L+ MY 
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYV 241

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           KCG +  A  VF  +  ++ + WN MISG+  +   +E + LF  M++  + P+  T  S
Sbjct: 242 KCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTS 301

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           V+SAC  +G    G+     ++K    +  V   + +I +    G   EA  +   M F 
Sbjct: 302 VISACEALGDERLGREVHGYVIKT-GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
              S W ++++    Y    L E A +    ME
Sbjct: 361 DLVS-WTAMISG---YEKNGLPEKAVETYTIME 389


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 323/553 (58%), Gaps = 21/553 (3%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K+  M    D +    +I  Y + G +  AR++FDEM  R + +W T++  Y  NGR   
Sbjct: 166 KLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDV 225

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG-TAL 176
           A  LF  M    +  ++   +                +    F L  AM     V    +
Sbjct: 226 ARKLFEVMPERNEVSWTAMLMGYTQSG----------RMKEAFELFEAMPVKWIVACNEM 275

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +  +   G +  A  +FE M ER+E TW++M+  F +  L  EAL LF R Q  G+  N 
Sbjct: 276 ILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNF 335

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            ++ SV+  CA LA+L  G+QVHA L ++ F  +++ AS L+ MY KCG +V A  +F+ 
Sbjct: 336 PSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNR 395

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
              K+VV+WN+MI+G+S+H    E + +F  M  +G+ P+E T+I VLSACS+ G V++G
Sbjct: 396 FLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEG 455

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
              F+ M   + V P + HY+CM+D+LGRAG + EA +L+  MP +  A +WG+LL +CR
Sbjct: 456 FEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACR 515

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
           N+  L+LAE+A ++L  +EP NAG ++LLS++YA   RW +V   RK I +  V K    
Sbjct: 516 NHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKI-NRRVIKFPGC 574

Query: 477 SWVEIKGK---------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
           SW+E++ K         ++HP    I   LEKL   +++ GY P+    LHDV++  K  
Sbjct: 575 SWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTH 634

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
            L +HSE+LA+ +GL+ +  G+PIR+MKNLR+CGDCHS +K  +++ GRE I+RD NRFH
Sbjct: 635 SLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFH 694

Query: 588 HFTNGSCSCWDFW 600
           HF +GSCSC DFW
Sbjct: 695 HFKDGSCSCKDFW 707



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 163/372 (43%), Gaps = 63/372 (16%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
             +T++ N +I+ Y K G+++ ARKVFD MP+R +VSW +++  Y   G  +EA  LF  
Sbjct: 80  QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWE 139

Query: 125 MLRE----------GKTPYSEFTVSSVLCACAAKRDVFECKQL-----HVFALKAAMD-- 167
           M R           G    S    +  L     ++DV     +      V  L  A +  
Sbjct: 140 MPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELF 199

Query: 168 -----RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
                RNVF  T ++  YAK G +  A ++FE MPERNEV+W++M+ G+ Q+   +EA  
Sbjct: 200 DEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFE 259

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
           LF    V             I AC                            + ++  + 
Sbjct: 260 LFEAMPV-----------KWIVAC----------------------------NEMILQFG 280

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
             G +  A  +F G++E++   WN MI  F R    +E + LF +MQ+ G+  N  + IS
Sbjct: 281 LAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMIS 340

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           VLS C+ +  ++ G+     +V+      +++  S +I +  + G +  A   I N    
Sbjct: 341 VLSVCASLASLDHGRQVHARLVRSE-FDQDLYVASVLITMYVKCGDLVRAKG-IFNRFLF 398

Query: 403 ATASMWGSLLAS 414
               MW S++  
Sbjct: 399 KDVVMWNSMITG 410



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 45/357 (12%)

Query: 68  TLTSNI-LINFYSKCGLISGARKVFDE--MPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           +L SN   I+ Y + G I  ARKVFD   +PQR I SWN ++ +Y  + + ++A+ LF  
Sbjct: 18  SLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQ 77

Query: 125 MLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M +     ++      V     A  R VF+             +RNV   T+++  Y + 
Sbjct: 78  MPQRNTVSFNGMISGYVKNGMVADARKVFDVMP----------ERNVVSWTSMVRGYVQE 127

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G++ +A ++F  MP RN V+W+ M+ G ++    ++A  LF        E +   ++++I
Sbjct: 128 GMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIP----EKDVVVVTNMI 183

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
                +  L + +++   +       N+F  +++V  YAK G V  A  +F  + E+N V
Sbjct: 184 GGYCQVGRLDEARELFDEMKV----RNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEV 239

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI-------GMVEKG 356
            W  M+ G+++  R  E   LFE M            +  + AC+ +       G + + 
Sbjct: 240 SWTAMLMGYTQSGRMKEAFELFEAMP-----------VKWIVACNEMILQFGLAGEMHRA 288

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +  F+ M ++         ++ MI +  R GL  EA  L   M  +  A  + S+++
Sbjct: 289 RMMFEGMKERDEGT-----WNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMIS 340



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A    ++ + L  CA   +   G+  HA+++    + D   +++LI  Y KCG +  A+ 
Sbjct: 332 ALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKG 391

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F+    + +V WN++I  Y+ +G  +EA+ +F +M   G  P  E T   VL AC+   
Sbjct: 392 IFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQP-DEVTFIGVLSACSYSG 450

Query: 150 DVFECKQLHVF-ALKAA--MDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWS 205
            V E     +F A+K    ++  +     ++D+  + G + +A  + E MP E + + W 
Sbjct: 451 KVKE--GFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWG 508

Query: 206 SMVA 209
           +++ 
Sbjct: 509 ALLG 512


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 334/549 (60%), Gaps = 16/549 (2%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           ++N+ L +N  +  Y+KCG +S A +VF  +  + + SWN +IG Y+ +   + ++  + 
Sbjct: 424 VHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYF 483

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M   G  P   FTV S+L AC+  + +   K++H   ++  ++R+ FV  +LL +Y  C
Sbjct: 484 QMKSSGLLP-DLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHC 542

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +S A  +F++M ++  V+W++MV G++QN   E AL LFR+  + G++  + ++ SV 
Sbjct: 543 GELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVF 602

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC+ L +L  G++ H    K     N F A S++DMYAK G V++++ VF+G++E++V 
Sbjct: 603 GACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVA 662

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN M+ G+  H R+ E + LFE+MQ+ G  P+E T++ VL+AC+H G+V +G +Y D M
Sbjct: 663 SWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQM 722

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL-NMPFDATASMWGSLLASCRNYRNLE 422
                + P + HY+C+ID+L RAG + EA  +    M  +    +W  LL+SCR ++NLE
Sbjct: 723 KTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLE 782

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           + E  A +LF  EP+   N++LLSN+YA + +W+EV + R+ +++  ++K+   SW+E+ 
Sbjct: 783 MGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELN 842

Query: 483 GK-----------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           GK                I  ++S LE+   E+ K+GY+P+T    HD+ +  K E L  
Sbjct: 843 GKVFSFVAGESSLDGFEEIKSLWSVLER---EIGKMGYRPDTSSVQHDLSEEEKTEQLRG 899

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+T+GL+    G  +R+ KNLRIC DCH+  K  S++  RE +VRD  RFHHF N
Sbjct: 900 HSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 959

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 960 GFCSCGDYW 968



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 180/382 (47%), Gaps = 9/382 (2%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           L+ND +    +I  YS CG    +R VFD + ++ +  WN +I SY+ N      + +F+
Sbjct: 113 LSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFV 172

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M+ E       FT   V+ ACA   +V     +H   +K  +  +VFV  AL+  Y   
Sbjct: 173 KMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTN 232

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF----RRAQVLGLEYNQFTI 239
           G +SDA RVF+ MPERN V+W+SM+  F  N L EE  +L      +   +    +  T+
Sbjct: 233 GSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATL 292

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           ++V+  CA    +  GK VH +  K      +   ++L+DMY+KCGC+ DA  +F     
Sbjct: 293 ATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNN 352

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG--LHPNEQTYISVLSACSHIGMVEKGK 357
           KNVV WNTM+ GFS      +   L  +M   G  L  +E T ++ +  C    ++   K
Sbjct: 353 KNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLK 412

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
                 +KQ  V  N    +  +    + G +  A+ +  ++    T + W +L+     
Sbjct: 413 ELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIR-SKTVNSWNALIGGYSQ 471

Query: 418 YRNLELAEIAAKQL--FGMEPD 437
             +  L+  A  Q+   G+ PD
Sbjct: 472 SSDPRLSLDAYFQMKSSGLLPD 493



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 151/288 (52%), Gaps = 6/288 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T+ + L +C++ ++   GK  H  II   L  D+     L++ Y  CG +S A  +F
Sbjct: 493 DLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLF 552

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D M  + +VSWNT++  Y  NG  + A++LF  M+  G  P  E ++ SV  AC+    +
Sbjct: 553 DAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQP-CEISMMSVFGACSLLPSL 611

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              ++ H +ALK  ++ N F+  +++D+YAK G + ++ +VF  + ER+  +W++MV G+
Sbjct: 612 RLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGY 671

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN- 270
             +   +EA+ LF   Q  G   ++ T   V+ AC   + L+     +    KT FG N 
Sbjct: 672 GIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTAC-NHSGLVHEGLTYLDQMKTLFGMNP 730

Query: 271 -MFAASSLVDMYAKCGCVVDAYFVFSG--IEEKNVVLWNTMISGFSRH 315
            +   + ++DM  + G + +A  + +    EE  V +WN ++S    H
Sbjct: 731 TLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIH 778


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 325/542 (59%), Gaps = 10/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D    N +++ +   G +  A ++F++MP R ++SW ++IG    NGR  EA+ +F  ML
Sbjct: 173 DVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKML 232

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
              K   S  T++  L ACA     F   Q+H   +K     N ++  +L+  YA C LI
Sbjct: 233 ASFKATSS--TLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLI 290

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +AS +F     RN V W++++ G+  N  + +AL +F+    + +  NQ +++S + +C
Sbjct: 291 DNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSC 350

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
            GL A+ +G++VHAV  K G  S++F ++SLV MY KCG + D   VF+ +  KNVV WN
Sbjct: 351 CGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWN 410

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I G ++H      + LF +M +  + P+E T   +LSAC H GM+ KG+ +F    K 
Sbjct: 411 SIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKN 470

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             +     HYS M+D+LGR G + EA  LI  MP  A   +W +LL+S  N+ N+ +AE 
Sbjct: 471 FGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAER 530

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
           AAK +  ++P+ +  + LLSN+YA+  +W EV++ RK ++D  + K+   SW+ IK    
Sbjct: 531 AAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKH 590

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G ++HP   +IY KLE L  ++K+LGY P+ +   HDVE  +K+E+L +HSE+LA+
Sbjct: 591 NFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAI 650

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGL+    G  I +MKNLRICGDCH+ +K  S++ GRE +VRD +RFHHF NG+CSC D
Sbjct: 651 GFGLISTVEGSTIIVMKNLRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGD 710

Query: 599 FW 600
           +W
Sbjct: 711 YW 712



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 181/373 (48%), Gaps = 25/373 (6%)

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM-- 125
           T  SN L++F+ + G I  AR +F++M    +  +  +IG Y   GR ++A+ LF  M  
Sbjct: 50  TPPSNYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPV 109

Query: 126 --------LREGKTPYSEFTVSSVLCACAAKRDV----------FECKQLHVFA--LKAA 165
                   + +G     + T++  +    ++R+V           E  ++ V     +  
Sbjct: 110 KDLISWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVM 169

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
             ++V    +++  +   G + DA  +FE MP RN ++W+S++ G   N    EAL++F 
Sbjct: 170 PTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFH 229

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
           +  +   +    T++  + ACA +     G Q+H ++ KTG+  N + ++SL+  YA C 
Sbjct: 230 K-MLASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCK 288

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            + +A  +F+    +NVV+W  +++G+  + R  + + +F+ M +  + PN+ +  S L+
Sbjct: 289 LIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALN 348

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           +C  +  V++G+    +  K   +  ++F  + ++ +  + G I++   +   M      
Sbjct: 349 SCCGLEAVDRGREVHAVAHKL-GLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVV 407

Query: 406 SMWGSLLASCRNY 418
           S W S++  C  +
Sbjct: 408 S-WNSIIVGCAQH 419



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 5/286 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL   L +CA    P  G   H  I+  G   +   S  LI+FY+ C LI  A  +F++
Sbjct: 240 STLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFND 299

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              R +V W  ++  Y  N R  +A+ +F  M+R    P ++ +++S L +C     V  
Sbjct: 300 NVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLP-NQSSLTSALNSCCGLEAVDR 358

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H  A K  ++ ++FV  +L+ +Y KCG I+D   VF  M  +N V+W+S++ G  Q
Sbjct: 359 GREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQ 418

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +     AL LF +     ++ ++ T++ ++ AC     L +G+       K  FG  M  
Sbjct: 419 HGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKN-FGIEMTN 477

Query: 274 A--SSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
              SS+VD+  + G + +A  +   +  K N ++W  ++S    H+
Sbjct: 478 EHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHS 523


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/587 (36%), Positives = 338/587 (57%), Gaps = 23/587 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +C        GK  H   I  G  + T   N L   Y+K G +    + F  +
Sbjct: 181 TLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRI 240

Query: 95  PQRCIVSWNTIIGSYTTNGREQE-AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P + +++W T+I +   +    E  + LF++ML+ G+   +EFT++SV+  C    D+  
Sbjct: 241 PDKNVITWTTMISACAEDENYTELGLNLFLDMLK-GEVMPNEFTLTSVMSLCGTSLDMNL 299

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+  F  K     N+ V  + + +Y + G   +A R+FE M + + +TW++M++GF Q
Sbjct: 300 GKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQ 359

Query: 214 ------NELYE-----EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
                 ++L+      +AL +FR      ++ + FT SS++  C+ + AL QG+Q+HA  
Sbjct: 360 IMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQT 419

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            KTGF S++   S+LV+MY KCGC+  A   F  +  + +V W +MISG+S+H R  + +
Sbjct: 420 IKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAI 479

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE M  AG  PNE T++S+LSACS+ G+VE+   YFD+M  ++++ P + HY CMID+
Sbjct: 480 QLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDM 539

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
             R G + +AY  I    F+   ++W SL+A CR++ N+ELA  AA +L  ++P     +
Sbjct: 540 FVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETY 599

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIY 494
           +LL N+Y +  RW +VAR RKL +  ++   + +SW+ I+ K        R+HP+  E+Y
Sbjct: 600 VLLLNMYISTGRWRDVARVRKLSKHEDLGILRDRSWITIRDKVYFFKADDRSHPQSTELY 659

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL--LIHHSEKLALTFGLMCLCPGVPIR 552
             LE L+E+ K +GY+P    +L+D E+  K     L HHSE+LA+  GL+   PGV +R
Sbjct: 660 QLLETLLEKAKAIGYEPYQNTELYDSEEDGKPAAGSLKHHSERLAVALGLLKAPPGVTVR 719

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           I KN+ +C DCHS +KF S +A RE +VRD  R H F +G CSC DF
Sbjct: 720 ITKNITMCRDCHSSIKFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 198/386 (51%), Gaps = 15/386 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C    +    K  H  ++  G   D   +  L+N Y +CG    AR +FDEMP++ +
Sbjct: 85  LHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNV 144

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W  +I  YT N +   A+ +F+ ML+ G+ P S++T+  +L AC A  ++   KQ+H 
Sbjct: 145 VTWTALITGYTLNSQPVLALEVFVEMLKLGRYP-SDYTLGGMLSACVASHNIDLGKQVHG 203

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           + +K        +G +L  +Y K G +    R F+ +P++N +TW++M++   ++E Y E
Sbjct: 204 YTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTE 263

Query: 220 -ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
             L LF       +  N+FT++SV+  C     +  GKQV     K G  +N+   +S +
Sbjct: 264 LGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTM 323

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR---------HARS--VEVMILFEK 327
            +Y + G   +A  +F  +E+ +V+ WN MISGF++         HARS   + + +F  
Sbjct: 324 YLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRD 383

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           + ++ + P+  T+ S+LS CS +  +E+G+      +K    L +V   S ++++  + G
Sbjct: 384 LVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKT-GFLSDVVVNSALVNMYNKCG 442

Query: 388 LIHEAYDLILNMPFDATASMWGSLLA 413
            I  A    + MP   T   W S+++
Sbjct: 443 CIEYATKAFVEMP-TRTLVTWTSMIS 467



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           QEA+A    ML+EG++  S   V  +L  C     +   K LH   +K     ++FV T+
Sbjct: 64  QEAMA----MLKEGQSVQSAMYVP-LLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATS 118

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L++VY +CG   DA  +F+ MPE+N VTW++++ G+  N     AL +F     LG   +
Sbjct: 119 LVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPS 178

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            +T+  ++ AC     +  GKQVH    K G  S     +SL  +Y K G +      F 
Sbjct: 179 DYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFK 238

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMI-LFEKMQQAGLHPNEQTYISVLSAC 347
            I +KNV+ W TMIS  +      E+ + LF  M +  + PNE T  SV+S C
Sbjct: 239 RIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLC 291



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 11/190 (5%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           +A   +L T  + L  C+   A  +G+  HA+ I  G  +D + ++ L+N Y+KCG I  
Sbjct: 387 SAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEY 446

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A K F EMP R +V+W ++I  Y+ +GR  +A+ LF +M+  G  P +E T  S+L AC+
Sbjct: 447 ATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKP-NEITFVSLLSACS 505

Query: 147 AKRDVFECKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERN 200
               V E  +      + + ++  MD        ++D++ + G + DA    +    E N
Sbjct: 506 YAGLVEEAMRYFDMMQNEYHIEPLMDHY----GCMIDMFVRLGRLDDAYAFIKRKGFEPN 561

Query: 201 EVTWSSMVAG 210
           E  WSS+VAG
Sbjct: 562 EAIWSSLVAG 571



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 7/182 (3%)

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C    +L   K +H  + KTG   ++F A+SLV++Y +CG   DA  +F  + EKNVV W
Sbjct: 88  CIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTW 147

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             +I+G++ +++ V  + +F +M + G +P++ T   +LSAC     ++ GK      +K
Sbjct: 148 TALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIK 207

Query: 366 QHNV-LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC---RNYRNL 421
                + ++ +  C   +  ++G +         +P D     W +++++C    NY  L
Sbjct: 208 YGAASITSIGNSLCR--LYTKSGNLESGIRAFKRIP-DKNVITWTTMISACAEDENYTEL 264

Query: 422 EL 423
            L
Sbjct: 265 GL 266


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/582 (37%), Positives = 337/582 (57%), Gaps = 19/582 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C        G+  H   +  G +   +  N +I+ YSKCG I+ A  +F+ M
Sbjct: 75  TFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVM 134

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R ++SWN +I  YT  G  ++A+ LF  M   G     EFT +S L AC+    + E 
Sbjct: 135 PVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGF-LDEFTFTSTLKACSDLGAIKEG 193

Query: 155 KQLHVFALKAAM--DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
            Q+H F +        N  V  AL+D+Y KCG +  A RVF  + E++ ++W++++ G+ 
Sbjct: 194 NQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYA 253

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q     E++ LFR+ +   ++ + F +SS++   A  A + QGKQ+HA   K   G ++ 
Sbjct: 254 QEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDIS 313

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +S++DMY KCG + +A  +FS +  +NV+ W  MI+G+ +H    E + LF++MQ   
Sbjct: 314 VCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDS 373

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             P++ TY++VL  CSH G+VEKG+ YF  +   H +   V HY+CM+D+LGRAG + EA
Sbjct: 374 TEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEA 433

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            +L+ +MP +A   +W +LL++CR + +LEL +     L  ++ +N  N++++SNIYA  
Sbjct: 434 KNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADA 493

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
             W+E  R R+L++  ++KKE  +SWVEI         G   HP   +I+  L+++   M
Sbjct: 494 GYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRM 553

Query: 505 K-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP-----IRIMKNLR 558
           K +LGY    ++ LHDVE+  K + L  HSEKLA+  GL  +C G+      IR+ KNLR
Sbjct: 554 KEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAI--GLALVCGGLEEGRKVIRVFKNLR 611

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +CGDCH F+K  S+I     +VRD NRFH F +G CSC D+W
Sbjct: 612 VCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 208/388 (53%), Gaps = 19/388 (4%)

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           MG   D + SN LI  Y KCG +  A  VFD M +R +VSW  ++  +  NG   E++ L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M   G  P ++FT S+ L AC     +   +Q+H   +K   D    VG +++D+Y+
Sbjct: 61  FSKMGLSGVKP-NDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYS 119

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KCG I++A+ +FE MP RN ++W++M+AG+      E+AL+LF++ Q +G   ++FT +S
Sbjct: 120 KCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTS 179

Query: 242 VICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            + AC+ L A+ +G Q+HA L   GF    N   A +L+D+Y KCG +  A  VFS IEE
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE 239

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K+V+ W  +I G+++     E M LF +++++ +  +     S++   +   +V++GK  
Sbjct: 240 KHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQM 299

Query: 360 FDLMVKQHNVLPNVFHYSC---MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
               +K    +P+    S    ++D+  + G+I+EA  L   MP     S W  ++    
Sbjct: 300 HAFAIK----VPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVIS-WTVMITG-- 352

Query: 417 NYRNLELAEIAAK-----QLFGMEPDNA 439
            Y    L + A +     QL   EPD+ 
Sbjct: 353 -YGKHGLGKEAIRLFDEMQLDSTEPDDV 379


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 324/549 (59%), Gaps = 27/549 (4%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFIN 124
           D ++ N L++ +   G + GAR +F  MP   R + SWNT++   + +G   EA A+F+ 
Sbjct: 81  DAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLA 140

Query: 125 MLREGKTPYSE----FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           M       ++     F  +  +CA     + FE          A    N  + TA++  Y
Sbjct: 141 MPARNSISWNAMVSCFAHAGDMCAA---EECFE---------DAPDKENAVLWTAMVSGY 188

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTI 239
              G +  A + FE+MP R+ V+W+++VAG+V+N   E+AL +F+   +   +  N+ T+
Sbjct: 189 MDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTL 248

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           SSV+  C+ L+AL  G+QVH    K      + A +SLV MY KCG +  A  +FS +  
Sbjct: 249 SSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRI 308

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           ++V+ WN MISG++ H    E + LFEKM+  G+ PN  T+++VL+AC H GM + G   
Sbjct: 309 RDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQC 368

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F+ M + + +   V HYSCM+D+L RAG +  A  LI +MPF    S +G+LL + R Y+
Sbjct: 369 FERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYK 428

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N+E AE AA +L    P NAG ++ L+NIYA   +W +V+R R+ ++D+ V K    SWV
Sbjct: 429 NMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWV 488

Query: 480 EIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           EI G         R HP+++ I+ +L +L E MK +GY P+ +  LHDV++S K ++L+ 
Sbjct: 489 EINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMR 548

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSEKLA+ FGL+   PG+ +RI KNLR+CGDCH+  K  S+I  RE I+RD  RFHHF +
Sbjct: 549 HSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRS 608

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 609 GHCSCGDYW 617



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           STL + L  C+   A   G+  H     + L+        L++ Y KCG + GA K+F E
Sbjct: 246 STLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSE 305

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK----- 148
           M  R +++WN +I  Y  +G  +EA+ LF  M  +G  P +  T  +VL AC        
Sbjct: 306 MRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEP-NWITFVAVLTACIHTGMCDF 364

Query: 149 -RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
               FE  Q  V+ ++A +D      + ++D+  + G +  A  +  SMP
Sbjct: 365 GMQCFERMQ-EVYGIEARVDHY----SCMVDLLCRAGSLERAVSLIRSMP 409


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/585 (37%), Positives = 349/585 (59%), Gaps = 12/585 (2%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
            AN    E+S L + L +  R    + GK  HA  +   L+++    N LI+ YSKC  +
Sbjct: 206 DANLKPDEVS-LISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCV 264

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
           + A  VFD+M  + ++SW T+I +Y  N    EA+ L   +  +G        + S L A
Sbjct: 265 AYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKG-MDVDTMMIGSTLLA 323

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           C+  R +   K++H + LK  +  ++ +   ++DVYA CG I+ A+R+FES+  ++ V+W
Sbjct: 324 CSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSW 382

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +SM++ +V N L  EAL +F   +   +E +  T+ S++ A A L+AL +GK++H  + +
Sbjct: 383 TSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFR 442

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            GF       +SLVDMYA CG + +AY VF     K++VLW TMI+ +  H R    + L
Sbjct: 443 KGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVEL 502

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M+   L P+  T++++L ACSH G++ +GK   + M  ++ + P   HY+C++D+LG
Sbjct: 503 FSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLG 562

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RA  + EAY  + +M  + TA +W + L +CR + N +L EIAA++L  ++PD+ G+++L
Sbjct: 563 RANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVL 622

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           +SN++AA+ RW++V   R  ++   +KK    SW+E+  K        ++HP   +IY K
Sbjct: 623 ISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQK 682

Query: 497 LEKLVEEMKKL-GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           L ++ E+++K  GY P+T+  LH+V    K ++L  HSE+LA+ +GLM    G PIRI K
Sbjct: 683 LAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITK 742

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+C DCH+F K  S+   RE IVRD +RFHHF +G CSC DFW
Sbjct: 743 NLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/408 (30%), Positives = 214/408 (52%), Gaps = 9/408 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C       RG   H  II  G ++    +N L++ Y+KC  I GARK+FD M
Sbjct: 12  TFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRM 71

Query: 95  PQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            +R  +VSWN+II +Y+ NG+  EA+ LF  M + G    + +T+ + L AC        
Sbjct: 72  NERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAG-VGANTYTLVAALQACEDSSFKKL 130

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             ++H   LK+    +V+V  AL+ ++ + G +S A+R+F+ + E++ +TW+SM+AGF Q
Sbjct: 131 GMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQ 190

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N LY EAL  F   Q   L+ ++ ++ S++ A   L  L+ GK++HA   K    SN+  
Sbjct: 191 NGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRI 250

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMY+KC CV  A  VF  +  K+++ W T+I+ ++++    E + L  K+Q  G+
Sbjct: 251 GNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGM 310

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             +     S L ACS +  +   K      +K+   L ++   + +ID+    G I+ A 
Sbjct: 311 DVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRG--LSDLMMQNMIIDVYADCGNINYAT 368

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF---GMEPDN 438
            +  ++      S W S++ SC  +  L    +    L     +EPD+
Sbjct: 369 RMFESIKCKDVVS-WTSMI-SCYVHNGLANEALGVFYLMKETSVEPDS 414



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 171/324 (52%), Gaps = 21/324 (6%)

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           +R    P+  FT   VL AC    D+    ++H   +K   D  VFV  +L+ +YAKC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 186 ISDASRVFESMPERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
           I  A ++F+ M ERN+ V+W+S+++ +  N    EAL LFR  Q  G+  N +T+ + + 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           AC   +    G ++HA + K+    +++ A++LV M+ + G +  A  +F  ++EK+ + 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG-------- 356
           WN+MI+GF+++    E +  F  +Q A L P+E + IS+L+A   +G +  G        
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-C 415
           K++ D  ++  N L +++   C +     AGL+   +D ++N    +    W +++A+  
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCV---AYAGLV---FDKMINKDLIS----WTTVIAAYA 290

Query: 416 RNYRNLELAEIAAK-QLFGMEPDN 438
           +N  + E  ++  K Q  GM+ D 
Sbjct: 291 QNNCHTEALKLLRKVQTKGMDVDT 314



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 136/272 (50%), Gaps = 16/272 (5%)

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +VLG+ ++ FT   V+ AC  +  + +G ++H ++ K G+ S +F A+SLV MYAKC  +
Sbjct: 2   RVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDI 61

Query: 288 VDAYFVFSGIEEKN-VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + A  +F  + E+N VV WN++IS +S + + +E + LF +MQ+AG+  N  T ++ L A
Sbjct: 62  LGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQA 121

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           C      + G      ++K + VL +V+  + ++ +  R G +  A  +   +  +    
Sbjct: 122 CEDSSFKKLGMEIHAAILKSNQVL-DVYVANALVAMHVRFGKMSYAARIFDELD-EKDNI 179

Query: 407 MWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
            W S++A  +     N  L      Q   ++PD       L +I AA+       R   L
Sbjct: 180 TWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVS----LISILAAS------GRLGYL 229

Query: 465 IRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSK 496
           +   E+     K+W++    R    + ++YSK
Sbjct: 230 LNGKEIHAYAMKNWLD-SNLRIGNTLIDMYSK 260


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 319/527 (60%), Gaps = 14/527 (2%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML-REGKTPYSEFTVSSVLCAC 145
           AR+ FDE+P    V    +   Y  N     ++ LF  M+  +  +   E        A 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVT 203
           A   D      LH    K   +RN  V   +LD YAK G   +  A +VF++M ER+ V+
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 121

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHAV 261
           W+SM+A + QN +  EA+ L+ +   +G  ++ N   +S+V+ ACA   A+  GK +H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + + G   N++  +S+VDMY+KCG V  A   F  I+EKN++ W+ MI+G+  H R  E 
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 241

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           + +F +M+++GL PN  T+ISVL+ACSH G++++G+ +++ M ++  +   V HY CM+D
Sbjct: 242 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 301

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +LGRAG + EAY LI  M     A++WG+LL++CR ++N+ELAE++ K+LF ++  N+G 
Sbjct: 302 LLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGY 361

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEI 493
           ++LLSNIYA    W++V R R L++   ++K    S  E+KGK        ++HP+  EI
Sbjct: 362 YVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEI 421

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           YS LEKL+E M++ GY P T   LHD+++  K+  L  HSEKLA+ F LM   P   I I
Sbjct: 422 YSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHI 481

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KNLR+C DCH+ MKF ++I  RE I+RDL RFHHF +G CSC D+W
Sbjct: 482 IKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 22/218 (10%)

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
           DA R F+ +P+ N V  ++M +G+V+N L   +L LF RA +          +SV+   A
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELF-RAMIAS------DSASVVDEAA 54

Query: 248 GLAALIQGKQV---------HAVLCKTGFGSNMFAASSLVDMYAKCGC--VVDAYFVFSG 296
            L A     +V         HA++ K GF  N    ++++D YAK G   +  A  VF  
Sbjct: 55  ALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDT 114

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ--AGLHPNEQTYISVLSACSHIGMVE 354
           + E++VV WN+MI+ ++++  S E + L+ KM     G+  N     +VL AC+H G ++
Sbjct: 115 M-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQ 173

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            GK   + +V+   +  NV+  + ++D+  + G +  A
Sbjct: 174 TGKHIHNQVVRM-GLEENVYVGTSIVDMYSKCGRVEMA 210



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L A L +CA   A   GK  H +++ MGL  +      +++ YSKCG +  A + F ++
Sbjct: 158 ALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKI 217

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
            ++ I+SW+ +I  Y  +GR QEA+ +F  M R G  P +  T  SVL AC+
Sbjct: 218 KEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRP-NYITFISVLAACS 268


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/516 (40%), Positives = 303/516 (58%), Gaps = 10/516 (1%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP    VSW  +I +Y   G   EA+ +       G  P S FT   VL ACA   D+  
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDS-FTAVRVLTACARVADLET 59

Query: 154 CKQLHVFALKA-AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
            + +   A +   +  +VFV TA LD+Y KCG +  A  VF+ M  R+ V W +MV G+ 
Sbjct: 60  GEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            N    EAL LF   Q+ G + + +T+   + AC  L AL  G+Q   ++       N  
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPV 179

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+DMYAKCG   +A+ VF  + E+++++WN MI G            L  +M+++G
Sbjct: 180 LGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSG 239

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  N+ T+I +L +C+H G+V  G+ YF  M   + + P + HY CM+D+  RAGL+ EA
Sbjct: 240 VKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEA 299

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           + LI +MP  A A +WG+LL  C+ +RN +LAE A KQL  +EP N+GN+++LSNIY+ +
Sbjct: 300 HQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNS 359

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            RWE+ A+ R  ++   ++K  + SWVE+ GK         +HP   +IY+KL++L  EM
Sbjct: 360 GRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEM 419

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K +GY+P TE  + DVE+  K+  L+HHSEK+A+ F L+   PG  IR+ KNLR+C DCH
Sbjct: 420 KAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCH 479

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S +K  SRI  RE +VRD NRFH F +G CSC D+W
Sbjct: 480 SAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 123/255 (48%), Gaps = 3/255 (1%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G+      +   ++ Y KCG +  AR VFDEM  R  V+W  ++G Y +NG  +EA+ LF
Sbjct: 72  GVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLF 131

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             M  EG  P   +TV   L AC     +   +Q         +  N  +GTAL+D+YAK
Sbjct: 132 FAMQMEGAKPDC-YTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAK 190

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG  S+A  VF+ M ER+ + W++M+ G       + A  L  + +  G++ N  T   +
Sbjct: 191 CGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGL 250

Query: 243 ICACAGLAALIQGKQ-VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-K 300
           +C+C     +  G+Q  H +         +     +VD++++ G + +A+ +   +    
Sbjct: 251 LCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLA 310

Query: 301 NVVLWNTMISGFSRH 315
           N V+W  ++ G   H
Sbjct: 311 NAVVWGALLGGCKIH 325


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 322/572 (56%), Gaps = 45/572 (7%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L +C +     RGK  H +II   L  +    N L + Y++CG I  AR++FD M  R
Sbjct: 160 SVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIR 219

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +V+WN +I  Y  N + ++ + LF  M      P  + T SSVL A             
Sbjct: 220 NVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKP-DQVTASSVLGA------------- 265

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
                                 Y + G I +A +VF  + E++EV W+ M+ G  QN   
Sbjct: 266 ----------------------YIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKE 303

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           E+AL+LF    +     + +TISSV+ +CA LA+L  G+ VH      G   ++  +S+L
Sbjct: 304 EDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSAL 363

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           VDMY KCG   DA+ +FS ++ +NVV WN+MI G++ + + +E + L+E M +  L P+ 
Sbjct: 364 VDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDS 423

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VLSAC H G+VE+GK YF  M  QH + P   HY+CM+++ GR+G + +A DLI 
Sbjct: 424 VTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLIS 483

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +M  +  + +W ++L+ C    +++  E+AA+ L  + P NA  +++LSN+YAA  RW++
Sbjct: 484 SMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKD 543

Query: 458 VARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGY 509
           VA  R L++   VKK  + SW+EI  +        R HP    I+ +L +L+ ++++ G+
Sbjct: 544 VASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGF 603

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV-PIRIMKNLRICGDCHSFMK 568
            P T   LHD  +  K E + +HSEKLAL +GL+    GV PIRI+KN+R C DCH FMK
Sbjct: 604 SPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMK 663

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           F S I  R  I+RD NRFHHF  G CSC D+W
Sbjct: 664 FVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/395 (30%), Positives = 196/395 (49%), Gaps = 51/395 (12%)

Query: 52  GKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++ HA K+       D  + N +++ Y+K GL+   R +FD MP R  VS+NT+I  + 
Sbjct: 72  GEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFA 131

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NGR   A+ +F+ M +EG  P +E+T  SVL AC    D+   KQ+H   +   +  NV
Sbjct: 132 GNGRGGPALGVFLRMQKEGLKP-TEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNV 190

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FV  AL D+YA+CG I  A R+F+ M  RN VTW+ M++G+++N   E+ + LF   QV 
Sbjct: 191 FVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVS 250

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            L+ +Q T SSV+ A                                   Y + G + +A
Sbjct: 251 NLKPDQVTASSVLGA-----------------------------------YIQAGYIDEA 275

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  I EK+ V W  MI G +++ +  + ++LF +M      P+  T  SV+S+C+ +
Sbjct: 276 RKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKL 335

Query: 351 -----GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
                G V  GK++  LM    ++L +    S ++D+  + G+  +A+ +   M      
Sbjct: 336 ASLYHGQVVHGKAF--LMGVNDDLLVS----SALVDMYCKCGVTRDAWTIFSTMQTRNVV 389

Query: 406 SMWGSLLAS-CRNYRNLELAEIAAKQL-FGMEPDN 438
           S W S++     N ++LE   +    L   ++PD+
Sbjct: 390 S-WNSMIGGYALNGQDLEALSLYENMLEENLKPDS 423



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 38/264 (14%)

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQL----HVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
           P S    + +   C    DV + K+L    H+   K     + F+   LL++YAK G IS
Sbjct: 19  PASHECYTRLALECFRASDVDQAKRLKSHMHLHLFKP---NDTFIHNRLLNLYAKSGEIS 75

Query: 188 DASR-------------------------------VFESMPERNEVTWSSMVAGFVQNEL 216
            A +                               +F++MP R+ V+++++++GF  N  
Sbjct: 76  HARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGR 135

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
              AL +F R Q  GL+  ++T  SV+ AC  L  L +GKQ+H  +     G N+F  ++
Sbjct: 136 GGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNA 195

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L D+YA+CG +  A  +F  +  +NVV WN MISG+ ++ +  + + LF +MQ + L P+
Sbjct: 196 LTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPD 255

Query: 337 EQTYISVLSACSHIGMVEKGKSYF 360
           + T  SVL A    G +++ +  F
Sbjct: 256 QVTASSVLGAYIQAGYIDEARKVF 279



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + + SCA+  +   G+V H K   MG+N+D L S+ L++ Y KCG+   A  +F  M
Sbjct: 324 TISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTM 383

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN++IG Y  NG++ EA++L+ NML E   P S  T   VL AC     V E 
Sbjct: 384 QTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDS-VTFVGVLSACVHAGLVEEG 442

Query: 155 KQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           K+     + +  ++        +++++ + G +  A  +  SM  E N + W+++++
Sbjct: 443 KEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 343/604 (56%), Gaps = 45/604 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ CAR ++       H++II  G +  +L SN L++ Y KCGLI  A ++FDEMP R  
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW +I+ ++      +  +++   M          F  + ++ AC++   +   KQ+H 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 160 -FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F L    D  V V ++L+D+Y KCG   DA  VF+S+  +N V+W+SM++G+ ++    
Sbjct: 130 RFMLSFFCDDEV-VKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKC 188

Query: 219 EALILFRRAQVLGL---------------------EYNQ-----------FTISSVICAC 246
           EA+ LF +A V  L                      +N+             +SSV+  C
Sbjct: 189 EAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGC 248

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A LA L  GKQ+H ++   GF S +F +++LVDMYAKC  ++ A  +F  +  K+V+ W 
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I G ++H ++ E + L+++M  + + PNE T++ +L ACSH G+V +G+  F  M   
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           +++ P++ HY+C++D+L R+G + EA +L+  +PF      W SLL++C  + NLE+   
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR- 485
            A ++  ++P++   ++LLSN+YA    W  V++ RKL+   EV+KE   S ++  GK  
Sbjct: 429 IADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDF-GKDS 487

Query: 486 ---------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                    +HP   EI + L+ L  EM+K GY P T   L+D+E   K++ L  HSE+L
Sbjct: 488 QVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERL 547

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A+ +GL+   PG  IRI+KNLRICGDCH+ +KF S I  RE +VRD  R+HHF  G CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 597 WDFW 600
            DFW
Sbjct: 608 NDFW 611



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + +  CA       GK  H  +I +G  +    SN L++ Y+KC  I  A+ +F  M
Sbjct: 240 VLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRM 299

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ ++SW +II     +G+ +EA+ L+  M+     P +E T   +L AC+    V   
Sbjct: 300 PRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKP-NEVTFVGLLYACSHAGLVSRG 358

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           ++L        +++ ++   T LLD+ ++ G + +A  + + +P + +E TW+S+++ 
Sbjct: 359 RELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSA 416


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 23/578 (3%)

Query: 40   LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            L SCA  R    G+  H   +  GL+ DT  SN L+  Y  CG  S + ++F+ M +  I
Sbjct: 483  LSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDI 542

Query: 100  VSWNTIIGSY-TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
            VSWN+I+G   +++    E+V +F NM+R G TP ++ T  ++L A +    +   KQ+H
Sbjct: 543  VSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTP-NKVTFVNLLSALSPLSVLELGKQVH 601

Query: 159  VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQNELY 217
               LK     +  V  AL+  YAK G +    ++F SM   R+ V+W+SM++G++ N   
Sbjct: 602  AVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHL 661

Query: 218  EEAL----ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +E +    ++    Q+L    +  T S V+ ACA +AAL +G ++HA   ++   S++  
Sbjct: 662  QETMDCVWLMMHSNQML----DCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVV 717

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             S+L+DMY+KCG +  A  VF+ + +KN   WN+MISG++RH    + + +FE+MQ+ G 
Sbjct: 718  ESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGA 777

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P+  T++SVLSACSH G+V++G  YF++M + H +LP++ HYSC+ID+LGRAG + +  
Sbjct: 778  CPDHVTFVSVLSACSHAGLVDRGLDYFEMM-EDHGILPHIEHYSCVIDLLGRAGKLLKIQ 836

Query: 394  DLILNMPFDATASMWGSLLASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
            + I  MP      +W ++L +CR  ++   ++L + A++ L  +EP N  N++L SN YA
Sbjct: 837  EYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYA 896

Query: 451  ANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVE 502
            A  RWE+ A+AR  +  + +KKE  +SWV         I G R+HP   EIY KL  L++
Sbjct: 897  ATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNFLIQ 956

Query: 503  EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            ++K  GY P TE  L+D+E+  K+ELL +HSEKLA+ F L      VPIRIMKNLR+CGD
Sbjct: 957  KIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRIMKNLRVCGD 1016

Query: 563  CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            CH+  ++ S+I  R+ I+RD  RFHHF +G CSC D+W
Sbjct: 1017 CHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 184/361 (50%), Gaps = 5/361 (1%)

Query: 57  AKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
           A+++  G ++D    + L++ +++ G++  A+ +F  + +R  V+ N +I         +
Sbjct: 294 ARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSE 353

Query: 117 EAVALFINMLREGKTPYSEFTV--SSVLCACAAKRDVFECKQLHVFALKAAM-DRNVFVG 173
           EAV +F+            F V  S+V      +  +   +++H   L+  + D  + + 
Sbjct: 354 EAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALS 413

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
             L+++YAKCG I  ASRVF  +  R+ V+W+++++   QN   E A++ +   +   + 
Sbjct: 414 NGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCIS 473

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            + F   S + +CA L  L  G+QVH    K G   +   +++LV MY  CG   +++ +
Sbjct: 474 PSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEI 533

Query: 294 FSGIEEKNVVLWNTMISGF-SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           F+ + E ++V WN+++    S HA + E + +F  M ++GL PN+ T++++LSA S + +
Sbjct: 534 FNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSV 593

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +E GK    +++K   +  N    + ++    ++G +     L  +M     A  W S++
Sbjct: 594 LELGKQVHAVVLKHGAIEDNAVD-NALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMI 652

Query: 413 A 413
           +
Sbjct: 653 S 653



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 163/325 (50%), Gaps = 17/325 (5%)

Query: 44  ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN 103
             E AP R    H +++  GL +D   SN L+N Y+K   ++ AR+VFD M +R  VSW 
Sbjct: 70  GEEAAPER---LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWT 126

Query: 104 TIIGSYTTNGREQEAVALFINMLREGK--TPYSEFTVSSVLCACA-AKRDVFE-CKQLHV 159
            ++  Y  +G   EA  +F  ML EG   +  + FT  SVL AC  A  D+     Q+H 
Sbjct: 127 CLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHG 186

Query: 160 FALKAAMDRNVFVGTALLDVYAKC--GLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
              K     N  V  AL+ +Y  C  GL   A +VF++ P R+ +TW+++++ + +    
Sbjct: 187 LVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYV 246

Query: 218 EEALILF----RRAQVLGLEYNQFTISSVICACAGLAALIQG--KQVHAVLCKTGFGSNM 271
                LF         + L  N+ T  S+I A + L++   G   QV A + K+G  S++
Sbjct: 247 VSTFTLFMAMLHDDSAIELRPNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSGSSSDL 305

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           +  S+LV  +A+ G + +A  +F  ++E+N V  N +I G  +   S E + +F   + +
Sbjct: 306 YVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDS 365

Query: 332 GLHPNEQTYISVLSACSHIGMVEKG 356
            +  N  T++ +LSA +   + E G
Sbjct: 366 FV-VNTDTFVVLLSAVAEFSIPEDG 389



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 14/188 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA   A  RG   HA  I   L +D +  + L++ YSKCG I  A KVF+ M
Sbjct: 682 TFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSM 741

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----- 149
            Q+   SWN++I  Y  +G  ++A+ +F  M R G  P    T  SVL AC+        
Sbjct: 742 SQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACP-DHVTFVSVLSACSHAGLVDRG 800

Query: 150 -DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSM 207
            D FE  + H       +  ++   + ++D+  + G +         MP + N + W ++
Sbjct: 801 LDYFEMMEDH------GILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTV 854

Query: 208 VAGFVQNE 215
           +    Q++
Sbjct: 855 LVACRQSK 862


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/575 (36%), Positives = 338/575 (58%), Gaps = 12/575 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T+ + + +C        G+  H  +I  G   +   +N LI  +S  G    A  VF
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            +M  + +VSW  +I  Y  NG  ++AV  +  M  EG  P  E T++SVL ACA    +
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP-DEITIASVLSACAGLGLL 413

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            +   LH FA +  +   V V  +L+D+Y+KC  I  A  VF  +P +N ++W+S++ G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             N    EAL  F++  +L L+ N  T+ SV+ ACA + AL  GK++HA   +TG G + 
Sbjct: 474 RLNYRSFEALFFFQQ-MILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F  ++L+DMY +CG +  A+  F+  E K+V  WN +++G+++  +    + LF KM ++
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            ++P+E T+ S+L ACS  GMV  G  YF+ M  + ++ PN+ HY+ ++D+LGRAG + +
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLED 651

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY+ I  MP D   ++WG+LL +CR Y+N+EL E+AA+ +F M+  + G ++LL N+YA 
Sbjct: 652 AYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYAD 711

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEE 503
           + +W+EVAR RK++R++ +  +   SWVE+ G+ +        HP+I EI + LE   E+
Sbjct: 712 SGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEK 771

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           M+  G     +    D+ D+ K E+   HSE+LA+ FGL+   PG PI + KNL +C +C
Sbjct: 772 MEATGLSMSKDSRRDDI-DASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENC 830

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
           H+ +KF S++  R   VRD  +FHHF +G CSC D
Sbjct: 831 HNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 213/410 (51%), Gaps = 4/410 (0%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           + E  T  A L+ C  +RA   G   H+ +            N L++ + + G +  A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VF +M +R + SWN ++G Y   G   EA+ L+  ML  G  P   +T   VL  C    
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP-DVYTFPCVLRTCGGLP 209

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   +++H+  ++   + +V V  AL+ +Y KCG I  A  VF+ MP R+ ++W++M++
Sbjct: 210 DLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMIS 269

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+ +N++  E L LF   +   ++ +  T++SVI AC  L     G++VH  + KTGF +
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            +   +SL+ M++  GC  +A  VFS +E K++V W  MISG+ ++    + +  +  M+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G+ P+E T  SVLSAC+ +G+++KG    +    +  +   V   + +ID+  +   I
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEF-ADRTGLTSYVIVANSLIDMYSKCRCI 448

Query: 390 HEAYDLILNMPFDATASMWGSLLASCR-NYRNLELAEIAAKQLFGMEPDN 438
            +A ++   +P     S W S++   R NYR+ E      + +  ++P++
Sbjct: 449 DKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFFQQMILSLKPNS 497



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 165/333 (49%), Gaps = 6/333 (1%)

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFAL 162
           N++I      G  ++A+ + ++ ++E +    E T  ++L  C  KR   E  ++H +  
Sbjct: 63  NSLILELCLKGDLEKAL-IHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVS 121

Query: 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
           K      V +G ALL ++ + G + +A  VF  M ER+  +W+ +V G+ +   ++EAL 
Sbjct: 122 KTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
           L+ R   +G+  + +T   V+  C GL  L +G++VH  + + GF S++   ++L+ MY 
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYV 241

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           KCG +  A  VF  +  ++ + WN MISG+  +   +E + LF  M++  + P+  T  S
Sbjct: 242 KCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTS 301

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           V+SAC  +G    G+     ++K    +  V   + +I +    G   EA  +   M F 
Sbjct: 302 VISACEALGDERLGREVHGYVIKT-GFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
              S W ++++    Y    L E A +    ME
Sbjct: 361 DLVS-WTAMISG---YEKNGLPEKAVETYTIME 389


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 327/575 (56%), Gaps = 38/575 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  +  ++C    A   GK  H   +      D      L++ Y+K G I  AR  F+E+
Sbjct: 242 TFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEI 301

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ ++ W+ +I  Y  + + +EAV +F  M R+     ++FT +SVL ACA    +   
Sbjct: 302 PKKDVIPWSFMIARYAQSDQSKEAVEMFFQM-RQALVLPNQFTFASVLQACATMEGLNLG 360

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVAGFVQ 213
            Q+H   +K  +  +VFV  AL+DVYAKCG + ++  +F   P RN+VT W++++ G VQ
Sbjct: 361 NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQ 420

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               E+AL LF       ++  + T SS + ACA LAAL  G Q+H++  KT F  ++  
Sbjct: 421 LGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVV 480

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYAKCG + DA  VF  + +++ V WN MISG+S H                GL
Sbjct: 481 TNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMH----------------GL 524

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
                       AC++ G++++G++YF  M++ H + P + HY+CM+ +LGR G + +A 
Sbjct: 525 ------------ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAV 572

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI  +PF  +  +W +LL +C  + ++EL  I+A+ +  MEP +   H+LLSN+YA  +
Sbjct: 573 KLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAK 632

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RW+ VA  RK ++   VKKE   SW+E +        G  +HP +  I   LE L  + K
Sbjct: 633 RWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTK 692

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           K GY P     L DVED  K+ LL  HSE+LAL+FG++    G PIRIMKNLRIC DCH+
Sbjct: 693 KAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHA 752

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  S++  RE +VRD+NRFHHF  G CSC D+W
Sbjct: 753 AIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 206/379 (54%), Gaps = 14/379 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ C ++  P RGK  H +I+  G   D    NIL+N Y K   +  A K+FDEMP+R  
Sbjct: 45  LQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNT 104

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGK--TPYSEFTVSSVLCACAAKRDVFECKQL 157
           +S+ T+I  Y  + R  EA+ LF+ + REG    P+   T+  +L +        +C +L
Sbjct: 105 ISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS-------MDCGEL 157

Query: 158 ----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
               H    K   + N FVGTAL+D Y+ CG +  A  VF+ +  ++ V+W+ MV  F +
Sbjct: 158 GWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAE 217

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N+ ++EAL LF + +++G + N FT +SV  AC GL A   GK VH    K+ +  +++ 
Sbjct: 218 NDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYV 277

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             +L+D+Y K G + DA   F  I +K+V+ W+ MI+ +++  +S E + +F +M+QA +
Sbjct: 278 GVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALV 337

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN+ T+ SVL AC+ +  +  G      ++K   +  +VF  + ++D+  + G +  + 
Sbjct: 338 LPNQFTFASVLQACATMEGLNLGNQIHCHVIKI-GLHSDVFVSNALMDVYAKCGRMENSM 396

Query: 394 DLILNMPFDATASMWGSLL 412
            L    P     + W +++
Sbjct: 397 XLFAESPHRNDVTPWNTVI 415



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 4/275 (1%)

Query: 129 GKTPYSEFT---VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           G    SEF     ++ L  C  K +    K LH   LK     ++F    LL++Y K   
Sbjct: 29  GHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDF 88

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + DAS++F+ MPERN +++ +++ G+ ++  + EA+ LF R    G E N F  ++++  
Sbjct: 89  LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKL 148

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
              +     G  +HA + K G  SN F  ++L+D Y+ CG V  A  VF GI  K++V W
Sbjct: 149 LVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSW 208

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             M++ F+ +    E + LF +M+  G  PN  T+ SV  AC  +   + GKS     +K
Sbjct: 209 TGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALK 268

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
               L +++    ++D+  ++G I +A      +P
Sbjct: 269 SRYEL-DLYVGVALLDLYTKSGDIDDARXAFEEIP 302


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 341/577 (59%), Gaps = 15/577 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    ++ CA  +     +  H+ ++  G ++       L++ YSK G +  A  +F  
Sbjct: 307 STYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLL 366

Query: 94  MP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           M   + +VSW  +I     NG    A ALF  M  +G  P ++FT S++L A  A     
Sbjct: 367 MSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAP-NDFTYSTILTASVASLP-- 423

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              Q+H   +K   +    VGTALL  Y+K     +A  +F+ + +++ V+WS+M+  + 
Sbjct: 424 --PQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYA 481

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNM 271
           Q    + A  +F +  + GL+ N+FTISSVI ACA   A +  G+Q HA+  K      +
Sbjct: 482 QAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDAL 541

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             +S+LV MYA+ G +  A  +F    ++++V WN+M+SG+++H  S + + +F +M+  
Sbjct: 542 CVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAE 601

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+  +  T++SV+  C+H G+VE+G+ YFD M + + + P + HY+CM+D+  RAG + E
Sbjct: 602 GIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDE 661

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A  LI  M F A   +W +LL +C+ ++N+EL ++AA++L  +EP ++  ++LLSNIY+A
Sbjct: 662 AMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSA 721

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
             +W+E    RKL+   +VKKE   SW++IK K        ++HP   +IY+KL  +  +
Sbjct: 722 AGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTK 781

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +K+ GY P+T   LH+V + +K+ +L  HSE+LAL FGL+   PG P+ I KNLR+CGDC
Sbjct: 782 LKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDC 841

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+ +K  S+I  RE ++RD +RFHHF +G CSC DFW
Sbjct: 842 HTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 185/366 (50%), Gaps = 14/366 (3%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           +  TL  ++ +   +     +GAR+ FDE+P R  +  +  +  +   G   +A+  F++
Sbjct: 35  SQSTLACSVPLENQTNLNDATGARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLD 92

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR-NVFVGTALLDVYAKC 183
           + R          +  VL  C +  D    KQLH   ++   DR +V VGT+L+D+Y K 
Sbjct: 93  VHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKW 152

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
             + D  +VFE+MP+RN VTW+S++ G++Q+    + + LF R +  G+  N  T +SV+
Sbjct: 153 HSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVL 212

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
              A    +  G++VHA   K G  S +F  +SL++MYAKCG V +A  VF G+E +++V
Sbjct: 213 SVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMV 272

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WNT+++G   +   +E + LF   + +     + TY +V+  C++I  +   +      
Sbjct: 273 SWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQL---- 328

Query: 364 VKQHNVLPNVFH-----YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
               +VL   FH      + ++D   +AG +  A D+ L M        W +++  C   
Sbjct: 329 --HSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQN 386

Query: 419 RNLELA 424
            ++ LA
Sbjct: 387 GDVPLA 392



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 191/381 (50%), Gaps = 9/381 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L   A +     G+  HA+ +  G  +     N L+N Y+KCGL+  AR VF  M
Sbjct: 207 TFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGM 266

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWNT++     NG + EA+ LF +  R   T  ++ T ++V+  CA  + +   
Sbjct: 267 ETRDMVSWNTLMAGLVLNGHDLEALQLFHDS-RSSITMLTQSTYATVIKLCANIKQLGLA 325

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
           +QLH   LK        V TAL+D Y+K G + +A  +F  M   +N V+W++M+ G +Q
Sbjct: 326 RQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQ 385

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     A  LF R +  G+  N FT S+++   A +A+L    Q+HA + KT +      
Sbjct: 386 NGDVPLAAALFSRMREDGVAPNDFTYSTIL--TASVASL--PPQIHAQVIKTNYECTSIV 441

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+  Y+K     +A  +F  I++K+VV W+ M++ +++   S     +F KM   GL
Sbjct: 442 GTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGL 501

Query: 334 HPNEQTYISVLSAC-SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            PNE T  SV+ AC S    V+ G+ +  + +K H     +   S ++ +  R G I E+
Sbjct: 502 KPNEFTISSVIDACASPTAGVDLGRQFHAISIK-HRCHDALCVSSALVSMYARKGSI-ES 559

Query: 393 YDLILNMPFDATASMWGSLLA 413
              I     D     W S+L+
Sbjct: 560 AQCIFERQTDRDLVSWNSMLS 580


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 345/590 (58%), Gaps = 14/590 (2%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           + S S      +  T  + L +C+      +G+   A+ +  G  +D++  N LIN YSK
Sbjct: 151 MVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSK 210

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG +  ARKVFD +  R +++WNT+I  Y   G   +A+ LF  M      P +  T   
Sbjct: 211 CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP-NVVTFIG 269

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL-ISDASRVFESMPER 199
           +L AC    D+ + + +H    +   + ++ +G  LL++Y KC   + +A +VFE +  R
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + +TW+ ++  +VQ    ++AL +F++ Q+  +  N+ T+S+V+ ACA L A  QGK VH
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVH 389

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A++      +++   +SL++MY +CG + D   VF+ I +K++V W+T+I+ +++H  S 
Sbjct: 390 ALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSR 449

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
             +  F ++ Q GL  ++ T +S LSACSH GM+++G   F  MV  H + P+  H+ CM
Sbjct: 450 TGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCM 509

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+L RAG +  A +LI +MPF   A  W SLL+ C+ + + + A   A +LF +E ++ 
Sbjct: 510 VDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDE 569

Query: 440 GNHL-LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRI 490
            + + LLSN+YA   RW++V   RK       +K    S++EI         G ++HP  
Sbjct: 570 HSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEE 626

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
             I +++++L ++MK  GY P+    LH+V++  K+++L +HSEKLA+ +GL+   PG P
Sbjct: 627 ELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTP 686

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + I+KNLR C DCH+  KF SRI GR+ +VRD  RFHHF NGSCSC D+W
Sbjct: 687 LHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 200/377 (53%), Gaps = 8/377 (2%)

Query: 43  CARERAPVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
           C+  +   +G++ HA I+   L   D +    LI  Y++C  +  ARK FDEM ++ +V+
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 102 WNTIIGSYTTNGREQEAVALFINMLR---EGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           WN +I  Y+ NG  + A+ ++ +M+    EG  P    T SS L AC+   D+ + +++ 
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKP-DAITFSSALYACSVVGDISQGREIE 186

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              + +    +  V  AL+++Y+KCG +  A +VF+ +  R+ + W++M++G+ +     
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           +AL LF+R      + N  T   ++ AC  L  L QG+ +H  + + G+ S++   + L+
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLL 306

Query: 279 DMYAKCGCVV-DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +MY KC   + +A  VF  +  ++V+ WN +I  + ++ ++ + + +F++MQ   + PNE
Sbjct: 307 NMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE 366

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T  +VLSAC+ +G   +GK+   L+         V   S M ++  R G + +   +  
Sbjct: 367 ITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLM-NMYNRCGSLDDTVGVFA 425

Query: 398 NMPFDATASMWGSLLAS 414
            +  D +   W +L+A+
Sbjct: 426 AIR-DKSLVSWSTLIAA 441



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 203/380 (53%), Gaps = 10/380 (2%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y KCG ++ A  VF  +     VSW  I+ ++  NG  +EA+  +  M+ EG  P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAA-MDRNVFVGTALLDVYAKCGLISDASRVFES 195
            V ++   C++ +D+ + + LH   L+   ++ ++ +GTAL+ +YA+C  +  A + F+ 
Sbjct: 61  FVVAI-GVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFR---RAQVLGLEYNQFTISSVICACAGLAAL 252
           M ++  VTW++++AG+ +N  +  AL +++        G++ +  T SS + AC+ +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
            QG+++ A    +G+ S+    ++L++MY+KCG +  A  VF  ++ ++V+ WNTMISG+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           ++   + + + LF++M      PN  T+I +L+AC+++  +E+G++     VK+H    +
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRA-IHRKVKEHGYESD 298

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           +   + ++++  +     E    +           W  L+ +   Y   + A    KQ  
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQ-- 356

Query: 433 GMEPDN-AGNHLLLSNIYAA 451
            M+ +N A N + LSN+ +A
Sbjct: 357 -MQLENVAPNEITLSNVLSA 375


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 337/607 (55%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----------------------------- 65
           T    L+SCA+ +A   G+  H  ++ +G +                             
Sbjct: 105 TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 164

Query: 66  --NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
              D ++   LI  Y+  G I+ A+K+FDE+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 165 SHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFK 224

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ SV+ ACA    +   +Q+H +        N+ +  AL+D+Y KC
Sbjct: 225 EMMKTNVRP-DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC 283

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +FE +  ++ ++W++++ G+    LY+EAL+LF+     G   N  T+ S++
Sbjct: 284 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 343

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A  VF  I  ++
Sbjct: 344 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 403

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     +F +M++  + P++ T++ +LSACSH GM++ G+  F 
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR 463

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + + P + HY CMID+LG +GL  EA ++I  M  +    +W SLL +C+ Y N+
Sbjct: 464 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANV 523

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E  A+ L  +EP N G+++LLSNIYA   RW EVA+ R L+ D  +KK    S +EI
Sbjct: 524 ELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEI 583

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HHS
Sbjct: 584 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 643

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 644 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 703

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 704 CSCNDYW 710



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 204/393 (51%), Gaps = 39/393 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSY 109
           ++ HA++I  GL+N     + LI F        G   A  VF+ + +  ++ WNT+   +
Sbjct: 19  RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +     A+ L++ M+  G  P + +T   +L +CA  +   E +Q+H   LK   D +
Sbjct: 79  ALSSDPVSALYLYVCMISLGLLP-NCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 137

Query: 170 VFVGTALLDVYAKCGLISDASRVFES-------------------------------MPE 198
           ++V T+L+ +Y + G + DA +VF+                                +P 
Sbjct: 138 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 197

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           ++ V+W++M++G+ +    +EAL LF+      +  ++ T+ SV+ ACA  A++  G+QV
Sbjct: 198 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 257

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H+ +   GFGSN+   ++L+D+Y KCG V  A  +F G+  K+V+ WNT+I G++     
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYS 377
            E ++LF++M ++G  PN+ T +S+L AC+H+G +E G+     + K+   + N   H +
Sbjct: 318 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 377

Query: 378 CMIDILGRAGLIHEA---YDLILNMPFDATASM 407
            +ID+  + G I  A   +D ILN    +  +M
Sbjct: 378 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAM 410



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 16/125 (12%)

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF-------- 292
           S++  C  L +L   + +HA + KTG  +  +A S L++      CV+  +F        
Sbjct: 7   SLLHNCKTLQSL---RMIHAQMIKTGLHNTNYALSKLIEF-----CVLSPHFDGLPYAIS 58

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  I+E N+++WNTM  G +  +  V  + L+  M   GL PN  T+  +L +C+    
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 118

Query: 353 VEKGK 357
             +G+
Sbjct: 119 FREGQ 123


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/582 (38%), Positives = 348/582 (59%), Gaps = 19/582 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   + +C      +R    HA  +  GL++     N LI  YSK G +  AR++F  +
Sbjct: 142 TLSGIITACGINVGLIRQ--LHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWL 199

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            + R  VSWN+++ +Y  +    +A+ L++ M   G      FT++SVL A    +D+  
Sbjct: 200 SEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLI-VDIFTLASVLTAFTNVQDLLG 258

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCG-LISDASRVFESMPERNEVTWSSMVAGF- 211
             Q H   +K+   +N  VG+ L+D+Y+KCG  + D  +VF+ +   + V W++M++G+ 
Sbjct: 259 GLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYS 318

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           +  +L +EAL  FR+ QV+G   +  ++  VI AC+ +++  QG+QVH +  K    SN 
Sbjct: 319 LYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNR 378

Query: 272 FAAS-SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            + + +L+ MY+KCG + DA  +F  + E N V +N+MI+G+++H    + + LF++M +
Sbjct: 379 ISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLE 438

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  P   T+ISVL+AC+H G VE GK YF++M ++  + P   H+SCMID+LGRAG + 
Sbjct: 439 MGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLS 498

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA  LI  +PFD     W +LL +CR + N+ELA  AA +L  ++P NA  +++L+NIY+
Sbjct: 499 EAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYS 558

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
            N R ++ A  RKL+RD  VKK+   SW+E+  + +        HP I +I   LE+++ 
Sbjct: 559 DNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMR 618

Query: 503 EMKKLGYKPETEHDLHDVED---SRKQEL-LIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           ++KK+GY PE    L   +D    R++EL L HHSEKLA++FGLM    G PI + KNLR
Sbjct: 619 KIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLR 678

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           IC DCH+ +K+ S +  RE  VRD +RFH F +G CSC  +W
Sbjct: 679 ICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 228/476 (47%), Gaps = 74/476 (15%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV-- 90
           L   +  L++C   R    GK  HA  I   +   T  SN  +  YSKC  +S AR+V  
Sbjct: 8   LHNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFD 67

Query: 91  -----------------------------FDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                                        FDEMPQ   VS+NT+I +Y   G  Q A  L
Sbjct: 68  HTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQL 127

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F+ M RE       FT+S ++ AC    +V   +QLH  ++   +D  V VG AL+  Y+
Sbjct: 128 FLEM-REAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYS 184

Query: 182 KCGLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           K G + +A R+F  + E R+EV+W+SMV  ++Q+    +AL L+    V GL  + FT++
Sbjct: 185 KNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLA 244

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC-GCVVDAYFVFSGIEE 299
           SV+ A   +  L+ G Q HA L K+G+  N    S L+D+Y+KC GC++D   VF  I  
Sbjct: 245 SVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 300 KNVVLWNTMISGFSRHAR-SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            ++VLWNTMISG+S +   S E +  F ++Q  G  P++ + + V+SACS++    +G+ 
Sbjct: 305 PDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQ 364

Query: 359 YFDLMVKQH-----------------------------NVLP--NVFHYSCMIDILGRAG 387
              L +K                               + +P  N   Y+ MI    + G
Sbjct: 365 VHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHG 424

Query: 388 LIHEAYDL---ILNMPFDATASMWGSLLASCRNYRNLELAEI---AAKQLFGMEPD 437
           +  ++  L   +L M F  T   + S+LA+C +   +E  +I     KQ FG+EP+
Sbjct: 425 MGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE 480



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 154/299 (51%), Gaps = 9/299 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC-GLISGARK 89
            ++ TL + L +    +  + G   HAK+I  G + ++   + LI+ YSKC G +   RK
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRK 297

Query: 90  VFDEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           VFDE+    +V WNT+I  Y+       EA+  F  +   G  P  + ++  V+ AC+  
Sbjct: 298 VFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRP-DDCSLVCVISACSNM 356

Query: 149 RDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
               + +Q+H  ALK  +  N + V  AL+ +Y+KCG + DA  +F++MPE N V+++SM
Sbjct: 357 SSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSM 416

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +AG+ Q+ +  ++L LF+R   +G      T  SV+ ACA    +  GK ++  + K  F
Sbjct: 417 IAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGK-IYFNMMKQKF 475

Query: 268 GSNMFAA--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMI 323
           G    A   S ++D+  + G + +A  +   I  +     W+ ++     H  +VE+ I
Sbjct: 476 GIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHG-NVELAI 533



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 135/276 (48%), Gaps = 7/276 (2%)

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           D NVF    L+  YAK   +  A ++F+ MP+ + V++++++A + +    + A  LF  
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            +   L+ + FT+S +I AC     LI  +Q+HA+   TG  S +   ++L+  Y+K G 
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNGF 188

Query: 287 VVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
           + +A  +F  + E+++ V WN+M+  + +H    + + L+ +M   GL  +  T  SVL+
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT 248

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           A +++  +  G  +   ++K      N    S +ID+  + G        + +   +   
Sbjct: 249 AFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 406 SMWGSLLASCRNYRNLE---LAEIAAKQLFGMEPDN 438
            +W ++++    Y +L    L      Q+ G  PD+
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDD 343


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/571 (35%), Positives = 336/571 (58%), Gaps = 10/571 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T  + L +C+     +  K+ HA II  G ++  +  N L+  Y K G++  A+KV   M
Sbjct: 501  TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 560

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
            PQ   V+WN +IG +  N    EAV  +  ++RE   P +  T+ SVL AC+A  D+ + 
Sbjct: 561  PQPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITMVSVLGACSAPDDLLKH 619

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
               +H   +    + + +V  +L+ +YAKCG ++ ++ +F+ +  ++ +TW++MVA    
Sbjct: 620  GMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 679

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +   EEAL +F   + +G+  +QF+ S  + A A LA L +G+Q+H ++ K GF S++  
Sbjct: 680  HGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHV 739

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             ++ +DMY KCG + D   +      ++ + WN +IS F+RH    +    F +M + G 
Sbjct: 740  TNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 799

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P+  T++S+LSAC+H G+V++G +Y+D M ++  V P + H  C+ID+LGR+G +  A 
Sbjct: 800  KPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAE 859

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
              I  MP       W SLLA+CR + NLELA   A+ L  ++P +   ++L SN+ A + 
Sbjct: 860  GFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSG 919

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            +WE+V   RK +  + +KK+ + SWV++K        G++ HP+ + I +KL +L++  K
Sbjct: 920  KWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTK 979

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            + GY P+T   LHD+++ +K+  L +HSE+LAL FGL+       +RI KNLR+CGDCHS
Sbjct: 980  EAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHS 1039

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
              KF S I GR+ ++RD  RFHHF+ G CSC
Sbjct: 1040 VYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 215/398 (54%), Gaps = 6/398 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++ +GL+++    N L+  YS+ G    A  VF  M +R ++SWN+++  Y  
Sbjct: 417 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 476

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +G+  + + +   +L+ GK   +  T +S L AC+    + E K +H   + A     + 
Sbjct: 477 DGKCLDGLKILAELLQMGKV-MNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLI 535

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG AL+ +Y K G++ +A +V ++MP+ + VTW++++ G  +NE   EA+  ++  +  G
Sbjct: 536 VGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKG 595

Query: 232 LEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           +  N  T+ SV+ AC+    L++ G  +HA +  TGF S+ +  +SL+ MYAKCG +  +
Sbjct: 596 IPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSS 655

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            ++F G+  K+ + WN M++  + H    E + +F +M+  G++ ++ ++   L+A +++
Sbjct: 656 NYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANL 715

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
            ++E+G+    L++K      ++   +  +D+ G+ G +H+   + L  P + +   W  
Sbjct: 716 AVLEEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKM-LPQPINRSRLSWNI 773

Query: 411 LLASCRNYRNLELAEIAAKQL--FGMEPDNAGNHLLLS 446
           L+++   +   + A     ++   G +PD+     LLS
Sbjct: 774 LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 811



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 199/382 (52%), Gaps = 4/382 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L+ +   L+  +   + + GK  HA  I   +N     +N LIN YSK G I  AR VFD
Sbjct: 94  LNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFD 153

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-AKRDV 151
           EM  R   SW+T++  Y   G  +EAV LF  M   G  P + F V+S++ AC+ +    
Sbjct: 154 EMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP-NGFMVASLITACSRSGYMA 212

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            E  Q+H F +K  +  +V+VGTAL+  Y   GL+ +A ++FE MP+ N V+W+S++ G+
Sbjct: 213 DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGY 272

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             +    E L +++R +  G+  NQ T ++V  +C  L   + G QV   + + GF  ++
Sbjct: 273 SDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSV 332

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             A+SL+ M++    V +A +VF  + E +++ WN MIS ++ H    E +  F  M+  
Sbjct: 333 SVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL 392

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
               N  T  S+LS CS +  ++ G+    L+VK   +  NV   + ++ +   AG   +
Sbjct: 393 HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKL-GLDSNVCICNTLLTLYSEAGRSED 451

Query: 392 AYDLILNMPFDATASMWGSLLA 413
           A +L+     +     W S++A
Sbjct: 452 A-ELVFQAMTERDLISWNSMMA 472



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 161/315 (51%), Gaps = 1/315 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T      SC      V G      II  G  +    +N LI+ +S    +  A  VFD 
Sbjct: 298 NTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDH 357

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +  I+SWN +I +Y  +G  +E++  F + +R      +  T+SS+L  C++  ++  
Sbjct: 358 MNECDIISWNAMISAYAHHGLCRESLRCF-HWMRHLHNETNSTTLSSLLSVCSSVDNLKW 416

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H   +K  +D NV +   LL +Y++ G   DA  VF++M ER+ ++W+SM+A +VQ
Sbjct: 417 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 476

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    + L +      +G   N  T +S + AC+    LI+ K VHA++   GF   +  
Sbjct: 477 DGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIV 536

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV MY K G +++A  V   + + + V WN +I G + +    E +  ++ +++ G+
Sbjct: 537 GNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGI 596

Query: 334 HPNEQTYISVLSACS 348
             N  T +SVL ACS
Sbjct: 597 PANYITMVSVLGACS 611



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 190/365 (52%), Gaps = 7/365 (1%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
            G   H  ++  G+  D      L++FY   GL+  A+K+F+EMP   +VSW +++  Y+
Sbjct: 214 EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 273

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +G   E + ++  M +EG +  ++ T ++V  +C    D     Q+    ++   + +V
Sbjct: 274 DSGNPGEVLNVYQRMRQEGVSG-NQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSV 332

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            V  +L+ +++    + +A  VF+ M E + ++W++M++ +  + L  E+L  F   + L
Sbjct: 333 SVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL 392

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
             E N  T+SS++  C+ +  L  G+ +H ++ K G  SN+   ++L+ +Y++ G   DA
Sbjct: 393 HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDA 452

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  + E++++ WN+M++ + +  + ++ + +  ++ Q G   N  T+ S L+ACS+ 
Sbjct: 453 ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 512

Query: 351 GMVEKGKSYFDLMVKQ--HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             + + K    L++    H+ L      + ++ + G+ G++ EA  ++  MP       W
Sbjct: 513 ECLIESKIVHALIIVAGFHDFL---IVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTW 568

Query: 409 GSLLA 413
            +L+ 
Sbjct: 569 NALIG 573


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 324/559 (57%), Gaps = 46/559 (8%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA ++ +GL+ +    N LI+ Y KCG +  A +V D+MP R +VSWN+++     
Sbjct: 156 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCAR 215

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           NG+  +A+ +                                CK++ +  LK     +  
Sbjct: 216 NGQFDDALEV--------------------------------CKEMELLGLKP----DAG 239

Query: 172 VGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
              +LL       L  +S    +F  +  ++ V+W+ M+A ++ N +  EA+ +F + + 
Sbjct: 240 TMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED 299

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             ++ +  +I+SV+ AC  L+AL+ G+++H  + +     N+   ++L+DMYAKCGC+  
Sbjct: 300 HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEY 359

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF  ++ ++VV W +MIS +  + +  + + LF +MQ  GL+P+   ++SVLSACSH
Sbjct: 360 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 419

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G++++G+ YF LM ++  ++P + H+ CM+D+LGRAG + EAY  I  MP +    +WG
Sbjct: 420 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 479

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL++CR Y N+ +  +AA QLF + P+ +G ++LLSNIYA   RWE+V   R +++   
Sbjct: 480 ALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKG 539

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           +KK    S  E+         G ++HP+  +IY +L+  V +MK+ GY PET+  LHDVE
Sbjct: 540 IKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVE 599

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K+  L  HSEKLA+ F ++   PG PIRI KNLR+CGDCH   K  S+I GRE  +R
Sbjct: 600 EEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIR 659

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF NG CSC D+W
Sbjct: 660 DTNRFHHFYNGVCSCGDYW 678



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 191/389 (49%), Gaps = 39/389 (10%)

Query: 53  KVCHAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           K  H+KI I   L+++      L+  Y+ CG     R +FDE+P++ +V +N +I SY  
Sbjct: 55  KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 114

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    +A+ +F NM   G  P   +T   VL A +   D++   Q+H   ++  +D NVF
Sbjct: 115 NHLYSDALLVFKNMAGHGIDP-DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVF 173

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG  L+ +Y KCG + +A RV + MP R+ V+W+S+VAG  +N  +++AL + +  ++LG
Sbjct: 174 VGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG 233

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L+ +  T++S++ A             +  L    F   MF                   
Sbjct: 234 LKPDAGTMASLLPAVT-----------NTCLDNVSFVKEMFMK----------------- 265

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
                +  K++V WN MI+ +  ++   E + +F +M+   + P+  +  SVL AC  + 
Sbjct: 266 -----LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLS 320

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  G+   + +V++  + PN+   + +ID+  + G +  A ++   M F    S W S+
Sbjct: 321 ALLLGRRIHEYVVRKR-LQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS-WTSM 378

Query: 412 L-ASCRNYRNLELAEIAAK-QLFGMEPDN 438
           + A   N +  +   + ++ Q  G+ PD+
Sbjct: 379 ISAYGMNGKGRDAVSLFSRMQDLGLNPDS 407



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 11/281 (3%)

Query: 150 DVFECKQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           D+   K+LH    +   +  N  +G  L+  YA CG       +F+ +P++N V ++ M+
Sbjct: 50  DIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMI 109

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
             +V N LY +AL++F+     G++ + +T   V+ A +G   L  G Q+HA + + G  
Sbjct: 110 RSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLD 169

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            N+F  + L+ MY KCGC+V+A  V   +  ++VV WN++++G +R+ +  + + + ++M
Sbjct: 170 LNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEM 229

Query: 329 QQAGLHPNEQTYISVLSACSHIGM--VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +  GL P+  T  S+L A ++  +  V   K  F  +  +  V  NV     MI +    
Sbjct: 230 ELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNV-----MIAVYMNN 284

Query: 387 GLIHEAYDLILNM---PFDATASMWGSLLASCRNYRNLELA 424
            +  EA D+ L M     D  A    S+L +C +   L L 
Sbjct: 285 SMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG 325



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 7/180 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           ++ + L +C    A + G+  H  ++   L  + L  N LI+ Y+KCG +  AR+VFD+M
Sbjct: 308 SIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQM 367

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSW ++I +Y  NG+ ++AV+LF  M   G  P S     SVL AC+    + E 
Sbjct: 368 KFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDS-IAFVSVLSACSHAGLLDEG 426

Query: 155 K---QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           +   +L     K       FV   ++D+  + G + +A    + MP E NE  W ++++ 
Sbjct: 427 RYYFKLMTEECKIVPRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 484


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 339/601 (56%), Gaps = 42/601 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T     +SCA+ +A   GK  HA+I+  GL  D      LI+ Y++ G++  A KVFD  
Sbjct: 80  TFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTS 139

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        E+P + +VSWN +I  Y   GR +EA+ LF 
Sbjct: 140 SHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFN 199

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+++VL  C    +V   +Q+H +        N+ +  AL+D+Y+KC
Sbjct: 200 EMMKMDVKP-DESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKC 258

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +FE +  ++ ++W++++ G+     ++EAL++F+    LG   N  T+ S++
Sbjct: 259 GEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSIL 318

Query: 244 CACAGLAALIQGKQVHAVLCKT--GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +N    +SL+DMYAKCG +  A  VF  I  K+
Sbjct: 319 PACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKS 378

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +   N MI GF+ H R+     L  +M++ G+ P++ T++ +LSACSH G+ + G+  F 
Sbjct: 379 LSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFK 438

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M   + + P + HY CMID+LGR+GL  EA +LI +M  +    +WGSLL +C+ ++NL
Sbjct: 439 SMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNL 498

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E+ A++L  +EP N G+++LLSNIYA + RW++VAR R L+ D  +KK    S +EI
Sbjct: 499 ELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEI 558

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HP+  EIY  LE++   + + G+  +T   L ++E+  K+  L +HS
Sbjct: 559 DSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHS 618

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  +RI+KNLR+C +CH   K  S+I  RE I RD +RFHHF +G 
Sbjct: 619 EKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGM 678

Query: 594 C 594
           C
Sbjct: 679 C 679



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 214/419 (51%), Gaps = 45/419 (10%)

Query: 60  IGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
           I +GL+N     + L++F        G   A  VF  + +   +SWNT+I  +  +    
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
            A+ L++ M+  G +P S +T   +  +CA  +   E KQ+H   LK  +  ++ V T+L
Sbjct: 61  SALNLYVYMISLGLSPNS-YTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSL 119

Query: 177 LDVYAKCGLISDASRVFES-------------------------------MPERNEVTWS 205
           + +YA+ G++ DA +VF++                               +P ++ V+W+
Sbjct: 120 ISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWN 179

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +M++G+ +   Y+EAL LF     + ++ ++ T+++V+  C     +  G+Q+H+ +   
Sbjct: 180 AMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNH 239

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           GFGSN+   ++L+D+Y+KCG +  A+ +F G++ K+V+ WNT+I G++      E +++F
Sbjct: 240 GFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVF 299

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVFHYSCMIDI 382
           ++M + G  PN+ T +S+L AC+H+G ++ G+    Y D  +K   ++ N    + +ID+
Sbjct: 300 QEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK--GIITNTSLQTSLIDM 357

Query: 383 LGRAGLIHEA---YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
             + G I  A   +D ILN    +  +M        R     +L     K   G+EPD+
Sbjct: 358 YAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKD--GIEPDD 414


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/551 (38%), Positives = 321/551 (58%), Gaps = 18/551 (3%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K+  M    D + S  +I    + G +  AR++FDEM +R +++W T+I  Y  N R   
Sbjct: 162 KLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDV 221

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           A  LF  M  + +  ++   +   L       + F      V  +K  +  N     A++
Sbjct: 222 ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEF----FEVMPMKPVIACN-----AMI 272

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
               + G I  A RVF+ M +R+  TW  M+  + +     EAL LF + Q  G+  +  
Sbjct: 273 VALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFP 332

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           ++ S++  CA LA+L  G+QVHA L +  F  +++ AS L+ MY KCG +V A  VF   
Sbjct: 333 SLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRF 392

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             K++++WN++ISG++ H    E + +F +M  +G  PN+ T I++L+ACS+ G +E+G 
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGL 452

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417
             F+ M  +  V P V HYSC +D+LGRAG + +A +LI +M     A++WG+LL +C+ 
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKT 512

Query: 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477
           +  L+LAE+AAK+LF +EP+NAG ++LLS+I A+  +W +VA  RK +R   V K    S
Sbjct: 513 HSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCS 572

Query: 478 WVEI---------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
           W+E+          G RNHP  A I   LEK    +++ GY P+  H LHDV++  K + 
Sbjct: 573 WIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDS 632

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHH 588
           L  HSE+LA+ +GL+ L  GVPIR+MKNLR+CGDCH+ +K  S++  RE I+RD NRFHH
Sbjct: 633 LSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHH 692

Query: 589 FTNGSCSCWDF 599
           F NG CSC D+
Sbjct: 693 FNNGECSCRDY 703



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 166/377 (44%), Gaps = 67/377 (17%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G+NN    S +     S+ G I+ ARK FD +  + I SWN+I+  Y  NG  +EA  +F
Sbjct: 17  GVNNSFEISRL-----SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMF 71

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             M                                         +RN+     L+  Y K
Sbjct: 72  DEM----------------------------------------PERNIVSWNGLVSGYIK 91

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
             +I +A  VFE MPERN V+W++MV G+VQ  +  EA +LF R      E N+ + + +
Sbjct: 92  NRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMP----ERNEVSWTVM 147

Query: 243 ICACAGLAALIQGKQVHAV--LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
                    LI G ++     L     G ++ A+++++    + G V +A  +F  + E+
Sbjct: 148 ------FGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRER 201

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           NV+ W TMI+G+ ++ R      LFE M +      E ++ S+L   +  G +E  + +F
Sbjct: 202 NVITWTTMITGYGQNKRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFF 257

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
           ++M      +  V   + MI  LG  G I +A  +   M     A+  G + A  R    
Sbjct: 258 EVM-----PMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFE 312

Query: 421 LELAEIAAK-QLFGMEP 436
           LE  E+ A+ Q  G+ P
Sbjct: 313 LEALELFAQMQRQGVRP 329



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 3/179 (1%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
             +L + L  CA   +   G+  HA ++    + D   +++L+  Y KCG +  A+ VFD
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFD 390

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
             P + I+ WN+II  Y ++G  +EA+ +F  M   G  P ++ T+ ++L AC+    + 
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMP-NKVTLIAILTACSYGGKLE 449

Query: 153 ECKQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVA 209
           E  ++      K  +   V   +  +D+  + G +  A  +  SM  + + T W +++ 
Sbjct: 450 EGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLG 508


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/604 (35%), Positives = 343/604 (56%), Gaps = 45/604 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ CAR ++       H++II  G +  +L SN L++ Y KCGLI  A ++FDEMP R  
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW +I+ ++      +  +++   M          F  + ++ AC++   +   KQ+H 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 160 -FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            F L    D  V V ++L+D+Y KCG   +A  VF+S+  +N V+W+SM++G+ ++    
Sbjct: 130 RFMLSXFCDDEV-VKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKC 188

Query: 219 EALILFRRAQVLGL---------------------EYNQ-----------FTISSVICAC 246
           EA+ LF +A V  L                      +N+             +SSV+  C
Sbjct: 189 EAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGC 248

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A LA L  GKQ+H ++   GF S +F +++LVDMYAKC  ++ A  +F  +  K+V+ W 
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I G ++H ++ E + L+++M  + + PNE T++ +L ACSH G+V +G+  F  M   
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           +++ P++ HY+C++D+L R+G + EA +L+  +PF      W SLL++C  + NLE+   
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR- 485
            A ++  ++P++   ++LLSN+YA    W  V++ RKL+   EV+KE   S ++  GK  
Sbjct: 429 IADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDF-GKDS 487

Query: 486 ---------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                    +HP   EI + L+ L  EM+K GY P T   L+D+E   K++ L  HSE+L
Sbjct: 488 QVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERL 547

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A+ +GL+   PG  IRI+KNLRICGDCH+ +KF S I  RE +VRD  R+HHF  G CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 597 WDFW 600
            DFW
Sbjct: 608 NDFW 611



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + +  CA       GK  H  +I +G  +    SN L++ Y+KC  I  A+ +F  M
Sbjct: 240 VLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRM 299

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P++ ++SW +II     +G+ +EA+ L+  M+     P +E T   +L AC+    V   
Sbjct: 300 PRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKP-NEVTFVGLLYACSHAGLVSRG 358

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           ++L        +++ ++   T LLD+ ++ G + +A  + + +P + +E TW+S+++ 
Sbjct: 359 RELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSA 416


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 332/578 (57%), Gaps = 24/578 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   ++ CAR      GK  H   + +G  +D      L+N YSKCG I  ARKVFD M
Sbjct: 114 TLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGM 173

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDV 151
             + +V WN++I  Y   G    A+ LF  M    +  +S   +   L  C    + R +
Sbjct: 174 IDKDVVLWNSLIDGYARCGEIDIALQLFEEMPE--RDAFSWTVLVDGLSKCGKVESARKL 231

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
           F+  Q+          RN+    A+++ Y K G    A  +F  MP  + VTW+ M+AG+
Sbjct: 232 FD--QMPC--------RNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGY 281

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             N  + +A+ +F     LG   +  T+ SV+ A +GLA L +G+ +H+ + K GF  + 
Sbjct: 282 ELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDG 341

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              +SL++MYAKCGC+  A  VF  I++K V  W  +I G   H  +   + LF +M + 
Sbjct: 342 ILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKT 401

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL PN   +I VL+AC+H G+V+ G+ YFD+M+ ++ + P + HY C++DIL RAG + E
Sbjct: 402 GLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEE 461

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A + I NMP      +W SLL   RN+  +++ E AA+++  + P+  G ++LLSN+YAA
Sbjct: 462 AKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAA 521

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEE 503
           +  WE+V+  R+++     +K+   S VE        I G  +HP+  EIY+K+ ++ E+
Sbjct: 522 SGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEK 581

Query: 504 MKKLGYKPETEHDLHDVEDSRKQEL-LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           +K +G+ P+T   L  +E  +++E  L +HSE+LA+ FGL+ + PG+PIRIMKNLR+C D
Sbjct: 582 LKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCND 641

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CHS  K  S+I  RE IVRD  RFHHF NGSCSC D+W
Sbjct: 642 CHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 140/253 (55%), Gaps = 16/253 (6%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDASRVFESMPERNEVTWSSMVAG 210
           E +QLH F+LK A+  + FV + LL +Y+  K   +  A  +F+ +  R+ + W++++  
Sbjct: 28  EVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKC 87

Query: 211 FVQNELYEEALILFRRAQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           +V+N+   + ++LF     L  EY  + FT+  VI  CA L  + +GKQ+H +  K GFG
Sbjct: 88  YVENQFSHDGIVLFHE---LVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           S++F   SLV+MY+KCG +  A  VF G+ +K+VVLWN++I G++R       + LFE+M
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
            +     +  ++  ++   S  G VE  +  FD M  +     N+  ++ MI+   ++G 
Sbjct: 205 PER----DAFSWTVLVDGLSKCGKVESARKLFDQMPCR-----NLVSWNAMINGYMKSGD 255

Query: 389 IHEAYDLILNMPF 401
              A +L   MP 
Sbjct: 256 FDSALELFYQMPI 268



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 174/348 (50%), Gaps = 15/348 (4%)

Query: 48  APVRGKVCHAKIIGMGLNNDTLTSNILINFYS--KCGLISGARKVFDEMPQRCIVSWNTI 105
           AP   +  HA  +   + N    S+ L+  YS  K   +  AR +FD + +R ++ WNTI
Sbjct: 25  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA 165
           I  Y  N    + + LF  ++ E   P   FT+  V+  CA    V E KQ+H  ALK  
Sbjct: 85  IKCYVENQFSHDGIVLFHELVHE-YLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIG 142

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
              +VFV  +L+++Y+KCG I  A +VF+ M +++ V W+S++ G+ +    + AL LF 
Sbjct: 143 FGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFE 202

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL-CKTGFGSNMFAASSLVDMYAKC 284
                  E + F+ + ++   +    +   +++   + C+     N+ + +++++ Y K 
Sbjct: 203 EMP----ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCR-----NLVSWNAMINGYMKS 253

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           G    A  +F  +   ++V WN MI+G+  + + ++ + +F  M + G  P+  T +SVL
Sbjct: 254 GDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 313

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           SA S + ++ KG+     M K    L  +   S +I++  + G I  A
Sbjct: 314 SAVSGLAVLGKGRWIHSYMEKNGFELDGILGTS-LIEMYAKCGCIESA 360



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + L + +      +G+  H+ +   G   D +    LI  Y+KCG I  A  VF  
Sbjct: 307 ATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRA 366

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +  W  II     +G    A+ALF+ M + G  P +   +  VL AC     V +
Sbjct: 367 IQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFI-GVLNACNHAGLVDD 425

Query: 154 CKQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
            +Q     ++ + ++  ++        L+D+  + G + +A    E+MP   N+V W S+
Sbjct: 426 GRQYFDMMMNEYKIEPTLEHY----GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSL 481

Query: 208 VAG 210
           + G
Sbjct: 482 LGG 484


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/591 (35%), Positives = 346/591 (58%), Gaps = 9/591 (1%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF 77
           S A+A   A   +     L   L + A  R+   G+ CH   +  GL       N +++ 
Sbjct: 93  SDALALLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHM 152

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y +C  +  A KVF+ +    I ++N++I  +   G    ++ +  +M+ E +  +   +
Sbjct: 153 YCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQ-WDHVS 211

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
             +VL  CA+ +++    Q+H  ALK  +++NV+VG+AL+D+Y KC    DA   FE +P
Sbjct: 212 YVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLP 271

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           E+N V+W++++  + QNE +E+AL LF   ++ G+  N+FT +  + +CAGLAAL  G  
Sbjct: 272 EKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNA 331

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           + A   KTG    +   ++L++MY+K G + DA+ VF  +  ++VV WN++I G++ H  
Sbjct: 332 LSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGL 391

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           + E M +F  M  A + P+  T++ VL AC+ +G+V++G  Y ++M+K+  + P   HY+
Sbjct: 392 AREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYT 451

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
           CM+ +L RAG + EA   IL+         W SLL+SC+ Y+N  L    A+Q+  ++P+
Sbjct: 452 CMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPN 511

Query: 438 NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPR 489
           + G ++LLSN+YA   RW+ V + RKL+R+  V+KE   SW+++  +        +NH  
Sbjct: 512 DVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKW 571

Query: 490 IAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV 549
           I +I  KL++L+ ++K +GY P     LHDVE  +K+E L++HSEK+AL FGL+    G 
Sbjct: 572 INQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGE 631

Query: 550 PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            IRIMKNLRIC DCH  +K  S +  R+ +VRD  RFH   +G CSC D+W
Sbjct: 632 TIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 197/362 (54%), Gaps = 9/362 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA++I    + D +  N LI FY KCG +  AR++FD MP R  VS N ++  Y +
Sbjct: 30  GKAIHAQMI-RAAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYAS 88

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            GR  +A+AL    L+      +E+ +S+ L A A  R     +Q H +A+K+ +  + +
Sbjct: 89  AGRHSDALAL----LKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPY 144

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  A+L +Y +C  + DA +VFE++   +   ++SM+ GF+    ++ ++ + R      
Sbjct: 145 VCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEV 204

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
            +++  +  +V+  CA    L+ G QVHA   K     N++  S+LVDMY KC C  DA+
Sbjct: 205 EQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAH 264

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F  + EKNVV W  +++ ++++ R  + + LF  ++  G+ PNE TY   L++C+ + 
Sbjct: 265 SAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLA 324

Query: 352 MVEKGKSY-FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
            ++ G +     M   H    +V   + ++++  ++G IH+A+ + L+MP+    S W S
Sbjct: 325 ALKNGNALSASAMKTGHWGALSVC--NALMNMYSKSGSIHDAWRVFLSMPWRDVVS-WNS 381

Query: 411 LL 412
           ++
Sbjct: 382 VI 383


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 343/608 (56%), Gaps = 51/608 (8%)

Query: 40   LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            L++C R      G   H  +I  G + D      L+NFY +C  +  A +VF EMP    
Sbjct: 530  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA 589

Query: 100  VSWNTIIGSYTTNGREQEAVALFINM---LREGKTPYSEFTVSSVLCACAAKRDVFEC-K 155
            + WN  I     + + Q+ V LF  M     + +T     T+  VL A  ++       K
Sbjct: 590  LLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA----TIVRVLQASISELGFLNMGK 645

Query: 156  QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
            + H + L+   D +V+VGT+L+D+Y K   ++ A  VF++M  RN   W+S+V+G+    
Sbjct: 646  ETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKG 705

Query: 216  LYE-----------------------------------EALILFRRAQVLGLEYNQFTIS 240
            ++E                                   EAL  F + Q  G+  N  +I+
Sbjct: 706  MFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASIT 765

Query: 241  SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
             ++ ACA L+ L +GK++H +  + GF  ++F A++L+DMY+K   + +A+ VF  I+ K
Sbjct: 766  CLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNK 825

Query: 301  NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
             +  WN MI GF+      E + +F +MQ+ G+ P+  T+ ++LSAC + G++ +G  YF
Sbjct: 826  TLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYF 885

Query: 361  DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
            D M+  + ++P + HY CM+D+LGRAG + EA+DLI  MP    A++WG+LL SCR ++N
Sbjct: 886  DSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKN 945

Query: 421  LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
            L+ AE AAK LF +EP+N+ N++L+ N+Y+   RWE++   R+L+  + V+  +  SW++
Sbjct: 946  LKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQ 1005

Query: 481  IKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
            I  +        + HP   +IY +L +LV EMKKLGY P+      ++++  KQ++L+ H
Sbjct: 1006 INQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSH 1065

Query: 533  SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
            +EKLA+T+GL+ +  G PIR++KN RIC DCHS  K+ S +  RE  +RD  RFHHF  G
Sbjct: 1066 TEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREG 1125

Query: 593  SCSCWDFW 600
             CSC DFW
Sbjct: 1126 KCSCNDFW 1133



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 165/346 (47%), Gaps = 5/346 (1%)

Query: 53  KVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K+ HA++I +    N D    N++ ++       S A   +  +P R  + WN+ +  + 
Sbjct: 440 KMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEEFK 498

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           ++      V      L      +     S  L  C    D++   ++H   +K   D +V
Sbjct: 499 SSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV 558

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           ++  AL++ Y +C  +  A++VF  MP    + W+  +   +Q+E  ++ + LFR+ Q  
Sbjct: 559 YLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFS 618

Query: 231 GLEYNQFTISSVICAC-AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            L+    TI  V+ A  + L  L  GK+ H  + + GF  +++  +SL+DMY K   +  
Sbjct: 619 FLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTS 678

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF  ++ +N+  WN+++SG+S      + + L  +M++ G+ P+  T+  ++S  + 
Sbjct: 679 AQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAM 738

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            G  ++  ++F  M +Q  V+PN    +C++       L+ +  ++
Sbjct: 739 WGCGKEALAFFAQM-QQEGVMPNSASITCLLRACASLSLLQKGKEI 783



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 146/316 (46%), Gaps = 39/316 (12%)

Query: 32  ELSTLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           E +T+   LQ+   E   +  GK  H  ++  G + D      LI+ Y K   ++ A+ V
Sbjct: 623 ETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 682

Query: 91  FDEMPQRCIVSWNTIIGSYTTNG-------------RE---------------------- 115
           FD M  R I +WN+++  Y+  G             +E                      
Sbjct: 683 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 742

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+A F  M +EG  P S  +++ +L ACA+   + + K++H  +++     +VFV TA
Sbjct: 743 KEALAFFAQMQQEGVMPNSA-SITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATA 801

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D+Y+K   + +A +VF  +  +   +W+ M+ GF    L +EA+ +F   Q +G+  +
Sbjct: 802 LIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPD 861

Query: 236 QFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
             T ++++ AC     + +G K   +++        +     +VD+  + G + +A+ + 
Sbjct: 862 AITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLI 921

Query: 295 SGIEEK-NVVLWNTMI 309
             +  K +  +W  ++
Sbjct: 922 HTMPLKPDATIWGALL 937



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +++   L++CA      +GK  H   I  G   D   +  LI+ YSK   +  A KVF  
Sbjct: 762 ASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRR 821

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  + + SWN +I  +   G  +EA+++F  M + G  P    T +++L AC     + E
Sbjct: 822 IQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGP-DAITFTALLSACKNSGLIGE 880

Query: 154 -CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVA 209
             K          +   +     ++D+  + G + +A  +  +MP + + T W +++ 
Sbjct: 881 GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLG 938


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 336/607 (55%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----------------------------- 65
           T    L+SCA+  A   G+  H +++  G +                             
Sbjct: 105 TFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKS 164

Query: 66  --NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
              D ++   LI  Y+  G I  A K+FDE+P + +VSWN  I  Y   G  +EA+ LF 
Sbjct: 165 SHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFK 224

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ +VL ACA    +   +Q+H +        N+ +  AL+D+Y+KC
Sbjct: 225 KMMKTNVRP-DESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKC 283

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +F+ +  ++ ++W++++ G+    LY+EAL+LF+     G + N  T+ S++
Sbjct: 284 GELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSIL 343

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A  VF  +  ++
Sbjct: 344 SACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRS 403

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     +F +M++ G+ P++ T++ +LSACSH GM++ G+  F 
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR 463

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + ++P + HY CMID+ G +GL  EA  +I  M  +    +W SLL +C+ + N+
Sbjct: 464 SMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNV 523

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E  A+ L  +EP+N G+++LLSNIYA   RW EVA+ R L+ D  +KK    S +EI
Sbjct: 524 ELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEI 583

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HHS
Sbjct: 584 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 643

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 644 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGE 703

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 704 CSCNDYW 710



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 215/426 (50%), Gaps = 45/426 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGL------ISGARKVFDEMPQRCIVSWNTII 106
           ++ HA++I  GL+N   T+  L      C L      +  A  VFD + +  ++ WNT+ 
Sbjct: 19  RIIHAQMIKTGLHN---TNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMF 75

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
             +  +     A+ L++ M+  G  P S +T   +L +CA      E +QLH   LK   
Sbjct: 76  RGHALSSDPVSALKLYVCMVSLGLLPNS-YTFPFLLKSCAKSXAFKEGQQLHGQVLKFGF 134

Query: 167 DRNVFVGTALLDVYAKCGLISDASRV-------------------------------FES 195
           D ++++ T+L+ +Y + G + DA +V                               F+ 
Sbjct: 135 DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDE 194

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           +P ++ V+W++ ++G+ +   Y+EAL LF++     +  ++ T+ +V+ ACA   ++  G
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG 254

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +QVH+ +   GFG N+   ++L+D+Y+KCG +  A  +F G+  K+V+ WNT+I G++  
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               E ++LF+ M ++G  PN+ T +S+LSAC+H+G ++ G+     + K+   + N   
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374

Query: 376 Y-SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL--ASCRNYRNLELAEIAAKQLF 432
             + +ID+  + G I EA   + +   + + S W +++   +     N      +  +  
Sbjct: 375 LRTSLIDMYAKCGDI-EAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN 433

Query: 433 GMEPDN 438
           G+EPD+
Sbjct: 434 GIEPDD 439



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 24/150 (16%)

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF-------- 292
           S++  C  L +L   + +HA + KTG  +  +A S L++      CV+  +F        
Sbjct: 7   SLLHXCKTLQSL---RIIHAQMIKTGLHNTNYALSKLLEX-----CVLSPHFDGLPYAIS 58

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  I+E  +++WNTM  G +  +  V  + L+  M   GL PN  T+  +L +C+    
Sbjct: 59  VFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXA 118

Query: 353 VEKGKSY--------FDLMVKQHNVLPNVF 374
            ++G+          FDL +  H  L +++
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMY 148


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 339/607 (55%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------------ 82
           T    L+SCA+ +    G+  H  ++ +G   D      LI+ Y K G            
Sbjct: 105 TFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGS 164

Query: 83  ----------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                     LI+G         A+K+FDE+P + +VSWN II  Y   G  +EA+ LF 
Sbjct: 165 SHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFK 224

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ +V+ ACA    +   +Q+H +     +  N+ +  AL+D+Y+KC
Sbjct: 225 EMMKTNVKP-DESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKC 283

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +F+ +  ++ ++W++M+ G+    LY+EAL+LF+     G   N  T+ S++
Sbjct: 284 GEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSIL 343

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A+ VF+ +  + 
Sbjct: 344 PACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRT 403

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +   N MI GF+ H R+     +F +M++ G+ P++ T++ +LSACSH GM++ G+  F 
Sbjct: 404 LSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFR 463

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + + P + HY CMID+LG  GL  EA ++I  M  +    +W SLL +C+ + N+
Sbjct: 464 SMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNV 523

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E  A++L  +EP+N G+++LLSNIYA   RW EVA  R L+ D  +KK    S +EI
Sbjct: 524 ELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEI 583

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   +++ G+ P+T   L ++E+  KQ  L HHS
Sbjct: 584 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHS 643

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 644 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 703

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 704 CSCNDYW 710



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 197/384 (51%), Gaps = 40/384 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSY 109
           ++ HA++I  GL+N     + L+ F        G   A  VF+ + +  ++ WNT+   +
Sbjct: 19  RIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +     A+ L++ M+  G  P S +T   +L +CA  +   E +Q+H   LK   + +
Sbjct: 79  ALSSDPVSAIKLYVCMISLGLLPNS-YTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELD 137

Query: 170 VFVGTALLDVYAKCGLISDASRVFES-------------------------------MPE 198
           ++V T+L+ +Y K G   DA +VF+                                +P 
Sbjct: 138 LYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPV 197

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           ++ V+W+++++G+      +EAL LF+      ++ ++ T+ +V+ ACA   ++  G+QV
Sbjct: 198 KDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQV 257

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H+ +   G GSN+   ++L+D+Y+KCG V  A  +F G+  K+V+ WNTMI G++     
Sbjct: 258 HSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLY 317

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVFH 375
            E ++LF++M ++G +PN+ T +S+L AC+ +G ++ G+    Y D  +K   V      
Sbjct: 318 KEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIK--GVTNASSL 375

Query: 376 YSCMIDILGRAGLIHEAYDLILNM 399
            + +ID+  + G I  A+ +  +M
Sbjct: 376 RTSLIDMYAKCGDIEAAHQVFNSM 399


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/574 (37%), Positives = 336/574 (58%), Gaps = 18/574 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKII----------GMGLNNDTLTSNILINFYSKCGL 83
           STL A L   A++ A  +G   HA  I             L +  L    L++ Y+KCG 
Sbjct: 114 STLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 173

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +  AR+VFD MP R  V+W+ +IG +    R  +A  LF  ML +G    S  +++S L 
Sbjct: 174 LLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALR 233

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           ACA+   +   +QLH    K+ +  ++  G +LL +YAK GLI  A  +F+ M  ++ V+
Sbjct: 234 ACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           +S++V+G+VQN   EEA ++F++ Q   +E +  T+ S+I AC+ LAAL  G+  H  + 
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI 353

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
             G  S     ++L+DMYAKCG +  +  VF+ +  +++V WNTMI+G+  H    E   
Sbjct: 354 IRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LF +M   G  P+  T+I +LSACSH G+V +GK +F +M   + + P + HY CM+D+L
Sbjct: 414 LFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 473

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + EAY+ I +MP  A   +W +LL +CR Y+N++L +  ++ +  + P+  GN +
Sbjct: 474 SRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLSNIY+A  R++E A  R + +    KK    SW+EI G         ++HP+  EIY 
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYR 593

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
           +L+ ++  +KKLGY+P+T   L D+E+  K++ LI HSEKLA+ +G++ L     I + K
Sbjct: 594 ELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTK 653

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHF 589
           NLR+CGDCH+ +K  S +  R  IVRD NRFHHF
Sbjct: 654 NLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 162/329 (49%), Gaps = 16/329 (4%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           MLR    P + +T    L AC+A  D    + +H  A+ A +  ++FV TALLD+Y KC 
Sbjct: 1   MLRHRVAP-NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCA 59

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL--ILFRRAQVLGLEYNQFTISSV 242
            + DA+ +F +MP R+ V W++M+AG+  + +Y  A+  +L  + Q+  L  N  T+ ++
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSN----------MFAASSLVDMYAKCGCVVDAYF 292
           +   A   AL QG  VHA   +     N          +   ++L+DMYAKCG ++ A  
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI-SVLSACSHIG 351
           VF  +  +N V W+ +I GF   +R  +  +LF+ M   GL     T I S L AC+ + 
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLD 239

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  G+    L+ K   V  ++   + ++ +  +AGLI +A  L   M    T S    +
Sbjct: 240 HLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 412 LASCRNYRNLELAEIAAK-QLFGMEPDNA 439
               +N R  E   +  K Q   +EPD A
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAA 327



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           + +T+ + + +C+   A   G+  H  +I  GL ++T   N LI+ Y+KCG I  +R+VF
Sbjct: 325 DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF 384

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + MP R IVSWNT+I  Y  +G  +EA ALF+ M   G  P    T   +L AC+    V
Sbjct: 385 NMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP-DGVTFICLLSACSHSGLV 443

Query: 152 FECKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWS 205
            E K       H + L   M+  +     ++D+ ++ G + +A    +SMP R +V  W 
Sbjct: 444 IEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWV 499

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLE-YNQFTISSVICACAG 248
           +++      +  +    + R  Q LG E    F + S I + AG
Sbjct: 500 ALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 543


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/547 (37%), Positives = 332/547 (60%), Gaps = 12/547 (2%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           ++ D    N +I+ Y   G +  A ++F +MP R ++SW+++I     NG+ ++A+ LF 
Sbjct: 177 MDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFR 236

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECK-QLHVFALKAA-MDRNVFVGTALLDVYA 181
           +M+  G    S   V  +  + AAK   +    Q+H    K      + FV  +L+  YA
Sbjct: 237 DMVASGVCLSSGVLVCGL--SAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYA 294

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
            C  +  A RVF  +  ++ V W++++ G+  N+ + EAL +F     + +  N+ + +S
Sbjct: 295 GCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTS 354

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            + +C GL  + +GK +HA   K G  S  +   SLV MY+KCG V DA +VF GI EKN
Sbjct: 355 ALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKN 414

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV WN++I G ++H   +  + LF +M + G+ P+  T   +LSACSH GM++K + +F 
Sbjct: 415 VVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFR 474

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
              ++ +V   + HY+ M+D+LGR G + EA  ++++MP  A + +W +LL++CR + NL
Sbjct: 475 YFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNL 534

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           +LA+ AA Q+F +EPD +  ++LLSN+YA++ RW EVA  R+ ++ + V K+   SW+ +
Sbjct: 535 DLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTL 594

Query: 482 KGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           KG+        R+HP   +IY KLE L  ++K+LGY P+ +  LHDVE  +K+E+L +HS
Sbjct: 595 KGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSYHS 654

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           E+LA+ FGL+    G  I +MKNLR+CGDCH+ +K  ++I  RE +VRD +RFH F NG 
Sbjct: 655 ERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHDFKNGI 714

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 715 CSCGDYW 721



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 173/383 (45%), Gaps = 43/383 (11%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I     CG I  ARK+FDEMP+R +VSW T++      G  QEA  LF  M 
Sbjct: 116 DVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAM- 174

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                                                  MDR+V    A++  Y   G +
Sbjct: 175 -------------------------------------EPMDRDVAAWNAMIHGYCSNGRV 197

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            DA ++F  MP R+ ++WSSM+AG   N   E+AL+LFR     G+  +   +   + A 
Sbjct: 198 DDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAA 257

Query: 247 AGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           A + A   G Q+H  + K G +  + F ++SLV  YA C  +  A  VF  +  K+VV+W
Sbjct: 258 AKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIW 317

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             +++G+  + +  E + +F +M +  + PNE ++ S L++C  +  +E+GK      VK
Sbjct: 318 TALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVK 377

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
              +    +    ++ +  + G + +A  +   +      S W S++  C  +     A 
Sbjct: 378 M-GLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVS-WNSVIVGCAQHGCGMWAL 435

Query: 426 IAAKQLF--GMEPDNAGNHLLLS 446
               Q+   G++PD      LLS
Sbjct: 436 ALFNQMLREGVDPDGITVTGLLS 458



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 3/178 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S+  + L SC       RGKV HA  + MGL +       L+  YSKCG +S A  VF  
Sbjct: 350 SSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKG 409

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +VSWN++I     +G    A+ALF  MLREG  P    TV+ +L AC+    + +
Sbjct: 410 INEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDP-DGITVTGLLSACSHSGMLQK 468

Query: 154 CK-QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVA 209
            +     F  K ++   +   T+++DV  +CG + +A  V  SMP + N + W ++++
Sbjct: 469 ARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLS 526



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + +A  +F+ +P  +   ++ M+  + QN    EA+ LFRR        +  + +S+I  
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPF----KDVVSWNSIIKG 126

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVV 303
           C     ++  +++   + +      + + ++LVD   + G V +A  +F  +E  +++V 
Sbjct: 127 CLHCGDIVTARKLFDEMPR----RTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVA 182

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN MI G+  + R  + + LF +M    +     ++ S+++   H G  E+    F  M
Sbjct: 183 AWNAMIHGYCSNGRVDDALQLFCQMPSRDV----ISWSSMIAGLDHNGKSEQALVLFRDM 238

Query: 364 V 364
           V
Sbjct: 239 V 239


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/632 (36%), Positives = 340/632 (53%), Gaps = 49/632 (7%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           ++ ++S   S  +N     +S+L + L  C       + K  H  ++  GL+        
Sbjct: 30  RTSNNSGTFSEISNQKELLVSSLISKLDDCINLN---QIKQIHGHVLRKGLDQSCYILTK 86

Query: 74  LINFYSKCGLISG--ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           LI   +K G+     AR+V + +  R    W  +I  Y   G+  EA+A++  M +E  T
Sbjct: 87  LIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT 146

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P S FT S++L AC   +D+   +Q H    +      V+VG  ++D+Y KC  I  A +
Sbjct: 147 PVS-FTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARK 205

Query: 192 VFESMPER-------------------------------NEVTWSSMVAGFVQNELYEEA 220
           VF+ MPER                               + V W++MV GF QN   +EA
Sbjct: 206 VFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEA 265

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLV 278
           L  F R +  G+  ++ T++  I ACA L A     +   +  K+G+    ++   S+L+
Sbjct: 266 LEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALI 325

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNE 337
           DMY+KCG V +A  VF  +  KNV  +++MI G + H R+ E + LF  M  Q  + PN 
Sbjct: 326 DMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNT 385

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++  L ACSH G+V++G+  FD M +   V P   HY+CM+D+LGR G + EA +LI 
Sbjct: 386 VTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIK 445

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            M  +    +WG+LL +CR + N E+AEIAA+ LF +EPD  GN++LLSN+YA+   W  
Sbjct: 446 TMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGG 505

Query: 458 VARARKLIRDSEVKKEKSKSWVEIK---------GKRNHPRIAEIYSKLEKLVEEMKKLG 508
           V R RKLI++  +KK  + SWV  K         G  NHP   +I  KLE+LVE +  LG
Sbjct: 506 VLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLG 565

Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
           Y+P+     +DV D+ K+ +LI H+EKLAL F L+       I IMKNLR+C DCH FM+
Sbjct: 566 YQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMR 625

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            AS + G+  I+RD  RFHHF +G CSC DFW
Sbjct: 626 LASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 338/603 (56%), Gaps = 42/603 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----------------------------- 65
           T    L++CA+ +A   G+  H  ++ +G +                             
Sbjct: 105 TFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQS 164

Query: 66  --NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
              D ++   LI  Y+  G I  A+K+FDE+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 165 SHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFK 224

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ +VL ACA    +   +Q+H +        N+ +  AL+D+Y KC
Sbjct: 225 EMMKTNVKP-DESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC 283

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  AS +FE +  ++ ++W++++ G+    LY+EAL+LF+     G   N+ T+ S++
Sbjct: 284 GEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSIL 343

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A  VF  +  ++
Sbjct: 344 PACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRS 403

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     +F +M++ G+ P++ T++ +LSACSH GM++ G+  F 
Sbjct: 404 LSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFR 463

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + + P + HY CMID+LG +GL  EA ++I +M  D    +W SLL +C+ + N+
Sbjct: 464 SMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNV 523

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E  A+ L  +EP N+G+++LLSNIYA   RW EVA+ R L+ D  +KK    S +EI
Sbjct: 524 ELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEI 583

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HHS
Sbjct: 584 DSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 643

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 644 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGV 703

Query: 594 CSC 596
           CSC
Sbjct: 704 CSC 706



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 218/425 (51%), Gaps = 43/425 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSY 109
           ++ HAK+I  GL+N     + LI F        G   A  VFD + +  ++ WNT+   +
Sbjct: 19  RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGH 78

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +     A+ L++ M+  G  P S +T   +L ACA  +   E +Q+H   LK   D +
Sbjct: 79  ALSSDPVSALYLYVCMISLGLVPNS-YTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLD 137

Query: 170 VFVGTALLDVYAKCGLISDASRVFES-------------------------------MPE 198
           ++V T+L+ +Y K G   DA +VF+                                +P 
Sbjct: 138 LYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPV 197

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           ++ V+W+++++G+ +   Y+EAL LF+      ++ ++ T+ +V+ ACA  A++  G+QV
Sbjct: 198 KDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQV 257

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H+ +   GFGSN+   ++L+D+Y KCG V  A  +F G+  K+V+ WNT+I G++     
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLMVKQHNVLPNVFH 375
            E ++LF++M ++G  PNE T +S+L AC+H+G ++ G+    Y D  +K  +  P+   
Sbjct: 318 KEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSN-PSSLR 376

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL--ASCRNYRNLELAEIAAKQLFG 433
            S +ID+  + G I EA   + +   + + S W +++   +     N      +  +  G
Sbjct: 377 TS-LIDMYAKCGDI-EAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDG 434

Query: 434 MEPDN 438
           +EPD+
Sbjct: 435 IEPDD 439



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD---MYAKCGCVVDAYFVFSGI 297
           S++  C  L +L   + +HA + KTG  +  +A S L++   +      +  A  VF  I
Sbjct: 7   SLLHNCKTLQSL---RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           +E N+++WNTM  G +  +  V  + L+  M   GL PN  T+  +L AC+      +G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/580 (36%), Positives = 338/580 (58%), Gaps = 13/580 (2%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           AT   T    L +C         K+ HA +I +GL+++ +  N L+  Y K G ++ A++
Sbjct: 359 ATNYVTFTTALSACYNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQR 415

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           V   MP R  V+WN +IG +  N     A+  F N+LRE   P +  T+ ++L A  +  
Sbjct: 416 VCKIMPDRDEVTWNALIGGHADNKEPNAAIEAF-NLLREEGVPVNYITIVNLLSAFLSPD 474

Query: 150 DVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           D+ +    +H   + A  +   FV ++L+ +YA+CG ++ ++ +F+ +  +N  TW++++
Sbjct: 475 DLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAIL 534

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
           +        EEAL L  + +  G+  +QF+ S        L  L +G+Q+H+++ K GF 
Sbjct: 535 SANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFE 594

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           SN +  ++ +DMY KCG + D + +      ++   WN +IS  +RH    +    F +M
Sbjct: 595 SNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEM 654

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
              GL P+  T++S+LSACSH G+V++G +YF  M  +  V   + H  C+ID+LGRAG 
Sbjct: 655 LDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGK 714

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA + I  MP   T  +W SLLA+C+ + NLELA  AA +LF ++  +   ++L SN+
Sbjct: 715 LTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNV 774

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKL 500
            A+ RRW +V   RK +    +KK+ + SWV++K        G + HP+ AEIY+KLE+L
Sbjct: 775 CASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEEL 834

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
            + +++ GY P+T + L D ++ +K+  L +HSE++AL FGL+    G P+RI KNLR+C
Sbjct: 835 KKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVC 894

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCHS  K  S+I GR+ I+RD  RFHHF++G CSC D+W
Sbjct: 895 GDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 211/420 (50%), Gaps = 11/420 (2%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T+  T+ A L  C   +    G+  H  ++  GL ++    N L++ YS+ G    A  V
Sbjct: 259 TDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFV 318

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACAAKR 149
           F +M +R ++SWN+++ S+  NG    A+ L I ML+  K T Y  FT  + L AC    
Sbjct: 319 FHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFT--TALSAC---Y 373

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           ++   K +H F +   +  N+ +G AL+ +Y K G ++ A RV + MP+R+EVTW++++ 
Sbjct: 374 NLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIG 433

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI-QGKQVHAVLCKTGFG 268
           G   N+    A+  F   +  G+  N  TI +++ A      L+  G  +HA +   GF 
Sbjct: 434 GHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFE 493

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
              F  SSL+ MYA+CG +  + ++F  +  KN   WN ++S  + +    E + L  KM
Sbjct: 494 LETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKM 553

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           +  G+H ++ ++    +   ++ ++++G+    L++K H    N +  +  +D+ G+ G 
Sbjct: 554 RNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIK-HGFESNDYVLNATMDMYGKCGE 612

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL--FGMEPDNAGNHLLLS 446
           I + +  IL  P   +   W  L+++   +   + A  A  ++   G+ PD+     LLS
Sbjct: 613 IDDVFR-ILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLS 671



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 40  LQSCARERAPVRGKV-CHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           + +C R      G    HA +I  GL  D      L++FY   G ++    VF E+ +  
Sbjct: 65  VTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPN 124

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           IVSW +++  Y  NG  +E ++++  + R+G    +E  +++V+ +C    D     Q+ 
Sbjct: 125 IVSWTSLMVGYAYNGCVKEVMSVYRRLRRDG-VYCNENAMATVIRSCGVLVDKMLGYQVL 183

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +K+ +D  V V  +L+ ++  C  I +AS VF+ M ER+ ++W+S++   V N   E
Sbjct: 184 GSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCE 243

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           ++L  F + +    + +  TIS+++  C     L  G+ +H ++ K+G  SN+   +SL+
Sbjct: 244 KSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLL 303

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            MY++ G   DA FVF  + E++++ WN+M++    +      + L  +M Q     N  
Sbjct: 304 SMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYV 363

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+ + LSAC ++  ++   ++  L+   HN++      + ++ + G+ G +  A  +   
Sbjct: 364 TFTTALSACYNLETLKIVHAFVILLGLHHNLIIG----NALVTMYGKFGSMAAAQRVCKI 419

Query: 399 MPFDATASMWGSLLA 413
           MP D     W +L+ 
Sbjct: 420 MP-DRDEVTWNALIG 433



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 175/338 (51%), Gaps = 4/338 (1%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           YSK G I  A+ VFD+MP+R   SWN ++  +   G  Q+A+  F +ML  G  P S + 
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRP-SSYV 60

Query: 138 VSSVLCACAAKRDVFECK-QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            +S++ AC     + E   Q+H   +K  +  +VFVGT+LL  Y   G +++   VF+ +
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
            E N V+W+S++ G+  N   +E + ++RR +  G+  N+  +++VI +C  L   + G 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           QV   + K+G  + +  A+SL+ M+  C  + +A  VF  ++E++ + WN++I+    + 
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              + +  F +M+      +  T  ++L  C     +  G+    ++VK   +  NV   
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKS-GLESNVCVC 299

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           + ++ +  +AG   +A + + +   +     W S++AS
Sbjct: 300 NSLLSMYSQAGKSEDA-EFVFHKMRERDLISWNSMMAS 336



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 199/416 (47%), Gaps = 22/416 (5%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           + +   ++SC      + G      +I  GL+     +N LI+ +  C  I  A  VFD+
Sbjct: 161 NAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDD 220

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSEFTVSSVLCACAAKRDVF 152
           M +R  +SWN+II +   NG  ++++  F  M     KT Y   T+S++L  C + +++ 
Sbjct: 221 MKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDY--ITISALLPVCGSAQNLR 278

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             + LH   +K+ ++ NV V  +LL +Y++ G   DA  VF  M ER+ ++W+SM+A  V
Sbjct: 279 WGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHV 338

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            N  Y  AL L           N  T ++ + AC  L  L   K VHA +   G   N+ 
Sbjct: 339 DNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETL---KIVHAFVILLGLHHNLI 395

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++LV MY K G +  A  V   + +++ V WN +I G + +      +  F  +++ G
Sbjct: 396 IGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEG 455

Query: 333 LHPNEQTYISVLSA-CSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAG 387
           +  N  T +++LSA  S   +++ G     + +  H V+       F  S +I +  + G
Sbjct: 456 VPVNYITIVNLLSAFLSPDDLLDHG-----MPIHAHIVVAGFELETFVQSSLITMYAQCG 510

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            ++ + + I ++  +  +S W ++L++  +Y      E A K +  M  D  G HL
Sbjct: 511 DLNTS-NYIFDVLANKNSSTWNAILSANAHYGP---GEEALKLIIKMRND--GIHL 560



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 127/238 (53%), Gaps = 5/238 (2%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+K G I  A  VF+ MPERNE +W+++++GFV+   Y++A+  F      G+  + + 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 239 ISSVICACAGLAALIQGK-QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
            +S++ AC     + +G  QVHA + K G   ++F  +SL+  Y   G V +   VF  I
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           EE N+V W +++ G++ +    EVM ++ ++++ G++ NE    +V+ +C    +V+K  
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCG--VLVDKML 178

Query: 358 SYFDL-MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
            Y  L  V +  +   V   + +I + G    I EA  +  +M    T S W S++ +
Sbjct: 179 GYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTIS-WNSIITA 235


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/643 (35%), Positives = 348/643 (54%), Gaps = 74/643 (11%)

Query: 31  TELSTLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDT-LTSNILINFYSKCGLISGAR 88
           T+  T     + CAR RA V   ++ HA      L +   L SN +I+ Y + GL   AR
Sbjct: 101 TDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDAR 160

Query: 89  KVFDEMP-------------------------------QRCIVSWNTIIGSYTTNGREQE 117
           + FD++P                                R ++SW  +I  Y+  GR  E
Sbjct: 161 RAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAE 220

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           AV  F +ML +G  P  E TV  +L ACA  +D+   + LH    +  M  +  +  AL+
Sbjct: 221 AVDCFNSMLSDGIEP-DEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALI 279

Query: 178 DVYAKCGLISDASRVFES--------------------------------MPERNEVTWS 205
           D+YAKCG I  A  VF++                                M +R+ VT++
Sbjct: 280 DMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFN 339

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           S++ G++      EAL+LF + +   L  + FT+ S++ ACA L AL QG+ +HA + + 
Sbjct: 340 SLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQR 399

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
               +++  ++L+DMY KCG V +A  VF  +  ++V  W+ MI+G + +      +  F
Sbjct: 400 LVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYF 459

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             M+  G  PN  TYI++L+ACSH  ++++G+ YF+ M   HN+ P + HY CMID+LGR
Sbjct: 460 FWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGR 519

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           +GL+ EA DL+  MP    A +W S+L++CR +++  LA  AA+ L  +EPD    ++ L
Sbjct: 520 SGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQL 579

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKL 497
            NIY  +R+WE+ ++ R+L+ +  VKK    S + + G+        R HP+I EI + +
Sbjct: 580 YNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMM 639

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           E++   +K +GY P T     DV++  K+  L+ HSEK+A+ FGL+ L P +P+ I+KNL
Sbjct: 640 EEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNL 699

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCHS +K  SRI  RE IVRD +RFHHF +G+CSC DFW
Sbjct: 700 RVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 164/368 (44%), Gaps = 67/368 (18%)

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +FD MP    +    +   +  +   +  + L+  M R G      FT   +   CA  R
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVC-TDAFTFHFLFKCCARGR 117

Query: 150 -DVFECKQLHVFALKAAMDRNV-FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
             V  C+ LH    +  +   V  V   ++ +Y + GL  DA R F+ +P ++ V W+++
Sbjct: 118 AHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTV 177

Query: 208 VAGFVQNELYEEALILFRRAQVL-------------------------------GLEYNQ 236
           ++G  +  L ++A  L R +                                  G+E ++
Sbjct: 178 ISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDE 237

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG----------- 285
            T+  ++ ACA L  L+ G+ +H ++ + G   +     +L+DMYAKCG           
Sbjct: 238 VTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDA 297

Query: 286 -----------CVVDAY----------FVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                       ++D Y          ++F  +E++++V +N++I+G+    R  E ++L
Sbjct: 298 LGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLL 357

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M++  L  +  T +S+L+AC+ +G + +G++     ++Q  V  +++  + ++D+  
Sbjct: 358 FMQMRRHDLRADNFTMVSLLTACASLGALPQGRA-LHACIEQRLVEVDIYLGTALLDMYL 416

Query: 385 RAGLIHEA 392
           + G + EA
Sbjct: 417 KCGRVEEA 424


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 351/582 (60%), Gaps = 24/582 (4%)

Query: 36   LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
            L ++L SCA  +    G+  H   +  GL+ DT  SN+L+  Y +CG +S   KVF+ M 
Sbjct: 484  LISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMA 543

Query: 96   QRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +   VSWNT++G   ++     E V +F NM+R G  P ++ T  ++L A +    +   
Sbjct: 544  EHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIP-NKVTFINLLAALSPLSVLELG 602

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE-VTWSSMVAGFVQ 213
            KQ+H   +K  +  +  V  AL+  YAK G +     +F +M +R + ++W+SM++G++ 
Sbjct: 603  KQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIY 662

Query: 214  NELYEEAL----ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            N   +EA+    ++    Q++    +  T S ++ ACA +AAL +G ++HA   ++   S
Sbjct: 663  NGNLQEAMDCVWLMIHSGQIM----DCCTFSIILNACASVAALERGMELHAFGIRSHLES 718

Query: 270  NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            ++   S+LVDMY+KCG V  A  +F+ + ++N   WN+MISG++RH    + + +FE+M 
Sbjct: 719  DVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEML 778

Query: 330  QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            ++   P+  T++SVLSACSH G+VE+G  YF++M   H +LP + HYSC+ID+LGRAG I
Sbjct: 779  RSRESPDHVTFVSVLSACSHAGLVERGLEYFEMM-PDHGILPQIEHYSCVIDLLGRAGKI 837

Query: 390  HEAYDLILNMPFDATASMWGSLLASCRNYR---NLELAEIAAKQLFGMEPDNAGNHLLLS 446
             +  + I  MP +  A +W ++L +CR  +   N++L   A++ L  +EP N  N++L S
Sbjct: 838  DKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLAS 897

Query: 447  NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLE 498
            N +AA   WE+ A+AR  +R +  KKE  +SWV         I G R+HP   EIY KL 
Sbjct: 898  NFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLN 957

Query: 499  KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
             L++ ++  GY P TE+ L+D+E+  K+ELL +HSEKLA+ F L     G PIRIMKNLR
Sbjct: 958  FLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSG-PIRIMKNLR 1016

Query: 559  ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +CGDCH   ++ S++  R+ I+RD  RFHHF +G CSC D+W
Sbjct: 1017 VCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 186/373 (49%), Gaps = 11/373 (2%)

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           ++  G ++D    + L++ +++ GL   A+ +F  + Q+  V+ N +I         +EA
Sbjct: 301 VLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEA 360

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-----CKQLHVFALKAAM-DRNVFV 172
           V +F+            + V   L +  A+  + E      + +H   L+  + D  + V
Sbjct: 361 VKIFVGTRNTVDVNADTYVV---LLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAV 417

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
              L+++YAKCG I  AS++F+ M   + ++W+++++   QN   EEA++ +   +   +
Sbjct: 418 SNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCI 477

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             + F + S + +CAGL  L  G+QVH    K G   +   ++ LV MY +CG + D + 
Sbjct: 478 SPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWK 537

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
           VF+ + E + V WNTM+   +     + E++ +F  M + GL PN+ T+I++L+A S + 
Sbjct: 538 VFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLS 597

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           ++E GK     ++K H V+ +    + +I    ++G +     L  NM     A  W S+
Sbjct: 598 VLELGKQVHAAVMK-HGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSM 656

Query: 412 LASCRNYRNLELA 424
           ++      NL+ A
Sbjct: 657 ISGYIYNGNLQEA 669



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 155/314 (49%), Gaps = 16/314 (5%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H ++I  GLN+D    N L+N Y+K   ++ A +VFDEMP+R  VSW  ++  Y  +G  
Sbjct: 84  HVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIA 143

Query: 116 QEAVALFINMLRE---GKTPYSEFTVSSVLCAC---AAKRDVFECKQLHVFALKAAMDRN 169
           +EA  +F  MLRE   G  P S FT  ++L AC      R  F   Q+H    K     N
Sbjct: 144 EEAFRVFRAMLREVQAGCRPTS-FTFGTLLRACQDGGPDRLGFAV-QVHGLVSKTEYASN 201

Query: 170 VFVGTALLDVYAKC--GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
             V  AL+ +Y  C  G    A RVF+  P R+ +TW+++++ + +         LF+  
Sbjct: 202 TTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDM 261

Query: 228 Q----VLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYA 282
           Q     + L   + T  S+I A +  +       QV   + K+G  S+++  S+LV  +A
Sbjct: 262 QRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFA 321

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           + G   +A  +F  +++KN V  N +I G  R   S E + +F   +   +  N  TY+ 
Sbjct: 322 RHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNT-VDVNADTYVV 380

Query: 343 VLSACSHIGMVEKG 356
           +LSA +   + E+G
Sbjct: 381 LLSALAEYSISEEG 394



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 158/330 (47%), Gaps = 18/330 (5%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D    + LHV  +K  ++ ++F+   L++ YAK   ++ AS+VF+ MPERN V+W+ +V+
Sbjct: 76  DANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVS 135

Query: 210 GFVQNELYEEALILFR---RAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCK 264
           G+V + + EEA  +FR   R    G     FT  +++ AC   G   L    QVH ++ K
Sbjct: 136 GYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSK 195

Query: 265 TGFGSNMFAASSLVDMYAKC--GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
           T + SN    ++L+ MY  C  G  + A  VF G   ++++ WN ++S +++        
Sbjct: 196 TEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTF 255

Query: 323 ILFEKMQQAG----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            LF+ MQ+      L P E T+ S+++A S             + V +     +++  S 
Sbjct: 256 TLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSA 315

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD- 437
           ++    R GL  EA D+ L++      ++ G ++   R     + +E A K   G     
Sbjct: 316 LVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQ----DFSEEAVKIFVGTRNTV 371

Query: 438 --NAGNHLLLSNIYAANRRWEEVARARKLI 465
             NA  +++L +  A     EE  R  +++
Sbjct: 372 DVNADTYVVLLSALAEYSISEEGLRIGRVV 401



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 2/182 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +CA   A  RG   HA  I   L +D +  + L++ YSKCG +  A K+F+ M
Sbjct: 687 TFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSM 746

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            QR   SWN++I  Y  +G  ++A+ +F  MLR  ++P    T  SVL AC+    V   
Sbjct: 747 TQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESP-DHVTFVSVLSACSHAGLVERG 805

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
            +         +   +   + ++D+  + G I       + MP E N + W +++    Q
Sbjct: 806 LEYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQ 865

Query: 214 NE 215
           ++
Sbjct: 866 SK 867


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/601 (36%), Positives = 343/601 (57%), Gaps = 18/601 (2%)

Query: 16  FSSSAIASASANANATE------LSTLQATLQSCARERAPVRGKVCHAKII--GMGLNND 67
           F+S  I S S++ N  +      L    + +Q C   ++ +  K  HA  I  G+   N 
Sbjct: 11  FTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKL--KQIHAFSIRHGVPPQNP 68

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
               +++    S    +S A ++F+++    I +WNT+I  +  +     AV LF  M  
Sbjct: 69  DFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHA 128

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
                    T   +  A A   DV   + +H   ++   D   FV  +L+ +Y+  G + 
Sbjct: 129 ASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLX 188

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
            A +VFE M  R+ V W+S++ GF  N +  EAL L+R     G+E + FT+ S++ AC 
Sbjct: 189 SAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACV 248

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            L AL  G++VH  + K G   N  A+++L+D+Y+KCG   DA  VF  +EE++VV W +
Sbjct: 249 ELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTS 308

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           +I G + +    E + LF ++++ GL P+E T++ VL ACSH GM+++G +YF  M +++
Sbjct: 309 LIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEY 368

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            +LP + H+ CM+D+L RAG + +AYD I NMP    A +W +LL +C  + +LEL E+A
Sbjct: 369 GILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVA 428

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK----- 482
             ++  +E  ++G+ +LLSN+YA+ RRW +V   RK++    VKK    S VE+K     
Sbjct: 429 RAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYE 488

Query: 483 ---GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
              G R+HP+  E Y+ L K+ + +K  GY P T + L D+E+  K+  L HH+EK+A+ 
Sbjct: 489 FIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIA 548

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           F L+   PG PIRIMKNLR+C DCH  +K  S++  RE IVRD +RFHHF +GSCSC D+
Sbjct: 549 FMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDY 608

Query: 600 W 600
           W
Sbjct: 609 W 609


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/575 (37%), Positives = 340/575 (59%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+       GK+ HA +I +GL+ + +  N L+  Y+K GL+  A+KVF  M
Sbjct: 335 TFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTM 394

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
           P+R  V+WN +IG +  +    EA+  F  ++RE   P +  T+S+VL AC A  D+ E 
Sbjct: 395 PKRDGVTWNALIGGHADSEEPDEALKAF-KLMREEGVPINYITISNVLGACLAPNDLLEH 453

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H F +      + +V  +L+ +YAKCG ++ ++ +F+ +  +N   W++M+A    
Sbjct: 454 GMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAH 513

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   EEAL      +  G+  ++F+ S  + A A LA L +G+Q+H +  K G  SN F 
Sbjct: 514 HGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFV 573

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           AS+ +DMY KCG + D   +      ++ + WN + S FSRH    +    F +M   G+
Sbjct: 574 ASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGV 633

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T++S+LSACSH GMVE+G +Y+D M+K+  +   + H  C+ID+LGR+G   EA 
Sbjct: 634 KPDHVTFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAE 693

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I  MP   T  +W SLLA+C+ + NLEL   A + L  ++P +   ++L SNI A   
Sbjct: 694 TFIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTG 753

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           +WE+V + R+ +  +++KK+ + SWV++K        G  +HP+ +EIY+KLE+L + +K
Sbjct: 754 KWEDVEKIRRQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIK 813

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY P+  + L D ++ +K+  L +HSE+LAL +GL+    G  ++I KNLR+CGDCHS
Sbjct: 814 EAGYIPDISYALQDTDEEQKEHNLWNHSERLALAYGLISSPEGSTLKIFKNLRVCGDCHS 873

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KFAS I GR+ ++RD  RFH F+ G CSC D+W
Sbjct: 874 VYKFASGILGRKIVLRDPYRFHQFSGGQCSCTDYW 908



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 208/413 (50%), Gaps = 6/413 (1%)

Query: 40  LQSCAR-ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           + +C R E   + G   H  I+ +GL +D      L++ Y   GL + A KVF EM  + 
Sbjct: 36  VTACERSEWMLIEGVQVHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKN 95

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +VSW  ++ +Y   G     + ++  M  EG +  ++ T+SSV+  C +  +     Q+ 
Sbjct: 96  VVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSC-NDNTMSSVISTCVSLENELLGYQVL 154

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              +K  ++ NV V  +L+ ++   G + +A  VF  M E + ++W+SM+A +++N L +
Sbjct: 155 GHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCK 214

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           E+L  F     +  E N  T+S+++  C  +  L  G+ +H+++ K G+ SN+ A+++L+
Sbjct: 215 ESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLI 274

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            MY+  G   DA  VF G+ EK+++ WN+M++ +++    ++ + L   M       N  
Sbjct: 275 TMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYV 334

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+ S L+ACS      +GK    L++    +  NV   + ++ +  ++GL+ EA  +   
Sbjct: 335 TFTSALAACSDPEFATEGKILHALVI-HVGLHENVIVGNALVTLYAKSGLMIEAKKVFQT 393

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           MP       W +L+    +    + A  A K +   E     N++ +SN+  A
Sbjct: 394 MP-KRDGVTWNALIGGHADSEEPDEALKAFKLM--REEGVPINYITISNVLGA 443



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 157/314 (50%), Gaps = 1/314 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ + + +C      + G      +I  GL  +   +N LI+ +   G +  A  VF  
Sbjct: 132 NTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSG 191

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +   +SWN++I +Y  NG  +E++  F  M R  K   S  T+S++L  C +  ++  
Sbjct: 192 MDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINST-TLSTMLAGCGSVDNLKW 250

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H   LK   + NV     L+ +Y+  G   DA  VF+ M E++ ++W+SM+A + Q
Sbjct: 251 GRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQ 310

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    +AL L      +    N  T +S + AC+      +GK +HA++   G   N+  
Sbjct: 311 DGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIV 370

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV +YAK G +++A  VF  + +++ V WN +I G +      E +  F+ M++ G+
Sbjct: 371 GNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGV 430

Query: 334 HPNEQTYISVLSAC 347
             N  T  +VL AC
Sbjct: 431 PINYITISNVLGAC 444



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 153/293 (52%), Gaps = 3/293 (1%)

Query: 122 FINMLREGKTPYSEFTVSSVLCACA-AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           F N +R+     S   V+S++ AC  ++  + E  Q+H F +K  +  +VFVGT+L+ +Y
Sbjct: 16  FFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLSDVFVGTSLVHLY 75

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
              GL +DA +VF+ M  +N V+W++++  +V        + ++RR +  G+  N  T+S
Sbjct: 76  GNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCNDNTMS 135

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           SVI  C  L   + G QV   + K G  +N+  A+SL+ M+   G V +A +VFSG++E 
Sbjct: 136 SVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEH 195

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           + + WN+MI+ + R+    E +  F  M +     N  T  ++L+ C  +  ++ G+   
Sbjct: 196 DTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIH 255

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            L++K      NV   + +I +   AG   +A +L+     +     W S++A
Sbjct: 256 SLVLK-FGWNSNVCASNTLITMYSDAGRCEDA-ELVFQGMVEKDMISWNSMMA 306



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 3/208 (1%)

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA-GLAALIQGKQVHAVLCKTG 266
           ++GFV+   Y E++  F   +  G++ +   ++S++ AC      LI+G QVH  + K G
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             S++F  +SLV +Y   G   DA  VF  +  KNVV W  ++  +  +     VM ++ 
Sbjct: 61  LLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYR 120

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M+  G+  N+ T  SV+S C  +     G      ++K + +  NV   + +I + G  
Sbjct: 121 RMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIK-YGLETNVSVANSLISMFGYF 179

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLAS 414
           G + EA  +   M    T S W S++A+
Sbjct: 180 GSVEEACYVFSGMDEHDTIS-WNSMIAA 206


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 334/576 (57%), Gaps = 13/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE- 93
           T    L+SCA    P+ G   H +I  +G   +      LI+ Y K  L+  ARKVF+E 
Sbjct: 51  TFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEEN 110

Query: 94  -MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
              ++  V +N ++  Y +N +  EAV LF  M  EG  P +  T+  ++ AC +  ++ 
Sbjct: 111 FHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEG-VPVNSVTLLGLIPACVSPINLE 169

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
               LH   LK   D +V V    + +Y KCG ++ A ++F+ MP +  ++W++MV+G+ 
Sbjct: 170 LGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYA 229

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN L    L L+R   + G+  +  T+  V+ +CA L A   G +V   +  +GF SN F
Sbjct: 230 QNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPF 289

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L++MYA+CG +  A  VF G+ E+ +V W  +I G+  H      + LF++M ++G
Sbjct: 290 LNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG 349

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+   ++ VLSACSH G+ ++G  YF +M + + + P   HYSCM+D+LGRAG + EA
Sbjct: 350 IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEA 409

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
             LI +MP     ++WG+LL +C+ ++N+ELAE+A +++  +EP+N G ++LLSNIY+  
Sbjct: 410 QTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNA 469

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
              + V R R ++++ ++KK+   S+VE+KG+        RNH +  EIY  LE+L   +
Sbjct: 470 NNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAII 529

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
            +   KPE ++     +D   +  +  HSEKLA+ FGL+    G  + I+KNLRIC DCH
Sbjct: 530 MQEFGKPEKDNREESNKDGFTRVGV--HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCH 587

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            F K  S+I  R+  VRD  RFHHF NGSCSC D+W
Sbjct: 588 LFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 168/342 (49%), Gaps = 7/342 (2%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             WNT +       +  +A++L+  MLR G  P + FT    L +CAA        Q H 
Sbjct: 15  TPWNTQLRELAKRCQFLQALSLYPQMLRHGDRP-NAFTFPFALKSCAALSLPILGSQFHG 73

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELY 217
              K       FV T L+ +Y K  L+ +A +VFE      ++T  ++++V+G+V N   
Sbjct: 74  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 133

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EA++LFR+    G+  N  T+  +I AC     L  G  +H    K GF S++   +  
Sbjct: 134 SEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCF 193

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY KCG V  A  +F  +  K ++ WN M+SG++++  +  V+ L+  M   G+HP+ 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T + VLS+C+++G    G    +  ++      N F  + +I++  R G + +A  +  
Sbjct: 254 VTLVGVLSSCANLGAQSVGHE-VEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFD 312

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPD 437
            MP + T   W +++     + + E+A    K++   G+EPD
Sbjct: 313 GMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPD 353


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 341/593 (57%), Gaps = 48/593 (8%)

Query: 31  TELSTLQAT---LQSCARERAPVRG----------KVCHAKIIGMGLNNDTLTSNILINF 77
           + L  LQA+   L S    + P+ G          K  H++II +GL+ D      +I F
Sbjct: 2   SSLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKF 61

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
            +    IS +  +  ++ + CI                     ++  ML +  +P ++FT
Sbjct: 62  CA----ISKSGYLRWQLARNCIF--------------------MYSRMLHKSVSP-NKFT 96

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
              ++ AC     + E KQ+H   LK     + F    L+ +Y     +  A RVF++MP
Sbjct: 97  YPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP 156

Query: 198 ER--NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           +R  N V+W++M+A +VQ+    EA  LF R ++  +  ++F  +S++ AC GL AL QG
Sbjct: 157 QRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 216

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           K +H  + K+G   +   A++++DMY KCGC+  A  VF+ + +K +  WN MI G + H
Sbjct: 217 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 276

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
            +    + LF++M++  + P+  T+++VLSAC+H G+VE+GK YF  M +   + P + H
Sbjct: 277 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 336

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           + CM+D+LGRAGL+ EA  LI  MP +  A + G+L+ +CR + N EL E   K++  +E
Sbjct: 337 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 396

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNH 487
           P N+G ++LL+N+YA+  RWE+VA+ RKL+ D  VKK    S +E        I G R H
Sbjct: 397 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 456

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
           P+  EIY+KL++++E ++ +GY P+T+  LHD+++  K+  L +HSEKLA+ FGL+   P
Sbjct: 457 PQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKP 516

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G  +RI KNLRIC DCH   K  S++  RE I+RD NRFHHF  G CSC D+W
Sbjct: 517 GETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/601 (36%), Positives = 342/601 (56%), Gaps = 18/601 (2%)

Query: 16  FSSSAIASASANANATE------LSTLQATLQSCARERAPVRGKVCHAKII--GMGLNND 67
           F+S  I S S++ N  +      L    + +Q C   ++ +  K  HA  I  G+   N 
Sbjct: 11  FTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKL--KQIHAFSIRHGVPPQNP 68

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR 127
               +++    S    +S A ++F+++    I +WNT+I  +  +     AV LF  M  
Sbjct: 69  DFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHA 128

Query: 128 EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
                    T   +  A A   DV   + +H   ++   D   FV  +L+ +Y+  G   
Sbjct: 129 ASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAE 188

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
            A +VFE M  R+ V W+S++ GF  N +  EAL L+R     G+E + FT+ S++ AC 
Sbjct: 189 SAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACV 248

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            L AL  G++VH  + K G   N  A+++L+D+Y+KCG   DA  VF  +EE++VV W +
Sbjct: 249 ELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTS 308

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           +I G + +    E + LF ++++ GL P+E T++ VL ACSH GM+++G +YF  M +++
Sbjct: 309 LIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEY 368

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            +LP + H+ CM+D+L RAG + +AYD I NMP    A +W +LL +C  + +LEL E+A
Sbjct: 369 GILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVA 428

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK----- 482
             ++  +E  ++G+ +LLSN+YA+ RRW +V   RK++    VKK    S VE+K     
Sbjct: 429 RAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYE 488

Query: 483 ---GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
              G R+HP+  E Y+ L K+ + +K  GY P T + L D+E+  K+  L HH+EK+A+ 
Sbjct: 489 FIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIA 548

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           F L+   PG PIRIMKNLR+C DCH  +K  S++  RE IVRD +RFHHF +GSCSC D+
Sbjct: 549 FMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDY 608

Query: 600 W 600
           W
Sbjct: 609 W 609


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 337/607 (55%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----------------------------- 65
           T    L+SCA+ +A   G+  H  ++ +G +                             
Sbjct: 90  TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 149

Query: 66  --NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
              D ++   LI  Y+  G I+ A+K+FDE+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 150 SHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFK 209

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ SV+ ACA    +   +Q+H +        N+ +  AL+D+Y KC
Sbjct: 210 EMMKTNVRP-DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC 268

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +FE +  ++ ++W++++ G+    LY+EAL+LF+     G   N  T+ S++
Sbjct: 269 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 328

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A  VF  I  ++
Sbjct: 329 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 388

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     +F +M++  + P++ T++ +LSACSH GM++ G+  F 
Sbjct: 389 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR 448

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + + P + HY CMID+LG +GL  EA ++I  M  +    +W SLL +C+ + N+
Sbjct: 449 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 508

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E  A+ L  +EP N G+++LLSNIYA   RW EVA+ R L+ D  +KK    S +EI
Sbjct: 509 ELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEI 568

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HHS
Sbjct: 569 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 628

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 629 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 688

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 689 CSCNDYW 695



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 203/393 (51%), Gaps = 39/393 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSY 109
           ++ HA++I  GL+N     + LI F        G   A  VF+ + +  ++ WNT+   +
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +     A+ L++ M+  G  P   +T   +L +CA  +   E +Q+H   LK   D +
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNC-YTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 170 VFVGTALLDVYAKCGLISDASRVFES-------------------------------MPE 198
           ++V T+L+ +Y + G + DA +VF+                                +P 
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           ++ V+W++M++G+ +    +EAL LF+      +  ++ T+ SV+ ACA  A++  G+QV
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           H+ +   GFGSN+   ++L+D+Y KCG V  A  +F G+  K+V+ WNT+I G++     
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYS 377
            E ++LF++M ++G  PN+ T +S+L AC+H+G +E G+     + K+   + N   H +
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 378 CMIDILGRAGLIHEA---YDLILNMPFDATASM 407
            +ID+  + G I  A   +D ILN    +  +M
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAM 395


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 327/593 (55%), Gaps = 46/593 (7%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA--RKVFDEMPQRCIVSWNTIIGSYT 110
           K  H  ++  GL+        LI   +K G+      R+V + +  R    W  +I  YT
Sbjct: 67  KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYT 126

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
             G+  EA+A++  M +E  TP S FT S++L AC +  D+   +Q H    +      V
Sbjct: 127 IEGKFDEAIAMYGCMRKEEITPVS-FTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFV 185

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPER------------------------------- 199
           +VG  ++D+Y KCG I  A +VF+ MPER                               
Sbjct: 186 YVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTK 245

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V W++MV GF QN   +EAL  F R +  G+  ++ T++  I ACA L A     +  
Sbjct: 246 DMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAV 305

Query: 260 AVLCKTGF--GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
            +  K+G+    ++   S+L+DMY+KCG V +A  VF  +  KNV  +++MI G + H R
Sbjct: 306 QIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGR 365

Query: 318 SVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           + E + LF  M  Q  + PN  T++  L+ACSH G+V++G+  F  M +   V P   HY
Sbjct: 366 AQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHY 425

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436
           +CM+D+LGRAG + EA +LI  M  +    +WG+LL +CR + N ++AEIAA+ LF +EP
Sbjct: 426 TCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEP 485

Query: 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---------GKRNH 487
           D  GN++LLSN+Y++   W  V   RKLI++  +KK  + SWV  K         G  NH
Sbjct: 486 DIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNH 545

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
           P   +I  KLE+LVE +  LGY+P+     +DV D+ K+ +LI H+EKLAL F L+    
Sbjct: 546 PMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNR 605

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              I+IMKNLR+C DCH FM+ AS + GR  I+RD  RFHHF +G+CSC DFW
Sbjct: 606 DYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 186/437 (42%), Gaps = 86/437 (19%)

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD--ASRV 192
           E  VSS++       ++ + KQ+H   L+  +D++ ++ T L+    K G+  D    RV
Sbjct: 47  ELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRV 106

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILF---RRAQVLGLEYNQFTISSVICACAGL 249
            E +  RN   W++++ G+     ++EA+ ++   R+ ++  +    FT S+++ AC  +
Sbjct: 107 IEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVS---FTFSALLKACGSM 163

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV------- 302
             L  G+Q HA   +      ++  ++++DMY KCG +V A  VF  + E++V       
Sbjct: 164 GDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELI 223

Query: 303 ------------------------VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
                                   V W  M++GF+++A+  E +  F++M+++G+  +E 
Sbjct: 224 AAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEV 283

Query: 339 TYISVLSACSHIGM---------------------VEKGKSYFDLMVKQHNVL------- 370
           T    +SAC+ +G                      V  G +  D+  K  NV        
Sbjct: 284 TVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFV 343

Query: 371 ----PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA-----TASMWGSLLASCRNYRNL 421
                NVF YS MI  L   G   EA DL   M         T +  G+L A   +    
Sbjct: 344 SMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVD 403

Query: 422 ELAEIAAK--QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           +  ++ A   Q FG+EP       ++  +  A R  E    A +LI+   V+      W 
Sbjct: 404 QGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQE----ALELIKTMSVEPH-GGVWG 458

Query: 480 EIKGK---RNHPRIAEI 493
            + G     N+P IAEI
Sbjct: 459 ALLGACRIHNNPDIAEI 475


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/637 (34%), Positives = 343/637 (53%), Gaps = 90/637 (14%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCG---------LISGARKVFDEMPQRCI---- 99
           ++ H ++I +G       +N L++ Y  C          L++ ARKVFDE P+  I    
Sbjct: 160 QMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPS 219

Query: 100 -----------------------------VSWNTIIGSYTTNGREQEAVALFINMLREGK 130
                                        V+WN +I  Y   G  +EA   F  M   G 
Sbjct: 220 WTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMG- 278

Query: 131 TPYSEFTVSSVLCACAA---KRDVFEC-KQLHVFALKAAMD------------------- 167
               E+T +S++ AC +   K  +F C +Q+H + L+  ++                   
Sbjct: 279 IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTK 338

Query: 168 ----------------RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                           R++    A+L  Y     I +A+ +F  MPERN +TW+ M++G 
Sbjct: 339 YDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGL 398

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            QN   EE L LF + +  GLE   +  +  I AC+ L +L  G+Q+H+ + + G  S +
Sbjct: 399 AQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGL 458

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
            A ++L+ MY++CG V  A  VF  +   + V WN MI+  ++H   V+ + LFE+M + 
Sbjct: 459 SAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKE 518

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            + P+  T++++L+AC+H G++++G+ YFD M  ++ + P   HY+ +ID+L RAG+  +
Sbjct: 519 DILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLK 578

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A  +I +MPF+A A +W +LLA CR + N+EL   AA +L  + P   G +++LSN+YAA
Sbjct: 579 AQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAA 638

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEE 503
             +W+EVAR R L+R+  VKKE   SWVE++            HP +  +Y+ L++LV E
Sbjct: 639 LGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNE 698

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           MKKLGY P+T+  LHD+E   K+  L  HSEKLA+ +G+M L  G  IR+ KNLRICGDC
Sbjct: 699 MKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDC 758

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+  K+ S++  RE +VRD  RFHHF NG CSC ++W
Sbjct: 759 HNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 202/479 (42%), Gaps = 120/479 (25%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--------------- 96
            +  HA I+  G   +T   N LIN Y K   I+ ARK+FD++P+               
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 97  ------------------RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
                             R  VS+N +I +Y+       A+ LF+ M R G  P   FT 
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLP-DPFTF 142

Query: 139 SSVLCACAAKRD-VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG---------LISD 188
           SSVL A +   D    C+ LH   +K        V  ALL  Y  C          L++ 
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 189 ASRVFESMPERN--EVTWSSMVAGFVQNE------------------------------- 215
           A +VF+  P+    E +W++M+AG+V+N+                               
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAG----LAALIQGKQVHAVLCKTGF-GSN 270
           LYEEA   FRR   +G++ +++T +S+I AC      +     G+QVH  + +T    S+
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSH 322

Query: 271 MFAAS---SLVDMYAKCGCVVDAYFV-------------------------------FSG 296
            F  S   +L+  Y K   +++A  V                               FS 
Sbjct: 323 HFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSE 382

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           + E+NV+ W  MISG +++    E + LF +M+  GL P +  +   ++ACS +G ++ G
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG 442

Query: 357 KSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +     +++  H+    +   + +I +  R G++  A  + L MP+  + S W +++A+
Sbjct: 443 QQIHSQVIRLGHD--SGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVS-WNAMIAA 498



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H+++I +G ++     N LI  YS+CG++  A  VF  MP    VSWN +I +   
Sbjct: 442 GQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQ 501

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ-LHVFALKAAMDRNV 170
           +G   +A+ LF  M++E   P    T  ++L AC     + E +        +  +    
Sbjct: 502 HGHGVKAIELFEQMMKEDILP-DRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGE 560

Query: 171 FVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
                L+D+  + G+   A  V +SMP E     W +++AG
Sbjct: 561 DHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAG 601



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 33/136 (24%)

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
           I  + VHA +  +GF  N F  + L+++Y K   +  A  +F  I + ++V   T++S +
Sbjct: 22  IIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAY 81

Query: 313 S-------------------RHARSVEVMI--------------LFEKMQQAGLHPNEQT 339
           S                   R   S   MI              LF +M++ G  P+  T
Sbjct: 82  SSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFT 141

Query: 340 YISVLSACSHIGMVEK 355
           + SVLSA S I   E+
Sbjct: 142 FSSVLSALSLIADEER 157


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/525 (39%), Positives = 312/525 (59%), Gaps = 61/525 (11%)

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           ++ +VL ACA+       K +H  A+++    ++FVG AL+D+YAKCG++ +AS+VF+ +
Sbjct: 15  SLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRI 74

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY---------------------- 234
            E++ V+W++MV G+ Q   +E+AL LF + +   +E                       
Sbjct: 75  KEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETL 134

Query: 235 ------------------------------NQFTISSVICACAGLAALIQGKQVHAVLCK 264
                                         N FTIS  + ACA LAAL  G+Q+HA + +
Sbjct: 135 DVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILR 194

Query: 265 TGFGSN-MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
             F S  ++ A+ L+DMYAK G +  A FVF  +++KN V W ++++G+  H R  E + 
Sbjct: 195 NHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALE 254

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           +F++M++ GL P+  T + VL ACSH GM+++G  +F+ M K+  V+P   HY+CM+D+L
Sbjct: 255 VFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLL 314

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
           GRAG ++EA +LI  M  + ++ +W +LL+ CR + N+EL E AAKQL  +  +N G++ 
Sbjct: 315 GRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYT 374

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYS 495
           LLSNIYA  RRW++VAR R L+++S ++K    SWV+ K          + HP+  +IY 
Sbjct: 375 LLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQIYE 434

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMK 555
            L  L + +K LGY PET   LHDV+D  K +LL  HSEKLAL +G++   PG PIRI K
Sbjct: 435 ILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPIRITK 494

Query: 556 NLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+CGDCH+ + + S I   E I+RD +RFHHF  GSCSC  +W
Sbjct: 495 NLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 158/339 (46%), Gaps = 54/339 (15%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ +L   L +CA   A + GK  H   +  G   D    N L++ Y+KCG++  A KVF
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALF----------------------------- 122
           D + ++ +VSWN ++  Y+  GR ++A+ LF                             
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGC 131

Query: 123 --INMLRE--------------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
             +++ RE                    G    + FT+S  L ACA    +   +Q+H +
Sbjct: 132 ETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAY 191

Query: 161 ALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            L+   D   ++V   L+D+YAK G I  A  VF+++ ++N V+W+S++ G+  +   +E
Sbjct: 192 ILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKE 251

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLV 278
           AL +F   + +GL+ +  T+  V+ AC+    + QG +    + K  G        + +V
Sbjct: 252 ALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMV 311

Query: 279 DMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHA 316
           D+  + G + +A  +  G++ E + ++W  ++SG   HA
Sbjct: 312 DLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHA 350


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 310/561 (55%), Gaps = 21/561 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQSC        GK  H+ +I   LN +      + N Y +CG + GA+ VFD M  +  
Sbjct: 195 LQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNA 254

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W  ++  YT   + + A+ LF  M  EG     EF  S VL  C    D    KQ+H 
Sbjct: 255 VTWTGLMVGYTQAKKLEVALELFARMAMEG-VELDEFVFSIVLKVCCXLEDWDMGKQIHS 313

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +K   +  V VGT L+D Y KCG I  A R F  + E N+V+WS++++GF Q+   E+
Sbjct: 314 HIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLED 373

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            + +F   +  G+  N F  +SV  ACA  A L  G Q H    K G  S ++  S++V 
Sbjct: 374 CIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVT 433

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KCG +  A   F  I+E + V W  +ISG++ H  + E +  F +MQ  G+ PN  T
Sbjct: 434 MYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVT 493

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           +I+VL+ACSH G+V + K Y   M + + V P + HY CMID   RAGL+ EA +LI  M
Sbjct: 494 FIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRM 553

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           PF+  A  W SLL  C  + +L+L +IAA+ LF ++P +   ++LL N+Y+A  +WEE  
Sbjct: 554 PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAG 613

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             RKL+ + E+KKE S SW+ +KG+ + P          +L+ E          E D+  
Sbjct: 614 HVRKLMAERELKKEVSCSWISVKGQVHRPV---------RLLNE----------EDDVSC 654

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
              +RK++LL  HSEKLA+ FGL+      PI + KNLR C DCH F K  S + GR+ +
Sbjct: 655 SLPARKEQLL-DHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIV 713

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           VRD  RFHHF +G CSC D+W
Sbjct: 714 VRDSTRFHHFKSGKCSCNDYW 734



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 183/358 (51%), Gaps = 2/358 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           + Q   ++C + R+   G++ H ++     N      N L+  Y  CG     +KVFDEM
Sbjct: 89  SYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEM 148

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSW  +I +Y  NG  ++A+ LF +M   G  P S   +S +L +C     +   
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMS-LLQSCLGPSFLELG 207

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           KQ+H   ++A ++ N+ V TA+ ++Y +CG +  A  VF+ M  +N VTW+ ++ G+ Q 
Sbjct: 208 KQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQA 267

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  E AL LF R  + G+E ++F  S V+  C  L     GKQ+H+ + K G  S +   
Sbjct: 268 KKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVG 327

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           + LVD Y KCG +  AY  F  I E N V W+ +ISGFS+  R  + + +F  ++  G+ 
Sbjct: 328 TPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVV 387

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            N   Y SV  AC+    +  G       +K+  ++  ++  S M+ +  + G +  A
Sbjct: 388 LNSFIYTSVFQACAAQANLNMGSQAHGDAIKR-GLVSYLYGESAMVTMYSKCGRLDYA 444


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 344/616 (55%), Gaps = 52/616 (8%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI--SGARKV 90
           LS L+  L +C   +   R     +++I  G  +DT  ++ L+ F +    I    + ++
Sbjct: 29  LSILETHLHNCHNLKQFNR---ILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQI 85

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD +       WNT++ +Y  +   ++A+ L+  M++    P   +T   V+ ACA +  
Sbjct: 86  FDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGP-DNYTYPLVVQACAVRLL 144

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            F  K++H   LK   D +V+V   L+++YA CG + DA ++F+  P  + V+W+S++AG
Sbjct: 145 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 204

Query: 211 FV----------------------------------QNELYEEALILFRRAQVLGLEYNQ 236
           +V                                  QN +YEEAL++F      G+  ++
Sbjct: 205 YVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDE 264

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV----DMYAKCGCVVDAYF 292
             + SV+ ACA L+ +  GK +H ++ + G  S +   ++L+    DMY KCGCV +A  
Sbjct: 265 VVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALE 324

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF+G+EEK V  WN +I G + +      + +F +M+  G+ PNE T++ VL AC H+G+
Sbjct: 325 VFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGL 384

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           V++G+ +F  M+++H + PNV HY CM+D+LGRAGL++EA  LI +MP     + WG+LL
Sbjct: 385 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
            +C+ + + E+ E   ++L  ++PD+ G H+LLSNI+A+   WE+V   R +++   V K
Sbjct: 445 GACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK 504

Query: 473 EKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
               S +E        + G + HP I ++   L ++ + +K  GY P+T     D+++  
Sbjct: 505 TPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEE 564

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K+  L  HSEKLA+ FGL+ + P  PIRIMKNLRIC DCH+  K  S+   RE +VRD +
Sbjct: 565 KETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRH 624

Query: 585 RFHHFTNGSCSCWDFW 600
           RFH+F  G+CSC D+W
Sbjct: 625 RFHYFKEGACSCMDYW 640



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 27  NANATELS--TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS----K 80
           NAN   L    + + L +CA       GK+ H  +I MG+ +     N LI+ YS    K
Sbjct: 256 NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMK 315

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG +  A +VF+ M ++ + SWN +I     NG  + ++ +F  M   G  P +E T   
Sbjct: 316 CGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIP-NEITFMG 374

Query: 141 VLCACAAKRDVFECK-QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           VL AC     V E +        K  ++ NV     ++D+  + GL+++A ++ ESMP  
Sbjct: 375 VLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMA 434

Query: 200 NEV-TWSSMVA 209
            +V TW +++ 
Sbjct: 435 PDVATWGALLG 445


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 322/559 (57%), Gaps = 44/559 (7%)

Query: 82  GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           G +  AR VF+++P     + N+II  YT     ++A+  +  M+ +G  P   FT  S+
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDP-DRFTFPSL 84

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
             +C     + E KQLH  + K     + ++   L+++Y+ CG +  A +VF+ M  ++ 
Sbjct: 85  FKSCGV---LCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV 141

Query: 202 VTWSSMVAGFVQNEL--------------------------------YEEALILFRRAQV 229
           V+W++M+  + Q +L                                YEEAL LF   Q+
Sbjct: 142 VSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQL 201

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G++ ++ T++S++ AC  L AL  GK +H  + K     ++   ++LVDMYAKCG +  
Sbjct: 202 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 261

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF  + EK+V+ W  +I G +   + ++ + LF +MQ + + P+  T++ VL+ACSH
Sbjct: 262 AMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 321

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+V +G +YF+ M  ++ + P++ HY CM+D+LGRAG I EA DLI NMP      +  
Sbjct: 322 AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV 381

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
            LL++CR + NL +AE AA+QL  ++P N G ++LLSNIY++ + WE   + R+L+ +  
Sbjct: 382 GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERN 441

Query: 470 VKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           +KK    S +E        +KG  +HP+ +EIY  L+ ++  +K  GY P+    L D++
Sbjct: 442 IKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMD 501

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
           +  K+  L  HSEKLA+ FGL+   PG PIR++KNLR+C DCHS MKF S +  RE IVR
Sbjct: 502 EKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVR 561

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHFT GSCSC DFW
Sbjct: 562 DRNRFHHFTKGSCSCRDFW 580



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 201/455 (44%), Gaps = 67/455 (14%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  +  +SC        GK  H     +G  +D    N L+N YS CG +  ARKVFD+M
Sbjct: 80  TFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 136

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALF-----------INMLREGKTPYSEF------- 136
             + +VSW T+IG+Y       EA+ LF            N++  G    S++       
Sbjct: 137 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLF 196

Query: 137 -------------TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
                        T++S+L AC     +   K LHV+  K  ++ +V +GTAL+D+YAKC
Sbjct: 197 NEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKC 256

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G I  A RVF+ MPE++ +TW++++ G        +AL LF   Q+  ++ +  T   V+
Sbjct: 257 GSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVL 316

Query: 244 CACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA------------ 290
            AC+    + +G    +++  K G   ++     +VDM  + G + +A            
Sbjct: 317 AACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPD 376

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
           YFV  G+     +  N +++      R+ + +I  +         N  TY+ + +  S +
Sbjct: 377 YFVLVGLLSACRIHGNLVVA-----ERAAQQLIELDP-------KNGGTYVLLSNIYSSM 424

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
              E  K   +LMV+++   P      C    +G  G++HE     ++ P   ++ ++ +
Sbjct: 425 KNWEAAKKMRELMVERNIKKPP----GCSAIEVG--GVVHEFVKGDVSHP--QSSEIYET 476

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           L    R  ++       ++ LF M+     N L L
Sbjct: 477 LDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSL 511


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/569 (35%), Positives = 333/569 (58%), Gaps = 9/569 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           + SC+     V G  CH   +  GL       N LI  YS+   + GA  V+ E+P   +
Sbjct: 136 ISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDV 195

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            S+N II     NG   EA+ +   M+ E    +   T  +    C+  +D+    Q+H 
Sbjct: 196 FSYNIIINGLLENGYPSEALEVLDRMVDECIV-WDNVTYVTAFGLCSHLKDLRLGLQVHC 254

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
              +   + + FV +A++D+Y KCG I +A +VF  +  +N V+W++++A + QN  +EE
Sbjct: 255 RMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEE 314

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL  F   +V GL  N++T + ++ +CAG++AL  GK +H  + K+GF  ++   ++L++
Sbjct: 315 ALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALIN 374

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+K G +  A+ VF  +  ++ + W+ MI G S H    E +++F++M  A   P+  T
Sbjct: 375 MYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVT 434

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++ VLSAC+H+G V++G  Y + ++KQ  + P V HY+C++ +L +AG + EA + + + 
Sbjct: 435 FVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKST 494

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P       W +LL++C  ++N  L +  A+ +  M+P + G ++LLSN+YA  +RW+ V 
Sbjct: 495 PVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVV 554

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           + RKL+R+  VKKE   SW+EI+          + HP   +IY K+++L+  ++ +GY P
Sbjct: 555 KIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVP 614

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +     HDVED +K+E + +HSEKLA+ +GLM    G PIR++KNLR+C DCHS +K  S
Sbjct: 615 DIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLIS 674

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++  R  IVRD NRFH F +G CSC D+W
Sbjct: 675 KVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 186/350 (53%), Gaps = 3/350 (0%)

Query: 52  GKVCHAKII--GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           GK+ HA +I       ++ +  N LIN Y+KC  I  AR +FD M +R +VSW  ++  Y
Sbjct: 44  GKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGY 103

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             NG   E + LF  M+       +E+  ++++ +C+    V E  Q H +ALK+ +  +
Sbjct: 104 FHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFH 163

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            +V  AL+ +Y++   +  A  V+  +P  +  +++ ++ G ++N    EAL +  R   
Sbjct: 164 QYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVD 223

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             + ++  T  +    C+ L  L  G QVH  + +TG   + F +S+++DMY KCG +++
Sbjct: 224 ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILN 283

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF+ ++ KNVV W  +++ +S++    E +  F +M+  GL PNE T+  +L++C+ 
Sbjct: 284 ARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAG 343

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           I  +  GK      +K+     ++   + +I++  ++G I  A+ + L M
Sbjct: 344 ISALGHGK-LLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEM 392



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L SCA   A   GK+ H +I   G  +  +  N LIN YSK G I  A KVF EM
Sbjct: 333 TFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEM 392

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R  ++W+ +I   + +G  +EA+ +F  ML   + P+   T   VL ACA    V E 
Sbjct: 393 ICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHY-VTFVGVLSACAHLGSVQEG 451

Query: 155 -KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVA 209
              L+    +  ++  V   T ++ +  K G + +A    +S P + + V W ++++
Sbjct: 452 FYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLS 508


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/566 (39%), Positives = 341/566 (60%), Gaps = 15/566 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL ++L SCA  +    G+  H + + +G++ +   SN L+  Y++ G ++  RK+F  M
Sbjct: 137 TLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSM 196

Query: 95  PQRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P+   VSWN+IIG+  ++ R   EAVA F+N LR G+   +  T SSVL A ++      
Sbjct: 197 PEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQK-LNRITFSSVLSAVSSLSFGEL 255

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFV 212
            KQ+H  ALK  +        AL+  Y KCG +    ++F  M ER ++VTW+SM++G++
Sbjct: 256 GKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYI 315

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            NEL  +AL L       G   + F  ++V+ A A +A L +G +VHA   +    S++ 
Sbjct: 316 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 375

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             S+LVDMY+KCG +  A   F+ +  +N   WN+MISG++RH +  E + LF  M+  G
Sbjct: 376 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDG 435

Query: 333 LHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
             P +  T++ VLSACSH G++E+G  +F+ M   + + P + H+SCM D+LGRAG + +
Sbjct: 436 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDK 495

Query: 392 AYDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
             D I  MP      +W ++L +C   N R  EL + AA+ LF +EP+NA N++LL N+Y
Sbjct: 496 LEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 555

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           AA  RWE++ +ARK ++D++VKKE   SWV +K        G ++HP    IY KL++L 
Sbjct: 556 AAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELN 615

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL-CPGVPIRIMKNLRIC 560
            +M+  GY P+T   L+D+E   K+E+L +HSEKLA+ F L       +PIRIMKNLR+C
Sbjct: 616 RKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVC 675

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRF 586
           GDCHS  K+ S+I GR+ I+RD NR+
Sbjct: 676 GDCHSAFKYISKIEGRQIILRDSNRY 701



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 203/402 (50%), Gaps = 8/402 (1%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTL-TSNILINFYSKCGLISGARKVFDEMPQRCIV 100
           S A +    +G+  H  +I  GL +  +   N L+N Y+KCG I+ AR+VF  M ++  V
Sbjct: 42  SLAEQVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSV 101

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SWN++I     NG   EAV  + +M R    P S FT+ S L +CA+ +     +Q+H  
Sbjct: 102 SWNSMITGLDQNGCFIEAVERYQSMRRHEILPGS-FTLISSLSSCASLKWAKLGQQIHGE 160

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL-YEE 219
           +LK  +D NV V  AL+ +YA+ G +++  ++F SMPE ++V+W+S++     +E    E
Sbjct: 161 SLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPE 220

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+  F  A   G + N+ T SSV+ A + L+    GKQ+H +  K          ++L+ 
Sbjct: 221 AVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIA 280

Query: 280 MYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            Y KCG +     +FS + E ++ V WN+MISG+  +    + + L   M Q G   +  
Sbjct: 281 CYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSF 340

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
            Y +VLSA + +  +E+G       V+   +  +V   S ++D+  + G +  A      
Sbjct: 341 MYATVLSAFASVATLERGMEVHACSVRA-CLESDVVVGSALVDMYSKCGRLDYALRFFNT 399

Query: 399 MPFDATASMWGSLLASCRNYRNLE--LAEIAAKQLFGMEPDN 438
           MP   + S W S+++    +   E  L   A  +L G  P +
Sbjct: 400 MPVRNSYS-WNSMISGYARHGQGEEALKLFANMKLDGQTPPD 440


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/616 (35%), Positives = 347/616 (56%), Gaps = 43/616 (6%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
             A     ST    +Q C++ RA   GK  H  I   G     +  N ++  Y+KCG + 
Sbjct: 80  GRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLV 139

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG---------------- 129
            ARKVFDEMP+R + SWN ++  Y   G  +EA  LF  M                    
Sbjct: 140 DARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQ 199

Query: 130 ------------KTPYSE---FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
                       + P S+   FTVSS + A AA + +   K++H   ++A +D +  + +
Sbjct: 200 PEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWS 259

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL-- 232
           +L+D+Y KCG I +A  +F+ + +++ V+W+SM+  + ++  + E   LF  ++++G   
Sbjct: 260 SLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLF--SELIGSCE 317

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             N++T S V+ ACA L     G+QVH  + + GF    FA+SSL+DMY KCG +  A  
Sbjct: 318 RPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARH 377

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           V  G  + ++V   ++I G++++ +  E +  F+ + ++G  P+  T+++VLSAC+H G+
Sbjct: 378 VVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGL 437

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           VEKG  +F  + ++H++     HY+C++D+L R+G   +   ++  MP   +  +W S+L
Sbjct: 438 VEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVL 497

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
             C  Y N++LAE AA++LF +EP+N   ++ ++NIYAA  +WEE  + RK +++  + K
Sbjct: 498 GGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITK 557

Query: 473 EKSKSWVEIKGKR--------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           +   SW EIK KR        +HP   +I   L +L ++MK+ GY P T   LHDVED +
Sbjct: 558 KPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDEQ 617

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K+E L++HSEKLA+ F ++    G  I++ KNLR C DCHS +KF S+I  R+  +RD  
Sbjct: 618 KEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDST 677

Query: 585 RFHHFTNGSCSCWDFW 600
           RFH F NG CSC D+W
Sbjct: 678 RFHCFENGQCSCRDYW 693



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            +L  EA+ L  RA+    +    T  ++I  C+   AL +GK+VH  +  +GF   +  
Sbjct: 69  QKLLREAVQLLGRAK----KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVI 124

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + ++ MYAKCG +VDA  VF  + E++V  WN M++G++      E   LF++M +   
Sbjct: 125 WNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPER-- 182

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF------HYSCMIDILGRAG 387
             +  ++ ++++        E+    + LM +  N  PN+F        +  I  + R  
Sbjct: 183 --DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGK 240

Query: 388 LIHEAYDLILNMPFDATASMWGSLL 412
            IH     I+    D+   +W SL+
Sbjct: 241 EIHGH---IVRAGLDSDEVLWSSLM 262


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 342/607 (56%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----------------------------- 65
           T    L+SCA+ +    G+  H +++ +G +                             
Sbjct: 66  TFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRS 125

Query: 66  --NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
              D ++   LI  Y+  G I  A+K+FDE+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 126 SHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFE 185

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T  +VL ACA    +   +Q+H +      D N+ +  AL+D+Y+KC
Sbjct: 186 EMMKMNVRP-DESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKC 244

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +F+ +  ++ ++W++++ G+    LY+EAL+LF+     G   N  T+ SV+
Sbjct: 245 GEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVL 304

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A+ VF+ +  K+
Sbjct: 305 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 364

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     LF +M++ G+ P++ T++ +LSACSH GM++ G+  F 
Sbjct: 365 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFR 424

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M + + + P + HY CMID+LG +GL  EA ++I  M  +    +W SLL +C+ + N+
Sbjct: 425 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 484

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ELAE  A+ L  +EP+N  +++LLSNIYA+  RWE+VAR R L+    +KK    S +E+
Sbjct: 485 ELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEV 544

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HP+  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HHS
Sbjct: 545 DSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 604

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   PG  + I+KNLR+C +CH   K  S+I  RE + RD  RFHHF +G 
Sbjct: 605 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGV 664

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 665 CSCNDYW 671



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 196/386 (50%), Gaps = 36/386 (9%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  VF+ + +   + WNT+I  +  +     ++ L++ M+  G  P S +T   +L +CA
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNS-YTFPFLLKSCA 75

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDV--------------------------- 179
             +   E +Q+H   LK   D +++V T+L+ +                           
Sbjct: 76  KSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTA 135

Query: 180 ----YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
               YA  G I  A ++F+ +P ++ V+W++M++G+ +   Y+EAL LF     + +  +
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPD 195

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           + T  +V+ ACA   ++  G+QVH+ +   GF SN+   ++L+D+Y+KCG V  A  +F 
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           G+  K+V+ WNT+I G++      E ++LF++M ++G  PN+ T +SVL AC+H+G ++ 
Sbjct: 256 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDI 315

Query: 356 GKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-- 412
           G+     + K+   + N     + +ID+  + G I  A+  + N     + S W +++  
Sbjct: 316 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ-VFNSMLHKSLSSWNAMIFG 374

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDN 438
            +     +      +  +  G+EPD+
Sbjct: 375 FAMHGRADASFDLFSRMRKIGIEPDD 400


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 333/578 (57%), Gaps = 52/578 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+S A       G+  H  ++ +GL  D+     L++ Y K G +    ++FDE 
Sbjct: 140 TLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDES 199

Query: 95  PQR----CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           PQR     I+ WN +I      G   +A +LF                            
Sbjct: 200 PQRNKAESILLWNVLINGCCKVGDLSKAASLF---------------------------- 231

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                       +A  +RN     +L++ + + G +  A  +F  MPE+N V+W++M+ G
Sbjct: 232 ------------EAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMING 279

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           F QN  +E+AL +F R    G+  N  T+ S + AC  + AL  G+++H  L   GF  N
Sbjct: 280 FSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLN 339

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++LVDMYAKCG +  A  VF   + K+++ W+ MI G++ H    + +  F KM+ 
Sbjct: 340 RGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKS 399

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           AG++P+E  ++++L+ACSH G V++G ++F+ M   +++ P + HY+ ++D+LGRAG + 
Sbjct: 400 AGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLD 459

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA   I +MP +    +WG+L  +CR ++N+E+AE+ A++L  +EP + G+++ LSN+YA
Sbjct: 460 EALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYA 519

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
           A  RWE+V R R L+++  V+K+   S++E++G+ +        H R  EI  KLE++  
Sbjct: 520 AVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITA 579

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
             K+ GY PET   LH++E+  K++ L  HSEKLAL FGL+   PG  IRI+KNLR+CGD
Sbjct: 580 SAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGD 639

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CHS MK+AS+++ RE I+RD+ RFHHF +G+CSC D+W
Sbjct: 640 CHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 121/289 (41%), Gaps = 22/289 (7%)

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           A   + +  Q+H       +  N  V T L+        +  A  +F      N   +++
Sbjct: 49  ASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNA 108

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           ++ G  +N  +E ++  F     L +  ++ T+  V+ + A L  +  G+ +H  + K G
Sbjct: 109 LIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLG 168

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN----VVLWNTMISGFSRHARSVEVM 322
              + F   SLVDMY K G +     +F    ++N    ++LWN +I+G  +     +  
Sbjct: 169 LEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAA 228

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE M +     N  ++ S+++     G +++ +  F  M ++     NV  ++ MI+ 
Sbjct: 229 SLFEAMPER----NAGSWNSLINGFVRNGDLDRARELFVQMPEK-----NVVSWTTMING 279

Query: 383 LGRAGLIHEAYDLILNM------PFDATASMWGSLLASCRNYRNLELAE 425
             + G   +A  +   M      P D T     S L +C     L++ E
Sbjct: 280 FSQNGDHEKALSMFWRMLEEGVRPNDLTVV---SALLACTKIGALQVGE 325


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/589 (39%), Positives = 344/589 (58%), Gaps = 43/589 (7%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGS 108
           RG   H  ++  G    T   N +++ YS C  + GA +VF+ +P  QR +VSWN++I  
Sbjct: 183 RGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISG 242

Query: 109 YTTNGREQEAVALFINMLREGKTPY--SEFTVSSVLCACAAKRDVFECKQLHVF------ 160
           +T NG  + A+  F +M+ EG +    +  TV ++L +CA    V     +H +      
Sbjct: 243 FTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHS 302

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           +L  A D  V V TALLD++A+CG ++ A  +F+ +  +N V WS+M+AG+ Q    EEA
Sbjct: 303 SLLVAKD--VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEA 360

Query: 221 LILFRR----AQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           L LFR+      ++G+E   N  T+ SVI AC+ L A      +H     TG   +   A
Sbjct: 361 LRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIA 420

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           S+L+DM AKCG +     VFS ++E  + VV W++MI     H      + LF +M+  G
Sbjct: 421 SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGG 480

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             PNE TYISVLSACSH G+VE+GKS F+ M K + + P   HY+C++D+LGRAG + EA
Sbjct: 481 YEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEA 540

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           +++ILNMP  A  ++WGSLLA+C  + N +L EI  K++  ++ ++ G+H+LL+N+Y   
Sbjct: 541 HNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDA 600

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            RW++V R R  +R S ++K   +S++EI  +        R+HP    IY +L+ L E +
Sbjct: 601 GRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERV 660

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLI---HHSEKLALTFGLM-------CLCP---GVPI 551
           +K   K  TE  L +VED     L++   +HSE+LA+ FGL+       C C      PI
Sbjct: 661 RKAA-KYVTETGL-NVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPI 718

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RI KNLR+C DCH++ K  S++  RE IVRD +RFHHF +G CSC D+W
Sbjct: 719 RITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 204/438 (46%), Gaps = 42/438 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L++CA  R  +     HA +  +GL  D  ++  L++ Y KCG    A +VFDEM
Sbjct: 54  TFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEM 113

Query: 95  PQRC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE------FTVSSVLCACA 146
           P+    +VSW  +I +Y++NG   EA   F  M        SE       ++ +++ ACA
Sbjct: 114 PEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA 173

Query: 147 ---AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNE 201
                  +     +H   +K     +  +G +++ +Y+ C  +  A RVF  +P  +R+ 
Sbjct: 174 VGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDV 233

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLG---LEYNQFTISSVICACAGLAALIQGKQV 258
           V+W+S+++GF  N   E AL  F      G   +E N+ T+ +++ +CA L  +     V
Sbjct: 234 VSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293

Query: 259 HAVLCKTG----FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           H  +           ++   ++L+DM+A+CG +  A  +F G+E KNVV W+ MI+G+ +
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353

Query: 315 HARSVEVMILFEKMQQAG------LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
            +   E + LF +M   G      + PN  T +SV++ACS +G           M+ ++ 
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSAS-----MIHKYA 408

Query: 369 VLPNVFH----YSCMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLAS----CRNYR 419
           V   +       S +ID+  + G I     +   M     T   W S++ +        R
Sbjct: 409 VATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKR 468

Query: 420 NLELAEIAAKQLFGMEPD 437
            LEL   +  +  G EP+
Sbjct: 469 ALEL--FSEMRTGGYEPN 484



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 25/316 (7%)

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           WN++I    T    Q A+  F  M +    P + FT  ++L ACAA R +    Q+H + 
Sbjct: 21  WNSLIAKNATQ-NPQTALTFFTRM-QAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYL 78

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER--NEVTWSSMVAGFVQNELYEE 219
            +  +  + F   AL+D Y KCG    A++VF+ MPE   + V+W+++++ +  N   +E
Sbjct: 79  TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDE 138

Query: 220 ALILFRRAQVL----GLE---YNQFTISSVICACA---GLAALIQGKQVHAVLCKTGFGS 269
           A   F R + +    G E    +  ++ +++ ACA   G   L +G  VH ++ K GFG 
Sbjct: 139 AFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGV 198

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSG--IEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
           +    +S+V MY+ C  V  A+ VF+G  IE+++VV WN++ISGF+ +  +   +  FE 
Sbjct: 199 STHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFED 258

Query: 328 MQQAG---LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN---VLPNVFHYSCMID 381
           M   G   + PN  T I++L +C+ +G VE      + +  +H+   V  +V   + ++D
Sbjct: 259 MVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLD 318

Query: 382 ILGRAG---LIHEAYD 394
           +  R G   L  E +D
Sbjct: 319 MHARCGNLALAREIFD 334



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 195 SMPERNEVTWSSMVA-GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           S+  ++   W+S++A    QN   + AL  F R Q   +  N FT  +++ ACA L  L+
Sbjct: 12  SISHKDTFHWNSLIAKNATQNP--QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK--NVVLWNTMISG 311
              QVHA L + G  ++ F+A++LVD Y KCG    A  VF  + E   +VV W  +IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 312 FSRHARSVEVMILFEKMQ 329
           +S +    E    F +M+
Sbjct: 130 YSSNGCVDEAFKAFGRMR 147


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 330/579 (56%), Gaps = 15/579 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMG---LNNDTLTSNILINFYSKCGLISGARKV 90
           S+L + L  C     P   K  HA +   G   L      S +L  +    G +S A   
Sbjct: 3   SSLDSFLSKCTTLSLP-HTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILT 61

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F ++       WN II  +  +     A A + +M+ + +      T S VL ACA    
Sbjct: 62  FSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRK-VDALTCSFVLKACARVLA 120

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
             E  Q+H   ++     +  +GT LLDVYAK G I  A +VF+ M +R+  +W+++++G
Sbjct: 121 RLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISG 180

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           F Q     EAL LF+R ++ G + N+ ++   + ACA L    +G+++H  +    F  N
Sbjct: 181 FAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMN 240

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
               + ++DMYAKCG V  AY VF  +   K++V WNTMI  F+ H    + + LFEKM 
Sbjct: 241 AQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMD 300

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           Q+G+ P++ +Y++VL AC+H G+VE+G   F+ M +   V PNV HY  ++D+LGRAG +
Sbjct: 301 QSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRL 359

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
           HEAYD++ +MP      +W +LL + R +RN+E+AE  +++L  M  ++ G+ +LLSN+Y
Sbjct: 360 HEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVY 419

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLV 501
           AA  RW +V R R+ +++ +VKK    S++E  G         ++H    EIY+KL+++ 
Sbjct: 420 AARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIR 479

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
             +K+ GY  ET   LHD+ +  K+ +L HHSEKLA+ FGL+    G PI+++KNLRICG
Sbjct: 480 FRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICG 539

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH  +K  S+I  RE IVRD  RFH F  G CSC D+W
Sbjct: 540 DCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 334/576 (57%), Gaps = 13/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE- 93
           T    L+SCA    P+ G   H +I  +G   +      LI+ Y K  L+  ARKVF+E 
Sbjct: 42  TFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEEN 101

Query: 94  -MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
              ++  V +N ++  Y +N +  +AV LF  M  EG  P +  T+  ++ AC +  ++ 
Sbjct: 102 FHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEG-VPVNSVTLLGLIPACVSPINLE 160

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
               LH   LK   D +V V    + +Y KCG ++ A ++F+ MP +  ++W++MV+G+ 
Sbjct: 161 LGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYA 220

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN L    L L+R   + G+  +  T+  V+ +CA L A   G +V   +  +GF SN F
Sbjct: 221 QNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPF 280

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L++MYA+CG +  A  VF G+ E+ +V W  +I G+  H      + LF++M ++G
Sbjct: 281 LNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG 340

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P+   ++ VLSACSH G+ ++G  YF +M + + + P   HYSCM+D+LGRAG + EA
Sbjct: 341 IEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEA 400

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
             LI +MP     ++WG+LL +C+ ++N+ELAE+A +++  +EP+N G ++LLSNIY+  
Sbjct: 401 QTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNA 460

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
              + V R R ++++ ++KK+   S+VE+KG+        RNH +  EIY  LE+L   +
Sbjct: 461 NNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAII 520

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
            +   KPE ++     +D   +  +  HSEKLA+ FGL+    G  + I+KNLRIC DCH
Sbjct: 521 MQEFGKPEKDNREESNKDGFTRVGV--HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCH 578

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            F K  S+I  R+  VRD  RFHHF NGSCSC D+W
Sbjct: 579 LFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 168/342 (49%), Gaps = 7/342 (2%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             WNT +       +  +A++L+  MLR G  P + FT    L +CAA        Q H 
Sbjct: 6   TPWNTQLRELAKRCQFLQALSLYPQMLRHGDRP-NAFTFPFALKSCAALSLPILGSQFHG 64

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELY 217
              K       FV T L+ +Y K  L+ +A +VFE      ++T  ++++V+G+V N   
Sbjct: 65  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 124

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            +A++LFR+    G+  N  T+  +I AC     L  G  +H    K GF S++   +  
Sbjct: 125 SDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCF 184

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY KCG V  A  +F  +  K ++ WN M+SG++++  +  V+ L+  M   G+HP+ 
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 244

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T + VLS+C+++G    G    +  ++      N F  + +I++  R G + +A  +  
Sbjct: 245 VTLVGVLSSCANLGAQSVGHE-VEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFD 303

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPD 437
            MP + T   W +++     + + E+A    K++   G+EPD
Sbjct: 304 GMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPD 344


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 330/607 (54%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN----------------------------- 65
           T     +SC + +A   GK  HA  + + L+                             
Sbjct: 133 TFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKS 192

Query: 66  --NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
              D ++   LI  Y   G +  AR++FDE+P + +VSWN +I  Y  +GR +EA+  F 
Sbjct: 193 SLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M      P ++ T+  VL AC   R     K +  +        N+ +  AL+D+Y KC
Sbjct: 253 EMQEANVLP-NKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKC 311

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G    A  +F+ + E++ ++W++M+ G+    LYEEAL LF       ++ N  T   ++
Sbjct: 312 GETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGIL 371

Query: 244 CACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
            ACA L AL  GK VHA + K     SN    +SL+DMYAKCGC+  A  VF  +  +N+
Sbjct: 372 HACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIGMVEKGKSYFD 361
             WN M+SGF+ H  +   + LF +M   GL  P++ T++ VLSAC+  G+V+ G  YF 
Sbjct: 432 ASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFR 491

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M++ + + P + HY CMID+L RA    EA  L+ NM  +   ++WGSLL++C+ +  +
Sbjct: 492 SMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRV 551

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           E  E  A++LF +EP+NAG  +LLSNIYA   RW++VAR R  + D  +KK    + +EI
Sbjct: 552 EFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEI 611

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HP    IY  L ++ + +++ G+ P T   L+D+++  K+  L  HS
Sbjct: 612 DGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHS 671

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA++FGL+   PG  IRI+KNLR+CG+CHS  K  S+I  RE I RD NRFHHF +G 
Sbjct: 672 EKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGF 731

Query: 594 CSCWDFW 600
           CSC D W
Sbjct: 732 CSCNDCW 738



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 211/427 (49%), Gaps = 45/427 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQR---CIVSWNTIIG 107
           K  H+ II  GLNN     + LI+F   S  G +S A  +F+E  Q     +  WN++I 
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIR 104

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
            Y+ +     ++ LF  ML  G  P S  T   +  +C   +   E KQLH  ALK A+ 
Sbjct: 105 GYSLSSSPLSSLHLFSRMLYYGVQPNSH-TFPFLFKSCTKAKATHEGKQLHAHALKLALH 163

Query: 168 RNVFVGTALLDVYAKCG-------------------------------LISDASRVFESM 196
            N  V T+++ +YA  G                                + DA R+F+ +
Sbjct: 164 FNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEI 223

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
           P ++ V+W++M++G+VQ+  +EEA++ F   Q   +  N+ T+  V+ AC    +   GK
Sbjct: 224 PVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGK 283

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
            + + +   GFGSN+   ++L+DMY KCG    A  +F GIEEK+V+ WNTMI G+S  +
Sbjct: 284 WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLS 343

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
              E + LFE M ++ + PN+ T++ +L AC+ +G ++ GK     + K      N   +
Sbjct: 344 LYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLW 403

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA-----EIAAKQL 431
           + +ID+  + G I  A  +  +M     AS W ++L+    + + E A     E+  K L
Sbjct: 404 TSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WNAMLSGFAMHGHAERALALFSEMVNKGL 462

Query: 432 FGMEPDN 438
           F   PD+
Sbjct: 463 F--RPDD 467



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 5/288 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST+   L +C   R+   GK   + +   G  ++   +N LI+ Y KCG    AR++FD 
Sbjct: 264 STMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDG 323

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ ++SWNT+IG Y+     +EA+ALF  MLR    P ++ T   +L ACA    +  
Sbjct: 324 IEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKP-NDVTFLGILHACACLGALDL 382

Query: 154 CKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
            K +H +  K   +  N  + T+L+D+YAKCG I  A RVF SM  RN  +W++M++GF 
Sbjct: 383 GKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFA 442

Query: 213 QNELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLAALIQGKQ-VHAVLCKTGFGSN 270
            +   E AL LF      GL   +  T   V+ AC     +  G Q   +++   G    
Sbjct: 443 MHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPK 502

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHAR 317
           +     ++D+ A+     +A  +   +E E +  +W +++S    H R
Sbjct: 503 LQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGR 550



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 133/313 (42%), Gaps = 40/313 (12%)

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA- 181
           ++ L     PY        L      +++   KQ+H   +K  ++  VFV + L+   A 
Sbjct: 13  LHFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAV 72

Query: 182 -KCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
              G +S A  +FE   +    N   W+S++ G+  +     +L LF R    G++ N  
Sbjct: 73  SPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSH 132

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC------------- 284
           T   +  +C    A  +GKQ+HA   K     N    +S++ MYA               
Sbjct: 133 TFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKS 192

Query: 285 ------------------GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
                             GC+ DA  +F  I  K+VV WN MISG+ +  R  E ++ F 
Sbjct: 193 SLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL--- 383
           +MQ+A + PN+ T + VLSAC H    E GK +    V+ +    N+   + +ID+    
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGHTRSGELGK-WIGSWVRDNGFGSNLQLTNALIDMYCKC 311

Query: 384 GRAGLIHEAYDLI 396
           G   +  E +D I
Sbjct: 312 GETDIARELFDGI 324


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/575 (35%), Positives = 337/575 (58%), Gaps = 10/575 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    L++C R      G+    + +  G  +D      ++N Y+KCG +  A +VFD+
Sbjct: 106 STYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDK 165

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R +V W T+I     NG+ +EAV ++  M ++ +       +  ++ AC        
Sbjct: 166 MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKK-RVEGDGVVMLGLIQACTTLGHSKM 224

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H + ++  +  +V V T+L+D+YAK G +  AS VF  M  +N ++WS++++GF Q
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQ 284

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     AL L    Q  G + +  ++ SV+ AC+ +  L  GK VH  + +     +  +
Sbjct: 285 NGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVS 343

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           +++++DMY+KCG +  A  VF  I  ++ + WN +I+ +  H    E + LF +M++  +
Sbjct: 344 STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNV 403

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+ S+LSA SH G+VEKG+ +F +MV ++ + P+  HY+CM+D+L RAG + EA 
Sbjct: 404 KPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQ 463

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           +LI +M  +   ++W +LL+ C N+    + E+AAK++  + PD+ G + L+SN +A  R
Sbjct: 464 ELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATAR 523

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RW+EVA  RK+++ + +KK    S +E+ GK        ++H +  EI   L KL  EMK
Sbjct: 524 RWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMK 583

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY P+TE  LH++E+  K+ +L +HSE+LA+ FGL+   PG  + I KNLR+CGDCH 
Sbjct: 584 AMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHE 643

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             KF S+I  RE +VRD+ RFHHF +G CSC D+W
Sbjct: 644 ATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 195/371 (52%), Gaps = 15/371 (4%)

Query: 49  PVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           P   K+ HA +I  G+     ++  LI  Y++ G I  AR+VFD+ PQ  + +WN +I +
Sbjct: 21  PTIAKI-HALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIA 79

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           Y+  G   EA++L+  M  EG  P S  T + VL AC    D+   ++    A+      
Sbjct: 80  YSRRGAMFEALSLYHRMASEGVRPDSS-TYTVVLKACTRSLDLRSGEETWRQAVDQGYGD 138

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           +VFVG A+L++YAKCG + +A RVF+ M  R+ V W++M+ G  QN    EA+ ++R+  
Sbjct: 139 DVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMH 198

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
              +E +   +  +I AC  L     G  +H  + +     ++   +SLVDMYAK G + 
Sbjct: 199 KKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLE 258

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  VF  +  KNV+ W+ +ISGF+++  +   + L   MQ  G  P+  + +SVL ACS
Sbjct: 259 LASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACS 318

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSC-----MIDILGRAGLIHEAYDLILNMPFDA 403
            +G ++ GKS    +V++        H+ C     +ID+  + G +  A  +   + F  
Sbjct: 319 QVGFLKLGKSVHGYIVRR-------LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRD 371

Query: 404 TASMWGSLLAS 414
           + S W +++AS
Sbjct: 372 SIS-WNAIIAS 381



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 136/265 (51%), Gaps = 4/265 (1%)

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+  YA+ G I  A +VF+  P+     W++M+  + +     EAL L+ R    G+  +
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T + V+ AC     L  G++        G+G ++F  ++++++YAKCG + +A  VF 
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  +++V W TMI+G +++ ++ E + ++ +M +  +  +    + ++ AC+ +G  + 
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA-- 413
           G S    M+++ +++ +V   + ++D+  + G +  A  +   M +    S W +L++  
Sbjct: 225 GLSIHGYMIRK-DIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVIS-WSALISGF 282

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDN 438
           +   +    L  +   Q FG +PD+
Sbjct: 283 AQNGFAGNALQLVVDMQSFGYKPDS 307


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 335/558 (60%), Gaps = 11/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA  I  G++++    N LI+ Y KC  +      F+ MP++ ++SW TII  Y  
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQ 430

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    +A+ L   +  E K       + S+L AC+  +     K++H + LK  +  ++ 
Sbjct: 431 NECHLDALNLLRKVQLE-KMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADIL 488

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           +  A+++VY +  L+  A  VFES+  ++ V+W+SM+   V N L  EAL LF       
Sbjct: 489 IQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETN 548

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +E +  T+ SV+ A A L++L +GK++H  L + GF      A+SLVDMYA+CG + +A 
Sbjct: 549 IEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENAR 608

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F+ +++++++LW +MI+    H    + + LF KM    + P+  T++++L ACSH G
Sbjct: 609 NIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSG 668

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +V +GK +F++M  ++ + P   HY+C++D+L R+  + EAY  + NMP + +A +W +L
Sbjct: 669 LVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCAL 728

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           L +CR + N +L E+AAK+L  +  +N+GN++L+SN +AA+ RW +V   R +++ +++K
Sbjct: 729 LGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLK 788

Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK-KLGYKPETEHDLHDVED 522
           K+   SW+E++ K        ++HP+   IY KL +  + +K K GY+ +T+   HDV +
Sbjct: 789 KKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCE 848

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K ++L  HSE+LAL +GL+    G  +RI KNLRIC DCH+F K AS I+ R  +VRD
Sbjct: 849 EEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRD 908

Query: 583 LNRFHHFTNGSCSCWDFW 600
            +RFHHF  G CSC DFW
Sbjct: 909 ASRFHHFERGLCSCGDFW 926



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 214/421 (50%), Gaps = 11/421 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE- 93
           T    L++C   +    G   H   +  G        N LI  Y+KCG + GAR +FD  
Sbjct: 150 TFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSG 209

Query: 94  -MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
            M +   VSWN+II ++   G   EA++LF  M +E     + +T  S L AC     + 
Sbjct: 210 LMEKDDPVSWNSIISAHVGEGESLEALSLFRRM-QEVGVESNTYTFVSALQACEGPTFIK 268

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             + +H   LK+    +V+V  AL+ +YA CG + DA RVF+SM  ++ V+W+++++G V
Sbjct: 269 IGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMV 328

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN++Y +A+  F+  Q  G + +Q ++ ++I A    A L+ G +VHA   K G  SNM 
Sbjct: 329 QNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMH 388

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +SL+DMY KC CV      F  + EK+++ W T+I+G++++   ++ + L  K+Q   
Sbjct: 389 IGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEK 448

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  +     S+L ACS +   +  K     ++K    L ++   + ++++ G   L+  A
Sbjct: 449 MDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK--GGLADILIQNAIVNVYGELALVDYA 506

Query: 393 YDLILNMPFDATASMWGSLLASC-RNYRNLELAEIAAKQL-FGMEPDNAGNHLLLSNIYA 450
             +  ++      S W S++  C  N   +E  E+    +   +EPD      L+S +YA
Sbjct: 507 RHVFESINSKDIVS-WTSMITCCVHNGLAIEALELFNSLIETNIEPDLI---TLVSVLYA 562

Query: 451 A 451
           A
Sbjct: 563 A 563



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 189/349 (54%), Gaps = 5/349 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI-LINFYSKCGLISGARKVFDEMPQRC 98
           L+ CA  +A  +G+  HA  +      D++  +   ++ Y KCG    A KVFD+M +R 
Sbjct: 53  LELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERT 112

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           I +WN +IG+  + GR  EA+ L+  M   G      FT   VL AC A ++     ++H
Sbjct: 113 IFTWNAMIGACVSAGRYVEAIELYKEMRVLG-VSLDAFTFPCVLKACGAFKERRLGCEIH 171

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES--MPERNEVTWSSMVAGFVQNEL 216
             A+K      VFV  AL+ +YAKCG +  A  +F+S  M + + V+W+S+++  V    
Sbjct: 172 GVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGE 231

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
             EAL LFRR Q +G+E N +T  S + AC G   +  G+ +HAV+ K+   ++++ +++
Sbjct: 232 SLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNA 291

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+ MYA CG + DA  VF  +  K+ V WNT++SG  ++    + +  F+ MQ +G  P+
Sbjct: 292 LIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPD 351

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
           + + +++++A      +  G       +K H +  N+   + +ID+ G+
Sbjct: 352 QVSVLNMIAASGRSANLLAGMEVHAYAIK-HGIDSNMHIGNSLIDMYGK 399



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 150/279 (53%), Gaps = 7/279 (2%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAA--MDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           S  L  CA+ + + + +QLH   LK    +D +VF+ T  + +Y KCG   DA +VF+ M
Sbjct: 50  SQALELCASHKALPQGQQLHAHFLKTQNYLD-SVFLDTKFVHMYGKCGSFYDAVKVFDKM 108

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
            ER   TW++M+   V    Y EA+ L++  +VLG+  + FT   V+ AC        G 
Sbjct: 109 SERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGC 168

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF-SGIEEK-NVVLWNTMISGFSR 314
           ++H V  K G+G  +F  ++L+ MYAKCG +  A  +F SG+ EK + V WN++IS    
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVG 228

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
              S+E + LF +MQ+ G+  N  T++S L AC     ++ G+    +++K  N   +V+
Sbjct: 229 EGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKS-NHFTDVY 287

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
             + +I +    G + +A  +  +M F    S W +LL+
Sbjct: 288 VSNALIAMYANCGQMEDAERVFKSMLFKDCVS-WNTLLS 325



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           Q   S  +  CA   AL QG+Q+HA   KT  +  ++F  +  V MY KCG   DA  VF
Sbjct: 46  QQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVF 105

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             + E+ +  WN MI       R VE + L+++M+  G+  +  T+  VL AC
Sbjct: 106 DKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L TL + L + A   +  +GK  H  +I  G   + L +N L++ Y++CG +  AR +F
Sbjct: 552 DLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIF 611

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + + QR ++ W ++I +   +G  ++A+ LF  M  E   P    T  ++L AC+    V
Sbjct: 612 NYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLP-DHITFLALLYACSHSGLV 670

Query: 152 FECKQLHVFALKAAMDRNVFVG--TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
            E KQ H   +K       +      L+D+ A+   + +A     +MP E +   W +++
Sbjct: 671 VEGKQ-HFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALL 729

Query: 209 AG 210
             
Sbjct: 730 GA 731


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/533 (37%), Positives = 320/533 (60%), Gaps = 9/533 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C   R    G+  H+  +  G  +D   S +LI+ YSK G +  AR+V + +
Sbjct: 347 TYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +VSW ++I  Y  +   ++A+A F  M + G  P     ++S +  CA    + + 
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP-DNIGLASAISGCAGINAMRQG 465

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H     +    +V +  AL+++YA+CG I +A   FE +  ++E+TW+ +V+GF Q+
Sbjct: 466 LQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQS 525

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L+EEAL +F R    G+++N FT  S + A A LA + QGKQ+HA + KTG        
Sbjct: 526 GLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG 585

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y KCG   DA   FS + E+N V WNT+I+  S+H R +E + LF++M++ G+ 
Sbjct: 586 NALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIK 645

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VL+ACSH+G+VE+G SYF  M  ++ + P   HY+C+IDI GRAG +  A  
Sbjct: 646 PNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKK 705

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP  A A +W +LL++C+ ++N+E+ E AAK L  +EP ++ +++LLSN YA   +
Sbjct: 706 FIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEK 765

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W    + RK++RD  V+KE  +SW+E+K        G R HP   +IY+ L  + + + K
Sbjct: 766 WANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAK 825

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           +GYK E  H  HD E   +    + HSEKLA+TFGLM L P +P+R++KNLR+
Sbjct: 826 VGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 203/391 (51%), Gaps = 13/391 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HAK +  GL    +  N+LI+ YSK GL+  AR+VF+E+  R  VSW  ++  Y  NG  
Sbjct: 65  HAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLG 124

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ L+  M R G  P + + +SSVL +C       + + +H    K      +FVG A
Sbjct: 125 EEALGLYRQMHRAGVVP-TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           ++ +Y +CG    A RVF  MP R+ VT++++++G  Q    E AL +F   Q  GL  +
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             TISS++ ACA L  L +G Q+H+ L K G  S+     SL+D+Y KCG V  A  +F+
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
             +  NVVLWN M+  F +     +   LF +MQ AG+ PN+ TY  +L  C+    ++ 
Sbjct: 304 SSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDL 363

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS- 414
           G+    L VK      +++    +ID+  + G + +A   +L M  +     W S++A  
Sbjct: 364 GEQIHSLSVKT-GFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAGY 421

Query: 415 -----CRNYRNLELAEIAAKQLFGMEPDNAG 440
                C++     LA     Q  G+ PDN G
Sbjct: 422 VQHECCKD----ALAAFKEMQKCGIWPDNIG 448



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 223/409 (54%), Gaps = 11/409 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA      +G   H+ +   G+++D +    L++ Y KCG +  A  +F+  
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN ++ ++       ++  LF  M   G  P ++FT   +L  C   R++   
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP-NQFTYPCILRTCTCTREIDLG 364

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  ++K   + +++V   L+D+Y+K G +  A RV E + E++ V+W+SM+AG+VQ+
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  ++AL  F+  Q  G+  +   ++S I  CAG+ A+ QG Q+HA +  +G+  ++   
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIW 484

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV++YA+CG + +A+  F  IE K+ + WN ++SGF++     E + +F +M Q+G+ 
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHEAY 393
            N  T++S LSA +++  +++GK     ++K  H+    V   + +I + G+ G   +A 
Sbjct: 545 HNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG--NALISLYGKCGSFEDAK 602

Query: 394 DLILNMPFDATASMWGSLLASC----RNYRNLELAEIAAKQLFGMEPDN 438
                M      S W +++ SC    R    L+L +   K+  G++P++
Sbjct: 603 MEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKE--GIKPND 648



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 193/360 (53%), Gaps = 4/360 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + L SC +     +G++ HA+    G  ++    N +I  Y +CG    A +VF +M
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R  V++NT+I  +   G  + A+ +F  M   G +P    T+SS+L ACA+  D+ + 
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC-VTISSLLAACASLGDLQKG 263

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            QLH +  KA +  +  +  +LLD+Y KCG +  A  +F S    N V W+ M+  F Q 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               ++  LF + Q  G+  NQFT   ++  C     +  G+Q+H++  KTGF S+M+ +
Sbjct: 324 NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             L+DMY+K G +  A  V   ++EK+VV W +MI+G+ +H    + +  F++MQ+ G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 335 PNEQTYISVLSACSHIGMVEKG-KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
           P+     S +S C+ I  + +G + +  + V  ++   +V  ++ ++++  R G I EA+
Sbjct: 444 PDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS--GDVSIWNALVNLYARCGRIREAF 501



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 163/324 (50%), Gaps = 8/324 (2%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE--GKTPYSEFTVSSVLCACAAKRDV 151
           M +R   S    +  +  +    + ++LF +  R+  G  P      +  L AC      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGP---LDFACALRACRGNGRR 57

Query: 152 FEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           ++   ++H  A+   + +   VG  L+D+Y+K GL+  A RVFE +  R+ V+W +M++G
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN L EEAL L+R+    G+    + +SSV+ +C       QG+ +HA   K GF S 
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F  ++++ +Y +CG    A  VF  +  ++ V +NT+ISG ++       + +FE+MQ 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           +GL P+  T  S+L+AC+ +G ++KG      + K   +  +      ++D+  + G + 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVE 296

Query: 391 EAYDLILNMPFDATASMWGSLLAS 414
            A  +I N        +W  +L +
Sbjct: 297 TAL-VIFNSSDRTNVVLWNLMLVA 319


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/533 (37%), Positives = 320/533 (60%), Gaps = 9/533 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C   R    G+  H+  +  G  +D   S +LI+ YSK G +  AR+V + +
Sbjct: 347 TYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +VSW ++I  Y  +   ++A+A F  M + G  P     ++S +  CA    + + 
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP-DNIGLASAISGCAGINAMRQG 465

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H     +    +V +  AL+++YA+CG I +A   FE +  ++E+TW+ +V+GF Q+
Sbjct: 466 LQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQS 525

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L+EEAL +F R    G+++N FT  S + A A LA + QGKQ+HA + KTG        
Sbjct: 526 GLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG 585

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y KCG   DA   FS + E+N V WNT+I+  S+H R +E + LF++M++ G+ 
Sbjct: 586 NALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIK 645

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VL+ACSH+G+VE+G SYF  M  ++ + P   HY+C+IDI GRAG +  A  
Sbjct: 646 PNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKK 705

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP  A A +W +LL++C+ ++N+E+ E AAK L  +EP ++ +++LLSN YA   +
Sbjct: 706 FIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEK 765

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W    + RK++RD  V+KE  +SW+E+K        G R HP   +IY+ L  + + + K
Sbjct: 766 WANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAK 825

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           +GYK E  H  HD E   +    + HSEKLA+TFGLM L P +P+R++KNLR+
Sbjct: 826 VGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 203/391 (51%), Gaps = 13/391 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HAK +  GL    +  N+LI+ YSK GL+  AR+VF+E+  R  VSW  ++  Y  NG  
Sbjct: 65  HAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLG 124

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ L+  M R G  P + + +SSVL +C       + + +H    K      +FVG A
Sbjct: 125 EEALGLYRQMHRAGVVP-TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           ++ +Y +CG    A RVF  MP R+ VT++++++G  Q    E AL +F   Q  GL  +
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             TISS++ ACA L  L +G Q+H+ L K G  S+     SL+D+Y KCG V  A  +F+
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
             +  NVVLWN M+  F +     +   LF +MQ AG+ PN+ TY  +L  C+    ++ 
Sbjct: 304 SSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDL 363

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS- 414
           G+    L VK      +++    +ID+  + G + +A   +L M  +     W S++A  
Sbjct: 364 GEQIHSLSVKT-GFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAGY 421

Query: 415 -----CRNYRNLELAEIAAKQLFGMEPDNAG 440
                C++     LA     Q  G+ PDN G
Sbjct: 422 VQHECCKD----ALAAFKEMQKCGIWPDNIG 448



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 223/409 (54%), Gaps = 11/409 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA      +G   H+ +   G+++D +    L++ Y KCG +  A  +F+  
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN ++ ++       ++  LF  M   G  P ++FT   +L  C   R++   
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP-NQFTYPCILRTCTCTREIDLG 364

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  ++K   + +++V   L+D+Y+K G +  A RV E + E++ V+W+SM+AG+VQ+
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  ++AL  F+  Q  G+  +   ++S I  CAG+ A+ QG Q+HA +  +G+  ++   
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIW 484

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV++YA+CG + +A+  F  IE K+ + WN ++SGF++     E + +F +M Q+G+ 
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHEAY 393
            N  T++S LSA +++  +++GK     ++K  H+    V   + +I + G+ G   +A 
Sbjct: 545 HNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG--NALISLYGKCGSFEDAK 602

Query: 394 DLILNMPFDATASMWGSLLASC----RNYRNLELAEIAAKQLFGMEPDN 438
                M      S W +++ SC    R    L+L +   K+  G++P++
Sbjct: 603 MEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKE--GIKPND 648



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 193/360 (53%), Gaps = 4/360 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + L SC +     +G++ HA+    G  ++    N +I  Y +CG    A +VF +M
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R  V++NT+I  +   G  + A+ +F  M   G +P    T+SS+L ACA+  D+ + 
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC-VTISSLLAACASLGDLQKG 263

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            QLH +  KA +  +  +  +LLD+Y KCG +  A  +F S    N V W+ M+  F Q 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               ++  LF + Q  G+  NQFT   ++  C     +  G+Q+H++  KTGF S+M+ +
Sbjct: 324 NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             L+DMY+K G +  A  V   ++EK+VV W +MI+G+ +H    + +  F++MQ+ G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 335 PNEQTYISVLSACSHIGMVEKG-KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
           P+     S +S C+ I  + +G + +  + V  ++   +V  ++ ++++  R G I EA+
Sbjct: 444 PDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS--GDVSIWNALVNLYARCGRIREAF 501



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 163/324 (50%), Gaps = 8/324 (2%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE--GKTPYSEFTVSSVLCACAAKRDV 151
           M +R   S    +  +  +    + ++LF +  R+  G  P      +  L AC      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGP---LDFACALRACRGNGRR 57

Query: 152 FEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           ++   ++H  A+   + +   VG  L+D+Y+K GL+  A RVFE +  R+ V+W +M++G
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN L EEAL L+R+    G+    + +SSV+ +C       QG+ +HA   K GF S 
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F  ++++ +Y +CG    A  VF  +  ++ V +NT+ISG ++       + +FE+MQ 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           +GL P+  T  S+L+AC+ +G ++KG      + K   +  +      ++D+  + G + 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVE 296

Query: 391 EAYDLILNMPFDATASMWGSLLAS 414
            A  +I N        +W  +L +
Sbjct: 297 TAL-VIFNSSDRTNVVLWNLMLVA 319


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/534 (38%), Positives = 319/534 (59%), Gaps = 11/534 (2%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y+KCGL    RK+FDEM  + +V W  +I +Y    + +EA+ LF  M +E        
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            V SV  A     DV     +H +A + ++   + VG ++L ++ KCG    A  VF+ M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
            ER+ ++W+SM++G+ QN    EAL+LF   +    +    T   ++ ACA L     G+
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSR 314
           + H  +  +    +   +++L+DMYAKCG +  A  +F+GI   E+N   WN +ISG+  
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           H    E + LF +MQ+ G+ PN  T+ S+LSACSH G++++G+  F  M K+ +V     
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEM-KRLSVTLEDK 299

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           H++C++D+LGRAGL+ EA+DLI  MP   +  +WG+LL +C+ + N+EL + AA  L  +
Sbjct: 300 HHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQL 359

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRN 486
           EP++ G ++L+SNIYAA+ +W+EV + R+ +++  +KK  + S +E            + 
Sbjct: 360 EPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQE 419

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           +P   E+Y K+E L  EMK  GY P+    LHDVE+  K+ +L +HSEKLA+ FG++ + 
Sbjct: 420 NPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKID 479

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           PG+ IR+ KNLR+C DCHS  K+ S I  R+ IVRD NRFHHF  G+CSC D+W
Sbjct: 480 PGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
             N ++  ++KCG    AR VFD M +R ++SWN+++  YT NG+  EA+ LF  M R+ 
Sbjct: 96  VGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEM-RDS 154

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
               +  T   ++ ACA        ++ H F + + M+ +  +  AL+D+YAKCG +  A
Sbjct: 155 DCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKA 214

Query: 190 SRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
             +F  +P  ERN  +W+ +++G+  +   +EAL LF R Q  G+E N FT +S++ AC+
Sbjct: 215 VDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACS 274

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
               + +G++  A + +          + +VDM  + G + +A+
Sbjct: 275 HAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAF 318



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 20/210 (9%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVR----------------GKVCHAKIIG 61
           +S ++  + N  ATE   L   ++    +  PV                 G+  H  I+ 
Sbjct: 129 NSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVD 188

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAV 119
             +  DT  SN L++ Y+KCG +  A  +F+ +P  +R   SWN +I  Y  +G  +EA+
Sbjct: 189 SRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEAL 248

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
            LF  M  EG  P + FT +S+L AC+    + E ++      + ++         ++D+
Sbjct: 249 ELFSRMQEEGVEP-NHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDM 307

Query: 180 YAKCGLISDASRVFESMPE-RNEVTWSSMV 208
             + GL+ +A  + + MP   ++  W +++
Sbjct: 308 LGRAGLLQEAFDLIKEMPSPPSDGVWGALL 337


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/682 (33%), Positives = 360/682 (52%), Gaps = 114/682 (16%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E +T+   LQ+C +  A    K  H  +   GL++D    N LI+ YSK G +  AR+VF
Sbjct: 233 ETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVF 292

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALF----------------------------- 122
           D M  R   SWN++I SY   G   +A +LF                             
Sbjct: 293 DSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKE 352

Query: 123 --INMLR----EGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
             +N+L+    EG  P S  +++SVL A +    +   K+ H + L+   D +V+VGT+L
Sbjct: 353 EVLNILQRMQGEGFKPNSS-SMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSL 411

Query: 177 LDVYAKC-------------------------------GLISDASRVFESMPER----NE 201
           +D+Y K                                G+  DA R+   M +     + 
Sbjct: 412 IDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL 471

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC----------------- 244
           VTW+ M++G+      +EAL +  + + LGL  N  + +++I                  
Sbjct: 472 VTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQ 531

Query: 245 ------------------ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
                             ACA L+ L +GK++H +  + GF  ++F A++L+DMY+K   
Sbjct: 532 MQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSS 591

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + +A+ VF  I+ K +  WN MI GF+      E + +F +MQ+ G+ P+  T+ ++LSA
Sbjct: 592 LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSA 651

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           C + G++ +G  YFD M+  + ++P + HY CM+D+LGRAG + EA+DLI  MP    A+
Sbjct: 652 CKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDAT 711

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +WG+LL SCR ++NL+ AE AAK LF +EP+N+ N++L+ N+Y+   RWE++   R+L+ 
Sbjct: 712 IWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMG 771

Query: 467 DSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
            + V+  +  SW++I  +        + HP   +IY +L +LV EMKKLGY P+      
Sbjct: 772 AAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQ 831

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           ++++  KQ++L+ H+EKLA+T+GL+ +  G PIR++KN RIC DCHS  K+ S +  RE 
Sbjct: 832 NMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKAREL 891

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
            +RD  RFHHF  G CSC DFW
Sbjct: 892 FLRDGVRFHHFREGKCSCNDFW 913



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 181/388 (46%), Gaps = 47/388 (12%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++C R      G   H  +I  G + D      L+NFY +C  +  A +VF EMP    
Sbjct: 140 LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA 199

Query: 100 VSWNTIIGSYTTNGREQEAVALFINM---LREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           + WN  I     + + Q+ V LF  M     + +T     T+  VL AC     +   KQ
Sbjct: 200 LLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA----TIVRVLQACGKMGALNAAKQ 255

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA-----GF 211
           +H +  +  +D +V +   L+ +Y+K G +  A RVF+SM  RN  +W+SM++     GF
Sbjct: 256 IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGF 315

Query: 212 VQN------EL------------------------YEEALILFRRAQVLGLEYNQFTISS 241
           + +      EL                         EE L + +R Q  G + N  +++S
Sbjct: 316 LNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTS 375

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           V+ A + L  L  GK+ H  + + GF  +++  +SL+DMY K   +  A  VF  ++ +N
Sbjct: 376 VLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRN 435

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN+++SG+S      + + L  +M++ G+ P+  T+  ++S  +  G    GK    
Sbjct: 436 IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGC---GKEALA 492

Query: 362 LM--VKQHNVLPNVFHYSCMIDILGRAG 387
           ++   K   + PNV  ++ +I    +AG
Sbjct: 493 VLHQTKSLGLTPNVVSWTALISGSSQAG 520



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 169/414 (40%), Gaps = 68/414 (16%)

Query: 53  KVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K+ HA++I +    N D    N++ ++       S A   +  +P R  + WN+ +  + 
Sbjct: 50  KMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEEFK 108

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           ++      V      L      +     S  L  C    D++   ++H   +K   D +V
Sbjct: 109 SSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV 168

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           ++  AL++ Y +C  +  A++VF  MP    + W+  +   +Q+E  ++ + LFR+ Q  
Sbjct: 169 YLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFS 228

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            L+    TI  V+ AC  + AL   KQ+H  + + G  S++   + L+ MY+K G +  A
Sbjct: 229 FLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELA 288

Query: 291 YFVFSGIEEKNVVLWNTMISGFSR-----------------------------------H 315
             VF  +E +N   WN+MIS ++                                    H
Sbjct: 289 RRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLH 348

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK------------------ 357
               EV+ + ++MQ  G  PN  +  SVL A S +G +  GK                  
Sbjct: 349 GYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVG 408

Query: 358 -SYFDLMVKQHNVLP-----------NVFHYSCMIDILGRAGLIHEAYDLILNM 399
            S  D+ VK H++             N+F ++ ++      G+  +A  L+  M
Sbjct: 409 TSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 462


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 334/607 (55%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++ +R +    G V H  +I   L++D    N LINFY   G    A +VF  M
Sbjct: 175 TFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNM 234

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P + +VSWN +I ++   G   +A+ LF  M  +   P +  T+ SVL ACA K D+   
Sbjct: 235 PGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKP-NVITMVSVLSACAKKIDLEFG 293

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +  +        ++ +  A+LD+Y KCG I+DA  +F  M E++ V+W++M+ G  + 
Sbjct: 294 RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKL 353

Query: 215 ELYEEALILFR----------RAQVLGLEYN----------------------QFTISSV 242
             Y+EA  +F            A +   E N                      + T+   
Sbjct: 354 GNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICA 413

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           +CA A L A+  G  +H  + K     N   A+SL+DMYAKCG +  A  VF  +E K+V
Sbjct: 414 LCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDV 473

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
            +W+ MI   + + +    + LF  M +A + PN  T+ ++L AC+H G+V +G+  F+ 
Sbjct: 474 YVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQ 533

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M   + ++P + HY C++DI GRAGL+ +A   I  MP   TA++WG+LL +C  + N+E
Sbjct: 534 MEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVE 593

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           LAE+A + L  +EP N G  +LLSNIYA    WE+V+  RKL+RDS+VKKE   S +++ 
Sbjct: 594 LAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVN 653

Query: 483 --------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DVEDSRKQELLIHHS 533
                   G  +HP   +IYSKL+++ E+ K +GYKP+  + L    ED+  ++ L  HS
Sbjct: 654 GIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHS 713

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+      PIRI+KN+RICGDCH+F K  S++  R+ ++RD  RFHHF  G 
Sbjct: 714 EKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGK 773

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 774 CSCLDYW 780



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 189/377 (50%), Gaps = 35/377 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFY--SKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA ++      D  T++ L+  Y  S C  +  A+ VF+++PQ  +  WNT+I  Y 
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           ++    ++  +F++ML       ++FT   +  A +  + +     LH   +KA++  ++
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F+  +L++ Y   G    A RVF +MP ++ V+W++M+  F    L ++AL+LF+  ++ 
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMK 268

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            ++ N  T+ SV+ ACA    L  G+ + + +   GF  ++   ++++DMY KCGC+ DA
Sbjct: 269 DVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDA 328

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM---------------QQAG--- 332
             +F+ + EK++V W TM+ G ++     E   +F+ M               +Q G   
Sbjct: 329 KDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPR 388

Query: 333 --------------LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
                           P+E T I  L A + +G ++ G  +  + +K+H++  N    + 
Sbjct: 389 VALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGH-WIHVYIKKHDINLNCHLATS 447

Query: 379 MIDILGRAGLIHEAYDL 395
           ++D+  + G +++A ++
Sbjct: 448 LLDMYAKCGNLNKAMEV 464



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDASRVFESMPERNEVTWSSM 207
           +  + KQ+H   L+ +   + +  + LL  YA   C  +  A  VF  +P+ N   W+++
Sbjct: 84  NTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTL 143

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           + G+  +    ++ ++F        E+ N+FT   +  A + L  L  G  +H ++ K  
Sbjct: 144 IRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKAS 203

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             S++F  +SL++ Y   G    A+ VF+ +  K+VV WN MI+ F+      + ++LF+
Sbjct: 204 LSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQ 263

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGK---SYFDLM-VKQHNVLPNVFHYSCMIDI 382
           +M+   + PN  T +SVLSAC+    +E G+   SY +     +H +L N      M+D+
Sbjct: 264 EMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNA-----MLDM 318

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             + G I++A DL   M      S W ++L
Sbjct: 319 YVKCGCINDAKDLFNKMSEKDIVS-WTTML 347


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 336/593 (56%), Gaps = 42/593 (7%)

Query: 48  APVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107
           A VRG   HA+I+  GL +       L++ Y+K  L+  A  +FDE P+R I  +++++ 
Sbjct: 20  AAVRG--MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLT 77

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
           + + +   + A+ +   ML         F +SSV    A  R     +QLH   + +  +
Sbjct: 78  AVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYN 137

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR- 226
            +  V ++L+D+Y KCG   D  +VF+SM  +N V W+++V+G+  N   EEAL LFR  
Sbjct: 138 GDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 197

Query: 227 ---------AQVLGLEY----------------------NQFTISSVICACAGLAALIQG 255
                    A + GL                        + F +S VI   A LAA + G
Sbjct: 198 PGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLG 257

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +Q+H    + GF SNM   ++L+DMY+KC  ++ A  VF GI  ++V+ W TM+ G ++H
Sbjct: 258 RQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQH 317

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
            R+ E + L+++M  AG  PNE T++ ++ ACSH G+V+KG+  F+ M  ++ + P + H
Sbjct: 318 GRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQH 377

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           Y+C +D+L R+G + EA +L+  MP++   + WG+LL++C  Y++ E+    + +L  + 
Sbjct: 378 YTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELR 437

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNH 487
           P ++  ++LLSN+YA N +W+ VA+ RK +   E++KE   SW+E          G+   
Sbjct: 438 PKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPL 497

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
               EI   LE++V EM+K GY P+T   +HD+E+S K+  L  HSE+LA+ FGL+   P
Sbjct: 498 DVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPP 557

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G  IR++KNLR+C DCH+ MK  S I  R+ +VRD +RFHHF  G CSC +FW
Sbjct: 558 GSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 162/351 (46%), Gaps = 36/351 (10%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           SA+A   +   + +     AR R+   G+  HA  +    N D +  + L++ Y KCG  
Sbjct: 97  SADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSP 156

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA-------------------------- 118
              RKVFD M  +  V W  ++  Y +NGR +EA                          
Sbjct: 157 DDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTG 216

Query: 119 -----VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
                V LF+ M R+G      F +S V+   A        +QLH   ++     N+ VG
Sbjct: 217 ESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVG 276

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            AL+D+Y+KC  I  A  VFE +  R+ ++W++MV G  Q+   EEAL L+ R  + G +
Sbjct: 277 NALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAK 336

Query: 234 YNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
            N+ T   +I AC+    + +G+Q+  ++  + G    +   +  +D+ ++ G +++A  
Sbjct: 337 PNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEE 396

Query: 293 VFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE-QTYI 341
           + + +  E +   W  ++S  +++  +   + + +K+ +  L P +  TYI
Sbjct: 397 LMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE--LRPKDSSTYI 445


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/580 (35%), Positives = 337/580 (58%), Gaps = 15/580 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  + L++CA   A  +G+  HA+++  GL   +    N +I  Y KCG    A  VF+ 
Sbjct: 363 TYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEA 422

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP++  VSWN +I +   N + Q+A+ LF  M  EG    +EFT+ S+L AC    D+  
Sbjct: 423 MPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRS-NEFTLLSLLEACGGLEDLKL 481

Query: 154 CKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
            +Q+H  A       N   VG +++++YA+CG + DA + F+S+ E+  V WS ++A + 
Sbjct: 482 ARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYA 541

Query: 213 QNE--LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GS 269
           Q++      A   F+  +  G++  + T  S + ACA +A L  G+ +H     +GF  +
Sbjct: 542 QSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVET 601

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   +++++MY KCG   DA  VF  + EK ++ WN++I  ++ +  ++E +   ++M 
Sbjct: 602 SLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEML 661

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
             G  P+  T +S+L   SH G++E+G  +F   ++ H + P+     C++D+L R G +
Sbjct: 662 LQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFL 721

Query: 390 HEAYDLILNMPF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
             A +LIL  P   A    W +LLA+C++Y + +     A+++F +EP ++G+ ++L+N+
Sbjct: 722 DAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANL 781

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKL 500
           YA+  RW + +R RK++    VKKE   SW+E        I G+  HP+I EI   LEKL
Sbjct: 782 YASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKL 841

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
              M++ GY P+T + +HDVE+  K+E+L  HSE+LA+ FGLM   PG  IR++KNLR+C
Sbjct: 842 TLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVC 901

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            DCH+  K  S + GRE +VRD +RFHHF +G CSC DFW
Sbjct: 902 SDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 216/426 (50%), Gaps = 6/426 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +CA       G+  H+ ++G GL ++ + SN L+N Y KC  +  A KVFD M  R +
Sbjct: 65  LDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDV 124

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSW  ++  Y  NG   +A+     M  EG  P ++ T  +++  CA  R +   +++H 
Sbjct: 125 VSWTAMLAVYAQNGCWSQALECLSRMDAEGVKP-NQVTFVTIVDVCAKLRLLDLGRKIHH 183

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +   ++ +  +G AL+ +Y  CG   D   VF  M + + + W++M+AG  QN  YEE
Sbjct: 184 RIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEE 243

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            L++FR+  + G++ N+ T  S++  C  L A+ +G+ + A + ++ F S+   A+SL+ 
Sbjct: 244 GLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLIS 303

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           +Y +CG +  A  +   + +++VV WN M++  +++  + E + L  +M   G   N+ T
Sbjct: 304 LYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVT 363

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           Y+SVL AC+++  + +G+     ++    +   V   + +I + G+ G    A  +   M
Sbjct: 364 YLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAM 423

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA-GNHLLLSNIYAANRRWEEV 458
           P     S    + AS  N +  +  E+      GME +    N   L ++  A    E++
Sbjct: 424 PRKDDVSWNAVINASVGNSKFQDALEL----FHGMELEGLRSNEFTLLSLLEACGGLEDL 479

Query: 459 ARARKL 464
             AR++
Sbjct: 480 KLARQI 485



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 185/347 (53%), Gaps = 4/347 (1%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            Y KC  ++ A  VFD +  + + SW  ++ +Y+ NG  +EA+ LF  M  EG  P  + 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRP-DKV 59

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
                L ACAA  ++   +Q+H   + + +  N+ +  +L+++Y KC  +  A +VF+ M
Sbjct: 60  VFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
             R+ V+W++M+A + QN  + +AL    R    G++ NQ T  +++  CA L  L  G+
Sbjct: 120 LLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGR 179

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           ++H  +   G   +    ++LV MY  CG   D   VFS + + +V+LW TMI+G S++ 
Sbjct: 180 KIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNG 239

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
           +  E +++F KM   G+  NE TY+S++  C ++  V++G+   D  + +     +    
Sbjct: 240 QYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGE-MIDARILESPFCSSTLLA 298

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC-RNYRNLE 422
           + +I + G+ G++  A  L+ +M +      W +++ +C +N  N E
Sbjct: 299 TSLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTACAQNGDNWE 344



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 160/317 (50%), Gaps = 2/317 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +  CA+ R    G+  H +II  GL  D +  N L++ Y  CG     + VF  M
Sbjct: 161 TFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRM 220

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            Q  ++ W T+I   + NG+ +E + +F  M  EG    +E T  S++  C     V E 
Sbjct: 221 GQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEG-VKANEVTYMSMVEVCRNLDAVKEG 279

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +    L++    +  + T+L+ +Y +CG++  A  + E M +R+ V W++MV    QN
Sbjct: 280 EMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQN 339

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA- 273
               EA+ L RR  + G   N+ T  SV+ ACA L AL QG+++HA +   G      A 
Sbjct: 340 GDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAV 399

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +S++ MY KCG    A  VF  +  K+ V WN +I+    +++  + + LF  M+  GL
Sbjct: 400 GNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGL 459

Query: 334 HPNEQTYISVLSACSHI 350
             NE T +S+L AC  +
Sbjct: 460 RSNEFTLLSLLEACGGL 476


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/370 (49%), Positives = 254/370 (68%), Gaps = 8/370 (2%)

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           ++ ++ ACA +AAL QGKQVHA + K GF  ++  ++ LVDMY KCG + DA  VFS + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           E +V  WN MISG ++H    E ++LFE+M Q G+ PN+ T++ VLS CSH G+V++G++
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
           YFD M + H + P   HYSCM+D+ GRAG + EA + I  MP +  AS+WGSLL +CR +
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
            N+ELAE A +QL  + P+N G ++LLSNIYAA  RW++  + RK+++D  VKKE   SW
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 479 VEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           +E++        G  +HP+I EIY  LE L  +MK  GY P T   LHDVE+ +K+ +L 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           HHSEKLA+ FG++   PG  IR++KNLR+CGDCH+  KF SRI  RE ++RD +RFHHF 
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 591 NGSCSCWDFW 600
           +G CSC D+W
Sbjct: 361 DGQCSCGDYW 370



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 8/194 (4%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           ++ +L ACA+   + + KQ+H   +K   + +V V   L+D+Y KCG I DA  VF  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           E +  +W++M++G  Q+   +EA++LF +    G++ NQ T   V+  C+    + +G+ 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 258 VHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
               + +  G        S +VD++ + GC+ +A  F+     E N  +W +++     H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 316 A------RSVEVMI 323
                  R+VE +I
Sbjct: 181 GNIELAERAVEQLI 194



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 13/181 (7%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           +   L++CA   A  +GK  HA II +G   D   SN L++ Y KCG I  A++VF ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +  + SWN +I     +G  +EAV LF  ML+ G  P ++ T   VL  C+    V E +
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKP-NQITFVVVLSGCSHAGLVDEGR 119

Query: 156 QLHVFALKAAMDRNVFVG------TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
                    +M R+  +       + ++D++ + G + +A      MP E N   W S++
Sbjct: 120 NYF-----DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLL 174

Query: 209 A 209
            
Sbjct: 175 G 175


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/504 (40%), Positives = 296/504 (58%), Gaps = 39/504 (7%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
           FT S VL AC    DV   K +H    K     N+F+   +L++Y  CG + DA  +FE 
Sbjct: 11  FTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEK 70

Query: 196 MPERNEVTW-------------------------------SSMVAGFVQNELYEEALILF 224
           MP+R+ VTW                               +SM++GFVQ     EA+ LF
Sbjct: 71  MPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLF 130

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
            + +   +  N+ T+ SV+ ACA L  L  G+ VH    K+GF  N+   ++L+DMY KC
Sbjct: 131 MKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKC 190

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
           GC+ +A  VF  +EE+ VV W+ MI+G + H ++ E + LF +M + G+ PN  T+I +L
Sbjct: 191 GCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLL 250

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            ACSH+G++++G+ +F  M   + V+P + HY C++D+  RAGL+ EA++ IL+MP    
Sbjct: 251 HACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPN 310

Query: 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
             +WG+LL  C+ ++N++LAE A K L  ++P N G ++++SNIYA   RWE+ AR RKL
Sbjct: 311 GVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKL 370

Query: 465 IRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHD 516
           ++D  VKK    S + +         G + HP+  +I    +KL+ +MK+ GY P+T   
Sbjct: 371 MKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVV 430

Query: 517 LHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGR 576
           L D+E+  K++ L  HSEKLA+ FGLM    G PIRIMKNLR+C DCH+ +K  S I  R
Sbjct: 431 LLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGIVSR 490

Query: 577 ETIVRDLNRFHHFTNGSCSCWDFW 600
           E IVRD NRFH F +G CSC DFW
Sbjct: 491 EIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 153/314 (48%), Gaps = 34/314 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C +    V GK  H     +G  ++    N+++N Y  CG +  A  +F++M
Sbjct: 12  TCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKM 71

Query: 95  PQRCIVSWNTII----------GSY---------------------TTNGREQEAVALFI 123
           PQR  V+WN +I          G+Y                        G+  EA+ LF+
Sbjct: 72  PQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFM 131

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            +  E   P +E TV SVL ACA   D+   + +H ++ K+   RNV V   L+D+Y KC
Sbjct: 132 KLEDEAVRP-NEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKC 190

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + +A RVF  M ER  V+WS+M+AG   +   EEAL LF     LG++ N  T   ++
Sbjct: 191 GCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLL 250

Query: 244 CACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKN 301
            AC+ +  + +G++  A +    G    +     +VD++++ G + +A+ F+ S   + N
Sbjct: 251 HACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPN 310

Query: 302 VVLWNTMISGFSRH 315
            V+W  ++ G   H
Sbjct: 311 GVVWGALLGGCKVH 324


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/476 (40%), Positives = 306/476 (64%), Gaps = 14/476 (2%)

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
           EFT S +L A      V    ++H   +K   +R+  VGTALLD Y K G + +A++VF 
Sbjct: 1   EFTYSVILTALP----VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 56

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL-AALI 253
            + +++ V WS+M+AG+ Q    E A+ +F      G++ N+FT SS++  CA   A++ 
Sbjct: 57  GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG 116

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           QGKQ H    K+   S++  +S+L+ MYAK G +  A  VF    EK++V WN+MISG++
Sbjct: 117 QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYA 176

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           +H ++++ + +F++M++  +  +  T+I V +AC+H G+VE+G+ YFD+MV+   + P  
Sbjct: 177 QHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTK 236

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            H SCM+D+  RAG + +A  +I NMP  A +++W ++LA+CR ++  EL  +AA+++  
Sbjct: 237 EHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIA 296

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKR 485
           M+P+++  ++LLSN+YA +  W+E A+ RKL+ +  VKKE   SW+E+K        G R
Sbjct: 297 MKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDR 356

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
           +HP   +IY KLE L   +K LGY+P+T + L D++D  K+ +L  HSE+LA+ FGL+  
Sbjct: 357 SHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIAT 416

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHF-TNGSCSCWDFW 600
             G P+ I+KNLR+CGDCH  +K  ++I  RE +VRD NRFHHF ++G CSC DFW
Sbjct: 417 PKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 136/266 (51%), Gaps = 4/266 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+++       +     L++ Y K G +  A KVF  +  + IV+W+ ++  Y   G  
Sbjct: 20  HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGET 79

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVGT 174
           + A+ +F  + + G  P +EFT SS+L  CAA    + + KQ H FA+K+ +D ++ V +
Sbjct: 80  EAAIKMFGELTKGGIKP-NEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSS 138

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           ALL +YAK G I  A  VF+   E++ V+W+SM++G+ Q+    +AL +F+  +   ++ 
Sbjct: 139 ALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKM 198

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFV 293
           +  T   V  AC     + +G++   ++ +           S +VD+Y++ G +  A  V
Sbjct: 199 DGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 258

Query: 294 FSGIEEK-NVVLWNTMISGFSRHARS 318
              +       +W T+++    H ++
Sbjct: 259 IENMPNPAGSTIWRTILAACRVHKKT 284



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 4/179 (2%)

Query: 35  TLQATLQSCARERAPV-RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T  + L  CA   A + +GK  H   I   L++    S+ L+  Y+K G I  A +VF  
Sbjct: 100 TFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 159

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
             ++ +VSWN++I  Y  +G+  +A+ +F  M ++ K      T   V  AC     V E
Sbjct: 160 QREKDLVSWNSMISGYAQHGQAMKALDVFKEM-KKRKVKMDGVTFIGVFAACTHAGLVEE 218

Query: 154 C-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVAG 210
             K   +      +       + ++D+Y++ G +  A +V E+MP     T W +++A 
Sbjct: 219 GEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA 277


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 342/607 (56%), Gaps = 52/607 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CAR  +   GK  HAK+I      D   ++ LI  Y+KCG    A++VF+ 
Sbjct: 271 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  VSW  +IG         ++V LF N +R       +F +++++  C  + D+  
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELF-NQMRAELMAIDQFALATLISGCFNRMDLCL 389

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-------------- 199
            +QLH   LK+  +R + V  +L+ +YAKCG + +A  VF SM ER              
Sbjct: 390 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 200 -----------------NEVTWSSMVAGFVQNELYEEALILFRRA-QVLGLEYNQFTISS 241
                            N +TW++M+  ++Q+   E+ L ++        +  +  T  +
Sbjct: 450 IGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           +   CA + A   G Q+     K G   N+  A++ + MY+KCG + +A  +F  +  K+
Sbjct: 510 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 569

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV WN MI+G+S+H    +    F+ M   G  P+  +Y++VLS CSH G+V++GK YFD
Sbjct: 570 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 629

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           +M + H + P + H+SCM+D+LGRAG + EA DLI  MP   TA +WG+LL++C+ + N 
Sbjct: 630 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 689

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ELAE+AAK +F ++  ++G+++LL+ IY+   + ++ A+ RKL+RD  +KK    SW+E+
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEV 749

Query: 482 KGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           + K         +HP++  I +KL++L+E++  LGY           E  R +   IHHS
Sbjct: 750 ENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVR--------TESPRSE---IHHS 798

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FG+M L   +PI IMKNLRICGDCH+ +K  S +  RE ++RD  RFHHF +GS
Sbjct: 799 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 858

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 859 CSCGDYW 865



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 172/305 (56%), Gaps = 5/305 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y+K   I  A + F++M +R +VSWN +I + + +GR +EA+ L + M R+G  
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG-V 266

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
                T +S L ACA    +   KQLH   +++    + +V +AL+++YAKCG   +A R
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 326

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF S+ +RN V+W+ ++ G +Q E + +++ LF + +   +  +QF ++++I  C     
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H++  K+G    +  ++SL+ +YAKCG + +A FVFS + E+++V W +MI+ 
Sbjct: 387 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITA 446

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +S+    ++    F+ M       N  T+ ++L A    G  E G   +  M+ Q +V P
Sbjct: 447 YSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 502

Query: 372 NVFHY 376
           +   Y
Sbjct: 503 DWVTY 507



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 202/413 (48%), Gaps = 54/413 (13%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + +T NI++N Y+K G +S A ++FD MP+R + SWNT++  Y    R  + +  F++M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQL--HVFALKAAMD--RNVFVGTALLDVYAK 182
           R G +  + FT   V+ +C A      C++L   +  L    D   +  V TAL+D++ +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGA----LGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 183 CGLISDASRV-------------------------------FESMPERNEVTWSSMVAGF 211
           CG +  ASR+                               FE M ER+ V+W+ M+A  
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            Q+    EAL L       G+  +  T +S + ACA L +L  GKQ+HA + ++    + 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 305

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH---ARSVEVMILFEKM 328
           + AS+L+++YAKCG   +A  VF+ ++++N V W  +I G  ++   ++SVE   LF +M
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVE---LFNQM 362

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAG 387
           +   +  ++    +++S C +   +  G+    L +K  HN    +   + +I +  + G
Sbjct: 363 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHN--RAIVVSNSLISLYAKCG 420

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF-GMEPDNA 439
            +  A  +  +M      S W S++ +     N+    I A++ F GM+  NA
Sbjct: 421 DLQNAEFVFSSMSERDIVS-WTSMITAYSQIGNI----IKAREFFDGMDTRNA 468



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 143/339 (42%), Gaps = 35/339 (10%)

Query: 13  YKSFSSSA--IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT 70
           Y+ FS S        A   A +   L   +  C        G+  H+  +  G N   + 
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 408

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVS----------------------------- 101
           SN LI+ Y+KCG +  A  VF  M +R IVS                             
Sbjct: 409 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNA 468

Query: 102 --WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             WN ++G+Y  +G E++ + ++  ML +        T  ++   CA         Q+  
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIG 528

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +KA +  NV V  A + +Y+KCG IS+A ++F+ +  ++ V+W++M+ G+ Q+ + ++
Sbjct: 529 HTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQ 588

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLV 278
           A   F      G + +  +  +V+  C+    + +GK    ++ +  G    +   S +V
Sbjct: 589 AAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMV 648

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVV-LWNTMISGFSRHA 316
           D+  + G + +A  +   +  K    +W  ++S    H 
Sbjct: 649 DLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 136/347 (39%), Gaps = 70/347 (20%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR------ 191
           ++  L +C ++  +   + LH   +   +   VF+   LL  Y  CG +SDA R      
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 192 --------------------------VFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
                                     +F+ MP R+  +W+++++G+ Q   + + L  F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 226 RAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
                G    N FT   V+ +C  L       Q+  +  K  F  +    ++LVDM+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 285 GCVVDAYFVFSGIE-------------------------------EKNVVLWNTMISGFS 313
           G V  A  +FS IE                               E++VV WN MI+  S
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           +  R  E + L  +M + G+  +  TY S L+AC+ +  +  GK    L  K    LP +
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ---LHAKVIRSLPQI 303

Query: 374 FHY--SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
             Y  S +I++  + G   EA   + N   D  +  W  L+     Y
Sbjct: 304 DPYVASALIELYAKCGSFKEA-KRVFNSLQDRNSVSWTVLIGGSLQY 349


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/554 (37%), Positives = 328/554 (59%), Gaps = 21/554 (3%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           K+  M  + D +    +I+   K G +  AR++FDEM +R +++W T++  Y  N R  +
Sbjct: 162 KLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDD 221

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL-HVFALKAAMDRNVFVGTAL 176
           A  +F  M  +     +E + +S+L        + + ++L  V  +K      V    A+
Sbjct: 222 ARKIFDVMPEK-----TEVSWTSMLMGYVQNGRIEDAEELFEVMPVKP-----VIACNAM 271

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +    + G I+ A RVF+SM ERN+ +W +++    +N    EAL LF   Q  G+    
Sbjct: 272 ISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTF 331

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            T+ S++  CA LA+L  GKQVHA L +  F  +++ AS L+ MY KCG +V +  +F  
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDR 391

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEK 355
              K++++WN++ISG++ H    E + +F +M  +G   PNE T+++ LSACS+ GMVE+
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEE 451

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G   ++ M     V P   HY+CM+D+LGRAG  +EA ++I +M  +  A++WGSLL +C
Sbjct: 452 GLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGAC 511

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R +  L++AE  AK+L  +EP+N+G ++LLSN+YA+  RW +VA  RKL++   V+K   
Sbjct: 512 RTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPG 571

Query: 476 KSWVEIKGK---------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
            SW E++ K          +HP    I   L++L   +++ GY P+  + LHDV++  K 
Sbjct: 572 CSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKV 631

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
             L +HSE+LA+ + L+ L  G+PIR+MKNLR+C DCH+ +K  S++  RE I+RD NRF
Sbjct: 632 NSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRF 691

Query: 587 HHFTNGSCSCWDFW 600
           HHF NG CSC D+W
Sbjct: 692 HHFRNGECSCKDYW 705



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 164/372 (44%), Gaps = 65/372 (17%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + + ++ N L++ Y K G I  ARKVFD MP+R +VSW  ++  Y  NG+   A +LF  
Sbjct: 76  DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135

Query: 125 MLREGKTPYSEFTV-----SSVLCAC------AAKRDVFECKQLHVFALKAAMD------ 167
           M  + K  ++   +       +  AC        K ++     +H    +  +D      
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIF 195

Query: 168 -----RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
                R+V   T ++  Y +   + DA ++F+ MPE+ EV+W+SM+ G+VQN   E+A  
Sbjct: 196 DEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEE 255

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
           LF    V             + AC  +               +G G              
Sbjct: 256 LFEVMPV-----------KPVIACNAMI--------------SGLGQK------------ 278

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
             G +  A  VF  ++E+N   W T+I    R+   +E + LF  MQ+ G+ P   T IS
Sbjct: 279 --GEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336

Query: 343 VLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           +LS C+ +  +  GK     +V+ Q +V  +V+  S ++ +  + G + ++  LI +   
Sbjct: 337 ILSVCASLASLHHGKQVHAQLVRCQFDV--DVYVASVLMTMYIKCGELVKS-KLIFDRFP 393

Query: 402 DATASMWGSLLA 413
                MW S+++
Sbjct: 394 SKDIIMWNSIIS 405



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
             TL + L  CA   +   GK  HA+++    + D   +++L+  Y KCG +  ++ +FD
Sbjct: 331 FPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFD 390

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
             P + I+ WN+II  Y ++G  +EA+ +F  M   G T  +E T  + L AC+    V 
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450

Query: 153 ECKQLH-----VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
           E  +++     VF +K            ++D+  + G  ++A  + +SM  E +   W S
Sbjct: 451 EGLKIYESMESVFGVKPITAHY----ACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGS 506

Query: 207 MVAG 210
           ++  
Sbjct: 507 LLGA 510


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/578 (36%), Positives = 328/578 (56%), Gaps = 14/578 (2%)

Query: 34  STLQATLQSCARERAPVR---GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           ST  AT+     E   V+   G  C A  +G   ++  LT   LI+ +SKC  +  AR +
Sbjct: 204 STTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTG--LISVFSKCEDVDTARLL 261

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F  + +  +VS+N +I  ++ NG  + AV  F  +L  G+   S   V  +  +      
Sbjct: 262 FGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHL 321

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
              C  +  F +K+       V TAL  +Y++   I  A ++F+   E+    W++M++G
Sbjct: 322 HLAC-CIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISG 380

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q+ L E A+ LF+         N  TI+S++ ACA L AL  GK VH ++       N
Sbjct: 381 YAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQN 440

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           ++ +++L+DMYAKCG + +A  +F    EKN V WNTMI G+  H    E + LF +M  
Sbjct: 441 IYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLH 500

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G  P+  T++SVL ACSH G+V +G   F  MV ++ + P   HY+CM+DILGRAG + 
Sbjct: 501 LGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLE 560

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           +A + I  MP +   ++WG+LL +C  +++  LA +A+++LF ++P N G ++LLSNIY+
Sbjct: 561 KALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYS 620

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
             R + + A  R+ ++   + K    + +E+         G R+H +   IY+KLE+L  
Sbjct: 621 VERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTG 680

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           +M+++GY+ ET   LHDVE+  K+ +   HSEKLA+ FGL+   PG  IRI+KNLR+C D
Sbjct: 681 KMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLD 740

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH+  KF S+I  R  +VRD NRFHHF +G CSC D+W
Sbjct: 741 CHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 216/467 (46%), Gaps = 22/467 (4%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA  +  G +++   ++ L++ Y K   ++ ARKVFD+MP R  V WNT+I     
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           N    ++V +F +M+ +G       TV++VL A A  ++V     +   ALK     + +
Sbjct: 182 NCCYDDSVQVFKDMVAQG-VRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDY 240

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V T L+ V++KC  +  A  +F  + + + V+++++++GF  N   E A+  FR   V G
Sbjct: 241 VLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG 300

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              +  T+  +I   +    L     +     K+G       +++L  +Y++   +  A 
Sbjct: 301 QRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLAR 360

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F    EK V  WN MISG+++   +   + LF++M      PN  T  S+LSAC+ +G
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            +  GKS   L +K  N+  N++  + +ID+  + G I EA  L  ++  +     W ++
Sbjct: 421 ALSFGKSVHQL-IKSKNLEQNIYVSTALIDMYAKCGNISEASQL-FDLTSEKNTVTWNTM 478

Query: 412 L--ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN-----RRWEEVARARKL 464
           +       Y +  L         G +P +      LS +YA +     R  +E+  A   
Sbjct: 479 IFGYGLHGYGDEALKLFNEMLHLGFQPSSV---TFLSVLYACSHAGLVREGDEIFHAMVN 535

Query: 465 IRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
               E   E     V+I G+           +LEK +E ++K+  +P
Sbjct: 536 KYRIEPLAEHYACMVDILGRAG---------QLEKALEFIRKMPVEP 573



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 181/373 (48%), Gaps = 11/373 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA++I  G  +D  T   L       G    AR +F  +P+  I  +N +I  ++ +  +
Sbjct: 28  HAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFS-PD 86

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             +++ + ++L+        FT +  + A +   ++  C  LH  A+    D N+FV +A
Sbjct: 87  ASSISFYTHLLKNTTLSPDNFTYAFAISA-SPDDNLGMC--LHAHAVVDGFDSNLFVASA 143

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+D+Y K   ++ A +VF+ MP+R+ V W++M+ G V+N  Y++++ +F+     G+  +
Sbjct: 144 LVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLD 203

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+++V+ A A +  +  G  +  +  K GF  + +  + L+ +++KC  V  A  +F 
Sbjct: 204 STTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFG 263

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            I + ++V +N +ISGFS +  +   +  F ++  +G   +  T + ++   S  G +  
Sbjct: 264 MIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHL 323

Query: 356 GKSYFDLMVKQHNVL-PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
                   VK   +L P+V   + +  I  R   I  A  L  +   + T + W ++++ 
Sbjct: 324 ACCIQGFCVKSGTILQPSV--STALTTIYSRLNEIDLARQL-FDESSEKTVAAWNAMIS- 379

Query: 415 CRNYRNLELAEIA 427
              Y    L E+A
Sbjct: 380 --GYAQSGLTEMA 390



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 9/159 (5%)

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           + HA L + G+  ++   + L       G    A  +F  + + ++ L+N +I GFS   
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSP 85

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSAC--SHIGMVEKGKSYFDLMVKQHNVLPNVF 374
            +  +      ++   L P+  TY   +SA    ++GM     +  D          N+F
Sbjct: 86  DASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVD------GFDSNLF 139

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
             S ++D+  +   +  A  +   MP D    +W +++ 
Sbjct: 140 VASALVDLYCKFSRVAYARKVFDKMP-DRDTVLWNTMIT 177


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/563 (36%), Positives = 320/563 (56%), Gaps = 40/563 (7%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           + SN +I  +   GL+  A K+FDEM ++ +V+W+ +I  +  N   +EA+  F+ M + 
Sbjct: 311 IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKI 370

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG---- 184
           G     E    S L ACA    V   K +H  +LK   +  + +  AL+ +Y+KCG    
Sbjct: 371 G-VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMV 429

Query: 185 ---------------------------LISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
                                      L+ +A  +F+SMPE++ V+WSSM++G+ QN+L+
Sbjct: 430 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 489

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           +E L LF+  Q+ G + ++ T+ SVI ACA LAAL QGK VHA + + G   N+   ++L
Sbjct: 490 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTL 549

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +DMY KCGCV  A  VF G+ EK +  WN +I G + +      + +F  M++  + PNE
Sbjct: 550 IDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 609

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VL AC H+G+V++G+ +F  M+  H + PNV HY CM+D+LGRAG + EA +L+ 
Sbjct: 610 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 669

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            MP     + WG+LL +C+ + + E+     ++L  ++PD+ G H+LLSNIYA+  +W++
Sbjct: 670 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDD 729

Query: 458 VARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           V   R ++    V K    S +E        + G + HP +  I   L ++  ++K  GY
Sbjct: 730 VLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGY 789

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+    L DV++  K+  L  HSEKLA+ FGL+ + P  PIRIMKNLRIC DCH+  K 
Sbjct: 790 TPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKL 849

Query: 570 ASRIAGRETIVRDLNRFHHFTNG 592
            S+   R+ +VRD +RFHHF  G
Sbjct: 850 ISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 205/428 (47%), Gaps = 73/428 (17%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           F+ +   S  +N    +  T    +Q+C+  R+    K  H  ++ +G ++D    N LI
Sbjct: 196 FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 255

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           N +S C  ++ A +VF+E      VSWN+I+  Y   G  +EA  ++  M          
Sbjct: 256 NCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM---------- 305

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
                                          +R++    +++ ++   GL+ +A ++F+ 
Sbjct: 306 ------------------------------PERSIIASNSMIVLFGMRGLVVEACKLFDE 335

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           M E++ VTWS+++A F QNE+YEEA+  F     +G+  ++    S + ACA L  +  G
Sbjct: 336 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 395

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV-------DAYF---------------- 292
           K +H++  K G  S +   ++L+ MY+KCG ++       +AY                 
Sbjct: 396 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 455

Query: 293 --------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
                   +F  + EK+VV W++MISG++++    E + LF++MQ +G  P+E T +SV+
Sbjct: 456 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 515

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           SAC+ +  +E+GK +    +K++ +  NV   + +ID+  + G +  A ++   M  +  
Sbjct: 516 SACARLAALEQGK-WVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKG 573

Query: 405 ASMWGSLL 412
            S W +L+
Sbjct: 574 ISTWNALI 581



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 3/254 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y KC L+  A+ +FD MP++ +VSW+++I  Y  N    E +ALF  M 
Sbjct: 441 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 500

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
             G  P  E T+ SV+ ACA    + + K +H +  +  +  NV +GT L+D+Y KCG +
Sbjct: 501 MSGFKP-DETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCV 559

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  VF  M E+   TW++++ G   N L E +L +F   +   +  N+ T   V+ AC
Sbjct: 560 ETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 619

Query: 247 AGLAALIQGK-QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVL 304
             +  + +G+   ++++       N+     +VD+  + G + +A  + + +    +V  
Sbjct: 620 RHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVAT 679

Query: 305 WNTMISGFSRHARS 318
           W  ++    +H  S
Sbjct: 680 WGALLGACKKHGDS 693



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 5/180 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + + +CAR  A  +GK  HA I   GL  + +    LI+ Y KCG +  A +VF  
Sbjct: 509 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 568

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M ++ I +WN +I     NG  + ++ +F NM +   TP +E T   VL AC     V E
Sbjct: 569 MIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP-NEITFMGVLGACRHMGLVDE 627

Query: 154 CKQLHVFAL--KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWSSMVAG 210
             Q H +++     +  NV     ++D+  + G + +A  +   MP   +V TW +++  
Sbjct: 628 -GQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA 686



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 44/225 (19%)

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            ++Q      A  L++      L  + +T   +I AC+   +  + KQVH  + K GF S
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +++  ++L++ ++ C  + DA  VF+     + V WN++++G+                 
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIE--------------- 291

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
                               IG VE+ K  +  M ++  +  N      MI + G  GL+
Sbjct: 292 --------------------IGNVEEAKHIYHQMPERSIIASN-----SMIVLFGMRGLV 326

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
            EA  L   M  +     W +L+A    ++  E+ E A +   GM
Sbjct: 327 VEACKLFDEM-LEKDMVTWSALIAC---FQQNEMYEEAIRTFVGM 367


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 342/607 (56%), Gaps = 44/607 (7%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L++ L S  R + P   K  HA+II  GLN+       LI+ Y KCGL+  A K+FD +P
Sbjct: 12  LKSQLFSLGR-KNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALP 70

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRDVFE 153
           Q+  V+W T++ +   +    +A ++ + +L EG  P   F  SS++ ACA      V  
Sbjct: 71  QQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQP-DHFVFSSLIKACANLGSVHVKL 129

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQLH   L +    +  V ++L+D+YAK  L      VF+S+ E + ++W++M++G+ +
Sbjct: 130 GKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYAR 189

Query: 214 NELYEEALILFRR----------AQVLGLEY----------------------NQFTISS 241
           +    EAL LFR           A + GL                        +   +SS
Sbjct: 190 SGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSS 249

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           V+ ACA  A    GKQVH V+   G+ S +F +++LVDMYAKC  VV A ++F  +  K+
Sbjct: 250 VVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKD 309

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV W ++I G ++H  + E + L++ M  AG+ PNE T++ ++ ACSH+G+V KG++ F 
Sbjct: 310 VVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFK 369

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            MV+   + P++ HY+C++D+  R+G + EA +LI  MP       W +LL++C+++ N 
Sbjct: 370 SMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNT 429

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ++A   A  L  ++P++  +++LLSNIYA    WE V+  RKL+   EVKK    S V++
Sbjct: 430 KMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDL 489

Query: 482 --------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G+ + P   EI   + KL  EM++ GY P+T   L D++   K+  L  HS
Sbjct: 490 GREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHS 549

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           E+LAL +GL+   PG  IRI+KNLR+CGDCH+ +K  S I  RE  VRD+ R+HHF +G 
Sbjct: 550 ERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGK 609

Query: 594 CSCWDFW 600
           CSC DFW
Sbjct: 610 CSCNDFW 616



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 96/183 (52%), Gaps = 13/183 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + + +CA       GK  H  +I +G  +    SN L++ Y+KC  +  A+ +F EM
Sbjct: 246 VLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEM 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC------AAK 148
            ++ +VSW +II     +G  +EA+ L+ +M+  G  P +E T   ++ AC      +  
Sbjct: 306 RRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKP-NEVTFVGLIYACSHVGLVSKG 364

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSM 207
           R +F+   +  F ++ ++       T LLD++++ G + +A  +  +MP + +E TW+++
Sbjct: 365 RALFK-SMVEDFGIRPSLQHY----TCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAAL 419

Query: 208 VAG 210
           ++ 
Sbjct: 420 LSA 422


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 342/607 (56%), Gaps = 52/607 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CAR  +   GK  HAK+I      D   ++ LI  Y+KCG    A++VF+ 
Sbjct: 271 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  VSW  +IG         ++V LF N +R       +F +++++  C  + D+  
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELF-NQMRAELMAIDQFALATLISGCFNRMDLCL 389

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-------------- 199
            +QLH   LK+  +R + V  +L+ +YAKCG + +A  VF SM ER              
Sbjct: 390 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 449

Query: 200 -----------------NEVTWSSMVAGFVQNELYEEALILFRRA-QVLGLEYNQFTISS 241
                            N +TW++M+  ++Q+   E+ L ++        +  +  T  +
Sbjct: 450 IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 509

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           +   CA + A   G Q+     K G   N+  A++ + MY+KCG + +A  +F  +  K+
Sbjct: 510 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 569

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV WN MI+G+S+H    +    F+ M   G  P+  +Y++VLS CSH G+V++GK YFD
Sbjct: 570 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 629

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           +M + H + P + H+SCM+D+LGRAG + EA DLI  MP   TA +WG+LL++C+ + N 
Sbjct: 630 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 689

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ELAE+AAK +F ++  ++G+++LL+ IY+   + ++ A+ RKL+RD  +KK    SW+E+
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEV 749

Query: 482 KGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           + K         +HP++  I +K+++L+E++  LGY           E  R +   IHHS
Sbjct: 750 ENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVR--------TESPRSE---IHHS 798

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FG+M L   +PI IMKNLRICGDCH+ +K  S +  RE ++RD  RFHHF +GS
Sbjct: 799 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 858

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 859 CSCGDYW 865



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 172/305 (56%), Gaps = 5/305 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y+K   I  A + F++M +R +VSWN +I + + +GR +EA+ L + M R+G  
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG-V 266

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
                T +S L ACA    +   KQLH   +++    + +V +AL+++YAKCG   +A R
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 326

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF S+ +RN V+W+ ++ G +Q E + +++ LF + +   +  +QF ++++I  C     
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H++  K+G    +  ++SL+ +YAKCG + +A FVFS + E+++V W +MI+ 
Sbjct: 387 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITA 446

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +S+    ++    F+ M       N  T+ ++L A    G  E G   +  M+ Q +V P
Sbjct: 447 YSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 502

Query: 372 NVFHY 376
           +   Y
Sbjct: 503 DWVTY 507



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 201/413 (48%), Gaps = 54/413 (13%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + +T NI++N Y+K G +S A ++FD MP+R + SWNT++  Y    R  + +  F++M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQL--HVFALKAAMD--RNVFVGTALLDVYAK 182
           R G +  + FT   V+ +C A      C++L   +  L    D   +  V TAL+D++ +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGA----LGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 183 CGLISDASRV-------------------------------FESMPERNEVTWSSMVAGF 211
           CG +  ASR+                               FE M ER+ V+W+ M+A  
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            Q+    EAL L       G+  +  T +S + ACA L +L  GKQ+HA + ++    + 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 305

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH---ARSVEVMILFEKM 328
           + AS+L+++YAKCG   +A  VF+ ++++N V W  +I G  ++   ++SVE   LF +M
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVE---LFNQM 362

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAG 387
           +   +  ++    +++S C +   +  G+    L +K  HN    +   + +I +  + G
Sbjct: 363 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHN--RAIVVSNSLISLYAKCG 420

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF-GMEPDNA 439
            +  A  +  +M      S W S++ +     N+    I A++ F GM   NA
Sbjct: 421 DLQNAEFVFSSMSERDIVS-WTSMITAYSQIGNI----IKAREFFDGMATRNA 468



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 143/339 (42%), Gaps = 35/339 (10%)

Query: 13  YKSFSSSA--IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT 70
           Y+ FS S        A   A +   L   +  C        G+  H+  +  G N   + 
Sbjct: 349 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 408

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVS----------------------------- 101
           SN LI+ Y+KCG +  A  VF  M +R IVS                             
Sbjct: 409 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNA 468

Query: 102 --WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             WN ++G+Y  +G E++ + ++  ML +        T  ++   CA         Q+  
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIG 528

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +KA +  NV V  A + +Y+KCG IS+A ++F+ +  ++ V+W++M+ G+ Q+ + ++
Sbjct: 529 HTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQ 588

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLV 278
           A   F      G + +  +  +V+  C+    + +GK    ++ +  G    +   S +V
Sbjct: 589 AAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMV 648

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVV-LWNTMISGFSRHA 316
           D+  + G + +A  +   +  K    +W  ++S    H 
Sbjct: 649 DLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 136/347 (39%), Gaps = 70/347 (20%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR------ 191
           ++  L +C ++  +   + LH   +   +   VF+   LL  Y  CG +SDA R      
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 192 --------------------------VFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
                                     +F+ MP R+  +W+++++G+ Q   + + L  F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 226 RAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
                G    N FT   V+ +C  L       Q+  +  K  F  +    ++LVDM+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 285 GCVVDAYFVFSGIE-------------------------------EKNVVLWNTMISGFS 313
           G V  A  +FS IE                               E++VV WN MI+  S
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           +  R  E + L  +M + G+  +  TY S L+AC+ +  +  GK    L  K    LP +
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ---LHAKVIRSLPQI 303

Query: 374 FHY--SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
             Y  S +I++  + G   EA   + N   D  +  W  L+     Y
Sbjct: 304 DPYVASALIELYAKCGSFKEA-KRVFNSLQDRNSVSWTVLIGGSLQY 349


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 336/593 (56%), Gaps = 42/593 (7%)

Query: 48  APVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107
           A VRG   HA+I+  GL +       L++ Y+K  L+  A  +FDE P+R I  +++++ 
Sbjct: 102 AAVRG--MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLT 159

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
           + + +   + A+ +   ML         F +SSV    A  R     +QLH   + +  +
Sbjct: 160 AVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYN 219

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR- 226
            +  V ++L+D+Y KCG   D  +VF+SM  +N V W+++V+G+  N   EEAL LFR  
Sbjct: 220 GDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 279

Query: 227 ---------AQVLGLEY----------------------NQFTISSVICACAGLAALIQG 255
                    A + GL                        + F +S VI   A LAA + G
Sbjct: 280 PGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLG 339

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +Q+H    + GF SNM   ++L+DMY+KC  ++ A  VF GI  ++V+ W TM+ G ++H
Sbjct: 340 RQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQH 399

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
            R+ E + L+++M  AG  PNE T++ ++ ACSH G+V+KG+  F+ M  ++ + P + H
Sbjct: 400 GRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQH 459

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           Y+C +D+L R+G + EA +L+  MP++   + WG+LL++C  Y++ E+    + +L  + 
Sbjct: 460 YTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELR 519

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNH 487
           P ++  ++LLSN+YA N +W+ VA+ RK +   E++KE   SW+E          G+   
Sbjct: 520 PKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPL 579

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
               EI   LE++V EM+K GY P+T   +HD+E+S K+  L  HSE+LA+ FGL+   P
Sbjct: 580 DVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPP 639

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G  IR++KNLR+C DCH+ MK  S I  R+ +VRD +RFHHF  G CSC +FW
Sbjct: 640 GSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 162/351 (46%), Gaps = 36/351 (10%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           SA+A   +   + +     AR R+   G+  HA  +    N D +  + L++ Y KCG  
Sbjct: 179 SADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSP 238

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA-------------------------- 118
              RKVFD M  +  V W  ++  Y +NGR +EA                          
Sbjct: 239 DDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTG 298

Query: 119 -----VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
                V LF+ M R+G      F +S V+   A        +QLH   ++     N+ VG
Sbjct: 299 ESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVG 358

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            AL+D+Y+KC  I  A  VFE +  R+ ++W++MV G  Q+   EEAL L+ R  + G +
Sbjct: 359 NALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAK 418

Query: 234 YNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
            N+ T   +I AC+    + +G+Q+  ++  + G    +   +  +D+ ++ G +++A  
Sbjct: 419 PNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEE 478

Query: 293 VFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE-QTYI 341
           + + +  E +   W  ++S  +++  +   + + +K+ +  L P +  TYI
Sbjct: 479 LMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE--LRPKDSSTYI 527


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 336/563 (59%), Gaps = 24/563 (4%)

Query: 58  KIIGMGLNNDTLTSNI-----LINFYSKCGLISGARKVFDEMPQRCIVS---WNTIIGSY 109
           KI  + LNN +L  N      LI  +S C  +  ARK+FD++    +++   W  +   Y
Sbjct: 152 KICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGY 211

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           + NG  ++A+ ++++ML     P   F++S  L AC   +D+   + +H   +K     +
Sbjct: 212 SRNGSPRDALIVYVDMLCSFIEP-GNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVD 270

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
             V   LL +Y + GL  DA +VF+ M ERN VTW+S+++   +     E   LFR+ Q 
Sbjct: 271 QVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQE 330

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             + ++  T+++++ AC+ +AAL+ GK++HA + K+    ++   +SL+DMY KCG V  
Sbjct: 331 EMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEY 390

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           +  VF  +  K++  WN M++ ++ +    EV+ LFE M ++G+ P+  T++++LS CS 
Sbjct: 391 SRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSD 450

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+ E G S F+ M  +  V P + HY+C++DILGRAG I EA  +I  MPF  +AS+WG
Sbjct: 451 TGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWG 510

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLL SCR + N+ + EIAAK+LF +EP N GN++++SNIYA  + W+ V + R++++   
Sbjct: 511 SLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRG 570

Query: 470 VKKEKSKSWVEIKGK------------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517
           VKKE   SWV++K K            RN     +++++L++ +E   K GY P T   L
Sbjct: 571 VKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIE---KSGYSPNTSVVL 627

Query: 518 HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRE 577
           HDV++  K   +  HSE+LA T+ L+    GVPIRI KNLR+C DCHS+MK  S++  R 
Sbjct: 628 HDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRV 687

Query: 578 TIVRDLNRFHHFTNGSCSCWDFW 600
            ++RD  RFHHF +G CSC D+W
Sbjct: 688 IVLRDTKRFHHFVDGICSCKDYW 710


>gi|2244842|emb|CAB10264.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268231|emb|CAB78527.1| hypothetical protein [Arabidopsis thaliana]
          Length = 587

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/568 (38%), Positives = 312/568 (54%), Gaps = 40/568 (7%)

Query: 41  QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV 100
           ++ A  R PV GK  HA  +  G   D        + Y K  L   ARK+FDE+P+R + 
Sbjct: 52  EAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE 111

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           +WN  I +  T+GR +EA+  FI   R    P S  T  + L AC+    +    QLH  
Sbjct: 112 TWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNS-ITFCAFLNACSDWLHLNLGMQLHGL 170

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
            L++  D +V + ++ +              +F  M  +N V+W S+VA +VQN   E+A
Sbjct: 171 VLRSGFDTDVSIRSSEI--------------IFTEMGTKNAVSWCSLVAAYVQNHEDEKA 216

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
            +L+ R++   +E + F ISSV+ ACAG+A L  G+ +HA   K      +F  S+LVDM
Sbjct: 217 SVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDM 276

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y KCGC+ D+   F  + EKN+V  N++I G++   +    + LFE+M   G        
Sbjct: 277 YGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRG-------- 328

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
                     G VE G   FD M   + + P   HYSC++D+LGRAG++  AY+ I  MP
Sbjct: 329 ---------CGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMP 379

Query: 401 FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460
              T S+WG+L  +CR +   +L  +AA+ LF ++P ++GNH+LLSN +AA  RW E   
Sbjct: 380 IQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANT 439

Query: 461 ARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
            R+ ++   +KK    SW+ +K +        R+H    EI + L KL  EM+  GYKP+
Sbjct: 440 VREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPD 499

Query: 513 TEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASR 572
            +  L+D+E+  K   + HHSEKLAL FGL+ L   VPIRI KNLRICGDCHSF KF S 
Sbjct: 500 LKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSG 559

Query: 573 IAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              RE IVRD NRFH F +G CSC D+W
Sbjct: 560 SVKREIIVRDNNRFHRFKDGICSCKDYW 587



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 30/323 (9%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           YSK      AR V    P R +VSW ++I     NG    A+  F  M RE         
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRRE--------- 52

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
                 A A+ R     KQ+H  A+K     +VFVG +  D+Y K  L  DA ++F+ +P
Sbjct: 53  ------AVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 106

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           ERN  TW++ ++  V +    EA+  F   + +    N  T  + + AC+    L  G Q
Sbjct: 107 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 166

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           +H ++ ++GF +++   SS +              +F+ +  KN V W ++++ + ++  
Sbjct: 167 LHGLVLRSGFDTDVSIRSSEI--------------IFTEMGTKNAVSWCSLVAAYVQNHE 212

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
             +  +L+ + ++  +  ++    SVLSAC+ +  +E G+S     VK   V   +F  S
Sbjct: 213 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKA-CVERTIFVGS 271

Query: 378 CMIDILGRAGLIHEAYDLILNMP 400
            ++D+ G+ G I ++      MP
Sbjct: 272 ALVDMYGKCGCIEDSEQAFDEMP 294



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 89/197 (45%), Gaps = 28/197 (14%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF---RRAQVLGLEYN 235
           +Y+K      A  V    P RN V+W+S+++G  QN  +  AL+ F   RR  V      
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREAV------ 54

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
                      A L   + GKQ+HA+  K G   ++F   S  DMY K     DA  +F 
Sbjct: 55  -----------ASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFD 103

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS-----HI 350
            I E+N+  WN  IS      R  E +  F + ++   HPN  T+ + L+ACS     ++
Sbjct: 104 EIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNL 163

Query: 351 GMVEKG---KSYFDLMV 364
           GM   G   +S FD  V
Sbjct: 164 GMQLHGLVLRSGFDTDV 180



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           + + L +CA       G+  HA  +   +       + L++ Y KCG I  + + FDEMP
Sbjct: 235 ISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 294

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
           ++ +V+ N++IG Y   G+   A+ALF  M   G
Sbjct: 295 EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRG 328


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 354/613 (57%), Gaps = 53/613 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S L + + SC   ++  + K  HA++I   L +  +++N L+   + C  +S A K+FD+
Sbjct: 17  SRLVSLIDSC---KSMQQIKQTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQ 72

Query: 94  MPQRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           +PQ  +  +NT+I +++ +      ++ +F ++ ++     + ++      AC     V 
Sbjct: 73  IPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQ 132

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE------------------ 194
           E +Q+ + A+K  ++ NVFV  AL+ +Y K GL+ ++ +VF+                  
Sbjct: 133 EGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYV 192

Query: 195 -------------SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
                         M ER+ V+WS+++AG+VQ   + EAL  F +   +G + N++T+ S
Sbjct: 193 GSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVS 252

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            + AC+ L AL QGK +HA + K     N    +S++DMYAKCG +  A  VF   + K 
Sbjct: 253 ALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQ 312

Query: 302 VV-LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
            V LWN MI GF+ H    E + +FE+M+   + PN+ T+I++L+ACSH  MVE+GK YF
Sbjct: 313 KVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYF 372

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
            LMV  + + P + HY CM+D+L R+GL+ EA D+I +MP     ++WG+LL +CR Y++
Sbjct: 373 RLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKD 432

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK---- 476
           +E      + + GM+P++ G H+LLSNIY+ + RW E   AR L   +E+ +++ K    
Sbjct: 433 MERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNE---ARILREKNEISRDRKKIPGC 489

Query: 477 SWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
           S +E+K        G ++HP+  EIYS L+++  ++K  GY PE    LHD++D   +E 
Sbjct: 490 SSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKET 549

Query: 529 LIH-HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
            +  HSEKLA+ FGLM    G PIRI+KNLR+CGDCH   KF S++  R  IVRD  R+H
Sbjct: 550 ALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYH 609

Query: 588 HFTNGSCSCWDFW 600
           HF +G CSC D+W
Sbjct: 610 HFEDGICSCKDYW 622


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/583 (35%), Positives = 337/583 (57%), Gaps = 9/583 (1%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
            N    +L+T+ A L + A  +    G       I  G  +       LI+ +SKCG + 
Sbjct: 24  GNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVE 83

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            AR +F E+ ++ ++S N +I  +T NG  +++V LF  +L  G+   S  T+  ++   
Sbjct: 84  IARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGER-VSSSTIVGLIPVY 142

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           +     + C  +H F +K  +  +  V TAL  VY +   +  A ++F+   E+   +W+
Sbjct: 143 SPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWN 202

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +M++G  QN L + A+ LF+  Q   +  N  T++S++ ACA + AL  G+ VH+++   
Sbjct: 203 AMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSN 262

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
            F SN++ +++L+DMYAKCG +  A  +F  + EKN V WN MISG+  H    E + LF
Sbjct: 263 RFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLF 322

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385
             M  + + P   T++SVL ACSH G+V++G   F  MV      P   HY+CM+DILGR
Sbjct: 323 YDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGR 382

Query: 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445
           AG + +A + I  MP +    +WG+LL +C  +++  LA +A+++LF ++P+N G ++L+
Sbjct: 383 AGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLM 442

Query: 446 SNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKL 497
           SNIY+  R++ + A  R++ +   + K    + +EI         G ++HP+   IY++L
Sbjct: 443 SNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAEL 502

Query: 498 EKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           +KL  +M + G++ ET   LHD+E+  K+  +  HSEKLA+ FGL+   PG  IRI+KNL
Sbjct: 503 DKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNL 562

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           R+C DCH++ KF S+I  R  +VRD NRFHHF +G CSC D+W
Sbjct: 563 RVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 155/309 (50%), Gaps = 2/309 (0%)

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
           +I  +  N   ++++ +F +M+      +   TV +VL A A  +++    Q+   A+K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
               +V + T L+ +++KCG +  A  +F  + +++ ++ ++M++GF  N   E+++ LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
           +     G   +  TI  +I   +          +H    K G  S+   +++L  +Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 285 GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
             ++ A  +F    EK +  WN MISG +++  +   + LF+ MQ+  ++PN  T  S+L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           SAC+ IG +  G+ +   ++K +    NV+  + +ID+  + G I  A +L   MP +  
Sbjct: 241 SACAQIGALSLGE-WVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP-EKN 298

Query: 405 ASMWGSLLA 413
              W ++++
Sbjct: 299 EVTWNAMIS 307


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 342/607 (56%), Gaps = 52/607 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CAR  +   GK  HAK+I      D   ++ LI  Y+KCG    A++VF+ 
Sbjct: 261 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 320

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  VSW  +IG         ++V LF N +R       +F +++++  C  + D+  
Sbjct: 321 LQDRNSVSWTVLIGGSLQYECFSKSVELF-NQMRAELMAIDQFALATLISGCFNRMDLCL 379

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-------------- 199
            +QLH   LK+  +R + V  +L+ +YAKCG + +A  VF SM ER              
Sbjct: 380 GRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQ 439

Query: 200 -----------------NEVTWSSMVAGFVQNELYEEALILFRRA-QVLGLEYNQFTISS 241
                            N +TW++M+  ++Q+   E+ L ++        +  +  T  +
Sbjct: 440 IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT 499

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           +   CA + A   G Q+     K G   N+  A++ + MY+KCG + +A  +F  +  K+
Sbjct: 500 LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKD 559

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV WN MI+G+S+H    +    F+ M   G  P+  +Y++VLS CSH G+V++GK YFD
Sbjct: 560 VVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFD 619

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           +M + H + P + H+SCM+D+LGRAG + EA DLI  MP   TA +WG+LL++C+ + N 
Sbjct: 620 MMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGND 679

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ELAE+AAK +F ++  ++G+++LL+ IY+   + ++ A+ RKL+RD  +KK    SW+E+
Sbjct: 680 ELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEV 739

Query: 482 KGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
           + K         +HP++  I +K+++L+E++  LGY           E  R +   IHHS
Sbjct: 740 ENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVR--------TESPRSE---IHHS 788

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FG+M L   +PI IMKNLRICGDCH+ +K  S +  RE ++RD  RFHHF +GS
Sbjct: 789 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 848

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 849 CSCGDYW 855



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 172/305 (56%), Gaps = 5/305 (1%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N ++  Y+K   I  A + F++M +R +VSWN +I + + +GR +EA+ L + M R+G  
Sbjct: 198 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG-V 256

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
                T +S L ACA    +   KQLH   +++    + +V +AL+++YAKCG   +A R
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF S+ +RN V+W+ ++ G +Q E + +++ LF + +   +  +QF ++++I  C     
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 376

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L  G+Q+H++  K+G    +  ++SL+ +YAKCG + +A FVFS + E+++V W +MI+ 
Sbjct: 377 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITA 436

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +S+    ++    F+ M       N  T+ ++L A    G  E G   +  M+ Q +V P
Sbjct: 437 YSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 492

Query: 372 NVFHY 376
           +   Y
Sbjct: 493 DWVTY 497



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 203/450 (45%), Gaps = 60/450 (13%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-EM 94
           L   L+SC    A    +  H +++ +GL +     N L++ Y  CG +S AR++   ++
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA-----CAAKR 149
            +  +++ N ++  Y   G   +A  LF  M R     ++     +   A     C A  
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGA-- 140

Query: 150 DVFECKQL--HVFALKAAMD--RNVFVGTALLDVYAKCGLISDASRV------------- 192
               C++L   +  L    D   +  V TAL+D++ +CG +  ASR+             
Sbjct: 141 --LGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRN 198

Query: 193 ------------------FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
                             FE M ER+ V+W+ M+A   Q+    EAL L       G+  
Sbjct: 199 SMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL 258

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           +  T +S + ACA L +L  GKQ+HA + ++    + + AS+L+++YAKCG   +A  VF
Sbjct: 259 DSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVF 318

Query: 295 SGIEEKNVVLWNTMISGFSRH---ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
           + ++++N V W  +I G  ++   ++SVE   LF +M+   +  ++    +++S C +  
Sbjct: 319 NSLQDRNSVSWTVLIGGSLQYECFSKSVE---LFNQMRAELMAIDQFALATLISGCFNRM 375

Query: 352 MVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
            +  G+    L +K  HN    +   + +I +  + G +  A  +  +M      S W S
Sbjct: 376 DLCLGRQLHSLCLKSGHN--RAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVS-WTS 432

Query: 411 LLASCRNYRNLELAEIAAKQLF-GMEPDNA 439
           ++ +     N+    I A++ F GM   NA
Sbjct: 433 MITAYSQIGNI----IKAREFFDGMATRNA 458



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 143/339 (42%), Gaps = 35/339 (10%)

Query: 13  YKSFSSSA--IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT 70
           Y+ FS S        A   A +   L   +  C        G+  H+  +  G N   + 
Sbjct: 339 YECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVV 398

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVS----------------------------- 101
           SN LI+ Y+KCG +  A  VF  M +R IVS                             
Sbjct: 399 SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNA 458

Query: 102 --WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             WN ++G+Y  +G E++ + ++  ML +        T  ++   CA         Q+  
Sbjct: 459 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIG 518

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +KA +  NV V  A + +Y+KCG IS+A ++F+ +  ++ V+W++M+ G+ Q+ + ++
Sbjct: 519 HTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQ 578

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLV 278
           A   F      G + +  +  +V+  C+    + +GK    ++ +  G    +   S +V
Sbjct: 579 AAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMV 638

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVV-LWNTMISGFSRHA 316
           D+  + G + +A  +   +  K    +W  ++S    H 
Sbjct: 639 DLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 677


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/548 (38%), Positives = 331/548 (60%), Gaps = 13/548 (2%)

Query: 65  NNDTLTSNILINFYSKC--GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           + D  + N L+    +   GL S AR +FD MP+R   SW+ I+ ++  +G+ + A+A++
Sbjct: 89  STDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIY 147

Query: 123 INMLREGKTP--YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
             MLRE  +    +EFT SS L A  A R     ++LH   ++  +D +  V +AL D+Y
Sbjct: 148 RRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMY 207

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           AKCG + DA  VF+ MP R+ V+W++MV  +       E   LF R    G++ N+FT +
Sbjct: 208 AKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYA 267

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
            V+ ACA   +   GKQVH  + K+  G + FA S+LV MY+K G +  A  VF G+ + 
Sbjct: 268 GVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKL 327

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++V W  MISG++++ +  E +  F+ + ++G  P+  T++ VLSAC+H G+V+KG S F
Sbjct: 328 DLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIF 387

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             +  ++ +     HY+C+ID+L R+GL   A ++I  M       +W SLL  CR ++N
Sbjct: 388 HSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKN 447

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           + LA  AA+ LF +EP+N   ++ L+NIYA+   ++EV   R+++    + K  + SW+E
Sbjct: 448 VRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIE 507

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           +         G + HP+  ++Y+ L+KL  +M++ GY  +T   LHDVED +KQ+ + +H
Sbjct: 508 VGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYH 567

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SE+LA+ FG++    G PI++ KNLRICGDCH+ +K  S+I  RE IVRD NRFHHF NG
Sbjct: 568 SERLAVAFGIIATPKGAPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNG 627

Query: 593 SCSCWDFW 600
           SCSC D+W
Sbjct: 628 SCSCRDYW 635



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 157/311 (50%), Gaps = 14/311 (4%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++  G++ D +  + L + Y+KCG +  AR VFD MP R +VSW  ++  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFD 240

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
             R+ E   LF+ MLR G  P +EFT + VL ACA        KQ+H    K+    + F
Sbjct: 241 ARRDGEGFRLFVRMLRSGIQP-NEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCF 299

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
             +AL+ +Y+K G +  A RVF  MP+ + V+W++M++G+ QN   +EAL  F      G
Sbjct: 300 AESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSG 359

Query: 232 LEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
              +  T   V+ ACA    + +G  + H++  + G        + ++D+ ++ G    A
Sbjct: 360 CRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERA 419

Query: 291 YFVFSGIEEK-NVVLWNTMISGFSRHARSVEVM-----ILFEKMQQAGLHPNEQTYISVL 344
             + + +  K N  LW +++ G   H ++V +       LFE   +     N  TY+++ 
Sbjct: 420 EEMINTMSVKPNKFLWASLLGGCRIH-KNVRLARWAAEALFEIEPE-----NPATYVTLA 473

Query: 345 SACSHIGMVEK 355
           +  + +G+ ++
Sbjct: 474 NIYASVGLFDE 484


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 335/581 (57%), Gaps = 15/581 (2%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           +ST  A +++C R ++    K  +  ++  G   +    N ++  + KCG+I  AR++FD
Sbjct: 123 VSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFD 182

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           E+P+R + S+ +II  +   G   EA  LF  M+ E  +     T + +L A A    ++
Sbjct: 183 EIPERNLYSYYSIISGFVNFGNYVEAFELF-KMMWEELSDCETHTFAVMLRASAGLGSIY 241

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
             KQLHV ALK  +  N FV   L+D+Y+KCG I DA   FE MPE+  V W++++AG+ 
Sbjct: 242 VGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYA 301

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            +   EEAL L    +  G+  +QFT+S +I     LA L   KQ HA L + GF S + 
Sbjct: 302 LHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIV 361

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           A ++LVD Y+K G V  A +VF  +  KN++ WN ++ G++ H R  + + LFEKM  A 
Sbjct: 362 ANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAAN 421

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T+++VLSAC++ G+ E+G   F  M + H + P   HY+CMI++LGR GL+ EA
Sbjct: 422 VAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEA 481

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
              I   P   T +MW +LL +CR   NLEL  + A++L+GM P+  GN++++ N+Y + 
Sbjct: 482 IAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSM 541

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIA-------------EIYSKLEK 499
            +  E A   + +    +    + +WVE+ G + H  ++             +IY K+++
Sbjct: 542 GKTAEAAGVLETLESKGLSMMPACTWVEV-GDQTHSFLSGDRFDSYNETVKRQIYQKVDE 600

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           L+EE+ + GY  E +H L DV++  ++ +  +HSEKLA+ +GL+      P++I +N RI
Sbjct: 601 LMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRI 660

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C +CH  ++F S + GRE +VRD +RFHHF  G CSC  +W
Sbjct: 661 CKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 137/282 (48%), Gaps = 3/282 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E  T    L++ A   +   GK  H   + +G+ ++T  S  LI+ YSKCG I  AR  F
Sbjct: 223 ETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAF 282

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           + MP++  V+WN +I  Y  +G  +EA+ L  +M R+      +FT+S ++        +
Sbjct: 283 ECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDM-RDSGVSIDQFTLSIMIRISTKLAKL 341

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              KQ H   ++   +  +   TAL+D Y+K G +  A  VF+ +P +N ++W++++ G+
Sbjct: 342 ELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGY 401

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSN 270
             +    +A+ LF +     +  N  T  +V+ ACA      QG ++   + +  G    
Sbjct: 402 ANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPR 461

Query: 271 MFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISG 311
               + ++++  + G + +A  F+     +  V +W  +++ 
Sbjct: 462 AMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNA 503


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/585 (35%), Positives = 340/585 (58%), Gaps = 42/585 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTS-NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G++  AKI+   ++   + S N +I  Y +  ++  A  +F+ MP R  +SW  +I  Y 
Sbjct: 335 GRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYA 394

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NGR ++A+     + R+G    S  +++S   AC+    +   KQ+H  A+KA    N 
Sbjct: 395 RNGRSEQALVSLQALHRKGML-PSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNS 453

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR----- 225
           +V  AL+ +Y K   I    ++F+ M  ++ V+++S ++  VQN L++EA  +F      
Sbjct: 454 YVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSP 513

Query: 226 -------------------------RAQVLGLEYNQFTISSVICACAG-LAALIQGKQVH 259
                                    R+ +   E     I +++   +G L A   G+Q+H
Sbjct: 514 DVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIH 573

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
            +  K G  S +  A++LV MY KC    D+  VF  +EE+++  WNT+I+G+++H    
Sbjct: 574 TIAIKLGMDSGLVVANALVSMYFKCSSA-DSLKVFDSMEERDIFTWNTIITGYAQHGLGR 632

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + +++ M  AG+ PNE T++ +L ACSH G+V++G  +F  M   + + P + HY+CM
Sbjct: 633 EAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACM 692

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           +D+LGRAG +  A   I +MP +  + +W +LL +C+ ++N+E+   AA++LF +EP NA
Sbjct: 693 VDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNA 752

Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
           GN+++LSNIY++   W+EVA+ RKL+++  V K+   SW++IK        G   H +I 
Sbjct: 753 GNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQ 812

Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
            IY+ L +L   +K  GY P+T+  LHD+++ +K+  L++HSEKLA+ +GL+    G+PI
Sbjct: 813 NIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPI 872

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           +IMKNLRICGDCH+F+KF S +  RE  VRD NRFHHF NGSCSC
Sbjct: 873 QIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 155/352 (44%), Gaps = 50/352 (14%)

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
           T  IL++ Y++ G +  AR+VFD M  R  V+WN ++  Y  NG    A  LF       
Sbjct: 97  TGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLF------- 149

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
                                             A   R+V     +L  Y    L+ +A
Sbjct: 150 ---------------------------------DAMPSRDVSSWNTMLTGYCHSQLMEEA 176

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
             +FE MPERN V+W+ M++G+V  E +  A  +FR     G+   Q  + SV+ A   L
Sbjct: 177 RNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHL 236

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD-AYFVFSGIEEKNVVLWNTM 308
                 + +H ++ KTGF  ++   +++++ Y K   ++D A   F G+  +N   W+T+
Sbjct: 237 GKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTI 296

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+  S+  R  +   ++++     +     +  S+L+  +  G ++  K  FD + +   
Sbjct: 297 IAALSQAGRIDDAFAVYQRDPLKSV----PSRTSMLTGLARYGRIDDAKILFDQIHE--- 349

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             PNV  ++ MI    +  ++ EA DL   MPF  T S  G +    RN R+
Sbjct: 350 --PNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRS 399



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 155/334 (46%), Gaps = 17/334 (5%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSK-CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR 114
           H  +   G   D +    ++N Y+K   ++  A K F+ M  R   +W+TII + +  GR
Sbjct: 246 HVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGR 305

Query: 115 EQEAVALFINMLREGKTPYSEF-TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
             +A A++       + P     + +S+L   A    + + K L         + NV   
Sbjct: 306 IDDAFAVY------QRDPLKSVPSRTSMLTGLARYGRIDDAKIL----FDQIHEPNVVSW 355

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            A++  Y +  ++ +A  +F  MP RN ++W+ M+AG+ +N   E+AL+  +     G+ 
Sbjct: 356 NAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGML 415

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            +  +++S   AC+ + AL  GKQVH++  K G   N +  ++L+ +Y K   +     +
Sbjct: 416 PSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQI 475

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +  K+ V +N+ +S   ++    E   +F  M      P+  ++ +++SAC+     
Sbjct: 476 FDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQG 531

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
            +    F  M+ +   LPN    + ++ + G  G
Sbjct: 532 NEAVEIFRSMLHERE-LPNPPILTILLGLSGNLG 564



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 38/314 (12%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE-------- 93
           +C+   A   GK  H+  +  G   ++   N LI  Y K   I   R++FD         
Sbjct: 427 ACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS 486

Query: 94  -----------------------MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
                                  MP   +VSW TII +     +  EAV +F +ML E +
Sbjct: 487 YNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERE 546

Query: 131 TPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
            P     + ++L   +      +  +Q+H  A+K  MD  + V  AL+ +Y KC   +D+
Sbjct: 547 LPNP--PILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCS-SADS 603

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            +VF+SM ER+  TW++++ G+ Q+ L  EA+ +++     G+  N+ T   ++ AC+  
Sbjct: 604 LKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHS 663

Query: 250 AALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNT 307
             + +G Q    +    G    +   + +VD+  + G V  A +F++    E + V+W+ 
Sbjct: 664 GLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSA 723

Query: 308 MISGFSRHARSVEV 321
           ++     H ++VE+
Sbjct: 724 LLGACKIH-KNVEI 736


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 342/610 (56%), Gaps = 54/610 (8%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++ ++  A   G   H     +    D       ++ Y+ CG I+ AR VFDEM  R +
Sbjct: 118 LKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDV 177

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA------KRDVFE 153
           V+WNT+I  Y   G   EA  LF  M      P  E  + +++ AC         R ++E
Sbjct: 178 VTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYNRAIYE 236

Query: 154 --------------CKQLHVFALKAAMD-----------RNVFVGTALLDVYAKCGLISD 188
                            + ++A    MD           RN+FV TA++  Y+KCG + D
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  +F+   +++ V W++M++ +V+++  +EAL +F      G++ +  ++ SVI ACA 
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L  L + K VH+ +   G  S +   ++L++MYAKCG +     VF  +  +NVV W++M
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+  S H  + + + LF +M+Q  + PNE T++ VL  CSH G+VE+GK  F  M  ++N
Sbjct: 417 INALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYN 476

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           + P + HY CM+D+ GRA L+ EA ++I +MP  +   +WGSL+++CR +  LEL + AA
Sbjct: 477 ITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAA 536

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK---- 484
           K++  +EPD+ G  +L+SNIYA  +RWE+V   R+++ +  V KEK  S ++  GK    
Sbjct: 537 KRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEF 596

Query: 485 ----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
               + H +  EIY+KL+++V ++K  GY P+    L DVE+  K++L++ HSEKLAL F
Sbjct: 597 LIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCF 656

Query: 541 GLM----------CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           GLM          C   GV IRI+KNLR+C DCH F K  S++  RE IVRD  RFH + 
Sbjct: 657 GLMNEEKEEEKDSC---GV-IRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYK 712

Query: 591 NGSCSCWDFW 600
           NG CSC D+W
Sbjct: 713 NGLCSCRDYW 722



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 155/329 (47%), Gaps = 33/329 (10%)

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
           E  A  LF   +R       +F+   +L A +    +FE  +LH  A K A   + FV T
Sbjct: 91  EPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVET 150

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
             +D+YA CG I+ A  VF+ M  R+ VTW++M+  + +  L +EA  LF   +   +  
Sbjct: 151 GFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMP 210

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKT-----------------GFG--------- 268
           ++  + +++ AC     +   + ++  L +                  G G         
Sbjct: 211 DEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFF 270

Query: 269 -----SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
                 N+F ++++V  Y+KCG + DA  +F   E+K++V W TMIS +       E + 
Sbjct: 271 RKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALR 330

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           +FE+M  +G+ P+  +  SV+SAC+++G+++K K +    +  + +   +   + +I++ 
Sbjct: 331 VFEEMCCSGIKPDVVSMFSVISACANLGILDKAK-WVHSCIHVNGLESELSINNALINMY 389

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLL 412
            + G +    D+   MP     S W S++
Sbjct: 390 AKCGGLDATRDVFEKMPRRNVVS-WSSMI 417



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 13/186 (6%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ ++ + + +CA      + K  H+ I   GL ++   +N LIN Y+KCG +   R VF
Sbjct: 343 DVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVF 402

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           ++MP+R +VSW+++I + + +G   +A++LF  M +E   P +E T   VL  C+    V
Sbjct: 403 EKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEP-NEVTFVGVLYGCSHSGLV 461

Query: 152 FECKQLHVFALKAAMDRNVFVGTAL------LDVYAKCGLISDASRVFESMP-ERNEVTW 204
            E K++      A+M     +   L      +D++ +  L+ +A  V ESMP   N V W
Sbjct: 462 EEGKKIF-----ASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516

Query: 205 SSMVAG 210
            S+++ 
Sbjct: 517 GSLMSA 522


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/548 (39%), Positives = 328/548 (59%), Gaps = 13/548 (2%)

Query: 65  NNDTLTSNILINFYSKC--GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           + D  + N L+    +   GL S AR +FD MP+R   SW+ I+ ++  +G+ + A+A++
Sbjct: 89  STDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIY 147

Query: 123 INMLRE--GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
             MLRE  G    +EFT SS L A  A R     ++LH   ++  +D +  V +AL D+Y
Sbjct: 148 RRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMY 207

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           AK G + DA  VF+ MP R+ V+W++M+  +       E   LF R    G+  N+FT +
Sbjct: 208 AKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYA 267

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
            V+ ACA   +   GKQVH  + K+  G + FA S+LV MY+K G +  A  VF G+ + 
Sbjct: 268 GVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKP 327

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++V W  MISG++++ +  E +  F+ +  +G  P+  T++ VLSAC+H G+V+KG   F
Sbjct: 328 DLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIF 387

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             +  ++ +     HY+C+ID+L R+GL   A D+I  MP      +W SLL  CR ++N
Sbjct: 388 HSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKN 447

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           + LA  AA+ LF +EP+N   ++ L+NIYA+   ++EV   R+ +    + K  + SW+E
Sbjct: 448 VRLAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIE 507

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           +         G ++HP+  EIY+ L+KL  +M++ GY  +T   LHDVED +KQ+ + +H
Sbjct: 508 VGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYH 567

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SE+LA+ FG++    G PI++ KNLRICGDCH+ +K  S+I  RE IVRD NRFHHF NG
Sbjct: 568 SERLAVAFGIIATPKGSPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNG 627

Query: 593 SCSCWDFW 600
           SCSC D+W
Sbjct: 628 SCSCRDYW 635



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 158/311 (50%), Gaps = 14/311 (4%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++  G++ D +  + L + Y+K G +  AR VFD MP R +VSW  ++  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFD 240

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            GR+ E   LF+ M+R G  P +EFT + VL ACA        KQ+H    K+    + F
Sbjct: 241 AGRDGEGFRLFVRMMRSGILP-NEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCF 299

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
            G+AL+ +Y+K G +  A RVF  MP+ + V+W++M++G+ QN   +EAL  F      G
Sbjct: 300 AGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSG 359

Query: 232 LEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
              +  T   V+ ACA    + +G  + H++  K G        + ++D+ ++ G    A
Sbjct: 360 FRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERA 419

Query: 291 YFVFSGIEEK-NVVLWNTMISGFSRHARSVEVM-----ILFEKMQQAGLHPNEQTYISVL 344
             + + +  K N  LW +++ G   H ++V +       LFE   +     N  TY+++ 
Sbjct: 420 EDMINTMPVKPNKFLWASLLGGCRIH-KNVRLAWWAAEALFEIEPE-----NPATYVTLA 473

Query: 345 SACSHIGMVEK 355
           +  + +G+ ++
Sbjct: 474 NIYASVGLFDE 484


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 336/563 (59%), Gaps = 24/563 (4%)

Query: 58  KIIGMGLNNDTLTSNI-----LINFYSKCGLISGARKVFDEMPQRCIVS---WNTIIGSY 109
           KI  + LNN +L  N      LI  +S C  +  ARK+FD++    +++   W  +   Y
Sbjct: 159 KICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGY 218

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           + NG  ++A+ ++++ML     P   F++S  L AC   +D+   + +H   +K     +
Sbjct: 219 SRNGSPRDALIVYVDMLCSFIEP-GNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVD 277

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
             V   LL +Y + GL  DA +VF+ M ERN VTW+S+++   +     E   LFR+ Q 
Sbjct: 278 QVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQE 337

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             + ++  T+++++ AC+ +AAL+ GK++HA + K+    ++   +SL+DMY KCG V  
Sbjct: 338 EMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEY 397

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           +  VF  +  K++  WN M++ ++ +    EV+ LFE M ++G+ P+  T++++LS CS 
Sbjct: 398 SRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSD 457

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+ E G S F+ M  +  V P + HY+C++DILGRAG I EA  +I  MPF  +AS+WG
Sbjct: 458 TGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWG 517

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLL SCR + N+ + EIAAK+LF +EP N GN++++SNIYA  + W+ V + R++++   
Sbjct: 518 SLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRG 577

Query: 470 VKKEKSKSWVEIKGK------------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517
           VKKE   SWV++K K            RN     +++++L++ +E   K GY P T   L
Sbjct: 578 VKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIE---KSGYSPNTSVVL 634

Query: 518 HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRE 577
           HDV++  K   +  HSE+LA T+ L+    GVPIRI KNLR+C DCHS+MK  S++  R 
Sbjct: 635 HDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRV 694

Query: 578 TIVRDLNRFHHFTNGSCSCWDFW 600
            ++RD  RFHHF +G CSC D+W
Sbjct: 695 IVLRDTKRFHHFVDGICSCKDYW 717


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 349/616 (56%), Gaps = 58/616 (9%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS--KCGLISGARKVFDEMP 95
           +  Q+C+   AP   +  HA  +   + N    S+ L+  YS  K   +  AR +FD + 
Sbjct: 21  SLFQTCS---APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQ 77

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R ++ WNTII  Y  N    + + LF  ++ E   P   FT+  V+  CA    V E K
Sbjct: 78  RRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE-YLP-DNFTLPCVIKGCARLGVVQEGK 135

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-----------NEVTW 204
           Q+H  ALK     +VFV  +L+++Y+KCG I  A +VF+ M ++           N V+W
Sbjct: 136 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSW 195

Query: 205 SSMVAGFVQNELYEEALILFRRAQVL----------GLEYN-QF---------------- 237
           ++M+ G++++  ++ AL LF +  +           G E N QF                
Sbjct: 196 NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR 255

Query: 238 ----TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
               T+ SV+ A +GLA L +G+ +H+ + K GF  +    +SL++MYAKCGC+  A  V
Sbjct: 256 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTV 315

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  I++K V  W  +I G   H  +   + LF +M + GL PN   +I VL+AC+H G+V
Sbjct: 316 FRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLV 375

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           + G+ YFD+M+ ++ + P + HY C++DIL RAG + EA + I NMP      +W SLL 
Sbjct: 376 DDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLG 435

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
             RN+  +++ E AA+++  + P+  G ++LLSN+YAA+  WE+V+  R+++     +K+
Sbjct: 436 GSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKD 495

Query: 474 KSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
              S VE        I G  +HP+  EIY+K+ ++ E++K +G+ P+T   L  +E  ++
Sbjct: 496 PGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKE 555

Query: 526 QEL-LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           +E  L +HSE+LA+ FGL+ + PG+PIRIMKNLR+C DCHS  K  S+I  RE IVRD  
Sbjct: 556 KEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNC 615

Query: 585 RFHHFTNGSCSCWDFW 600
           RFHHF NGSCSC D+W
Sbjct: 616 RFHHFKNGSCSCMDYW 631



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 141/336 (41%), Gaps = 63/336 (18%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           TL   ++ CAR      GK  H   + +G  +D      L+N YSKCG I  ARKVFD  
Sbjct: 117 TLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGM 176

Query: 93  ----------------------------------------EMPQRCIVSWNTIIGSYTTN 112
                                                   +MP   +V+WN +I  Y  N
Sbjct: 177 IDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELN 236

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G+  +AV +F  ML+ G  P S  T+ SVL A +    + + + +H +  K   + +  +
Sbjct: 237 GQFMDAVKMFFMMLKLGSRP-SHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGIL 295

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           GT+L+++YAKCG I  A  VF ++ ++    W++++ G   + +   AL LF      GL
Sbjct: 296 GTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGL 355

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           + N      V+ AC     +  G+Q   ++       N +     ++ Y   GC+VD   
Sbjct: 356 KPNAIIFIGVLNACNHAGLVDDGRQYFDMM------MNEYKIEPTLEHY---GCLVDILC 406

Query: 293 VFSGIEE-----------KNVVLWNTMISGFSRHAR 317
               +EE            N V+W +++ G   H +
Sbjct: 407 RAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 442



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + L + +      +G+  H+ +   G   D +    LI  Y+KCG I  A  VF  
Sbjct: 259 ATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRA 318

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ +  W  II     +G    A+ALF+ M + G  P +   +  VL AC     V +
Sbjct: 319 IQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFI-GVLNACNHAGLVDD 377

Query: 154 CKQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
            +Q     ++ + ++  ++        L+D+  + G + +A    E+MP   N+V W S+
Sbjct: 378 GRQYFDMMMNEYKIEPTLEHY----GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSL 433

Query: 208 VAG 210
           + G
Sbjct: 434 LGG 436


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/622 (36%), Positives = 334/622 (53%), Gaps = 58/622 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L  CA       GK  H   +   +  +    N L++ Y+KCG++  A  VF  M
Sbjct: 231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNM 290

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALF-------------------------------- 122
             + +VSWN ++  Y+  GR ++AV LF                                
Sbjct: 291 SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 123 ---INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD--------RNVF 171
                ML  G  P +E T+ SVL  CA+   +   K++H +A+K  +D         N+ 
Sbjct: 351 GVCRQMLSSGIKP-NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409

Query: 172 VGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRR--A 227
           +   L+D+YAKC  +  A  +F+S+   ER+ VTW+ M+ G+ Q+    +AL L      
Sbjct: 410 I-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS-NMFAASSLVDMYAKCGC 286
           +      N FTIS  + ACA LAAL  GKQ+HA   +    +  +F ++ L+DMYAKCG 
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGS 528

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + DA  VF  +  KN V W ++++G+  H    E + +F++M++ G   +  T + VL A
Sbjct: 529 ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CSH GM+++G  YF+ M     V P   HY+C++D+LGRAG ++ A  LI  MP +    
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +W + L+ CR +  +EL E AA+++  +  ++ G++ LLSN+YA   RW++V R R L+R
Sbjct: 649 VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMR 708

Query: 467 DSEVKKEKSKSWVE-IK-------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
              VKK    SWVE IK       G + HP   EIY  L   ++ +K +GY PET   LH
Sbjct: 709 HKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALH 768

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           DV+D  K +LL  HSEKLAL +G++    G  IRI KNLR+CGDCH+   + SRI   + 
Sbjct: 769 DVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDI 828

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           I+RD +RFHHF NGSCSC  +W
Sbjct: 829 ILRDSSRFHHFKNGSCSCKGYW 850



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 212/427 (49%), Gaps = 51/427 (11%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           T     ++C  E + VR G+  HA  +  G  ++    N L+  YS+C  +S ARKVFDE
Sbjct: 129 TFPFVFKACG-EISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDE 187

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M    +VSWN+II SY   G+ + A+ +F  M  E        T+ +VL  CA+      
Sbjct: 188 MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSL 247

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQLH FA+ + M +N+FVG  L+D+YAKCG++ +A+ VF +M  ++ V+W++MVAG+ Q
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQ 307

Query: 214 NELYEEALILFRRAQ-----------------------------------VLGLEYNQFT 238
              +E+A+ LF + Q                                     G++ N+ T
Sbjct: 308 IGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVT 367

Query: 239 ISSVICACAGLAALIQGKQVHAV-------LCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           + SV+  CA + AL+ GK++H         L K G G      + L+DMYAKC  V  A 
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427

Query: 292 FVFSGI--EEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAGLHPNEQTYISVLSAC 347
            +F  +  +E++VV W  MI G+S+H  + + + L  +M  +     PN  T    L AC
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487

Query: 348 SHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           + +  +  GK      ++ Q N +P +F  +C+ID+  + G I +A  +  NM       
Sbjct: 488 ASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEV 545

Query: 407 MWGSLLA 413
            W SL+ 
Sbjct: 546 TWTSLMT 552



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 165/343 (48%), Gaps = 40/343 (11%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR--CIVSWNTIIGSYT 110
           K+ H K++  G+    LTS+ LI+ Y   G +S A  +    P     +  WN++I SY 
Sbjct: 45  KLIHQKLLSFGILTLNLTSH-LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            NG   + + LF  M     TP   +T   V  AC     V   +  H  +L      NV
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTP-DNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNV 162

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR-AQV 229
           FVG AL+ +Y++C  +SDA +VF+ M   + V+W+S++  + +    + AL +F R    
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE 222

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G   +  T+ +V+  CA L     GKQ+H     +    NMF  + LVDMYAKCG + +
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDE 282

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ------------------- 330
           A  VFS +  K+VV WN M++G+S+  R  + + LFEKMQ+                   
Sbjct: 283 ANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342

Query: 331 ----------------AGLHPNEQTYISVLSACSHIGMVEKGK 357
                           +G+ PNE T ISVLS C+ +G +  GK
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 5/241 (2%)

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           L+  Y   G +S A  +    P  +     W+S++  +  N    + L LF     L   
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            + +T   V  AC  ++++  G+  HA+   TGF SN+F  ++LV MY++C  + DA  V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGM 352
           F  +   +VV WN++I  +++  +    + +F +M  + G  P+  T ++VL  C+ +G 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
              GK      V    ++ N+F  +C++D+  + G++ EA  +  NM      S W +++
Sbjct: 245 HSLGKQLHCFAVTS-EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS-WNAMV 302

Query: 413 A 413
           A
Sbjct: 303 A 303



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 14/193 (7%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI--EEKNVVLWNTMISG 311
           Q K +H  L   G  + +   S L+  Y   GC+  A  +       +  V  WN++I  
Sbjct: 43  QVKLIHQKLLSFGILT-LNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRS 101

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           +  +  + + + LF  M      P+  T+  V  AC  I  V  G+S   L +     + 
Sbjct: 102 YGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVT-GFIS 160

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
           NVF  + ++ +  R   + +A  +   M      S W S++ S   Y  L   ++A +  
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVS-WNSIIES---YAKLGKPKVALEMF 216

Query: 432 ------FGMEPDN 438
                 FG  PDN
Sbjct: 217 SRMTNEFGCRPDN 229


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/502 (41%), Positives = 302/502 (60%), Gaps = 19/502 (3%)

Query: 108 SYTTNGREQEAVALFINMLREGKTPY-SEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
           SY + GR   +VALF      G+T   S F  ++++   A + DV   +QL         
Sbjct: 71  SYASLGRLDYSVALF------GRTQNPSVFFWTAIIHGHALRGDVVSAQQL----FDTMP 120

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           ++++   TA+L  YAK G +  A  +F+ M ER+ V W+ M+ G+ QN +  EAL+LFRR
Sbjct: 121 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 180

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
                 + N+ T+ SV+ AC  L AL  G+ VH+ +   G   N+   ++LVDMY+KCG 
Sbjct: 181 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 240

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + DA  VF  I++K+VV WN+MI G++ H  S E + LF+ M + GLHP   T+I +LSA
Sbjct: 241 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 300

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           C H G V +G   F+ M  ++ + P + HY CM+++LGRAG + +AY+L+ NM  +    
Sbjct: 301 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 360

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           +WG+LL +CR +  + L E   + L      N+G ++LLSNIYAA   W+ VAR R +++
Sbjct: 361 LWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMK 420

Query: 467 DSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
           DS VKKE   S +E+         G  NHP+  EIY  LE++   +K  GY P+T+  LH
Sbjct: 421 DSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLH 480

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           D+ ++ K+  L  HSEKLA+ FGL+   PG  I+I+KNLR+C DCH   K  S+I GR+ 
Sbjct: 481 DIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKI 540

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           +VRD NRFHHF NGSCSC D+W
Sbjct: 541 VVRDRNRFHHFVNGSCSCGDYW 562



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 5/295 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTS-NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           +RG V  A+ +   +   +L S   ++  Y+K G +  AR +FD M +R  V WN +I  
Sbjct: 105 LRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDG 164

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           YT NG   EA+ LF  ML+    P +E TV SVL AC     +   + +H +     +  
Sbjct: 165 YTQNGMPNEALVLFRRMLKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQF 223

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           NV VGTAL+D+Y+KCG + DA  VF+ + +++ V W+SM+ G+  +   +EAL LF+   
Sbjct: 224 NVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMC 283

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
            +GL     T   ++ AC     + +G  + + +  + G    +     +V++  + G V
Sbjct: 284 RMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHV 343

Query: 288 VDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
             AY +   +  E + VLW T++     H +      + E +    L  N  TYI
Sbjct: 344 EQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYI 397



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A A   E++ L + L +C +  A   G+  H+ I   G+  +      L++ YSKCG + 
Sbjct: 184 AKAKPNEVTVL-SVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 242

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            AR VFD++  + +V+WN++I  Y  +G  QEA+ LF +M R G  P +  T   +L AC
Sbjct: 243 DARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHP-TNITFIGILSAC 301

Query: 146 AAKR------DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-E 198
                     D+F  K    + ++  ++        ++++  + G +  A  + ++M  E
Sbjct: 302 GHSGWVTEGWDIFN-KMKDEYGIEPKIEHY----GCMVNLLGRAGHVEQAYELVKNMNIE 356

Query: 199 RNEVTWSSMVA 209
            + V W +++ 
Sbjct: 357 PDPVLWGTLLG 367



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 64/220 (29%)

Query: 257 QVHAVLCKTG---------------------------FG----SNMFAASSLVDMYAKCG 285
           Q+HAVL + G                           FG     ++F  ++++  +A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 286 CVVDAYFVF-------------------------------SGIEEKNVVLWNTMISGFSR 314
            VV A  +F                                G+EE++ V WN MI G+++
Sbjct: 108 DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQ 167

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           +    E ++LF +M +A   PNE T +SVLSAC  +G +E G+ +    ++ + +  NV 
Sbjct: 168 NGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR-WVHSYIENNGIQFNVH 226

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
             + ++D+  + G + +A  L+ +   D     W S++  
Sbjct: 227 VGTALVDMYSKCGSLEDAR-LVFDKIDDKDVVAWNSMIVG 265


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/596 (36%), Positives = 344/596 (57%), Gaps = 15/596 (2%)

Query: 19  SAIASASANANATELSTL--QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
           S     ++N+N   L +L  +  +    R R   +    HA++I  G + D      L+ 
Sbjct: 20  SPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLR 79

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
             SKC  I  A ++F       +  +  +I  + ++G   EA+ L+  ML E   P   +
Sbjct: 80  SCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILP-DNY 138

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            ++S+L AC ++  + E +++H  ALK     N  V   ++++Y KCG + DA RVFE M
Sbjct: 139 LMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEM 198

Query: 197 PE----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           PE    ++ V W++M+ GFV+NE    AL  FR  Q   +  N+FTI  V+ AC+ L AL
Sbjct: 199 PEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGAL 258

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             G+ VH+ + K     N+F  ++L++MY++CG + +A  VF  +++++V+ +NTMISG 
Sbjct: 259 EIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGL 318

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           S + +S + + LF  M    L P   T++ VL+ACSH G+V+ G   F  M + + V P 
Sbjct: 319 SMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQ 378

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           + HY CM+D+LGR G + EAYDLI  M       M G+LL++C+ ++NLEL E  AK+L 
Sbjct: 379 IEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELE 438

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GK 484
                ++G ++LLS++YA++ +W+E A+ R  ++++ ++KE   S +E+         G 
Sbjct: 439 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 498

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
             HP+   IY KLE+L   ++  GY PE E  L D+ED  K+  L  HSE+LA+ +GL+ 
Sbjct: 499 LRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLIS 558

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             P   IR+MKNLR+C DCHS +K  ++I  R+ +VRD NRFH+F NG+CSC D+W
Sbjct: 559 TEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 334/586 (56%), Gaps = 42/586 (7%)

Query: 56  HAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           H +++  GL  D + ++ L+ F      G ++ AR VFD + +     WNT+I  Y+ + 
Sbjct: 38  HGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSK 97

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
             +EA+ L+ +ML     P++ +T   +L AC++   + E +Q+H   +K      ++  
Sbjct: 98  EPEEALLLYHHMLYH-SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT 156

Query: 174 TALLDVYAK-------------------------------CGLISDASRVFESMPERNEV 202
            +LL+VY+K                               CG I  A  +F  MPERN +
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNII 216

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+SM++G V     +EAL LF R Q  G++ +   + S + ACA L  L QGK +HA +
Sbjct: 217 SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K     +      L+DMYAKCG + +A  VF  +EEK V +W  MISG++ H R  E +
Sbjct: 277 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 336

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
             F KMQ AG+ PN+ T+  +L+ACSH G+V + K  F+ M + H   P++ HY CM+D+
Sbjct: 337 EWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDL 396

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
           LGRAGL+ EA +LI NMP    A++WG+LL +C  + NLEL +   K L  ++P + G +
Sbjct: 397 LGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRY 456

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIY 494
           + L++I+AA   W + AR R+ +++  V K    S + +         G  +HP+I EI 
Sbjct: 457 IHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEID 516

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIM 554
             LE++VE +++ GYKP+    L D+ED  K+  + HHSEKLA+TFGL+   PG+ IRI+
Sbjct: 517 HMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIV 576

Query: 555 KNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KNLR+C DCH+ +K  S++  RE ++RD  RFH F +G+C+C D+W
Sbjct: 577 KNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 157/348 (45%), Gaps = 48/348 (13%)

Query: 2   KSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIG 61
           ++LL Y H  Y+         S   NA      T    L++C+   A    +  HA II 
Sbjct: 101 EALLLYHHMLYH---------SVPHNA-----YTFPFLLKACSSMSALEETQQIHAHIIK 146

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT---------- 111
           MG  ++  T+N L+N YSK G I  AR +FD++ QR  VSWN++I  YT           
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206

Query: 112 ---------------------NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
                                 G+ +EA+ LF  M   G        + S L ACA    
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAG-IKLDNVALVSTLQACADLGV 265

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + + K +H +  K  ++ +  +G  L+D+YAKCG + +A  VF  M E+    W++M++G
Sbjct: 266 LDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISG 325

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGS 269
           +  +    EAL  F + Q  G+E NQ T + ++ AC+    + + K +   + +  GF  
Sbjct: 326 YAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
           ++     +VD+  + G + +A  +   +  K N  +W  +++    H 
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 159/321 (49%), Gaps = 37/321 (11%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDASRVFESMPERNEVTWSSMVAG 210
           E +Q+H   LK  +  +    + LL   A    G ++ A  VF+ +   N   W++M+ G
Sbjct: 33  ELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRG 92

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +  ++  EEAL+L+       + +N +T   ++ AC+ ++AL + +Q+HA + K GFGS 
Sbjct: 93  YSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSE 152

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR---------------- 314
           ++  +SL+++Y+K G +  A  +F  +++++ V WN+MI G+++                
Sbjct: 153 IYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPE 212

Query: 315 ---------------HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
                            +  E + LF +MQ AG+  +    +S L AC+ +G++++GK +
Sbjct: 213 RNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK-W 271

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY- 418
               +K+H +  +      +ID+  + G + EA ++   M  +   S+W ++++    + 
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHG 330

Query: 419 RNLELAEIAAK-QLFGMEPDN 438
           R  E  E   K Q  G+EP+ 
Sbjct: 331 RGREALEWFMKMQTAGVEPNQ 351


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 339/586 (57%), Gaps = 10/586 (1%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           + S +  A E++ L A +  C  E      K  H   +      D L +N  +  Y+KCG
Sbjct: 370 AGSEDVKADEVTILNA-VPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCG 428

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            +S A++VF  +  + + SWN +IG Y  +   + ++   + M   G  P   FTV S+L
Sbjct: 429 SLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLP-DNFTVCSLL 487

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            AC+  + +   K++H F ++  ++R++FV  ++L +Y  CG +     +F++M + + V
Sbjct: 488 SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLV 547

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W++++ G +QN   E AL LFR+  + G++    ++ +V  AC+ L +L  G++ HA  
Sbjct: 548 SWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYA 607

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K     N F A S++DMYAK G +  +  VF+G++EK+   WN MI G+  H R+ E +
Sbjct: 608 LKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAI 667

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE+MQ+ G +P++ T++ VL+AC+H G++ +G  Y D M     + PN+ HY+C+ID+
Sbjct: 668 KLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDM 727

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
           LGRAG +  A  +   M  +    +W SLL+ CR ++NLE+ E  A +LF +EP+   N+
Sbjct: 728 LGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENY 787

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIY 494
           +LLSN+YA   +W++V + R+ +++  ++K+   SW+E+ GK        R      EI 
Sbjct: 788 VLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIK 847

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIM 554
           S    L  ++ K+GY+P+T    HD+ +  K E L  HSEKLA+T+GL+    G  +R+ 
Sbjct: 848 SLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVY 907

Query: 555 KNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KNLRIC DCH+  K  S++  RE +VRD  RFHHF  G CSC D+W
Sbjct: 908 KNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 192/382 (50%), Gaps = 3/382 (0%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++T+   L  CARER    GK  H   + + L+ + + +N L++ YSK G I  ++ +F
Sbjct: 275 DVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIF 334

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACAAKRD 150
                + +VSWNT++G ++  G       L   ML   +     E T+ + +  C  +  
Sbjct: 335 KLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESV 394

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K+LH ++LK     +  +  A +  YAKCG +S A RVF  +  +   +W++++ G
Sbjct: 395 LPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGG 454

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q+     +L    + +  GL  + FT+ S++ AC+ L +L  GK+VH  + +     +
Sbjct: 455 YAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 514

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F   S++ +Y  CG +     +F  +E+ ++V WNT+I+G  ++      + LF +M  
Sbjct: 515 LFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVL 574

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+ P   + ++V  ACS +  +  G+      +K H +  N F    +ID+  + G I 
Sbjct: 575 YGIQPCGISMMTVFGACSLLPSLRLGREAHAYALK-HLLEDNAFIACSIIDMYAKNGAIT 633

Query: 391 EAYDLILNMPFDATASMWGSLL 412
           ++   + N   + +A+ W +++
Sbjct: 634 QSSK-VFNGLKEKSAASWNAMI 654



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 153/314 (48%), Gaps = 18/314 (5%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIG-MGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           L   LQ+  + +    G+  H  + G   L +D +    +I  Y+ CG    +R  FD +
Sbjct: 87  LGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDAL 146

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +  WN +I SY+ N    E + +FI M+ +       FT   V+ ACA   DV   
Sbjct: 147 RSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIG 206

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             +H   +K  +  ++FVG AL+  Y   G +SDA ++F+ MPERN V+W+SM+  F  N
Sbjct: 207 LAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDN 266

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              ++   +   A          T+ +V+  CA    +  GK VH    K      +   
Sbjct: 267 G--DDGAFMPDVA----------TVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVN 314

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ--AG 332
           ++L+DMY+K GC++D+  +F     KNVV WNTM+ GFS      ++   F+ ++Q  AG
Sbjct: 315 NALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEG---DIHGTFDLLRQMLAG 371

Query: 333 LHPNEQTYISVLSA 346
               +   +++L+A
Sbjct: 372 SEDVKADEVTILNA 385


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/500 (38%), Positives = 314/500 (62%), Gaps = 9/500 (1%)

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           Y      ++A+ LF  + + G+    + T+++   AC     + + KQ+H  A+KA  D 
Sbjct: 5   YIIGNDGKKALELFSLIHKSGEKS-DQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 63

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           ++ V + +LD+Y KCG + +A  VF  +   ++V W+SM++G V N   ++AL ++ R +
Sbjct: 64  DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 123

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
              +  +++T +++I A + + AL QG+Q+HA + K    S+ F  +SLVDMYAKCG + 
Sbjct: 124 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 183

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           DAY +F  +  +N+ LWN M+ G ++H  + E + LF+ M+  G+ P+  ++I +LSACS
Sbjct: 184 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 243

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
           H G+  +   Y   M   + + P + HYSC++D LGRAGL+ EA  +I  MPF A+AS+ 
Sbjct: 244 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 303

Query: 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468
            +LL +CR   ++E  +  A +LF +EP ++  ++LLSNIYAA  RW++V  ARK+++  
Sbjct: 304 RALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 363

Query: 469 EVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDV 520
            VKK+   SW+++K          R+HP+   IY K+E++++ +++ GY P+TE  L DV
Sbjct: 364 NVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDV 423

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           ED  K+  L +HSEKLA+ +GL+       IR++KNLR+CGDCH+ +K+ S++  RE ++
Sbjct: 424 EDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVL 483

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD NRFHHF +G CSC D+W
Sbjct: 484 RDANRFHHFRDGVCSCGDYW 503



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 145/288 (50%), Gaps = 4/288 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL    ++C       +GK  HA  I  G ++D   ++ +++ Y KCG +  A  VF+ +
Sbjct: 32  TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 91

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
                V+W ++I     NG E +A+ ++  M R+ +    E+T ++++ A +    + + 
Sbjct: 92  SAPDDVAWTSMISGCVDNGNEDQALRIYHRM-RQSRVMPDEYTFATLIKASSCVTALEQG 150

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +QLH   +K     + FVGT+L+D+YAKCG I DA R+F+ M  RN   W++M+ G  Q+
Sbjct: 151 RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 210

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSNMF 272
              EEA+ LF+  +  G+E ++ +   ++ AC  AGL +    + +H++    G    + 
Sbjct: 211 GNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAY-EYLHSMPNDYGIEPEIE 269

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
             S LVD   + G V +A  V   +  K     N  + G  R    VE
Sbjct: 270 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVE 317



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 4/233 (1%)

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+ G++     ++AL LF      G + +Q T+++   AC  L  L QGKQ+HA   K G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           F S++   S ++DMY KCG +V+A  VF+ I   + V W +MISG   +    + + ++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M+Q+ + P+E T+ +++ A S +  +E+G+     ++K  + + + F  + ++D+  + 
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKL-DCVSDPFVGTSLVDMYAKC 179

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL--FGMEPD 437
           G I +AY L   M     A +W ++L     + N E A    K +   G+EPD
Sbjct: 180 GNIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPD 231


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/606 (34%), Positives = 336/606 (55%), Gaps = 59/606 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  H++ I  G+  + +  N +++F    + G +  AR++FD +P+  + SWN +   Y+
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
                +  V+L++ ML     P   +T   +         +   ++LH   +K  +D NV
Sbjct: 91  RIACPKLGVSLYLEMLERNVKP-DCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNV 149

Query: 171 FVGTALLDVYAKCGLIS------------------------------------------- 187
           F   AL+++Y+ CGLI                                            
Sbjct: 150 FAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVN 209

Query: 188 ----DASR-VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
               DA+R  F  MPER+ V+W++M+ G+++   Y+EAL+LFR  Q   ++ ++FT+ SV
Sbjct: 210 TGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSV 269

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + ACA L AL  G+ +   + K    ++ F  ++L+DMY KCG V  A  +F+ + +++ 
Sbjct: 270 LTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDK 329

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
             W  M+ G + +    E + +F +M +A + P+E TY+ VLSAC+H GMV++GK +F  
Sbjct: 330 FTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFAS 389

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M  +H + PN+ HY CM+D+LG+AG + EA+++I NMP    + +WG+LL +CR +++ E
Sbjct: 390 MTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAE 449

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-- 480
           +AE A +Q+  +EP+N   ++L  NIYAA  +W+++   R+++ D  +KK    S +E  
Sbjct: 450 MAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMN 509

Query: 481 ------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
                 + G ++HP+  EIY KL K+  ++K  GY P T     D+ +  K+  +  HSE
Sbjct: 510 GIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSE 569

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           KLA+ FGL+   PGV IRI+KNLR+C DCH   K  S++  RE IVRD  RFHHF +GSC
Sbjct: 570 KLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSC 629

Query: 595 SCWDFW 600
           SC D+W
Sbjct: 630 SCKDYW 635



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 139/314 (44%), Gaps = 51/314 (16%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD------------------- 92
           G+  H  ++  GL+++    N LIN YS CGLI  AR +FD                   
Sbjct: 133 GRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNR 192

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        +MP+R  VSW  +I  Y      +EA+ LF 
Sbjct: 193 IKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFR 252

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M +  K    EFT+ SVL ACA    +   + +  +  K  +  + FVG AL+D+Y KC
Sbjct: 253 EM-QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKC 311

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +F ++P+R++ TW++MV G   N   EEAL +F +     +  ++ T   V+
Sbjct: 312 GNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVL 371

Query: 244 CACAGLAALIQGKQVHAVL-CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-N 301
            AC     + +GK+  A +  + G   N+     +VD+  K G + +A+ +   +  K N
Sbjct: 372 SACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPN 431

Query: 302 VVLWNTMISGFSRH 315
            ++W  ++     H
Sbjct: 432 SIVWGALLGACRIH 445



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 152/348 (43%), Gaps = 58/348 (16%)

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
            I+M     +P +E    S+   C   + ++  KQ+H   +K  +  N  +   +L    
Sbjct: 1   MISMACSQSSPVTENPPLSLFETC---KSMYHLKQIHSRTIKTGIICNPIIQNKILSFCC 57

Query: 182 --KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
             + G +  A ++F+++PE +  +W+ M  G+ +    +  + L+       ++ + +T 
Sbjct: 58  SREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTY 117

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
             +        AL  G+++H  + K G  SN+FA ++L++MY+ CG +  A  +F    +
Sbjct: 118 PFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCK 177

Query: 300 KNVVLWNTMISGFSRHARSV---------------------------------------- 319
            +VV WN MISG++R  + V                                        
Sbjct: 178 SDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDG 237

Query: 320 --------EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
                   E ++LF +MQ + + P+E T +SVL+AC+ +G +E G+ +    + ++ V  
Sbjct: 238 YLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGE-WIRTYIDKNKVKN 296

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMP----FDATASMWGSLLASC 415
           + F  + +ID+  + G +  A  +   +P    F  TA + G  +  C
Sbjct: 297 DTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGC 344



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 15/233 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA+  A   G+     I    + NDT   N LI+ Y KCG +  A  +F+ +
Sbjct: 265 TMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTL 324

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           PQR   +W  ++     NG  +EA+ +F  ML+   TP  E T   VL AC     V E 
Sbjct: 325 PQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP-DEVTYVGVLSACTHTGMVDEG 383

Query: 155 KQLHV-FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG-- 210
           K+       +  ++ N+     ++D+  K G + +A  + ++MP + N + W +++    
Sbjct: 384 KKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACR 443

Query: 211 -FVQNELYEEALILFRRAQVLGLEYNQFTISSVIC----ACAGLAALIQGKQV 258
                E+ E A+      Q+L LE N   +  + C    AC     L + +QV
Sbjct: 444 IHKDAEMAERAI-----EQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQV 491


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 343/601 (57%), Gaps = 47/601 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +C+  R   R    HA ++  GL++D   +  L   Y+  G +  +  +         
Sbjct: 31  LAACSTAR---RASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTT 87

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           + + + I ++++ G     +AL  +ML EG  P +  T+S+ L AC   R +   + LH 
Sbjct: 88  IFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLP-TAHTLSASLPAC---RGLSLGRALHA 143

Query: 160 FALKAAMDRNVFVGTALLDVY-------------------------------AKCGLISD 188
           +A K A+  + +V TALL +Y                               A  G + D
Sbjct: 144 YAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDD 203

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A R+F+ +P ++ + W++M+ G+ Q+    EAL LFRR      E ++ T+  V+ A A 
Sbjct: 204 ARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQ 263

Query: 249 LAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           L  +  GK +H+ +  +     N+  A++LVDMY KCG + DA  VF GI  K++V+WN 
Sbjct: 264 LGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNA 323

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           MI+G++ H  S + + +F +++  GL P + T+I +L+ACSH G+VE+G+S+F  M  ++
Sbjct: 324 MINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEY 383

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            + P + HY CM+D+LGRAGLI EA+ L+ ++     A MW SLLA+CR ++N+ L +  
Sbjct: 384 GIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRI 443

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK----- 482
           A  L      N+G ++LLSNIYAA  +WEEVAR R +++ S ++KE   S +EI      
Sbjct: 444 ADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYE 503

Query: 483 ---GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
              G  +HP   EIY+ L+K+   +K+ G+ P+TE  LHD++++ K++ L  HSEKLA+ 
Sbjct: 504 FVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVA 563

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+   PG  I+I+KNLR C DCH+ +K  S+I  R+ + RD NRFHHF +GSC+C D+
Sbjct: 564 FGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDY 623

Query: 600 W 600
           W
Sbjct: 624 W 624



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 144/315 (45%), Gaps = 38/315 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL A+L +C   R    G+  HA    + L+ D+  +  L++ Y++ G  + AR +FDEM
Sbjct: 124 TLSASLPAC---RGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEM 180

Query: 95  PQRCIVS-------------------------------WNTIIGSYTTNGREQEAVALFI 123
           P   +VS                               WN +I  YT +G+  EA+ LF 
Sbjct: 181 PDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFR 240

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AMDRNVFVGTALLDVYAK 182
            MLR    P  E TV  VL A A    V   K LH +   +  +  NV V TAL+D+Y K
Sbjct: 241 RMLRSSAEP-DEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCK 299

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG + DA  VF  +  ++ V W++M+ G+  +    +AL +F + +  GL     T   +
Sbjct: 300 CGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGL 359

Query: 243 ICACAGLAALIQGKQ-VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EK 300
           + AC+    + +G+    ++  + G    +     +VD+  + G + +A+ +   +    
Sbjct: 360 LNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITP 419

Query: 301 NVVLWNTMISGFSRH 315
           + V+W ++++    H
Sbjct: 420 DAVMWVSLLAACRLH 434



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 37/285 (12%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           +S+L AC+  R      +LH   ++  +D +  V   L   YA  G +  +  +     +
Sbjct: 28  ASLLAACSTAR---RASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKD 84

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
              + ++S +       L+   L L       GL     T+S+ + AC GL+    G+ +
Sbjct: 85  PTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSL---GRAL 141

Query: 259 HAVLCKTGFGSNMFAASSLVDM-------------------------------YAKCGCV 287
           HA   K     + + A++L+ M                               YA  G +
Sbjct: 142 HAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGAL 201

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            DA  +F G+  K+ + WN MI G+++H +  E + LF +M ++   P+E T + VLSA 
Sbjct: 202 DDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAV 261

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + +G VE GK     +     V  NV   + ++D+  + G + +A
Sbjct: 262 AQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDA 306


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/589 (39%), Positives = 342/589 (58%), Gaps = 43/589 (7%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGS 108
           RG   H  ++  G    T   N +++ YS C  + GA +VF+ +P  QR +VSWN++I  
Sbjct: 183 RGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISG 242

Query: 109 YTTNGREQEAVALFINMLREGKTPY--SEFTVSSVLCACAAKRDVFECKQLHVF------ 160
           +  NG  + A+  F +M+ EG +    +  TV ++L +CA    V     +H +      
Sbjct: 243 FXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHS 302

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           +L  A D  V V TALLD++A+CG ++ A  +F+ +  +N V WS+M+AG+ Q    EEA
Sbjct: 303 SLLVAKD--VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEA 360

Query: 221 LILFRR----AQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           L LFR+      ++G+E   N  T+ SVI AC+ L A      +H     TG   +   A
Sbjct: 361 LRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIA 420

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           S+L+DM AKCG +     VFS ++E  + VV W++MI     H      + LF +M+  G
Sbjct: 421 SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGG 480

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             PNE TYISVLSACSH G+VE+GKS F+ M K + + P   HY+C++D+LGRAG + EA
Sbjct: 481 YEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEA 540

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           +++ILNMP  A  ++WGSLLA+C  + N +L EI  K++  ++ ++ G+H+LL+N+Y   
Sbjct: 541 HNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDA 600

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
            RW++V R R  +R S ++K   +S++EI  +        R+HP    IY +L+ L E +
Sbjct: 601 GRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERV 660

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLI---HHSEKLALTFGLM-------CLCP---GVPI 551
           +K   K  TE  L +VED     L+    +HSE+LA+ FGL+       C C      PI
Sbjct: 661 RKAA-KYVTETGL-NVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPI 718

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RI KNLR+C DCH++ K  S++  RE IVRD +RFHHF +G CSC D+W
Sbjct: 719 RITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 204/438 (46%), Gaps = 42/438 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L++CA  R  +     HA +  +GL  D  ++  L++ Y KCG    A +VFDEM
Sbjct: 54  TFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEM 113

Query: 95  PQRC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE------FTVSSVLCACA 146
           P+    +VSW  +I +Y++NG   EA   F  M        SE       ++ +++ ACA
Sbjct: 114 PEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA 173

Query: 147 ---AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNE 201
                  +     +H   +K     +  +G +++ +Y+ C  +  A RVF  +P  +R+ 
Sbjct: 174 VGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDV 233

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLG---LEYNQFTISSVICACAGLAALIQGKQV 258
           V+W+S+++GF  N   E AL  F      G   +E N+ T+ +++ +CA L  +     V
Sbjct: 234 VSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293

Query: 259 HAVLCKTG----FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           H  +           ++   ++L+DM+A+CG +  A  +F G+E KNVV W+ MI+G+ +
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353

Query: 315 HARSVEVMILFEKMQQAG------LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
            +   E + LF +M   G      + PN  T +SV++ACS +G           M+ ++ 
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSAS-----MIHKYA 408

Query: 369 VLPNVFH----YSCMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLAS----CRNYR 419
           V   +       S +ID+  + G I     +   M     T   W S++ +        R
Sbjct: 409 VATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKR 468

Query: 420 NLELAEIAAKQLFGMEPD 437
            LEL   +  +  G EP+
Sbjct: 469 ALEL--FSEMRTGGYEPN 484



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 163/316 (51%), Gaps = 25/316 (7%)

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           WN++I    T    Q A+  F  M +    P + FT  ++L ACAA R +    Q+H + 
Sbjct: 21  WNSLIAKNATQ-NPQTALTFFTRM-QAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYL 78

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER--NEVTWSSMVAGFVQNELYEE 219
            +  +  + F   AL+D Y KCG    A++VF+ MPE   + V+W+++++ +  N   +E
Sbjct: 79  TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDE 138

Query: 220 ALILFRRAQVL----GLE---YNQFTISSVICACA---GLAALIQGKQVHAVLCKTGFGS 269
           A   F R + +    G E    +  ++ +++ ACA   G   L +G  VH ++ K GFG 
Sbjct: 139 AFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGV 198

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSG--IEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
           +    +S+V MY+ C  V  A+ VF+G  IE+++VV WN++ISGF  +  +   +  FE 
Sbjct: 199 STHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFED 258

Query: 328 MQQAG---LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN---VLPNVFHYSCMID 381
           M   G   + PN  T I++L +C+ +G VE      + +  +H+   V  +V   + ++D
Sbjct: 259 MVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLD 318

Query: 382 ILGRAG---LIHEAYD 394
           +  R G   L  E +D
Sbjct: 319 MHARCGNLALAREIFD 334



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 195 SMPERNEVTWSSMVA-GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           S+  ++   W+S++A    QN   + AL  F R Q   +  N FT  +++ ACA L  L+
Sbjct: 12  SISHKDTFHWNSLIAKNATQNP--QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK--NVVLWNTMISG 311
              QVHA L + G  ++ F+A++LVD Y KCG    A  VF  + E   +VV W  +IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 312 FSRHARSVEVMILFEKMQ 329
           +S +    E    F +M+
Sbjct: 130 YSSNGCVDEAFXAFGRMR 147


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/553 (37%), Positives = 327/553 (59%), Gaps = 23/553 (4%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA+++  GL  D  +++ LI     S    +  A++VFD++P   + +WNT+I +Y 
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           ++    +++ +F+ ML +      +FT   ++ A +   ++F  K  H   +K  +  +V
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDV 171

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F+  +L+  YAKCG +    RVF + P R+ V+W+SM+  FVQ    EEAL LF+  +  
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            ++ N  T+  V+ ACA  +    G+ VH+ + +     ++  +++++DMY KCG V DA
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDA 291

Query: 291 YFVFSGIEEKNVVLWNTMISGFSR------------HARSVEVMILFEKMQQAGLHPNEQ 338
             +F  + EK++V W TM+ G+++            H    + + LF KMQ+  + PN  
Sbjct: 292 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAV 351

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+ ++L ACSH+G+VE+G+++F+ M   + VLP V HY+CM+DILGRAGL+ EA +LI  
Sbjct: 352 TFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 411

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP    AS+WG+LL +C  + N+ LAE A  QL  +EP N G ++LLSNIYA   +W+ V
Sbjct: 412 MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRV 471

Query: 459 ARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYK 510
           +  RKL+RD  +KKE   S +E+         G  +HP   +IY+KL+++V  ++ +GY 
Sbjct: 472 SGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYV 531

Query: 511 PETEHDLHDVEDSR-KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
           P   H L  VE+   K++ L  HSEKLA+ FGL+      PIRI+KNLR+CGDCHS  K 
Sbjct: 532 PNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKL 591

Query: 570 ASRIAGRETIVRD 582
            S++  RE ++RD
Sbjct: 592 VSKLYDREILLRD 604



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 46/309 (14%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H  +I + L +D    N LI+FY+KCG +    +VF   P+R +VSWN++I ++  
Sbjct: 155 GKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQ 214

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G  +EA+ LF  M  +   P +  T+  VL ACA K D    + +H +  +  +  ++ 
Sbjct: 215 GGCPEEALELFQEMETQNVKP-NGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLT 273

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE------------E 219
           +  A+LD+Y KCG + DA R+F+ MPE++ V+W++M+ G+ +   Y+            +
Sbjct: 274 LSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKD 333

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ LF + Q   ++ N  T ++++CAC+ +  + +G+               F    LV 
Sbjct: 334 AIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGR-------------TFFNQMELV- 379

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
                      Y V  G++      +  M+    R     E + L EKM  A   P    
Sbjct: 380 -----------YGVLPGVKH-----YACMVDILGRAGLLEEAVELIEKMPMA---PAASV 420

Query: 340 YISVLSACS 348
           + ++L AC+
Sbjct: 421 WGALLGACT 429



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +CA++     G+  H+ I    +      SN +++ Y+KCG +  A+++FD+M
Sbjct: 239 TMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKM 298

Query: 95  PQRCIVSWNTI------IGSYTT------NGREQEAVALFINMLREGKTPYSEFTVSSVL 142
           P++ IVSW T+      IG Y        +G  ++A+ALF  M +E K   +  T +++L
Sbjct: 299 PEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKM-QEDKVKPNAVTFTNIL 357

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTA----LLDVYAKCGLISDASRVFESMP 197
           CAC+    V E +    F  +  +   V  G      ++D+  + GL+ +A  + E MP
Sbjct: 358 CACSHVGLVEEGR---TFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMP 413



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYA--KCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           Q KQ+HA + +TG   + F+AS L+   A      +  A  VF  I   N+  WNT+I  
Sbjct: 50  QLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109

Query: 312 FSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           ++  +   + +++F +M  Q+   P++ T+  ++ A S +  +  GK++  +++K   VL
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIK---VL 166

Query: 371 --PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
              +VF  + +I    + G +   Y + +N P     S W S++ +
Sbjct: 167 LGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVS-WNSMITA 211


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 335/598 (56%), Gaps = 55/598 (9%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  ++  G N++      LI  YSKCG +  A K+F  M  R +V W+++I +Y  +GR 
Sbjct: 361 HGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRG 420

Query: 116 QEAVALFINMLR--EGKT--------PYSEFTVSSVLCACAAK----------------- 148
            EA+ +F  M++  +G T        P  +  ++   C  A                   
Sbjct: 421 GEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWL 480

Query: 149 ---RDVF--------ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
               ++F        +  + ++FA     D  +    A++  Y     I  AS VFE +P
Sbjct: 481 GHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIM--YVSFNRIDAASIVFEDIP 538

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY-------NQFTISSVICACAGLA 250
                 W+ M+ GF  +  +  +L L+ +    GL+        N+ +I SV+ AC  L 
Sbjct: 539 NPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLG 598

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           AL +G+  H+ + +TGF  ++  A++++DMY+KCG +  A  +F     K++V W+ MI+
Sbjct: 599 ALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIA 658

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
            +  H    + + LF++M +AG+ P+  T+  VLSACSH G++E+GK YF LM ++  + 
Sbjct: 659 SYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIA 718

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
             + +Y+CM+D+LGRAG + EA DLI NMP +  AS+WGSLL +CR + NL+LAE  A  
Sbjct: 719 RKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADH 778

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-------- 482
           LF ++P +AG H+LLSNIYAA  RW EV + RK++      K +  S VE          
Sbjct: 779 LFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGV 838

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
           G R+HP+  ++Y+KLE+L   MK LGY P T+  LHD+E+  K+  L +HSE+LA+ FGL
Sbjct: 839 GDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGL 898

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +   PG  +RI KNLRICGDCH+ +K  S+I  R  +VRD++RFH F +G CSC D+W
Sbjct: 899 INTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 179/365 (49%), Gaps = 43/365 (11%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
            Q+C   R+  +    H+++   G+ +DT  +  L + Y+KC  +  ARKVFDE P   +
Sbjct: 11  FQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNV 67

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
             WN+ + SY    + +E + LF  M+         FT+   L ACA  R +   K +H 
Sbjct: 68  HLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG 127

Query: 160 FALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
           FA K   +  ++FVG+AL+++Y+KCG + +A +VFE     + V W+SMV G+ QN   E
Sbjct: 128 FAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPE 187

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL LF +               V+  C                    F  ++   +SL+
Sbjct: 188 EALALFSQM--------------VMMDC--------------------FDGDLPLVNSLL 213

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           ++YAK GC   A  +FS + EK+V+ W+TMI+ ++ +  + E + LF +M +    PN  
Sbjct: 214 NLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSV 273

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T +S L AC+    +E+GK      + +  V  +V  +  ++    + G+ +++  +  N
Sbjct: 274 TVVSALQACAVSRNLEEGKK-----IHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRN 328

Query: 399 MPFDA 403
           M  D 
Sbjct: 329 MLSDG 333



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 190/419 (45%), Gaps = 83/419 (19%)

Query: 64  LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
            + D    N L+N Y+K G    A  +F +MP++ ++SW+T+I  Y  N    EA+ LF 
Sbjct: 202 FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFH 261

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M+ +   P S  TV S L ACA  R++ E K++H  A+                     
Sbjct: 262 EMIEKRFEPNS-VTVVSALQACAVSRNLEEGKKIHKIAV--------------------- 299

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                          ++ V+W ++++G+ QN +  +++ +FR     G++ +   +  ++
Sbjct: 300 --------------WKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKIL 345

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            A + L    Q   +H  + ++GF SN+F  +SL+++Y+KCG + DA  +F G+  ++VV
Sbjct: 346 AASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVV 405

Query: 304 LWNTMISGFSRHARSVEVMILFEKM----------QQAGLHPNEQTYISVLSA--CSHIG 351
           +W++MI+ +  H R  E + +F++M           Q  + P  Q  +++ S    +HI 
Sbjct: 406 IWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIP 465

Query: 352 MVEKG---KSYFDLMVKQHNVLP------------NVFHYSCMID--ILGRAGLIHEAYD 394
              K    +++F  +     + P            N+F Y    D  IL +  +++ +++
Sbjct: 466 WKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFN 525

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF-------------GMEPDNAG 440
            I     DA + ++  +   C    N+ +   A    F             G++PDN+G
Sbjct: 526 RI-----DAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSG 579



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 133/285 (46%), Gaps = 14/285 (4%)

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           AC   R V    QLH    K  +  + F  T L  +YAKC  +  A +VF+  P  N   
Sbjct: 13  ACNNGRSV---SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHL 69

Query: 204 WSSMVAGFVQNELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W+S +  + + + +EE L LF       G   + FTI   + ACAGL  L  GK +H   
Sbjct: 70  WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129

Query: 263 CKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
            K    GS+MF  S+LV++Y+KCG + +A  VF   +  + VLW +M++G+ ++    E 
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189

Query: 322 MILFEKMQQAGLHPNEQTYI-SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
           + LF +M        +   + S+L+  +  G  +   + F  M ++     +V  +S MI
Sbjct: 190 LALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEK-----DVISWSTMI 244

Query: 381 DILGRAGLIHEAYDLILNM---PFDATASMWGSLLASCRNYRNLE 422
                    +EA +L   M    F+  +    S L +C   RNLE
Sbjct: 245 ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLE 289



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           ++ + L +C    A  +G+  H+ +I  G   D L +  +++ YSKCG +  AR +FDE 
Sbjct: 586 SILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDET 645

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V W+ +I SY  +G  ++A+ LF  M++ G  P S  T + VL AC+    + E 
Sbjct: 646 AGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRP-SHVTFTCVLSACSHSGLLEEG 704

Query: 155 KQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           K    +   +  + R +     ++D+  + G +S+A  + E+MP E +   W S++  
Sbjct: 705 KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 762


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 325/559 (58%), Gaps = 44/559 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA +   G  +  + +  L++ YSKCG +  + + F+ M +   VSWN +I ++  
Sbjct: 155 GRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAE 214

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           + R  EA+     M  EG            + AC+                      +V 
Sbjct: 215 HRRGLEALRTLQKMFLEG------------IRACS----------------------DVV 240

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VGT L+++YAKC  + DA+  F  + E N +TW+ +++ +VQ+  ++EA+ LFRR  +LG
Sbjct: 241 VGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISAYVQHCCFKEAMELFRRMLLLG 300

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV-DMYAKCGCVVDA 290
           LE ++ T  +++ AC    AL  G+ +HA + +    SN     +++ +MY KCG + DA
Sbjct: 301 LEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQDA 360

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA-CSH 349
             +F  + + +V+ WNTMI+ + +H  + E +  +E MQ+ G+ P++ TY+SV+ A C++
Sbjct: 361 EAMFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDASCAN 420

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+ E+  +YF  M + H V P   HY CM++ LG+AG + +A  LI  MPF+     W 
Sbjct: 421 AGLPEEAHAYFVSMQQDHGVRPGGGHYGCMVESLGKAGRLSDAETLIQCMPFEPDVLTWT 480

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           S LA+CR++ +++  ++AAK    ++P+ +  ++ L+ I+A    ++E +R RKL+ D  
Sbjct: 481 SFLANCRSHGDMKRGKLAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRG 540

Query: 470 VKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           ++K   +S +++         G +++PR  EI+ +L++L +EMK  GY P+  H  HDVE
Sbjct: 541 IRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKSAGYDPDMAHVAHDVE 600

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
             +K+ LL  HSE+LA+ FG++   PG P+RIMKNLR+CGDCH+  K  S+I  RE IVR
Sbjct: 601 AGQKEPLLFAHSERLAIAFGIISTSPGTPLRIMKNLRVCGDCHTMTKLTSKITRREIIVR 660

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D NRFHHF NGSCSC DFW
Sbjct: 661 DSNRFHHFKNGSCSCKDFW 679



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 191/377 (50%), Gaps = 38/377 (10%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           +QSCAR  A   G+  H  +  +GL +D   SN L+  Y KCG +  AR VF+  P + +
Sbjct: 41  IQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNV 100

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLH 158
            SW  +I     +GR QEA+ALF  ML++G  P+S  + ++ + AC+A  +     + LH
Sbjct: 101 FSWTILITVCAQHGRSQEALALFYEMLKQGIQPHS-VSFTAAINACSAGPEFLPAGRALH 159

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
               +      V   T+L+ +Y+KCG + ++ R FESM E N V+W++M+A F ++    
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGL 219

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL   R  Q + LE         I AC                      S++   ++LV
Sbjct: 220 EAL---RTLQKMFLEG--------IRAC----------------------SDVVVGTTLV 246

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           +MYAKC  + DA   F  ++E N++ WN +IS + +H    E M LF +M   GL  +E 
Sbjct: 247 NMYAKCSGLHDANAAFVKLQEPNIITWNVLISAYVQHCCFKEAMELFRRMLLLGLEMDEV 306

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLIL 397
           T+I++L AC     +E G++     V++H +  N     + ++++ G+ G + +A  +  
Sbjct: 307 TFINILGACCVPVALEDGRA-IHACVREHPLASNHAPLENVILNMYGKCGSLQDAEAMFK 365

Query: 398 NMPFDATASMWGSLLAS 414
           +M        W +++A+
Sbjct: 366 SMS-QPDVIAWNTMIAA 381


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/597 (36%), Positives = 343/597 (57%), Gaps = 25/597 (4%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           + +   ++N+N T   +L   L  C   R     K   A  I   L++D    ++L  F 
Sbjct: 9   TPMCPPNSNSNTTHPLSL---LPKCTSLR---ELKQLQAFAIKTHLHSDL---SVLTKFI 59

Query: 79  SKCGL------ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
           + C L      +  A  +FD++PQ  IV +NT+   Y        A  LF  +L  G  P
Sbjct: 60  NFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFP 119

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
             ++T  S+L ACA+ + + E +QLH  A+K  +  NV+V   L+++Y  C  +  A RV
Sbjct: 120 -DDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRV 178

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ + E   VT+++M+ G+ +     EAL LFR  Q   L+    T+ SV+ +CA L AL
Sbjct: 179 FDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGAL 238

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             GK +H  + K GF   +   ++L+DMYAKCG + DA  VF  +  ++   W+ MI  +
Sbjct: 239 DLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAY 298

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           + H   ++ + LF++M++AG  P+E T++ +L ACSH G+VE+G  YF  M  ++ V+P 
Sbjct: 299 AIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPG 358

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           + HY CM+D+LGRAG + EAY+ I+ +P   T  +W +LL++C ++ N+EL +   +Q+F
Sbjct: 359 IKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIF 418

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GK 484
            ++  + G++++LSN+ A   RWE+V   RKL+ +  V K    S VE+         G 
Sbjct: 419 ELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGD 478

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DVEDSRKQELLIHHSEKLALTFGLM 543
             H    +++  L++LV+E+K +GY P T    H D+ED  K+  L +HSEKLA+TFGL+
Sbjct: 479 GVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLL 538

Query: 544 CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              PG  IR++KNLR+CGDCHS  K  S I  R+ I+RD+ RFHHF +G CSC D+W
Sbjct: 539 NTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/605 (34%), Positives = 337/605 (55%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   + +CA+ +    GK   + I  +G+   T+  N L++ Y KCG I  AR++FDE 
Sbjct: 233 TMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDEC 292

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V +NTI+ +Y  +    + + +   ML++G  P  + T+ S + ACA   D+   
Sbjct: 293 ANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRP-DKVTMLSTIAACAQLGDLSVG 351

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV-- 212
           K  H + L+  ++    +  A++D+Y KCG    A +VFE MP +  VTW+S++AG V  
Sbjct: 352 KSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRD 411

Query: 213 -----------------------------QNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                                        Q  ++EEA+ LFR  Q  G+  ++ T+  + 
Sbjct: 412 GDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIA 471

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC  L AL   K V   + K     ++   ++LVDM+++CG    A  VF  +E+++V 
Sbjct: 472 SACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVS 531

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W   I   +    +   + LF +M +  + P++  ++++L+ACSH G V++G+  F  M
Sbjct: 532 AWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSM 591

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
            K H + P++ HY CM+D+LGRAGL+ EA DLI +MP +    +WGSLLA+CR ++N+EL
Sbjct: 592 EKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVEL 651

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK- 482
           A  AA++L  + P+  G H+LLSNIYA+  +W +VAR R  +++  V+K    S +E++ 
Sbjct: 652 AHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQG 711

Query: 483 -------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                  G  +H     I   LE++   + + GY P+T + L DV++  K+ LL  HSEK
Sbjct: 712 LIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEK 771

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ +GL+    G+PIR++KNLR+C DCHSF K  S++  RE  VRD NR+H F  G CS
Sbjct: 772 LAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCS 831

Query: 596 CWDFW 600
           C D+W
Sbjct: 832 CRDYW 836



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 190/384 (49%), Gaps = 33/384 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C++  A   G   H  ++ MGL  D   SN LI+FY++CG +   RK+FD M
Sbjct: 132 TFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGM 191

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW ++I  Y+     +EAV+LF  M   G  P +  T+  V+ ACA  +D+   
Sbjct: 192 LERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEP-NPVTMVCVISACAKLKDLELG 250

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++  +  +  M+ +  +  AL+D+Y KCG I  A ++F+    +N V ++++++ +V +
Sbjct: 251 KKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH 310

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E   + L++       G   ++ T+ S I ACA L  L  GK  HA + + G       +
Sbjct: 311 EWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNIS 370

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR----------------- 317
           ++++DMY KCG    A  VF  +  K VV WN++I+G  R                    
Sbjct: 371 NAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLV 430

Query: 318 SVEVMI--------------LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           S   MI              LF +MQ  G+  +  T + + SAC ++G ++  K +    
Sbjct: 431 SWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAK-WVCTY 489

Query: 364 VKQHNVLPNVFHYSCMIDILGRAG 387
           ++++++  ++   + ++D+  R G
Sbjct: 490 IEKNDIHVDLQLGTALVDMFSRCG 513



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 199/377 (52%), Gaps = 13/377 (3%)

Query: 51  RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF--DEMPQRCIVSWNTIIGS 108
           +G +CH     +   N  + S++ I        +  AR  F  D+     +  +N +I  
Sbjct: 51  KGLLCHKPASNL---NKLIASSVQIGTLES---LDYARNAFGDDDGNMASLFMYNCLIRG 104

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           Y + G   +A+ L++ ML  G  P  ++T   +L AC+    + E  Q+H   LK  ++ 
Sbjct: 105 YASAGLGDQAILLYVQMLVMGIVP-DKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEG 163

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           ++FV  +L+  YA+CG +    ++F+ M ERN V+W+S++ G+   +L +EA+ LF +  
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMG 223

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G+E N  T+  VI ACA L  L  GK+V + + + G   +    ++LVDMY KCG + 
Sbjct: 224 EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDIC 283

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            A  +F     KN+V++NT++S +  H  + +V+++ ++M Q G  P++ T +S ++AC+
Sbjct: 284 AARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACA 343

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIHEAYDLILNMPFDATASM 407
            +G +  GKS    +++  N L    + S  +ID+  + G    A  +  +MP + T   
Sbjct: 344 QLGDLSVGKSSHAYVLR--NGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVT 400

Query: 408 WGSLLASCRNYRNLELA 424
           W SL+A      ++ELA
Sbjct: 401 WNSLIAGLVRDGDMELA 417


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 333/586 (56%), Gaps = 42/586 (7%)

Query: 56  HAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           H +++  GL  D + ++ L+ F      G ++ AR VFD + +     WNT+I  Y+ + 
Sbjct: 38  HGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSK 97

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
             +EA+ L+ +ML     P++ +T   +L AC++     E +Q+H   +K      ++  
Sbjct: 98  EPEEALLLYHHMLYH-SVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTT 156

Query: 174 TALLDVYAK-------------------------------CGLISDASRVFESMPERNEV 202
            +LL+VY+K                               CG I  A  +F  MPERN +
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNII 216

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+SM++G V     +EAL LF R Q  G++ +   + S + ACA L  L QGK +HA +
Sbjct: 217 SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K     +      L+DMYAKCG + +A  VF  +EEK V +W  MISG++ H R  E +
Sbjct: 277 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 336

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
             F KMQ AG+ PN+ T+  +L+ACSH G+V + K  F+ M + H   P++ HY CM+D+
Sbjct: 337 EWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDL 396

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
           LGRAGL+ EA +LI NMP    A++WG+LL +C  + NLEL +   K L  ++P + G +
Sbjct: 397 LGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRY 456

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIY 494
           + L++I+AA   W + AR R+ +++  V K    S + +         G  +HP+I EI 
Sbjct: 457 IHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEID 516

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIM 554
             LE++VE +++ GYKP+    L D+ED  K+  + HHSEKLA+TFGL+   PG+ IRI+
Sbjct: 517 HMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIV 576

Query: 555 KNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KNLR+C DCH+ +K  S++  RE ++RD  RFH F +G+C+C D+W
Sbjct: 577 KNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 157/348 (45%), Gaps = 48/348 (13%)

Query: 2   KSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIG 61
           ++LL Y H  Y+         S   NA      T    L++C+   A    +  HA II 
Sbjct: 101 EALLLYHHMLYH---------SVPHNA-----YTFPFLLKACSSMSASEETQQIHAHIIK 146

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT---------- 111
           MG  ++  T+N L+N YSK G I  AR +FD++ QR  VSWN++I  YT           
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206

Query: 112 ---------------------NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
                                 G+ +EA+ LF  M   G        + S L ACA    
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAG-IKLDNVALVSTLQACADLGV 265

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           + + K +H +  K  ++ +  +G  L+D+YAKCG + +A  VF  M E+    W++M++G
Sbjct: 266 LDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISG 325

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGS 269
           +  +    EAL  F + Q  G+E NQ T + ++ AC+    + + K +   + +  GF  
Sbjct: 326 YAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
           ++     +VD+  + G + +A  +   +  K N  +W  +++    H 
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 158/321 (49%), Gaps = 37/321 (11%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDASRVFESMPERNEVTWSSMVAG 210
           E +Q+H   LK  +  +    + LL   A    G ++ A  VF+ +   N   W++M+ G
Sbjct: 33  ELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRG 92

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +  ++  EEAL+L+       + +N +T   ++ AC+ ++A  + +Q+HA + K GFGS 
Sbjct: 93  YSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSE 152

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR---------------- 314
           ++  +SL+++Y+K G +  A  +F  +++++ V WN+MI G+++                
Sbjct: 153 IYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPE 212

Query: 315 ---------------HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
                            +  E + LF +MQ AG+  +    +S L AC+ +G++++GK +
Sbjct: 213 RNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK-W 271

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY- 418
               +K+H +  +      +ID+  + G + EA ++   M  +   S+W ++++    + 
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHG 330

Query: 419 RNLELAEIAAK-QLFGMEPDN 438
           R  E  E   K Q  G+EP+ 
Sbjct: 331 RGREALEWFMKMQTAGVEPNQ 351


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 331/618 (53%), Gaps = 73/618 (11%)

Query: 56  HAKIIGMGLN-NDTLTSNILINFY--SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           HA II   L+ N+ + + +L   +  S    +  AR VFDE+P      WNT+I +Y  +
Sbjct: 23  HALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNS 82

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
              QE+++LF  M  +   P   +++S V+ AC   +D    ++LH   LK  +  ++FV
Sbjct: 83  QNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFV 142

Query: 173 GTALLDV-------------------------------YAKCGLISDASRVFESMPERNE 201
            TAL+++                               Y + G I+ A  +F+ MPER+ 
Sbjct: 143 ETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDL 202

Query: 202 VTW-------------------------------SSMVAGFVQNELYEEALILFRRAQVL 230
           V+W                               SSM+A + +     EAL LF   Q+ 
Sbjct: 203 VSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLA 262

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            +  ++ T+ SV+ AC  + AL  GK +H  + +     ++   +SLVDMYAKCG + ++
Sbjct: 263 NVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNS 322

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF+G+  ++V  W+ MI G + H      +  F KM    + PN+ T+I VLSACSHI
Sbjct: 323 LRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHI 382

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G+V++G +YF  M K ++V P + HY C++DILGRAG + EA +LI +MPF   A +W +
Sbjct: 383 GLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRA 442

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +CR Y+N+E+AE A   L  +EP   GN++LLSNIY+  + W++V   R+++++  +
Sbjct: 443 LLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINI 502

Query: 471 KKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           +K    S +E+         G ++HP   +I   L ++   +K  GY P T   L D ++
Sbjct: 503 QKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDE 562

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K+  L HHSEKLA+ FGL+   PG  IRI+KNLR+C DCH  +K  SR   R  IVRD
Sbjct: 563 KEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRD 622

Query: 583 LNRFHHFTNGSCSCWDFW 600
            NRFHHF NGSCSC D+W
Sbjct: 623 RNRFHHFVNGSCSCKDYW 640



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 153/337 (45%), Gaps = 72/337 (21%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISD---ASRVFESMPERNEVTWSSMVAGFV 212
           Q+H   +K ++D N FV   LL     C   +D   A  VF+ +P  +   W++M+  ++
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 213 QNELYEEALILF---RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            ++  +E++ LF   R  + + ++   +++S VI AC  L     G+++H  + K G GS
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPID--SYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGS 138

Query: 270 NMFAASSLVDMYAKCG------CVVD-------------------------AYFVFSGIE 298
           ++F  ++L++MYAK G       ++D                         A+ +F  + 
Sbjct: 139 DLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMP 198

Query: 299 EKNVVLWNTMISG-------------------------------FSRHARSVEVMILFEK 327
           E+++V WNTMI G                               +++  +S E + LF +
Sbjct: 199 ERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHE 258

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           MQ A + P++ T +SVLSAC  +G +  GK   +  ++++ +  ++   + ++D+  + G
Sbjct: 259 MQLANVLPDKVTMVSVLSACGDVGALGMGKMIHEC-IERNRIEIDLKLGTSLVDMYAKCG 317

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
            I  +   + N   +     W +++    N+   ELA
Sbjct: 318 DIDNSLR-VFNGMNNRDVFAWSAMIMGLANHGFGELA 353



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +C    A   GK+ H  I    +  D      L++ Y+KCG I  + +VF+ M
Sbjct: 270 TMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGM 329

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
             R + +W+ +I     +G  + A+  F  M+ E   P ++ T   VL AC+    V E 
Sbjct: 330 NNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKP-NDVTFIGVLSACSHIGLVDEG 388

Query: 154 ----CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
                    V+ +   ++        ++D+  + G + +A  + +SMP   + + W +++
Sbjct: 389 WTYFTSMSKVYDVSPKIEHY----GCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444

Query: 209 AG---FVQNELYEEALI 222
                +   E+ EEA +
Sbjct: 445 GACRIYKNVEIAEEATV 461


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/456 (42%), Positives = 297/456 (65%), Gaps = 13/456 (2%)

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFVQN 214
           LH    K   +RN  V   +LD YAK G   +  A +VF++M ER+ V+W+SM+A + QN
Sbjct: 220 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQN 278

Query: 215 ELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            +  EA+ L+ +   +G  ++ N   +S+V+ ACA   A+  GK++H  + + G   N++
Sbjct: 279 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVY 338

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +S+VDMY+KCG V  A   F  I+EKN++ W+ MI+G+  H R  E + +F +M+++G
Sbjct: 339 VGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSG 398

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           L PN  T+ISVL+ACSH G++++G+ +++ M ++  +   V HY CM+D+LGRAG + EA
Sbjct: 399 LRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEA 458

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           Y LI  M     A++WG+LL++CR ++N+ELAE++ K+LF ++  N+G ++LLSNIYA  
Sbjct: 459 YSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEA 518

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
           R W++V R R L++   ++K    S  E+KGK        ++HP+  EIYS LEKL+E M
Sbjct: 519 RMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERM 578

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           ++ GY P T   LHD+++  K+  L  HSEKLA+ F LM   P   I I+KNLR+C DCH
Sbjct: 579 QEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCH 638

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + MKF ++I  RE I+RDL RFHHF +G CSC D+W
Sbjct: 639 TAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 164/303 (54%), Gaps = 9/303 (2%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVC--HAKIIGMGLNNDTLTSNILINFYSKCGL 83
           A+ +A+ +    A +   A  R P RG     HA I  +G   +    N +++ Y+K G 
Sbjct: 189 ASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGS 248

Query: 84  --ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR-EGKTPYSEFTVSS 140
             +  ARKVFD M +R +VSWN++I  Y  NG   EA+ L+  ML   G    +   +S+
Sbjct: 249 RDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSA 307

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           VL ACA    +   K++H   ++  ++ NV+VGT+++D+Y+KCG +  ASR F  + E+N
Sbjct: 308 VLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 367

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VH 259
            ++WS+M+ G+  +   +EAL +F   +  GL  N  T  SV+ AC+    L +G+   +
Sbjct: 368 ILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYN 427

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARS 318
           A+  + G  + +     +VD+  + GC+ +AY +   ++ K +  +W  ++S    H ++
Sbjct: 428 AMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH-KN 486

Query: 319 VEV 321
           VE+
Sbjct: 487 VEL 489


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 340/579 (58%), Gaps = 16/579 (2%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           L      L  C  +RA   G+  HA  I             LI FY+KC  +  AR V +
Sbjct: 26  LQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARHVLN 85

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           EMP+R +VSW  +I +Y+  G   +A+++ + +LR G T  +EFT +++       R + 
Sbjct: 86  EMPERNVVSWTAMISAYSQRGYASQALSILVQILRSG-TESNEFTFATM--PYFMYRFLG 142

Query: 153 EC--KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
            C  + +H   +K     +V+VG++LLD+YAK G I +A  +FE +PER+ V+ +++++G
Sbjct: 143 FCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISG 202

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q +L EE L LF R Q  G+  N  T +SV+ A +GLAAL  GKQVH  L  +   S 
Sbjct: 203 YAQLDLDEE-LELFLRLQREGMXSNYVTYTSVLTALSGLAALDHGKQVHNHLLCSEVPSF 261

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   +SL+DMY+KCG +  A  +F  + E+ V+ WN M+ G+S+H    EV+ LF  M+ 
Sbjct: 262 VILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFNLMRD 321

Query: 331 AG-LHPNEQTYISVLSACSHIGMVEKGKS-YFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
              + P+  T ++VLS CSH G  +KG   ++D+   + +V P+   Y C++D+LGRAG 
Sbjct: 322 ENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGKISVQPDTKRYGCVVDLLGRAGR 381

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA++ I  +PF+ +A++ G LL +C  + NL + E    +L   EP+NAGN+++LSN+
Sbjct: 382 VEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPENAGNYVILSNL 441

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKL 500
           YA+  RWE+V   R L+    V KE  +S +E+            +HPR  E+ +K ++L
Sbjct: 442 YASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQTFHPSDCSHPRREEVSAKXQEL 501

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
           +   K+ GY P+    LHDV++ +K+++L+ HSEKLAL+FGL+     V I ++KNLRIC
Sbjct: 502 LVRFKEAGYFPDLSCVLHDVDEEQKEKILLSHSEKLALSFGLIATPESVLICVIKNLRIC 561

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
            DCH+F K+ S+I  RE  +RD N FH      CSC D+
Sbjct: 562 VDCHNFAKYISKIYSREVSLRDKNWFHGIVGEKCSCGDY 600



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 4/182 (2%)

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EALI   +  + GL+ N    ++V+  C    A  +G++VHA   KT +   ++  + L+
Sbjct: 12  EALI---QMTLXGLDMNLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLI 68

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
             Y KC  + DA  V + + E+NVV W  MIS +S+   + + + +  ++ ++G   NE 
Sbjct: 69  VFYTKCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRSGTESNEF 128

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+ ++             ++   L++K  N   +V+  S ++D+  + G IHEA  +   
Sbjct: 129 TFATMPYFMYRFLGFCLREAIHSLIIKL-NFKAHVYVGSSLLDMYAKDGKIHEARGIFEC 187

Query: 399 MP 400
           +P
Sbjct: 188 LP 189


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/579 (36%), Positives = 338/579 (58%), Gaps = 33/579 (5%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA I  + L  DT  +N LI FYSKC  +  AR++F+ +  R I+SWN+++  Y  
Sbjct: 346 GREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQ 405

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD------VFECKQLHVFALKAA 165
           N ++     +F  M+  G  P S    S  +   AA RD          K++H + L+  
Sbjct: 406 NEQQGRCFDIFKRMMLSGIEPDSH---SLTIIFNAASRDSSGLIYFRRGKEIHGYILRRI 462

Query: 166 MDRNVF--VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALIL 223
               V   V  A+L +YAK   I+DA ++F+ M  R+  +W++M+ G+ +N  +E+ L++
Sbjct: 463 TPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMI 522

Query: 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN-------MFAASS 276
           F      G   +  ++S ++ +C  L +L  GKQ HAV+ K   G +       +   ++
Sbjct: 523 FLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNA 582

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+ MY+KCG + DA  VF  +E K+V  W  MI+G + H  +VE + LFE+M+  G+ PN
Sbjct: 583 LISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPN 642

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + T++++L AC+H G+V++G  YFD M   + + P++ HY+CMID+ GR+G    A  L+
Sbjct: 643 QVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLV 702

Query: 397 -----LNMPF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
                L  P+ D   ++W  LL +C   + L+L   AA ++  +EP++   ++LL+N+YA
Sbjct: 703 EFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYA 762

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
           ++  WE+  + RK +RD  ++KE   SW++   +R+        HP+  EIY KL +L  
Sbjct: 763 SSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNY 822

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM-CLCPGVPIRIMKNLRICG 561
             +++GY P TE  LHDV+++ K+ +L  HSEKLA++FGL+ C      IR+MKNLR+C 
Sbjct: 823 SCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCE 882

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCHS+MKFAS +  RE ++RD  RFH F +GSCSC D+W
Sbjct: 883 DCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 158/297 (53%), Gaps = 5/297 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC--IVSWNTIIGSYTTNG 113
           H   I  G   D+      I  YS+CG++  A++VFDE       I+ WN+II +Y  +G
Sbjct: 144 HGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHG 203

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
              E + LF  M+  G    +E T +SV+ AC +  +      +H   +KA ++    + 
Sbjct: 204 CWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATN-LW 262

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL--G 231
            +L+  Y KCG +  AS++FE +  ++ V+W++M+A   Q    E AL LFRR   +   
Sbjct: 263 NSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPP 322

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           ++ N+ T  S++ A +GL+AL  G+++HA + +     +    +SL+  Y+KC  V  A 
Sbjct: 323 VQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAR 382

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
            +F  +  ++++ WN+M++G+ ++ +      +F++M  +G+ P+  +   + +A S
Sbjct: 383 EIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAAS 439



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 151/277 (54%), Gaps = 9/277 (3%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A+++FD  P R ++SW+ +I +Y+  G   +A  LF  M+ EG  P + F+++S+L    
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQP-NGFSLASLLKVSC 132

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE--SMPERNEVTW 204
           +  ++  C+QLH ++++     +  +  A + +Y++CG++ DA RVF+  S+   + + W
Sbjct: 133 STGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLW 192

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           +S++A ++ +  + E L LF +   +G +   + T +SV+ AC        G  VH  + 
Sbjct: 193 NSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRII 252

Query: 264 KTGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
           K G   +N++  +SLV  Y KCG +  A  +F  I  K+VV WN MI+   +       +
Sbjct: 253 KAGLEATNLW--NSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENAL 310

Query: 323 ILFEKMQ--QAGLHPNEQTYISVLSACSHIGMVEKGK 357
            LF +M   +  + PN  T++S+LSA S +  +  G+
Sbjct: 311 GLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGR 347



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 136/266 (51%), Gaps = 6/266 (2%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A ++F++ P R+ ++WS+++A + +   + +A  LF++    GL+ N F+++S++     
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF--SGIEEKNVVLWN 306
              +   +Q+H    +TGFG +    ++ + MY++CG + DA  VF  + +   +++LWN
Sbjct: 134 TGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWN 193

Query: 307 TMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           ++I+ +  H   VEV+ LF KM   G + P E TY SV++AC   G  + G      ++K
Sbjct: 194 SIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIK 253

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
                 N+  ++ ++   G+ G +  A  L   +      S W +++A+       E A 
Sbjct: 254 AGLEATNL--WNSLVTFYGKCGNLQHASQLFERISRKDVVS-WNAMIAANEQRGEGENAL 310

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAA 451
              +++  +EP    N +   ++ +A
Sbjct: 311 GLFRRMLKVEPPVQPNRVTFLSLLSA 336


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 321/577 (55%), Gaps = 54/577 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L++C+       G   HA ++  GL  D    +  I  Y+  G +  AR++ D+ 
Sbjct: 140 TYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK 199

Query: 95  PQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                 V WN +I  Y                LR G+                A R++FE
Sbjct: 200 GGEVDAVCWNAMIDGY----------------LRFGEV--------------EAARELFE 229

Query: 154 CKQLHVFALKAAMDRNVF-VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
                        DR++     A++  +++CG++  A   F+ M ER+E++WS+M+ G++
Sbjct: 230 ----------GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYI 279

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q   + EAL +F + Q   +   +F + SV+ ACA L AL QG+ +H    +     +  
Sbjct: 280 QEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV 339

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +SLVDMYAKCG +  A+ VF  +  K V  WN MI G + H R+ + + LF KM    
Sbjct: 340 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD--- 396

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           ++PNE T++ VL+AC+H G+V+KG + F+ M K++ V P + HY C++D+LGRAGL+ EA
Sbjct: 397 IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA 456

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
             ++ ++P + T ++WG+LL +CR + N+EL E   K L  +EP N+G + LLSNIYA  
Sbjct: 457 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 516

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVE---------IKGKRNHPRIAEIYSKLEKLVEE 503
            RWEEV   RKL+++  +K     S ++         I G  +HP++ +IY  L+K+ E 
Sbjct: 517 GRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKER 576

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           ++  GY+P+    L D+++  K+  +  HSEKLA+ FGL+   PG  IRI+KNLR+C DC
Sbjct: 577 LQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDC 636

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HS  K  S++  RE IVRD  R+HHF NG+CSC DFW
Sbjct: 637 HSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 17/277 (6%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGL-----ISDASRVFESMPERNEVTWSSMVA 209
           KQ H   L+    ++ ++  +L+  YA            + RVF+ + + N   W+ M+ 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
             ++N    +A++L+    V     N++T  +V+ AC+    + +G QVHA L K G G 
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           +    SS + MYA  G +V+A  +      E + V WN MI G+ R         LFE M
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
               +       IS  S C   GMVE  + +FD M ++  +      +S MID   + G 
Sbjct: 232 PDRSMISTWNAMISGFSRC---GMVEVAREFFDEMKERDEI-----SWSAMIDGYIQEGC 283

Query: 389 IHEAYDLILNMPFDATAS---MWGSLLASCRNYRNLE 422
             EA ++   M  +       +  S+L++C N   L+
Sbjct: 284 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 320


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/607 (35%), Positives = 333/607 (54%), Gaps = 42/607 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGL------------------------------ 64
           T    L+SCA+ +A   G   H  ++ +G                               
Sbjct: 65  TFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRS 124

Query: 65  -NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
            + D ++   L+  Y+  G I  AR +FDE+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 125 SHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFK 184

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++    P  E T+ +V+ A A    +   +Q+H +        N+ +  AL+D Y+KC
Sbjct: 185 EMMKTNVRP-DESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKC 243

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +F  +  ++ ++W+ ++ G+    LY+EAL+LF+     G   N  T+ S++
Sbjct: 244 GEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSIL 303

Query: 244 CACAGLAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
            ACA L A+  G+ +H  + K   G  +     +SL+DMY+KCG +  A+ VF+ +  K+
Sbjct: 304 HACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKS 363

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +  WN MI GF+ H R+     +F +M++  + P++ T++ +LSACSH GM++ G+  F 
Sbjct: 364 LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFR 423

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M   + + P + HY CMID+LG +GL  EA ++I  M  +    +W SLL +C+ + N+
Sbjct: 424 SMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNV 483

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           EL E  A+ LF +EP+N G+++LLSNIYA   RW EVAR R L+ D  +KK    S +EI
Sbjct: 484 ELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEI 543

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
                    G + HPR  EIY  LE++   +++ G+ P+T   L ++E+  K+  L HHS
Sbjct: 544 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHS 603

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FGL+   P   + I+KNLR+C +CH   K  S+I  RE I RD  RFHHF +G 
Sbjct: 604 EKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 663

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 664 CSCNDYW 670



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 183/358 (51%), Gaps = 34/358 (9%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           A  VF+ + +  ++ WNT+   +  +     A+ L++ M+  G  P S +T   +L +CA
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNS-YTFPFLLKSCA 74

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDV--------------------------- 179
             +   E  Q+H   LK   + +++V T+L+ +                           
Sbjct: 75  KLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTA 134

Query: 180 ----YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
               YA  G I  A  +F+ +P ++ V+W++M++G+V+   Y+EAL LF+      +  +
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPD 194

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           + T+ +VI A A   ++  G+QVH+ +   GFGSN+   ++L+D Y+KCG +  A  +F 
Sbjct: 195 ESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
           G+  K+V+ WN +I G++      E ++LF++M ++G  PN+ T +S+L AC+H+G ++ 
Sbjct: 255 GLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDI 314

Query: 356 GKSYFDLMVKQHNVLPNVFHY-SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           G+     + K+   + N     + +ID+  + G I  A+  + N     +   W +++
Sbjct: 315 GRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQ-VFNSMLHKSLPAWNAMI 371



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 36/266 (13%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  VFE++ E N + W++M  G   +     AL L+     LGL  N +T   ++ +CA 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV--------------- 293
           L A  +G Q+H  + K G+  +++  +SL+ MY +   + DA+ V               
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 294 ----------------FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
                           F  I  K+VV WN MISG+       E + LF++M +  + P+E
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T ++V+SA +  G +E G+      +  H    N+   + +ID   + G +  A  L L
Sbjct: 196 STMVTVISASARSGSIELGRQVHS-WIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 398 NMPFDATASMWGSLLASCRNYRNLEL 423
            + +    S W  L+     Y +L L
Sbjct: 255 GLSYKDVIS-WNILIGG---YTHLNL 276


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 337/577 (58%), Gaps = 19/577 (3%)

Query: 40  LQSCARERAPVRGKVCHAKII---GMGLNNDTLTSNILINFYSKCGLISGARKVF---DE 93
           L +C   R+   G+  H  ++      L N TL +  LI  YS CG ++ AR+VF   DE
Sbjct: 77  LHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTK-LITLYSVCGRVNEARRVFQIDDE 135

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            P    V W  +   Y+ NG   EA+ L+ +ML     P   F  S  L AC+   +   
Sbjct: 136 KPPEEPV-WVAMAIGYSRNGFSHEALLLYRDMLSCCVKP-GNFAFSMALKACSDLDNALV 193

Query: 154 CKQLHVFALKAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
            + +H   +K  + + +  V  ALL +Y + G   +  +VFE MP+RN V+W++++AGF 
Sbjct: 194 GRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFA 253

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
                 E L  FR  Q  G+ ++  T+++++  CA + AL  GK++H  + K+   +++ 
Sbjct: 254 GQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVP 313

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +SL+DMYAKCG +     VF  +  K++  WNTM++GFS + +  E + LF++M + G
Sbjct: 314 LLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYG 373

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN  T++++LS CSH G+  +GK  F  +++   V P++ HY+C++DILGR+G   EA
Sbjct: 374 IEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEA 433

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
             +  N+P   + S+WGSLL SCR Y N+ LAE+ A++LF +EP+N GN+++LSNIYA  
Sbjct: 434 LSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANA 493

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKL-EKLVEE 503
             WE+V R R+++  + +KK+   SW++IK        G  +  R +  Y K+  +L   
Sbjct: 494 GMWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNA 553

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +K LGY P T   LHD+ +  K   +  HSE+LA  F L+    G+PIRI KNLR+C DC
Sbjct: 554 VKNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDC 613

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HS+MK  S++  R  ++RD NRFHHF NGSCSC D+W
Sbjct: 614 HSWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 315/533 (59%), Gaps = 13/533 (2%)

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML-REGKTPYSEFT 137
           S  G +S A  +F  +P      WN +I     +     AV  +  M    G       T
Sbjct: 46  SSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALT 105

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            S  L ACA      E  QLH   L+   + +V + T LLD YAK G +  A ++F+ MP
Sbjct: 106 CSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMP 165

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGK 256
           + +  +W++++AGF Q     +A++ F+R +V G L  N  T+   + AC+ L AL +G+
Sbjct: 166 QPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGE 225

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            VH  + +    SN+   + ++DMYAKCG +  AY+VF  +  +K+++ WNTMI  F+ H
Sbjct: 226 SVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMH 285

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               + + LFEK+ ++G+ P+  +Y++VL AC+H G+VE G   F+ M  Q  + PN+ H
Sbjct: 286 GDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMT-QRGLEPNIKH 344

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           Y  M+D+LGRAG + EAYD++ ++PF     +W +LL +CR Y ++E+AE+A+++L  M 
Sbjct: 345 YGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMG 403

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNH 487
             + G+ +LLSN+YAA +RW++V R R  +R  +VKK    S++EIKGK        ++H
Sbjct: 404 FISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSH 463

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
               EIY+KL+++   +K  GY  +T + LHD+ D  K+  L +HSEKLA+ FGL C   
Sbjct: 464 SSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEE 523

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G PI+++KNLRICGDCH  +K  S+I  RE IVRD  RFH F  G CSC D+W
Sbjct: 524 GTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 160/312 (51%), Gaps = 8/312 (2%)

Query: 11  FYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT 70
           F+Y++ +      AS   +  +  T    L++CAR  A       H++++  G N D L 
Sbjct: 87  FWYRAMA------ASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLL 140

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
              L++ Y+K G +  A+K+FDEMPQ  I SWN +I  +    R  +A+  F  M  +G 
Sbjct: 141 QTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGN 200

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
              +  TV   L AC+    + E + +H + ++  ++ NV V   ++D+YAKCG +  A 
Sbjct: 201 LRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAY 260

Query: 191 RVFESMP-ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            VFE+M  +++ +TW++M+  F  +    +AL LF +    G+  +  +  +V+CAC   
Sbjct: 261 WVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHA 320

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             +  G ++   + + G   N+    S+VD+  + G + +AY + S +   N+VLW T++
Sbjct: 321 GLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLL 380

Query: 310 SGFSRHARSVEV 321
            G  R    VE+
Sbjct: 381 -GACRTYGDVEM 391


>gi|41469322|gb|AAS07178.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|108709518|gb|ABF97313.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 654

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/584 (36%), Positives = 327/584 (55%), Gaps = 19/584 (3%)

Query: 36  LQATLQSCARERAPVR---GKVCHAKIIGMGL---NNDTLTSNILINFYSKCGLISGARK 89
           L+A   S +  R P     G   HA+ +  G    ++ T+ +  +++FY+ C     ARK
Sbjct: 71  LKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARK 130

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACA-- 146
           VFD MP+R  V+WN +I  Y   GR +EA+ LF +M REG       +T  ++L      
Sbjct: 131 VFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGRE 190

Query: 147 --AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
             + R +     LH   +KA ++R+ FVG +L+ +YA    + DA   F+ +   + + W
Sbjct: 191 GGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVW 250

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           SSM++ +V  E  E AL++F       ++  QF  S+V   C  +  L  GKQVHA   K
Sbjct: 251 SSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLK 310

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           +    +    ++L+ MY+ CGC+ DA  VFS  +  NV+ +N+MIS   +H    E +  
Sbjct: 311 SNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEH 370

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M+ AGL P+E T ++++S+ +H G+V +G   F+ MV    + P   HY+C++D+L 
Sbjct: 371 FRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLA 430

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           R+G I +A   I  MPF+A A +W  +L +C  +R++E  +  A+ LF MEP  A N++L
Sbjct: 431 RSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYIL 490

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           L NIYA   RW E  + R L+ +  V K+ + SW+E+  +        R+HP   EIY  
Sbjct: 491 LGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRN 550

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L++L+  +K  GY P+     H+++  RK+E L +H EKLA  FG +    G  +RIMKN
Sbjct: 551 LDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKN 610

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+CGDCH   K+ S + GRE I+RD  RFHHF +G CSC D+W
Sbjct: 611 LRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 654


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/604 (35%), Positives = 346/604 (57%), Gaps = 56/604 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA++I      D L +  L+ F   S    +  ARK+F  M +    S+NT+I + +
Sbjct: 28  KQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALS 87

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +    +A+ +FI M+ +     + FT  SV  AC     + E +Q+H  A+K  +D + 
Sbjct: 88  ESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDE 147

Query: 171 FVGTALLDVYAKCGLISDASRVF------------------------------------- 193
           FV + ++ +Y  CG++ DA R+F                                     
Sbjct: 148 FVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIG 207

Query: 194 ---------ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
                    + MP+R+ V+W+ M+AG+ Q+  ++EA+ +FR  Q+  +  N  T+ SV+ 
Sbjct: 208 ELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLP 267

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           A + L AL  GK VH    +   G +    S+L+DMYAKCG +  A  VF G+ ++NVV 
Sbjct: 268 AMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVT 327

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W+T+I+G + H R+ + +  FE M++AG+ P++ TYI +LSACSH G+V +G+ +FD MV
Sbjct: 328 WSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMV 387

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           +   + P + HY CM+D+LGRAGL+ E+ +LILNMP      +W +LL +C+ + N+E+ 
Sbjct: 388 RVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMG 447

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG- 483
           +  A+ L  + P ++G+++ LSNIYA+   WE VA+ R ++++ +V+K+   SW+E+ G 
Sbjct: 448 KRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGV 507

Query: 484 -------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                    +HP+  +I+S L+++   +  +GY+P T   L ++++  K+  L +HSEK+
Sbjct: 508 IHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKI 567

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A+ FGL+   P  P+RI KNLRIC DCHS +K  S+I  R+ IVRD  RFHHF NGSCSC
Sbjct: 568 AIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSC 627

Query: 597 WDFW 600
            D+W
Sbjct: 628 MDYW 631



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 5/179 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L + +R  A   GK  H   +   +  D +  + LI+ Y+KCG I  A +VF+ +
Sbjct: 261 TLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGL 320

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +V+W+TII     +GR ++ +  F +M R G  P S+ T   +L AC+    V E 
Sbjct: 321 PKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMP-SDVTYIGLLSACSHAGLVNEG 379

Query: 155 KQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           +    H+  +     R    G  ++D+  + GL+ ++  +  +MP + ++V W +++  
Sbjct: 380 RWFFDHMVRVSGLEPRIEHYG-CMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGA 437


>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
          Length = 653

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/584 (36%), Positives = 327/584 (55%), Gaps = 19/584 (3%)

Query: 36  LQATLQSCARERAPVR---GKVCHAKIIGMGL---NNDTLTSNILINFYSKCGLISGARK 89
           L+A   S +  R P     G   HA+ +  G    ++ T+ +  +++FY+ C     ARK
Sbjct: 70  LKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARK 129

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACA-- 146
           VFD MP+R  V+WN +I  Y   GR +EA+ LF +M REG       +T  ++L      
Sbjct: 130 VFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGRE 189

Query: 147 --AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
             + R +     LH   +KA ++R+ FVG +L+ +YA    + DA   F+ +   + + W
Sbjct: 190 GGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVW 249

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           SSM++ +V  E  E AL++F       ++  QF  S+V   C  +  L  GKQVHA   K
Sbjct: 250 SSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLK 309

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           +    +    ++L+ MY+ CGC+ DA  VFS  +  NV+ +N+MIS   +H    E +  
Sbjct: 310 SNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEH 369

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M+ AGL P+E T ++++S+ +H G+V +G   F+ MV    + P   HY+C++D+L 
Sbjct: 370 FRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLA 429

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           R+G I +A   I  MPF+A A +W  +L +C  +R++E  +  A+ LF MEP  A N++L
Sbjct: 430 RSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYIL 489

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           L NIYA   RW E  + R L+ +  V K+ + SW+E+  +        R+HP   EIY  
Sbjct: 490 LGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRN 549

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L++L+  +K  GY P+     H+++  RK+E L +H EKLA  FG +    G  +RIMKN
Sbjct: 550 LDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKN 609

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+CGDCH   K+ S + GRE I+RD  RFHHF +G CSC D+W
Sbjct: 610 LRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 653


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/604 (36%), Positives = 343/604 (56%), Gaps = 50/604 (8%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           L SC+  R   R    HA ++  GL    D   +  L   Y+  G +  +  +       
Sbjct: 296 LTSCSTAR---RAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDP 352

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
             + + + I ++++ G    A+AL  +ML +G  P +  T+S+ L AC   R +   + L
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLP-TAHTLSASLPAC---RGLSPGRAL 408

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCG--------------------------------L 185
           H +A K A+  + +V TALL +YA+ G                                 
Sbjct: 409 HGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGA 468

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + DA  +F+ +P ++ V W++M+ G+ Q+    EAL LFRR    G+E ++ T+  V+ A
Sbjct: 469 LDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSA 528

Query: 246 CAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            A L  +  GK +H+ +  +     ++   ++L+DMY KCG + DA  VF GI +K++V+
Sbjct: 529 VAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVV 588

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN MI+G++ H  S + + +F + ++ GL P + T+I +L+ACSH GMVE+G+ +F  M 
Sbjct: 589 WNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSME 648

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           +++ + P + HY CM+D+LGRAGLI EA+ L+ +M     A MW SLLA+CR ++N+ L 
Sbjct: 649 REYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLG 708

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-- 482
           +  A  L      N+G ++LLSNIYAA   W EVAR R +++ S ++KE   S +EI   
Sbjct: 709 QQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDRE 768

Query: 483 ------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                 G  +HPR  EIY  L+K+   +K+ G+ P+TE  LHD++++ K++ L  HSEKL
Sbjct: 769 VYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKL 828

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           AL FGL+   PG  I+I+KNLR C DCH+ +K  SRI GR+ + RD NRFHHF +GSCSC
Sbjct: 829 ALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSC 888

Query: 597 WDFW 600
            D+W
Sbjct: 889 GDYW 892


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/505 (38%), Positives = 306/505 (60%), Gaps = 16/505 (3%)

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
            Y+ NG  +EA+ +++ ML     P   F  S+ L ACA  R+++  + +H   +K++  
Sbjct: 4   GYSKNGFLREALLVYVEMLWNCMEP-GNFAFSTALKACADLRELWVGRGVHAQVVKSSEG 62

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
            +  V   LL +Y +C   ++  +VF+ MPERN  +W+S+++GFV+ +   EAL +FRR 
Sbjct: 63  PDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRM 122

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q  G+ ++  T+++++  CA + AL+ GK++HA + K+    ++   +SLVDMY KCG V
Sbjct: 123 QREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVV 182

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
                +F G+  K++  WNTM++G++ +      M LF +M   G+ P++ T+I++LS C
Sbjct: 183 DYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGC 242

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           SH G+ E G+  F  M     V P++ HY+C++D+LGRAG I  A  ++ NMP   + S+
Sbjct: 243 SHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSI 302

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           WGSLL SCR +  + LAE  A +LF +EP N GN+++LSNIYA    W+ V   R++++ 
Sbjct: 303 WGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQT 362

Query: 468 SEVKKEKSKSWVEIKGK------------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEH 515
             ++KE   SW+++K K            RN     +I++KL    E M++ GY P T+ 
Sbjct: 363 RRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLR---EAMEEFGYIPNTDV 419

Query: 516 DLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
            LHDV +  K   +  HSE+LA  F L+    G+PIRI KNLR+C DCHS++K  SR+ G
Sbjct: 420 VLHDVNEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTG 479

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           R  ++RD NRFHHF  G+CSC D+W
Sbjct: 480 RVIVLRDTNRFHHFKEGACSCNDYW 504



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 141/282 (50%), Gaps = 3/282 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
               L++CA  R    G+  HA+++      D + +N L+  Y++C   +   KVFD+MP
Sbjct: 33  FSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMP 92

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R + SWN++I  +    +  EA+ +F  M REG   +S  T++++L  CA    +   K
Sbjct: 93  ERNVASWNSLISGFVKEDKLGEALDVFRRMQREG-MGFSWVTLTTILPICARVTALLSGK 151

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           ++H   +K+A   +V V  +L+D+Y KCG++    R+F+ M  ++  +W++M+ G+  N 
Sbjct: 152 EIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAING 211

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAA 274
               A+ LF      G+  +  T  +++  C+       G+++ H +    G   ++   
Sbjct: 212 YMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHY 271

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNV-VLWNTMISGFSRH 315
           + LVDM  + G +  A  V   +  K    +W ++++    H
Sbjct: 272 ACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLH 313



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 4/242 (1%)

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M  G+ +N    EAL+++       +E   F  S+ + ACA L  L  G+ VHA + K+ 
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSS 60

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
            G +    + L+ +Y +C C  +   VF  + E+NV  WN++ISGF +  +  E + +F 
Sbjct: 61  EGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFR 120

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +MQ+ G+  +  T  ++L  C+ +  +  GK     +VK     P+V   + ++D+  + 
Sbjct: 121 RMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSAR-RPDVLVLNSLVDMYVKC 179

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           G++     L   M      S W ++L   +   Y  + +         G+ PD+     L
Sbjct: 180 GVVDYGRRLFDGMRSKDLTS-WNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIAL 238

Query: 445 LS 446
           LS
Sbjct: 239 LS 240



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 4/218 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L  CAR  A + GK  HA+I+      D L  N L++ Y KCG++   R++FD M
Sbjct: 133 TLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGM 192

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + + SWNT++  Y  NG  + A+ LF  M   G  P  + T  ++L  C+      + 
Sbjct: 193 RSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRP-DDVTFIALLSGCSHAGLTEDG 251

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVAG-F 211
           ++L H   +   +  ++     L+D+  + G I  A  V ++MP +   + W S++    
Sbjct: 252 QKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCR 311

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
           + NE+     I  R  ++       + + S I A AG+
Sbjct: 312 LHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGM 349


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 336/587 (57%), Gaps = 24/587 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +C+   +   GK  HA II   +++D+   N L + YSK G +  + K F E 
Sbjct: 83  TLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRET 142

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ ++SW TII +   NGR    + LFI ML E   P ++FT++SVL  C+  +     
Sbjct: 143 GEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP-NDFTLTSVLSLCSTIQSSDLG 201

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ- 213
            Q+H  + K   + N+ +  +L+ +Y KCG I +A  +F  M  +N +TW++M+AG  Q 
Sbjct: 202 MQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQA 261

Query: 214 ----------NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
                      +   EAL ++ +    G + + FT+SS++  C+ LAAL QG+Q+HA   
Sbjct: 262 MDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTI 321

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           K+GF S++   ++LVDMY KCG +  A   F  +  + ++ W +MI+ F+RH +S   + 
Sbjct: 322 KSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQ 381

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LFE M+ AG  PN+ T++ VL+ACSH GMV++   YF++M K++ + P + HY C++D+ 
Sbjct: 382 LFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMF 441

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + EA+D+I  M  +    +W  L+A CRN+ N EL   AA+QL  ++P +   ++
Sbjct: 442 VRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYV 501

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           +L N+Y +  RWE+V+  R+L+++ +V K K  S + IKG+        R H   AE+++
Sbjct: 502 VLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAELHT 561

Query: 496 KLEKLVEEMKKLGYKP----ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
            L  LV+  K LGY+     E   D  +  + +     ++HSEKLA+TFGL+    G PI
Sbjct: 562 LLNDLVDRAKSLGYEQLENMEVIDDEEEEAEEKAFSSAVYHSEKLAVTFGLLNTPIGAPI 621

Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
           R++K++ +C DCH FMK  S    R  I++D  R H F NG CSC D
Sbjct: 622 RVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKRLHKFVNGQCSCAD 668



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 197/372 (52%), Gaps = 14/372 (3%)

Query: 54  VCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           + HA +I  G + +    + L+N Y+KCG++  ARKVFD +P+R +V W T++  Y  N 
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
           + + AV +F +ML  G  P S FT+S  L AC++   +   KQ H F +K  +  +  +G
Sbjct: 61  QPEVAVEVFGDMLESGSFP-SNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIG 119

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            AL  +Y+K G +  + + F    E++ ++W+++++    N      L LF       +E
Sbjct: 120 NALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVE 179

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            N FT++SV+  C+ + +   G QVH++  K G  SN+   +SLV +Y KCGC+ +A  +
Sbjct: 180 PNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNL 239

Query: 294 FSGIEEKNVVLWNTMISG-----------FSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           F+ +E KN++ WN MI+G           FS      E + ++ K+ ++G  P+  T  S
Sbjct: 240 FNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSS 299

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           +L+ CS +  +E+G+      +K    L +V   + ++D+  + G I  A    L+M   
Sbjct: 300 ILTVCSRLAALEQGEQIHAQTIKS-GFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTR 358

Query: 403 ATASMWGSLLAS 414
              S W S++ S
Sbjct: 359 TLIS-WTSMITS 369



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 2/274 (0%)

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H   +K       FV + L++VYAKCG++ +A +VF+++P RN V W++++ G+VQN  
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            E A+ +F      G   + FT+S  + AC+ L ++  GKQ HA + K     +    ++
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L  +Y+K G +  +   F    EK+V+ W T+IS    + R+   + LF +M    + PN
Sbjct: 122 LCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPN 181

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + T  SVLS CS I   + G     L  K  +   N+   + ++ +  + G I EA +L 
Sbjct: 182 DFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHE-SNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
             M +    + W +++A      +L     +A+Q
Sbjct: 241 NRMEYKNLIT-WNAMIAGHAQAMDLAKDNFSAQQ 273



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 13/186 (6%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L TL + L  C+R  A  +G+  HA+ I  G  +D +    L++ Y KCG I  ARK F
Sbjct: 293 DLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAF 352

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA----- 146
            +M  R ++SW ++I S+  +G+ Q A+ LF +M   G  P ++ T   VL AC+     
Sbjct: 353 LDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRP-NQITFVGVLAACSHAGMV 411

Query: 147 -AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTW 204
               + FE  Q   + +K  MD        L+D++ + G + +A  V + M  E NE  W
Sbjct: 412 DEALEYFEIMQKE-YKIKPVMDHY----GCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIW 466

Query: 205 SSMVAG 210
             ++AG
Sbjct: 467 LLLIAG 472


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 318/540 (58%), Gaps = 40/540 (7%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V WN +I  +  +GR + +   F++M+R      +  T  SVL AC   +D+    Q+H 
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMA-TAVTYVSVLSACGKGKDLLLGMQVHK 185

Query: 160 FALKAAMDRNVFVGTALLDVYAKCG-------------------------------LISD 188
             L++ +  +  V  AL+D+YA+CG                                +  
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDR 245

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  +F+ MPER+ + W++M+ G+VQ   + +AL  FR  Q+  +  ++FT+ SV+ ACA 
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQ 305

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L AL  G+     + + G   ++F  ++L+DMY+KCG +  A  VF  +  ++   W  +
Sbjct: 306 LGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAI 365

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I G + + R  E + +F +M +A   P+E T++ VL+AC+H G+V+KG+ +F  M + +N
Sbjct: 366 ILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYN 425

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           + P V HY C+ID+LGRAG + EA D I  MP    +++WG+LLASCR Y N E+ E+AA
Sbjct: 426 ISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAA 485

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG----- 483
           ++L  ++PDN+  ++LLSN+YA + RW++V R R++I +  +KKE   S +E+ G     
Sbjct: 486 ERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEF 545

Query: 484 ---KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
               R+HP   EIYSKLE ++ +++  GY P+    L +V +  KQ++L  HSEKLA+TF
Sbjct: 546 VAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTF 605

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            L+     V IRI+KNLR+C DCH+ +K  S++ GRE IVRD  RFHHF +GSCSC D+W
Sbjct: 606 ALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 178/410 (43%), Gaps = 46/410 (11%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
           SF     ASA A A      T  + L +C + +  + G   H +++  G+  D    N L
Sbjct: 148 SFVDMVRASAMATA-----VTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENAL 202

Query: 75  INFYSKCG----------------------LISG---------ARKVFDEMPQRCIVSWN 103
           ++ Y++CG                      +ISG         AR +FD MP+R  ++W 
Sbjct: 203 VDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWT 262

Query: 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK 163
            +I  Y   GR ++A+  F   ++  K    EFT+ SV+ ACA    +   +   ++  +
Sbjct: 263 AMIDGYVQVGRFRDALETF-RYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGR 321

Query: 164 AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALIL 223
             +  +VFVG AL+D+Y+KCG I  A  VF+ M  R++ TW++++ G   N   EEA+ +
Sbjct: 322 LGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDM 381

Query: 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYA 282
           F R        ++ T   V+ AC     + +G++    + +       +     L+D+  
Sbjct: 382 FYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLG 441

Query: 283 KCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           + G + +A      +  K N  +W T+++    +  S    +  E++ +  L P+  T  
Sbjct: 442 RAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLE--LDPDNSTAY 499

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            +LS      M  K   + D+   +  ++           ++   G+IHE
Sbjct: 500 ILLS-----NMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHE 544



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 156/356 (43%), Gaps = 46/356 (12%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL- 142
           +S AR + D +P R          S + +G E EAVA ++ ML  G  P   +T  S+L 
Sbjct: 5   LSRARSLLDGIPHR---RGRAASSSVSGHGAE-EAVAGYVRMLAGGARP-DAYTFPSLLK 59

Query: 143 ----CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE---- 194
                  AA         +H   +K  M+ N    ++L+ +YA  G  + A  V E    
Sbjct: 60  AAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACL 119

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
           +      V W+++++G  ++  +E +   F             T  SV+ AC     L+ 
Sbjct: 120 ATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLL 179

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---------------- 298
           G QVH  + ++G   +    ++LVDMYA+CG +  A+ +F G++                
Sbjct: 180 GMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVR 239

Query: 299 ---------------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
                          E++ + W  MI G+ +  R  + +  F  MQ   +  +E T +SV
Sbjct: 240 SGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSV 299

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++AC+ +G +E G+ +  + + +  +  +VF  + +ID+  + G I  A D+  +M
Sbjct: 300 VTACAQLGALETGE-WARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDM 354



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 112/266 (42%), Gaps = 29/266 (10%)

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI-- 243
           +S A  + + +P R     SS V+G       EEA+  + R    G   + +T  S++  
Sbjct: 5   LSRARSLLDGIPHRRGRAASSSVSGHGA----EEAVAGYVRMLAGGARPDAYTFPSLLKA 60

Query: 244 ---CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS----G 296
                 A +AA   G  +HA + K G  SN  AASSL+ MYA  G    A  V       
Sbjct: 61  AAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLA 120

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
                 V+WN +ISG +R  R       F  M +A       TY+SVLSAC       KG
Sbjct: 121 TGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACG------KG 174

Query: 357 KSYFDLM-----VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           K     M     V +  VLP+    + ++D+    G +  A+ L   M   + AS W S+
Sbjct: 175 KDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMAS-WTSV 233

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPD 437
           ++       ++     A+ LF   P+
Sbjct: 234 ISGLVRSGQVD----RARDLFDHMPE 255


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 344/596 (57%), Gaps = 15/596 (2%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKV--CHAKIIGMGLNNDTLTSNILIN 76
           S     ++N+N   L +L         +R+    +V   HA++I  G + D      L+ 
Sbjct: 13  SPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLR 72

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
             SKC  I  A ++F       +  +  +I  + ++G   +A+ L+  ML +   P   +
Sbjct: 73  SCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILP-DNY 131

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            ++S+L AC ++  + E +++H  ALK  +  N  V   ++++Y KCG + DA RVFE M
Sbjct: 132 LMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEM 191

Query: 197 PE----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           PE    ++ V W++M+ GFV+NE    AL  FR  Q   +  N+FTI  V+ AC+ L AL
Sbjct: 192 PEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGAL 251

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
             G+ VH+ + K     N+F  ++L++MY++CG + +A  VF  +++++V+ +NTMISG 
Sbjct: 252 EIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGL 311

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
           S + +S + + LF  M    L P   T++ VL+ACSH G+V+ G   F  M + + V P 
Sbjct: 312 SMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQ 371

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           + HY CM+D+LGR G + EAYDLI  M       M G+LL++C+ ++NLEL E  AK L 
Sbjct: 372 IEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLE 431

Query: 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GK 484
                ++G ++LLS++YA++ +W+E A+ R  ++++ ++KE   S +E+         G 
Sbjct: 432 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 491

Query: 485 RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
             HPR   IY KLE+L   ++  GY PE E  L D+ED  K+  L  HSE+LA+ +GL+ 
Sbjct: 492 LRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLIS 551

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             P   IR+MKNLR+C DCHS +K  ++I  R+ +VRD NRFH+F NG+CSC D+W
Sbjct: 552 TEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 334/594 (56%), Gaps = 42/594 (7%)

Query: 48  APVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107
           +P   +  HA++I  GL        +L++ Y+K  L+   R +FDE P+R +  +++++ 
Sbjct: 18  SPRSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLA 77

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
           + + +   +  + L   ML         F ++S+  A A  R +   KQLH   + +   
Sbjct: 78  AVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYS 137

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR-- 225
            +  V ++L+D+Y KCG+  DA +VF+S+  +N V W+++++G+V N   +EAL LFR  
Sbjct: 138 SDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSM 197

Query: 226 -------------------------------RAQVLGLEYNQFTISSVICACAGLAALIQ 254
                                          R   + ++ + F +SS I   A LAA + 
Sbjct: 198 PGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSID-DAFVLSSAIGGAADLAAHVL 256

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           G+Q+H++  + GF S+M   +++VDMY+KC  +  A  VF  I  ++++ W TM+ G ++
Sbjct: 257 GRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQ 316

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           H R+ E   L+++M  AG+ PNE T++ ++ ACSH G+V+KG+  FD M  ++ + P + 
Sbjct: 317 HGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQ 376

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           HY+C +D+L R+G + EA +LI  MP+    + W SLL++C+ Y N E++   A  L  +
Sbjct: 377 HYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLEL 436

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRN 486
            P     ++LLSN+YA N +W+ V   RKL+ D E++KE   SW+E+         G+  
Sbjct: 437 RPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVP 496

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
                EI   LE+LV EM++ GY P+T   +HD+E+  K+  L  HSE+LA+ FG++   
Sbjct: 497 IDLREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSP 556

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            G  IR++KNLR+C DCH+ MKF S I  R+ IVRD +RFHHF  G CSC +FW
Sbjct: 557 LGSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 321/577 (55%), Gaps = 54/577 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L++C+       G   HA ++  GL  D    +  I  Y+  G +  AR++ D+ 
Sbjct: 139 TYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK 198

Query: 95  PQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
                 V WN +I  Y                LR G+                A R++FE
Sbjct: 199 GGEVDAVCWNAMIDGY----------------LRFGEV--------------EAARELFE 228

Query: 154 CKQLHVFALKAAMDRNVF-VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
                        DR++     A++  +++CG++  A   F+ M ER+E++WS+M+ G++
Sbjct: 229 ----------GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYI 278

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q   + EAL +F + Q   +   +F + SV+ ACA L AL QG+ +H    +     +  
Sbjct: 279 QEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV 338

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +SLVDMYAKCG +  A+ VF  +  K V  WN MI G + H R+ + + LF KM    
Sbjct: 339 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD--- 395

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           ++PNE T++ VL+AC+H G+V+KG + F+ M K++ V P + HY C++D+LGRAGL+ EA
Sbjct: 396 INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA 455

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
             ++ ++P + T ++WG+LL +CR + N+EL E   K L  +EP N+G + LLSNIYA  
Sbjct: 456 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 515

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVE---------IKGKRNHPRIAEIYSKLEKLVEE 503
            RWEEV   RKL+++  +K     S ++         I G  +HP++ +IY  L+K+ E 
Sbjct: 516 GRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKER 575

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           ++  GY+P+    L D+++  K+  +  HSEKLA+ FGL+   PG  IRI+KNLR+C DC
Sbjct: 576 LQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDC 635

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           HS  K  S++  RE IVRD  R+HHF NG+CSC DFW
Sbjct: 636 HSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 17/277 (6%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGL-----ISDASRVFESMPERNEVTWSSMVA 209
           KQ H   L+    ++ ++  +L+  YA            + RVF+ + + N   W+ M+ 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
             ++N    +A++L+    V     N++T  +V+ AC+    + +G QVHA L K G G 
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           +    SS + MYA  G +V+A  +      E + V WN MI G+ R         LFE M
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
               +       IS  S C   GMVE  + +FD M ++  +      +S MID   + G 
Sbjct: 231 PDRSMISTWNAMISGFSRC---GMVEVAREFFDEMKERDEI-----SWSAMIDGYIQEGC 282

Query: 389 IHEAYDLILNMPFDATAS---MWGSLLASCRNYRNLE 422
             EA ++   M  +       +  S+L++C N   L+
Sbjct: 283 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 319


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 340/600 (56%), Gaps = 33/600 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           EL T  + LQ CA  ++   G+  H+ I    +  D +  + L+  Y  CG +   R++F
Sbjct: 100 ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIF 159

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG-------KTPYSEFTVSSVLC- 143
           D++    +  WN ++  Y   G  +E+++LF  M   G       +  + E     V+  
Sbjct: 160 DKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISW 219

Query: 144 -----------ACAAKRDVFECKQLHVFALKAAMDRNVFV----GTALLDVYAKCGLISD 188
                            D+FE  Q+ +  +   +   V V       LLD+Y+K G ++ 
Sbjct: 220 NSMISGYVSNGLSEKGLDLFE--QMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNS 277

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A +VFE+M ER+ V+W+SM+AG+ +  L + ++ LF   +   L  N  T++ ++ ACA 
Sbjct: 278 AIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACAS 337

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           LAAL +G+++H  + + GF  +   A++LVDMY KCG +  A  +F  I EK++V W  M
Sbjct: 338 LAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM 397

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+G+  H    E +  F +M+ +G+ P+E ++IS+L ACSH G++++G  +F++M     
Sbjct: 398 IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCC 457

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           + P   HY+C++D+L RAG + +AY  I  MP +  A++WG+LL  CR Y +++LAE  A
Sbjct: 458 IEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVA 517

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK---- 484
           + +F +EP+N G ++LL+NIYA   +WEEV + R+ I    ++K    SW+EIKGK    
Sbjct: 518 EHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 577

Query: 485 ----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
                +HP   +I   L+K    MK+ G+ P+  + L   +D+ K+  L  HSEK+A+ F
Sbjct: 578 VTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAF 637

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G++ L PG  +R+ KNLR+CGDCH   KF S++  R+ I+RD NRFHHF +GSCSC   W
Sbjct: 638 GILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 178/405 (43%), Gaps = 45/405 (11%)

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           N Y  C  I G   +  E     I  +N  I  +   G  + A+ L    + +   P  E
Sbjct: 46  NLYHSCATI-GTSVLPSETIDCKITDYNIEICRFCELGNLRRAMEL----INQSPKPDLE 100

Query: 136 F-TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
             T  SVL  CA  + + + +++H       ++ +  +G+ L+ +Y  CG + +  R+F+
Sbjct: 101 LRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD 160

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE--------YNQFTISSVICAC 246
            +       W+ ++ G+ +   + E+L LF+R + LG+         +++     VI   
Sbjct: 161 KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWN 220

Query: 247 AGLAALI------QGKQVHAVLCKTGFGSNMFAASS--------LVDMYAKCGCVVDAYF 292
           + ++  +      +G  +   +   G  +++    S        L+DMY+K G +  A  
Sbjct: 221 SMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQ 280

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF  + E++VV W +MI+G++R   S   + LF +M++  L PN  T   +L AC+ +  
Sbjct: 281 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAA 340

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHY-----SCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           +E+G+          ++L N F       + ++D+  + G +  A  L+ +M  +     
Sbjct: 341 LERGQEI------HGHILRNGFSLDRHVANALVDMYLKCGALGLAR-LLFDMIPEKDLVS 393

Query: 408 WGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           W  ++A      Y +  +A     +  G+EPD       +S +YA
Sbjct: 394 WTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS---FISILYA 435


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/582 (37%), Positives = 345/582 (59%), Gaps = 19/582 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   + +C      +R    HA  +  GL++     N LI  YSK G +  AR++F  +
Sbjct: 142 TLSGIITACGINVGLIRQ--LHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWL 199

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            + R  VSWN+++ +Y  +    +A+ L++ M   G      FT++SVL A    +D+  
Sbjct: 200 SEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLI-VDIFTLASVLTAFTNVQDLLG 258

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCG-LISDASRVFESMPERNEVTWSSMVAGF- 211
             Q H   +K+   +N  VG+ L+D+Y+KCG  + D  +VF+ +   + V W++M++G+ 
Sbjct: 259 GLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYS 318

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           +  +L +EAL  FR+ Q +G   +  ++  VI AC+ +++  QG+QVH +  K    SN 
Sbjct: 319 LYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNR 378

Query: 272 FAAS-SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            + + +L+ MY+KCG + DA  +F  + E N V +N+MI+G+++H    + + LF++M +
Sbjct: 379 ISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLE 438

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
               P   T+ISVL+AC+H G VE GK YF++M ++  + P   H+SCMID+LGRAG + 
Sbjct: 439 MDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLS 498

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA  LI  +PFD     W +LL +CR + N+ELA  AA +L  ++P NA  +++L+NIY+
Sbjct: 499 EAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYS 558

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVE 502
            N R ++ A  RKL+RD  VKK+   SW+E+  + +        HP I +I   LE+++ 
Sbjct: 559 DNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMR 618

Query: 503 EMKKLGYKPETEHDLHDVED---SRKQEL-LIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           ++KK+GY PE        +D    R++EL L HHSEKLA++FGLM    G PI + KNLR
Sbjct: 619 KIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLR 678

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           IC DCH+ +K+ S +  RE  VRD +RFH F +G CSC  +W
Sbjct: 679 ICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 149/476 (31%), Positives = 229/476 (48%), Gaps = 74/476 (15%)

Query: 33  LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV-- 90
           L + +  L++C   R    GK  HA  I   +   T  SN  +  YSKC  +S AR+V  
Sbjct: 8   LHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFD 67

Query: 91  -----------------------------FDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
                                        FDEMPQ   VS+NT+I +Y   G  Q A  L
Sbjct: 68  HTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQL 127

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F+ M RE       FT+S ++ AC    +V   +QLH  ++   +D  V VG AL+  Y+
Sbjct: 128 FLEM-REAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYS 184

Query: 182 KCGLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           K G + +A R+F  + E R+EV+W+SMV  ++Q+    +AL L+    V GL  + FT++
Sbjct: 185 KNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLA 244

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC-GCVVDAYFVFSGIEE 299
           SV+ A   +  L+ G Q HA L K+G+  N    S L+D+Y+KC GC++D   VF  I  
Sbjct: 245 SVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 300 KNVVLWNTMISGFSRHAR-SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
            ++VLWNTMISG+S +   S E +  F ++Q  G  P++ + + V+SACS++    +G+ 
Sbjct: 305 PDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQ 364

Query: 359 YFDLMVKQH-----------------------------NVLP--NVFHYSCMIDILGRAG 387
              L +K                               + +P  N   Y+ MI    + G
Sbjct: 365 VHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHG 424

Query: 388 LIHEAYDL---ILNMPFDATASMWGSLLASCRNYRNLELAEI---AAKQLFGMEPD 437
           +  ++  L   +L M F  T   + S+LA+C +   +E  +I     KQ FG+EP+
Sbjct: 425 MGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE 480



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 153/299 (51%), Gaps = 9/299 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC-GLISGARK 89
            ++ TL + L +    +  + G   HAK+I  G + ++   + LI+ YSKC G +   RK
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRK 297

Query: 90  VFDEMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
           VFDE+    +V WNT+I  Y+       EA+  F  +   G  P  + ++  V+ AC+  
Sbjct: 298 VFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRP-DDCSLVCVISACSNM 356

Query: 149 RDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
               + +Q+H  ALK  +  N + V  AL+ +Y+KCG + DA  +F++MPE N V+++SM
Sbjct: 357 SSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSM 416

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +AG+ Q+ +  ++L LF+R   +       T  SV+ ACA    +  GK ++  + K  F
Sbjct: 417 IAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGK-IYFNMMKQKF 475

Query: 268 GSNMFAA--SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMI 323
           G    A   S ++D+  + G + +A  +   I  +     W+ ++     H  +VE+ I
Sbjct: 476 GIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHG-NVELAI 533



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 134/276 (48%), Gaps = 7/276 (2%)

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           D NVF    L+  YAK   +  A ++F+ MP+ + V++++++A + +    + A  LF  
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            +   L+ + FT+S +I AC     LI  +Q+HA+   TG  S +   ++L+  Y+K G 
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNGF 188

Query: 287 VVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
           + +A  +F  + E+++ V WN+M+  + +H    + + L+ +M   GL  +  T  SVL+
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT 248

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           A +++  +  G  +   ++K      N    S +ID+  + G        + +   +   
Sbjct: 249 AFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 406 SMWGSLLASCRNYRNLE---LAEIAAKQLFGMEPDN 438
            +W ++++    Y +L    L      Q  G  PD+
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDD 343


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/567 (36%), Positives = 326/567 (57%), Gaps = 10/567 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C       +G++ H  ++  GL  + +  N L++ Y K G +S +R+V  +M
Sbjct: 347 TFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM 406

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
           P+R +V+WN +IG Y  +    +A+A F  M  EG +  +  TV SVL AC    D+ E 
Sbjct: 407 PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSS-NYITVVSVLSACLLPGDLLER 465

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K LH + + A  + +  V  +L+ +YAKCG +S +  +F  +  RN +TW++M+A    
Sbjct: 466 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 525

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +   EE L L  + +  G+  +QF+ S  + A A LA L +G+Q+H +  K GF  + F 
Sbjct: 526 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 585

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++  DMY+KCG + +   +      +++  WN +IS   RH    EV   F +M + G+
Sbjct: 586 FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGI 645

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P   T++S+L+ACSH G+V+KG +Y+D++ +   + P + H  C+ID+LGR+G + EA 
Sbjct: 646 KPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAE 705

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             I  MP      +W SLLASC+ + NL+    AA+ L  +EP++   ++L SN++A   
Sbjct: 706 TFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTG 765

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RWE+V   RK +    +KK+++ SWV++K        G R HP+  EIY+KLE + + +K
Sbjct: 766 RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 825

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY  +T   L D ++ +K+  L +HSE+LAL + LM    G  +RI KNLRIC DCHS
Sbjct: 826 ESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHS 885

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNG 592
             KF SR+ GR  ++RD  RFHHF  G
Sbjct: 886 VYKFVSRVIGRRIVLRDQYRFHHFERG 912



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 196/381 (51%), Gaps = 6/381 (1%)

Query: 35  TLQATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            + + + +C R  +  R G   H  +   GL +D   S  +++ Y   GL+S +RKVF+E
Sbjct: 43  VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 102

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R +VSW +++  Y+  G  +E + ++  M  EG    +E ++S V+ +C   +D   
Sbjct: 103 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEG-VGCNENSMSLVISSCGLLKDESL 161

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +Q+    +K+ ++  + V  +L+ +    G +  A+ +F+ M ER+ ++W+S+ A + Q
Sbjct: 162 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 221

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   EE+  +F   +    E N  T+S+++     +     G+ +H ++ K GF S +  
Sbjct: 222 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 281

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYA  G  V+A  VF  +  K+++ WN++++ F    RS++ + L   M  +G 
Sbjct: 282 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 341

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             N  T+ S L+AC      EKG+    L+V    +  N    + ++ + G+ G + E+ 
Sbjct: 342 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVS-GLFYNQIIGNALVSMYGKIGEMSESR 400

Query: 394 DLILNMP-FDATASMWGSLLA 413
            ++L MP  D  A  W +L+ 
Sbjct: 401 RVLLQMPRRDVVA--WNALIG 419



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 160/325 (49%), Gaps = 2/325 (0%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +++   + SC   +    G+    +++  GL +     N LI+     G +  A  +FD+
Sbjct: 144 NSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQ 203

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M +R  +SWN+I  +Y  NG  +E+  +F +++R      +  TVS++L           
Sbjct: 204 MSERDTISWNSIAAAYAQNGHIEESFRIF-SLMRRFHDEVNSTTVSTLLSVLGHVDHQKW 262

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            + +H   +K   D  V V   LL +YA  G   +A+ VF+ MP ++ ++W+S++A FV 
Sbjct: 263 GRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVN 322

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    +AL L       G   N  T +S + AC       +G+ +H ++  +G   N   
Sbjct: 323 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 382

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++LV MY K G + ++  V   +  ++VV WN +I G++      + +  F+ M+  G+
Sbjct: 383 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGV 442

Query: 334 HPNEQTYISVLSACSHIG-MVEKGK 357
             N  T +SVLSAC   G ++E+GK
Sbjct: 443 SSNYITVVSVLSACLLPGDLLERGK 467



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 164/329 (49%), Gaps = 12/329 (3%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF- 152
           MP R  VSWNT++      G   E +  F  M   G  P S F ++S++ AC     +F 
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKP-SSFVIASLVTACGRSGSMFR 59

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E  Q+H F  K+ +  +V+V TA+L +Y   GL+S + +VFE MP+RN V+W+S++ G+ 
Sbjct: 60  EGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
                EE + +++  +  G+  N+ ++S VI +C  L     G+Q+   + K+G  S + 
Sbjct: 120 DKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLA 179

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             +SL+ M    G V  A ++F  + E++ + WN++ + ++++    E   +F  M++  
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 239

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGL 388
              N  T  ++LS   H+   + G+    L+VK            C+ + L R    AG 
Sbjct: 240 DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM-----GFDSVVCVCNTLLRMYAGAGR 294

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRN 417
             EA  +   MP     S W SL+AS  N
Sbjct: 295 SVEANLVFKQMPTKDLIS-WNSLMASFVN 322


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 314/533 (58%), Gaps = 13/533 (2%)

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML-REGKTPYSEFT 137
           S  G +S A  +F  +P      WN +I     +     AV  +  M    G       T
Sbjct: 46  SSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALT 105

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            S  L ACA      E  QLH   L+   + +V + T LLD YAK G +  A ++F+ MP
Sbjct: 106 CSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMP 165

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGK 256
           + +  +W++++AGF Q     +A++ F+R +V G L  N  T+   + AC+ L AL +G+
Sbjct: 166 QPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGE 225

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            VH  + +    SN+   + ++DMYAKCG +  AY+VF  +  +K+++ WNTMI  F+ H
Sbjct: 226 SVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMH 285

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
               + + LFEK+ ++G+ P+  +Y++VL AC+H G+VE G   F+ M  Q  + PN+ H
Sbjct: 286 GDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMT-QRGLEPNIKH 344

Query: 376 YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435
           Y  M+D+LGRAG + EAYD++ ++PF     +W +LL +CR Y ++E+AE+A+++L  M 
Sbjct: 345 YGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMG 403

Query: 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNH 487
             + G  +LLSN+YAA +RW++V R R  +R  +VKK    S++EIKGK        ++H
Sbjct: 404 FISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSH 463

Query: 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCP 547
               EIY+KL+++   +K  GY  +T + LHD+ D  K+  L +HSEKLA+ FGL C   
Sbjct: 464 SSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEE 523

Query: 548 GVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           G PI+++KNLRICGDCH  +K  S+I  RE IVRD  RFH F  G CSC D+W
Sbjct: 524 GTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 160/312 (51%), Gaps = 8/312 (2%)

Query: 11  FYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT 70
           F+Y++ +      AS   +  +  T    L++CAR  A       H++++  G N D L 
Sbjct: 87  FWYRAMA------ASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLL 140

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
              L++ Y+K G +  A+K+FDEMPQ  I SWN +I  +    R  +A+  F  M  +G 
Sbjct: 141 QTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGN 200

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
              +  TV   L AC+    + E + +H + ++  +D NV V   ++D+YAKCG +  A 
Sbjct: 201 LRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAY 260

Query: 191 RVFESMP-ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            VFE+M  +++ +TW++M+  F  +    +AL LF +    G+  +  +  +V+CAC   
Sbjct: 261 WVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHA 320

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             +  G ++   + + G   N+    S+VD+  + G + +AY + S +   N+VLW T++
Sbjct: 321 GLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLL 380

Query: 310 SGFSRHARSVEV 321
            G  R    VE+
Sbjct: 381 -GACRTYGDVEM 391


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/634 (35%), Positives = 342/634 (53%), Gaps = 56/634 (8%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
             S A     A   A       A L  CA   +  R    HA  +   ++ D   +  L 
Sbjct: 7   LPSPASTRHPAGGGALTADRAAALLAGCA---SASRAAEIHAAAVRASVDQDKAVAFRLQ 63

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML--REGKTPY 133
             Y+  G +  A  +    P    V + + I ++++ G  + A+AL   ML  R G  P 
Sbjct: 64  RAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLP- 122

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY------------- 180
           +  T+S+ L AC     +   + LH +A+K A+    +V TALL +Y             
Sbjct: 123 TAHTLSASLPACGC---LAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALF 179

Query: 181 -------------------AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
                              AK G + DA  +F+++P ++ V W++M+ G+ Q+    EAL
Sbjct: 180 DGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEAL 239

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS----NMFAASSL 277
            LFR+    G+E ++ ++   + A A L     G+ +H+ +   G  +    N    ++L
Sbjct: 240 RLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTAL 299

Query: 278 VDMYAKCGCVVDAYFVF---SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           VDMY KCG + +A  VF    G  +++VV WN MI+G++ H RS E +  F +++  GL 
Sbjct: 300 VDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLW 359

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P + T+I VL+ACSH G+V++G++ F  M +++ ++P V HY CM+D+LGRAG + EA+D
Sbjct: 360 PTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFD 419

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           L+ +M     A+MW SLL +CR ++NL L +  A  L G    N+G ++LLSN+YAA  +
Sbjct: 420 LVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGK 479

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKK 506
           W EV R R ++R S V+KE   S VE        + G R+HPR AEIY+KLE++    + 
Sbjct: 480 WREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARA 539

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P TE  LHD++D+ K+  L  HSEKLAL FGL+   P   I+I+KNLR C DCH+ 
Sbjct: 540 RGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAV 599

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S   GR+ + RD NRFHHF +GSCSC D+W
Sbjct: 600 LKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 330/575 (57%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  A L +C+     + GK  H  I+      +    N LI  Y+KCG +  ++ +F  M
Sbjct: 172 TYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTM 231

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWN +I +YT  G +++A +LF  M   G TP   +T SS+L ACA+ + + + 
Sbjct: 232 DVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTP-DIYTFSSILGACASPKRLEDG 290

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + LHV       DR+  +   L+ ++ +CG +  A R F S+ ++    W++M+A + Q 
Sbjct: 291 RMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQF 350

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +  ++AL L++   + G   ++FT SSV+ +CA L AL +GK +H      GF  ++   
Sbjct: 351 DKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILG 410

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV+MYAKCG + DA   F GI  K+VV W+ MI+  ++H  + E + L   M   G+ 
Sbjct: 411 TALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIA 470

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            NE T  SVL ACSH G + +G  YF  + +   +  +  +    ID+LGRAG + EA  
Sbjct: 471 QNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEH 530

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           ++  MPF  +     +LL  C+ + ++   +   K++  +EP+N G+++LL+N+YAA  R
Sbjct: 531 VLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGR 590

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK- 505
           W++VA+ R+ +R   VK++   S +E +        G  ++PR  EI ++LE+L   MK 
Sbjct: 591 WDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKE 650

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY P+T    HDV D +K+ELL  HSEK+A+ FGL+   PG  +RI+KNLR+C DCH+
Sbjct: 651 EEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHT 710

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K AS+I GR  IVRD  RFHHF  G CSC D+W
Sbjct: 711 VGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 173/324 (53%), Gaps = 2/324 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +C +      G++   K   +G   D + +  LI+ ++KCG +  A  VF  M
Sbjct: 70  TLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSM 129

Query: 95  -PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              R I+S   +IG+Y  +G+   A+  +  M  +G  P   FT +++L AC++   + +
Sbjct: 130 GAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEP-DAFTYAAILGACSSPDFLLD 188

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H   L++    N+ V  AL+ +YAKCG + D+  +F +M  ++ V+W++M+A +  
Sbjct: 189 GKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTL 248

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               ++A  LF R   LG   + +T SS++ ACA    L  G+ +H  +   GF  +   
Sbjct: 249 YGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAM 308

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ M+ +CG +  A   F  IE+K +  WNTM++ +++  +  + + L++ M   G 
Sbjct: 309 QNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGF 368

Query: 334 HPNEQTYISVLSACSHIGMVEKGK 357
            P+  T+ SV+ +C+ +G + +GK
Sbjct: 369 TPDRFTFSSVVDSCASLGALREGK 392



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 166/292 (56%), Gaps = 2/292 (0%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           DT  +N++I  Y KC     AR+VFD + QR   SW+ ++  Y  N   QEA+ ++  M+
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R+ +     +T+SSVL AC    DV E + +   A +   +++V V T+L+ ++AKCG +
Sbjct: 61  RK-EISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCL 119

Query: 187 SDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
            +A  VF SM   R+ ++ ++M+  +V++   + AL  + + +  GLE + FT ++++ A
Sbjct: 120 EEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGA 179

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+    L+ GK +H  + ++    N+   ++L+ MYAKCG + D+  +F  ++ K+VV W
Sbjct: 180 CSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSW 239

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           N MI+ ++ +    +   LF +M   G  P+  T+ S+L AC+    +E G+
Sbjct: 240 NAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGR 291



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 155/291 (53%), Gaps = 3/291 (1%)

Query: 28  ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA 87
            +  ++ T  + L +CA  +    G++ H +I   G + D    N LI+ +++CG +  A
Sbjct: 266 GHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESA 325

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           R+ F  + ++ + +WNT++ +Y    + ++A+ L+ NML EG TP   FT SSV+ +CA+
Sbjct: 326 RRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTP-DRFTFSSVVDSCAS 384

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
              + E K +H  +     +++V +GTAL+++YAKCG ++DA + F+ +  ++ V+WS+M
Sbjct: 385 LGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAM 444

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-G 266
           +A   Q+   EEAL L     + G+  N+ T SSV+ AC+    L +G      L +  G
Sbjct: 445 IAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFG 504

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
              +       +D+  + G + +A  V   +  K + V   T++ G   H 
Sbjct: 505 IERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 555



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 133/247 (53%), Gaps = 3/247 (1%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           + F+   ++ +Y KC    DA +VF+ + +RN  +WS +V  +VQN +Y+EAL +++   
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
              +  + +T+SSV+ AC  L  + +G+ V     + GF  ++  A+SL+ ++AKCGC+ 
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 289 DAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
           +A  VF  +   ++++    MI  + RH ++   +  + KM+  GL P+  TY ++L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           S    +  GK     +++  +   N+   + +I +  + G + ++  L L M      S 
Sbjct: 181 SSPDFLLDGKHIHKHILESKH-FGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVS- 238

Query: 408 WGSLLAS 414
           W +++A+
Sbjct: 239 WNAMIAA 245


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/604 (35%), Positives = 338/604 (55%), Gaps = 48/604 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +CA       G   HA+I+ M  + D +  N LI+ Y+KCG +  A++VF  +
Sbjct: 280 TYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSL 339

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +   +SWN++I      G  ++A+ LF N +R       EF + ++L  C+        
Sbjct: 340 REHDHISWNSLITGVVHFGLGEDALILF-NQMRRSSVVLDEFILPTILGVCSGPDYASTG 398

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF--------------------- 193
           + LH + +K+ M  +  VG A++ +YAKCG    A  VF                     
Sbjct: 399 ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRS 458

Query: 194 ----------ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                     + MPERN VTW+SM++ +VQN   EE L L+   +  G++ +  T ++ I
Sbjct: 459 GDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSI 518

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            ACA LA +  G QV     K G   N+  A+S+V MY++CG + +A   F  I++K+++
Sbjct: 519 RACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLI 578

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN M++ F+++   ++V+  FE M +    PN  +Y+SVLS CSH+G+V +GK YFD M
Sbjct: 579 SWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSM 638

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
            +   + P   H+SCM+D+LGRAGL+ +A DLI  MPF   A++W +LL SCR + +L L
Sbjct: 639 TRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRL 698

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
           AE AAK+L  ++ + +  ++LLSN+Y+ +   + VA  RKL++   ++  +  SW+E+  
Sbjct: 699 AETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDN 758

Query: 484 K--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
           +         +HP+I E+Y KLE++++ ++  G     E  +H    S+K     +HSEK
Sbjct: 759 RVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVESSVH---RSKK-----YHSEK 810

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA  FGL+ L   +PI +MKNLR+C DCH  +K  S +  RE I+RD  RFHHF +G CS
Sbjct: 811 LAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICS 870

Query: 596 CWDF 599
           C D+
Sbjct: 871 CKDY 874



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 218/471 (46%), Gaps = 67/471 (14%)

Query: 8   KHKFYYKSFSSSAIASASANANATELSTLQAT--LQSCARERAPVRGKVCHAKIIGMGLN 65
           ++ F+ +SF + ++     N           T  +++C            HA +  +G  
Sbjct: 119 QNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFG 178

Query: 66  NDTLTSNILINFYSKCG----------------------LISG---------ARKVFDEM 94
            +T   N ++  Y KCG                      +I G         A ++F+ M
Sbjct: 179 METCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRM 238

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R  VSWNT+I  ++ +G   + +A+F+ M  +G +P +  T  SVL ACA+  D+   
Sbjct: 239 PERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSP-NFMTYGSVLSACASTSDLKWG 297

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
             LH   L+     ++  G  L+D+YAKCG +  A RVF+S+ E + ++W+S++ G V  
Sbjct: 298 AHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHF 357

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L E+ALILF + +   +  ++F + +++  C+G      G+ +H    K+G GS+    
Sbjct: 358 GLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVG 417

Query: 275 SSLVDMYAKCGCVVDAYFVF--------------------SG-----------IEEKNVV 303
           ++++ MYAKCG    A  VF                    SG           + E+N+V
Sbjct: 418 NAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIV 477

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN+M+S + ++  S E + L+  M+  G+ P+  T+ + + AC+ + +V+ G       
Sbjct: 478 TWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHA 537

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
            K   +  NV   + ++ +  R GLI EA +   ++  D     W ++LA+
Sbjct: 538 TK-FGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID-DKDLISWNAMLAA 586



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 160/375 (42%), Gaps = 67/375 (17%)

Query: 41  QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL----------------- 83
           Q     ++P   +  HA++I  GL++     N L++ YS CGL                 
Sbjct: 16  QCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIF 75

Query: 84  --------------ISGARKVFDEMPQRC--IVSWNTIIGSYTTNG---REQEAVALFIN 124
                         +S A K+FDEMP R    VSW T+I  Y+ NG   R  E  +L I 
Sbjct: 76  TWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIR 135

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
              +G   Y  F+ +SV+ AC +  D     QLH    K        +  +++ +Y KCG
Sbjct: 136 DTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCG 195

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR------------------ 226
            +  A  VF  +   +   W+SM+ G+ Q     +AL +F R                  
Sbjct: 196 DVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQ 255

Query: 227 ----AQVL---------GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
                Q L         G   N  T  SV+ ACA  + L  G  +HA + +     ++  
Sbjct: 256 HGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVF 315

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + L+DMYAKCGC+  A  VF  + E + + WN++I+G        + +ILF +M+++ +
Sbjct: 316 GNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSV 375

Query: 334 HPNEQTYISVLSACS 348
             +E    ++L  CS
Sbjct: 376 VLDEFILPTILGVCS 390



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 129/285 (45%), Gaps = 45/285 (15%)

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER--NEV 202
           C    D F+         +    RN+F    ++        +SDA ++F+ MP R  + V
Sbjct: 56  CGLTHDAFQ-------VFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSV 108

Query: 203 TWSSMVAGFVQNELYEEAL----ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +W++M++G+ QN  +  +     ++ R     G  Y+ F+ +SV+ AC  L       Q+
Sbjct: 109 SWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQL 168

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-------------------- 298
           HA++ K GFG      +S+V MY KCG V  A  VF  IE                    
Sbjct: 169 HALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGP 228

Query: 299 -----------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
                      E++ V WNT+IS FS+H   V+ + +F +M   G  PN  TY SVLSAC
Sbjct: 229 YKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSAC 288

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +    ++ G      +++  + L  VF  + +ID+  + G +  A
Sbjct: 289 ASTSDLKWGAHLHARILRMEHSLDLVFG-NGLIDMYAKCGCLDLA 332



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           +++HA L  +G  S++F  ++L+ MY+ CG   DA+ VF     +N+  WNTMI      
Sbjct: 28  RKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSS 87

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           +R  +   LF++M       +  ++ +++S  S  G   +    F LM++  N
Sbjct: 88  SRMSDAEKLFDEMPVRV--KDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTN 138


>gi|302770356|ref|XP_002968597.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
 gi|300164241|gb|EFJ30851.1| hypothetical protein SELMODRAFT_89230 [Selaginella moellendorffii]
          Length = 631

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/603 (37%), Positives = 340/603 (56%), Gaps = 18/603 (2%)

Query: 14  KSFSSSAIASASANANA---TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT 70
           ++ SS + A A+ N++    + ++   + LQ C R R+   G+  HA+I+  GL  D   
Sbjct: 31  EAVSSDSGAPAARNSSTFPPSRVAAFASLLQQCGRSRSLPDGRRIHAEIVDTGLGKDLFL 90

Query: 71  SNILINFYSKCGLISGARKVFDEMPQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
            N LI  Y KCG +  AR VF+++     +VSW  +I  +  +GRE  A+  F  M+ EG
Sbjct: 91  GNHLIQMYGKCGAMEDARAVFEKIESPNSVVSWTAMISGFALHGREDLALDFFRKMVAEG 150

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF-VGTALLDVYAKCGLISD 188
             P +E T  S+L ACAA RDV     +H     +   R+   VGTAL+D+Y KCG    
Sbjct: 151 VRP-NEVTFVSILGACAAARDVKHGTAIHELVESSEFGRSYLSVGTALIDMYGKCGRPEL 209

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           ASRVFE M  R+ V W++M+    Q  L E+AL LFR   + G   ++ T+ + + AC+ 
Sbjct: 210 ASRVFEKMERRDLVVWNAMITVCSQQGLDEQALRLFRVMDLEGHTPDEVTLVAALEACSN 269

Query: 249 LAALIQGKQVHAVLCKTGFGSN--MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           L +L  GK++H ++   G  S+  M  A++LV+MY + G + DA  VF  +   N+V W 
Sbjct: 270 LNSLAAGKKLHELILDAGLDSSIKMVLATALVNMYGRYGQLEDALRVFEKMNHWNLVAWT 329

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            +I+ F++H   V  + L  +M   G+  ++  ++SVL ACSH G++E G S F  MV  
Sbjct: 330 ALIAAFAQHG-DVHAIDLSWRMHLEGVQADDIVFLSVLHACSHAGVLEAGLSCFQGMVAD 388

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V     HYSCM+D+L R G + EA +L+ +MPF+       +LLA+CR   +      
Sbjct: 389 FGVRGGAAHYSCMVDLLARCGRVAEAEELLHSMPFEPAHMEMKTLLAACRVSGDTPRGAR 448

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
            A+   G+ P +A  ++L+S+ YAA  +W+EVA  R+ +    VKK +  S VE+K + +
Sbjct: 449 VARLASGLIPLDAAPYVLMSHAYAAAEKWDEVAEVRERMAKLGVKKPRGWSCVEVKNRVH 508

Query: 487 ---------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                    H   AEI  +L +L   +K+ GY P+T    H V++  K++LL  HSE++A
Sbjct: 509 QFFAGNFSWHSEAAEIEVELRRLQAVVKEAGYVPDTGQIGHCVQEDDKEDLLALHSERVA 568

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+ +  G+PI ++KNLR+C DCH+  K  SR  GR  +VRD  RFH F NG+CSC 
Sbjct: 569 IAFGLLRVPAGLPIHVVKNLRVCSDCHAVAKIISRSVGRRIVVRDAYRFHRFENGTCSCG 628

Query: 598 DFW 600
           D+W
Sbjct: 629 DYW 631


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/591 (36%), Positives = 336/591 (56%), Gaps = 51/591 (8%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA ++  GL++  + +  L   Y+  G +  +  +F   P   +  W  II ++      
Sbjct: 43  HAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLF 102

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             A++ +  ML     P + FT+SS+L AC     +   + +H  A+K  +  +++V T 
Sbjct: 103 HHALSYYSQMLTHPIQP-NAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTG 157

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVT-------------------------------W 204
           L+D YA+ G ++ A ++F++MPER+ V+                               W
Sbjct: 158 LVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCW 217

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLG-------LEYNQFTISSVICACAGLAALIQGKQ 257
           + M+ G+ Q+    EAL+ FR+  ++        +  N+ T+ +V+ +C  + AL  GK 
Sbjct: 218 NVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKW 277

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH+ +   G   N+   ++LVDMY KCG + DA  VF  +E K+VV WN+MI G+  H  
Sbjct: 278 VHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGF 337

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           S E + LF +M   G+ P++ T+++VL+AC+H G+V KG   FD M   + + P V HY 
Sbjct: 338 SDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYG 397

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
           CM+++LGRAG + EAYDL+ +M  +    +WG+LL +CR + N+ L E  A+ L      
Sbjct: 398 CMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLA 457

Query: 438 NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPR 489
           ++G ++LLSN+YAA R W  VA+ R +++ S V+KE   S +E+K        G R HPR
Sbjct: 458 SSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPR 517

Query: 490 IAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV 549
             +IYS LEK+   +K+  Y P+T+  LHD+ +  K++ L  HSEKLAL FGL+   PG 
Sbjct: 518 SKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGA 577

Query: 550 PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            I+I+KNLR+C DCH+ MK  S+I+GR+ I+RD NRFHHF NGSCSC D+W
Sbjct: 578 AIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 47/316 (14%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L++C    A    +  H+  I  GL++    S  L++ Y++ G ++ A+K+FD M
Sbjct: 123 TLSSLLKACTLHPA----RAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAM 178

Query: 95  PQRCIVS-------------------------------WNTIIGSYTTNGREQEAVALF- 122
           P+R +VS                               WN +I  Y  +G   EA+  F 
Sbjct: 179 PERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFR 238

Query: 123 -----INMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRNVFVGTAL 176
                +     GK   +E TV +VL +C  +    EC K +H +     +  NV VGTAL
Sbjct: 239 KMMMMMGGNGNGKVRPNEITVVAVLSSC-GQVGALECGKWVHSYVENNGIKVNVRVGTAL 297

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +D+Y KCG + DA +VF+ M  ++ V W+SM+ G+  +   +EAL LF     +G++ + 
Sbjct: 298 VDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSD 357

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFG--SNMFAASSLVDMYAKCGCVVDAYFVF 294
            T  +V+ ACA    + +G +V   + K G+G    +     +V++  + G + +AY + 
Sbjct: 358 ITFVAVLTACAHAGLVSKGWEVFDSM-KDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLV 416

Query: 295 SGIE-EKNVVLWNTMI 309
             +E E + VLW T++
Sbjct: 417 RSMEVEPDPVLWGTLL 432



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 43/275 (15%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           Q+H   L+  +  +  +   L   YA  G +  +  +F   P  N   W+ ++      +
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
           L+  AL  + +     ++ N FT+SS++ AC     L   + VH+   K G  S+++ ++
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVST 156

Query: 276 SLVDMYAKCGCVV-------------------------------DAYFVFSGIEEKNVVL 304
            LVD YA+ G V                                +A  +F G+  K+VV 
Sbjct: 157 GLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVC 216

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAG-------LHPNEQTYISVLSACSHIGMVEKGK 357
           WN MI G+++H    E ++ F KM           + PNE T ++VLS+C  +G +E GK
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            +    V+ + +  NV   + ++D+  + G + +A
Sbjct: 277 -WVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDA 310



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 140/343 (40%), Gaps = 63/343 (18%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ A L SC +  A   GK  H+ +   G+  +      L++ Y KCG +  ARKVFD M
Sbjct: 258 TVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVM 317

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V+WN++I  Y  +G   EA+ LF  M   G  P S+ T  +VL AC         
Sbjct: 318 EGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKP-SDITFVAVLTAC--------- 367

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-----ERNEVTWSSMVA 209
                                     A  GL+S    VF+SM      E     +  MV 
Sbjct: 368 --------------------------AHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVN 401

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG- 268
              +    +EA  L R  +V   E +     +++ AC   + +  G+++  +L   G   
Sbjct: 402 LLGRAGRMQEAYDLVRSMEV---EPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLAS 458

Query: 269 -------SNMFAASSLVDMYAKC-----GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
                  SNM+AA+      AK      G  V+     S IE KN V  +  ++G  RH 
Sbjct: 459 SGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRV--HEFVAGDRRHP 516

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSH-IGMVEKGKS 358
           RS ++  + EKM        E+ Y     A  H IG  EK +S
Sbjct: 517 RSKDIYSMLEKMNGW---LKERHYTPKTDAVLHDIGEQEKEQS 556


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 339/588 (57%), Gaps = 16/588 (2%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           S+  N T  S+L + L  C   +     K   A  I   L ND      LIN  ++    
Sbjct: 18  SSYYNTTYPSSLLSCLPKCTSLK---ELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTT 74

Query: 85  SG---ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141
           +    A ++F+ +PQ  IV +N++   Y+ +    +A++LFI  L     P  ++T  S+
Sbjct: 75  ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLP-DDYTFPSL 133

Query: 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
           L AC   +   + KQLH  A+K  ++ N +V   L+++YA C  +  A RVF+ + E   
Sbjct: 134 LKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCV 193

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V++++++ G+ ++    EAL LFR+ Q   L+ N  T+ SV+ +CA L AL  GK +H  
Sbjct: 194 VSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEY 253

Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + K G    +   ++L+DMYAKCG +  A  VF  +  ++   W+ MI  ++ H +  +V
Sbjct: 254 VKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDV 313

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           M +FE+M +A + P+E T++ +L ACSH G+V++G  YF  M + + ++P + HY CM+D
Sbjct: 314 MSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVD 373

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +LGRAGL+HEAY  I  +P   T  +W +LL+SC ++ NLELA+    Q+  ++  + G+
Sbjct: 374 LLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGD 433

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEI 493
           +++LSN+ A   +WE+V   RKL+      K    S +E+         G   H     +
Sbjct: 434 YVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTAL 493

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLH-DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           +  L++LV+E+K +GY P+T   +H D+ED  K+  L +HSEKLA++FGL+   PG  IR
Sbjct: 494 HRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIR 553

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           ++KNLR+CGDCHS  K  S +  RE I+RD+ RFHHF +G CSC D+W
Sbjct: 554 VVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 332/608 (54%), Gaps = 45/608 (7%)

Query: 35  TLQATLQSCAR--ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           T    L++ AR    APVR    H    GMG N    TS  L+  Y+  G  + AR +  
Sbjct: 45  TFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATS--LVTAYAAGGDGAAARALLS 102

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-AKRDV 151
           E  +   V WN +I  +    R  EA   F++M R G  P +  T  SVL AC     DV
Sbjct: 103 ERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAP-TPVTYVSVLSACGKGTGDV 161

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKC---------------------------- 183
               Q+H   + + +  ++ V  AL+D+YA+C                            
Sbjct: 162 LLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGL 221

Query: 184 ---GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
              G + +A  +F  MPER+ V+W++M+ G+VQ   + EAL +FR  Q   +  ++FT+ 
Sbjct: 222 TRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMV 281

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           SVI ACA L AL  G+ V   + + G   + F  ++L+DMY+KCG +  A  VF  +  +
Sbjct: 282 SVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR 341

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           +   W  +I G + +    E + +F +M      P+E T+I VL+AC+H G+V+KG+ +F
Sbjct: 342 DKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFF 401

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             M + +N+ PNV HY C+ID+ GRAG I EA D I  MP    +++WG+LLA+CR + N
Sbjct: 402 LSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGN 461

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
            E+ E+  ++L  M+P+N+  + LLSNIYA   RWE+V R R  I +  +KKE   S +E
Sbjct: 462 SEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIE 521

Query: 481 --------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
                   + G ++HP   EIY KLE ++ ++  +GY P+      +V +  KQ++L  H
Sbjct: 522 MNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWH 581

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ F L+   P   IRI+KNLR+C DCH+ +K  SR+ GRE +VRD  RFHHF +G
Sbjct: 582 SEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHG 641

Query: 593 SCSCWDFW 600
            CSC D+W
Sbjct: 642 FCSCKDYW 649



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 156/345 (45%), Gaps = 46/345 (13%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           AR++ + +P+RC+V+              ++AVA +  ML  G  P   +T   +L A A
Sbjct: 8   ARRLLEGIPRRCLVA------------AREDAVAGYARMLARGAMP-DAYTFPPLLKAVA 54

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
                   + +H   +K  M RN  V T+L+  YA  G  + A  +         V W++
Sbjct: 55  RGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNA 114

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA-GLAALIQGKQVHAVLCKT 265
           +++G  +   + EA   F      G      T  SV+ AC  G   ++ G QVH  +  +
Sbjct: 115 LISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGS 174

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--------------------------- 298
           G   ++   ++LVDMYA+C  +  A+ +F G++                           
Sbjct: 175 GVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLF 234

Query: 299 ----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
               E++ V W  MI G+ + AR  E + +F +MQ + +  +E T +SV++AC+ +G +E
Sbjct: 235 GRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALE 294

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            G+ +  + + +  +  + F  + +ID+  + G I  A D+  +M
Sbjct: 295 MGE-WVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 111/255 (43%), Gaps = 29/255 (11%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A R+ E +P R       +VA        E+A+  + R    G   + +T   ++ A A 
Sbjct: 8   ARRLLEGIPRR------CLVAA------REDAVAGYARMLARGAMPDAYTFPPLLKAVAR 55

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
            ++    + VHA + K G G N   A+SLV  YA  G    A  + S  E    V+WN +
Sbjct: 56  GSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH------IGMVEKGKSYFDL 362
           ISG +R  R  E    F  M +AG  P   TY+SVLSAC        +GM   G+     
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGR----- 170

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
            V    VLP++   + ++D+      +  A+ L   M   +  S W SLL+       ++
Sbjct: 171 -VVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVS-WTSLLSGLTRLGRVD 228

Query: 423 LAEIAAKQLFGMEPD 437
                A+ LFG  P+
Sbjct: 229 ----EARDLFGRMPE 239


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 346/592 (58%), Gaps = 17/592 (2%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           S +   S + +   ++T+ +  +    ER    G+  H  ++      D   +N LI  Y
Sbjct: 288 SMMRELSVDPDLITMTTVASACELLDNERL---GRGVHGYVVKSEFGGDISMNNSLIQMY 344

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
           S  G +  A  VF  M  + +VSW  +I S  ++    +AV  +  M  EG  P  E T+
Sbjct: 345 SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILP-DEITL 403

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
            SVL ACA    +    +LH  A+K  +  +V V  +L+D+Y+KC  + +A  VF ++  
Sbjct: 404 VSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISG 463

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +N V+W+S++ G   N    EAL+ FR+ +   ++ N  T+ SV+ ACA + AL++GK++
Sbjct: 464 KNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEI 522

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA   +TG G + F  ++++DMY +CG  V A   F+  ++K+V  WN +++G+++  ++
Sbjct: 523 HAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQA 581

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
              + LF+KM +  +HP+E T+IS+L ACS  GMV +G  YF++M  ++N+ PN+ HY+C
Sbjct: 582 KLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYAC 641

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           ++DILGRAG + +AYD I +MP    A++WG+LL +CR +RN+EL EIAAK++F  +  +
Sbjct: 642 VVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKS 701

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRI 490
            G ++LL N+YA    W++V++ R L+R+  +  +   SWVEIKGK         +H + 
Sbjct: 702 VGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQS 761

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
            EI   L+    +MK+ G+         ++E SR  ++   HSE+ A+ FGL+   PG+P
Sbjct: 762 KEINGVLDGFCSKMKENGFGNLKSSFTSEIESSR-ADIFCGHSERQAIAFGLINTAPGMP 820

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD--FW 600
           I + KNL +C  CH+ +KF S I  RE  VRD+  +HHF +G CSC D  +W
Sbjct: 821 IWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 218/409 (53%), Gaps = 15/409 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++CA      RGK  HA +I  G  +D    N LI  Y KCG IS AR +FD+M
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R  +SWN +I  Y  NG   E + LF +M+RE        T+++V  AC    +    
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELF-SMMRELSVDPDLITMTTVASACELLDNERLG 318

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H + +K+    ++ +  +L+ +Y+  G + +A  VF  M  ++ V+W++M+A  V +
Sbjct: 319 RGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH 378

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +L  +A+  ++  ++ G+  ++ T+ SV+ ACA +  L  G ++H +  KTG  S++  +
Sbjct: 379 KLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVS 438

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+DMY+KC CV +A  VF  I  KNVV W ++I G   + RS E ++ F +M+++ + 
Sbjct: 439 NSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MK 497

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ----HNVLPNVFHYSCMIDILGRAGLIH 390
           PN  T ISVLSAC+ IG + +GK      ++        LPN      ++D+  R G   
Sbjct: 498 PNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRCGRKV 552

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELA-EIAAKQL-FGMEPD 437
            A +   +   D TA  W  LL         +LA E+  K L   + PD
Sbjct: 553 PALNQFNSQKKDVTA--WNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 225/447 (50%), Gaps = 14/447 (3%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L+ C   RAP  G   +  +            N L++ + + G +  A  VF +M +R
Sbjct: 102 ALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSER 161

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + SWN ++G Y   G   EA+ L+  ML     P + +T  SVL  CA   D+   K++
Sbjct: 162 DVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRP-NVYTFPSVLKTCAGVSDIARGKEI 220

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   ++   + +V VG AL+ +Y KCG IS+A  +F+ MP+R+ ++W++M++G+ +N   
Sbjct: 221 HAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            E L LF   + L ++ +  T+++V  AC  L     G+ VH  + K+ FG ++   +SL
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY+  G + +A  VFS +E K+VV W  MI+    H    + +  ++ M+  G+ P+E
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T +SVLSAC+ IG ++ G    ++ +K   ++ +V   + +ID+  +   +  A ++  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKT-GLVSHVIVSNSLIDMYSKCKCVDNALEVFR 459

Query: 398 NMPFDATASMWGSLLASCR-NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
           N+      S W SL+   R N R+ E      +    M+P    N + L ++ +A     
Sbjct: 460 NISGKNVVS-WTSLILGLRINNRSFEALLFFRQMKESMKP----NSVTLISVLSA----- 509

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIKG 483
             AR   L+R  E+     ++ V   G
Sbjct: 510 -CARIGALMRGKEIHAHALRTGVGFDG 535


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 328/576 (56%), Gaps = 12/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLN-NDTLTSNILINFYSKCGLISGARKVFDE 93
           T  A  ++ +       G+  H   + +G   +D   +  +++ Y+K G +  AR VFD 
Sbjct: 103 TFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDR 162

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  + +V +  +I  Y   G + EA+ +F +M+     P +E+T++SVL +C    D+  
Sbjct: 163 VLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKP-NEYTLASVLVSCGNLGDLVN 221

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H   +K+ ++  V   T+LL +Y+KC ++ D+ +VF S+   + VTW+S + G VQ
Sbjct: 222 GKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQ 281

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N   E AL +FR      +  N FT SS++ AC+ LA L  G+Q+HAV  K G   N + 
Sbjct: 282 NGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYV 341

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ +Y KCG V  A  VF  + E +VV  NTMI  ++++    E + LFE+M++ G 
Sbjct: 342 DAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGH 401

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T+IS+L AC++ G+VE+G   F L+   H++     HY+CMID+LGRA    EA 
Sbjct: 402 KPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAA 461

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            LI     +     W +LL +C+ +  +E+AE   K++    P + G H+LL+NIYA+  
Sbjct: 462 MLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAG 520

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           +W+ V   +   RD  +KK  + SWV+I         G  +HPR  EI   L +L+E++ 
Sbjct: 521 KWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVI 580

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC-PGVPIRIMKNLRICGDCH 564
            LGY P+T+  L D+E+ +K   L +HSEKLA+ F L   C     IRI KNLR+CGDCH
Sbjct: 581 TLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCH 640

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S++KF S + GR+ I RD  RFHHF  G CSC D+W
Sbjct: 641 SWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 206/368 (55%), Gaps = 8/368 (2%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           LI+ Y KC +I+ ARK+FDEMP R IV+WN++I S+ + G+ +EA+ L+ NML EG  P 
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLP- 99

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRV 192
             +T S++  A +      E ++ H  A+    +  + FV T ++D+YAK G + DA  V
Sbjct: 100 DAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFV 159

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           F+ + +++ V +++++ G+ Q  L  EAL +F       ++ N++T++SV+ +C  L  L
Sbjct: 160 FDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDL 219

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGF 312
           + GK +H ++ K+G  S + + +SL+ MY+KC  V D+  VF+ +   + V W + I G 
Sbjct: 220 VNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGL 279

Query: 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372
            ++ R    + +F +M +  + PN  T+ S+L ACS + M+E G+    + VK   V  N
Sbjct: 280 VQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKL-GVDGN 338

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN---YRNLELAEIAAK 429
            +  + +I + G+ G + +A  +  ++      S+   + A  +N   +  LEL E   K
Sbjct: 339 KYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKK 398

Query: 430 QLFGMEPD 437
              G +P+
Sbjct: 399 --LGHKPN 404



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           +S++     K+ +   K LH   LK+      F G  L+D Y KC +I++A ++F+ MP 
Sbjct: 5   TSLIAQFTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPN 63

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           R+ VTW+SM++  V     +EA+ L+      G+  + +T S++  A + +    +G++ 
Sbjct: 64  RHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKA 123

Query: 259 HAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           H +    GF  S+ F A+ +VDMYAK G + DA FVF  + +K+VVL+  +I G+++   
Sbjct: 124 HGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGL 183

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             E + +FE M  + + PNE T  SVL +C ++G +  GK    L+VK
Sbjct: 184 DGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVK 231


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 335/577 (58%), Gaps = 43/577 (7%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ T    L++ +R  +   G   H  ++ +GL+ +    N LI  Y KC  +  A++V 
Sbjct: 119 DMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           DE+P R +VSWN+++  Y  NGR  +A+ L   M      P ++ T++S+L A       
Sbjct: 179 DEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKP-NDCTMASLLPAVT----- 232

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                          D  ++V                   +F  + +++ ++W+ M+A +
Sbjct: 233 -----------NTTSDNVLYV-----------------KEMFLKLTKKSVISWNVMIAMY 264

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           V N + +EA++L+ + +  G+E +  +I SV+ A   L+AL  G++VH    +     N+
Sbjct: 265 VNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNL 324

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++L+DMYAKCGC+ DA  VF+ ++ ++VV W ++IS + +  +  + + +F +M+ +
Sbjct: 325 LLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNS 384

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           GL+P+   ++SVL+ACSH G+++ G+ YF+LM  +  + P + H++C++D+LGRAG I E
Sbjct: 385 GLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDE 443

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY  I  MP +    +WG LL++CR Y N+ +  +AA +L  + P+++G ++LLSNIYA 
Sbjct: 444 AYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAK 503

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
             RW +VA  R ++    +KK    S VE+         G  +HP+  +IY +L+ LV +
Sbjct: 504 AGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGK 563

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           MK+LGY PET+  LHDVE+  K+  L  HSEKLA+ F ++   PG PIR+ KNLR+CGDC
Sbjct: 564 MKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDC 623

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H   K  S+IA RE I+RD +RFHHF  G CSC D+W
Sbjct: 624 HVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 108/201 (53%), Gaps = 1/201 (0%)

Query: 150 DVFECKQLHVFALKAAMDR-NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           D+   K+LH   L     R N  VG  L+ VYA CG    A  +F+ + ++N V ++ M+
Sbjct: 33  DINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMI 92

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
             +V N LY++AL++++     G   + +T   V+ A +   +L  G Q+H  + K G  
Sbjct: 93  RSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLD 152

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            N++  + L+ MY KC  + +A  V   I  ++VV WN+M+S ++++ R  + + L  +M
Sbjct: 153 LNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREM 212

Query: 329 QQAGLHPNEQTYISVLSACSH 349
           +   L PN+ T  S+L A ++
Sbjct: 213 EALNLKPNDCTMASLLPAVTN 233


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 346/592 (58%), Gaps = 17/592 (2%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           S +   S + +   ++T+ +  +    ER    G+  H  ++      D   +N LI  Y
Sbjct: 288 SMMRELSVDPDLITMTTVASACELLDNERL---GRGVHGYVVKSEFGGDISMNNSLIQMY 344

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
           S  G +  A  VF  M  + +VSW  +I S  ++    +AV  +  M  EG  P  E T+
Sbjct: 345 SSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILP-DEITL 403

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
            SVL ACA    +    +LH  A+K  +  +V V  +L+D+Y+KC  + +A  VF ++  
Sbjct: 404 VSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISG 463

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           +N V+W+S++ G   N    EAL+ FR+ +   ++ N  T+ SV+ ACA + AL++GK++
Sbjct: 464 KNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEI 522

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           HA   +TG G + F  ++++DMY +CG  V A   F+  ++K+V  WN +++G+++  ++
Sbjct: 523 HAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQA 581

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
              + LF+KM +  +HP+E T+IS+L ACS  GMV +G  YF++M  ++N+ PN+ HY+C
Sbjct: 582 KLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYAC 641

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           ++DILGRAG + +AYD I +MP    A++WG+LL +CR +RN+EL EIAAK++F  +  +
Sbjct: 642 VVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKS 701

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRI 490
            G ++LL N+YA    W++V++ R L+R+  +  +   SWVEIKGK         +H + 
Sbjct: 702 VGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQS 761

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
            EI   L+    +MK+ G+         ++E SR  ++   HSE+ A+ FGL+   PG+P
Sbjct: 762 KEINGVLDGFCSKMKENGFGNLKSSFTSEIESSR-ADIFCGHSERQAIAFGLINTAPGMP 820

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD--FW 600
           I + KNL +C  CH+ +KF S I  RE  VRD+  +HHF +G CSC D  +W
Sbjct: 821 IWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 218/409 (53%), Gaps = 15/409 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++CA      RGK  HA +I  G  +D    N LI  Y KCG IS AR +FD+M
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R  +SWN +I  Y  NG   E + LF +M+RE        T+++V  AC    +    
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELF-SMMRELSVDPDLITMTTVASACELLDNERLG 318

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H + +K+    ++ +  +L+ +Y+  G + +A  VF  M  ++ V+W++M+A  V +
Sbjct: 319 RGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH 378

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           +L  +A+  ++  ++ G+  ++ T+ SV+ ACA +  L  G ++H +  KTG  S++  +
Sbjct: 379 KLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVS 438

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+DMY+KC CV +A  VF  I  KNVV W ++I G   + RS E ++ F +M+++ + 
Sbjct: 439 NSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MK 497

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ----HNVLPNVFHYSCMIDILGRAGLIH 390
           PN  T ISVLSAC+ IG + +GK      ++        LPN      ++D+  R G   
Sbjct: 498 PNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRCGRKV 552

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELA-EIAAKQL-FGMEPD 437
            A +   +   D TA  W  LL         +LA E+  K L   + PD
Sbjct: 553 PALNQFNSQKKDVTA--WNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 225/447 (50%), Gaps = 14/447 (3%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L+ C   RAP  G   +  +            N L++ + + G +  A  VF +M +R
Sbjct: 102 ALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSER 161

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + SWN ++G Y   G   EA+ L+  ML     P + +T  SVL  CA   D+   K++
Sbjct: 162 DVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRP-NVYTFPSVLKTCAGVSDIARGKEI 220

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   ++   + +V VG AL+ +Y KCG IS+A  +F+ MP+R+ ++W++M++G+ +N   
Sbjct: 221 HAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGG 280

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            E L LF   + L ++ +  T+++V  AC  L     G+ VH  + K+ FG ++   +SL
Sbjct: 281 LEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY+  G + +A  VFS +E K+VV W  MI+    H    + +  ++ M+  G+ P+E
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T +SVLSAC+ IG ++ G    ++ +K   ++ +V   + +ID+  +   +  A ++  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKT-GLVSHVIVSNSLIDMYSKCKCVDNALEVFR 459

Query: 398 NMPFDATASMWGSLLASCR-NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456
           N+      S W SL+   R N R+ E      +    M+P    N + L ++ +A     
Sbjct: 460 NISGKNVVS-WTSLILGLRINNRSFEALLFFRQMKESMKP----NSVTLISVLSA----- 509

Query: 457 EVARARKLIRDSEVKKEKSKSWVEIKG 483
             AR   L+R  E+     ++ V   G
Sbjct: 510 -CARIGALMRGKEIHAHALRTGVGFDG 535


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 343/587 (58%), Gaps = 11/587 (1%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           +   +  A E++ L A +  C  E      K  H   +      + L +N  +  Y+KCG
Sbjct: 386 AGGEDVKADEVTILNA-VPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG 444

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            +S A++VF  +  + + SWN +IG +  +   + ++   + M   G  P S FTV S+L
Sbjct: 445 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDS-FTVCSLL 503

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            AC+  + +   K++H F ++  ++R++FV  ++L +Y  CG +     +F++M +++ V
Sbjct: 504 SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLV 563

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W++++ G++QN   + AL +FR+  + G++    ++  V  AC+ L +L  G++ HA  
Sbjct: 564 SWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYA 623

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K     + F A SL+DMYAK G +  +  VF+G++EK+   WN MI G+  H  + E +
Sbjct: 624 LKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAI 683

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE+MQ+ G +P++ T++ VL+AC+H G++ +G  Y D M     + PN+ HY+C+ID+
Sbjct: 684 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDM 743

Query: 383 LGRAGLIHEAYDLIL-NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG + +A  ++   M  +A   +W SLL+SCR ++NLE+ E  A +LF +EP+   N
Sbjct: 744 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPEN 803

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEI 493
           ++LLSN+YA   +WE+V + R+ + +  ++K+   SW+E+         G+R      EI
Sbjct: 804 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 863

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
            S    L  ++ K+GY+P+T    HD+ +  K E L  HSEKLALT+GL+    G  IR+
Sbjct: 864 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 923

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLRIC DCH+  K  S++  RE +VRD  RFHHF NG CSC D+W
Sbjct: 924 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 159/337 (47%), Gaps = 15/337 (4%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIG-MGLNNDTLTSNILINFYSKCG 82
           +S++A       L   LQ+  + +    G+  H  + G   L ND +    +I  Y+ CG
Sbjct: 75  SSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCG 134

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
               +R VFD +  + +  WN +I SY+ N    E +  FI M+         FT   V+
Sbjct: 135 SPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVI 194

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            ACA   DV     +H   +K  +  +VFVG AL+  Y   G ++DA ++F+ MPERN V
Sbjct: 195 KACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLV 254

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ--------FTISSVICACAGLAALIQ 254
           +W+SM+  F  N   EE+ +L        +E N          T+ +V+  CA    +  
Sbjct: 255 SWNSMIRVFSDNGFSEESFLLLGEM----MEENGDGAFMPDVATLVTVLPVCAREREIGL 310

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           GK VH    K      +   ++L+DMY+KCGC+ +A  +F     KNVV WNTM+ GFS 
Sbjct: 311 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 370

Query: 315 HARSVEVMILFEKMQQAG--LHPNEQTYISVLSACSH 349
              +     +  +M   G  +  +E T ++ +  C H
Sbjct: 371 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 343/587 (58%), Gaps = 11/587 (1%)

Query: 23  SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
           +   +  A E++ L A +  C  E      K  H   +      + L +N  +  Y+KCG
Sbjct: 136 AGGEDVKADEVTILNA-VPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG 194

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
            +S A++VF  +  + + SWN +IG +  +   + ++   + M   G  P S FTV S+L
Sbjct: 195 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDS-FTVCSLL 253

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            AC+  + +   K++H F ++  ++R++FV  ++L +Y  CG +     +F++M +++ V
Sbjct: 254 SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLV 313

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W++++ G++QN   + AL +FR+  + G++    ++  V  AC+ L +L  G++ HA  
Sbjct: 314 SWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYA 373

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K     + F A SL+DMYAK G +  +  VF+G++EK+   WN MI G+  H  + E +
Sbjct: 374 LKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAI 433

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE+MQ+ G +P++ T++ VL+AC+H G++ +G  Y D M     + PN+ HY+C+ID+
Sbjct: 434 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDM 493

Query: 383 LGRAGLIHEAYDLIL-NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG + +A  ++   M  +A   +W SLL+SCR ++NLE+ E  A +LF +EP+   N
Sbjct: 494 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPEN 553

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEI 493
           ++LLSN+YA   +WE+V + R+ + +  ++K+   SW+E+         G+R      EI
Sbjct: 554 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 613

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
            S    L  ++ K+GY+P+T    HD+ +  K E L  HSEKLALT+GL+    G  IR+
Sbjct: 614 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 673

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLRIC DCH+  K  S++  RE +VRD  RFHHF NG CSC D+W
Sbjct: 674 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 206/413 (49%), Gaps = 11/413 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++TL   L  CARER    GK  H   + + L+ + + +N L++ YSKCG I+ A+ +F
Sbjct: 41  DVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 100

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACAAKRD 150
                + +VSWNT++G ++  G       +   ML  G+     E T+ + +  C  +  
Sbjct: 101 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESF 160

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K+LH ++LK     N  V  A +  YAKCG +S A RVF  +  +   +W++++ G
Sbjct: 161 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 220

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
             Q+     +L    + ++ GL  + FT+ S++ AC+ L +L  GK+VH  + +     +
Sbjct: 221 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 280

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F   S++ +Y  CG +     +F  +E+K++V WNT+I+G+ ++      + +F +M  
Sbjct: 281 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 340

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
            G+     + + V  ACS +  +  G+      +K H +  + F    +ID+  + G I 
Sbjct: 341 YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-HLLEDDAFIACSLIDMYAKNGSIT 399

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-----QLFGMEPDN 438
           ++  +   +   +TAS W +++     Y    LA+ A K     Q  G  PD+
Sbjct: 400 QSSKVFNGLKEKSTAS-WNAMIMG---YGIHGLAKEAIKLFEEMQRTGHNPDD 448



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 145/278 (52%), Gaps = 11/278 (3%)

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLRE---GKTPYSEFTVSSVLCACAAKRDVFE 153
           R  VSWN++I  ++ NG  +E+  L   M+ E   G       T+ +VL  CA +R++  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H +A+K  +D+ + +  AL+D+Y+KCG I++A  +F+    +N V+W++MV GF  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 214 NELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
                    + R+    G  ++ ++ TI + +  C   + L   K++H    K  F  N 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE---KM 328
             A++ V  YAKCG +  A  VF GI  K V  WN +I G   HA+S +  +  +   +M
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG---HAQSNDPRLSLDAHLQM 237

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           + +GL P+  T  S+LSACS +  +  GK     +++ 
Sbjct: 238 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRN 275


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 327/543 (60%), Gaps = 15/543 (2%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + +T   ++  Y+K   +  AR+ FD MP+R +VSWN ++  Y  NG  +EA+ LF  M+
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
             G  P  E T  +V+ AC+++ D      L     +  +  N FV TALLD+YAK G +
Sbjct: 253 NAGIEP-DETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDL 311

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA-QVLGLEYNQFTISSVICA 245
             A ++F +MP RN VTW+SM+AG+ QN     A+ LF+       L  ++ T+ SVI A
Sbjct: 312 DSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 371

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C  L AL  G  V   L +     ++   ++++ MY++CG + DA  VF  +  ++VV +
Sbjct: 372 CGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSY 431

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           NT+ISGF+ H   VE + L   M++ G+ P+  T+I VL+ACSH G++E+G+  F+ +  
Sbjct: 432 NTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD 491

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
                P + HY+CM+D+LGR G + +A   +  MP +  A ++GSLL + R ++ +EL E
Sbjct: 492 -----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGE 546

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK- 484
           +AA +LF +EPDN+GN +LLSNIYA+  RW++V R R+ ++   VKK    SWVE  GK 
Sbjct: 547 LAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKL 606

Query: 485 -------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
                  R+H R  +IY  L +L ++M++ GY  +    L DVE+  K+E++  HSEKLA
Sbjct: 607 HKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLA 666

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + + L+    G  IR++KNLR+C DCH+ +K  S++ GR  IVRD NRFH F +G CSC 
Sbjct: 667 ICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCK 726

Query: 598 DFW 600
           D+W
Sbjct: 727 DYW 729



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 174/340 (51%), Gaps = 44/340 (12%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNG 113
           HA ++ +G  +D    N +I+ Y++ G I  ARKVFDE+P  +R +  WN ++  Y    
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
            E +A  LF                           DV               +RNV   
Sbjct: 178 SEGQAQWLF---------------------------DVMP-------------ERNVITW 197

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           TA++  YAK   +  A R F+ MPER+ V+W++M++G+ QN L EEAL LF      G+E
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIE 257

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            ++ T  +VI AC+          +   L +     N F  ++L+DMYAK G +  A  +
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKL 317

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA-GLHPNEQTYISVLSACSHIGM 352
           F+ +  +NVV WN+MI+G++++ +S   + LF++M  A  L P+E T +SV+SAC H+G 
Sbjct: 318 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 377

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +E G ++    + ++ +  ++  ++ MI +  R G + +A
Sbjct: 378 LELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDA 416



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 113/229 (49%), Gaps = 19/229 (8%)

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +F S    N   ++SM+  +   + + + ++++ + Q  G+  + F +  ++   AG   
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAF-VYPILIKSAGTG- 113

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMI 309
              G   HA + K G GS+ F  ++++DMYA+ G +  A  VF  I   E+ V  WN M+
Sbjct: 114 ---GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           SG+ +     +   LF+ M +     N  T+ ++++  + +  +E  + YFD M ++   
Sbjct: 171 SGYWKWESEGQAQWLFDVMPER----NVITWTAMVTGYAKVKDLEAARRYFDCMPER--- 223

Query: 370 LPNVFHYSCMIDILGRAGLIHEA---YDLILNMPFDATASMWGSLLASC 415
             +V  ++ M+    + GL  EA   +D ++N   +   + W +++++C
Sbjct: 224 --SVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISAC 270


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 325/558 (58%), Gaps = 11/558 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H  ++      +    N  ++FYSK   ++  RK+F+EMP+   VS+N II +Y  
Sbjct: 260 GQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAW 319

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G+ +E++ LF   L+        F   ++L   A+  D+   +QLH   + +  D +  
Sbjct: 320 VGKVKESIDLF-QELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFR 378

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V  +L+D+YAKCG   +A R+F  +  R+ V W++M++  VQ  L+E  L LF   +   
Sbjct: 379 VSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRAN 438

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  +Q T + V+ A A LA+++ GKQ+H+ + ++GF  N+++  +L+DMYA C  + DA 
Sbjct: 439 VSADQATFACVLKASANLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAI 497

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
             F  + E+NVV WN ++S ++++      +  FE+M  +G  P+  +++ +L+ACSH  
Sbjct: 498 KTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCR 557

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           +VE+G  YF+ M   +N+ P   HY+ M+D L R+G   EA  L+  MPF+    +W S+
Sbjct: 558 LVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSV 617

Query: 412 LASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           L SCR ++N  LA  AA QLF M+   +A  ++ +SNI+A   +W+ V + +K +RD  V
Sbjct: 618 LNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGV 677

Query: 471 KKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           +K  + SWVEIK K          HP+  EI  K+E L E+M+K GY P+      +V+ 
Sbjct: 678 RKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDK 737

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K + L +HSE+LA+ F L+    G PI +MKNLR C DCH+ +K  S+I GRE  VRD
Sbjct: 738 ESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRD 797

Query: 583 LNRFHHFTNGSCSCWDFW 600
            NRFHHF +GSCSC D+W
Sbjct: 798 SNRFHHFRDGSCSCGDYW 815



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 182/359 (50%), Gaps = 4/359 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+I+ +G + +    N L++ Y K G +  AR++F EM     VS+N +I  Y  NG  
Sbjct: 163 HAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLN 222

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ LF+ M   G  P S+FT ++V+ A     D    +Q+H F +K +  RNVFVG A
Sbjct: 223 EEAIELFVEMQNLGFKP-SDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNA 281

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
            LD Y+K   +++  ++F  MPE + V+++ ++  +      +E++ LF+  Q    +  
Sbjct: 282 FLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRK 341

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            F   +++   A    L  G+Q+HA +  +    +   ++SLVDMYAKCG   +A  +F 
Sbjct: 342 NFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFL 401

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  ++ V W  MIS   +       + LF +M++A +  ++ T+  VL A +++  +  
Sbjct: 402 RLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILL 461

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           GK     +++      NV+    ++D+      I +A      M  +     W +LL++
Sbjct: 462 GKQLHSCVIRSG--FMNVYSGCALLDMYANCASIKDAIKTFEEMS-ERNVVTWNALLSA 517



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 190/366 (51%), Gaps = 6/366 (1%)

Query: 51  RGKVCHAK-IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           RG++C A+ ++    N ++ + +I+I+ Y K G ++ AR++FD+  +R +V+W T+IG+Y
Sbjct: 56  RGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAY 115

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           + + R  +A  LF  M R G  P    T  ++L  C       E  Q H   +K     N
Sbjct: 116 SKSNRFGDAFKLFAEMHRSGSQP-DYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLN 174

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
             V   LLD Y K G +  A R+F  M   + V+++ M+ G+  N L EEA+ LF   Q 
Sbjct: 175 HRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQN 234

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           LG + + FT ++VI A  GL     G+Q+H  + KT F  N+F  ++ +D Y+K  CV +
Sbjct: 235 LGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNE 294

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS-ACS 348
              +F+ + E + V +N +I+ ++   +  E + LF+++Q          + ++LS A S
Sbjct: 295 VRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAAS 354

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
            + +    + +  ++V   +  P+    + ++D+  + G   EA  + L +   +T   W
Sbjct: 355 SLDLQMGRQLHAQVVVSMAD--PDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVP-W 411

Query: 409 GSLLAS 414
            +++++
Sbjct: 412 TAMISA 417


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 335/580 (57%), Gaps = 40/580 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL +++ SCA  +    G+  H + + +G++ +   SN L+  Y++ G ++  RK+F  M
Sbjct: 417 TLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSM 476

Query: 95  PQRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P+   VSWN+IIG+  ++ R   EAVA F+N LR G+   +  T SSVL A ++      
Sbjct: 477 PEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQ-KLNRITFSSVLSAVSSLSFGEL 535

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFV 212
            KQ+H  ALK  +        AL+  Y KCG +    ++F  M ER ++VTW+SM++G++
Sbjct: 536 GKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYI 595

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            NEL  +AL L       G   + F  ++V+ A A +A L +G +VHA   +    S++ 
Sbjct: 596 HNELLAKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 655

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             S+LVDMY+KCG +  A   F+                          M LF  M+  G
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFN-------------------------TMPLFANMKLDG 690

Query: 333 LHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
             P +  T++ VLSACSH G++E+G  +F+ M   + + P + H+SCM D+LGRAG + +
Sbjct: 691 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDK 750

Query: 392 AYDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
             D I  MP      +W ++L +C   N R  EL + AA+ LF +EP+NA N++LL N+Y
Sbjct: 751 LEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 810

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
           AA  RWE++ +ARK ++D++VKKE   SWV +K        G ++HP    IY KL++L 
Sbjct: 811 AAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELN 870

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL-CPGVPIRIMKNLRIC 560
            +M+  GY P+T   L+D+E   K+E+L +HSEKLA+ F L       +PIRIMKNLR+C
Sbjct: 871 RKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVC 930

Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GDCHS  K  S+I GR+ I+RD NRFHHF +G CSC DFW
Sbjct: 931 GDCHSAFKHISKIEGRQIILRDSNRFHHFQDGECSCSDFW 970



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 166/356 (46%), Gaps = 27/356 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           +QSC   R     K+ H+++   GL  D    N LIN Y + G    ARKVFDEMP R  
Sbjct: 10  VQSCIGHRGA--AKLFHSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNC 67

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV--FECKQL 157
           VSW  ++  Y+ NG  +EA+    +M++EG    + +   S L AC     V     +Q+
Sbjct: 68  VSWACVVSGYSRNGEHKEALVFLRDMVKEGVFS-NHYAFVSALRACQELDSVGILFGRQI 126

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           H    K +   +  V   L+ +Y KC G +  A R F+ +  +N V+W+S+++ + Q   
Sbjct: 127 HGLLFKLSYAVDAVVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTGD 186

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAA----LIQGKQVHAVLCKTGFGSNMF 272
              A  +F   Q  G    ++T  S++     L      L++  Q+   + K+GF +++F
Sbjct: 187 QRFAFKMFYSMQCDGSRPTEYTFGSLVTTACSLTEPDVRLLE--QIMCTIQKSGFLTDLF 244

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             S LV  +AK G ++ A  +F+ +E +N V  N ++ G  R     E   LF  M    
Sbjct: 245 VGSGLVSAFAKSGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM- 303

Query: 333 LHPNEQTYISVLSACSHIGMVE-----KGK---------SYFDLMVKQHNVLPNVF 374
           +  + ++Y+ +LS+     + E     KG+            D MV   N L N++
Sbjct: 304 IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMY 359



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 177/359 (49%), Gaps = 12/359 (3%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G   D    + L++ ++K G +  ARK+F++M  R  V+ N ++         +EA  LF
Sbjct: 238 GFLTDLFVGSGLVSAFAKSGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLF 297

Query: 123 INM---LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM-DRNVFVGTALLD 178
           ++M   +      Y     S    + A +  + + +++H   +   + D  V +G  L++
Sbjct: 298 MDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVN 357

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF---RRAQVLGLEYN 235
           +YAKCG I+DA RVF  M E++ V+W+SM+ G  QN  + EA+  +   RR ++L     
Sbjct: 358 MYAKCGSIADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILP---G 414

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            FT+ S I +CA L     G+Q+H    K G   N+  +++L+ +YA+ GC+ +   +FS
Sbjct: 415 SFTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFS 474

Query: 296 GIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
            + E + V WN++I   +   RS+ E +  F    +AG   N  T+ SVLSA S +   E
Sbjct: 475 SMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGE 534

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            GK    L +K +N+       + +I   G+ G +     +   M        W S+++
Sbjct: 535 LGKQIHGLALK-YNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMIS 592


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 349/583 (59%), Gaps = 20/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   + +C      ++   C A  +  G ++ +  +N  + +YSK GL+  A  VF  M
Sbjct: 142 TLSGLIAACCDRVDLIKQLHCFA--VSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              R  VSWN++I +Y  +    +A+AL+  M+ +G      FT++SVL A  +   +  
Sbjct: 200 DGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKG-FKIDMFTLASVLNALTSLDHLIG 258

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGL---ISDASRVFESMPERNEVTWSSMVAG 210
            +Q H   +KA   +N  VG+ L+D Y+KCG    +SD+ +VF+ +   + V W++M++G
Sbjct: 259 GRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISG 318

Query: 211 FVQNELY-EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           +  NE + EEA+  FR+ Q +G   +  +   V  AC+ L++  QGKQ+H +  K+   S
Sbjct: 319 YSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPS 378

Query: 270 NMFAAS-SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
           N  + + +L+ +Y K G ++DA  VF  + E N V +N MI G+++H    E + L+++M
Sbjct: 379 NRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRM 438

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
             +G+ PN  T++++LSAC+H G V++G+ YF+ M +   + P   HYSCMID+LGRAG 
Sbjct: 439 LDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGK 498

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
           + EA   I  MP+   +  W +LL +CR ++N+ LAE AAK+L  M+P  A  +++L+N+
Sbjct: 499 LEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANM 558

Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKL 500
           YA   +WEE+A  RK +R   ++K+   SW+E+K K++        HP I E+   LE++
Sbjct: 559 YADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEM 618

Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQEL---LIHHSEKLALTFGLMCLCPGVPIRIMKNL 557
           +++MKK+GY  + +  +   +++ + E    L HHSEKLA+ FGLM    G  I ++KNL
Sbjct: 619 MKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNL 678

Query: 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           RICGDCH+ +KF S +AGRE IVRD  RFH F +G CSC D+W
Sbjct: 679 RICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/410 (31%), Positives = 198/410 (48%), Gaps = 39/410 (9%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           N    +  + +  L     ER    GK  HA  +   + + T  SN  +N YSKCG +S 
Sbjct: 2   NQTQWKFKSFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSY 61

Query: 87  -------------------------------ARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
                                          AR++FDE PQ   VS+NT+I  Y  + RE
Sbjct: 62  ARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGY-ADARE 120

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             A  +    +RE       FT+S ++ AC  + D+   KQLH FA+    D    V  A
Sbjct: 121 TVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVNNA 178

Query: 176 LLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
            +  Y+K GL+ +A  VF  M   R+EV+W+SM+  + Q++   +AL L++     G + 
Sbjct: 179 FVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKI 238

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG---CVVDAY 291
           + FT++SV+ A   L  LI G+Q H  L K GF  N    S L+D Y+KCG    + D+ 
Sbjct: 239 DMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSE 298

Query: 292 FVFSGIEEKNVVLWNTMISGFS-RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            VF  I   ++VLWNTMISG+S     S E +  F +MQ+ G  P++ +++ V SACS++
Sbjct: 299 KVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNL 358

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
               +GK    L +K +     +   + +I +  ++G + +A  +   MP
Sbjct: 359 SSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/605 (33%), Positives = 340/605 (56%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   + +CA+ +    GK     +  +G+ ++TL  N L++ Y KCG +   R++FDE 
Sbjct: 225 TMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEF 284

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V +NTI+ +Y  +G   E + +   ML++G+ P  + T+ S + ACA   D+   
Sbjct: 285 SDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRP-DKVTMLSTIAACAQLGDLSVG 343

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCG--------------------------LISD 188
           K  H +  +  ++R   +  A++D+Y KCG                          L+ D
Sbjct: 344 KSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRD 403

Query: 189 -----ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
                A R+F  MPE N V+W++M+   VQ  ++EEA+ L R  Q  G++ ++ T+  + 
Sbjct: 404 GELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIA 463

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC  L AL   K ++  + K     +M   ++LVDM+++CG  ++A  VF  +E+++V 
Sbjct: 464 SACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVS 523

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W   I   +    +   + LF++M +  +  ++  ++++L+A SH G V++G+  F  M
Sbjct: 524 AWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAM 583

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
            K H V P + HY CM+D+LGRAGL+ EA+DL+ +MP      +WGS LA+CR ++N+E 
Sbjct: 584 EKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEF 643

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI-- 481
           A  A +++  + P+  G H+LLSNIYA+  +W +VAR R  +++   +K    S +E+  
Sbjct: 644 ANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHG 703

Query: 482 ------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                  G  +H   A+I   L+++   + ++GY P+T + L DV++  K+ LL  HSEK
Sbjct: 704 LIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEK 763

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ +GL+    G+PIR++KNLR+C DCHSF K  S++ GRE  VRD NR+H F  G CS
Sbjct: 764 LAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCS 823

Query: 596 CWDFW 600
           C DFW
Sbjct: 824 CRDFW 828



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 190/396 (47%), Gaps = 33/396 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C++  A   G   H  ++ MGL  D   +N LI+FY+ CG +   RKVFDEM
Sbjct: 124 TFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEM 183

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW ++I  Y+     +EAV LF  M+  G  P +  T+   + ACA  +D+   
Sbjct: 184 LERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEP-NPVTMVCAISACAKLKDLELG 242

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++     +  +  N  V  ALLD+Y KCG +     +F+   ++N V ++++++ +VQ+
Sbjct: 243 KKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQH 302

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  E L++       G   ++ T+ S I ACA L  L  GK  HA + + G       +
Sbjct: 303 GLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNIS 362

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR----------------- 317
           ++++DMY KCG    A  VF  +  K VV WN++I+G  R                    
Sbjct: 363 NAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLV 422

Query: 318 SVEVMI--------------LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           S   MI              L  +MQ  G+  +  T + + SAC ++G ++  K  +   
Sbjct: 423 SWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTY- 481

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++++++  ++   + ++D+  R G    A  +  NM
Sbjct: 482 IEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENM 517



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 8/348 (2%)

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           DE  +  + + NT+I  Y  +G  +EA+ ++++M+         FT   +L AC+     
Sbjct: 79  DEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAF 138

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            E  Q+H   +K  + +++FV  +L+  YA CG +    +VF+ M ERN V+W+S++ G+
Sbjct: 139 SEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGY 198

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
               + +EA+ LF     +G+E N  T+   I ACA L  L  GK+V  ++ + G  SN 
Sbjct: 199 SVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNT 258

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++L+DMY KCG +     +F    +KN+V++NT++S + +H  + EV+++ ++M Q 
Sbjct: 259 LVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQK 318

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAGLIH 390
           G  P++ T +S ++AC+ +G +  GKS    + +  N L  + + S  +ID+  + G   
Sbjct: 319 GQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFR--NGLERLDNISNAIIDMYMKCGKRE 376

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
            A  +  +M  + T   W SL+A       LEL    A ++FG  P++
Sbjct: 377 AACKVFDSMS-NKTVVTWNSLIAGLVRDGELEL----ALRIFGEMPES 419


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 322/574 (56%), Gaps = 49/574 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++C+  +A   G+  H  ++  G+ +D    +  I+ Y+  G +  ARK+F   
Sbjct: 134 TYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS- 192

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WNT+I  Y   G  + A  LF  M      P                      
Sbjct: 193 GESDVVCWNTMIDGYLKCGVLEAAKGLFAQM------PV--------------------- 225

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                        +N+     +++  AK G + DA ++F+ M ER+E++WSSMV G++  
Sbjct: 226 -------------KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISA 272

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             Y+EAL +F++ Q       +F +SSV+ AC+ + A+ QG+ VHA L +     +    
Sbjct: 273 GRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLG 332

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG +   + VF  ++E+ +  WN MI G + H R+ + + LF K+Q+  + 
Sbjct: 333 TALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMK 392

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T + VL+AC+H G V+KG   F  M + + V P + HY CM+D+LGR+GL  EA D
Sbjct: 393 PNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAED 452

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI +MP    A++WG+LL +CR + N +LAE   K L  +EP N+G ++LLSNIYA   R
Sbjct: 453 LINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGR 512

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           +++V++ RKL++D  +K     S V++         G  +HP++ EIY KL+ + E ++ 
Sbjct: 513 FDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQM 572

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P+T   L D+++  K+  + +HSEKLA+ FGL+   PG  I I+KNLR+C DCHS 
Sbjct: 573 AGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSA 632

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S+I  RE IVRD  R+HHF NG+CSC DFW
Sbjct: 633 TKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 18/268 (6%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFVQ 213
           QLH   L++   ++ +V  ALL  YA         A +VF S+P  N   W+ ++ G ++
Sbjct: 51  QLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    +A+  + R  V+    N+FT  ++  AC+   A+ +G+Q+H  + K G GS++  
Sbjct: 111 NNKLFKAIYFYGR-MVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 274 ASSLVDMYAKCGCVVDAYFVF-SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            S+ + MYA  G + DA  +F SG  E +VV WNTMI G+ +         LF +M    
Sbjct: 170 KSAGIHMYASFGRLEDARKMFYSG--ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVK- 226

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              N  ++  +++  +  G +   +  FD M ++  +      +S M+D    AG   EA
Sbjct: 227 ---NIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI-----SWSSMVDGYISAGRYKEA 278

Query: 393 YDLILNMPFDATAS---MWGSLLASCRN 417
            ++   M  + T     +  S+LA+C N
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSN 306


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/583 (34%), Positives = 348/583 (59%), Gaps = 22/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +C+  ++   GK  HA +I   ++ DT   N L +FYSK   +  A K F  +
Sbjct: 167 TLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKII 226

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ ++SW ++I S   NG+   +++ F++ML +G  P +E+T++SVL AC     +   
Sbjct: 227 KEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKP-NEYTLTSVLSACCVMLTLDLG 285

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H  ++K     ++ +  +++ +Y KCG + +A ++FE M   N VTW++M+AG  + 
Sbjct: 286 AQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKM 345

Query: 215 -ELYEE----------ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
            +L E+          AL +F++    G++ + FT SSV+  C+ L AL QG+Q+H  + 
Sbjct: 346 MDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 405

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           K+G  +++   ++LV MY KCG +  A   F  +  + ++ W +MI+GF+RH  S + + 
Sbjct: 406 KSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQ 465

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LFE M+  G+ PN+ T++ VLSACSH G+ ++   YF+LM KQ+N+ P + H++C+ID+ 
Sbjct: 466 LFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMY 525

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + EA+D++  M F+   ++W  L+A CR++   +L   AA+QL  ++P +   ++
Sbjct: 526 LRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYV 585

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
            L N++ +  RW++V++ RKL+++ +V K K  SW+ IK K        ++H +  E+Y 
Sbjct: 586 SLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYK 645

Query: 496 KLEKLVEEMKKLGYKP--ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
            LE ++ E+K LGY+P  + E    +  + R     + HSEKLA+ FGL+ L    PIR+
Sbjct: 646 LLETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRV 705

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           +K++ +C DCH+F++F S + GRE ++RD  + H F NG CSC
Sbjct: 706 VKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSC 748



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 220/414 (53%), Gaps = 20/414 (4%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ C         ++ H  I+  G + D      L+N YSKCG++  A KVFD +P+R +
Sbjct: 71  LQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNV 130

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            +W T++  Y  N     A+ LFI ML  G  P S +T+  VL AC++ + +   KQ+H 
Sbjct: 131 NAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYP-SNYTLGIVLNACSSLQSIEFGKQVHA 189

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           + +K  +D +  +G +L   Y+K   +  A + F+ + E++ ++W+S+++    N     
Sbjct: 190 YLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAAR 249

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           +L  F      G++ N++T++SV+ AC  +  L  G Q+H++  K G+GS++   +S++ 
Sbjct: 250 SLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMY 309

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR-----------HARSVEVMILFEKM 328
           +Y KCG +++A  +F G+E  N+V WN MI+G ++           H      + +F+K+
Sbjct: 310 LYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKL 369

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
            ++G+ P+  T+ SVLS CS++  +E+G+     ++K   VL +V   + ++ +  + G 
Sbjct: 370 YRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKS-GVLADVVVGTALVSMYNKCGS 428

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNY----RNLELAEIAAKQLFGMEPDN 438
           I +A    L MP   T   W S++     +    + L+L E    +L G++P+ 
Sbjct: 429 IDKASKAFLEMP-SRTMISWTSMITGFARHGLSQQALQLFE--DMRLVGIKPNQ 479



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 119/225 (52%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L  C  +    E + +H   +K     ++FV T L++VY+KCG++  A +VF+++P RN
Sbjct: 70  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRN 129

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
              W++++ G+VQN     AL LF +    G   + +T+  V+ AC+ L ++  GKQVHA
Sbjct: 130 VNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHA 189

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
            L K     +    +SL   Y+K   +  A   F  I+EK+V+ W ++IS    + ++  
Sbjct: 190 YLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAAR 249

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
            +  F  M   G+ PNE T  SVLSAC  +  ++ G     L +K
Sbjct: 250 SLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK 294



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T  + L  C+   A  +G+  H +II  G+  D +    L++ Y+KCG I  A K F
Sbjct: 377 DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAF 436

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC--AAKR 149
            EMP R ++SW ++I  +  +G  Q+A+ LF +M   G  P ++ T   VL AC  A   
Sbjct: 437 LEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKP-NQVTFVGVLSACSHAGLA 495

Query: 150 D----VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTW 204
           D     FE  Q   + +K  MD        L+D+Y + G + +A  V   M  E NE  W
Sbjct: 496 DEALYYFELMQKQ-YNIKPVMDH----FACLIDMYLRLGRVEEAFDVVHKMNFEPNETIW 550

Query: 205 SSMVAG 210
           S ++AG
Sbjct: 551 SMLIAG 556


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 318/533 (59%), Gaps = 9/533 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C   R    G+  H+  +  G  +D   S +LI+ YSK G +  AR+V + +
Sbjct: 347 TYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ +VSW ++I  Y  +   ++A+A F  M + G  P     ++S +  CA    + + 
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP-DNIGLASAISGCAGINAMRQG 465

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H     +    +V +  AL+++YA+CG I +A   FE M  ++ +T + +V+GF Q+
Sbjct: 466 LQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQS 525

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L+EEAL +F R    G+++N FT  S + A A LA + QGKQ+HA + KTG        
Sbjct: 526 GLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG 585

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+ +Y KCG   DA   FS + E+N V WNT+I+  S+H R +E + LF++M++ G+ 
Sbjct: 586 NALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIK 645

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T+I VL+ACSH+G+VE+G SYF  M  ++ + P   HY+C+IDI GRAG +  A  
Sbjct: 646 PNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKK 705

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP  A A +W +LL++C+ ++N+E+ E AAK L  +EP ++ +++LLSN YA   +
Sbjct: 706 FIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEK 765

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W    + RK++RD  V+KE  +SW+E+K        G R HP   +IY+ L  + + + K
Sbjct: 766 WANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAK 825

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           +GYK E  H  HD E   +    + HSEKLA+TFGLM L P +P+R++KNLR+
Sbjct: 826 VGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 203/391 (51%), Gaps = 13/391 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HAK +  GL    +  N+LI+ YSK GL+  AR+VF+E+  R  VSW  ++  Y  NG  
Sbjct: 65  HAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLG 124

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EA+ L+  M R G  P + + +SSVL +C       + + +H    K      +FVG A
Sbjct: 125 EEALGLYRQMHRAGVVP-TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           ++ +Y +CG    A RVF  MP R+ VT++++++G  Q    E AL +F   Q  GL  +
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             TISS++ ACA L  L +G Q+H+ L K G  S+     SL+D+Y KCG V  A  +F+
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
             +  NVVLWN M+  F +     +   LF +MQ AG+ PN+ TY  +L  C+    ++ 
Sbjct: 304 SSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDL 363

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS- 414
           G+    L VK      +++    +ID+  + G + +A   +L M  +     W S++A  
Sbjct: 364 GEQIHSLSVKT-GFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAGY 421

Query: 415 -----CRNYRNLELAEIAAKQLFGMEPDNAG 440
                C++     LA     Q  G+ PDN G
Sbjct: 422 VQHECCKD----ALAAFKEMQKCGIWPDNIG 448



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 193/359 (53%), Gaps = 4/359 (1%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + L SC +     +G++ HA+    G  ++    N +I  Y +CG    A +VF +MP
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP 205

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            R  V++NT+I  +   G  + A+ +F  M   G +P    T+SS+L ACA+  D+ +  
Sbjct: 206 HRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC-VTISSLLAACASLGDLQKGT 264

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           QLH +  KA +  +  +  +LLD+Y KCG +  A  +F S    N V W+ M+  F Q  
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
              ++  LF + Q  G+  NQFT   ++  C     +  G+Q+H++  KTGF S+M+ + 
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSG 384

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            L+DMY+K G +  A  V   ++EK+VV W +MI+G+ +H    + +  F++MQ+ G+ P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444

Query: 336 NEQTYISVLSACSHIGMVEKG-KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
           +     S +S C+ I  + +G + +  + V  ++   +V  ++ ++++  R G I EA+
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYS--GDVSIWNALVNLYARCGRIREAF 501



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 222/409 (54%), Gaps = 11/409 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA      +G   H+ +   G+++D +    L++ Y KCG +  A  +F+  
Sbjct: 246 TISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WN ++ ++       ++  LF  M   G  P ++FT   +L  C   R++   
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRP-NQFTYPCILRTCTCTREIDLG 364

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+H  ++K   + +++V   L+D+Y+K G +  A RV E + E++ V+W+SM+AG+VQ+
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  ++AL  F+  Q  G+  +   ++S I  CAG+ A+ QG Q+HA +  +G+  ++   
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIW 484

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LV++YA+CG + +A+  F  +E K+ +  N ++SGF++     E + +F +M Q+G+ 
Sbjct: 485 NALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVK 544

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSCMIDILGRAGLIHEAY 393
            N  T++S LSA +++  +++GK     ++K  H+    V +   +I + G+ G   +A 
Sbjct: 545 HNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN--ALISLYGKCGSFEDAK 602

Query: 394 DLILNMPFDATASMWGSLLASC----RNYRNLELAEIAAKQLFGMEPDN 438
                M      S W +++ SC    R    L+L +   K+  G++P++
Sbjct: 603 MEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQMKKE--GIKPND 648



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 163/324 (50%), Gaps = 8/324 (2%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE--GKTPYSEFTVSSVLCACAAKRDV 151
           M +R   S    +  +  +    + ++LF +  R+  G  P      +  L AC      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGP---LDFACALRACRGNGRR 57

Query: 152 FEC-KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           ++   ++H  A+   + +   VG  L+D+Y+K GL+  A RVFE +  R+ V+W +M++G
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + QN L EEAL L+R+    G+    + +SSV+ +C       QG+ +HA   K GF S 
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +F  ++++ +Y +CG    A  VF  +  ++ V +NT+ISG ++       + +FE+MQ 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           +GL P+  T  S+L+AC+ +G ++KG      + K   +  +      ++D+  + G + 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA-GISSDYIMEGSLLDLYVKCGDVE 296

Query: 391 EAYDLILNMPFDATASMWGSLLAS 414
            A  +I N        +W  +L +
Sbjct: 297 TAL-VIFNSSDRTNVVLWNLMLVA 319


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/612 (33%), Positives = 345/612 (56%), Gaps = 48/612 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + + +CA        K  H +++ MG  +D    N LI+ Y +   +  ARKVF+EM
Sbjct: 117 TFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM 176

Query: 95  PQRCIVSWNTIIGSYTTNGREQEA-------VALFINMLREGKTPYSEFTVSSVLCACAA 147
           P R +VSWN++I  Y  NG   EA       + LF+ M+ + K      T++S+L AC  
Sbjct: 177 PLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDL--LTITSILQACGH 234

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG----------------------- 184
             D+   K +H + + +  + +      L+++YAKCG                       
Sbjct: 235 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 294

Query: 185 --------LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
                    + D+ +VFE+M  R+ +TW++++A  V +E     L +  R +  G+  + 
Sbjct: 295 INVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDM 354

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
            T+ S++  C+ LAA  QGK++H  + K G  S++   + L++MY+KCG + +++ VF  
Sbjct: 355 ATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKL 414

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           ++ K+VV W  +IS    +    + +  F +M+ AG+ P+   +++++ ACSH G+VE+G
Sbjct: 415 MKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEG 474

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
            +YF  M K + + P + HY+C++D+L R+ L+ +A D IL+MP    +S+WG+LL++CR
Sbjct: 475 LNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACR 534

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
              + E+AE  ++++  + PD+ G ++L+SNIYAA  +W++V   RK I+   +KK+   
Sbjct: 535 MSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGC 594

Query: 477 SWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL 528
           SW+EI+        G +   +  E+   L  L   M K GY    +  LHD+++  K+++
Sbjct: 595 SWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDI 654

Query: 529 LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHH 588
           L  HSE+LA+ FGL+   PG P+++MKNLR+C DCH+  K+ S+I  RE +VRD NRFH 
Sbjct: 655 LCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHV 714

Query: 589 FTNGSCSCWDFW 600
           F +G+CSC D+W
Sbjct: 715 FKDGACSCGDYW 726



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 201/405 (49%), Gaps = 49/405 (12%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-EMPQRCIVSWNTIIGSYTTNGR 114
           H+ II +GL++  + S  LI  Y+     + +  VF    P   +  WN+II + T NG 
Sbjct: 36  HSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGL 95

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
             EA++L+    R    P   +T  SV+ ACA   D    K +H   L      ++++G 
Sbjct: 96  FSEALSLYSETQRIRLQP-DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           AL+D+Y +   +  A +VFE MP R+ V+W+S+++G+  N  + EAL ++ ++  L +E 
Sbjct: 155 ALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEM 214

Query: 235 -NQF-----TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
            NQF     TI+S++ AC  L  L  GK VH  +  +G+  +  A++ L++MYAKCG ++
Sbjct: 215 VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLL 274

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE---------------------- 326
            +  VFSG++ K+ V WN+MI+ + ++ +  + + +FE                      
Sbjct: 275 ASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSED 334

Query: 327 ---------KMQQAGLHPNEQTYISVLSACSHIGMVEKGKS----YFDLMVKQHNVLPNV 373
                    +M+  G+ P+  T +S+L  CS +    +GK      F L ++    + NV
Sbjct: 335 CNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNV 394

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
                +I++  + G +  ++ +   M      + W +L+++C  Y
Sbjct: 395 -----LIEMYSKCGSLRNSFQVFKLMKTKDVVT-WTALISACGMY 433



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 167/363 (46%), Gaps = 46/363 (12%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE-SMP 197
           SS+  A A+     +  +LH   +   +  +V     L+  YA     + +  VF  + P
Sbjct: 17  SSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASP 76

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
             N   W+S++     N L+ EAL L+   Q + L+ + +T  SVI ACAGL      K 
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           +H  +   GFGS+++  ++L+DMY +   +  A  VF  +  ++VV WN++ISG++ +  
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 318 SVEVM--------ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--- 366
             E +        +  E + Q    P+  T  S+L AC H+G +E GK   D M+     
Sbjct: 197 WNEALEIYYQSIKLFMEMVNQ--FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 254

Query: 367 -----HNVLPNVF----------------------HYSCMIDILGRAGLIHEAYDLILNM 399
                 N+L N++                       ++ MI++  + G + ++  +  NM
Sbjct: 255 CDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENM 314

Query: 400 PFDATASMWGSLLASCRNYR--NLELAEIAAKQLFGMEPDNAG--NHLLLSNIYAANRRW 455
                 + W +++ASC +    NL L  I+  +  G+ PD A   + L + ++ AA R+ 
Sbjct: 315 KARDIIT-WNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQG 373

Query: 456 EEV 458
           +E+
Sbjct: 374 KEI 376



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 41/272 (15%)

Query: 10  KFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTL 69
           + YY+S     +     N    +L T+ + LQ+C        GK  H  +I  G   DT 
Sbjct: 202 EIYYQSIK---LFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 258

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM---- 125
            SNILIN Y+KCG +  +++VF  M  +  VSWN++I  Y  NG+  +++ +F NM    
Sbjct: 259 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARD 318

Query: 126 --------------------LR-------EGKTPYSEFTVSSVLCAC---AAKRDVFECK 155
                               LR       EG TP    T+ S+L  C   AAKR   + K
Sbjct: 319 IITWNTIIASCVHSEDCNLGLRMISRMRTEGVTP-DMATMLSILPVCSLLAAKR---QGK 374

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           ++H    K  ++ +V VG  L+++Y+KCG + ++ +VF+ M  ++ VTW+++++      
Sbjct: 375 EIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYG 434

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACA 247
             ++A+  F   +  G+  +     ++I AC+
Sbjct: 435 EGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 466



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 3/181 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +++T+ + L  C+   A  +GK  H  I  +GL +D    N+LI  YSKCG +  + +VF
Sbjct: 353 DMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 412

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
             M  + +V+W  +I +    G  ++AV  F  M   G  P       +++ AC+    V
Sbjct: 413 KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVP-DHVAFVAIIFACSHSGLV 471

Query: 152 FE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVA 209
            E     H       ++  +     ++D+ ++  L+  A     SMP + + + W ++++
Sbjct: 472 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 531

Query: 210 G 210
            
Sbjct: 532 A 532


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 333/571 (58%), Gaps = 10/571 (1%)

Query: 34   STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            +TL + L +CAR      G+V H   +  GL  +T  +N L++ YS C       ++F  
Sbjct: 512  TTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRN 571

Query: 94   MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            M Q+ +VSW  +I SYT  G   +   L   M+ +G  P   F V+SVL   A    + +
Sbjct: 572  MAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKP-DVFAVTSVLHGFAGDESLKQ 630

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             K +H +A++  M++ + V  AL+++Y  C  + +A  VF+ +  ++ ++W++++ G+ +
Sbjct: 631  GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSR 690

Query: 214  NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
            N    E+  LF    +L  + N  T++ ++ A A +++L +G+++HA   + GF  + + 
Sbjct: 691  NNFANESFSLFSD-MLLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYT 749

Query: 274  ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +++LVDMY KCG ++ A  +F  + +KN++ W  MI+G+  H    + + LFE+M+ +G+
Sbjct: 750  SNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGV 809

Query: 334  HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
             P+  ++ ++L AC H G+  +G  +F+ M K++ + P + HY+C++D+L   G + EA+
Sbjct: 810  EPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAF 869

Query: 394  DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            + I +MP +  +S+W SLL  CR +R+++LAE  A ++F +EP+N G ++LL+NIYA   
Sbjct: 870  EFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAE 929

Query: 454  RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
            RWE V + +  I    +++    SW+E++GK        RNHP    I   L+ +   M+
Sbjct: 930  RWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMR 989

Query: 506  KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            + G+ P+ ++ L    D+   E L  HS KLA+TFG++ L  G PIR+ KN ++C  CH 
Sbjct: 990  EEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCHE 1049

Query: 566  FMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
              KF S++  RE I+RD +RFHHF  G CSC
Sbjct: 1050 AAKFISKMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 212/439 (48%), Gaps = 37/439 (8%)

Query: 38  ATLQSCARERAPVRGKVCHAKI-IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           A +Q C  ER+    +  HA +  G G    ++    L+  Y KCG + GAR VFDEMP 
Sbjct: 99  AVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPP 158

Query: 97  RC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           R   +  W +++ +Y   G  QE V+LF  M   G +P +   VS VL   A+   + E 
Sbjct: 159 RVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAH-AVSCVLKCIASLGSITEG 217

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H    K  +     V  AL+ +Y++CG + DA +VF+SM  R+ ++W+S ++G+  N
Sbjct: 218 EVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSN 277

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF------- 267
             ++ A+ LF +    G E +  T+ SV+ ACA L   + GK VH    K+G        
Sbjct: 278 GWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESV 337

Query: 268 --GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMIL 324
             G +    S LV MY KCG +  A  VF  +  K NV +WN ++ G+++ A   E ++L
Sbjct: 338 QSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLL 397

Query: 325 FEKMQQAGLHPNEQTYISVLS-----ACSHIGMVEKG---KSYFDLMVKQHNVLPNVFHY 376
           FE+M + G+ P+E     +L      +C+  G+V  G   K  F       N L + +  
Sbjct: 398 FEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAK 457

Query: 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC-RNYRNLELAEIAAKQ-LFGM 434
           S MID          A  +   MP   T S W S+++ C  N  N E  E+  +  + G 
Sbjct: 458 SNMID---------NAVLVFDRMPHQDTIS-WNSVISGCTSNGLNSEAIELFVRMWMQGH 507

Query: 435 EPDNAGNHLLLSNIYAANR 453
           E D+     LLS + A  R
Sbjct: 508 ELDST---TLLSVLPACAR 523



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 176/362 (48%), Gaps = 23/362 (6%)

Query: 28  ANATELS--TLQATLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNI-------LIN 76
           +  TE+S  T+ + L +CA     + GKV H   +  GL  + +++ S I       L+ 
Sbjct: 292 SEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVF 351

Query: 77  FYSKCGLISGARKVFDEMPQRCIVS-WNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
            Y KCG +  AR+VFD MP +  V  WN I+G Y      +E++ LF  M   G TP  E
Sbjct: 352 MYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITP-DE 410

Query: 136 FTVSSVL----CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
             +S +L    C   A+  +      H + +K        V  AL+  YAK  +I +A  
Sbjct: 411 HALSCLLKCITCLSCARDGLVA----HGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVL 466

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+ MP ++ ++W+S+++G   N L  EA+ LF R  + G E +  T+ SV+ ACA    
Sbjct: 467 VFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHY 526

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
              G+ VH    KTG       A++L+DMY+ C        +F  + +KNVV W  MI+ 
Sbjct: 527 WFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITS 586

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNV 369
           ++R     +V  L ++M   G+ P+     SVL   +    +++GKS     ++     +
Sbjct: 587 YTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKL 646

Query: 370 LP 371
           LP
Sbjct: 647 LP 648



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 162/318 (50%), Gaps = 10/318 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++  + + L   A + +  +GK  H   I  G+      +N L+  Y  C  +  AR VF
Sbjct: 611 DVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVF 670

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D +  + I+SWNT+IG Y+ N    E+ +LF +ML + K   +  T++ +L A A+   +
Sbjct: 671 DHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQFKP--NTVTMTCILPAVASISSL 728

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              +++H +AL+     + +   AL+D+Y KCG +  A  +F+ + ++N ++W+ M+AG+
Sbjct: 729 ERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGY 788

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSN 270
             +   ++A+ LF + +  G+E +  + S+++ AC       +G K  +A+  +      
Sbjct: 789 GMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPK 848

Query: 271 MFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +   + +VD+ +  G + +A+ F+ S   E +  +W +++ G   H R V+   L EK+ 
Sbjct: 849 LKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIH-RDVK---LAEKVA 904

Query: 330 QA--GLHPNEQTYISVLS 345
                L P    Y  +L+
Sbjct: 905 DRVFKLEPENTGYYVLLA 922


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/594 (37%), Positives = 336/594 (56%), Gaps = 18/594 (3%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           + S     NA  LST    L +C   R    G+  +  I    L  D+   + LI  Y +
Sbjct: 124 MCSQGVRPNAVTLST---ALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGR 180

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           C  I  A + FD  P++ +V W  +I +Y  N R   A+ L   M  EG       T  S
Sbjct: 181 CREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEG-IKLGLPTYVS 239

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPER 199
           +L ACA+  D+      H  A    +DR+   V   L+++Y KCG + DA RV ++MP R
Sbjct: 240 LLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVR 299

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
             V+W++M+A + QN    EA+ LF+   + G E +  T+ SV+ +CA L  L  GK++H
Sbjct: 300 TSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIH 359

Query: 260 A-VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS--GIEEKNVVLWNTMISGFSRHA 316
           A +     F  ++   ++++ MY KCG +  A  VF    +  ++VV W  MI  ++++ 
Sbjct: 360 ARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNG 419

Query: 317 RSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
              E + LF++M    G  PN  T++SVL ACSH+G +E+   +F  M     V P   H
Sbjct: 420 VGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDH 479

Query: 376 YSCMIDILGRAGLIHEAYDLIL-NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           Y C++D+LGRAG + EA  L+L +  F+A    W + L++C+   +LE ++ AAK++  +
Sbjct: 480 YCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSEL 539

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR--------N 486
           EP+N    +LLSN+YAA  R  +VAR R  ++ S VKK   +SW+EI  +         +
Sbjct: 540 EPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVS 599

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           HPR  EIYS+LE+L  E+K+ GY P+T+  L DV++ +K +LL +HSE+LA+  G++   
Sbjct: 600 HPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTP 659

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           PG  +R++KNLR+C DCH+  KF S+I GR+ IVRD +RFHHF +G CSC D+W
Sbjct: 660 PGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 194/387 (50%), Gaps = 6/387 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA+I    L+ +T   N+L++ YSK G + GA+  F  +      SWN ++ +Y  NG  
Sbjct: 55  HAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHP 114

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           + A  LF  M  +G  P +  T+S+ L AC A R++   ++L+      A++ +  V ++
Sbjct: 115 RGAATLFHWMCSQGVRP-NAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESS 173

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +Y +C  I +A R F+  PE++ V W++M++ +  N     AL L RR  + G++  
Sbjct: 174 LITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLG 233

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVF 294
             T  S++ ACA    L  G   H      G   S+   A +LV++Y KCG V DA  V 
Sbjct: 234 LPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVL 293

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             +  +  V W  MI+ ++++  + E + LF+ M   G  P++ T ISV+ +C+ +G + 
Sbjct: 294 DAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLS 353

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM-WGSLL- 412
            GK     +    +   ++   + +I + G+ G +  A ++   +P    + + W +++ 
Sbjct: 354 LGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIR 413

Query: 413 ASCRNYRNLELAEIAAKQLF--GMEPD 437
           A  +N    E  E+  + L   G EP+
Sbjct: 414 AYAQNGVGEEAIELFQEMLIDGGTEPN 440



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 4/276 (1%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           +S+L  C   R + E ++LH       +DRN F+G  L+D Y+K G +  A   F  +  
Sbjct: 39  ASLLWQC---RGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITL 95

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
            N  +W+ ++A + QN     A  LF      G+  N  T+S+ + AC     L  G+++
Sbjct: 96  HNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKL 155

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318
           + ++       +    SSL+ MY +C  + +A   F    EK+VV W  MIS ++ + R+
Sbjct: 156 NELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRT 215

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
              + L  +M   G+     TY+S+L AC+    +  G ++            +      
Sbjct: 216 SRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGT 275

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           ++++ G+ G + +A  ++  MP   + S W +++A+
Sbjct: 276 LVNLYGKCGRVDDARRVLDAMPVRTSVS-WTAMIAA 310


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/563 (37%), Positives = 330/563 (58%), Gaps = 15/563 (2%)

Query: 52  GKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+  H   +  GL  +D   ++ L++ Y  C     AR+ FDE+P    V    +     
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 111 TNGREQEAVALFINMLREGKTPY-SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
            N      +++F +M+  G      E      L A A   D      +H    K  +D  
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 170 VFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
             V   ++D YAK G   +  A ++F+ M +R+ V+W++M+A + QN L  EAL L+ + 
Sbjct: 227 TGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 228 QVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
            ++G +   N  T+S+V+ ACA   A+  GK++H  + + G   N++  +S+VDMY+KCG
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCG 345

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345
            V  A+  F  I+ KN++ W+ MI+G+  H    E + +F  M+++GL PN  T+I+VL+
Sbjct: 346 KVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLA 405

Query: 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           ACSH G++ +G+ +++ M  +  + P V HY CM+D+LGRAG + EAY LI  M     A
Sbjct: 406 ACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDA 465

Query: 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465
           ++WG+LL++CR Y+N+ELA+I A++LF ++  N+G ++LLSNIYA    W+EV R R L+
Sbjct: 466 ALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLV 525

Query: 466 RDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517
           +   ++K    S VE+KGK        ++HP+  EIY+ LEKL+E +   GY P T   L
Sbjct: 526 KTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVL 585

Query: 518 HDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRE 577
           HD++   ++ +L  HSEKLA+ F LM    G  I ++KNLR+C DCH+ +K  +++ GRE
Sbjct: 586 HDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGRE 645

Query: 578 TIVRDLNRFHHFTNGSCSCWDFW 600
            I+RDL RFHHF +G CSC D+W
Sbjct: 646 IIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 8/299 (2%)

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SW+T +    ++G +  A                   +   L A AA   +   +QLH+ 
Sbjct: 55  SWSTAVADLLSSG-DPVAALAVFAAALRANPAALRPALPPALRAAAAATSLSAGRQLHLL 113

Query: 161 ALKAAM-DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           AL++ +   + +  +ALL +Y  C    DA R F+ +P  N V  ++M +G ++N L   
Sbjct: 114 ALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYT 173

Query: 220 ALILFRRAQVLGLE--YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            L +FR     G     ++      + A A +        +HA++ K G       A+++
Sbjct: 174 TLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTI 233

Query: 278 VDMYAKCGC-VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG--LH 334
           +D YAK G   + A      + +++VV WNTMI+ ++++  S E + L+ KM   G  + 
Sbjct: 234 IDAYAKGGGHDLGAARKLFDMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVR 293

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            N  T  +VL AC+H G ++ GK   + +V+   +  NV+  + ++D+  + G +  A+
Sbjct: 294 CNAVTLSAVLLACAHAGAIQTGKRIHNQVVRM-GLEDNVYVGTSVVDMYSKCGKVEMAW 351


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/602 (35%), Positives = 338/602 (56%), Gaps = 42/602 (6%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG----------------- 82
           L+SCA+ +A + G+  H  ++ +G + D   +  LI+ Y++ G                 
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 83  -----LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
                LI+G         ARK+FDE+  + +VSWN +I  Y      +EA+ L+ +M++ 
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
              P  E T+ +V+ ACA    +   +QLH +        N+ +   L+D+Y+KCG +  
Sbjct: 192 NVKP-DESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  +F+ + +++ ++W++++ G     LY+EAL+LF+     G   N  T+ SV+ ACA 
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310

Query: 249 LAALIQGKQVHAVLCK--TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           L A+  G+ +H  + K   G  +     +SL+DMYAKCG +  A  VF  +  +++  WN
Sbjct: 311 LGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWN 370

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
            MI GF+ H ++     LF KM++ G+ P++ T++ +LSACSH GM++ G+  F  M + 
Sbjct: 371 AMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQD 430

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P + HY CMID+LG  GL  EA ++I  MP +    +W SLL +C+ + N+EL E 
Sbjct: 431 YKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGES 490

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
            A+ L  +EP+N G+++LLSNIYA   RW++VA+ R L+ D  +KK    S +EI     
Sbjct: 491 YAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVH 550

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
               G + HPR  EIY  LE++   M++ G+ P+T   L ++E+  K+  L HHSEKLA+
Sbjct: 551 EFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAI 610

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGL+   PG  + I+KNLR+C +CH   K  S+I  RE I RD  R H   +G  SC D
Sbjct: 611 AFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHD 670

Query: 599 FW 600
           +W
Sbjct: 671 YW 672



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 192/361 (53%), Gaps = 34/361 (9%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143
           +S A  +F+ + +  ++ WNT+   +  N     A+ L++ M+  G  P S ++   +L 
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNS-YSFPFLLK 73

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER---- 199
           +CA  + + E +Q+H   LK   D +++V T+L+ +YA+ G + DA +VF+    R    
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 200 ---------------------------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
                                      + V+W++M++G+V+   ++EAL L++      +
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV 193

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           + ++ T+ +V+ ACA   ++  G+Q+H+ +   GFGSN+   + L+D+Y+KCG V  A  
Sbjct: 194 KPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACG 253

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F G+ +K+V+ WNT+I G +      E ++LF++M ++G  PN+ T +SVL AC+H+G 
Sbjct: 254 LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 313

Query: 353 VEKGKSYFDLMVKQHNVLPNVFH-YSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           ++ G+     + K+   + N     + +ID+  + G I EA   + +     + S W ++
Sbjct: 314 IDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDI-EAAKQVFDSMLTRSLSSWNAM 372

Query: 412 L 412
           +
Sbjct: 373 I 373


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/583 (34%), Positives = 348/583 (59%), Gaps = 22/583 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +C+  ++   GK  HA +I   ++ DT   N L +FYSK   +  A K F  +
Sbjct: 161 TLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKII 220

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ ++SW ++I S   NG+   +++ F++ML +G  P +E+T++SVL AC     +   
Sbjct: 221 KEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKP-NEYTLTSVLSACCVMLTLDLG 279

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H  ++K     ++ +  +++ +Y KCG + +A ++FE M   N VTW++M+AG  + 
Sbjct: 280 AQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKM 339

Query: 215 -ELYEE----------ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
            +L E+          AL +F++    G++ + FT SSV+  C+ L AL QG+Q+H  + 
Sbjct: 340 MDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQII 399

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           K+G  +++   ++LV MY KCG +  A   F  +  + ++ W +MI+GF+RH  S + + 
Sbjct: 400 KSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQ 459

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           LFE M+  G+ PN+ T++ VLSACSH G+ ++   YF+LM KQ+N+ P + H++C+ID+ 
Sbjct: 460 LFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMY 519

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + EA+D++  M F+   ++W  L+A CR++   +L   AA+QL  ++P +   ++
Sbjct: 520 LRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYV 579

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
            L N++ +  RW++V++ RKL+++ +V K K  SW+ IK K        ++H +  E+Y 
Sbjct: 580 SLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYK 639

Query: 496 KLEKLVEEMKKLGYKP--ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
            LE ++ E+K LGY+P  + E    +  + R     + HSEKLA+ FGL+ L    PIR+
Sbjct: 640 LLETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRV 699

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           +K++ +C DCH+F++F S + GRE ++RD  + H F NG CSC
Sbjct: 700 VKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSC 742



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 220/415 (53%), Gaps = 20/415 (4%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ C         ++ H  I+  G + D      L+N YSKCG++  A KVFD +P+R +
Sbjct: 65  LQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNV 124

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            +W T++  Y  N     A+ LFI ML  G  P S +T+  VL AC++ + +   KQ+H 
Sbjct: 125 NAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYP-SNYTLGIVLNACSSLQSIEFGKQVHA 183

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           + +K  +D +  +G +L   Y+K   +  A + F+ + E++ ++W+S+++    N     
Sbjct: 184 YLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAAR 243

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           +L  F      G++ N++T++SV+ AC  +  L  G Q+H++  K G+GS++   +S++ 
Sbjct: 244 SLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMY 303

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR-----------HARSVEVMILFEKM 328
           +Y KCG +++A  +F G+E  N+V WN MI+G ++           H      + +F+K+
Sbjct: 304 LYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKL 363

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
            ++G+ P+  T+ SVLS CS++  +E+G+     ++K   VL +V   + ++ +  + G 
Sbjct: 364 YRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKS-GVLADVVVGTALVSMYNKCGS 422

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNY----RNLELAEIAAKQLFGMEPDNA 439
           I +A    L MP   T   W S++     +    + L+L E    +L G++P+  
Sbjct: 423 IDKASKAFLEMP-SRTMISWTSMITGFARHGLSQQALQLFE--DMRLVGIKPNQV 474



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 15/310 (4%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L  C  +    E + +H   +K     ++FV T L++VY+KCG++  A +VF+++P RN
Sbjct: 64  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRN 123

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
              W++++ G+VQN     AL LF +    G   + +T+  V+ AC+ L ++  GKQVHA
Sbjct: 124 VNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHA 183

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
            L K     +    +SL   Y+K   +  A   F  I+EK+V+ W ++IS    + ++  
Sbjct: 184 YLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAAR 243

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            +  F  M   G+ PNE T  SVLSAC  +  ++ G     L +K       +   S M 
Sbjct: 244 SLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMY 303

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA-----------K 429
             L + G + EA  L   M        W +++A      +L   ++AA           +
Sbjct: 304 LYL-KCGWLIEAQKLFEGME-TLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQ 361

Query: 430 QLF--GMEPD 437
           +L+  GM+PD
Sbjct: 362 KLYRSGMKPD 371



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T  + L  C+   A  +G+  H +II  G+  D +    L++ Y+KCG I  A K F
Sbjct: 371 DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAF 430

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC--AAKR 149
            EMP R ++SW ++I  +  +G  Q+A+ LF +M   G  P ++ T   VL AC  A   
Sbjct: 431 LEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKP-NQVTFVGVLSACSHAGLA 489

Query: 150 D----VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTW 204
           D     FE  Q   + +K  MD        L+D+Y + G + +A  V   M  E NE  W
Sbjct: 490 DEALYYFELMQKQ-YNIKPVMDHF----ACLIDMYLRLGRVEEAFDVVHKMNFEPNETIW 544

Query: 205 SSMVAG 210
           S ++AG
Sbjct: 545 SMLIAG 550


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/539 (36%), Positives = 325/539 (60%), Gaps = 13/539 (2%)

Query: 74  LINFYSKCGL---ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
           LINF ++      +S AR +FD M +  IV +N+I   Y+ +    E   LF+ +L +  
Sbjct: 68  LINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDL 127

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
            P   +T  S+L ACA  + + E +QLH  ++K  +D NV+V   L+++Y +C  +  A 
Sbjct: 128 LP-DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAAR 186

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
            VF+ + E   V +++M+ G+ +     EAL LFR  Q   L+ N+ T+ SV+ +CA L 
Sbjct: 187 CVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLG 246

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           +L  GK +H    K GF   +   ++L+DM+AKCG + DA  +F  +  K+   W+ MI 
Sbjct: 247 SLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIV 306

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
            ++ H ++   M++FE+M+   + P+E T++ +L+ACSH G+VE+G+ YF  MV +  ++
Sbjct: 307 AYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIV 366

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P++ HY  M+D+LGRAG + +AY+ I  +P   T  +W  LLA+C ++ NLELAE  +++
Sbjct: 367 PSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSER 426

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-------- 482
           +  ++  + G++++LSN+YA N++WE V   RK+++D +  K    S +E+         
Sbjct: 427 ILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFS 486

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DVEDSRKQELLIHHSEKLALTFG 541
           G        +++  L+++V+E+K  GY P+T   +H D+ D  K+  L +HSEKLA+ FG
Sbjct: 487 GDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFG 546

Query: 542 LMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           L+   PG  IR++KNLR+C DCHS  K  S I GR+ ++RD+ RFHHF +G CSC DFW
Sbjct: 547 LLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 151/283 (53%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++CA  +A   G+  H   + +G++++      LIN Y++C  +  AR VFD +
Sbjct: 133 TFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRI 192

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            + C+V +N +I  Y    R  EA++LF  M  +   P +E T+ SVL +CA    +   
Sbjct: 193 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKP-NEITLLSVLSSCALLGSLDLG 251

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H +A K    + V V TAL+D++AKCG + DA  +FE+M  ++   WS+M+  +  +
Sbjct: 252 KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANH 311

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSNMFA 273
              E ++++F R +   ++ ++ T   ++ AC+    + +G++  + ++ + G   ++  
Sbjct: 312 GQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKH 371

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
             S+VD+  + G + DAY F+         +LW  +++  S H
Sbjct: 372 YGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSH 414


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/517 (39%), Positives = 309/517 (59%), Gaps = 20/517 (3%)

Query: 102 WNTIIGSYT-----TNGREQEAVALFINMLREGKTPYSEF-TVSSVLCACAAKRDVFECK 155
           WNT+I ++        G     +++F+ M   G  P  +F T   +L + A+   +   +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQP--DFHTFPFLLQSFASPSLLHLGR 84

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
            +H   L+  +  + FV T+L+ +Y+  GL+  A  +F  MPERN ++WS M+ G+V+  
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCG 144

Query: 216 LYEEALILFRRAQVLGL---EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            Y+EAL LFR  Q+LG+     N+FT+S V+ AC  L AL  GK  HA + K G   ++ 
Sbjct: 145 QYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVV 204

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             ++L+DMYAKCG V  A +VFS +   K+V+ W+ MISG + H  + E + LF KM   
Sbjct: 205 LGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ 264

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+ PN  T+++V  AC H G+V +GK Y   M + ++++P + HY CM+D+ GRAG I E
Sbjct: 265 GVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKE 324

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           A++++ +MP +    +WG+LL+  R + ++E  E+A K+L  +EP N+G ++LLSN+YA 
Sbjct: 325 AWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAK 384

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
             RWE+V   R L+    +KK    S +E+         G  +HP   +I+  LE+++E 
Sbjct: 385 RGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILER 444

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +K  GY   T+  L D+++  K+  L  HSEKLAL +G +   PG PIRI+KNLRIC DC
Sbjct: 445 LKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDC 504

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H  +K  S++  RE IVRD NRFHHFT G CSC D+W
Sbjct: 505 HVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 168/338 (49%), Gaps = 8/338 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T    LQS A       G+  HA+I+  GL  D      LI+ YS  GL+  AR +F
Sbjct: 63  DFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLF 122

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALF--INMLREGKTPYSEFTVSSVLCACAAKR 149
             MP+R ++SW+ +I  Y   G+ +EA+ALF  + ML       +EFT+S VL AC    
Sbjct: 123 AVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLG 182

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM-PERNEVTWSSMV 208
            +   K  H +  K  M  +V +GTAL+D+YAKCG +  A+ VF ++ P ++ + WS+M+
Sbjct: 183 ALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMI 242

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GF 267
           +G   + L EE + LF +    G+  N  T  +V CAC     + +GK     + +    
Sbjct: 243 SGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSI 302

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFE 326
              +     +VD+Y + G + +A+ V   +  E +V++W  ++SG   H       +  +
Sbjct: 303 IPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALK 362

Query: 327 KMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLM 363
           K+ +  L P N   Y+ + +  +  G  E  +   DLM
Sbjct: 363 KLIE--LEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLM 398


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 336/575 (58%), Gaps = 12/575 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDE 93
           T+   L +CAR      G+  H  +I   ++ +       L+  Y+  G +    KVF+ 
Sbjct: 304 TMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFET 363

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ I+SWNT+I  +T NG+ +EA+ LF+ M  +G  P   ++++S L AC        
Sbjct: 364 IKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMP-DSYSLASSLSACGTISFSQL 422

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
             Q+H + +K   + N FV  AL+D+YAKCG +  A+++FE + E++ VTW+SM+ GF Q
Sbjct: 423 GAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQ 481

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    EA+ LF +  +  ++ ++ T  SVI AC+ L  L +GK VH  L   G   + + 
Sbjct: 482 NGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYL 541

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L DMY+KCG +  A+ VF  + E+++V W+ MI+G+  H +    + LF +M  +G+
Sbjct: 542 DTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGI 601

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN+ T++ +LSACSH G VE+GK YF+ M  +  V P   H++CM+D+L RAG ++ AY
Sbjct: 602 KPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAY 660

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
            +I ++PF A +S+WG+LL  CR ++ +++ +   K L  ++  + G + LLSNIYA   
Sbjct: 661 QIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEG 720

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
            W++  + R +++   ++K    S +EI         G  +H +  +IY  LE     + 
Sbjct: 721 TWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVH 780

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
              Y  E ++ +       K+  ++ HSEKLA+ FG++   PG  +RI KNLR+C DCHS
Sbjct: 781 AQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHS 840

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           F K AS+I GRE I+RDLNRFH F NGSCSC D+W
Sbjct: 841 FAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 188/344 (54%), Gaps = 5/344 (1%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           V GKV H ++I  G  +D +    L+  Y +   +  A K FD MP R +V+W++I+ ++
Sbjct: 118 VGGKV-HGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNF 176

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             NG+  E + +F  M+ E   P S  T+ SV  AC+    +   + +H + ++  ++ N
Sbjct: 177 VQNGQASEGLDMFSQMISEAVEPDS-VTMLSVTEACSELGSLRLGRSVHGYVVRREIESN 235

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
             +  +L+ +Y K G +  A R+FE++P R    W+ M++ + Q+  ++EAL +F + Q 
Sbjct: 236 ASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQE 295

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM-FAASSLVDMYAKCGCVV 288
             +E NQ T+  V+CACA L  + +G+ VH  + +      + F   +L+++YA  G + 
Sbjct: 296 FKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLR 355

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           D + VF  I+EK ++ WNT+IS F+R+ +  E ++LF +MQ  GL P+  +  S LSAC 
Sbjct: 356 DCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACG 415

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            I   + G      ++K  N   N F  + +ID+  + G +H A
Sbjct: 416 TISFSQLGAQIHGYIIKTGNF--NDFVQNALIDMYAKCGFVHSA 457



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 191/384 (49%), Gaps = 3/384 (0%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA +   GL+     S  LI  Y++ G+   +++VFD  P+     W  +I  Y   G  
Sbjct: 21  HAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFF 80

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           +EAV+L+  M+ + +T  S F   SVL AC+   D+    ++H   +K   + +  V T+
Sbjct: 81  EEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETS 140

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           LL +Y +   + DA + F++MP R+ V WSS+V  FVQN    E L +F +     +E +
Sbjct: 141 LLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPD 200

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             T+ SV  AC+ L +L  G+ VH  + +    SN    +SL+ MY K G +  A  +F 
Sbjct: 201 SVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFE 260

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  +    W  MIS +++     E + +F KMQ+  + PN+ T + VL AC+ +G V++
Sbjct: 261 NVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKE 320

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS- 414
           G+S    ++++       F    ++++    G + + + +   +  + T   W +L++  
Sbjct: 321 GRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIK-EKTILSWNTLISIF 379

Query: 415 CRNYRNLE-LAEIAAKQLFGMEPD 437
            RN +  E L      Q  G+ PD
Sbjct: 380 TRNGQPEEALLLFVQMQTQGLMPD 403



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 150/313 (47%), Gaps = 11/313 (3%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           QLH       + R+    T L++ YA+ G+   + RVF++ P+ +   W  ++  +V   
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 216 LYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +EEA+ L+         + + F   SV+ AC+G   L  G +VH  + K GF S+    
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+ MY +  C+ DA   F  +  ++VV W++++  F ++ ++ E + +F +M    + 
Sbjct: 139 TSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVE 198

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T +SV  ACS +G +  G+S    +V++  +  N    + +I + G+ G ++ A  
Sbjct: 199 PDSVTMLSVTEACSELGSLRLGRSVHGYVVRRE-IESNASLNNSLIVMYGKLGDLYSAER 257

Query: 395 LILNMPFDATASMWGSLLASCRNYRNL---ELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           L  N+P   TA  W  ++ SC N        L   A  Q F MEP    N + +  +  A
Sbjct: 258 LFENVPCRMTAP-WTPMI-SCYNQSGCFQEALNVFAKMQEFKMEP----NQVTMVGVLCA 311

Query: 452 NRRWEEVARARKL 464
             R   V   R +
Sbjct: 312 CARLGRVKEGRSV 324


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 336/604 (55%), Gaps = 59/604 (9%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGL----ISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           HA  I  G   DTL +  ++ F +   L    +  A K+F++MPQR   SWNTII  ++ 
Sbjct: 43  HAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSE 102

Query: 112 NGREQE--AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           +  ++   A+ LF  M+ +     + FT  SVL ACA    + E KQ+H  ALK     +
Sbjct: 103 SDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGD 162

Query: 170 VFVGTALLDVYAKCGLISD----------------------------------------- 188
            FV + L+ +Y  CG + D                                         
Sbjct: 163 EFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLG 222

Query: 189 ----ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
               A  +F+ M +R+ V+W++M++G+  N  +++A+ +FR  +   +  N  T+ SV+ 
Sbjct: 223 DCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLP 282

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           A + L +L  G+ +H     +G   +    S+L+DMY+KCG +  A  VF  +  +NV+ 
Sbjct: 283 AISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVIT 342

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W+ MI+GF+ H ++ + +  F KM+QAG+ P++  YI++L+ACSH G+VE+G+ YF  MV
Sbjct: 343 WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMV 402

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
               + P + HY CM+D+LGR+GL+ EA + ILNMP      +W +LL +CR   N+E+ 
Sbjct: 403 SVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMG 462

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG- 483
           +  A  L  M P ++G ++ LSN+YA+   W EV+  R  +++ +++K+   S ++I G 
Sbjct: 463 KRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGV 522

Query: 484 -------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKL 536
                    +HP+  EI S L ++ ++++  GY+P T   L ++E+  K+ +L +HSEK+
Sbjct: 523 LHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKI 582

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A  FGL+   PG PIRI+KNLRIC DCHS +K  S++  R+  VRD  RFHHF +GSCSC
Sbjct: 583 ATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSC 642

Query: 597 WDFW 600
            D+W
Sbjct: 643 MDYW 646



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 147/317 (46%), Gaps = 56/317 (17%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL----ISDASRVFESMPERNEVTW 204
           R + +  Q+H   +K+   R+      +L   A   L    +  A ++F  MP+RN  +W
Sbjct: 34  RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93

Query: 205 SSMVAGFVQNELYEEALI----LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
           ++++ GF +++  ++ALI     +       +E N+FT  SV+ ACA    + +GKQ+H 
Sbjct: 94  NTIIRGFSESD-EDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCG----------------------------------- 285
           +  K GFG + F  S+LV MY  CG                                   
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWN 212

Query: 286 CVVDAY----------FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            ++D Y           +F  + +++VV WNTMISG+S +    + + +F +M++  + P
Sbjct: 213 VMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRP 272

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           N  T +SVL A S +G +E G+ +  L  +   +  +    S +ID+  + G+I +A  +
Sbjct: 273 NYVTLVSVLPAISRLGSLELGE-WLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHV 331

Query: 396 ILNMPFDATASMWGSLL 412
              +P +   + W +++
Sbjct: 332 FERLPRENVIT-WSAMI 347



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 5/178 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L + +R  +   G+  H      G+  D +  + LI+ YSKCG+I  A  VF+ +
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+  +++W+ +I  +  +G+  +A+  F  M + G  P S+    ++L AC+    V E 
Sbjct: 336 PRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP-SDVAYINLLTACSHGGLVEEG 394

Query: 155 KQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           ++    + ++     R    G  ++D+  + GL+ +A     +MP + ++V W +++ 
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYG-CMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLG 451


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 332/587 (56%), Gaps = 26/587 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN-----ILINFYSKCGLISGARK 89
           T  + L +C+R      G+  HA +I     +D L +N      L++ Y+    +  AR+
Sbjct: 275 TFASALPACSRLELLDVGREMHAYVI----KDDELAANSFVASALVDMYATHEQVGKARQ 330

Query: 90  VFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           VFD +P   + +  WN +I  Y   G ++EA+ LF  M  E      E T++SVL ACA 
Sbjct: 331 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA- 389

Query: 148 KRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + F  K+ +H + +K  M  N FV  AL+D+YA+ G    A R+F  +   + V+W++
Sbjct: 390 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 449

Query: 207 MVAGFVQNELYEEALILFRRAQVL---GLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           ++ G V      +A  L R  Q L   G+  N  T+ +++  CA LAA  +GK++H    
Sbjct: 450 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 509

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +    +++   S+LVDMYAKCGC+  +  VF  +  +N + WN +I  +  H    E  +
Sbjct: 510 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 569

Query: 324 LFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           LF++M  +G   PNE T+++ L+ACSH GMV++G   F  M + H V P     +C++DI
Sbjct: 570 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 629

Query: 383 LGRAGLIHEAYDLILNMPF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG + EAY ++ +M   +   S W ++L +CR +RN+ L EIA ++L  +EP+ A +
Sbjct: 630 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 689

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEI 493
           ++LL NIY+A  +W   A  R  +R   V KE   SW+E+ G        +  HP   E+
Sbjct: 690 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 749

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           ++ +E L  EM   GY P+T   LHD++D  K  +L  HSEKLA+ FGL+   PG  IR+
Sbjct: 750 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 809

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLR+C DCH   KF S++ GRE ++RD+ RFHHF NG CSC D+W
Sbjct: 810 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 186/368 (50%), Gaps = 13/368 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGAR 88
           T +S L+A     A   A   G+  HA  +  GL   +     N L++ Y++ GL++ A+
Sbjct: 166 TLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQ 225

Query: 89  KVF-DEMPQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           ++F    P R  +V+WNT++     +G   EAV    +M+  G  P    T +S L AC+
Sbjct: 226 RLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRP-DGVTFASALPACS 284

Query: 147 AKRDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV--T 203
               +   +++H + +K   +  N FV +AL+D+YA    +  A +VF+ +P+  +    
Sbjct: 285 RLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 344

Query: 204 WSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W++M+ G+ Q  + EEAL LF R +   G    + T++SV+ ACA   A    + VH  +
Sbjct: 345 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 404

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G   N F  ++L+DMYA+ G    A  +F+ ++  +VV WNT+I+G        +  
Sbjct: 405 VKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAF 464

Query: 323 ILFEKMQQ---AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            L  +MQQ    G+ PN  T +++L  C+ +    +GK      V+ H +  +V   S +
Sbjct: 465 QLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSAL 523

Query: 380 IDILGRAG 387
           +D+  + G
Sbjct: 524 VDMYAKCG 531



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 201/423 (47%), Gaps = 22/423 (5%)

Query: 9   HKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL--NN 66
           H    ++ SS  +AS        + S L   ++S A  R     +  HA  +  GL    
Sbjct: 38  HAAALRALSSITMASPQQQ---LDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRP 94

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRC--IVSWNTIIGSYTTNGREQEAVALFIN 124
               +N L+  Y++CG ++ A +VF  +       VS+N++I +     R  +     + 
Sbjct: 95  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLF-RRWDHALAALR 153

Query: 125 MLREGKTPYSEFTVSSVLCAC----AAKRDVFECKQLHVFALKAAM--DRNVFVGTALLD 178
            +  G  P + FT+ SVL A     AA   V   ++ H FALK  +      F   ALL 
Sbjct: 154 AMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLS 213

Query: 179 VYAKCGLISDASRVFE-SMPERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +YA+ GL++DA R+F  + P R + VTW++MV+  VQ+ +++EA+        LG+  + 
Sbjct: 214 MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDG 273

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            T +S + AC+ L  L  G+++HA + K     +N F AS+LVDMYA    V  A  VF 
Sbjct: 274 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 333

Query: 296 GIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGM 352
            + +  K + +WN MI G+++     E + LF +M+ +AG  P E T  SVL AC+    
Sbjct: 334 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR-SE 392

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
              GK      V +  +  N F  + ++D+  R G    A  +   +      S W +L+
Sbjct: 393 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVS-WNTLI 451

Query: 413 ASC 415
             C
Sbjct: 452 TGC 454



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 148/288 (51%), Gaps = 6/288 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ + L +CAR  A    +  H  ++  G+  +    N L++ Y++ G    AR++F  
Sbjct: 379 TTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAM 438

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINM--LREGKTPYSEFTVSSVLCACAAKRDV 151
           +    +VSWNT+I      G   +A  L   M  L EG    +  T+ ++L  CA     
Sbjct: 439 VDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAP 498

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++H +A++ A+D +V VG+AL+D+YAKCG ++ +  VF+ +P RN +TW+ ++  +
Sbjct: 499 ARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAY 558

Query: 212 VQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGS 269
             + L  EA +LF R    G    N+ T  + + AC+    + +G Q+ HA+    G   
Sbjct: 559 GMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 618

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRH 315
                + +VD+  + G + +AY + + +E  E+ V  W+TM+     H
Sbjct: 619 TPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLH 666


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 343/565 (60%), Gaps = 18/565 (3%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ-RCIVSWNTIIGSYTT 111
           K  H   +  G ++ +  +N  + +YSK GL+  A  VF  M + R  VSWN++I +Y  
Sbjct: 158 KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQ 217

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +    +A+AL+  M+ +G      FT++SVL A  +   +   +Q H   +KA   +N  
Sbjct: 218 HKEGAKALALYKEMIFKG-FKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSH 276

Query: 172 VGTALLDVYAKCGL---ISDASRVFESMPERNEVTWSSMVAGFVQNE-LYEEALILFRRA 227
           VG+ L+D Y+KCG    + D+ +VF+ +   + V W++M++G+  NE L EEA+  FR+ 
Sbjct: 277 VGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQM 336

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS-SLVDMYAKCGC 286
           Q +G   +  +   V  AC+ L++  Q KQ+H +  K+   SN  + + +L+ +Y K G 
Sbjct: 337 QRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGN 396

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + DA +VF  + E N V +N MI G+++H    E ++L+++M  +G+ PN+ T+++VLSA
Sbjct: 397 LQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSA 456

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           C+H G V++G+ YF+ M +   + P   HYSCMID+LGRAG + EA   I  MP+   + 
Sbjct: 457 CAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSV 516

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
            W +LL +CR ++N+ LAE AA +L  M+P  A  +++L+N+YA  R+WEE+A  RK +R
Sbjct: 517 AWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMR 576

Query: 467 DSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
              ++K+   SW+E+K K++        HP I E+   LE+++++MKK+GY  + +  + 
Sbjct: 577 GKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMV 636

Query: 519 DVEDSRKQEL---LIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
             +++ + +    L HHSEKLA+ FGLM    G  + ++KNLRICGDCH+ +KF S +AG
Sbjct: 637 KEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAG 696

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           RE IVRD  RFH F +G CSC D+W
Sbjct: 697 REIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 200/410 (48%), Gaps = 39/410 (9%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           N    +  T +  L     ER    GK  HA  +   + + T  SN  +N YSKCG +S 
Sbjct: 2   NQTPWKFKTFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSY 61

Query: 87  -------------------------------ARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
                                          AR++FDE+PQ   VS+NT+I  Y  + RE
Sbjct: 62  ARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGY-ADARE 120

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
             A  +    +R+       FT+S ++ AC  + D+   KQLH F++    D    V  A
Sbjct: 121 TFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNA 178

Query: 176 LLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
            +  Y+K GL+ +A  VF  M E R+EV+W+SM+  + Q++   +AL L++     G + 
Sbjct: 179 FVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKI 238

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG---CVVDAY 291
           + FT++SV+ A   L  LI G+Q H  L K GF  N    S L+D Y+KCG    + D+ 
Sbjct: 239 DMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSE 298

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHAR-SVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            VF  I   ++V+WNTMISG+S +   S E +  F +MQ+ G  P++ +++ V SACS++
Sbjct: 299 KVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNL 358

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
               + K    L +K H     +   + +I +  ++G + +A  +   MP
Sbjct: 359 SSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP 408



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 160/348 (45%), Gaps = 44/348 (12%)

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD- 188
           +TP+   T   +L    A+RD+F  K LH   +K+ +  + ++    +++Y+KCG +S  
Sbjct: 3   QTPWKFKTFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYA 62

Query: 189 ------------------------------ASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                                         A ++F+ +P+ + V+++++++G+       
Sbjct: 63  RAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETF 122

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
            A++LF+R + LG E + FT+S +I AC     LI  KQ+H      GF S     ++ V
Sbjct: 123 AAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFV 180

Query: 279 DMYAKCGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
             Y+K G + +A  VF G++E ++ V WN+MI  + +H    + + L+++M   G   + 
Sbjct: 181 TYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDM 240

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD--L 395
            T  SVL+A + +  +  G+ +   ++K      N    S +ID   + G     YD   
Sbjct: 241 FTLASVLNALTSLDHLIGGRQFHGKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYDSEK 299

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAK-----QLFGMEPDN 438
           +          +W ++++      N EL+E A K     Q  G  PD+
Sbjct: 300 VFQEILSPDLVVWNTMISGYS--MNEELSEEAVKSFRQMQRIGHRPDD 345


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 332/587 (56%), Gaps = 26/587 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN-----ILINFYSKCGLISGARK 89
           T  + L +C+R      G+  HA +I     +D L +N      L++ Y+    +  AR+
Sbjct: 273 TFASALPACSRLELLDVGREMHAYVI----KDDELAANSFVASALVDMYATHEQVGKARQ 328

Query: 90  VFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           VFD +P   + +  WN +I  Y   G ++EA+ LF  M  E      E T++SVL ACA 
Sbjct: 329 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA- 387

Query: 148 KRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + F  K+ +H + +K  M  N FV  AL+D+YA+ G    A R+F  +   + V+W++
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447

Query: 207 MVAGFVQNELYEEALILFRRAQVL---GLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           ++ G V      +A  L R  Q L   G+  N  T+ +++  CA LAA  +GK++H    
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +    +++   S+LVDMYAKCGC+  +  VF  +  +N + WN +I  +  H    E  +
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 567

Query: 324 LFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           LF++M  +G   PNE T+++ L+ACSH GMV++G   F  M + H V P     +C++DI
Sbjct: 568 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 627

Query: 383 LGRAGLIHEAYDLILNMPF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG + EAY ++ +M   +   S W ++L +CR +RN+ L EIA ++L  +EP+ A +
Sbjct: 628 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 687

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEI 493
           ++LL NIY+A  +W   A  R  +R   V KE   SW+E+ G        +  HP   E+
Sbjct: 688 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 747

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           ++ +E L  EM   GY P+T   LHD++D  K  +L  HSEKLA+ FGL+   PG  IR+
Sbjct: 748 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 807

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLR+C DCH   KF S++ GRE ++RD+ RFHHF NG CSC D+W
Sbjct: 808 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 186/368 (50%), Gaps = 13/368 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGAR 88
           T +S L+A     A   A   G+  HA  +  GL   +     N L++ Y++ GL++ A+
Sbjct: 164 TLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQ 223

Query: 89  KVF-DEMPQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           ++F    P R  +V+WNT++     +G   EAV    +M+  G  P    T +S L AC+
Sbjct: 224 RLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRP-DGVTFASALPACS 282

Query: 147 AKRDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV--T 203
               +   +++H + +K   +  N FV +AL+D+YA    +  A +VF+ +P+  +    
Sbjct: 283 RLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 342

Query: 204 WSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W++M+ G+ Q  + EEAL LF R +   G    + T++SV+ ACA   A    + VH  +
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 402

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G   N F  ++L+DMYA+ G    A  +F+ ++  +VV WNT+I+G        +  
Sbjct: 403 VKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAF 462

Query: 323 ILFEKMQQ---AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            L  +MQQ    G+ PN  T +++L  C+ +    +GK      V+ H +  +V   S +
Sbjct: 463 QLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSAL 521

Query: 380 IDILGRAG 387
           +D+  + G
Sbjct: 522 VDMYAKCG 529



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 201/423 (47%), Gaps = 22/423 (5%)

Query: 9   HKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL--NN 66
           H    ++ SS  +AS        + S L   ++S A  R     +  HA  +  GL    
Sbjct: 36  HAAALRALSSITMASPQQQ---LDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRP 92

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRC--IVSWNTIIGSYTTNGREQEAVALFIN 124
               +N L+  Y++CG ++ A +VF  +       VS+N++I +     R  +     + 
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLF-RRWDHALAALR 151

Query: 125 MLREGKTPYSEFTVSSVLCAC----AAKRDVFECKQLHVFALKAAM--DRNVFVGTALLD 178
            +  G  P + FT+ SVL A     AA   V   ++ H FALK  +      F   ALL 
Sbjct: 152 AMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLS 211

Query: 179 VYAKCGLISDASRVFE-SMPERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +YA+ GL++DA R+F  + P R + VTW++MV+  VQ+ +++EA+        LG+  + 
Sbjct: 212 MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDG 271

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            T +S + AC+ L  L  G+++HA + K     +N F AS+LVDMYA    V  A  VF 
Sbjct: 272 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 331

Query: 296 GIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGM 352
            + +  K + +WN MI G+++     E + LF +M+ +AG  P E T  SVL AC+    
Sbjct: 332 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR-SE 390

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
              GK      V +  +  N F  + ++D+  R G    A  +   +      S W +L+
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVS-WNTLI 449

Query: 413 ASC 415
             C
Sbjct: 450 TGC 452



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 148/288 (51%), Gaps = 6/288 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ + L +CAR  A    +  H  ++  G+  +    N L++ Y++ G    AR++F  
Sbjct: 377 TTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAM 436

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINM--LREGKTPYSEFTVSSVLCACAAKRDV 151
           +    +VSWNT+I      G   +A  L   M  L EG    +  T+ ++L  CA     
Sbjct: 437 VDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAP 496

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++H +A++ A+D +V VG+AL+D+YAKCG ++ +  VF+ +P RN +TW+ ++  +
Sbjct: 497 ARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAY 556

Query: 212 VQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGS 269
             + L  EA +LF R    G    N+ T  + + AC+    + +G Q+ HA+    G   
Sbjct: 557 GMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 616

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRH 315
                + +VD+  + G + +AY + + +E  E+ V  W+TM+     H
Sbjct: 617 TPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLH 664


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 321/573 (56%), Gaps = 45/573 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+     V GK  H     +GL++     N L++ Y KCG +S AR V DEM
Sbjct: 143 TFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 202

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSWN+++  Y  N R  +A+ +   M    K  +   T++S+L A +        
Sbjct: 203 SRRDVVSWNSLVAGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSN------- 254

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                         NV        +Y K         +F  M +++ V+W+ M+  +++N
Sbjct: 255 ----------TTTENV--------MYVK--------DMFFKMGKKSLVSWNVMIGVYMKN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +  EA+ L+   +  G E +  +I+SV+ AC   +AL  GK++H  + +     N+   
Sbjct: 289 AMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCGC+  A  VF  ++ ++VV W  MIS +    R  + + LF KMQ +GL 
Sbjct: 349 NALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLV 408

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+   +++ L+ACSH G++E+G+S F LM   + + P + H +CM+D+LGRAG + EAY 
Sbjct: 409 PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYK 468

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +    +WG+LL +CR + N ++  +AA +LF + P+ +G ++LLSNIYA   R
Sbjct: 469 FIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGR 528

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WEEV   R +++   +KK    S VE+         G R+HP+ AEIY +L+ LV++MK+
Sbjct: 529 WEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKE 588

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL---CPGVPIRIMKNLRICGDC 563
           LGY P++E  LHDVE+  K+  L  HSEKLA+ F LM          IRI KNLRICGDC
Sbjct: 589 LGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDC 648

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           H   K  S+I  RE I+RD NRFH F  G CSC
Sbjct: 649 HVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   + +H   +   +  N  +G  L+  YA    ++ A +VF+ +PERN +  + M+ 
Sbjct: 55  DLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIR 114

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +V N  Y E + +F       ++ + +T   V+ AC+    ++ GK++H    K G  S
Sbjct: 115 SYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSS 174

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            +F  + LV MY KCG + +A  V   +  ++VV WN++++G++++ R  + + +  +M+
Sbjct: 175 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREME 234

Query: 330 QAGLHPNEQTYISVLSACSHIGM--VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
              +  +  T  S+L A S+     V   K  F  M K+     ++  ++ MI +  +  
Sbjct: 235 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKK-----SLVSWNVMIGVYMKNA 289

Query: 388 LIHEAYDLILNMP---FDATASMWGSLLASCRNYRNLELAE 425
           +  EA +L   M    F+  A    S+L +C +   L L +
Sbjct: 290 MPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGK 330


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 328/559 (58%), Gaps = 25/559 (4%)

Query: 66   NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
             D ++ NI+I+ Y + G +  +  +F  +P + +VSWNTI+      G E++A+     M
Sbjct: 454  GDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCM 513

Query: 126  LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
            +  G T +S  T S  L   ++   V   +QLH   LK    R+ F+ ++L+++Y KCG 
Sbjct: 514  VECG-TEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGR 572

Query: 186  ISDASRVFESMP----------------ERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            + +AS V + +P                +   V+W  MV+G+V N  YE+ L  FR    
Sbjct: 573  MDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVR 632

Query: 230  LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
              +  +  T++++I ACA    L  G+ VHA   K G   + +  SSL+DMY+K G + D
Sbjct: 633  ELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDD 692

Query: 290  AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
            A+ +F    E N+V W +MISG + H +  + + LFE+M   G+ PNE T++ VL+AC H
Sbjct: 693  AWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCH 752

Query: 350  IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
             G++E+G  YF +M   + + P V H + M+D+ GRAG + E  + I         S+W 
Sbjct: 753  AGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWK 812

Query: 410  SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
            S L+SCR ++N+E+ +  ++ L  + P + G ++LLSN+ A+N RW+E AR R L+    
Sbjct: 813  SFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRG 872

Query: 470  VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
            +KK+  +SW+++K        G R+HP+  EIYS L+ L+  +K++GY  + +  + DVE
Sbjct: 873  IKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVE 932

Query: 522  DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
            + + + L+ HHSEKLA+ FG++      PIRI+KNLRIC DCH+F+K+AS++  RE I+R
Sbjct: 933  EEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILR 992

Query: 582  DLNRFHHFTNGSCSCWDFW 600
            D++RFHHF +G CSC D+W
Sbjct: 993  DIHRFHHFKHGGCSCGDYW 1011



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 201/430 (46%), Gaps = 59/430 (13%)

Query: 40  LQSCAR-----ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           LQSC+         P      HA  +  G      ++N L+  Y K   +  ARK+FDE+
Sbjct: 291 LQSCSLFHSTISNGPPPLGTLHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEI 350

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           PQR   +W  +I  ++  G  +    LF  M  +G  P +++T+SS+   C+   ++   
Sbjct: 351 PQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACP-NQYTLSSLFKCCSLDINLQLG 409

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H + L+  +D +V +G ++LD+Y KC +   A RVFE M E + V+W+ M++ +++ 
Sbjct: 410 KGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRA 469

Query: 215 ELYEEALILFRRA----------------------QVL---------GLEYNQFTISSVI 243
              E++L +FRR                       Q L         G E++  T S  +
Sbjct: 470 GDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIAL 529

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE----- 298
              + L+ +  G+Q+H ++ K GF  + F  SSLV+MY KCG + +A  V   +      
Sbjct: 530 ILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLK 589

Query: 299 -----------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
                      +  +V W  M+SG+  + +  + +  F  M +  +  + +T  +++SAC
Sbjct: 590 NGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISAC 649

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHY--SCMIDILGRAGLIHEAYDLILNMPFDATA 405
           ++ G++E G+    +    H +   +  Y  S +ID+  ++G + +A+  I     +   
Sbjct: 650 ANAGILEFGR---HVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWT-IFRQTNEPNI 705

Query: 406 SMWGSLLASC 415
             W S+++ C
Sbjct: 706 VFWTSMISGC 715



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 145/319 (45%), Gaps = 24/319 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---------------- 95
           G+  H  ++  G   D    + L+  Y KCG +  A  V  ++P                
Sbjct: 541 GRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKEL 600

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +  IVSW  ++  Y  NG+ ++ +  F  M+RE        TV++++ ACA    +   +
Sbjct: 601 KAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRE-LVVVDIRTVTTIISACANAGILEFGR 659

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
            +H +  K     + +VG++L+D+Y+K G + DA  +F    E N V W+SM++G   + 
Sbjct: 660 HVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHG 719

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN--MFA 273
             ++A+ LF      G+  N+ T   V+ AC     L +G +   ++ K  +  N  +  
Sbjct: 720 QGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMM-KDAYCINPGVEH 778

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQ 330
            +S+VD+Y + G + +   F+F         +W + +S    H ++VE+     +M  Q 
Sbjct: 779 CTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLH-KNVEMGKWVSEMLLQV 837

Query: 331 AGLHPNEQTYISVLSACSH 349
           A   P     +S + A +H
Sbjct: 838 APSDPGAYVLLSNMCASNH 856



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 3/181 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            ++ T+   + +CA       G+  HA    +G   D    + LI+ YSK G +  A  +
Sbjct: 637 VDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTI 696

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F +  +  IV W ++I     +G+ ++A+ LF  ML +G  P +E T   VL AC     
Sbjct: 697 FRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIP-NEVTFLGVLNACCHAGL 755

Query: 151 VFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR-VFESMPERNEVTWSSMV 208
           + E C+   +      ++  V   T+++D+Y + G +++    +FE+        W S +
Sbjct: 756 LEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSFL 815

Query: 209 A 209
           +
Sbjct: 816 S 816


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 332/587 (56%), Gaps = 26/587 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN-----ILINFYSKCGLISGARK 89
           T  + L +C+R      G+  HA +I     +D L +N      L++ Y+    +  AR+
Sbjct: 273 TFASALPACSRLELLDVGREMHAYVI----KDDELAANSFVASALVDMYATHEQVGKARQ 328

Query: 90  VFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           VFD +P   + +  WN +I  Y   G ++EA+ LF  M  E      E T++SVL ACA 
Sbjct: 329 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA- 387

Query: 148 KRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + F  K+ +H + +K  M  N FV  AL+D+YA+ G    A R+F  +   + V+W++
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447

Query: 207 MVAGFVQNELYEEALILFRRAQVL---GLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           ++ G V      +A  L R  Q L   G+  N  T+ +++  CA LAA  +GK++H    
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +    +++   S+LVDMYAKCGC+  +  VF  +  +N + WN +I  +  H    E  +
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 567

Query: 324 LFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           LF++M  +G   PNE T+++ L+ACSH GMV++G   F  M + H V P     +C++DI
Sbjct: 568 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 627

Query: 383 LGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG + EAY ++ +M   +   S W ++L +CR +RN+ L EIA ++L  +EP+ A +
Sbjct: 628 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 687

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEI 493
           ++LL NIY+A  +W   A  R  +R   V KE   SW+E+ G        +  HP   E+
Sbjct: 688 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 747

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           ++ +E L  EM   GY P+T   LHD++D  K  +L  HSEKLA+ FGL+   PG  IR+
Sbjct: 748 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 807

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLR+C DCH   KF S++ GRE ++RD+ RFHHF NG CSC D+W
Sbjct: 808 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 186/368 (50%), Gaps = 13/368 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGAR 88
           T +S L+A     A   A   G+  HA  +  GL   +     N L++ Y++ GL++ A+
Sbjct: 164 TLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQ 223

Query: 89  KVF-DEMPQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           ++F    P R  +V+WNT++     +G   EAV    +M+  G  P    T +S L AC+
Sbjct: 224 RLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRP-DGVTFASALPACS 282

Query: 147 AKRDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV--T 203
               +   +++H + +K   +  N FV +AL+D+YA    +  A +VF+ +P+  +    
Sbjct: 283 RLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 342

Query: 204 WSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W++M+ G+ Q  + EEAL LF R +   G    + T++SV+ ACA   A    + VH  +
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 402

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G   N F  ++L+DMYA+ G    A  +F+ ++  +VV WNT+I+G        +  
Sbjct: 403 VKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAF 462

Query: 323 ILFEKMQQ---AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            L  +MQQ    G+ PN  T +++L  C+ +    +GK      V+ H +  +V   S +
Sbjct: 463 QLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSAL 521

Query: 380 IDILGRAG 387
           +D+  + G
Sbjct: 522 VDMYAKCG 529



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 201/423 (47%), Gaps = 22/423 (5%)

Query: 9   HKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL--NN 66
           H    ++ SS  +AS        + S L   ++S A  R     +  HA  +  GL    
Sbjct: 36  HAAALRALSSITMASPQQQ---LDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRP 92

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRC--IVSWNTIIGSYTTNGREQEAVALFIN 124
               +N L+  Y++CG ++ A +VF  +       VS+N++I +     R  +     + 
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLF-RRWDHALAALR 151

Query: 125 MLREGKTPYSEFTVSSVLCAC----AAKRDVFECKQLHVFALKAAM--DRNVFVGTALLD 178
            +  G  P + FT+ SVL A     AA   V   ++ H FALK  +      F   ALL 
Sbjct: 152 AMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLS 211

Query: 179 VYAKCGLISDASRVFE-SMPERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           +YA+ GL++DA R+F  + P R + VTW++MV+  VQ+ +++EA+        LG+  + 
Sbjct: 212 MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDG 271

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
            T +S + AC+ L  L  G+++HA + K     +N F AS+LVDMYA    V  A  VF 
Sbjct: 272 VTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 331

Query: 296 GIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGM 352
            + +  K + +WN MI G+++     E + LF +M+ +AG  P E T  SVL AC+    
Sbjct: 332 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR-SE 390

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
              GK      V +  +  N F  + ++D+  R G    A  +   +      S W +L+
Sbjct: 391 AFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVS-WNTLI 449

Query: 413 ASC 415
             C
Sbjct: 450 TGC 452



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 148/288 (51%), Gaps = 6/288 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ + L +CAR  A    +  H  ++  G+  +    N L++ Y++ G    AR++F  
Sbjct: 377 TTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAM 436

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINM--LREGKTPYSEFTVSSVLCACAAKRDV 151
           +    +VSWNT+I      G   +A  L   M  L EG    +  T+ ++L  CA     
Sbjct: 437 VDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAP 496

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++H +A++ A+D +V VG+AL+D+YAKCG ++ +  VF+ +P RN +TW+ ++  +
Sbjct: 497 ARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAY 556

Query: 212 VQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGS 269
             + L  EA +LF R    G    N+ T  + + AC+    + +G Q+ HA+    G   
Sbjct: 557 GMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 616

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRH 315
                + +VD+  + G + +AY + + +E  E+ V  W+TM+     H
Sbjct: 617 TPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLH 664


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 336/594 (56%), Gaps = 30/594 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +C+  R    G+  H   I  G +  T   N L   Y K G +    + F   
Sbjct: 179 TLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGT 238

Query: 95  PQRCIVSWNTIIGSYTTNGREQE-AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P + +++W T+I S   +    +  ++LF++ML  G  P +EFT++SV+  C A+ D+  
Sbjct: 239 PDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMP-NEFTLTSVMSLCGARLDMSL 297

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+  F  K   + N+ V  + + +Y + G   +A R+FE M   + +TW++M++G+ Q
Sbjct: 298 GKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQ 357

Query: 214 ------NELYE-----EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
                 ++L+      +AL LFR      L+ + FT SS++  C+ + AL QG+Q+HA  
Sbjct: 358 IMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANT 417

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            KTG  S++   S+LV+MY KCG +  A   F  +  +  V W +MISG+S+H RS + +
Sbjct: 418 IKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAI 477

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LFE M  +G  PNE T++S+LSACS+ G+VE+ + YFD+M  ++++ P V HY CM+D+
Sbjct: 478 QLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDM 537

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
             R G + +A+  I    F+   ++W SL+A CR++ N+ELA  AA +L  ++P     +
Sbjct: 538 FVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETY 597

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIY 494
           +LL N+Y +  RW +VAR RKL +  +V   + +SW+ I+ K          HP+  E+Y
Sbjct: 598 VLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELY 657

Query: 495 SKLEKLVEEMKKLGYK-----PETEHDLHDVEDSRKQ----ELLIHHSEKLALTFGLMCL 545
             LE L+E+ K +GY+     PE   D  + +D +       L+ HHSE+LA+  GL+  
Sbjct: 658 QLLENLLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLET 717

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
            PG  +R+ KN+ +C DCHS +K+ S +A RE +VRD  R H F +G CSC DF
Sbjct: 718 PPGATVRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 771



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 195/386 (50%), Gaps = 15/386 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L  C         +  H  ++  G   D   +  L+N Y +C     AR++FD MP + +
Sbjct: 83  LHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNV 142

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W  +I  +T N     A+ +F+ ML  G+ P S +T+  +L AC+A R +   +Q+H 
Sbjct: 143 VTWTALITGHTLNSEPALALEVFVEMLELGRYP-SHYTLGGMLSACSAARRIDLGQQVHG 201

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY-E 218
           +++K   D    +G +L  +Y K G +    R F+  P++N +TW++M++   ++E Y +
Sbjct: 202 YSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLD 261

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
             L LF      G+  N+FT++SV+  C     +  GKQV A   K G  +N+   +S +
Sbjct: 262 LGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTM 321

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR---------HARS--VEVMILFEK 327
            +Y + G   +A  +F  ++  +++ WN MISG+++         HARS   + + LF  
Sbjct: 322 YLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRD 381

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           + ++ L P+  T+ S+LS CS +  +E+G+      +K    L +V   S ++++  + G
Sbjct: 382 LVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKT-GCLSDVVVNSALVNMYNKCG 440

Query: 388 LIHEAYDLILNMPFDATASMWGSLLA 413
            I  A    + MP   T   W S+++
Sbjct: 441 SIECATKAFVEMP-TRTPVTWTSMIS 465



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 2/226 (0%)

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
           + MLR+G+T  S   V  +L  C     +   + LH   +K     ++FV T+L++VY +
Sbjct: 65  MGMLRDGQTVQSAMYVP-LLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMR 123

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           C    DA R+F+ MP++N VTW++++ G   N     AL +F     LG   + +T+  +
Sbjct: 124 CASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGM 183

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + AC+    +  G+QVH    K G  +     +SL  +Y K G +      F G  +KNV
Sbjct: 184 LSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNV 243

Query: 303 VLWNTMISGFSRHARSVEV-MILFEKMQQAGLHPNEQTYISVLSAC 347
           + W TMIS  +     +++ + LF  M + G+ PNE T  SV+S C
Sbjct: 244 ITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 289



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 15/187 (8%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T  + L  C+   A  +G+  HA  I  G  +D + ++ L+N Y+KCG I  A K F
Sbjct: 390 DLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAF 449

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EMP R  V+W ++I  Y+ +GR Q+A+ LF +M+  G  P +E T  S+L AC+    V
Sbjct: 450 VEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARP-NEITFVSLLSACSYAGLV 508

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYA-------KCGLISDA-SRVFESMPERNEVT 203
            E ++         M RN +    L+D Y        + G + DA S +  +  E NE  
Sbjct: 509 EEAERYF------DMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAI 562

Query: 204 WSSMVAG 210
           WSS+VAG
Sbjct: 563 WSSLVAG 569



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 11/211 (5%)

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           +EA+ + R  Q +           ++  C     L   + +H  + KTG  ++MF A+SL
Sbjct: 62  QEAMGMLRDGQTV----QSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSL 117

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           V++Y +C    DA  +F G+ +KNVV W  +I+G + ++     + +F +M + G +P+ 
Sbjct: 118 VNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSH 177

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
            T   +LSACS    ++ G+      +K   + + ++ +  C   +  ++G +       
Sbjct: 178 YTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCR--LYCKSGDLESGLRAF 235

Query: 397 LNMPFDATASMWGSLLASC---RNYRNLELA 424
              P D     W ++++SC    NY +L L+
Sbjct: 236 KGTP-DKNVITWTTMISSCAEDENYLDLGLS 265


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/576 (37%), Positives = 321/576 (55%), Gaps = 43/576 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L+ CA E   V G+V H +++  G  +D      L++ Y+KCG I  A +VFD M
Sbjct: 134 TYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRM 193

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V W  +I  Y    R  +A+ LF  M  EG     E T  SV  A          
Sbjct: 194 LIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLG-DEITAISVASAVGQ------- 245

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                            +G   +        IS A  VF+ M ERN ++W+SM++G+ QN
Sbjct: 246 -----------------LGDGRM-------AISRARLVFDRMEERNGISWNSMLSGYTQN 281

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               +AL LF + Q    + N  T   ++ AC+ L +   G+++H  +  +    +    
Sbjct: 282 GRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLR 341

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           ++++DMY KCG +  A  +F+  E  E++V  WN +ISG+  H    E + LF +MQ  G
Sbjct: 342 NAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEG 401

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + PN+ T+ S+LSACSH G++++G+  F  M K  +V P + HY+CM+D+LGRAG ++EA
Sbjct: 402 VEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEA 460

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           + LI  +P   +  +WG+LL +CR + N EL EIAA  LF +EP++ G ++L+SNIYAA+
Sbjct: 461 FRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAAS 520

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEM 504
            +W+EV   R+ ++   +KK  + S +E            ++ P   E+Y K+E L  EM
Sbjct: 521 NKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEM 580

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K +GY P+    LHDVE   K+ LL +HSEKLA+ FG+M +  G+PI++ KNLR+C DCH
Sbjct: 581 KMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCH 640

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              KF S I GR+ IVRD NRFHHF  G CSC D+W
Sbjct: 641 WAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 183/407 (44%), Gaps = 52/407 (12%)

Query: 74  LINFYSKCGLISGARKVFD----------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
           LI  YSK G +  AR +FD          + P   +   NT++ +Y   GR  EA+ L+I
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLC--NTMLRAYANAGRSYEAIDLYI 121

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M R G    + FT   VL  CA++      + +H   ++     ++FV  AL+D+YAKC
Sbjct: 122 YMQRMG-VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKC 180

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G I DA  VF+ M  R+ V W++M+  + Q E   +AL+LFR+ Q  G   ++ T  SV 
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVA 240

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            A   L                  G    A S              A  VF  +EE+N +
Sbjct: 241 SAVGQL------------------GDGRMAISR-------------ARLVFDRMEERNGI 269

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WN+M+SG++++ R  + + LF +MQ +   PN  T + ++SACS++G    G+   + +
Sbjct: 270 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 329

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF-DATASMWGSLLA--SCRNYRN 420
           +     +      + M D+  + G +  A ++  N    +   S W  L++      +  
Sbjct: 330 ISSKMDIDTTLRNAIM-DMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 388

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
             L   +  Q+ G+EP    N +  ++I +A      +   RK   D
Sbjct: 389 EALELFSRMQVEGVEP----NDITFTSILSACSHAGLIDEGRKCFAD 431


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 323/576 (56%), Gaps = 43/576 (7%)

Query: 66  NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
            D +    +I+  +K GL+  AR++    P R +V+W  +I  Y+  GR  EAV  F +M
Sbjct: 169 KDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM 228

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           L +G  P  E TV  +L AC   +D+ F C  LH+      M  +  +  AL+D+YAKCG
Sbjct: 229 LSDGIAP-DEVTVIGMLSACGQLKDLNFGC-SLHMLVGDKRMLMSDKLVVALIDMYAKCG 286

Query: 185 LISDASRVFES--------------------------------MPERNEVTWSSMVAGFV 212
               A  VF++                                M + + +T++S++ G++
Sbjct: 287 DTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYI 346

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
                 EAL+LF + +  GL  + FT+  ++ A A L AL QG+ +HA + +     +++
Sbjct: 347 HGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVY 406

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L+DMY KCG V +A   F  +  ++V  W+ MI G + +      +  F  M+  G
Sbjct: 407 LGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDG 466

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            H N  TYI+VL+ACSH  ++++G+ YFD M   HN+ P + HY CMID+LGR+GL+ EA
Sbjct: 467 FHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEA 526

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            DL+  MP    A +W S+L++CR ++N++LA+ AA  L  +EP     ++ + NIY  +
Sbjct: 527 MDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDS 586

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
           R+WE+ ++ R+L+    VKK    S + + G+        R+HP+IAEI   +E++   +
Sbjct: 587 RQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRL 646

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K  GY P T     DV++  K++ L+ HSEKLA+ FGL+ L P +P+ I+KNLR+C DCH
Sbjct: 647 KSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCH 706

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S +K  SR+  RE IVRD +RFHHF  G CSC DFW
Sbjct: 707 SAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 126/264 (47%), Gaps = 33/264 (12%)

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           A   A  ++V   T ++   AK GL+ DA R+    P RN VTW+ +++G+ +     EA
Sbjct: 162 AFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEA 221

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           +  F      G+  ++ T+  ++ AC  L  L  G  +H ++       +     +L+DM
Sbjct: 222 VDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDM 281

Query: 281 YAKCG----------------------CVVDAY----------FVFSGIEEKNVVLWNTM 308
           YAKCG                       ++D Y           +F  +E+ +V+ +N++
Sbjct: 282 YAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSL 341

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+G+    R  E ++LF KM++ GL  +  T + +L+A + +G + +G++     ++Q  
Sbjct: 342 ITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRA-LHACIEQRL 400

Query: 369 VLPNVFHYSCMIDILGRAGLIHEA 392
           V  +V+  + ++D+  + G + EA
Sbjct: 401 VERDVYLGTALLDMYMKCGRVEEA 424



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 15/183 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L + A   A  +G+  HA I    +  D      L++ Y KCG +  A   F +M
Sbjct: 372 TMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQM 431

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK------ 148
             R + +W+ +IG    NG  + A+  F  M  +G    S  T  +VL AC+        
Sbjct: 432 SVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANS-VTYIAVLTACSHSCLLDEG 490

Query: 149 RDVF-ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
           R  F E + LH   ++  ++        ++D+  + GL+ +A  + ++MP + N V W+S
Sbjct: 491 RLYFDEMRLLH--NIRPQIEHY----GCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWAS 544

Query: 207 MVA 209
           +++
Sbjct: 545 ILS 547


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 336/603 (55%), Gaps = 54/603 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI----LINFYSKCGLISGARKV 90
           TL + L +C+       GK  HA ++   +NND + ++     L++ Y  C      R V
Sbjct: 289 TLASVLPACSHLEMLGCGKEIHAFVL---MNNDLIENSFVGCALVDMYCNCKQPEKGRLV 345

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE-GKTPYSEFTVSSVLCACAAKR 149
           FD M +R I  WN +I  Y  N  + EA+ LF+ M+ E G +P S  T+SSVL AC    
Sbjct: 346 FDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNS-VTLSSVLPACVRCE 404

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
              + + +H   +K   +++ +V  AL+D+Y++ G I  A  +F SM  ++ V+W++M+ 
Sbjct: 405 SFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMIT 464

Query: 210 GFVQNELYEEALILF---RRAQV---------------LGLEYNQFTISSVICACAGLAA 251
           G+V    +++AL L    +R Q                  L+ N  T+ +V+  CA LAA
Sbjct: 465 GYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAA 524

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L +GK++HA   K     ++   S+LVDMYAKCGC+  +  VF  +  +NV+ WN +I  
Sbjct: 525 LGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMA 584

Query: 312 FSRHARSVEVMILFEKMQQAG-----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           +  H +  E + LF +M + G     + PNE TYI++ ++ SH GMV++G + F  M  +
Sbjct: 585 YGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAK 644

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRNYRNLELAE 425
           H + P   HY+C++D+LGR+G I EAY+LI  MP +      W SLL +C+ ++NLE+ E
Sbjct: 645 HGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGE 704

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE----- 480
           IAAK LF ++P          N+     +   + R    +++  V+KE   SW+E     
Sbjct: 705 IAAKNLFVLDP----------NVLDYGTKQSMLGRK---MKEKGVRKEPGCSWIEHGDEV 751

Query: 481 ---IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
              + G  +HP+  E++  LE L   MKK GY P+T   LH+V +  K+ +L  HSE+LA
Sbjct: 752 HKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLA 811

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+   PG  IR+ KNLR+C DCH   KF S+I  RE I+RD+ RFHHF NG+CSC 
Sbjct: 812 IAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCG 871

Query: 598 DFW 600
           D+W
Sbjct: 872 DYW 874



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 159/299 (53%), Gaps = 5/299 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA +   G    T   N L+N Y KCG I  AR+VFDE+  R  VSWN++I +   
Sbjct: 104 GKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACR 163

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK-RDVFECKQLHVFALKAAMDRNV 170
               + AV LF  ML E   P S FT+ SV  AC+     +   KQ+H F L+   D   
Sbjct: 164 FEEWELAVHLFRLMLLENVGPTS-FTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRT 221

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           F   AL+ +YAK G + +A  +F+   +++ V+W+++++   QN+ +EEAL+        
Sbjct: 222 FTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQS 281

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
           G+  N  T++SV+ AC+ L  L  GK++HA VL       N F   +LVDMY  C     
Sbjct: 282 GVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEK 341

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSAC 347
              VF G+  + + +WN MI+G+ R+    E + LF +M  + GL PN  T  SVL AC
Sbjct: 342 GRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPAC 400



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 182/345 (52%), Gaps = 11/345 (3%)

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +A++ + NM+  G  P   F   +VL A A  +D+   KQLH    K        V  +
Sbjct: 67  HQAISTYTNMVTAG-VPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNS 125

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++Y KCG I  A RVF+ +  R++V+W+SM+    + E +E A+ LFR   +  +   
Sbjct: 126 LVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT 185

Query: 236 QFTISSVICACAGLA-ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
            FT+ SV  AC+ L   L+ GKQVHA + + G     F  ++LV MYAK G V +A  +F
Sbjct: 186 SFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLF 244

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
              ++K++V WNT+IS  S++ R  E ++    M Q+G+ PN  T  SVL ACSH+ M+ 
Sbjct: 245 DVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLG 304

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
            GK     ++  ++++ N F    ++D+        E   L+ +  F  T ++W +++A 
Sbjct: 305 CGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQ-PEKGRLVFDGMFRRTIAVWNAMIAG 363

Query: 415 -CRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAANRRWE 456
             RN  + E  E+  + +F  G+ P    N + LS++  A  R E
Sbjct: 364 YVRNEFDYEAIELFVEMVFELGLSP----NSVTLSSVLPACVRCE 404



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 4/209 (1%)

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           + +A+  +      G+  + F   +V+ A AG+  L  GKQ+HA + K G        +S
Sbjct: 66  FHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNS 125

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           LV+MY KCG +  A  VF  I  ++ V WN+MI+   R       + LF  M    + P 
Sbjct: 126 LVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT 185

Query: 337 EQTYISVLSACSH-IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
             T +SV  ACS+ I  +  GK     +++  +     F  + ++ +  + G ++EA  L
Sbjct: 186 SFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDW--RTFTNNALVTMYAKLGRVYEAKTL 243

Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELA 424
             ++  D     W ++++S       E A
Sbjct: 244 -FDVFDDKDLVSWNTIISSLSQNDRFEEA 271


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/561 (35%), Positives = 325/561 (57%), Gaps = 48/561 (8%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  H  I+   LN D      L++ Y K   +  A+ V      + + +WN++I  Y+ 
Sbjct: 37  GKEIHGYIMRSNLNYDVYVCTSLVDMYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSF 96

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
            G+  EAV L   M+ EG TP                                    ++ 
Sbjct: 97  KGQFGEAVKLLNQMVEEGITP------------------------------------DLV 120

Query: 172 VGTALLDVYAKCGLISDA----SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
               L+  Y+  G I +A    +R+  S    N V+W+++++G  QNE Y +AL +F + 
Sbjct: 121 TWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQM 180

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           Q   ++ N  TI S++CACAG + L +G+++H    K GF  +++ A++L+DMY++ G +
Sbjct: 181 QAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKL 240

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             AY VF+ I+EK +  WN M+ G++ H+   EVMIL++KM++  + P+  T+ ++LSAC
Sbjct: 241 KVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSAC 300

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
            + G+V++G  YFD M + +N++P + HY CM+D+LG++G + EA   I  MP    AS+
Sbjct: 301 KNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASI 360

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           WG+LLASC+ ++N++LAEIAA++LF MEP+N+ N++L+ N+Y++  RW  V R +  +  
Sbjct: 361 WGALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTV 420

Query: 468 SEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             +K     SW ++           R HP   EIY +L +L+ E++KLGY P+      +
Sbjct: 421 LAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQN 480

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           ++D+ K+++L+ H+EKLA+ +G+M +  G PIRI+KN RIC DCH+  K+ S +  RE +
Sbjct: 481 IDDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLVRKREIL 540

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           +RD  RFHHF NG C+C D W
Sbjct: 541 LRDGGRFHHFKNGKCACNDRW 561



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 1/161 (0%)

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            L  FR    LG + +  +++S + A   L     GK++H  + ++    +++  +SLVD
Sbjct: 2   VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY K  C+  A  V    + KNV  WN++ISG+S   +  E + L  +M + G+ P+  T
Sbjct: 62  MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
           +  ++S  S  G +++  +  +  +K   + PNV  ++ +I
Sbjct: 122 WNGLVSGYSMQGRIDEALTIIN-RIKSSGITPNVVSWTALI 161



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           S + + +   N+T + +L   L +CA      +G+  H   + +G  +D   +  LI+ Y
Sbjct: 178 SQMQAENVKPNSTTICSL---LCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMY 234

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
           S+ G +  A  VF+++ ++ +  WN ++  Y  +   +E + L+  M RE        T 
Sbjct: 235 SEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKM-RERHIRPDAITF 293

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT----ALLDVYAKCGLISDASRVFE 194
           +++L AC     V E  +   +      D N+         ++D+  K G + +AS   E
Sbjct: 294 TALLSACKNSGLVDEGWK---YFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIE 350

Query: 195 SMPERNEVT-WSSMVA 209
           +MP + + + W +++A
Sbjct: 351 TMPIKPDASIWGALLA 366


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/579 (36%), Positives = 324/579 (55%), Gaps = 47/579 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+     V G+  H     +GL++     N L++ Y KCG +S AR V DEM
Sbjct: 142 TFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSWN+++  Y  N R  +A+ +   M    K  +   T++S+L A          
Sbjct: 202 SRRDVVSWNSLVVGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPA---------- 250

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                  +      NV        +Y K         +F  M +++ V+W+ M+  +++N
Sbjct: 251 -------VSNTTTENV--------MYVK--------DMFFKMGKKSLVSWNVMIGVYMKN 287

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +  EA+ L+ R +  G E +  +I+SV+ AC   +AL  GK++H  + +     N+   
Sbjct: 288 AMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCGC+  A  VF  ++ ++VV W  MIS +    R  + + LF K+Q +GL 
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLV 407

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+   +++ L+ACSH G++E+G+S F LM   + + P + H +CM+D+LGRAG + EAY 
Sbjct: 408 PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYR 467

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +M  +    +WG+LL +CR + + ++  +AA +LF + P+ +G ++LLSNIYA   R
Sbjct: 468 FIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGR 527

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WEEV   R +++   +KK    S VE+         G R+HP+  EIY +L+ LV++MK+
Sbjct: 528 WEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKE 587

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL-----CPGVPIRIMKNLRICG 561
           LGY P++E  LHDVE+  K+  L  HSEKLA+ F LM            IRI KNLRICG
Sbjct: 588 LGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICG 647

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH   K  S+I  RE I+RD NRFH F  G CSC D+W
Sbjct: 648 DCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 179/362 (49%), Gaps = 36/362 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           +  H++II   L  ++     L+  Y+    ++ ARKVFDE+P+R ++  N +I SY  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G   E V +F  M      P   +T   VL AC+    +   +++H  A K  +   +FV
Sbjct: 119 GFYGEGVKVFGTMCGCNVRP-DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           G  L+ +Y KCG +S+A  V + M  R+ V+W+S+V G+ QN+ +++AL + R  + + +
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
            ++  T++S++ A +                 T   + M+      DM+ K G       
Sbjct: 238 SHDAGTMASLLPAVS----------------NTTTENVMYVK----DMFFKMG------- 270

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
                 +K++V WN MI  + ++A  VE + L+ +M+  G  P+  +  SVL AC     
Sbjct: 271 ------KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +  GK      +++  ++PN+   + +ID+  + G + +A D+  NM      S W +++
Sbjct: 325 LSLGKKIHGY-IERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS-WTAMI 382

Query: 413 AS 414
           ++
Sbjct: 383 SA 384



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 15/304 (4%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   + +H   +   +  N  +G  L+  YA    ++ A +VF+ +PERN +  + M+ 
Sbjct: 54  DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +V N  Y E + +F       +  + +T   V+ AC+    ++ G+++H    K G  S
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            +F  + LV MY KCG + +A  V   +  ++VV WN+++ G++++ R  + + +  +M+
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233

Query: 330 QAGLHPNEQTYISVLSACSHIGM--VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
              +  +  T  S+L A S+     V   K  F  M K+  V  NV     MI +  +  
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNV-----MIGVYMKNA 288

Query: 388 LIHEAYDLILNMP---FDATASMWGSLLASCRNYRNLELAEIAAKQLFG-MEPDNAGNHL 443
           +  EA +L   M    F+  A    S+L +C +   L L     K++ G +E      +L
Sbjct: 289 MPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL----GKKIHGYIERKKLIPNL 344

Query: 444 LLSN 447
           LL N
Sbjct: 345 LLEN 348


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/571 (36%), Positives = 326/571 (57%), Gaps = 46/571 (8%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           +I  Y +   +  AR++ + M     V+WN +I  Y   G  +EA  L   M   G    
Sbjct: 214 IIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLG-IQL 272

Query: 134 SEFTVSSVLCACAAKRDVFEC-KQLHVFALKAAMDRN----VFVGTALLDVYAKCGLISD 188
            E+T +SV+ A A+   +F   +Q+H + L+  +  +    + V  AL+ +Y +CG + +
Sbjct: 273 DEYTYTSVISA-ASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVE 331

Query: 189 ASRVFESMPERNEV-------------------------------TWSSMVAGFVQNELY 217
           A RVF+ MP ++ V                               TW+ M++G  QN   
Sbjct: 332 ARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFG 391

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           EE L LF + ++ GLE   +  +  I +C+ L +L  G+Q+H+ + + G  S++   ++L
Sbjct: 392 EEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNAL 451

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MY++CG V  A  VF  +   + V WN MI+  ++H   V+ + L+EKM +  + P+ 
Sbjct: 452 ITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDR 511

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++++LSACSH G+V++G+ YFD M   + + P   HYS +ID+L RAG+  EA ++  
Sbjct: 512 ITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTE 571

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +MPF+  A +W +LLA C  + N+EL   AA +L  + P   G ++ LSN+YAA  +W+E
Sbjct: 572 SMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDE 631

Query: 458 VARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGY 509
           VAR RKL+R+  VKKE   SW+E++   +        HP +  +Y  LE+LV EM+KLGY
Sbjct: 632 VARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGY 691

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+T+  LHD+E  +K+  L  HSEKLA+ +G+M L  G  IR+ KNLRICGDCH+  K+
Sbjct: 692 VPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKY 751

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++  RE IVRD  RFHHF NG CSC ++W
Sbjct: 752 ISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 192/429 (44%), Gaps = 85/429 (19%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFIN 124
           D + +  +++ YS  G I  A ++F+  P   R  VS+N +I +++ +     A+ LF+ 
Sbjct: 61  DIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQ 120

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
           M R G  P   FT SSVL A +   D    C+QLH    K        V  AL+  Y  C
Sbjct: 121 MKRLGFVP-DPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSC 179

Query: 184 G---------LISDASRVFESMPE----------------RNE----------------- 201
                     L++ A ++F+  P                 RN+                 
Sbjct: 180 ASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIA 239

Query: 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
           V W++M++G+V    YEEA  L RR   LG++ +++T +SVI A +       G+QVHA 
Sbjct: 240 VAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAY 299

Query: 262 LCKTGF-GSNMFAAS---SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN----------- 306
           + +T    S  F  S   +L+ +Y +CG +V+A  VF  +  K++V WN           
Sbjct: 300 VLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARR 359

Query: 307 --------------------TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
                                MISG +++    E + LF +M+  GL P +  Y   +++
Sbjct: 360 IEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIAS 419

Query: 347 CSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA 405
           CS +G ++ G+     +++  H+   +V   + +I +  R GL+  A  + L MP+  + 
Sbjct: 420 CSVLGSLDNGQQLHSQIIQLGHDSSLSVG--NALITMYSRCGLVEAADTVFLTMPYVDSV 477

Query: 406 SMWGSLLAS 414
           S W +++A+
Sbjct: 478 S-WNAMIAA 485



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 145/320 (45%), Gaps = 45/320 (14%)

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTI------------------------ 105
            +N LI  Y++CG +  AR+VFD+MP + +VSWN I                        
Sbjct: 315 VNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRS 374

Query: 106 -------IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
                  I     NG  +E + LF  M  EG  P  ++  +  + +C+    +   +QLH
Sbjct: 375 LLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEP-CDYAYAGAIASCSVLGSLDNGQQLH 433

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
              ++   D ++ VG AL+ +Y++CGL+  A  VF +MP  + V+W++M+A   Q+    
Sbjct: 434 SQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGV 493

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL-CKTGFGSNMFAASSL 277
           +A+ L+ +     +  ++ T  +++ AC+    + +G+     +    G        S L
Sbjct: 494 QAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRL 553

Query: 278 VDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMI-----LFEKMQQA 331
           +D+  + G   +A  V   +  E    +W  +++G   H  ++E+ I     L E M Q 
Sbjct: 554 IDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHG-NMELGIQAADRLLELMPQ- 611

Query: 332 GLHPNEQTYISVLSACSHIG 351
                + TYIS+ +  + +G
Sbjct: 612 ----QDGTYISLSNMYAALG 627



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
             + SC+   +   G+  H++II +G ++     N LI  YS+CGL+  A  VF  MP  
Sbjct: 415 GAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV 474

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA------AKRDV 151
             VSWN +I +   +G   +A+ L+  ML+E   P    T  ++L AC+        R  
Sbjct: 475 DSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILP-DRITFLTILSACSHAGLVKEGRHY 533

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           F+  ++  + +    D      + L+D+  + G+ S+A  V ESMP E     W +++AG
Sbjct: 534 FDTMRV-CYGITPEEDHY----SRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAG 588



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 57/325 (17%)

Query: 154 CKQLHVFALKAAMDR----NVFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSM 207
           CK  ++   +   D+    ++   T +L  Y+  G I  A ++F + P   R+ V++++M
Sbjct: 42  CKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAM 101

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA-ALIQGKQVHAVLCKTG 266
           +  F  +     AL LF + + LG   + FT SSV+ A + +A      +Q+H  + K G
Sbjct: 102 ITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWG 161

Query: 267 FGSNMFAASSLVDMYAKCG-------CV-------------------------------- 287
             S     ++L+  Y  C        CV                                
Sbjct: 162 ALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRN 221

Query: 288 ---VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
              V A  +  G+ +   V WN MISG+       E   L  +M   G+  +E TY SV+
Sbjct: 222 DDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVI 281

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-----SCMIDILGRAGLIHEAYDLILNM 399
           SA S+ G+   G+     +++   V+    H+     + +I +  R G + EA  +   M
Sbjct: 282 SAASNAGLFNIGRQVHAYVLR--TVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKM 339

Query: 400 PFDATASMWGSLLASCRNYRNLELA 424
           P     S W ++L+ C N R +E A
Sbjct: 340 PVKDLVS-WNAILSGCVNARRIEEA 363


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/511 (39%), Positives = 297/511 (58%), Gaps = 42/511 (8%)

Query: 132 PYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
           P+  F  S++  +  A R +        V  L    DR+ FV  +L+  Y  CG +  A 
Sbjct: 138 PFLPFAFSTLAKSATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAAR 197

Query: 191 RVFESM-------------------------------PERNEVTWSSMVAGFVQNELYEE 219
           +VF+ M                               P ++ V W++MV G+ QN +  +
Sbjct: 198 KVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVK 257

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL +F R   LG+  ++ +++  I ACA L AL +   V  +  +TGFG+N+   S LVD
Sbjct: 258 ALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVD 317

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQ 338
           MYAKCG + +A  VF G++EKNV  +++MI+G + H R+ E + LF++M  +A + PN  
Sbjct: 318 MYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHV 377

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T+I VL+ACSH GMV +G+ YF  M  ++ ++P+  HY+CM+D+LGRAGL+ EA DL+ +
Sbjct: 378 TFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRS 437

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           M       +WG+LL +CR +   E+A++ A+ LF +EP++ GN++LLSNI A+  +WEEV
Sbjct: 438 MSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEV 497

Query: 459 ARARKLIRDSEVKKEKSKSWVE---------IKGKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           ++ R L+R   +KK+ + S  E           G   HPR  EI   L +LV ++K  GY
Sbjct: 498 SKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGY 557

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P     ++DV D  K+ LL+ HSEKLAL+FGL+ L  G  IRI+KNLRIC DCH FM+ 
Sbjct: 558 VPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMQL 617

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            SR+   E IVRD  RFHHF NG CSC  FW
Sbjct: 618 VSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 161/369 (43%), Gaps = 49/369 (13%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G +      N LI  Y  CG +  ARKVFDEM ++ ++SW +I+ +YT +G  + A  +F
Sbjct: 172 GFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVF 231

Query: 123 ------------------------------INMLREGKTPYSEFTVSSVLCACAAKRDVF 152
                                          + + E      E +++  + ACA    + 
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
               +   A +     NV VG+ L+D+YAKCGLI +AS+VF  M E+N  T+SSM+AG  
Sbjct: 292 RAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLA 351

Query: 213 QNELYEEALILFR----RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL-CKTGF 267
            +    EA+ LF+    RA V   E N  T   V+ AC+    + +G+   A +  K G 
Sbjct: 352 SHGRASEAIALFKEMVNRANV---EPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGI 408

Query: 268 GSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             +    + +VD+  + G V +A   V S     +  +W  ++     H +S    ++ E
Sbjct: 409 MPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAE 468

Query: 327 KMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQH-NVLPNVFHYSCMIDILG 384
            + +  L P     Y+ + +  +  G  E+      LM KQ     P V  +       G
Sbjct: 469 HLFK--LEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFE------G 520

Query: 385 RAGLIHEAY 393
           R GL+H+ +
Sbjct: 521 RDGLVHQFF 529



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L   + +CA+  A  R           G  N+ +  + L++ Y+KCGLI  A KVF  M
Sbjct: 276 SLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGM 335

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ + +++++I    ++GR  EA+ALF  M+       +  T   VL AC+    V E 
Sbjct: 336 QEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEG 395

Query: 155 KQLHVFALKAAMDRNVFVGTA-----LLDVYAKCGLISDASRVFESM 196
           +    +      D+   + +A     ++D+  + GL+ +A  +  SM
Sbjct: 396 R----YYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSM 438


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/586 (35%), Positives = 329/586 (56%), Gaps = 41/586 (6%)

Query: 56  HAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           HA+ I  G+ +D   ++ +++F   S  G I  AR +F  + +  I   NT+I +Y  + 
Sbjct: 55  HAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSP 114

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
              +AV  +  M           T   +L AC+    +   + +H    K      V V 
Sbjct: 115 NPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVS 174

Query: 174 TALLDVYAKCGLISDAS-------------------------------RVFESMPERNEV 202
             L+ +YA CGLI  A                                R+FE+MP+R+ V
Sbjct: 175 NFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVV 234

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +WS M+ G+VQ   ++E L LF+      +E N+  + + + ACA L A+ QG+ +   +
Sbjct: 235 SWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYM 294

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            +      +   ++L+DMY+KCG V  A  VF  ++EKNV+ W+ MI+G + + +  + +
Sbjct: 295 ERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDAL 354

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LF +M+  G+ PNE T+I +L+ACSH  +V++G S+F  M   + + PN  H+ CM+D+
Sbjct: 355 NLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDL 414

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
            GRAG++ +A  +I +MPF   +++WG+LL +CR + + EL E   K+L  ++P++ G +
Sbjct: 415 YGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRY 474

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIY 494
           +LLSNIYAA  RW+ VA  R+++R+ +V K    S+++        + G  +HP++  IY
Sbjct: 475 VLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIY 534

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIM 554
           +KL ++ +E+K  GYKP+T   L D+++  K+  L HHSEKLA+ FGL+   PG  IRI 
Sbjct: 535 AKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRIT 594

Query: 555 KNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KNLR+C DCHS  K  S+I  RE IVRD  RFHHF +GSCSC DFW
Sbjct: 595 KNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 150/320 (46%), Gaps = 34/320 (10%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS------ 85
           ++ T    L++C+   +   G+  H+ +  +G +++   SN L+  Y+ CGLI       
Sbjct: 135 DVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVF 194

Query: 86  -------------------------GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
                                     AR++F+ MP R +VSW+ +I  Y    R +E + 
Sbjct: 195 DRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLG 254

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           LF +M+ E   P +E  + + L ACA    + + + +  +  +  +   V +GTAL+D+Y
Sbjct: 255 LFQDMMGEKIEP-NESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMY 313

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           +KCG +  A  VF  M E+N + WS+M+ G   N   ++AL LF + ++ G++ N+ T  
Sbjct: 314 SKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFI 373

Query: 241 SVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            ++ AC+    + +G    H++    G   N      +VD+Y + G +  A  V   +  
Sbjct: 374 GILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPF 433

Query: 300 K-NVVLWNTMISGFSRHARS 318
           K N  +W  +++    H  +
Sbjct: 434 KPNSAIWGALLNACRIHGDT 453



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA--KCGCVVDAYFV 293
           ++ I   + +C  L  L    Q+HA    TG  S+ F AS ++   A    G +  A F+
Sbjct: 35  KYPILRHLSSCKTLKDL---TQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFL 91

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGM 352
           F  I + ++ + NT+I  ++     ++ ++ + +M ++  + P+  T+  +L ACS I  
Sbjct: 92  FYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPS 151

Query: 353 VEKGKS 358
           +  G++
Sbjct: 152 LRLGEA 157


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 321/574 (55%), Gaps = 49/574 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++C+  +A   G+  H  ++  G+ +D    +  I  Y+  G +  ARK+F   
Sbjct: 134 TYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS- 192

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +V WNT+I  Y   G  + A  LF  M      P                      
Sbjct: 193 GESDVVCWNTMIDGYLKCGVLEAAKGLFAQM------PV--------------------- 225

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                        +N+     +++  AK G + DA ++F+ M ER+E++WSSMV G++  
Sbjct: 226 -------------KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISA 272

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             Y+EAL +F++ Q       +F +SSV+ AC+ + A+ QG+ VHA L +     +    
Sbjct: 273 GRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLG 332

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCG +   + VF  ++E+ +  WN MI G + H R+ + + LF K+Q+  + 
Sbjct: 333 TALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMK 392

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T + VL+AC+H G V+KG   F  M + + V P + HY CM+D+LGR+GL  EA D
Sbjct: 393 PNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAED 452

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI +MP    A++WG+LL +CR + N +LAE   K L  +EP N+G ++LLSNIYA   R
Sbjct: 453 LINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGR 512

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           +++V++ RKL+++  +K     S V++         G  +HP++ EIY KL+ + E ++ 
Sbjct: 513 FDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQM 572

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P+T   L D+++  K+  + +HSEKLA+ FGL+   PG  I I+KNLR+C DCHS 
Sbjct: 573 AGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSA 632

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S+I  RE IVRD  R+HHF NG+CSC DFW
Sbjct: 633 TKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 18/268 (6%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFVQ 213
           QLH   L++   ++ +V  ALL  YA         A +VF S+P  N   W+ ++ G ++
Sbjct: 51  QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLE 110

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N    +A+  + R  V+    N+FT  ++  AC+   A+ +G+Q+H  + K G GS++  
Sbjct: 111 NNKLFKAIYFYGR-MVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 274 ASSLVDMYAKCGCVVDAYFVF-SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
            S+ + MYA  G + DA  +F SG  E +VV WNTMI G+ +         LF +M    
Sbjct: 170 KSAGIQMYASFGRLEDARKMFYSG--ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVK- 226

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              N  ++  +++  +  G +   +  FD M ++  +      +S M+D    AG   EA
Sbjct: 227 ---NIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI-----SWSSMVDGYISAGRYKEA 278

Query: 393 YDLILNMPFDATAS---MWGSLLASCRN 417
            ++   M  + T     +  S+LA+C N
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSN 306


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 336/605 (55%), Gaps = 45/605 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD------- 92
           L +CA       G+  H+ ++  GL ++ + SN L+N Y KC  +  A KVFD       
Sbjct: 17  LDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDV 76

Query: 93  ------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
                                    MP++  VSWN +I +   N + Q+A+ LF  M  E
Sbjct: 77  VSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELE 136

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLIS 187
           G    +EFT+ S+L AC    D+   +Q+H  A       N   VG +++++YA+CG + 
Sbjct: 137 GLRS-NEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLL 195

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNE--LYEEALILFRRAQVLGLEYNQFTISSVICA 245
           D  + F+S+ E+  V WS M+A + Q++      A   F+  +  G++  + T  S + A
Sbjct: 196 DTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDA 255

Query: 246 CAGLAALIQGKQVHAVLCKTGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           CA +A L  G+ +H     +GF  +++   +++++MY KCG   DA  VF  + EK ++ 
Sbjct: 256 CAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLIS 315

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           WN++I  ++ +  ++E +   ++M   G  P+  T +S+L   SH G++E+G  +F   +
Sbjct: 316 WNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSI 375

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF-DATASMWGSLLASCRNYRNLEL 423
           + H + P+     C++D+L R G +  A +LIL  P   A    W +LLA+C++Y + + 
Sbjct: 376 QDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQR 435

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--- 480
               A+++F +EP ++G+ ++L+N+YA+  RW + +R RK++    VKKE   SW+E   
Sbjct: 436 GIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSG 495

Query: 481 -----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                I G+  HP+I EI  +LEKL   M++ GY P+T + +HDVE+  K+E+L  HSE+
Sbjct: 496 SVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSER 555

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ FGLM   PG  IR++KNLR+C DCH+  K  S + GRE +VRD +RFHHF +G CS
Sbjct: 556 LAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCS 615

Query: 596 CWDFW 600
           C DFW
Sbjct: 616 CGDFW 620


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/587 (37%), Positives = 332/587 (56%), Gaps = 26/587 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSN-----ILINFYSKCGLISGARK 89
           T  + L +C+R      G+  HA +I     +D L +N      L++ Y+    +  AR+
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVI----KDDELAANSFVASALVDMYATHEQVGKARQ 176

Query: 90  VFDEMPQ--RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           VFD +P   + +  WN +I  Y   G ++EA+ LF  M  E      E T++SVL ACA 
Sbjct: 177 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA- 235

Query: 148 KRDVFECKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + + F  K+ +H + +K  M  N FV  AL+D+YA+ G    A R+F  +   + V+W++
Sbjct: 236 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 295

Query: 207 MVAGFVQNELYEEALILFRRAQVL---GLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           ++ G V      +A  L R  Q L   G+  N  T+ +++  CA LAA  +GK++H    
Sbjct: 296 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 355

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +    +++   S+LVDMYAKCGC+  +  VF  +  +N + WN +I  +  H    E  +
Sbjct: 356 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 415

Query: 324 LFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
           LF++M  +G   PNE T+++ L+ACSH GMV++G   F  M + H V P     +C++DI
Sbjct: 416 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 475

Query: 383 LGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           LGRAG + EAY ++ +M   +   S W ++L +CR +RN+ L EIA ++L  +EP+ A +
Sbjct: 476 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 535

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEI 493
           ++LL NIY+A  +W   A  R  +R   V KE   SW+E+ G        +  HP   E+
Sbjct: 536 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 595

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           ++ +E L  EM   GY P+T   LHD++D  K  +L  HSEKLA+ FGL+   PG  IR+
Sbjct: 596 HAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRV 655

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            KNLR+C DCH   KF S++ GRE ++RD+ RFHHF NG CSC D+W
Sbjct: 656 AKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 186/368 (50%), Gaps = 13/368 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGAR 88
           T +S L+A     A   A   G+  HA  +  GL   +     N L++ Y++ GL++ A+
Sbjct: 12  TLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQ 71

Query: 89  KVF-DEMPQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           ++F    P R  +V+WNT++     +G   EAV    +M+  G  P    T +S L AC+
Sbjct: 72  RLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRP-DGVTFASALPACS 130

Query: 147 AKRDVFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV--T 203
               +   +++H + +K   +  N FV +AL+D+YA    +  A +VF+ +P+  +    
Sbjct: 131 RLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGM 190

Query: 204 WSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           W++M+ G+ Q  + EEAL LF R +   G    + T++SV+ ACA   A    + VH  +
Sbjct: 191 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 250

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G   N F  ++L+DMYA+ G    A  +F+ ++  +VV WNT+I+G        +  
Sbjct: 251 VKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAF 310

Query: 323 ILFEKMQQ---AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
            L  +MQQ    G+ PN  T +++L  C+ +    +GK      V+ H +  +V   S +
Sbjct: 311 QLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSAL 369

Query: 380 IDILGRAG 387
           +D+  + G
Sbjct: 370 VDMYAKCG 377



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 148/288 (51%), Gaps = 6/288 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ + L +CAR  A    +  H  ++  G+  +    N L++ Y++ G    AR++F  
Sbjct: 225 TTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAM 284

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINM--LREGKTPYSEFTVSSVLCACAAKRDV 151
           +    +VSWNT+I      G   +A  L   M  L EG    +  T+ ++L  CA     
Sbjct: 285 VDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAP 344

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              K++H +A++ A+D +V VG+AL+D+YAKCG ++ +  VF+ +P RN +TW+ ++  +
Sbjct: 345 ARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAY 404

Query: 212 VQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGS 269
             + L  EA +LF R    G    N+ T  + + AC+    + +G Q+ HA+    G   
Sbjct: 405 GMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEP 464

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRH 315
                + +VD+  + G + +AY + + +E  E+ V  W+TM+     H
Sbjct: 465 TPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLH 512



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 151/299 (50%), Gaps = 14/299 (4%)

Query: 129 GKTPYSEFTVSSVLCAC----AAKRDVFECKQLHVFALKAAM--DRNVFVGTALLDVYAK 182
           G  P + FT+ SVL A     AA   V   ++ H FALK  +      F   ALL +YA+
Sbjct: 4   GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 63

Query: 183 CGLISDASRVFE-SMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
            GL++DA R+F  + P R +V TW++MV+  VQ+ +++EA+        LG+  +  T +
Sbjct: 64  LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 123

Query: 241 SVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           S + AC+ L  L  G+++HA + K     +N F AS+LVDMYA    V  A  VF  + +
Sbjct: 124 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 183

Query: 300 --KNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEKG 356
             K + +WN MI G+++     E + LF +M+ +AG  P E T  SVL AC+       G
Sbjct: 184 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAG 242

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           K      V +  +  N F  + ++D+  R G    A  +   +      S W +L+  C
Sbjct: 243 KEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVS-WNTLITGC 300


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 332/560 (59%), Gaps = 13/560 (2%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYS---KCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           K   A  I   L +D      LINF +       +  A  +FD++  + I+ +N +   Y
Sbjct: 46  KQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGY 105

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +     A +LF  +L  G  P  ++T SS+L ACA+ + + E   LH FA+K  ++ N
Sbjct: 106 ARSNSPYLAFSLFGELLCSGLLP-DDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHN 164

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           +++   L+++YA+C  ++ A  VF+ M +   V++++++ G+ ++    EAL LFR  Q 
Sbjct: 165 IYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQA 224

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
             +E    T+ SVI +CA L AL  GK +H  + K GF   +   ++L+DM+AKCG + D
Sbjct: 225 SNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTD 284

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  +F G+  ++   W+ MI  F+ H   ++ + +FE+M++ G+ P+E T++ +L ACSH
Sbjct: 285 AISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSH 344

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+VE+G+ YF  M K + + P + HY CM+D+LGRAG + EAY+ +  +   AT  +W 
Sbjct: 345 AGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWR 404

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL++C  + N+E+A+   +++F ++  + G++++LSN+YA   RWE+V   RKL++D  
Sbjct: 405 TLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRG 464

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DV 520
           V K    S VE+         G   H    E+   L++L++E+K +GY P+T    H D+
Sbjct: 465 VVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADM 524

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           E+  K+ +L +HSEKLA+ FGL+   PG  IR+ KNLRICGDCH+  K  S I GR+ ++
Sbjct: 525 EEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVI 584

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD+ RFH F +G CSC DFW
Sbjct: 585 RDVQRFHRFEDGKCSCGDFW 604



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 3/284 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++CA  +A   G   H   + +GLN++      LIN Y++C  ++ AR VFDEM
Sbjct: 132 TFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEM 191

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            Q CIVS+N II  Y  + +  EA++LF  +      P ++ T+ SV+ +CA    +   
Sbjct: 192 EQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEP-TDVTMLSVIMSCALLGALDLG 250

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H +  K   D+ V V TAL+D++AKCG ++DA  +FE M  R+   WS+M+  F  +
Sbjct: 251 KWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATH 310

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
               +A+ +F   +  G+  ++ T   ++ AC+    + QG+     + KT G    +  
Sbjct: 311 GDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKH 370

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
              +VD+  + G + +AY     +E K   +LW T++S  S H 
Sbjct: 371 YGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHG 414


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/607 (34%), Positives = 337/607 (55%), Gaps = 59/607 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGL--ISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA ++  G  +D   +  ++   +      I  A  VFD++P+R   +WNT+I +  
Sbjct: 32  KQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALA 91

Query: 111 -TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
            T  R  +A+ +F  ML E     ++FT  SVL ACA    + E KQ+H   LK  +  +
Sbjct: 92  ETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDD 151

Query: 170 VFVGTALLDVYAKCGLISDAS--------------------------------------- 190
            FV T LL +Y  CG + DA+                                       
Sbjct: 152 EFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYAR 211

Query: 191 --------RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISS 241
                    +F+ M +R+ V+W+ M++G+ QN  Y+EA+ +F R   +G +  N+ T+ S
Sbjct: 212 VGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVS 271

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           V+ A + L  L  GK VH    K     +    S+LVDMYAKCG +  A  VF  + + N
Sbjct: 272 VLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNN 331

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           V+ WN +I G + H ++ ++     +M++ G+ P++ TYI++LSACSH G+V++G+S+F+
Sbjct: 332 VITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFN 391

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            MV    + P + HY CM+D+LGRAG + EA +LILNMP      +W +LL + + ++N+
Sbjct: 392 DMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNI 451

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           ++   AA+ L  M P ++G ++ LSN+YA++  W+ VA  R +++D +++K+   SW+EI
Sbjct: 452 KIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEI 511

Query: 482 KG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
            G          +H R  +I+S LE++  ++   G+ P+T   L  +++  K+ +L +HS
Sbjct: 512 DGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHS 571

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EK+A+ FGL+   P  P+ I+KNLRIC DCHS MK  S++  R+ ++RD  RFHHF +GS
Sbjct: 572 EKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGS 631

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 632 CSCMDYW 638



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 155/324 (47%), Gaps = 61/324 (18%)

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNE 201
           AC + R   E KQ+H F +K     +  + T +L + A      I  A  VF+ +PERN 
Sbjct: 24  ACKSMR---ELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNC 80

Query: 202 VTWSSMVAGFVQ-NELYEEALILFRRAQVLG---LEYNQFTISSVICACAGLAALIQGKQ 257
             W++++    +  + + +AL++F   Q+L    +E NQFT  SV+ ACA +A L +GKQ
Sbjct: 81  FAWNTVIRALAETQDRHLDALLVF--CQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF----SGIEE-------------- 299
           VH +L K G   + F  ++L+ MY  CG + DA  +F     G+++              
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFN 198

Query: 300 -----------------------------KNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
                                        ++VV WN MISG++++    E + +F +M Q
Sbjct: 199 VVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQ 258

Query: 331 AG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            G + PN  T +SVL A S +G++E GK +  L  +++ +  +    S ++D+  + G I
Sbjct: 259 MGDVLPNRVTLVSVLPAISRLGVLELGK-WVHLYAEKNKIRIDDVLGSALVDMYAKCGSI 317

Query: 390 HEAYDLILNMPFDATASMWGSLLA 413
            +A  +   +P +   + W +++ 
Sbjct: 318 EKAIQVFERLPQNNVIT-WNAVIG 340



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 14/202 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L + +R      GK  H       +  D +  + L++ Y+KCG I  A +VF+ +
Sbjct: 268 TLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERL 327

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           PQ  +++WN +IG    +G+  +       M + G +P S+ T  ++L AC+    V E 
Sbjct: 328 PQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISP-SDVTYIAILSACSHAGLVDEG 386

Query: 155 KQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMV 208
           +      ++   LK  ++        ++D+  + G + +A  +  +MP + ++V W +++
Sbjct: 387 RSFFNDMVNSVGLKPKIEHY----GCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALL 442

Query: 209 AGFVQNELYEEALILFRRAQVL 230
                +++++   I  R A+VL
Sbjct: 443 GA---SKMHKNIKIGMRAAEVL 461


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/591 (34%), Positives = 325/591 (54%), Gaps = 44/591 (7%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF----YSKCGLISGARKVFDEMPQRCIVSWNTIIGS 108
           K+ HA +I   +  D   ++ LI F     S   LI  A ++F ++    +  +N +I  
Sbjct: 34  KIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRG 93

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
           ++ +    +A   ++   R+G  P    T   ++ +C     +    Q H   +K   ++
Sbjct: 94  HSGSKNPDQAFHFYVQSQRQGLLP-DNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEK 152

Query: 169 NVFVGTALLDVYA-------------------------------KCGLISDASRVFESMP 197
           +V+V  +L+ +YA                               KCG +  A ++F+ MP
Sbjct: 153 DVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMP 212

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           E+N VTWS+M++G+ QN  +++A+ LF+  Q  G+  N+  + SVI +CA L AL  G++
Sbjct: 213 EKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGER 272

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
            H  + K G   N+   ++LVDMYA+CG +  A +VF  + E++ + W  +I+G + H  
Sbjct: 273 AHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGY 332

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           S   +  F  M +AGL P + T+ +VLSACSH G+VE+G   F+ M + H V P + HY 
Sbjct: 333 SERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYG 392

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437
           CM+D+LGRAG + EA   +L MP    A +WG+LL +CR ++N E+ E   K L  + P 
Sbjct: 393 CMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQ 452

Query: 438 NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPR 489
           ++G ++LLSNIYA  + WE+V   R++++   +KK    S +E+ G+         +HP 
Sbjct: 453 HSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPE 512

Query: 490 IAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGV 549
           + +I    E+++  ++  GY+  T   L D+++  K+  L  HSEKLA+ FG+M    G 
Sbjct: 513 MDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGT 572

Query: 550 PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           PIRI+KNLR+C DCH+  K  S++ GRE IVRD NRFHHF  G CSC D+W
Sbjct: 573 PIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 39/326 (11%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALL----DVYAKCGLISDASRVFESMPERNEVTWS 205
           D+   K +H + ++  +  +VF  + L+    D  +   LI  ASR+F  +   N   ++
Sbjct: 29  DLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFN 88

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +M+ G   ++  ++A   + ++Q  GL  +  T   ++ +C  L  +  G Q H  + K 
Sbjct: 89  AMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKH 148

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR-----HARSV- 319
           GF  +++  +SLV MYA  G    A  +F  +   +VV W +MI GF++      AR + 
Sbjct: 149 GFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLF 208

Query: 320 -----------EVMI--------------LFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
                        MI              LF+ +Q  G+  NE   +SV+S+C+H+G +E
Sbjct: 209 DQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALE 268

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA- 413
            G+   D +VK    L N+   + ++D+  R G I +A  +  ++P   T S W +L+A 
Sbjct: 269 LGERAHDYVVKNGMTL-NLILGTALVDMYARCGSIDKAVWVFEDLPERDTLS-WTALIAG 326

Query: 414 -SCRNYRNLELAEIAAKQLFGMEPDN 438
            +   Y    L   A     G+ P +
Sbjct: 327 LAMHGYSERSLKYFATMVEAGLTPRD 352



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    ++SC +      G   H  II  G   D    N L++ Y+  G    A  +F  M
Sbjct: 121 TFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRM 180

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS-------------------- 134
               +VSW ++I  +   G  + A  LF  M  +    +S                    
Sbjct: 181 YYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFK 240

Query: 135 ----------EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
                     E  + SV+ +CA    +   ++ H + +K  M  N+ +GTAL+D+YA+CG
Sbjct: 241 VLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCG 300

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            I  A  VFE +PER+ ++W++++AG   +   E +L  F      GL     T ++V+ 
Sbjct: 301 SIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS 360

Query: 245 ACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAKCGCVVDA-YFVFSGIEEKNV 302
           AC+    + +G Q+   + +       +     +VD+  + G + +A  FV     + N 
Sbjct: 361 ACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNA 420

Query: 303 VLWNTMISGFSRHARSVEV 321
            +W  ++ G  R  ++ E+
Sbjct: 421 PVWGALL-GACRIHKNAEI 438



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           + S    AN T    + + + SCA   A   G+  H  ++  G+  + +    L++ Y++
Sbjct: 242 LQSQGVRANET---VMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYAR 298

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG I  A  VF+++P+R  +SW  +I     +G  + ++  F  M+  G TP  + T ++
Sbjct: 299 CGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTP-RDITFTA 357

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL------LDVYAKCGLISDASRVFE 194
           VL AC+    V        F +  +M R+  V   L      +D+  + G + +A R   
Sbjct: 358 VLSACSHGGLVERG-----FQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVL 412

Query: 195 SMPER-NEVTWSSMVAG 210
            MP + N   W +++  
Sbjct: 413 KMPVKPNAPVWGALLGA 429


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/607 (34%), Positives = 334/607 (55%), Gaps = 52/607 (8%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T  ++L +CAR  +   GK  H ++I    + D   ++ ++  Y+KCG    A++VF  
Sbjct: 292 TTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSS 351

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +  R  VSW  +IG +   G   E+V LF N +R       +F +++++  C    D+  
Sbjct: 352 LRDRNSVSWTVLIGGFLQYGCFSESVELF-NQMRAELMAVDQFALATLISGCCNTMDICL 410

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-------------- 199
             QLH   LK+   R V V  +L+ +YAKCG + +A  +F  M ER              
Sbjct: 411 GSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQ 470

Query: 200 -----------------NEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISS 241
                            N +TW++M+  ++Q+   E+ L ++        +  +  T  +
Sbjct: 471 VGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVT 530

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           +   CA + A   G Q+     K G   +    ++++ MY+KCG + +A   F  +  K+
Sbjct: 531 LFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKD 590

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           +V WN MI+G+S+H    + + +F+ +   G  P+  +Y++VLS CSH G+VE+GK YFD
Sbjct: 591 LVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFD 650

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
           +M + HN+ P + H+SCM+D+LGRAG + EA +LI  MP   TA +WG+LL++C+ + N 
Sbjct: 651 MMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNN 710

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           +LAE+AAK LF ++   +G ++LL+ +YA   + ++ A+ RKL+RD  +KK    SW+E+
Sbjct: 711 DLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEV 770

Query: 482 KGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHS 533
             +         +HP++  I  KL++L+E++  LGY           E  R +   IHHS
Sbjct: 771 NNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVR--------TESPRSE---IHHS 819

Query: 534 EKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593
           EKLA+ FG+M L   +PI IMKNLRIC DCH+ +K  S +  RE ++RD  RFHHF  GS
Sbjct: 820 EKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGS 879

Query: 594 CSCWDFW 600
           CSC D+W
Sbjct: 880 CSCMDYW 886



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 173/312 (55%), Gaps = 5/312 (1%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           N   +  N ++  Y+K   +  A ++F  MP+R +VSWN +I + + +GR +EA+ + ++
Sbjct: 222 NPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVD 281

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M  +G  P S  T +S L ACA    +   KQLHV  ++     + +V +A++++YAKCG
Sbjct: 282 MHGKGVRPDST-TYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCG 340

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
              +A RVF S+ +RN V+W+ ++ GF+Q   + E++ LF + +   +  +QF ++++I 
Sbjct: 341 CFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLIS 400

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
            C     +  G Q+H++  K+G    +  ++SL+ MYAKCG + +A  +F+ + E+++V 
Sbjct: 401 GCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVS 460

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W  MI+ +S+     +    F+ M       N  T+ ++L A    G  E G   +  M+
Sbjct: 461 WTGMITAYSQVGNIAKAREFFDDMSTR----NVITWNAMLGAYIQHGAEEDGLKMYSDML 516

Query: 365 KQHNVLPNVFHY 376
            + +V+P+   Y
Sbjct: 517 TEKDVIPDWVTY 528



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 209/465 (44%), Gaps = 69/465 (14%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN------------------ 66
           +A ++      L   L+SC    A    +  H+++I +GL +                  
Sbjct: 17  AATSHMAITQALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGAL 76

Query: 67  --------------DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
                         + +T NI++N Y+K G +S A ++F  MP R + SWNTI+  Y  +
Sbjct: 77  SDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQS 136

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR--NV 170
           G+   A+ +F++M + G +  + FT   V+ +C A    +    L +  L +  D   + 
Sbjct: 137 GQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALG--WHEVALQLLGLLSKFDSQDDP 194

Query: 171 FVGTALLDVYAKCGLISDASR-------------------------------VFESMPER 199
            V TAL+D+  +CG +  AS+                               +F+SMPER
Sbjct: 195 DVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPER 254

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           + V+W+ +++   ++    EAL +       G+  +  T +S + ACA L++L  GKQ+H
Sbjct: 255 DVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLH 314

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
             + +     + + AS++V++YAKCGC  +A  VFS + ++N V W  +I GF ++    
Sbjct: 315 VQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFS 374

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           E + LF +M+   +  ++    +++S C +   +  G     L +K  +    V   S +
Sbjct: 375 ESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNS-L 433

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           I +  + G +  A +LI N   +     W  ++ +     N+  A
Sbjct: 434 ISMYAKCGNLQNA-ELIFNFMAERDIVSWTGMITAYSQVGNIAKA 477



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 139/320 (43%), Gaps = 33/320 (10%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC-------- 81
           A +   L   +  C        G   H+  +  G     + SN LI+ Y+KC        
Sbjct: 389 AVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAEL 448

Query: 82  -----------------------GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
                                  G I+ AR+ FD+M  R +++WN ++G+Y  +G E++ 
Sbjct: 449 IFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDG 508

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           + ++ +ML E        T  ++   CA         Q+    +K  +  +  V  A++ 
Sbjct: 509 LKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVIT 568

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y+KCG IS+A + F+ +  ++ V+W++M+ G+ Q+ + ++A+ +F      G + +  +
Sbjct: 569 MYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYIS 628

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
             +V+  C+    + +GK    ++ +       +   S +VD+  + G +++A  +   +
Sbjct: 629 YVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEM 688

Query: 298 EEKNVV-LWNTMISGFSRHA 316
             K    +W  ++S    H 
Sbjct: 689 PMKPTAEVWGALLSACKTHG 708


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 348/608 (57%), Gaps = 50/608 (8%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY--SKCGLISGARKVFDEMPQ 96
           +L+SC   ++  + K  HA +I  GL    +T+N L+     S  G +S A ++FD++P+
Sbjct: 21  SLESC---KSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPK 77

Query: 97  RCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
             +  +NT+I ++         ++ +F++M+R      + +T   V  AC     V E +
Sbjct: 78  PDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGE 137

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV----------------------- 192
           Q+ V A+K  ++ N+FV  A++ +YA  GL+ +A RV                       
Sbjct: 138 QIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSG 197

Query: 193 --------FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
                   F+ M ER+ V+W++++AG+VQ   ++EAL LF      G   N+FT++S + 
Sbjct: 198 EIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALA 257

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS---GIEEKN 301
           ACA L AL QG+ +H  + K+    N    +SL+DMYAKCG +  A  VF    G++ K 
Sbjct: 258 ACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK- 316

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           V  WN MI G++ H +S E + LFE+M+   + PN+ T++++L+ACSH  +VE+G+ YF 
Sbjct: 317 VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFK 376

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            M   + + P + HY CM+D+LGR+GL+ EA + + NMP    A++WG+LL +CR ++++
Sbjct: 377 SMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDI 436

Query: 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI 481
           E  +   K +  ++ D+ G H+LL+N+Y+A+ +W+E    R+ I  S  KK    S +E+
Sbjct: 437 ERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIEL 496

Query: 482 K--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL-LIHH 532
                    G R+HP+  ++Y  L+++  ++K  GY PE    L D++D   +E  L  H
Sbjct: 497 NGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKH 556

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ FGL+   PG  IRI+KNLR+C DCH   KF S++  RE IVRD  R+HHF +G
Sbjct: 557 SEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDG 616

Query: 593 SCSCWDFW 600
            CSC D+W
Sbjct: 617 FCSCKDYW 624



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 150/321 (46%), Gaps = 37/321 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++C      + G+      I +GL ++   +N +I  Y+  GL+  AR+VFD  
Sbjct: 119 TFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS 178

Query: 95  PQRCIVSWNTIIGSYTTNG--------------RE-----------------QEAVALFI 123
             + + SWN +IG Y  +G              R+                 +EA+ LF 
Sbjct: 179 LDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFH 238

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            ML+ G  P +EFT++S L ACA    + + + +HV+  K+ +  N  +  +LLD+YAKC
Sbjct: 239 EMLQTGPPP-NEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKC 297

Query: 184 GLISDASRVF--ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           G I  A++VF  E   +     W++M+ G+  +   +EA+ LF + +V  +  N+ T  +
Sbjct: 298 GEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVA 357

Query: 242 VICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDA-YFVFSGIEE 299
           ++ AC+    + +G+     +  + G    +     +VD+  + G + +A   VF+    
Sbjct: 358 LLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMA 417

Query: 300 KNVVLWNTMISGFSRHARSVE 320
            +  +W  ++ G  R  + +E
Sbjct: 418 PDATIWGALL-GACRIHKDIE 437


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/602 (35%), Positives = 342/602 (56%), Gaps = 46/602 (7%)

Query: 35  TLQATLQSCARERAPVRGKVC--HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           T    L+   ++ A   GKV   HA I G  L+++       I+ +S CGL++ ARK+FD
Sbjct: 137 TFPFLLKGFTKDMALKYGKVLLNHAVIHGF-LDSNLFVQKGFIHLFSLCGLVNYARKIFD 195

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLR--EGKTPYSEFTVSSVLCACAAKRD 150
                 +V+WN ++  Y    R +E+  LFI M +  E  +P S  T+  +L AC+  +D
Sbjct: 196 MGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNS-VTLVLMLSACSKLKD 254

Query: 151 VFECKQLHVFALKAAM-DRNVFVGTALLDVYAKCG------------------------- 184
           +   K ++   +K  + + N+ +  AL+D++A CG                         
Sbjct: 255 LVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVT 314

Query: 185 ------LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
                  I  A + F+ MPER+ V+W++M+ G+++   ++E L LFR  Q+  ++ ++FT
Sbjct: 315 GFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFT 374

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + S++ ACA L AL  G+     + K    ++ F  ++L+DMY KCG V  A  +F+ ++
Sbjct: 375 MVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ 434

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           +K+   W  MI G + +    E + +F  M +A + P+E TYI V+ AC+H+G+V KGK 
Sbjct: 435 KKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKH 494

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
           +F  M  QH + PN+ HY CM+D+LGRAG + EA ++I+NMP    + +WGSLL +CR +
Sbjct: 495 FFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVH 554

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
           +N++LAE+AA ++  +EP+N   ++LL NIYAA ++W+ +   RK++ +  +KK    S 
Sbjct: 555 KNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSL 614

Query: 479 VE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           +E        + G ++HP+  EIY+KLE + +++   GY P+T     DV +  K+  L 
Sbjct: 615 MEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALY 674

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
            HSEKLA+ + L+    GV IRI+KNLR+C DCH      S++  RE IVRD  RFHHF 
Sbjct: 675 MHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFR 734

Query: 591 NG 592
           +G
Sbjct: 735 HG 736



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 181/377 (48%), Gaps = 45/377 (11%)

Query: 56  HAKIIGMGL--NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           H++ I  GL  N+  LT  I+     + G +  ARKVFDE+PQ  +  WNT+I  Y+   
Sbjct: 55  HSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRIN 114

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA-LKAAMDRNVFV 172
             +  V+L+  ML     P   FT   +L        +   K L   A +   +D N+FV
Sbjct: 115 CSESGVSLYKLMLVHNIKP-DGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFV 173

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF--RRAQVL 230
               + +++ CGL++ A ++F+       VTW+ +++G+ + + YEE+  LF     +  
Sbjct: 174 QKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCE 233

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSNMFAASSLVDMYAKCG---- 285
            +  N  T+  ++ AC+ L  L+ GK ++    K G    N+   ++L+DM+A CG    
Sbjct: 234 CVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDA 293

Query: 286 --------------------------CVVD-AYFVFSGIEEKNVVLWNTMISGFSRHARS 318
                                     C +D A   F  + E++ V W  MI G+ R  R 
Sbjct: 294 ARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRF 353

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG---KSYFDLMVKQHNVLPNVFH 375
            EV+ LF  MQ + + P+E T +S+L+AC+H+G +E G   K+Y D    ++ +  + F 
Sbjct: 354 KEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYID----KNKIKNDTFI 409

Query: 376 YSCMIDILGRAGLIHEA 392
            + +ID+  + G + +A
Sbjct: 410 GNALIDMYFKCGNVEKA 426



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 8/215 (3%)

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           +L LF +  +     + F + S I        + +  Q+H+   KTG  SN    + ++ 
Sbjct: 17  SLSLFLKRMISNTPLHSF-VKSPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVII 75

Query: 280 M--YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
                + G V  A  VF  I + +V +WNTMI G+SR   S   + L++ M    + P+ 
Sbjct: 76  FCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDG 135

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+  +L   +    ++ GK   +  V    +  N+F     I +    GL++ A   I 
Sbjct: 136 FTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARK-IF 194

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432
           +M        W  +L+    ++  E     +K+LF
Sbjct: 195 DMGDGWEVVTWNVVLSGYNRFKRYE----ESKRLF 225


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 316/535 (59%), Gaps = 12/535 (2%)

Query: 74   LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
            LI+ + +C  +  AR VF+EM    +VSW  ++ +   N   +E   LF  M  EG  P 
Sbjct: 578  LISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIP- 636

Query: 134  SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
             +FT+++ L  C A   +   K +H    +  ++ ++ V  ALL++Y+ CG   +A   F
Sbjct: 637  DKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFF 696

Query: 194  ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
            E+M  R+ V+W+ M A + Q  L +EA++LFR+ Q+ G++ ++ T S+ +    G A + 
Sbjct: 697  ETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVS 756

Query: 254  QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
             GK  HA+  ++G  S++  A+ LV +YAKCG + +A  +F G  +  VVL N +I   +
Sbjct: 757  DGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALA 816

Query: 314  RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            +H  S E + +F KMQQ G+ P+  T +S++SAC H GMVE+G S F  M +   + P +
Sbjct: 817  QHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTL 876

Query: 374  FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
             HY+C +D+LGRAG +  A  +I  MPF+    +W SLL +C+   + EL E  A+++  
Sbjct: 877  EHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILE 936

Query: 434  MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKR 485
            ++P N+  H++LSNIY A  +W++    RK + D  VK     SW EI         G R
Sbjct: 937  LDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDR 996

Query: 486  NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
            +HP+  EIY  L+KL   M++ GY  E +  L DVED  K++ L +HSE++A+ FGL+  
Sbjct: 997  SHPKTDEIYVVLDKLELLMRRAGY--EADKGL-DVEDELKEKALGYHSERIAIAFGLIAT 1053

Query: 546  CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             P   ++I+KNLR+CGDCH+  K+ S + GRE IVRD  RFHHF+NG+CSC D W
Sbjct: 1054 PPETTLKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 208/427 (48%), Gaps = 23/427 (5%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +L    A LQSC       +GK  H  I   GL       N LIN Y +CG +  A  
Sbjct: 22  AADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHA 81

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F +M +R +VSW  +I +    G    A ALF  ML E     + +T+ ++L ACA  R
Sbjct: 82  IFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141

Query: 150 DVFECKQLHVFALKAAMDR----NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           D+   + +H    +  ++R       VG A++++YAKCG + DA  VF ++PE++ V+W+
Sbjct: 142 DLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWT 201

Query: 206 SMVAGFVQN-ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +M   + Q    Y +AL +FR   +  L  N  T  + + AC    +L  G  +H++L +
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC---TSLRDGTWLHSLLHE 258

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVVLWNTMISGFSRHARSVEV 321
              G +  A+++L++MY KCG    AY VF  +   +E ++V WN MIS      R  + 
Sbjct: 259 ASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDA 318

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           M +F +++  G+ PN  T I++L+A +  G+       F   + +   L +V   + +I 
Sbjct: 319 MAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIIS 378

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +  + G    A+ +   + +      W ++L +  + ++           FG +  N  +
Sbjct: 379 MYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKS-----------FG-KVVNTFH 426

Query: 442 HLLLSNI 448
           H+LL+ I
Sbjct: 427 HMLLAGI 433



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 215/428 (50%), Gaps = 17/428 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGL----NNDTLTSNILINFYSKCGLISGARKV 90
           TL A L +CA  R    G+  HA I  +GL       TL  N +IN Y+KCG +  A  V
Sbjct: 129 TLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAV 188

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           F  +P++ +VSW  + G+Y    R   +A+ +F  ML +   P +  T  + L AC + R
Sbjct: 189 FLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAP-NVITFITALGACTSLR 247

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE---VTWSS 206
           D      LH    +A++  +     AL+++Y KCG    A  VF++M  R E   V+W++
Sbjct: 248 D---GTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNA 304

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA-LIQGKQVHAVLCKT 265
           M++  V+   + +A+ +FRR ++ G+  N  T+ +++ A A         +  H  + ++
Sbjct: 305 MISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWES 364

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMIL 324
           G+  ++   ++++ MYAKCG    A+ VF  I  K +V+ WNTM+          +V+  
Sbjct: 365 GYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNT 424

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M  AG+ PN+ ++I++L+ACS+   ++ G+    L++ +          + ++ + G
Sbjct: 425 FHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYG 484

Query: 385 RAGLIHEAYDLILNMPFDATASM-WGSLL-ASCRNYRNLELAEIAAKQL-FGMEPDNAGN 441
           + G I EA  +   MP  + + + W  +L A  +N R+ E      + L  G+ PD    
Sbjct: 485 KCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSF 544

Query: 442 HLLLSNIY 449
             +LS+ Y
Sbjct: 545 TSVLSSCY 552



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 193/361 (53%), Gaps = 9/361 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEMP- 95
           A L +C+   A   G+  H+ I+    +  ++  + +L++ Y KCG IS A  VF EMP 
Sbjct: 442 AILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPL 501

Query: 96  -QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+WN ++G+Y  N R +EA    + ML+ G  P    + +SVL +C   +   E 
Sbjct: 502 PSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLP-DALSFTSVLSSCYCSQ---EA 557

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + L +  L++   R+  + TAL+ ++ +C  +  A  VF  M   + V+W++MV+   +N
Sbjct: 558 QVLRMCILESGY-RSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAEN 616

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             ++E   LFRR Q+ G+  ++FT+++ +  C     L  GK +HA + + G  +++   
Sbjct: 617 RDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVE 676

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+ CG   +A   F  ++ +++V WN M + +++   + E ++LF +MQ  G+ 
Sbjct: 677 NALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVK 736

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++ T+ + L+      +V  GK  F  +  +  +  +V   + ++ +  + G + EA  
Sbjct: 737 PDKLTFSTTLNVSGGSALVSDGK-LFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMS 795

Query: 395 L 395
           L
Sbjct: 796 L 796



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 5/278 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL  TL +C        GKV HA +  +GL  D    N L+N YS CG    A   F+ M
Sbjct: 640 TLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETM 699

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN +  +Y   G  +EAV LF  M  EG  P  + T S+ L        V + 
Sbjct: 700 KARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKP-DKLTFSTTLNVSGGSALVSDG 758

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K  H  A ++ +D +V V T L+ +YAKCG + +A  +F    +   V  ++++    Q+
Sbjct: 759 KLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQH 818

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG--SNMF 272
              EEA+ +F + Q  G+  +  T+ S+I AC G A +++      +  K  FG    + 
Sbjct: 819 GFSEEAVKMFWKMQQEGVRPDVATLVSIISAC-GHAGMVEEGCSSFLTMKEYFGISPTLE 877

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMI 309
             +  VD+  + G +  A  +   +  E N ++W +++
Sbjct: 878 HYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/549 (37%), Positives = 328/549 (59%), Gaps = 15/549 (2%)

Query: 67  DTLTSNILINFYSKCGL-ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
           D  + N LI+  S+    +  AR++FD MPQR   +W+ ++  YT +G+ + A+AL+  M
Sbjct: 93  DICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRM 152

Query: 126 LRE--GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR---NVFVGTALLDVY 180
             E       +EFT SS L A AA R     ++LH   ++  +D    +  + +AL D+Y
Sbjct: 153 QEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMY 212

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF-RRAQVLGLEYNQFTI 239
           AKCG + DA RVF+ MP R+ V+W++MV  +       E   LF    +  G+  N+FT 
Sbjct: 213 AKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTY 272

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           + V+ ACA  A    G+QVH  + K+G G + FA S+L+ MY+KCG +  A  VF  + +
Sbjct: 273 AGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAK 332

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
            ++V W  +ISG++++ +  E +  F+   ++G+ P+  T++ VLSAC+H G+V+KG   
Sbjct: 333 PDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEI 392

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F  + +Q+ +     HY+C+ID+L R+G    A  +I NM       +W SLL  CR ++
Sbjct: 393 FHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHK 452

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N+ LA  AA+ LF +EP+N   ++ L+NIYA+   ++EV   R+++    + K  + SW+
Sbjct: 453 NVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWI 512

Query: 480 EIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           E+         G ++HP+  EIY+ L+KL  +M + GY  + E  LHDVED +K++ + +
Sbjct: 513 EVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGY 572

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSE+LA+ FG++    G PI++ KNLRICGDCH+ +K  S+I  R+ IVRD NRFHHF +
Sbjct: 573 HSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKD 632

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 633 GICSCRDYW 641



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 3/178 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA+      G+  H ++   G  +     + L+  YSKCG +  A +VF+ M
Sbjct: 271 TYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAM 330

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +  +VSW  +I  Y  NG+ +EA+  F   LR G  P    T   VL ACA    V + 
Sbjct: 331 AKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKP-DHVTFVGVLSACAHAGLVDKG 389

Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
            ++ H    +  ++        ++D+ ++ G    A ++  +M  + N+  W+S++ G
Sbjct: 390 LEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGG 447


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/579 (35%), Positives = 327/579 (56%), Gaps = 49/579 (8%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
            NA   +  T  + L++CA     + G+  H  +   G  ++    N L++ Y K G   
Sbjct: 120 PNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNC 179

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            A+K+FDEM  R +VSWNT+I  Y  +G   +A  +F  M                    
Sbjct: 180 IAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGM-------------------- 219

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
                               M++N+   + ++  YA+ G + +A ++FE+MP RN V+W+
Sbjct: 220 --------------------MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWN 259

Query: 206 SMVAGFVQNELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +M+AG+ QNE Y +A+ LFR+ Q   GL  N  T+ SV+ ACA L AL  GK +H  + +
Sbjct: 260 AMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRR 319

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
                 +F  ++L DMYAKCGCV++A  VF  + E++V+ W+ +I G + +  + E    
Sbjct: 320 NKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNF 379

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M + GL PN+ +++ +L+AC+H G+V+KG  YFD+M + + + P + HY C++D+L 
Sbjct: 380 FAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLS 439

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG + +A  LI +MP      +WG+LL  CR Y++ E  E    ++  ++ +++G+ + 
Sbjct: 440 RAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVY 499

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
           L+N+YA+  R ++ A  R  +RD++  K    SW+EI         G  +HP+   IYS 
Sbjct: 500 LANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSM 559

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           + +L  +MK  GYKP+T+  +H++++  K++ L  HSEKLAL FGL+    G  IRI+KN
Sbjct: 560 IRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKN 619

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LR+C DCH  +K  S+I  RE +VRD +RFHHF +G CS
Sbjct: 620 LRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 143/323 (44%), Gaps = 75/323 (23%)

Query: 141 VLCACAAK---RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE--- 194
           +L  CA +   R +FE +   + +   ++D N+ +    + V +  G +  +  +F    
Sbjct: 27  LLLRCATQLSMRQLFEIQAQIIASPIPSIDPNI-IAVKFIGVSSSHGNLRHSVLIFNHFL 85

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN--QFTISSVICACAGLAAL 252
           S P  N   +++++  F Q+  +   +  F    VL    N  ++T +SV+ ACAGLA +
Sbjct: 86  SFP--NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQV 143

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT----- 307
           ++G++VH  + K G  SN+F  +SLVD+Y K GC   A  +F  +  ++VV WNT     
Sbjct: 144 LEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGY 203

Query: 308 --------------------------MISGFSRHARSVEVMILFEKM------------- 328
                                     MISG++R     E   LFE M             
Sbjct: 204 CFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIA 263

Query: 329 -------------------QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
                               + GL PN+ T +SVLSAC+H+G ++ GK +    ++++ +
Sbjct: 264 GYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK-WIHRFIRRNKI 322

Query: 370 LPNVFHYSCMIDILGRAGLIHEA 392
              +F  + + D+  + G + EA
Sbjct: 323 EVGLFLGNALADMYAKCGCVLEA 345


>gi|125586937|gb|EAZ27601.1| hypothetical protein OsJ_11548 [Oryza sativa Japonica Group]
          Length = 651

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 324/581 (55%), Gaps = 19/581 (3%)

Query: 36  LQATLQSCARERAPVR---GKVCHAKIIGMGL---NNDTLTSNILINFYSKCGLISGARK 89
           L+A   S +  R P     G   HA+ +  G    ++ T+ +  +++FY+ C     ARK
Sbjct: 71  LKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARK 130

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSVLCACA-- 146
           VFD MP+R  V+WN +I  Y   GR +EA+ LF +M REG       +T  ++L      
Sbjct: 131 VFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGRE 190

Query: 147 --AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
             + R +     LH   +KA ++R+ FVG +L+ +YA    + DA   F+ +   + + W
Sbjct: 191 GGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVW 250

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           SSM++ +V  E  E AL++F       ++  QF  S+V   C  +  L  GKQVHA   K
Sbjct: 251 SSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLK 310

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
           +    +    ++L+ MY+ CGC+ DA  VFS  +  NV+ +N+MIS   +H    E +  
Sbjct: 311 SNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEH 370

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F +M+ AGL P+E T ++++S+ +H G+V +G   F+ MV    + P   HY+C++D+L 
Sbjct: 371 FRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLA 430

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           R+G I +A   I  MPF+A A +W  +L +C  +R++E  +  A+ LF MEP  A N++L
Sbjct: 431 RSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYIL 490

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSK 496
           L NIYA   RW E  + R L+ +  V K+ + SW+E+  +        R+HP   EIY  
Sbjct: 491 LGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRN 550

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           L++L+  +K  GY P+     H+++  RK+E L +H EKLA  FG +    G  +RIMKN
Sbjct: 551 LDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKN 610

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           LR+CGDCH   K+ S + GRE I+RD  RFHHF +G CS W
Sbjct: 611 LRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSLW 651


>gi|115438899|ref|NP_001043729.1| Os01g0651100 [Oryza sativa Japonica Group]
 gi|113533260|dbj|BAF05643.1| Os01g0651100, partial [Oryza sativa Japonica Group]
          Length = 503

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/505 (40%), Positives = 303/505 (60%), Gaps = 14/505 (2%)

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA----AKRDVFECKQLHVFALK 163
           S++ NG    A   F  ML  G  P ++  + S   A A    + R       LH  + K
Sbjct: 1   SFSQNGLPAAAFDAFRRMLAAG-VPATDRNIPSAAKAVAAAEDSSRPPLAPHALHGLSAK 59

Query: 164 AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALIL 223
                +VFVG+++LD+YAKCG ++DA R+F+ MP+RN V+WS+++ G+    ++  A+ +
Sbjct: 60  TPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAAMEI 119

Query: 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
           FR A    +  N FT+S ++  CA       G QVHA   KT   ++ F  SSLV +Y+K
Sbjct: 120 FRLALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSK 179

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           CG V  AY VF    E+N+ +WN  ++  ++H  +      F  MQ AG  PN  T++S+
Sbjct: 180 CGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSL 239

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           ++ACSH G+V++GK YF LM K++ + P   HY+ M+D+LGR G I EA  LI +MP + 
Sbjct: 240 ITACSHAGLVDEGKRYFSLM-KEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEP 298

Query: 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463
              +WG+LL +CR +++ + A IAAK+LF     ++G H+LLS+ YAA  R  + A ARK
Sbjct: 299 PEYVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARK 358

Query: 464 LIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEH 515
            +RD+ V+KE   SW+E  G+        R HPR  EIY+ LEK+ E+M+  GY  +T  
Sbjct: 359 AMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSA 418

Query: 516 DLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
            + DV+   KQ  + +HSE+LA+  GL+ +  GVPIR+MKNLR+C DCH+ +K+ S+  G
Sbjct: 419 VVKDVDKDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTG 478

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           R  I+RD  RFH F +G CSC DFW
Sbjct: 479 RIVILRDNRRFHRFEDGVCSCGDFW 503



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 4/265 (1%)

Query: 47  RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           R P+     H          D    + +++ Y+KCG ++ AR++FDEMP+R +VSW+ +I
Sbjct: 45  RPPLAPHALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALI 104

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAA 165
             Y   G    A+ +F   L E   P ++FTVS +L  CAA   +FE   Q+H  ++K A
Sbjct: 105 CGYADAGMHSAAMEIFRLALEEA-VPVNDFTVSCILRVCAAA-TLFELGAQVHARSIKTA 162

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
           ++ + FVG++L+ +Y+KCGL+  A +VF   PERN   W++ +    Q+     A   F 
Sbjct: 163 LNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFM 222

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
             Q  G   N  T  S+I AC+    + +GK+  +++ +          +++VD+  + G
Sbjct: 223 DMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMKEYRIEPQAEHYAAMVDLLGRVG 282

Query: 286 CVVDAYFVFSGIE-EKNVVLWNTMI 309
            + +A  +   +  E    +W  ++
Sbjct: 283 RISEALGLIESMPMEPPEYVWGALL 307



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 2/175 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L+ CA       G   HA+ I   LN      + L++ YSKCGL+  A +VF E 
Sbjct: 134 TVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEA 193

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +  WN  + +   +G    A   F++M   G  P S  T  S++ AC+    V E 
Sbjct: 194 PERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNS-ITFLSLITACSHAGLVDEG 252

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
           K+      +  ++       A++D+  + G IS+A  + ESMP E  E  W +++
Sbjct: 253 KRYFSLMKEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALL 307


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/576 (37%), Positives = 328/576 (56%), Gaps = 17/576 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A LQ+C   +        H+ ++  GL+NDT  +N LIN Y +   I  A+K+FDEMP R
Sbjct: 32  AKLQTC---KDLTSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEMPHR 88

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +VSW +++  Y + G+   A+ LF  M      P +EFT ++++ AC+   ++   +++
Sbjct: 89  NVVSWTSLMAGYVSQGQPNMALCLFHQMQGTLVLP-NEFTFATLINACSILANLEIGRRI 147

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H     + +  N+   ++L+D+Y KC  + +A  +F+SM  RN V+W+SM+  + QN   
Sbjct: 148 HALVEVSGLGSNLVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQG 207

Query: 218 EEALILFRRAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
             AL LF+      L+  N F + S + ACA L +L  GK  H V+ + G  ++   AS+
Sbjct: 208 HHALQLFKEFNHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEASDVIASA 267

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           LVDMYAKCGCV  +  +F  I+  +V+ + +MI G +++   +  + LF++M    + PN
Sbjct: 268 LVDMYAKCGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPN 327

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           + T++ VL ACSH G+V+KG    D M  ++ V P+  HY+C+ D+LGR G I EAY L 
Sbjct: 328 DITFVGVLHACSHSGLVDKGLELLDSMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLA 387

Query: 397 --LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             + +  D  A +WG+LL++ R Y  +++A  A+ +L       AG ++ LSN YA    
Sbjct: 388 KSVQVEGDGYAMLWGTLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNAYALAGD 447

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK---------RNHPRIAEIYSKLEKLVEEMK 505
           WE     R  ++ + V KE   SW+EIK             + +  EI S L +L E MK
Sbjct: 448 WENAHNLRSEMKHTGVYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSLLRELEERMK 507

Query: 506 KLGYKPETEHDLH-DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
             GY   T+  +  DVE+  K+E++  HSEKLAL FGL+    GV IRIMKNLR+C DCH
Sbjct: 508 GRGYVGGTKGLVFVDVEEEAKEEIVSMHSEKLALAFGLINTPKGVTIRIMKNLRMCRDCH 567

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              K  S I  RE +VRD+NRFHHF NG C+C DFW
Sbjct: 568 GAFKLISDIVERELVVRDVNRFHHFKNGLCTCGDFW 603



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + + +CA   +   GK+ H  +I +G     + ++ L++ Y+KCG ++ + K+F  + 
Sbjct: 230 LCSAVSACASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAKCGCVNYSAKIFRRIQ 289

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
              ++ + ++I      G    ++ LF  M+     P ++ T   VL AC+
Sbjct: 290 NPSVIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKP-NDITFVGVLHACS 339


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 333/598 (55%), Gaps = 50/598 (8%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFY--SKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  HA  I  G  +  L +  L+ F   S    I  ARK F ++      SWNTII +  
Sbjct: 32  KQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALA 91

Query: 111 TNGREQ-------EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK 163
            +  +        EA+  F +ML +G    ++FT   VL ACA    + E KQLH F +K
Sbjct: 92  DSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVK 151

Query: 164 AAMDRNVFVGTALLDVYAKCGLISDAS--------------------------------R 191
             +  + FV + L+ VY  CG + DA                                  
Sbjct: 152 LGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRE 211

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +F+SMP ++ V+W+ M++G  QN  ++EA+ +F   Q+  +  N  T+ SV+ A + L A
Sbjct: 212 LFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGA 271

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMIS 310
           +  GK VH    K     +    S+L+DMY+KCG +  A  VF GI  +KN + W+ +I 
Sbjct: 272 IELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIG 331

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
           G + H R+ + +  F +MQQAG+ P++  YI VLSACSH G+VE+G+S +  MV    +L
Sbjct: 332 GLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLL 391

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P + HY CM+D+LGRAG + EA  LILNMP      +  +LL +C+ + N+E+ E  AK 
Sbjct: 392 PRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKI 451

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG------- 483
           L G  P ++G+++ LSN++A+   WE V + R  +++ +++K+   SW+E+ G       
Sbjct: 452 LMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLV 511

Query: 484 -KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGL 542
              +HPR   I+S LE++ + ++ +GY+P T   L ++++  KQ  L +HSEK+A+ FGL
Sbjct: 512 EDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGL 571

Query: 543 MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +   P  P++I+KNLR+C DCHS +K  S+I  R+ IVRD  RFHHF NGSCSC D+W
Sbjct: 572 ISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 35/290 (12%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS----------------------- 71
           T    L++CA+      GK  H  ++ +GL +D                           
Sbjct: 125 TFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQT 184

Query: 72  ---------NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
                    N++I+ Y + G +  +R++FD MP + +VSWN +I     NG  +EA+ +F
Sbjct: 185 RLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMF 244

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
            +M + G  P +  T+ SVL A +    +   K +H+FA K  ++ +  +G+AL+D+Y+K
Sbjct: 245 HDM-QLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSK 303

Query: 183 CGLISDASRVFESM-PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           CG I  A +VFE +  ++N +TWS+++ G   +    +AL  F R Q  G+  +      
Sbjct: 304 CGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIG 363

Query: 242 VICACAGLAALIQGKQVHAVLCK-TGFGSNMFAASSLVDMYAKCGCVVDA 290
           V+ AC+    + +G+ ++  +    G    +     +VD+  + GC+ +A
Sbjct: 364 VLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEA 413



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 5/170 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L + +R  A   GK  H       +  D +  + LI+ YSKCG I  A +VF+ +
Sbjct: 258 TLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGI 317

Query: 95  -PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
             ++  ++W+ IIG    +GR ++A+  F  M + G TP S+     VL AC+    V E
Sbjct: 318 RNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTP-SDVVYIGVLSACSHAGLVEE 376

Query: 154 CKQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE 201
            + +  H+  +   + R    G  ++D+  + G + +A ++  +MP + +
Sbjct: 377 GRSIYYHMVNIVGLLPRIEHYG-CMVDLLGRAGCLEEAEQLILNMPVKPD 425


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 317/553 (57%), Gaps = 9/553 (1%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  I   GL++ T   N L+N Y +C     AR VFD++    ++SWN++IG Y    R 
Sbjct: 385 HLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERH 444

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            +A+ LF  M ++G  P       ++L AC         K +H    ++ +  +  V T+
Sbjct: 445 DDALQLFRTMQQQGIQP-DRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTS 503

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+++YAK G +  A  + + M E+    W+ ++ G+  +    EAL  +++ Q+  +  +
Sbjct: 504 LVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVD 563

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           + T  SV+ AC    +L +GK +H+   + G  S++   ++L +MY+KCG + +A  +F 
Sbjct: 564 KVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFD 623

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            +  ++ V WN M+  +++H  S EV+ L  KM+Q G+  N  T++SVLS+CSH G++ +
Sbjct: 624 SMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAE 683

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           G  YF  +     +     HY C++D+LGRAG + EA   I  MP +     W SLL +C
Sbjct: 684 GCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGAC 743

Query: 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS 475
           R  ++L+  ++AA +L  ++P N+   ++LSNIY+    W+  A+ R+ +    VKK   
Sbjct: 744 RVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPG 803

Query: 476 KSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
            S +++K K         +HPR AEIY K+E+L   M++ GY P+T+  LHDV++ +K+ 
Sbjct: 804 ISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKES 863

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
           LL +HSEKLA+ FGL+       + I KNLR+C DCH+  KF S+I GRE +VRD +RFH
Sbjct: 864 LLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFH 923

Query: 588 HFTNGSCSCWDFW 600
           HF +GSCSC D+W
Sbjct: 924 HFRDGSCSCKDYW 936



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/435 (30%), Positives = 222/435 (51%), Gaps = 13/435 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL A L SC   R    G + HA  +  G   +TL +  L+N Y KCG +  A+ VF+EM
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 95  PQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            ++ +V+WN ++G Y+  G   + AV LF  ML EG    +  T  +VL +      + +
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG-VKANVITFLNVLNSVVDPDALRK 178

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H    ++    +VFV TAL++ Y KCG ++DA +VF+ MP R+  TW+SM++ +  
Sbjct: 179 GKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI 238

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +E   EA  +F+R Q  G   ++ T  S++ AC     L  GK V   + +T F  ++F 
Sbjct: 239 SERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFV 298

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+ MYA+C    DA  VF  +++ N++ W+ +I+ F+ H    E +  F  MQQ G+
Sbjct: 299 GTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGI 358

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T+IS+L+  +    +E+  S   L++ +H +       + ++++ GR     +A 
Sbjct: 359 LPNRVTFISLLNGFTTPSGLEE-LSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDAR 417

Query: 394 DLI--LNMP-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
            +   L +P   +  SM G  +   R+   L+L     +Q  G++PD      +L     
Sbjct: 418 TVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQ--GIQPDRVNFMTILGACTI 475

Query: 451 ANRRWEEVARARKLI 465
            +       R RKL+
Sbjct: 476 GSH-----GRTRKLV 485



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 168/282 (59%), Gaps = 2/282 (0%)

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
            YS+CG +  A   F ++  R +VSWN +I +Y++    QEA+ALF  ML EG  P +  
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAP-NAI 59

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
           T+ +VL +C + R++ +   +H  +L+    +N  V TALL++Y KCG + DA  VFE M
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 197 PERNEVTWSSMVAGF-VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
            E+N VTW++M+  + +Q   ++ A+ LF R  + G++ N  T  +V+ +     AL +G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           K +H+ + ++    ++F  ++LV+ Y KCG + DA  VF G+  ++V  WN+MIS +S  
Sbjct: 180 KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            RS E   +F++MQQ G   +  T++S+L AC +   ++ GK
Sbjct: 240 ERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGK 281



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 139/273 (50%), Gaps = 8/273 (2%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           T+ S  R R     K+ H  +   GL    L    L+N Y+K G +  A  +  EM ++ 
Sbjct: 474 TIGSHGRTR-----KLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQ 528

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           I +WN +I  Y  +GR +EA+  +  +  E   P  + T  SVL AC +   + E K +H
Sbjct: 529 ITAWNVLINGYALHGRSREALEAYQKLQLEA-IPVDKVTFISVLNACTSSTSLAEGKMIH 587

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             A++  +D +V V  AL ++Y+KCG + +A R+F+SMP R+ V+W+ M+  + Q+   E
Sbjct: 588 SNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESE 647

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLCKTGFGSNMFAASSL 277
           E L L R+ +  G++ N  T  SV+ +C+    + +G Q  H++    G          L
Sbjct: 648 EVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCL 707

Query: 278 VDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMI 309
           VD+  + G + +A    S +  E  +V W +++
Sbjct: 708 VDLLGRAGKLQEAEKYISKMPLEPGIVTWASLL 740



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 128/237 (54%), Gaps = 3/237 (1%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238
           +Y++CG + DA   F  +  RN V+W+ M++ +   + ++EAL LF    + G+  N  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE 298
           + +V+ +C     L  G  VHA+  + GF  N   A++L++MY KCG ++DA  VF  + 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 299 EKNVVLWNTMISGFSRHARSVEVMI-LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           EKNVV WN M+  +S      ++ + LF +M   G+  N  T+++VL++      + KGK
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
            +    V++     +VF  + +++   + G + +A  +   MP  +  + W S++++
Sbjct: 181 -FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGT-WNSMISA 235



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 12/189 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C    +   GK+ H+  +  GL++D +  N L N YSKCG +  AR++FD M
Sbjct: 566 TFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSM 625

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
           P R  VSWN ++ +Y  +G  +E + L   M +EG    +  T  SVL +C+    + E 
Sbjct: 626 PIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG-VKLNGITFVSVLSSCSHAGLIAEG 684

Query: 154 CKQLHVFALKAAMDRNVFVGTA----LLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
           C+  H        DR + V T     L+D+  + G + +A +    MP E   VTW+S++
Sbjct: 685 CQYFHSL----GHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLL 740

Query: 209 -AGFVQNEL 216
            A  VQ +L
Sbjct: 741 GACRVQKDL 749


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/615 (35%), Positives = 339/615 (55%), Gaps = 54/615 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +    L++ ++  A   G   H     +   +D      L++ Y+ CG I+ AR VFDEM
Sbjct: 116 SFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEM 175

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            QR +V+WNT+I  Y   G   EA  LF  M      P  E  + +++ AC    ++   
Sbjct: 176 SQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYN 234

Query: 155 KQLHVFALK--------------------AAMD-----------RNVFVGTALLDVYAKC 183
           + ++ F ++                      MD           RN+FV TA++  Y+K 
Sbjct: 235 RAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKA 294

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G + DA  +F+    ++ V W++M++ + +++  +EAL +F      G++ +  T+ SVI
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVI 354

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC  L  L + K VH      G  S +   ++L++MYAKCG +  A  VF  +  +NVV
Sbjct: 355 SACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVV 414

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W++MI+ F+ H  + + + LF +M+Q  + PNE T++ VL  CSH G+VE+GK  F  M
Sbjct: 415 SWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASM 474

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
             ++N+ P + HY CM+D+ GRA L+ EA ++I +MP      +WGSL+++CR +  LEL
Sbjct: 475 TDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELEL 534

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
            E+AAK++  +EPD+ G  +L+SNIYA   RW+ V   R ++   +V KEK  S +++ G
Sbjct: 535 GELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNG 594

Query: 484 K--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
           K        + H +  EIY+KL ++V ++K  GY P+    L DVE+  K++L++ HSEK
Sbjct: 595 KSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEK 654

Query: 536 LALTFGLM----------CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           LAL FGLM          C   GV IRI+KNLR+C DCH+F K  S++   E IVRD  R
Sbjct: 655 LALCFGLMNKEKEEEKGSC---GV-IRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTR 710

Query: 586 FHHFTNGSCSCWDFW 600
           FH + +G CSC D+W
Sbjct: 711 FHRYKDGLCSCRDYW 725



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 38/346 (10%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           + +N+++   + +G E  A  LF   +R     +   +   +L A +    +FE  +LH 
Sbjct: 80  IVFNSLLRDLSRSG-EPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHG 138

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           FA K A   + FV T L+D+YA CG I+ A  VF+ M +R+ VTW++M+  + +  L +E
Sbjct: 139 FAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDE 198

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-------------- 265
           A  LF   +   +  ++  + +++ AC     +   + ++  L +               
Sbjct: 199 AFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVT 258

Query: 266 ---GFG--------------SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
              G G               N+F ++++V  Y+K G + DA  +F   E K++V W TM
Sbjct: 259 MYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTM 318

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK--SYFDLMVKQ 366
           IS ++      E + +FE+M  +G+ P+  T +SV+SAC ++G ++K K    +  +   
Sbjct: 319 ISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGL 378

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            +VLP     + +I++  + G +  A D+   MP     S W S++
Sbjct: 379 ESVLPI---DNALINMYAKCGGLDAARDVFEKMPTRNVVS-WSSMI 420



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ T+ + + +C       + K  H      GL +     N LIN Y+KCG +  AR VF
Sbjct: 346 DVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVF 405

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           ++MP R +VSW+++I ++  +G   ++++LF  M +E   P +E T   VL  C+    V
Sbjct: 406 EKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEP-NEVTFVGVLYGCSHSGLV 464

Query: 152 FECKQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMP-ERNEVTW 204
            E K++      A+M     +         ++D++ +  L+ +A  V ESMP   N V W
Sbjct: 465 EEGKKIF-----ASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIW 519

Query: 205 SSMVAG 210
            S+++ 
Sbjct: 520 GSLMSA 525


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/570 (33%), Positives = 329/570 (57%), Gaps = 10/570 (1%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL + L +CA+ R    G+V H   +  GL  +T  +N L++ YS C       ++F  M
Sbjct: 520  TLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSM 579

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             Q+ +VSW  +I SY   G   +   L   M+ +G  P   F V+S L A A    + + 
Sbjct: 580  GQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRP-DVFAVTSALHAFAGDESLKQG 638

Query: 155  KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            K +H + ++  M++ + V  AL+++Y KC  + +A  +F+ +  ++ ++W++++ G+ +N
Sbjct: 639  KSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRN 698

Query: 215  ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
                E+  LF    +L    N  T++ ++ A A +++L +G+++HA   + GF  + +A+
Sbjct: 699  NFPNESFSLFSD-MLLQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYAS 757

Query: 275  SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            ++LVDMY KCG ++ A  +F  + +KN++ W  MI+G+  H      + LFE+M+ +G+ 
Sbjct: 758  NALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIE 817

Query: 335  PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
            P+  ++ ++L AC H G+  +G+ +F  M K++ + P + HY+C++D+L R G + EA +
Sbjct: 818  PDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALE 877

Query: 395  LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
             I +MP +  +S+W SLL  CR ++N++LAE  A ++F +EP+N G ++LL+NIYA   R
Sbjct: 878  FIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAER 937

Query: 455  WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
            WE V + +  I    +++    SW+E++ K        RNHP    I   L+ +   M++
Sbjct: 938  WEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQ 997

Query: 507  LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
             G+ P+ ++ L   +D+   E L  HS KLA+ FG++ L  G PIR+ KN ++C  CH  
Sbjct: 998  EGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEA 1057

Query: 567  MKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
             KF S++  RE I+RD +RFH F  G CSC
Sbjct: 1058 AKFISKMCNREIILRDSSRFHRFEGGRCSC 1087



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/415 (30%), Positives = 195/415 (46%), Gaps = 39/415 (9%)

Query: 39  TLQSCARERAPVRGKVCHAKI-----IGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
            +Q C  ER+    K  HA I        G     L   +++  Y KCG +  AR VFD 
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLA-YLKCGDLGEARTVFDG 161

Query: 94  MPQRC--IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           MP +   +  W +++ +Y   G  QEAV+LF  M   G +P +   VS VL   ++   +
Sbjct: 162 MPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAH-AVSCVLKCVSSLGSL 220

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
            E + +H    K  + +   V  AL+ VY++CG + DA+RVF+SM  R+ ++W+SM+ G 
Sbjct: 221 TEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGC 280

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             N  +  A+ LF +    G E +  T+ SV+ ACAGL   + GK VH    K+G    +
Sbjct: 281 FSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGL 340

Query: 272 FAASSLVD----------MYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVE 320
            +  S +D          MY KCG +  A  VF  +  K NV +WN ++ G+++     E
Sbjct: 341 DSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEE 400

Query: 321 VMILFEKMQQAGLHPNEQTYISVLS-----ACSHIGMVEKG---KSYFDLMVKQHNVLPN 372
            + LF +M + G+ P+E     +L      +C+  G+V  G   K  F       N L  
Sbjct: 401 SLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNAL-- 458

Query: 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC-RNYRNLELAEI 426
                  I    ++ +I +A  +   MP   T S W S+++ C  N  N E  E+
Sbjct: 459 -------ISFYAKSNMIGDAVLVFNRMPRQDTIS-WNSVISGCSSNGLNSEAIEL 505



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 173/363 (47%), Gaps = 24/363 (6%)

Query: 28  ANATELS--TLQATLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNI--------LI 75
           +  TE+S  T+ + L +CA     + GK  H   +  GL    D++ S I        L+
Sbjct: 298 SQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLV 357

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVS-WNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
             Y KCG ++ AR+VFD M  +  V  WN I+G Y   G  +E+++LF+ M   G  P  
Sbjct: 358 FMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAP-D 416

Query: 135 EFTVSSVL----CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
           E  +S +L    C   A+  +      H + +K        V  AL+  YAK  +I DA 
Sbjct: 417 EHAISCLLKCITCLSCARDGLVA----HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAV 472

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
            VF  MP ++ ++W+S+++G   N L  EA+ LF R    G E +  T+ SV+ ACA   
Sbjct: 473 LVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSR 532

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
               G+ VH    KTG       A++L+DMY+ C        +F  + +KNVV W  MI+
Sbjct: 533 YWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMIT 592

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HN 368
            + R     +V  L ++M   G+ P+     S L A +    +++GKS     ++     
Sbjct: 593 SYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEK 652

Query: 369 VLP 371
           +LP
Sbjct: 653 LLP 655



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 154/288 (53%), Gaps = 8/288 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++  + + L + A + +  +GK  H   I  G+      +N L+  Y KC  +  AR +F
Sbjct: 618 DVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIF 677

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D +  + ++SWNT+IG Y+ N    E+ +LF +ML + +   +  T++ +L A A+   +
Sbjct: 678 DRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRP--NAVTMTCILPAAASISSL 735

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              +++H +AL+     + +   AL+D+Y KCG +  A  +F+ + ++N ++W+ M+AG+
Sbjct: 736 ERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGY 795

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKT-GFG 268
             +   + A+ LF + +  G+E +  + S+++ AC  +GLAA  +G++    + K     
Sbjct: 796 GMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAA--EGRRFFKAMQKEYKIE 853

Query: 269 SNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
             +   + +VD+ ++ G + +A  F+ S   E +  +W +++ G   H
Sbjct: 854 PKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIH 901


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 334/589 (56%), Gaps = 30/589 (5%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +C+  R    G+  H   I  G +  T   N L   Y K G +    + F   P + +
Sbjct: 2   LSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNV 61

Query: 100 VSWNTIIGSYTTNGREQE-AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           ++W T+I S   +    +  ++LF++ML  G  P +EFT++SV+  C A+ D+   KQ+ 
Sbjct: 62  ITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMP-NEFTLTSVMSLCGARLDMSLGKQVQ 120

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ----- 213
            F  K   + N+ V  + + +Y + G   +A R+FE M   + +TW++M++G+ Q     
Sbjct: 121 AFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSA 180

Query: 214 -NELYE-----EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
            ++L+      +AL LFR      L+ + FT SS++  C+ + AL QG+Q+HA   KTG 
Sbjct: 181 KDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGC 240

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            S++   S+LV+MY KCG +  A   F  +  +  V W +MISG+S+H RS + + LFE 
Sbjct: 241 LSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFED 300

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M  +G  PNE T++S+LSACS+ G+VE+ + YFD+M  ++++ P V HY CM+D+  R G
Sbjct: 301 MVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLG 360

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            + +A+  I    F+   ++W SL+A CR++ N+ELA  AA +L  ++P     ++LL N
Sbjct: 361 RLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLN 420

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEK 499
           +Y +  RW +VAR RKL +  +V   + +SW+ I+ K          HP+  E+Y  LE 
Sbjct: 421 MYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLEN 480

Query: 500 LVEEMKKLGYK-----PETEHDLHDVEDSRKQ----ELLIHHSEKLALTFGLMCLCPGVP 550
           L+E+ K +GY+     PE   D  + +D +       L+ HHSE+LA+  GL+   PG  
Sbjct: 481 LLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGAT 540

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           +R+ KN+ +C DCHS +K+ S +A RE +VRD  R H F +G CSC DF
Sbjct: 541 VRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 589



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 148/285 (51%), Gaps = 14/285 (4%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC+A R +   +Q+H +++K   D    +G +L  +Y K G +    R F+  P++N
Sbjct: 1   MLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKN 60

Query: 201 EVTWSSMVAGFVQNELY-EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
            +TW++M++   ++E Y +  L LF      G+  N+FT++SV+  C     +  GKQV 
Sbjct: 61  VITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQ 120

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR----- 314
           A   K G  +N+   +S + +Y + G   +A  +F  ++  +++ WN MISG+++     
Sbjct: 121 AFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSA 180

Query: 315 ----HARS--VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
               HARS   + + LF  + ++ L P+  T+ S+LS CS +  +E+G+      +K   
Sbjct: 181 KDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKT-G 239

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            L +V   S ++++  + G I  A    + MP   T   W S+++
Sbjct: 240 CLSDVVVNSALVNMYNKCGSIECATKAFVEMP-TRTPVTWTSMIS 283



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 15/187 (8%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T  + L  C+   A  +G+  HA  I  G  +D + ++ L+N Y+KCG I  A K F
Sbjct: 208 DLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAF 267

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EMP R  V+W ++I  Y+ +GR Q+A+ LF +M+  G  P +E T  S+L AC+    V
Sbjct: 268 VEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARP-NEITFVSLLSACSYAGLV 326

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYA-------KCGLISDA-SRVFESMPERNEVT 203
            E ++         M RN +    L+D Y        + G + DA S +  +  E NE  
Sbjct: 327 EEAERYF------DMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAI 380

Query: 204 WSSMVAG 210
           WSS+VAG
Sbjct: 381 WSSLVAG 387


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/617 (36%), Positives = 332/617 (53%), Gaps = 60/617 (9%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNN--DTLTSNILINFYSKCGLISGARKVFDEMPQ- 96
           L+SCARE +   G+  HA II  G+    +T   N L+ FY+ CG    ARKVFDE+P  
Sbjct: 20  LRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPHS 79

Query: 97  -RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
            +  V W T++G +  +    EA+ +F+ M R G  P  E T+  +   CA   DV    
Sbjct: 80  HKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKP-DEVTLVCLFGGCARLGDVVVGA 138

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF---------------------- 193
           Q H   +K  +        A++D+YAK GL+ +A RVF                      
Sbjct: 139 QGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSE 198

Query: 194 ---------ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVI 243
                    + MPERNEV W+ M+AG++ + L +E+  L R     L +E N  T+ S++
Sbjct: 199 GVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSIL 258

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGS-NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
            AC+    L+ G+ VHA   KT     N+   +++VDMYAKCG +  A+  F  + ++NV
Sbjct: 259 TACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNV 318

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WN M+SG + H      + +F +M +    P++ T+ SVLSACSH G+V++G  YF  
Sbjct: 319 VSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGN 377

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           +   + + P V HY+CM+D+LGRAG + EA  L+  MP      + GSLL SC  +  L+
Sbjct: 378 LESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQ 437

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           L E   ++L  ++P N   H+LLSN+YA   +       R++++   +KK    S + + 
Sbjct: 438 LGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVG 497

Query: 483 GK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPET-----------EHDLHDVEDS 523
           G+        ++HPR  E+Y+ L++++  ++  GY P T           E DL  VE  
Sbjct: 498 GQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDL--VEQE 555

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
            K++ L  HSEKLA+ FGL+   PGVP+ I KNLRIC DCHS +K  S+I  RE ++RD 
Sbjct: 556 EKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDR 615

Query: 584 NRFHHFTNGSCSCWDFW 600
           NRFH F  GSCSC D+W
Sbjct: 616 NRFHCFKEGSCSCCDYW 632



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 165/368 (44%), Gaps = 76/368 (20%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK----- 89
           TL      CAR    V G   H  ++ MGL       N +++ Y+K GL+  AR+     
Sbjct: 120 TLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEM 179

Query: 90  --------------------------VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                     VFDEMP+R  V+W  +I  Y  +G  QE+ AL  
Sbjct: 180 KGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVR 239

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA-MDRNVFVGTALLDVYAK 182
            M+ + +   +  T+ S+L AC+   D+   + +H +ALK    + N+ VGTA++D+YAK
Sbjct: 240 EMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAK 299

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG I  A + F+ MP+RN V+W++M++G   + L   AL +F +      + +  T +SV
Sbjct: 300 CGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQ-MFKEAKPDDVTFTSV 358

Query: 243 ICACAGLAALIQGKQVHAVLCKTG---FGS--NMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           + AC+           H+ L   G   FG+  +++  +  V+ YA   C+VD        
Sbjct: 359 LSACS-----------HSGLVDQGCFYFGNLESVYGITPKVEHYA---CMVDL------- 397

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
                           R  R  E  IL  +M    + PNE    S+L +CS  G ++ G+
Sbjct: 398 --------------LGRAGRLEEAEILVREMP---IRPNEVVLGSLLGSCSIHGKLQLGE 440

Query: 358 SYFDLMVK 365
                +V+
Sbjct: 441 HLLQELVQ 448


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/569 (39%), Positives = 326/569 (57%), Gaps = 15/569 (2%)

Query: 44  ARERAPVRGKVCHAKIIGMGLN-NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSW 102
           A    P + K  HA ++  G +  ++L + +L N     G +  AR+VFDEM +  I  W
Sbjct: 19  ASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVV-IGDMCYARQVFDEMHKPRIFLW 77

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK-QLHVFA 161
           NT+   Y  N    E++ L+  M   G  P  EFT   V+ A +   D F C   LH   
Sbjct: 78  NTLFKGYVRNQLPFESLLLYKKMRDLGVRP-DEFTYPFVVKAISQLGD-FSCGFALHAHV 135

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
           +K        V T L+ +Y K G +S A  +FESM  ++ V W++ +A  VQ      AL
Sbjct: 136 VKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIAL 195

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
             F +     ++++ FT+ S++ AC  L +L  G++++    K     N+   ++ +DM+
Sbjct: 196 EYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMH 255

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
            KCG    A  +F  ++++NVV W+TMI G++ +  S E + LF  MQ  GL PN  T++
Sbjct: 256 LKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFL 315

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQH--NVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
            VLSACSH G+V +GK YF LMV+ +  N+ P   HY+CM+D+LGR+GL+ EAY+ I  M
Sbjct: 316 GVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKM 375

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P +    +WG+LL +C  +R++ L +  A  L    PD    H+LLSNIYAA  +W+ V 
Sbjct: 376 PVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVD 435

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKP 511
           + R  +R    KK  + S VE +GK        ++HP+   IY KL++++++++K+GY P
Sbjct: 436 KVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVP 495

Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
           +T    HDVE   K+  L HHSEKLA+ FGL+   PG PIR+MKNLR C DCH+F KF S
Sbjct: 496 DTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVS 555

Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +   E I+RD NRFHHF NG CSC +FW
Sbjct: 556 SLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 313/541 (57%), Gaps = 46/541 (8%)

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           ++ +I +Y  NG    ++ L+ +ML    +P S FT S++    +  ++     QLH+ A
Sbjct: 80  YSALIRAYARNGPFHHSIRLYTSMLNNNVSPVS-FTFSALF---SLLKNPSLGSQLHLHA 135

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS---------------- 205
                  +++VG  ++ +Y K G++  A +VF+ MP R+ VTW+                
Sbjct: 136 FLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSAC 195

Query: 206 ---------------SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
                          SMV G+ QN + ++AL  FR+ +  G+  ++ T+   I ACA L 
Sbjct: 196 ELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLG 255

Query: 251 ALIQGKQVHAVL--CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
                  +  +    + G GSN+F  S+L+DMY+KCG V +AY VF G++E NV  +++M
Sbjct: 256 VSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSM 315

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I GF+ H R+   + LF +M + G+ PN  T++ + +ACSH GMVE+G+  F  M + + 
Sbjct: 316 IVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYG 375

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           V P   HY+CM D+LGRAG + +A  L+  MP +    +WG+LL +   + N ++AEIA+
Sbjct: 376 VSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIAS 435

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------ 482
           + LF +EPDN GN+LLLS  YA   +W++V+R RKL+R+ +++K    SWVE K      
Sbjct: 436 RSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHE 495

Query: 483 ---GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
              G   HP I EI   L+ L++ +K  GY+P+     +D++D  K+ LL+ HSEKLAL 
Sbjct: 496 FFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALA 555

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           +GL+    G  I+IMKNLRIC DCH  M  AS++ GR+ IVRD  RFHHF NG+CSC +F
Sbjct: 556 YGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNF 615

Query: 600 W 600
           W
Sbjct: 616 W 616



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 134/321 (41%), Gaps = 58/321 (18%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           N N + +S   + L S  +   P  G   H      G  ND    N +I+ Y K G++  
Sbjct: 105 NNNVSPVSFTFSALFSLLKN--PSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDC 162

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM--------------------- 125
           ARKVFDEMP R +V+W  +I +Y  +G    A  LF+ +                     
Sbjct: 163 ARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMP 222

Query: 126 ---------LREGKTPYSEFTVSSVLCACAAK---------RDVFECKQLHVFALKAAMD 167
                    +RE      E T+   + ACA           R++ E  +           
Sbjct: 223 KKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRF-------GSG 275

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
            NVFVG+AL+D+Y+KCG + +A  VF+ M E N  ++SSM+ GF  +     A+ LF   
Sbjct: 276 SNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEM 335

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
              G++ N  T   +  AC+    + QG+Q+   +         +  S   D YA   C+
Sbjct: 336 LENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAM------KECYGVSPTADHYA---CM 386

Query: 288 VDAYFVFSGIEEKNVVLWNTM 308
            D     +G  EK + L  TM
Sbjct: 387 AD-LLGRAGHLEKALQLVQTM 406



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 124/284 (43%), Gaps = 46/284 (16%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLI---SDASRVFESMPERNEVTWSSMVAGF 211
           KQLH    +  + ++ +V T LL        I   +    +F  +   N   +S+++  +
Sbjct: 28  KQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSALIRAY 87

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
            +N  +  ++ L+       +    FT S++       +    G Q+H      GF +++
Sbjct: 88  ARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL---GSQLHLHAFLFGFVNDL 144

Query: 272 FAASSLVDMYAKCGC---------------------VVDAYF----------VFSGIEEK 300
           +  ++++ MY K G                      ++ AY           +F G+  K
Sbjct: 145 YVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVK 204

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++V W +M++G+S++A   + +  F KM++AG+  +E T +  +SAC+ +G+      Y 
Sbjct: 205 DMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV----SGYA 260

Query: 361 DLMVK-----QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           D + +     +     NVF  S +ID+  + G + EAY++   M
Sbjct: 261 DWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 313/535 (58%), Gaps = 12/535 (2%)

Query: 74   LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
            LI+ + +C  +  AR VFDEM    +VSW  ++ +   N   +E   LF  M  EG  P 
Sbjct: 578  LISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIP- 636

Query: 134  SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
             +FT+++ L  C     +   K +H    +  ++ ++ V  ALL++Y+ CG   +A   F
Sbjct: 637  DKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFF 696

Query: 194  ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
            E+M  R+ V+W+ M A + Q  L +EA++LFR  Q+ G++ ++ T S+ +    G A + 
Sbjct: 697  ETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVS 756

Query: 254  QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
             GK  H +  ++G  S++  A+ LV +YAKCG + +A  +F G  +  VVL N +I   +
Sbjct: 757  DGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALA 816

Query: 314  RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            +H  S E + +F KMQQ G+ P+  T +S++SAC H GMVE+G S F  M +   + P +
Sbjct: 817  QHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTL 876

Query: 374  FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
             HY+C +D+LGRAG +  A  +I  MPF+    +W SLL +C+   + EL E  A+++  
Sbjct: 877  EHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILE 936

Query: 434  MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEI--------KGKR 485
            ++P N+  H++LSNIY A  +W++    RK + D  VK     SW+EI         G R
Sbjct: 937  LDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDR 996

Query: 486  NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
            +HP+  EIY  L+KL   M++ GY  E +  L D ED  K++ L +HSE++A+ FGL+  
Sbjct: 997  SHPQTDEIYVVLDKLELLMRRAGY--EADKGL-DAEDELKEKALGYHSERIAIAFGLIAT 1053

Query: 546  CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             P   ++I+KNLR+CGDCH+  K+ S I GRE IVRD  RFHHF+NG+CSC D W
Sbjct: 1054 PPDTTLKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 208/427 (48%), Gaps = 23/427 (5%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +L    A LQSC       +GK  H  I   GL       N LIN Y +CG +  A  
Sbjct: 22  AADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHA 81

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           +F +M +R +VSW  +I +   +G    A ALF  ML E     + +T+ ++L ACA  R
Sbjct: 82  IFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141

Query: 150 DVFECKQLHVFALKAAMDRN----VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           D+   + +H    +  ++R       VG A++++YAKCG   DA  VF ++PE++ V+W+
Sbjct: 142 DLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWT 201

Query: 206 SMVAGFVQN-ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           +M   + Q    Y +AL +FR   +  L  N  T  + + AC    +L  G  +H++L +
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC---TSLRDGTWLHSLLHE 258

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVVLWNTMISGFSRHARSVEV 321
            G G +  A ++L++MY KCG    AY VF  +   +E ++V WN MIS      R  + 
Sbjct: 259 AGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDA 318

Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
           M +F +++  G+ PN  T I++L+A +  G+       F   + +   L +V   + +I 
Sbjct: 319 MAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIIS 378

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +  + G    A+ +   + +      W ++L +  + ++           FG +  N  +
Sbjct: 379 MYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKS-----------FG-KVVNTFH 426

Query: 442 HLLLSNI 448
           H+LL+ I
Sbjct: 427 HMLLAGI 433



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 216/428 (50%), Gaps = 17/428 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNND----TLTSNILINFYSKCGLISGARKV 90
           TL A L +CA  R    G+  HA I  +GL  +    TL  N +IN Y+KCG    A  V
Sbjct: 129 TLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAV 188

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGR-EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           F  +P++ +VSW  + G+Y    R   +A+ +F  ML +   P +  T  + L AC + R
Sbjct: 189 FLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAP-NVITFITALGACTSLR 247

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE---VTWSS 206
           D      LH    +A +  +   G AL+++Y KCG    A  VF++M  R E   V+W++
Sbjct: 248 D---GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNA 304

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA-LIQGKQVHAVLCKT 265
           M++  V+   + +A+ +FRR ++ G+  N  T+ +++ A A         ++ H  + ++
Sbjct: 305 MISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWES 364

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMIL 324
           G+  ++   ++++ MYAKCG    A+ VF  I  K +V+ WNTM+          +V+  
Sbjct: 365 GYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNT 424

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           F  M  AG+ PN+ ++I++L+ACS+   ++ G+    L++ +          + ++ + G
Sbjct: 425 FHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYG 484

Query: 385 RAGLIHEAYDLILNMPFDATASM-WGSLL-ASCRNYRNLELAEIAAKQL-FGMEPDNAGN 441
           + G I EA  +   MP  + + + W  +L A  +N R+ E      + L  G+ PD    
Sbjct: 485 KCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSF 544

Query: 442 HLLLSNIY 449
             +LS+ Y
Sbjct: 545 TSVLSSCY 552



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 193/361 (53%), Gaps = 9/361 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEMP- 95
           A L +C+   A   G+  H+ I+    +  ++  + +L++ Y KCG I+ A  VF EMP 
Sbjct: 442 AILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPL 501

Query: 96  -QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+WN ++G+Y  N R +EA    + ML+ G  P    + +SVL +C   +   E 
Sbjct: 502 PSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLP-DALSFTSVLSSCYCSQ---EA 557

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + L +  L++   R+  + TAL+ ++ +C  +  A  VF+ M   + V+W++MV+   +N
Sbjct: 558 QVLRMCILESGY-RSACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAEN 616

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             ++E   LFRR Q+ G+  ++FT+++ +  C     L  GK +HA + + G  +++   
Sbjct: 617 RDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVE 676

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+ CG   +A   F  ++ +++V WN M + +++   + E ++LF  MQ  G+ 
Sbjct: 677 NALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVK 736

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P++ T+ + L+      +V  GK  F  +  +  +  +V   + ++ +  + G + EA  
Sbjct: 737 PDKLTFSTTLNVSGGSALVSDGK-LFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAIS 795

Query: 395 L 395
           L
Sbjct: 796 L 796



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 5/278 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL  TL +C        GK+ HA +  +GL  D    N L+N YS CG    A   F+ M
Sbjct: 640 TLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETM 699

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN +  +Y   G  +EAV LF +M  EG  P  + T S+ L        V + 
Sbjct: 700 KARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKP-DKLTFSTTLNVSGGSALVSDG 758

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K  H  A ++ +D +V V T L+ +YAKCG + +A  +F    +   V  ++++    Q+
Sbjct: 759 KLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQH 818

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG--SNMF 272
              EEA+ +F + Q  G+  +  T+ S+I AC G A +++      +  K  FG    + 
Sbjct: 819 GFSEEAVKMFWKMQQEGVRPDVATLVSIISAC-GHAGMVEEGCSSFLTMKEYFGISPTLE 877

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMI 309
             +  VD+  + G +  A  +   +  E N ++W +++
Sbjct: 878 HYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/622 (35%), Positives = 344/622 (55%), Gaps = 41/622 (6%)

Query: 19  SAIASASANANATELSTL--QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILIN 76
           S     ++N+N   L +L  +  +    R R   +    HA++I  G + D      L+ 
Sbjct: 30  SPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLR 89

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
             SKC  I  A ++F       +  +  +I  + ++G   EA+ L+  ML E   P   +
Sbjct: 90  SCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILP-DNY 148

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            ++S+L AC ++  + E +++H  ALK     N  V   ++++Y KCG + DA RVFE M
Sbjct: 149 LMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEM 208

Query: 197 PE------------------------------RNEVTWSSMVAGFVQNELYEEALILFRR 226
           PE                              ++ V W++M+ GFV+NE    AL  FR 
Sbjct: 209 PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRG 268

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            Q   +  N+FTI  V+ AC+ L AL  G+ VH+ + K     N+F  ++L++MY++CG 
Sbjct: 269 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 328

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + +A  VF  +++++V+ +NTMISG S + +S + + LF  M    L P   T++ VL+A
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNA 388

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CSH G+V+ G   F  M + + V P + HY CM+D+LGR G + EAYDLI  M       
Sbjct: 389 CSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHI 448

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           M G+LL++C+ ++NLEL E  AK+L      ++G ++LLS++YA++ +W+E A+ R  ++
Sbjct: 449 MLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMK 508

Query: 467 DSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
           ++ ++KE   S +E+         G   HP+   IY KLE+L   ++  GY PE E  L 
Sbjct: 509 EAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQ 568

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           D+ED  K+  L  HSE+LA+ +GL+   P   IR+MKNLR+C DCHS +K  ++I  R+ 
Sbjct: 569 DIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKI 628

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           +VRD NRFH+F NG+CSC D+W
Sbjct: 629 VVRDRNRFHYFENGACSCGDYW 650


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/577 (36%), Positives = 334/577 (57%), Gaps = 15/577 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST    +  CA  +     +  H+ ++  G ++       L++ Y+K G +  A  VF  
Sbjct: 259 STYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLL 318

Query: 94  MP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           M   + +VSW  +I     NG    A ALF  M  +G  P ++ T S++L    A     
Sbjct: 319 MSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAP-NDLTYSTILTVSEASFP-- 375

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
              Q+H   +K   +    VGTAL+  Y+K     +A  +F+ + +++ V+WS+M+  + 
Sbjct: 376 --PQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYA 433

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHAVLCKTGFGSNM 271
           Q      A   F +  + GL+ N+FTISS I ACA  AA +  G+Q HA+  K      +
Sbjct: 434 QAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDAL 493

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             +S+LV MYA+ G + +A  VF    +++++ WN+M+SG+++H  S + + +F +M+  
Sbjct: 494 CVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVE 553

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
           G+  +  T++SV+  C+H G+VE+G+ YFDLMV+ + + P + HY+CM+D+  RAG + E
Sbjct: 554 GIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDE 613

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
              LI  MPF A  ++W +LL +CR ++N+EL ++AA++L  +EP ++  ++LLSNIY+A
Sbjct: 614 TMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSA 673

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEE 503
             +W+E    RKL+   +V+KE   SW++IK K        ++HP   +IY+KL  +  +
Sbjct: 674 AGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAK 733

Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           +K+ GY P+T    HDV + +K+ +L  HSE+LAL FGL+   P  P+ I KNLR+ GD 
Sbjct: 734 LKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDG 793

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H+ MK  S I  RE ++RD  RFHHF +G CSC DFW
Sbjct: 794 HTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 180/381 (47%), Gaps = 9/381 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L   A +     G+  HA+ I  G  +     N L+N Y+KCGL+  AR VF  M
Sbjct: 159 TFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRM 218

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWNT++     NGR+ EA+ LF +  R   T  +E T S+V+  CA  + +   
Sbjct: 219 ETRDMVSWNTLMAGLVLNGRDLEALQLFHDS-RSSITMLTESTYSTVINLCANLKHLGLA 277

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQ 213
           +QLH   LK        V TAL+D Y K G +  A  VF  M   +N V+W++M+ G +Q
Sbjct: 278 RQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQ 337

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N     A  LF R +  G+  N  T S+++             Q+HA + KT +      
Sbjct: 338 NGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFP----PQIHAQVIKTNYECTPTV 393

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+  Y+K     +A  +F  I++K+VV W+ M++ +++          F KM   GL
Sbjct: 394 GTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGL 453

Query: 334 HPNEQTYISVLSAC-SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            PNE T  S + AC S    V+ G+ +  + +K H     +   S ++ +  R G I  A
Sbjct: 454 KPNEFTISSAIDACASPAAGVDLGRQFHAISIK-HRCHDALCVSSALVSMYARKGSIENA 512

Query: 393 YDLILNMPFDATASMWGSLLA 413
              +     D     W S+L+
Sbjct: 513 -QCVFERQTDRDLLSWNSMLS 532



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 164/314 (52%), Gaps = 7/314 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEM 94
           L   ++ C      V GK  HA  +  G ++ D      L++ Y     +   RKVF+ M
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGM 117

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +V+W +++  Y   G   + ++LF  M  EG  P + FT SSVL   A++  V   
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWP-NPFTFSSVLSMVASQGMVDLG 176

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H  ++K      VFV  +L+++YAKCGL+ +A  VF  M  R+ V+W++++AG V N
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLN 236

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL LF  ++       + T S+VI  CA L  L   +Q+H+ + K GF S     
Sbjct: 237 GRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM 296

Query: 275 SSLVDMYAKCGCV---VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           ++L+D Y K G +   +D + + SG   +NVV W  MI G  ++        LF +M++ 
Sbjct: 297 TALMDAYNKAGQLDKALDVFLLMSG--SQNVVSWTAMIDGCIQNGDIPLAAALFSRMRED 354

Query: 332 GLHPNEQTYISVLS 345
           G+ PN+ TY ++L+
Sbjct: 355 GVAPNDLTYSTILT 368



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 171/341 (50%), Gaps = 21/341 (6%)

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           + P R    W T+  S T  G   +A+  F++  R          +  ++  C +  D  
Sbjct: 16  KFPTR--TPW-TMPFSTTWQGFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRV 72

Query: 153 ECKQLHVFALKAAMDR-NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
             KQLH   ++   D  ++ VGT+L+D+Y     + D  +VFE M +RN VTW+S++ G+
Sbjct: 73  LGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGY 132

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
           +Q  +  + + LF R +  G+  N FT SSV+   A    +  G+ VHA   K G  S +
Sbjct: 133 IQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTV 192

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F  +SL++MYAKCG V +A  VF  +E +++V WNT+++G   + R +E + LF   + +
Sbjct: 193 FVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSS 252

Query: 332 GLHPNEQTYISVLSACS---HIGMVEKGKSYFDLMVKQHNVLPNVFH-----YSCMIDIL 383
                E TY +V++ C+   H+G+  +  S         +VL + FH      + ++D  
Sbjct: 253 ITMLTESTYSTVINLCANLKHLGLARQLHS---------SVLKHGFHSYGNVMTALMDAY 303

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
            +AG + +A D+ L M        W +++  C    ++ LA
Sbjct: 304 NKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLA 344


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 325/575 (56%), Gaps = 22/575 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG-LISGARKVFDE 93
           T    L +C+   A   GK  H++++  GL ND    N L++ Y KC  +I  A + F  
Sbjct: 319 TYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRG 378

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +    ++SW ++I  ++ +G E+E++ +F  M   G  P S FT+S++L AC   + + +
Sbjct: 379 IASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNS-FTLSTILGACGTIKSLTQ 437

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            ++LH + +K   D +V VG AL+D YA  G++ DA  V   M  R+ +T++S+     Q
Sbjct: 438 TRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQ 497

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
              +E AL +        +  + F+++S + A AG+  +  GKQ+H    K+G GS +  
Sbjct: 498 TGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISV 557

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           ++ LVD+Y KCGC+ DA+  F  I E + V WN +I G + +      +  FE M+ AG+
Sbjct: 558 SNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGV 617

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T + VL ACSH G+V+ G  YF  M ++H + P + HY C++D+LGRAG + EA 
Sbjct: 618 EPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAM 677

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           ++I  MPF   A ++ +LL +C+ + N+ L E  A+Q   ++P +   ++LL+N+Y  + 
Sbjct: 678 NVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSG 737

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           R E   + R+++R+  V+K   +SW+E +        G  +HP+I +I+ K+E L+ + +
Sbjct: 738 RSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFR 797

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
             G               ++   L HHSEKLA+ FGL+   P  PIRI+KN+RIC DCH 
Sbjct: 798 NQGIW------------YQENRALAHHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHD 845

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           F+   +R+  RE IVRD NRFH F  G CSC  +W
Sbjct: 846 FIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 146/438 (33%), Positives = 226/438 (51%), Gaps = 16/438 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVC-HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           E S L+  +  C      VR  +C H+ II MG   D   SN L++ Y KC  ++ AR++
Sbjct: 15  EYSLLKDIVSFCNSR--SVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQL 72

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FDEMP R + SW  ++ +Y   G  +EA+ LF +ML  G+ P +EFT+S+ L +C+A R+
Sbjct: 73  FDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYP-NEFTLSTALRSCSALRE 131

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
                +      K+  D N  +G+AL+D Y+KCG   +A RVFE M   + V+W+ MV+ 
Sbjct: 132 FNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSS 191

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           FV+   + +AL L+ R    G+  N+FT   ++ A + L  L  GK VHA L       N
Sbjct: 192 FVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIELN 250

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
           +   ++LVDMY KC  + DA  V     E +V LW  +ISGF++  +  E +  F +M+ 
Sbjct: 251 LVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMET 310

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR-AGLI 389
           +G+ PN  TY  +L+ACS I  ++ GK     +V    +  +V   + ++D+  + + +I
Sbjct: 311 SGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMA-GLENDVSVGNSLVDMYMKCSNMI 369

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI---AAKQLFGMEPDNAGNHLLLS 446
            +A      +      S W SL+A    +  LE   I    A Q  G+ P    N   LS
Sbjct: 370 EDAVRAFRGIASPNVIS-WTSLIAGFSEH-GLEEESIKVFGAMQGVGVRP----NSFTLS 423

Query: 447 NIYAANRRWEEVARARKL 464
            I  A    + + + RKL
Sbjct: 424 TILGACGTIKSLTQTRKL 441



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 193/360 (53%), Gaps = 4/360 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+SC+  R    G    A +   G +++ +  + LI+FYSKCG    A +VF+ M
Sbjct: 118 TLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYM 177

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               IVSW  ++ S+   G   +A+ L+  M++ G  P +EFT   +L A ++   +   
Sbjct: 178 NNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAP-NEFTFVKLLAA-SSFLGLNYG 235

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H   +   ++ N+ + TAL+D+Y KC  I DA +V +   E +   W+++++GF Q+
Sbjct: 236 KLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQS 295

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             + EA+  F   +  G+  N FT S ++ AC+ + AL  GKQ+H+ +   G  +++   
Sbjct: 296 LKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVG 355

Query: 275 SSLVDMYAKCGCVV-DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           +SLVDMY KC  ++ DA   F GI   NV+ W ++I+GFS H    E + +F  MQ  G+
Sbjct: 356 NSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGV 415

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T  ++L AC  I  + + +     ++K +N   +V   + ++D     G++ +A+
Sbjct: 416 RPNSFTLSTILGACGTIKSLTQTRKLHGYIIK-NNADNDVVVGNALVDAYAGLGMVDDAW 474


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 314/574 (54%), Gaps = 48/574 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T     ++C    A   G   HA +I  GL+ D    +  I  Y   G + GAR++  E 
Sbjct: 132 TYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGED 191

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               ++ +N +I  Y   G  + A  LF +M                             
Sbjct: 192 GNSDVICFNAMIDGYLKCGEVEAAKELFWSM----------------------------- 222

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                       D+NV     ++   AKCG+I +A  +F  M E+NE++WS+M+ G+++ 
Sbjct: 223 -----------EDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKG 271

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
             Y+EAL +F   Q   +   +F +SSV+ ACA L AL QG+ +HA +       +    
Sbjct: 272 GYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLG 331

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG +  A+ VF  +E+K V  WN MI G   H R+ + + LF KMQ+    
Sbjct: 332 TALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFR 391

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN  T + VLSAC+H GMV++G   F+ M + + + P + HY C++D+LGRAGL+ EA +
Sbjct: 392 PNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEE 451

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           ++ +MP + +A++WG+LL +CR + ++EL E   K L  +EP N+G + LLSNIYA   R
Sbjct: 452 VMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGR 511

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++VA  RKL+++  VK     S ++          G  +HP++  IY  L+ +++ +K 
Sbjct: 512 WDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKM 571

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
            G+ P T   L D+E+  K+  L +HSEKLA+ FGL+   PG  I ++KNLR+C DCHS 
Sbjct: 572 EGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSA 631

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S++  RE IVRD  R+HHF  G+CSC DFW
Sbjct: 632 FKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 14/273 (5%)

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGL--ISDASRVFESMPERNEVTWSSMVAGFV 212
           KQ+H  AL+    ++ +V   L+  YA      ++ A +VFE +P  N   ++ ++ G +
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN    +A+  + +  +     N+FT  ++  AC    A  +G QVHA + K G   ++ 
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             S+ + MY   G V  A  +       +V+ +N MI G+ +         LF  M+   
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMED-- 224

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              N  ++  ++S  +  GM+E+ +  F+ M ++     N   +S MID   + G   EA
Sbjct: 225 --KNVGSWNVMVSGMAKCGMIEEARELFNEMKEK-----NEISWSAMIDGYIKGGYYKEA 277

Query: 393 YDLILNMPFDATAS---MWGSLLASCRNYRNLE 422
            ++   M  +       +  S+LA+C N   L+
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANLGALD 310


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 346/600 (57%), Gaps = 25/600 (4%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF 77
           ++ +AS++ N  A E + L A LQ+C    A  +    H  I+ +GL+N+ L   +L  F
Sbjct: 15  NNVLASSTPNPRAPEQNCL-ALLQAC---NALPKLTQIHTHILKLGLHNNPL---VLTKF 67

Query: 78  YSKCGLISG----ARKVFD-EMPQRCIVSW--NTIIGSYTTNGREQE-AVALFINMLREG 129
            S   LI      A  +F  E   R   ++  NT+I +Y   G  ++ A+AL+  ML + 
Sbjct: 68  ASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDA 127

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC-GLISD 188
             P ++FT   VL ACA    +   + +H   +K   D ++ V   ++ +Y+ C G I+ 
Sbjct: 128 ILP-NKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINS 186

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A +VF+ MP+ + VTWS+M+ G+ +     EA+ LFR  Q+  +  ++ T+ S++ AC  
Sbjct: 187 ARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTD 246

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           L AL  GK + A + +      +  +++L+DM+AKCG +  A  +F  + EK +V W ++
Sbjct: 247 LGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSV 306

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I G + H R  E   LFE+M  +G+ P++  +I +LSACSH G+VE+G+ YF  M+K++ 
Sbjct: 307 IVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYK 366

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           ++P + HY CM+D+  R GL+ EA + + NMP +    +  +L+++CR +   +L E   
Sbjct: 367 LVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKIT 426

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK------ 482
           K L   EP +  N++LLSNIYA    WE+  + R+++    +KK    + +EI       
Sbjct: 427 KLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEF 486

Query: 483 --GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTF 540
             G ++H +  EIY  ++++  EMKK GY+P T   L D+ +  K++ L  HSEKLA+ F
Sbjct: 487 VAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAF 546

Query: 541 GLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           GL+   PG PIRI+KNLR+C DCHS  KF S+I  RE I+RD NRFHHF +G CSC DFW
Sbjct: 547 GLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 330/560 (58%), Gaps = 24/560 (4%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY----TT 111
           H  +I  GL++D    + +I+ Y+K G +  A  +F  + +  +V +NT+I  +    T 
Sbjct: 235 HGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETV 294

Query: 112 NGRE--QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
            G+E   EA+ L+  +   G  P +EFT SSVL AC     +   KQ+H   +K     +
Sbjct: 295 IGKEVASEALTLYSEVQSRGMQP-TEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQED 353

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            F+G+AL+D+Y   G + D  R F S P+ + VTW++MV+G VQNEL+E+AL LF  +  
Sbjct: 354 DFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLG 413

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            GL+ + FTISSV+ ACA LA    G+Q+     K+GF       +S V MYA+ G V  
Sbjct: 414 AGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDA 473

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A   F  +E  +VV W+ +IS  ++H  + + +  F++M  A + PNE T++ VL+ACSH
Sbjct: 474 ATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSH 533

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+V++G  Y++ M K + + P + H +C++D+LGRAG + +A   I N  F A   +W 
Sbjct: 534 GGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWR 593

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLLASCR +R+LE  ++ A ++  +EP ++ ++++L N+Y         ++ R L++   
Sbjct: 594 SLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRG 653

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           VKKE   SW+E+K        G ++HP  + IY+KLE+++  ++KL           D E
Sbjct: 654 VKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEKLATT--------DTE 705

Query: 522 DS-RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
            S R+Q L+  HSEKLA+  G++ L    PIR+MKNLR+C DCHS MK  S+   RE I+
Sbjct: 706 ISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIIL 765

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD  RFHHF +GSCSC D+W
Sbjct: 766 RDPIRFHHFRDGSCSCADYW 785



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 196/370 (52%), Gaps = 17/370 (4%)

Query: 43  CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSW 102
           C+R      G+  HA  I  GL++    SN L++ YSKCG +  AR+VFD   +R  VSW
Sbjct: 119 CSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSW 178

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD--VFECKQLHVF 160
           N+++  Y   G  +E V +F  M+R G    + F + SV+  C+ + D  +   + +H  
Sbjct: 179 NSLVSGYVRAGAREEMVRVFA-MMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGC 237

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF------VQN 214
            +KA +D +VF+ +A++D+YAK G + +A+ +F S+ E N V +++M+AGF      +  
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E+  EAL L+   Q  G++  +FT SSV+ AC     L  GKQ+H  + K  F  + F  
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S+L+D+Y   GC+ D +  F    + ++V W  M+SG  ++    + + LF +   AGL 
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLK 417

Query: 335 PNEQTYISVLSACSHIGMVEKG--------KSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           P+  T  SV++AC+ + +   G        KS FD      N   +++  S  +D   R 
Sbjct: 418 PDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRR 477

Query: 387 GLIHEAYDLI 396
               E++D++
Sbjct: 478 FQEMESHDVV 487



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 190/352 (53%), Gaps = 11/352 (3%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N L+  Y + G    AR++ DEMP+R  VS+N +I +Y+  G    ++       R G  
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAG-V 105

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
               F+ ++ L AC+    +   + +H  A+   +   VFV  +L+ +Y+KCG + +A R
Sbjct: 106 DVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARR 165

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL-- 249
           VF+   ER++V+W+S+V+G+V+    EE + +F   +  G+  N F + SVI  C+G   
Sbjct: 166 VFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGD 225

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             +   + VH  + K G  S++F  S+++DMYAK G +V+A  +F  ++E NVV++NTMI
Sbjct: 226 GTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMI 285

Query: 310 SGFSRHARSV------EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +GF R    +      E + L+ ++Q  G+ P E T+ SVL AC+  G +E GK     +
Sbjct: 286 AGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQV 345

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           +K +    + F  S +ID+   +G + + +    + P     + W ++++ C
Sbjct: 346 IK-YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVT-WTAMVSGC 395



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 20/282 (7%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           ++F+   LL  Y + G    A R+ + MP RN V+++ ++  + +  L   +L    RA+
Sbjct: 42  SLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARAR 101

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G++ ++F+ ++ + AC+    L  G+ VHA+    G  S +F ++SLV MY+KCG + 
Sbjct: 102 RAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMG 161

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A  VF   EE++ V WN+++SG+ R     E++ +F  M++ G+  N     SV+  CS
Sbjct: 162 EARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCS 221

Query: 349 HIGMVEKGKSYFDLMVKQHNVL------PNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
                 +G    D+    H  +       +VF  S MID+  + G + EA  L  ++  +
Sbjct: 222 G-----RGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ-E 275

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLF--------GMEP 436
               M+ +++A       +   E+A++ L         GM+P
Sbjct: 276 PNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQP 317



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 3/180 (1%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T+ + + +CA       G+         G +  T+  N  ++ Y++ G +  A + F
Sbjct: 419 DLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRF 478

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EM    +VSW+ +I  +  +G  ++A+  F  M+ + K   +E T   VL AC+    V
Sbjct: 479 QEMESHDVVSWSAVISCHAQHGCARDALHFFDEMV-DAKVVPNEITFLGVLTACSHGGLV 537

Query: 152 FE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR-VFESMPERNEVTWSSMVA 209
            E  +          +   +   T ++D+  + G ++DA   +  S+   + V W S++A
Sbjct: 538 DEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLA 597


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/507 (40%), Positives = 292/507 (57%), Gaps = 44/507 (8%)

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161
           WN+ + +        +A+ LF   LR+       FT SSVL AC    D+   + LH   
Sbjct: 129 WNSCLKALAEGDSPIDAIMLFYR-LRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH--- 184

Query: 162 LKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
                            V  K G  S                W+SM+AG+VQ    +EA+
Sbjct: 185 ----------------GVVEKVGFRS----------------WTSMIAGYVQCGKAKEAI 212

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            LF + +  G++ N+ T+ +V+ ACA L AL  G ++H    + GF  N+  +++L+DMY
Sbjct: 213 HLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMY 272

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
            KCGC+ +A  VF  +EE+ VV W+ MI G + H R+ E + LF  M Q G+ PN  T+I
Sbjct: 273 VKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFI 332

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
            +L ACSH+G++ +G+ +F  M + + ++P + HY CM+D+L RAGL+HEA++ ILNMP 
Sbjct: 333 GLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM 392

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461
                +WG+LL +CR ++N+E+AE A K L  ++P N G +++LSNIYA   RWE+ AR 
Sbjct: 393 KPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARV 452

Query: 462 RKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513
           RK ++D +VKK    S + +         G+ +HP   +I+ + E+L+EEM+  GY P T
Sbjct: 453 RKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNT 512

Query: 514 EHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRI 573
              L D+E+  K + +  HSEKLAL FGLM      PIRIMKNLRIC DCHS  K  S I
Sbjct: 513 SVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAI 572

Query: 574 AGRETIVRDLNRFHHFTNGSCSCWDFW 600
             RE +VRD NRFH F + SCSC D+W
Sbjct: 573 VNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVF 160
           SW ++I  Y   G+ +EA+ LF  M  E     +E TV +VL ACA    +    ++H +
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKM-EEAGVKCNEVTVVAVLAACADLGALDLGMRIHEY 252

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220
           + +    RNV +   L+D+Y KCG + +A +VFE M ER  V+WS+M+ G   +   EEA
Sbjct: 253 SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEA 312

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVD 279
           L LF     +G+E N  T   ++ AC+ +  + +G++  A + +  G    +     +VD
Sbjct: 313 LRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVD 372

Query: 280 MYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
           + ++ G + +A+ F+ +   + N V+W  ++ G  R  ++VE+
Sbjct: 373 LLSRAGLLHEAHEFILNMPMKPNGVVWGALL-GACRVHKNVEM 414



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ A L +CA   A   G   H      G   +   SN LI+ Y KCG +  A KVF+EM
Sbjct: 229 TVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 288

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW+ +IG    +GR +EA+ LF +M + G  P +  T   +L AC+    + E 
Sbjct: 289 EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEP-NGVTFIGLLHACSHMGLISEG 347

Query: 155 KQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMPER-NEVTWSSM 207
           ++       A+M R+  +         ++D+ ++ GL+ +A     +MP + N V W ++
Sbjct: 348 RRFF-----ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGAL 402

Query: 208 VAG 210
           +  
Sbjct: 403 LGA 405


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/527 (36%), Positives = 318/527 (60%), Gaps = 10/527 (1%)

Query: 84  ISGARKVFDEMPQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
           +S A KVF ++ +   +  WNT+I  Y   G    AV+L+  M   G       T   +L
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            A     DV   + +H   +++     ++V  +LL +YA CG ++ A +VF+ MPE++ V
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
            W+S++ GF +N   EEAL L+    + G++ + FTI S++ ACA + AL  GK+ H  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYM 248

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G   N+ +++ L+D+YA+CG V +A  +F  + +KN V W ++I G + +    E +
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAI 308

Query: 323 ILFEKMQ-QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
            LF+ M+ + GL P E T++ +L ACSH GMV++G  YF  M +++ + P + H+ CM+D
Sbjct: 309 ELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVD 368

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +L RAG + +AY+ IL MP      +W +LL +C  + + +LAE+A  ++  +EP+++G+
Sbjct: 369 LLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGD 428

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEI 493
           ++LLSN+YA+ +RW +V + RK +    V+K    S VE+         G ++HP+   I
Sbjct: 429 YVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMI 488

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           Y+KL+++ + ++  GY P+  +   DVE+  K+  L++HSEK+A+ F L+      PIR+
Sbjct: 489 YAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRV 548

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KNL++C DCH  +K  S++  RE +VRD +RFHHF NGSCSC D+W
Sbjct: 549 VKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 162/302 (53%), Gaps = 7/302 (2%)

Query: 48  APVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           A VR G+  H+ +I  G  +     N L++ Y+ CG ++ A KVFD+MP++ +V+WN++I
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVI 194

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
             +  NG+ +EA+AL+  M  +G  P   FT+ S+L ACA    +   K+ HV+ +K  +
Sbjct: 195 NGFAENGKPEEALALYTEMDLKGIKP-DGFTIVSLLSACAKIGALTLGKRFHVYMIKVGL 253

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
            RN+     LLD+YA+CG + +A  +F+ M ++N V+W+S++ G   N L +EA+ LF+ 
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKN 313

Query: 227 AQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKC 284
            +   GL   + T   ++ AC+    + +G +    + +       +     +VD+ A+ 
Sbjct: 314 MESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARA 373

Query: 285 GCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           G V  AY ++     + NVV+W T++   + H  S   +    +M+   L PN      +
Sbjct: 374 GQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDS--DLAELARMKILQLEPNHSGDYVL 431

Query: 344 LS 345
           LS
Sbjct: 432 LS 433



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA+  A   GK  H  +I +GL  +  +SN+L++ Y++CG +  A+ +FDEM
Sbjct: 224 TIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSEFTVSSVLCACA---AKRD 150
             +  VSW ++I     NG  +EA+ LF NM  +EG  P  E T   +L AC+     ++
Sbjct: 284 VDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLP-CEITFVGILYACSHCGMVKE 342

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            FE       + +  ++  +     ++D+ A+ G +  A      MP + N V W +++ 
Sbjct: 343 GFE--YFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLG 400

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQ 236
               +   +  L    R ++L LE N 
Sbjct: 401 ACTVHG--DSDLAELARMKILQLEPNH 425


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 329/558 (58%), Gaps = 12/558 (2%)

Query: 52   GKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
            G+  H  +I   ++ +       L+  Y+  G +    KVF+ + ++ I+SWNT+I  +T
Sbjct: 518  GRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFT 577

Query: 111  TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
             NG+ +EA+ LF+ M  +G  P   ++++S L AC          Q+H + +K   + N 
Sbjct: 578  RNGQPEEALLLFVQMQTQGLMP-DSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFND 635

Query: 171  FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            FV  AL+D+YAKCG +  A+++FE + E++ VTW+SM+ GF QN    EA+ LF +  + 
Sbjct: 636  FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMN 695

Query: 231  GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
             ++ ++ T  SVI AC+ L  L +GK VH  L   G   + +  ++L DMY+KCG +  A
Sbjct: 696  CVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMA 755

Query: 291  YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
            + VF  + E+++V W+ MI+G+  H +    + LF +M  +G+ PN+ T++ +LSACSH 
Sbjct: 756  HGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHA 815

Query: 351  GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
            G VE+GK YF+ M  +  V P   H++CM+D+L RAG ++ AY +I ++PF A +S+WG+
Sbjct: 816  GAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGA 874

Query: 411  LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
            LL  CR ++ +++ +   K L  ++  + G + LLSNIYA    W++  + R +++   +
Sbjct: 875  LLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGL 934

Query: 471  KKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
            +K    S +EI         G  +H +  +IY  LE     +    Y  E ++ +     
Sbjct: 935  RKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSK 994

Query: 523  SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
              K+  ++ HSEKLA+ FG++   PG  +RI KNLR+C DCHSF K AS+I GRE I+RD
Sbjct: 995  FNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRD 1054

Query: 583  LNRFHHFTNGSCSCWDFW 600
            LNRFH F NGSCSC D+W
Sbjct: 1055 LNRFHCFRNGSCSCNDYW 1072



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 208/411 (50%), Gaps = 56/411 (13%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA +   GL+     S  LI  Y++ G+   +++VFD  P+     W  +I  Y   G  
Sbjct: 368 HAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFF 427

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD------------------------- 150
           +EAV+L+  M+ + +T  S F   SVL AC+   D                         
Sbjct: 428 EEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAV 487

Query: 151 ---------------------------VFECKQLHVFALKAAMDRNV-FVGTALLDVYAK 182
                                      V E + +H F ++ AMD  + F+G AL+++YA 
Sbjct: 488 EPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYAD 547

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
            G + D  +VFE++ E+  ++W+++++ F +N   EEAL+LF + Q  GL  + ++++S 
Sbjct: 548 TGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASS 607

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           + AC  ++    G Q+H  + KTG   N F  ++L+DMYAKCG V  A  +F  I+EK++
Sbjct: 608 LSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSL 666

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WN+MI GFS++  SVE + LF++M    +  ++ T++SV+ ACSH+G +EKGK     
Sbjct: 667 VTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHK 726

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           ++  + +  + +  + + D+  + G +  A+ +   M   +  S W  ++A
Sbjct: 727 LI-MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVS-WSVMIA 775



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 56/291 (19%)

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
           QLH       + R+    T L++ YA+ G+   + RVF++ P+ +   W  ++  +V   
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 425

Query: 216 LYEEALILFRR-------------------------------------------AQVL-- 230
            +EEA+ L+                                             +Q++  
Sbjct: 426 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISE 485

Query: 231 GLEYNQFTISSVICACAGLAAL--------IQGKQVHAVLCKTGFGSNM-FAASSLVDMY 281
            +E +  T+ SV  AC+ L +L         +G+ VH  + +      + F   +L+++Y
Sbjct: 486 AVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELY 545

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           A  G + D + VF  I+EK ++ WNT+IS F+R+ +  E ++LF +MQ  GL P+  +  
Sbjct: 546 ADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLA 605

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           S LSAC  I   + G      ++K  N   N F  + +ID+  + G +H A
Sbjct: 606 SSLSACGTISFSQLGAQIHGYIIKTGNF--NDFVQNALIDMYAKCGFVHSA 654



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + +Q+C+      +GK  H K+I  GL  D+     L + YSKCG +  A  VFD M
Sbjct: 703 TFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRM 762

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R IVSW+ +I  Y  +G+    ++LF  ML  G  P ++ T   +L AC+    V E 
Sbjct: 763 SERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKP-NDITFMHILSACSHAGAVEEG 821

Query: 155 K----QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           K     +  F ++   D        ++D+ ++ G ++ A ++  S+P   N   W +++ 
Sbjct: 822 KLYFNSMSEFGVEPKHDHFA----CMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLN 877

Query: 210 G 210
           G
Sbjct: 878 G 878


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/595 (35%), Positives = 339/595 (56%), Gaps = 56/595 (9%)

Query: 47  RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           R     K  HA I+ +G+      +N L+N Y KCG  S A +VFDEMP R  ++W +++
Sbjct: 85  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL 144

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
            +        + +++F ++         +F  S+++ ACA    +   +Q+H   + +  
Sbjct: 145 TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY 204

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
             +  V ++L+D+YAKCGL++ A  VF+S+  +N ++W++MV+G+ ++   EEAL LFR 
Sbjct: 205 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 264

Query: 227 AQVL-----------------GLE-YNQFT--------------ISSVICACAGLAALIQ 254
             V                  GLE ++ FT              +SS++ ACA LAA I 
Sbjct: 265 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIA 324

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           G+QVH               ++L+DMYAKC  V+ A  +FS +  ++VV W ++I G ++
Sbjct: 325 GRQVHG--------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQ 370

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           H ++ + + L++ M   G+ PNE T++ ++ ACSH+G VEKG+  F  M K + + P++ 
Sbjct: 371 HGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQ 430

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC-RNYRNLELAEIAAKQLFG 433
           HY+C++D+LGR+GL+ EA +LI  MPF      W +LL++C R  R      IA   +  
Sbjct: 431 HYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSS 490

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKR 485
            +  +   ++LLSNIYA+   W +V+ AR+ + + EV+K+   S VE++        G+ 
Sbjct: 491 FKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGET 550

Query: 486 NHPRIAEIYSKLEKLVEEMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMC 544
           +HP   +I+  L+KL EEM+ + GY P+T   LHD+++  K++LL  HSE+ A+ +GL+ 
Sbjct: 551 SHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLK 610

Query: 545 LCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
             PG PIRI+KNLR+CGDCH  +K  S I  RE IVRD  R+HHF  G CSC DF
Sbjct: 611 AVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 328/553 (59%), Gaps = 14/553 (2%)

Query: 57  AKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
           A I+G+ ++N     + L++ Y K G    A+ V D + ++ +V    +I  Y+  G + 
Sbjct: 191 AVILGLEVSN-VFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDT 249

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           EAV  F +ML E   P +E+T +SVL +C   +D+   K +H   +K+  +  +   T+L
Sbjct: 250 EAVKAFQSMLVEKVQP-NEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSL 308

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           L +Y +C L+ D+ RVF+ +   N+V+W+S+++G VQN   E ALI FR+     ++ N 
Sbjct: 309 LTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNS 368

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           FT+SS +  C+ LA   +G+Q+H ++ K GF  + +A S L+D+Y KCGC   A  VF  
Sbjct: 369 FTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDT 428

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           + E +V+  NTMI  ++++    E + LFE+M   GL PN+ T +SVL AC++  +VE+G
Sbjct: 429 LSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEG 488

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
              FD   K   +L N  HY+CM+D+LGRAG + EA +++     +    +W +LL++C+
Sbjct: 489 CELFDSFRKDKIMLTND-HYACMVDLLGRAGRLEEA-EMLTTEVINPDLVLWRTLLSACK 546

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
            +R +E+AE   +++  +EP + G  +L+SN+YA+  +W  V   +  ++D ++KK  + 
Sbjct: 547 VHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAM 606

Query: 477 SWVEIKGKR---------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
           SWVEI  +          +HP   +I   LE+L+++ K LGY  +      D+E++ K+ 
Sbjct: 607 SWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKER 666

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
            L  HSEKLA+ F +     G  IRI+KNLR+C DCHS++K  SR+  RE I RD  RFH
Sbjct: 667 SLHQHSEKLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFH 725

Query: 588 HFTNGSCSCWDFW 600
           HF +GSCSC D+W
Sbjct: 726 HFRDGSCSCGDYW 738



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 191/349 (54%), Gaps = 4/349 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C  ER+    K   A ++  G   + ++ + L++   KCG I  AR+VFD M +R I
Sbjct: 72  LRQCIDERSISGIKTIQAHMLKSGFPAE-ISGSKLVDASLKCGDIDYARQVFDGMSERHI 130

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+WN++I     + R +EAV ++  M+     P  E+T+SSV  A +      E ++ H 
Sbjct: 131 VTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLP-DEYTLSSVFKAFSDLSLEKEAQRSHG 189

Query: 160 FALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
            A+   ++  NVFVG+AL+D+Y K G   +A  V + + E++ V  ++++ G+ Q     
Sbjct: 190 LAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDT 249

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA+  F+   V  ++ N++T +SV+ +C  L  +  GK +H ++ K+GF S + + +SL+
Sbjct: 250 EAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLL 309

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            MY +C  V D+  VF  IE  N V W ++ISG  ++ R    +I F KM +  + PN  
Sbjct: 310 TMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSF 369

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           T  S L  CS++ M E+G+    ++ K +    + +  S +ID+ G+ G
Sbjct: 370 TLSSALRGCSNLAMFEEGRQIHGIVTK-YGFDRDKYAGSGLIDLYGKCG 417



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 151/310 (48%), Gaps = 11/310 (3%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           K+F S  +     N       T  + L SC   +    GK+ H  ++  G  +   +   
Sbjct: 253 KAFQSMLVEKVQPNE-----YTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTS 307

Query: 74  LINFYSKCGLISGARKVFD--EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           L+  Y +C L+  + +VF   E P +  VSW ++I     NGRE+ A+  F  M+R+   
Sbjct: 308 LLTMYLRCSLVDDSLRVFKCIEYPNQ--VSWTSLISGLVQNGREEMALIEFRKMMRDSIK 365

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P S FT+SS L  C+      E +Q+H    K   DR+ + G+ L+D+Y KCG    A  
Sbjct: 366 PNS-FTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARL 424

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+++ E + ++ ++M+  + QN    EAL LF R   LGL+ N  T+ SV+ AC     
Sbjct: 425 VFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRL 484

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           + +G ++     K          + +VD+  + G + +A  + + +   ++VLW T++S 
Sbjct: 485 VEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDLVLWRTLLSA 544

Query: 312 FSRHARSVEV 321
              H R VE+
Sbjct: 545 CKVH-RKVEM 553



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           S +L  C  +R +   K +    LK+     +  G+ L+D   KCG I  A +VF+ M E
Sbjct: 69  SQLLRQCIDERSISGIKTIQAHMLKSGFPAEI-SGSKLVDASLKCGDIDYARQVFDGMSE 127

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV 258
           R+ VTW+S++A  +++   +EA+ ++R      +  +++T+SSV  A + L+   + ++ 
Sbjct: 128 RHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRS 187

Query: 259 HAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           H +    G   SN+F  S+LVDMY K G   +A  V   +EEK+VVL   +I G+S+   
Sbjct: 188 HGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGE 247

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             E +  F+ M    + PNE TY SVL +C ++  +  GK    LMVK
Sbjct: 248 DTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVK 295



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           K + A + K+GF + + + S LVD   KCG +  A  VF G+ E+++V WN++I+   +H
Sbjct: 85  KTIQAHMLKSGFPAEI-SGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKH 143

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375
            RS E + ++  M    + P+E T  SV  A S + + ++ +    L V     + NVF 
Sbjct: 144 RRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFV 203

Query: 376 YSCMIDILGRAGLIHEA 392
            S ++D+  + G   EA
Sbjct: 204 GSALVDMYVKFGKTREA 220


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 318/522 (60%), Gaps = 21/522 (4%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ NI+++ Y++ G +  AR++FD  P R + +W  ++  Y  NG  +EA  +F  M 
Sbjct: 223 DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
                 ++     +++ A   +R + E K+L  F +     RNV     +L  YA+ G++
Sbjct: 283 ERNAVSWN-----AMVAAYIQRRMMDEAKEL--FNMMPC--RNVASWNTMLTGYAQAGML 333

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            +A  VF++MP+++ V+W++M+A + Q    EE L LF      G   N+   + V+  C
Sbjct: 334 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A +AAL  G Q+H  L + G+G   F  ++L+ MY KCG + DA   F  +EE++VV WN
Sbjct: 394 ADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN 453

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI+G++RH    E + +F+ M+     P++ T + VL+ACSH G+VEKG SYF  M   
Sbjct: 454 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHD 513

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
             V     HY+CMID+LGRAG + EA+DL+ +MPF+  ++MWG+LL + R +RN EL   
Sbjct: 514 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRS 573

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN 486
           AA+++F +EP+NAG ++LLSNIYA++ +W +  + R ++ +  VKK    SW+E++ K +
Sbjct: 574 AAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVH 633

Query: 487 --------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
                   HP   +IY+ LE L   MKK GY   T+  LHDVE+  K+ +L +HSEKLA+
Sbjct: 634 TFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAV 693

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCH----SFMKFASRIAGR 576
            +G++ + PG PIR++KNLR+CGDCH    ++++   +++GR
Sbjct: 694 AYGILNIPPGRPIRVIKNLRVCGDCHNAFKAWIELMLKVSGR 735



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 185/382 (48%), Gaps = 38/382 (9%)

Query: 40  LQSCARERA----PVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L+S AR+R+    P  G    +   G  L  + + SN  I  + + G ++ A ++F  MP
Sbjct: 7   LRSAARQRSHRPPPAAGDASSSSSSGR-LEPEVIRSNKAITAHMRAGRVADAERLFAAMP 65

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155
           +R   ++N ++  Y+ NGR   A +LF  + R        ++ +++L A A    + + +
Sbjct: 66  RRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP-----DNYSYNTLLHALAVSSSLADAR 120

Query: 156 QL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            L     ++ ++  NV + +     +A  GL+S A   F+  PE++ V+W+ M+A +V+N
Sbjct: 121 GLFDEMPVRDSVTYNVMISS-----HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ-GKQVHA-VLCKTGFGSNMF 272
              EEA  LF          N  T   VI   A ++  +Q GK   A  L     G ++ 
Sbjct: 176 GRVEEARGLF----------NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           + + +V  YA+ G +V+A  +F     ++V  W  ++SG++++    E   +F+ M +  
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER- 284

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              N  ++ ++++A     M+++ K  F++M  +     NV  ++ M+    +AG++ EA
Sbjct: 285 ---NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEA 336

Query: 393 YDLILNMPFDATASMWGSLLAS 414
             +   MP    A  W ++LA+
Sbjct: 337 KAVFDTMP-QKDAVSWAAMLAA 357



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 71/317 (22%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D++T N++I+ ++  GL+S AR  FD  P++  VSWN ++ +Y  NGR +EA  LF    
Sbjct: 130 DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF---- 185

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
              +T +                                   +V    AL+  Y + G +
Sbjct: 186 -NSRTEW-----------------------------------DVISWNALMSGYVQWGKM 209

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           S+A  +F+ MP R+ V+W+ MV+G+ +     EA  LF  A V     + FT ++V+   
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPV----RDVFTWTAVVSGY 265

Query: 247 AGLAALIQGKQVHAVLCKTGFGS---------------------------NMFAASSLVD 279
           A    L + ++V   + +    S                           N+ + ++++ 
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLT 325

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
            YA+ G + +A  VF  + +K+ V W  M++ +S+   S E + LF +M + G   N   
Sbjct: 326 GYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSA 385

Query: 340 YISVLSACSHIGMVEKG 356
           +  VLS C+ I  +E G
Sbjct: 386 FACVLSTCADIAALECG 402



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           S     L +CA   A   G   H ++I  G        N L+  Y KCG +  AR  F+E
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-----AK 148
           M +R +VSWNT+I  Y  +G  +EA+ +F +M+R   T   + T+  VL AC+      K
Sbjct: 444 MEERDVVSWNTMIAGYARHGFGKEALEIF-DMMRTTSTKPDDITLVGVLAACSHSGLVEK 502

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
              +     H F + A  +      T ++D+  + G +++A  + + MP E +   W ++
Sbjct: 503 GISYFYSMHHDFGVTAKPEHY----TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGAL 558

Query: 208 VA 209
           + 
Sbjct: 559 LG 560


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 330/574 (57%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +C  E   +  +  H   +        L +N  I  Y+KCG +  A  VF  M
Sbjct: 418 TILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGM 477

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + + SWN +IG +  NG   +A+  +  M R G  P  +F++ S+L AC     +   
Sbjct: 478 NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILP-DDFSIVSLLLACGRLGLLQYG 536

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H F L+  ++ N FV  +LL +Y  C         FE+M ++N V W++M++G+ QN
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQN 596

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           EL  EAL LFR+    GLE ++  I+S++ AC+ L+AL  GK+VH    K     + F A
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVA 656

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            SL+DMYAK G +  +  +F+ +  K V  WN MI+GF  H +  + + LFE M+++   
Sbjct: 657 CSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQ 716

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ VL AC H G+V +G +Y   M   + + P + HY+C+ID+LGRAG ++EA +
Sbjct: 717 PDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALN 776

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +  A +W SLL+S   Y +LE+ E  A++L  +E + A +++LLSN+YA   +
Sbjct: 777 FINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGK 836

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ V   R+ ++D  ++K+   SW+E++GK         ++P   EI     +L +++ +
Sbjct: 837 WDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVE 896

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY P+    LH++E+  K+++L  HSEK+A+ FG +    G  +RI KNLRIC DCH+ 
Sbjct: 897 IGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNA 956

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S+ A RE ++RD  RFHHF  G CSC D+W
Sbjct: 957 AKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 200/390 (51%), Gaps = 4/390 (1%)

Query: 3   SLLR--YKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKII 60
           SL+R   ++ F+ +++ +      S +    +++T+   L  C+ E     G V H   +
Sbjct: 281 SLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV 340

Query: 61  GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
            +GL ++ +  N LI+ YSKCG +S A  +F ++  + +VSWN++IG+Y+  G   E   
Sbjct: 341 KLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFD 400

Query: 121 LFINM-LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           L   M + E     +E T+ ++L AC  + ++   + LH ++L+ +      +  A +  
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAA 460

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YAKCG +  A  VF  M  ++  +W++++ G  QN    +AL  +     LG+  + F+I
Sbjct: 461 YAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSI 520

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            S++ AC  L  L  GK++H  + + G   N F A SL+ +Y  C         F  + +
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGD 580

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           KN V WN M+SG+S++    E + LF +M   GL P+E    S+L ACS +  +  GK  
Sbjct: 581 KNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEV 640

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
               +K ++++ + F    ++D+  ++G +
Sbjct: 641 HCFALK-NSLMEDNFVACSLMDMYAKSGFL 669



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 5/313 (1%)

Query: 40  LQSCAR-ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           LQ C + +   +  K+     +    + D + +  LI  YS CG    +R VFD +  + 
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKN 173

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  WN ++  Y  N    EA+  F+ ++   +     FT   ++ AC  K D+   K +H
Sbjct: 174 LFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVH 233

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             A+K  +  ++FVG A++ +Y KCG + +A  +F+ MPE+N ++W+S++ GF +N  + 
Sbjct: 234 GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 219 EALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           EA   FR       GL  +  T+ +++  C+G   +  G  +H +  K G    +   ++
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNA 353

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK--MQQAGLH 334
           L+DMY+KCGC+ +A  +F  IE K+VV WN+MI  +SR     E   L  K  M++  + 
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELME 413

Query: 335 PNEQTYISVLSAC 347
            NE T +++L AC
Sbjct: 414 VNEVTILNLLPAC 426



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 175/326 (53%), Gaps = 3/326 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +++C  +     GK  H   + MGL  D    N +I  Y KCG +  A ++FD+M
Sbjct: 212 TFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKM 271

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF-TVSSVLCACAAKRDVFE 153
           P++ ++SWN++I  ++ NG   EA   F ++L  G     +  T+ ++L  C+ + +V  
Sbjct: 272 PEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H  A+K  +   + V  AL+D+Y+KCG +S+A+ +F  +  ++ V+W+SM+  + +
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 214 NELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
                E   L R+  +    +E N+ TI +++ AC   + L+  + +H    +  F    
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKE 451

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++ +  YAKCG +V A  VF G+  K+V  WN +I G +++   ++ +  + +M + 
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRL 511

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGK 357
           G+ P++ + +S+L AC  +G+++ GK
Sbjct: 512 GILPDDFSIVSLLLACGRLGLLQYGK 537


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 331/570 (58%), Gaps = 11/570 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           + +  R    ++GK  HA  I  GL+++    N L++ Y+KC  +      F+ M ++ +
Sbjct: 356 IAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDL 415

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +SW TII  Y  N    EA+ LF  +  +G        + SVL AC+  +     +++H 
Sbjct: 416 ISWTTIIAGYAQNEFHLEAINLFRKVQVKG-MDVDPMMIGSVLRACSGLKSRNFIREIHG 474

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +  K  +  ++ +  A+++VY + G I  A R FES+  ++ V+W+SM+   V N L  E
Sbjct: 475 YVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVE 533

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF   +   ++ +   I S + A A L++L +GK++H  L + GF      ASSLVD
Sbjct: 534 ALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVD 593

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYA CG V ++  +F  +++++++LW +MI+    H    + + LF+KM    + P+  T
Sbjct: 594 MYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHIT 653

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++++L ACSH G++ +GK +F++M   + + P   HY+CM+D+L R+  + EAY  + NM
Sbjct: 654 FLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNM 713

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P   ++ +W +LL +C  + N EL E+AAK+L   + +N+G + L+SNI+AA+ RW +V 
Sbjct: 714 PIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVE 773

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM-KKLGYK 510
             R  ++ + +KK    SW+E+  K        ++HP+  +IY KL +  + + KK GY 
Sbjct: 774 EVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYI 833

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
            +T+   H+V +  K ++L  HSE+LAL +GL+    G  IRI KNLRIC DCH+F K A
Sbjct: 834 AQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIA 893

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S ++ R  +VRD NRFHHF  G CSC DFW
Sbjct: 894 SEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 16/369 (4%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T  + L++C        G   H   +  G        N LI  Y KCG + GAR 
Sbjct: 142 AIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 90  VFDE--MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           +FD   M +   VSWN+II ++   G   EA++LF  M +E     + +T  + L     
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRM-QEVGVASNTYTFVAALQGVED 260

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
              V     +H   LK+    +V+V  AL+ +YAKCG + DA RVFESM  R+ V+W+++
Sbjct: 261 PSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTL 320

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           ++G VQNELY +AL  FR  Q  G + +Q ++ ++I A      L++GK+VHA   + G 
Sbjct: 321 LSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGL 380

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            SNM   ++LVDMYAKC CV      F  + EK+++ W T+I+G++++   +E + LF K
Sbjct: 381 DSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRK 440

Query: 328 MQQAGLHPNEQTYISVLSACSHI----------GMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           +Q  G+  +     SVL ACS +          G V K +   D+M++  N + NV+   
Sbjct: 441 VQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK-RDLADIMLQ--NAIVNVYGEV 497

Query: 378 CMIDILGRA 386
             ID   RA
Sbjct: 498 GHIDYARRA 506



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 216/436 (49%), Gaps = 26/436 (5%)

Query: 15  SFSSSAIASASANANATELSTLQATLQS-CARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           +F S  + S    A  + L    + L   C   +A  +G+  HA ++   L+    T  +
Sbjct: 27  AFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLV 86

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L+  Y KCG +  A KVFDEM +R I SWN ++G++ ++G+  EA+ L+ +M   G    
Sbjct: 87  LM--YGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLG-VAI 143

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
              T  SVL AC A  +     ++H  A+K      VFV  AL+ +Y KCG +  A  +F
Sbjct: 144 DACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLF 203

Query: 194 ES--MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +   M + + V+W+S+++  V      EAL LFRR Q +G+  N +T  + +      + 
Sbjct: 204 DGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSF 263

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           +  G  +H  + K+   ++++ A++L+ MYAKCG + DA  VF  +  ++ V WNT++SG
Sbjct: 264 VKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSG 323

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY--------FDLM 363
             ++    + +  F  MQ +G  P++ + +++++A    G + KGK           D  
Sbjct: 324 LVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSN 383

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLE 422
           ++  N L +++   C +  +G A       DLI           W +++A   +N  +LE
Sbjct: 384 MQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLI----------SWTTIIAGYAQNEFHLE 433

Query: 423 LAEIAAK-QLFGMEPD 437
              +  K Q+ GM+ D
Sbjct: 434 AINLFRKVQVKGMDVD 449



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L + A   +  +GK  H  +I  G   +   ++ L++ Y+ CG +  +RK+F  + QR
Sbjct: 555 SALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR 614

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            ++ W ++I +   +G   +A+ALF  M  +   P    T  ++L AC+    + E K+ 
Sbjct: 615 DLILWTSMINANGMHGCGNKAIALFKKMTDQNVIP-DHITFLALLYACSHSGLMVEGKRF 673


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 274/435 (62%), Gaps = 8/435 (1%)

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           TA++  YAK G+I +A  +F+ + ER+ + W+ M+ G+ Q+ L  E L+LFR+     + 
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            N+ T+ +V+ AC    AL  G+ VH+ +   G G N+   +SL+DMY+KCG + DA  V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  I  K+VV WN+M+ G++ H  S + + LF++M   G  P + T+I VL+ACSH G+V
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLV 189

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            +G  +F  M  ++ + P V HY CM+++LGRAG + EAY+L+ NM  D    +WG+LL 
Sbjct: 190 SEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG 249

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
           +CR + N+ L E  A+ L      N+G ++LLSNIYAA   WE VAR R L+++S  +KE
Sbjct: 250 ACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKE 309

Query: 474 KSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
              S +E+         G   HP+  EIY  LE++   +K  GY P+T+  LHD+ED++K
Sbjct: 310 PGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQK 369

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           +  L  HSEKLAL FGL+   PG  I+I+KNLR+C DCH+  K  S+I GR+ ++RD NR
Sbjct: 370 ERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNR 429

Query: 586 FHHFTNGSCSCWDFW 600
           FHHF NG CSC D+W
Sbjct: 430 FHHFVNGLCSCGDYW 444



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 129/245 (52%), Gaps = 3/245 (1%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           +I  Y+K G+I  AR +FD + +R  + WN +I  Y  +G   E + LF  ML     P 
Sbjct: 12  MITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP- 70

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           +E TV +VL AC     +   + +H +     +  NV VGT+L+D+Y+KCG + DA  VF
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           E +  ++ V W+SMV G+  +   ++AL LF+   ++G +    T   V+ AC+    + 
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 254 QG-KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISG 311
           +G K  +++  + G    +     +V++  + G + +AY +   +E +++ VLW T++  
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250

Query: 312 FSRHA 316
              H 
Sbjct: 251 CRLHG 255



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 2/145 (1%)

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++ + ++++  YAK G + +A  +F G+EE++ + WN MI G+++H    E ++LF +M 
Sbjct: 5   SLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQML 64

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            A + PNE T ++VLSAC   G +E G+ +    ++ + +  NV   + +ID+  + G +
Sbjct: 65  NAKVRPNEVTVLAVLSACGQTGALETGR-WVHSYIENNGIGINVRVGTSLIDMYSKCGSL 123

Query: 390 HEAYDLILNMPFDATASMWGSLLAS 414
            +A  L+     +     W S++  
Sbjct: 124 EDA-RLVFERISNKDVVAWNSMVVG 147



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ A L +C +  A   G+  H+ I   G+  +      LI+ YSKCG +  AR VF+ +
Sbjct: 74  TVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERI 133

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
             + +V+WN+++  Y  +G  Q+A+ LF  M   G  P ++ T   VL AC+    V E 
Sbjct: 134 SNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQP-TDITFIGVLNACSHAGLVSEG 192

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            K  +    +  ++  V     ++++  + G + +A  + ++M  +++ V W +++ 
Sbjct: 193 WKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLG 249


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/586 (35%), Positives = 344/586 (58%), Gaps = 22/586 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL A L +C+  ++   G   HA II   ++ D    + L + YSKCG +  A K F  +
Sbjct: 170 TLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRI 229

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ ++SW + + +   NG   + + LF+ M+     P +EFT++S L  C     +   
Sbjct: 230 REKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKP-NEFTLTSALSQCCEILSLELG 288

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q++   +K   + N+ V  +LL +Y K G I +A R+F  M + + VTW++M+AG  Q 
Sbjct: 289 TQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQM 348

Query: 215 -ELYE----------EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
            EL +          EAL LF +  + G++ + FT+SSV+  C+ + A+ QG+Q+HA   
Sbjct: 349 MELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTI 408

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           KTGF S++  ++SL+ MY+KCG +  A   F  +  + ++ W +MI+GFS+H  S + + 
Sbjct: 409 KTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALH 468

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           +FE M  AG+ PN  T++ VLSACSH GMV +  +YF++M K++ + P + HY CM+D+ 
Sbjct: 469 IFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMF 528

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + +A + I  M ++ +  +W + +A C+++ NLEL   AA+QL  ++P +   ++
Sbjct: 529 VRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYV 588

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LL N+Y +  R+E+V+R RK++ + +V K K  SW+ IK K        + HP+ + I  
Sbjct: 589 LLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLICK 648

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL--IHHSEKLALTFGLMCLCPGVPIRI 553
            LE L+ ++K +GY+     ++ D E+  ++     I+HSEKLA+TFGL  L    PIR+
Sbjct: 649 SLEDLLAKVKNVGYEMLESVEISDEEEEEEKTSSPNIYHSEKLAITFGLENLPNSSPIRV 708

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           +K+  IC D H+F+K+ S +AGRE IV+D  R H F NG CSC +F
Sbjct: 709 VKSTLICRDSHNFIKYVSTLAGREIIVKDSKRLHKFANGECSCGNF 754



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 250/489 (51%), Gaps = 31/489 (6%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           LQ C   R+    ++ H  ++  G +++    + L+N Y+KCG +  AR+VFD M +R +
Sbjct: 74  LQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNV 133

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+W T++  +  N + + A+ +F  ML  G  P S +T+S+VL AC++ + +    Q H 
Sbjct: 134 VAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYP-SVYTLSAVLHACSSLQSLKLGDQFHA 192

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           + +K  +D +  VG+AL  +Y+KCG + DA + F  + E+N ++W+S V+    N    +
Sbjct: 193 YIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVK 252

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
            L LF     + ++ N+FT++S +  C  + +L  G QV+++  K G+ SN+   +SL+ 
Sbjct: 253 GLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLY 312

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA-----------RSVEVMILFEKM 328
           +Y K GC+V+A+ +F+ +++ ++V WN MI+G ++             R  E + LF K+
Sbjct: 313 LYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKL 372

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
             +G+ P+  T  SVLS CS +  +E+G+      +K    L +V   + +I +  + G 
Sbjct: 373 NLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKT-GFLSDVIVSTSLISMYSKCGS 431

Query: 389 IHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           I  A    L M    T   W S++   S        L       L G+ P    N +   
Sbjct: 432 IERASKAFLEMS-TRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRP----NAVTFV 486

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPR-IAEIY---SKLEKLVE 502
            + +A      V++A       E+ ++K K    IK   +H   + +++    +LE+ + 
Sbjct: 487 GVLSACSHAGMVSQALNYF---EIMQKKYK----IKPAMDHYECMVDMFVRLGRLEQALN 539

Query: 503 EMKKLGYKP 511
            +KK+ Y+P
Sbjct: 540 FIKKMNYEP 548



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 15/310 (4%)

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L  C   R   E + +H   +K     N FV + L++VYAKCG + DA RVF++M  RN
Sbjct: 73  LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRN 132

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            V W++++ GFVQN   + A+ +F+     G   + +T+S+V+ AC+ L +L  G Q HA
Sbjct: 133 VVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHA 192

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
            + K     +    S+L  +Y+KCG + DA   FS I EKNV+ W + +S  + +   V+
Sbjct: 193 YIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVK 252

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LF +M    + PNE T  S LS C  I  +E G   + L +K      N+   + ++
Sbjct: 253 GLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIK-FGYESNLRVRNSLL 311

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN------------YRNLELAEIAA 428
            +  ++G I EA+ L   M  DA+   W +++A                +R  E  ++ +
Sbjct: 312 YLYLKSGCIVEAHRLFNRMD-DASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFS 370

Query: 429 K-QLFGMEPD 437
           K  L GM+PD
Sbjct: 371 KLNLSGMKPD 380



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 13/186 (6%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L TL + L  C+R  A  +G+  HA+ I  G  +D + S  LI+ YSKCG I  A K F
Sbjct: 380 DLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAF 439

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC------ 145
            EM  R +++W ++I  ++ +G  Q+A+ +F +M   G  P +  T   VL AC      
Sbjct: 440 LEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRP-NAVTFVGVLSACSHAGMV 498

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTW 204
           +   + FE  Q   + +K AMD        ++D++ + G +  A    + M  E +E  W
Sbjct: 499 SQALNYFEIMQ-KKYKIKPAMDHY----ECMVDMFVRLGRLEQALNFIKKMNYEPSEFIW 553

Query: 205 SSMVAG 210
           S+ +AG
Sbjct: 554 SNFIAG 559


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/579 (34%), Positives = 330/579 (56%), Gaps = 22/579 (3%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L +C  E A ++G+  HA +I  G+ +D      +++ Y KCG I+ A  VF  MP R
Sbjct: 216 AALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSR 275

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +V+WN +IG Y  N R +EA   F+ M  EG       T  ++L ACA        + +
Sbjct: 276 TVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQ-VEVVTAINLLAACAQTESSLYGRSV 334

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H +  +     +V + TALL++Y+K G +  + +VF  M  +  V+W++M+A ++  E+Y
Sbjct: 335 HGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMY 394

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EA+ LF       L  + FT+S+V+ A   L  L Q +Q+H+ + + G+G N    +++
Sbjct: 395 MEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAI 454

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MYA+CG V+ +  +F  +  K+V+ WNTMI G++ H +    + +F +M+  GL PNE
Sbjct: 455 MHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNE 514

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++SVL+ACS  G+ ++G + F+ M + + ++P + HY CM D+LGRAG + E    I 
Sbjct: 515 STFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIE 574

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP-----DNAGNHLLLSNIYAAN 452
           NMP D T  +WGSLL + RN  ++++AE AA+++F +E      DN G ++L+S++YA  
Sbjct: 575 NMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADA 634

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPR---IAEIYSKLEKLV 501
            RW++V R + L+ +  +++   +S VE        + G   HP+   I E+ + L   +
Sbjct: 635 GRWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSKMIQEVSNFLSGKI 694

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
            EM+     P  + D   + DSR+      HS +LA+ FGL+      PI + KN+RIC 
Sbjct: 695 GEMR----DPMNQSDPTSL-DSRRTTEPNKHSVRLAVVFGLISTEARTPILVKKNVRICN 749

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH  +K  S+ +GR  +V D N +H F++GSC C D+W
Sbjct: 750 DCHHALKLISKYSGRRIVVGDTNIYHQFSDGSCCCGDYW 788



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 177/332 (53%), Gaps = 1/332 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDE 93
           T    L+ CAR  A   G+  H+  I +G+   D  T N L+ FY++ GL+  A +VFD 
Sbjct: 110 TFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDG 169

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           MP R +V+WN+++  Y +NG    A+  F  M    +  +    + + L AC  +  + +
Sbjct: 170 MPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQ 229

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            +++H + ++  M+ +V VGT++LD+Y KCG I+ A  VF +MP R  VTW+ M+ G+  
Sbjct: 230 GREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYAL 289

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           NE  EEA   F + +  G +    T  +++ ACA   + + G+ VH  + +  F  ++  
Sbjct: 290 NERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVL 349

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L++MY+K G V  +  VF  +  K +V WN MI+ +      +E + LF  +    L
Sbjct: 350 ETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPL 409

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +P+  T  +V+ A   +G++ + +     +++
Sbjct: 410 YPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIR 441



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 112/241 (46%), Gaps = 4/241 (1%)

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           +L+  +A  G + DA     +   R+    + ++ G     L   AL  +      G   
Sbjct: 47  SLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGARP 106

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSNMFAASSLVDMYAKCGCVVDAYFV 293
           ++FT   V+  CA L AL +G+  H+   + G   ++++  +SL+  YA+ G V DA  V
Sbjct: 107 DRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERV 166

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA-GLHPNEQTYISVLSACSHIGM 352
           F G+  ++VV WN+M+ G+  +      ++ F +M +A  +  +    I+ L+AC     
Sbjct: 167 FDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESA 226

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           + +G+     +++ H +  +V   + ++D+  + G I  A  +   MP   T   W  ++
Sbjct: 227 LMQGREVHAYVIR-HGMEHDVKVGTSILDMYCKCGDIASAEGVFATMP-SRTVVTWNCMI 284

Query: 413 A 413
            
Sbjct: 285 G 285


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/584 (36%), Positives = 337/584 (57%), Gaps = 47/584 (8%)

Query: 60  IGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119
           +G+  NN  ++        SK G I+ A K+F  +P      +NT+  ++ +  +     
Sbjct: 28  LGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLS 87

Query: 120 ALFI-NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM------------ 166
            LF  +ML+   TP + FT  S++ AC  +    E KQLH   LK               
Sbjct: 88  LLFYSHMLQHCVTP-NAFTFPSLIRACKLEE---EAKQLHAHVLKFGFGGDTYALNNLIH 143

Query: 167 -------------------DRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
                              D NV   T+L+  Y++ GL+ +A RVFE MP ++N V+W++
Sbjct: 144 VYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNA 203

Query: 207 MVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           M+A FV+   + EA  LFRR +V   +E ++F  ++++ AC G+ AL QG  +H  + KT
Sbjct: 204 MIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKT 263

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           G   +   A++++DMY KCGC+  A+ VF G++ K V  WN MI GF+ H +  + + LF
Sbjct: 264 GIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLF 323

Query: 326 EKMQQ-AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG 384
           ++M++ A + P+  T+++VL+AC+H G+VE+G  YF  MV  H + P   HY CM+D+L 
Sbjct: 324 KEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLA 383

Query: 385 RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
           RAG + EA  +I  MP    A++ G+LL +CR + NLEL E    ++  ++P+N+G +++
Sbjct: 384 RAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVI 443

Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSK 496
           L N+YA+  +WE+VA  RKL+ D  VKKE   S +E        + G R+HP    IY+K
Sbjct: 444 LGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAK 503

Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
           + +++E ++ +G+ P+T+  LHD+ +  ++  L +HSEKLA+ +GL+    G  +R+ KN
Sbjct: 504 IYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKN 563

Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           LR+C DCH   K  S++   + I+RD +RFHHF+NG CSC D+W
Sbjct: 564 LRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 36/254 (14%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + +++C  E      K  HA ++  G   DT   N LI+ Y   G +  AR+VF  M
Sbjct: 105 TFPSLIRACKLEE---EAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTM 161

Query: 95  PQRCIVSWNTIIGSYTTNG--------------------------------REQEAVALF 122
               +VSW +++  Y+  G                                R +EA ALF
Sbjct: 162 SDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALF 221

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             M  E K     F  +++L AC     + +   +H +  K  +  +  + T ++D+Y K
Sbjct: 222 RRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCK 281

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTISS 241
           CG +  A  VF  +  +   +W+ M+ GF  +   E+A+ LF+  +   +   +  T  +
Sbjct: 282 CGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVN 341

Query: 242 VICACAGLAALIQG 255
           V+ ACA    + +G
Sbjct: 342 VLTACAHSGLVEEG 355



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 132/301 (43%), Gaps = 47/301 (15%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL-----ISDASRVFESMPERNEVTWSSM 207
           E KQ H   L+  +  N     A+  ++  C L     I+ A ++F ++P  +   ++++
Sbjct: 17  EVKQQHSLLLRLGLSTN---NHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTL 73

Query: 208 VAGFVQ-NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
              F   ++    +L+ +       +  N FT  S+I AC       + KQ+HA + K G
Sbjct: 74  FKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK---LEEEAKQLHAHVLKFG 130

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA---------- 316
           FG + +A ++L+ +Y   G + DA  VF  + + NVV W +++SG+S+            
Sbjct: 131 FGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFE 190

Query: 317 ----------------------RSVEVMILFEKMQ-QAGLHPNEQTYISVLSACSHIGMV 353
                                 R  E   LF +M+ +  +  +     ++LSAC+ +G +
Sbjct: 191 LMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGAL 250

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           E+G  +    V++  ++ +    + +ID+  + G + +A+ +   +     +S W  ++ 
Sbjct: 251 EQGM-WIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSS-WNCMIG 308

Query: 414 S 414
            
Sbjct: 309 G 309



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 1/159 (0%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L +C    A  +G   H  +   G+  D+  +  +I+ Y KCG +  A  VF  +  + +
Sbjct: 241 LSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRV 300

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
            SWN +IG +  +G+ ++A+ LF  M  E        T  +VL ACA    V E      
Sbjct: 301 SSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFR 360

Query: 160 FALKA-AMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           + +    +D        ++D+ A+ G + +A +V + MP
Sbjct: 361 YMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMP 399



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 33/199 (16%)

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM--YAKCGCVVDAYFVFSGIEEKNV 302
           AC+ +A +   KQ H++L + G  +N  A S +      +K G +  A  +F+ +   + 
Sbjct: 11  ACSSMAEV---KQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDT 67

Query: 303 VLWNTMISGFSRHARSVEVMILF-EKMQQAGLHPNEQTYISVLSAC----------SHIG 351
            L+NT+   F   +++  + +LF   M Q  + PN  T+ S++ AC          +H+ 
Sbjct: 68  FLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLHAHVL 127

Query: 352 MVEKGKSYFDLMVKQHNVL-----------------PNVFHYSCMIDILGRAGLIHEAYD 394
               G   + L    H                    PNV  ++ ++    + GL+ EA+ 
Sbjct: 128 KFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFR 187

Query: 395 LILNMPFDATASMWGSLLA 413
           +   MP    +  W +++A
Sbjct: 188 VFELMPCKKNSVSWNAMIA 206


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 318/557 (57%), Gaps = 13/557 (2%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  HA +   G  +  + +  L++ YSKCG +  + K F+ M +   VSWN +I ++  
Sbjct: 155 GRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAE 214

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           + R  EA+     M  EG    S  T  +++ A      +   + +H   L+   D++V 
Sbjct: 215 HRRGLEALRTLQKMFLEGIRACS-VTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV 273

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
               +L++Y KCG + DA  +F+SM + + + W++M+A + Q+    EAL  +   Q  G
Sbjct: 274 --NVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEG 331

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           +  + +T  SVI ACA L  +  GKQVH  L    F     A +SLV+MY KCG +  A 
Sbjct: 332 VVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELA-NSLVNMYGKCGILDVAR 390

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            +F     K  V WN MI  +++H+   +   LF  M+  G  P+  T++SVLSAC++ G
Sbjct: 391 SIFDKTA-KGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAG 449

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
           + E+  SYF  M + H V P   HY CM++ LG+AG + +A  LI  MPF+     W S 
Sbjct: 450 LPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSF 509

Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
           LA+CR++ +++  + AAK    ++P+ +  ++ L+ I+A    ++E +R RKL+ D  ++
Sbjct: 510 LANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIR 569

Query: 472 KEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
           K   +S +++         G +++PR  EI+ +L++L +EMK+ GY P+  H  HDVE  
Sbjct: 570 KNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAG 629

Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
           +K+ LL  HSE+LA+ FG++    G P+RIMKNLR+CGDCH+  K  S+I  RE IVRD 
Sbjct: 630 QKEPLLFAHSERLAIAFGIISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDS 689

Query: 584 NRFHHFTNGSCSCWDFW 600
           NRFHHF NGSCSC DFW
Sbjct: 690 NRFHHFKNGSCSCKDFW 706



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 208/379 (54%), Gaps = 14/379 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           +QSCAR  A   G+  H  I  +GL +D   SN L+  Y KCG +  AR VF+  P + +
Sbjct: 41  IQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNV 100

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLH 158
            SW  +I     +GR QEA+ALF  ML++G  P+S  + ++ + AC+A  +     + LH
Sbjct: 101 FSWTILITVCAQHGRSQEALALFYEMLKQGIQPHS-VSFTAAINACSAGPEFLPAGRALH 159

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
               +      V   T+L+ +Y+KCG + ++ + FESM E N V+W++M+A F ++    
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGL 219

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EAL   ++  + G+     T  +++ A    + L   + +H  + +TGF  ++   + ++
Sbjct: 220 EALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDV--VNVIL 277

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           +MY KCGC+ DA  +F  + + +V+ WNTMI+ +S+H  + E +  +E MQ+ G+ P++ 
Sbjct: 278 NMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDY 337

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           TY+SV+ AC+ +G +E GK     +  +   +  +   + ++++ G+ G++  A  +   
Sbjct: 338 TYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTEL--ANSLVNMYGKCGILDVARSI--- 392

Query: 399 MPFDATAS---MWGSLLAS 414
             FD TA     W +++ +
Sbjct: 393 --FDKTAKGSVTWNAMIGA 409


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 318/577 (55%), Gaps = 53/577 (9%)

Query: 75  INFYSKCG------LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           ++  S+CG       I  A     ++P R +   + +I + + + R   A+ L+ ++LR 
Sbjct: 8   VDLLSRCGEARAIVRIQAALLTSGQLP-RSVELHDALIRALSRSARPHLALPLYAHLLRA 66

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQL----HVFALKAAMDRNVFVGTALLDV----- 179
           G  P +  T+ S+L + A    V     L    H  A+K  +DR V V  AL+ V     
Sbjct: 67  GLLP-TPHTLPSLLKSMALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFL 125

Query: 180 ---------------------------YAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
                                      YA+ G ++DA  +F+ MP RN V+WS+MV G+V
Sbjct: 126 GSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYV 185

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           Q     EAL +F R Q   +  +   +  V+ ACA   AL QGK VH  L   G   N+F
Sbjct: 186 QAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLF 245

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++LVDMY+KCG V  A  VF  ++ KNV+ W TMI G + H R  E ++LF +M+ +G
Sbjct: 246 FGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSG 305

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P++  +I VL AC+H G+V+KG+  FD MV+++ + P + HY CM+D+L R G ++EA
Sbjct: 306 IRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEA 365

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
            ++I  MP +  A +WG+L+A CR ++N+E AE  AK    +EPD +G ++LLSNIYAA+
Sbjct: 366 KEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAAS 425

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            R       R L+R+  V K    S VE+         G  +HPRI +I SK  ++   +
Sbjct: 426 GRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRI 485

Query: 505 K-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
           + + GY P+ +  L D+E+  K+  L  HSEKLA+ F L+ +   +PIRI KNLR+C DC
Sbjct: 486 RLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDC 545

Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           H   K  S++ GRE +VRD  RFH F  G+CSC D+W
Sbjct: 546 HHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 132/251 (52%), Gaps = 3/251 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D  T N LI  Y++ G ++ AR +FDEMP R  VSW+ ++  Y   G  +EA+ +F  M 
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            E   P  +  +  VL ACA    + + K +H +     +  N+F GTAL+D+Y+KCG +
Sbjct: 202 AEDVRP-DDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEV 260

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  VFE M  +N + W++M+ G   +    EA++LF + +  G+  +      V+CAC
Sbjct: 261 QLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCAC 320

Query: 247 AGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVL 304
                + +G+++  +++ K G    +     +VD+ A+ G + +A  +   +  E + ++
Sbjct: 321 THAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALI 380

Query: 305 WNTMISGFSRH 315
           W  +++G   H
Sbjct: 381 WGALMAGCRFH 391



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           + L   L +CA+  A  +GK  H  +   G+  +      L++ YSKCG +  A  VF+ 
Sbjct: 210 TVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFER 269

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA------A 147
           M  + +++W T+I     +GR  EAV LF  M   G  P  +     VLCAC        
Sbjct: 270 MQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRP-DDIAFIGVLCACTHAGLVDK 328

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
            R++F+   +  + +K  ++        ++D+ A+ G + +A  + + MP E + + W +
Sbjct: 329 GRELFD-SMVRKYGIKPKIEHY----GCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGA 383

Query: 207 MVAG 210
           ++AG
Sbjct: 384 LMAG 387



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 271 MFAASSLVDMYAKCG-----CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILF 325
           MF  +  VD+ ++CG       + A  + SG   ++V L + +I   SR AR    + L+
Sbjct: 1   MFGVAGYVDLLSRCGEARAIVRIQAALLTSGQLPRSVELHDALIRALSRSARPHLALPLY 60

Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
             + +AGL P   T  S+L + + +     G +   L V  H V
Sbjct: 61  AHLLRAGLLPTPHTLPSLLKSMA-LSPAVPGAAVLALTVHTHAV 103


>gi|414876780|tpg|DAA53911.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 491

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/489 (40%), Positives = 305/489 (62%), Gaps = 11/489 (2%)

Query: 123 INMLREGKT-PYSEFTV--SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           + + RE +T  +   T+  +S+L    A  D+   +Q+H   +   +    F+G AL+D+
Sbjct: 3   LQLFREMQTLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMGNALIDM 62

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           Y+KCG++  A  +F +  ++  ++W++++ G VQN  +EEAL LF   +  GL  ++ T 
Sbjct: 63  YSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRATC 122

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           SS+I + + L  +  G+Q+HA L  +G  S++F+ S+L+DMYAKCGC+ +A   F+ + E
Sbjct: 123 SSIIKSSSSLGVIGIGRQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEMPE 182

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           KN + WN +IS ++++ ++   + +F+ M   G  P+  T++SVL+ACSH G+ E+   Y
Sbjct: 183 KNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECMKY 242

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FDLM   +++ P   HYSC+ID LGRAG   +   ++  MPF+A   +W S+L SCR Y 
Sbjct: 243 FDLMRYYNSMSPWKEHYSCVIDALGRAGCFDKIQKVLDEMPFEADPVIWSSILHSCRIYG 302

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           N +LA +AA+ LF M P +A  +++LSNIYA    WE  AR +K++RD  V+KE   SWV
Sbjct: 303 NQDLATVAAENLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVRKESGNSWV 362

Query: 480 EIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           EIK K          +P I EI  +LE+L EEM K GY+P+T   LH V++ +K E L +
Sbjct: 363 EIKQKIYMFSSNDHTNPMIDEIKEELERLYEEMDKQGYEPDTSCALHMVDNKQKLESLKY 422

Query: 532 HSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTN 591
           HSE+LA+ F L+   PG PI +MKNL  C DCH+ +K  S+I  R+ IVRD  RFHHF +
Sbjct: 423 HSERLAIAFALINTPPGTPITVMKNLSACLDCHAAIKMISKIVNRDIIVRDSRRFHHFKD 482

Query: 592 GSCSCWDFW 600
           G CSC D+W
Sbjct: 483 GFCSCGDYW 491



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 121/216 (56%), Gaps = 4/216 (1%)

Query: 38  ATLQSCARERAPVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           A+L S A     ++ G+  HA++I +GL  +    N LI+ YSKCG++  A+ +F     
Sbjct: 22  ASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMGNALIDMYSKCGMLDAAKTIFANKSD 81

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           +  +SW  +I     NG+ +EA+ LF NM R G +P    T SS++ + ++   +   +Q
Sbjct: 82  KTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSP-DRATCSSIIKSSSSLGVIGIGRQ 140

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           LH +   +    +VF G+ALLD+YAKCG + +A R F  MPE+N +TW+++++ + Q   
Sbjct: 141 LHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQ 200

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACA--GLA 250
            + A+ +F      G   +  T  SV+ AC+  GLA
Sbjct: 201 AKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLA 236



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 102/199 (51%), Gaps = 2/199 (1%)

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LFR  Q L  + +    +S++     L  +  G+Q+HA L   G     F  ++L+D
Sbjct: 2   ALQLFREMQTLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMGNALID 61

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY+KCG +  A  +F+   +K  + W  +I+G  ++ +  E + LF  M++AGL P+  T
Sbjct: 62  MYSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRAT 121

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
             S++ + S +G++  G+     +    + + +VF  S ++D+  + G + EA      M
Sbjct: 122 CSSIIKSSSSLGVIGIGRQLHAYLTTSGH-MSSVFSGSALLDMYAKCGCLDEAIRTFNEM 180

Query: 400 PFDATASMWGSLLASCRNY 418
           P +  +  W +++++   Y
Sbjct: 181 P-EKNSITWNAVISAYAQY 198


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/605 (35%), Positives = 332/605 (54%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L +C +      G++   K   +G   D + +  LI+ ++KCG +  A  VF  M
Sbjct: 50  TLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSM 109

Query: 95  PQ------------------------------RCIVSWNTIIGSYTTNGREQEAVALFIN 124
                                           + +VSWN +I +YT  G +++A +LF  
Sbjct: 110 GAMRDIISVTAMIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHR 169

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           M   G TP   +T SS+L ACA+ + + + + LHV       DR+  +   L+ +Y +CG
Sbjct: 170 MCTLGHTP-DIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCG 228

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            +  A R F S+ ++    W++M+A + Q +  ++AL L++   + G   ++FT SSV+ 
Sbjct: 229 SLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVD 288

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           +CA L AL +GK +H      GF  ++   ++LV+MYAKCG + DA   F GI  K+VV 
Sbjct: 289 SCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVS 348

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364
           W+ MI+  ++H  + E + L   M   G+  NE T  SVL ACSH G + +G  YF  + 
Sbjct: 349 WSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLS 408

Query: 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
           +   +  +  +    ID+LGRAG + EA  ++  MPF  +     +LL  C+ + ++   
Sbjct: 409 QDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRG 468

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-- 482
           +   K++  +EP+N G+++LL+N+YAA  RW++VA+ R+ +R   VK++   S +E +  
Sbjct: 469 KAFTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDK 528

Query: 483 ------GKRNHPRIAEIYSKLEKLVEEMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                 G  ++PR  EI ++LE+L   MK + GY P+T    HDV D +K+ELL  HSEK
Sbjct: 529 IYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEK 588

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           +A+ FGL+   PG  +RI+KNLR+C DCH+  K AS+I GR  IVRD  RFHHF  G CS
Sbjct: 589 MAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICS 648

Query: 596 CWDFW 600
           C D+W
Sbjct: 649 CGDYW 653



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 153/301 (50%), Gaps = 31/301 (10%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
           AR+VFD + QR   SW+ ++  Y  N   QEA+ ++  M+RE +     +T+SSVL AC 
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRE-EISIDAYTLSSVLAACT 59

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-------- 198
              DV E + +   A +   +++V V T+L+ ++AKCG + +A  VF SM          
Sbjct: 60  KLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVT 119

Query: 199 ----------------------RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
                                 ++ V+W++M+A +      ++A  LF R   LG   + 
Sbjct: 120 AMIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDI 179

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           +T SS++ ACA    L  G+ +H  +   GF  +    ++L+ MY +CG +  A   F  
Sbjct: 180 YTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYS 239

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           IE+K +  WNTM++ +++  +  + + L++ M   G  P+  T+ SV+ +C+ +G + +G
Sbjct: 240 IEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG 299

Query: 357 K 357
           K
Sbjct: 300 K 300



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 155/291 (53%), Gaps = 3/291 (1%)

Query: 28  ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGA 87
            +  ++ T  + L +CA  +    G++ H +I   G + D    N LI+ Y++CG +  A
Sbjct: 174 GHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESA 233

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           R+ F  + ++ + +WNT++ +Y    + ++A+ L+ NML EG TP   FT SSV+ +CA+
Sbjct: 234 RRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTP-DRFTFSSVVDSCAS 292

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
              + E K +H  +     +++V +GTAL+++YAKCG ++DA + F+ +  ++ V+WS+M
Sbjct: 293 LGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAM 352

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-G 266
           +A   Q+   EEAL L     + G+  N+ T SSV+ AC+    L +G      L +  G
Sbjct: 353 IAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFG 412

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHA 316
              +       +D+  + G + +A  V   +  K + V   T++ G   H 
Sbjct: 413 IERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 463


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/522 (38%), Positives = 312/522 (59%), Gaps = 11/522 (2%)

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           R +FD++P      +N++I +    G    A+A++  MLR G    + FT++  L ACAA
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
                E +QLH  AL+  +  + +V T LL++YAKC  ++ A  VF+ M  ++N V WS+
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           MV+G+ +  +  EAL LFR  Q +G+E ++ T+ SVI ACA   AL  GK VHA + + G
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 258

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
              ++  +++L+DMYAKCG +  A  VF  + EK+   W+ MI GF+ H    + + LF 
Sbjct: 259 ITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFS 318

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M +  + PN  T+I VLSAC+H G+VE G+ Y+ +M +   + P++ +Y CM+D+L R+
Sbjct: 319 RMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRS 377

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           GL+ +AY  ++ MP    + +W +LL +C++   +++AE A K+L  +EP N  N++LLS
Sbjct: 378 GLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLS 437

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLE 498
           N+YA+N +W+ V+  R+ ++   V     +S +EI G          +HP I EI   L 
Sbjct: 438 NLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLR 497

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           ++ + +++ G+KP T   LHDV +  K+  L  HSE+LA+ +GL+       IR++KNLR
Sbjct: 498 EMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 557

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            C DCH   K  S+   RE +VRD  RFH F  GSCSC DFW
Sbjct: 558 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 146/277 (52%), Gaps = 3/277 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++CA   AP  G+  HA+ +  GL         L+N Y+KC  ++ AR VFD M
Sbjct: 128 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 187

Query: 95  P-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              + +V+W+ ++  Y+  G   EA+ LF  M   G  P  E T+ SV+ ACA    +  
Sbjct: 188 AGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEP-DEVTMVSVISACAKAGALDL 246

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H +  +  +  ++ + TAL+D+YAKCGLI  A  VF++M E++   WS+M+ GF  
Sbjct: 247 GKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAI 306

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           + L E+AL LF R   L +  N  T   V+ ACA    +  G++  +++   G   +M  
Sbjct: 307 HGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMEN 366

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMI 309
              +VD+  + G + DAY FV       N V+W T++
Sbjct: 367 YGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLL 403


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/522 (38%), Positives = 312/522 (59%), Gaps = 11/522 (2%)

Query: 88  RKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           R +FD++P      +N++I +    G    A+A++  MLR G    + FT++  L ACAA
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSS 206
                E +QLH  AL+  +  + +V T LL++YAKC  ++ A  VF+ M  ++N V WS+
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           MV+G+ +  +  EAL LFR  Q +G+E ++ T+ SVI ACA   AL  GK VHA + + G
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 307

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
              ++  +++L+DMYAKCG +  A  VF  + EK+   W+ MI GF+ H    + + LF 
Sbjct: 308 ITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFS 367

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           +M +  + PN  T+I VLSAC+H G+VE G+ Y+ +M +   + P++ +Y CM+D+L R+
Sbjct: 368 RMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRS 426

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           GL+ +AY  ++ MP    + +W +LL +C++   +++AE A K+L  +EP N  N++LLS
Sbjct: 427 GLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLS 486

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLE 498
           N+YA+N +W+ V+  R+ ++   V     +S +EI G          +HP I EI   L 
Sbjct: 487 NLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLR 546

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           ++ + +++ G+KP T   LHDV +  K+  L  HSE+LA+ +GL+       IR++KNLR
Sbjct: 547 EMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLR 606

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            C DCH   K  S+   RE +VRD  RFH F  GSCSC DFW
Sbjct: 607 FCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 146/277 (52%), Gaps = 3/277 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L++CA   AP  G+  HA+ +  GL         L+N Y+KC  ++ AR VFD M
Sbjct: 177 TLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGM 236

Query: 95  P-QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
              + +V+W+ ++  Y+  G   EA+ LF  M   G  P  E T+ SV+ ACA    +  
Sbjct: 237 AGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEP-DEVTMVSVISACAKAGALDL 295

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            K +H +  +  +  ++ + TAL+D+YAKCGLI  A  VF++M E++   WS+M+ GF  
Sbjct: 296 GKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAI 355

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           + L E+AL LF R   L +  N  T   V+ ACA    +  G++  +++   G   +M  
Sbjct: 356 HGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMEN 415

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMI 309
              +VD+  + G + DAY FV       N V+W T++
Sbjct: 416 YGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLL 452


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 337/604 (55%), Gaps = 44/604 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T    L+SCA+ +    G+  H  ++ +G + D      LI+ Y++ G +  ARKVFD  
Sbjct: 91  TFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDIS 150

Query: 93  -----------------------------EMPQRCIVSWNTIIGSYTTNGREQEAVALFI 123
                                        E+P + +VSWN +I  Y   G  +EA+ LF 
Sbjct: 151 SHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFK 210

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M+        E T+ +V+ ACA    +   + +H +        N+ +  AL+D+Y+K 
Sbjct: 211 EMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKF 270

Query: 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243
           G +  A  +F+ +  ++ ++W++++ G+    LY+EAL+LF+     G   N  T+ S++
Sbjct: 271 GEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 330

Query: 244 CACAGLAALIQGKQVHAVLCKT--GFGSNMFA-ASSLVDMYAKCGCVVDAYFVF-SGIEE 299
            ACA L A+  G+ +H  + K   G  +N+ +  +SL+DMYAKCG +  A  VF S +  
Sbjct: 331 PACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSN 390

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           +++  WN MISGF+ H R+     +F +M+  G+ P++ T++ +LSACSH GM++ G++ 
Sbjct: 391 RSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNI 450

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F  M + + + P + HY CMID+LG +GL  EA ++I  MP +    +W SLL +C+ + 
Sbjct: 451 FRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG 510

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK-SW 478
           NLEL E  AK+L  +EP N+G+++LLSNIYAA  RW EVA+ R L+ D  +KK+    S 
Sbjct: 511 NLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSS 570

Query: 479 VEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           +EI         G + HP+  EIY  LE++   +++ G+ P+T   L ++E+  ++  L 
Sbjct: 571 IEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALR 630

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           HHSEKLA+ FGL+   PG  + IMKNLR+C +CH   K  S+I  RE I RD  RF HF 
Sbjct: 631 HHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFR 690

Query: 591 NGSC 594
           +G C
Sbjct: 691 DGVC 694



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 219/425 (51%), Gaps = 40/425 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSY 109
           +  HA++I  GL+N     + L+ F        G   A  VFD + +  ++ WNT+   +
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
             +     A+ L++ M+  G  P S +T   +L +CA  +   E +Q+H   LK   D +
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDS-YTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ-----------NEL-- 216
           ++V T+L+ +YA+ G + DA +VF+    R+ V++++++AG+V            +E+  
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 217 ------------------YEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQ 257
                             Y+EAL LF+   ++  +  ++ T+ +V+ ACA   ++  G+ 
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR 317
           VH+ +   GF SN+   ++L+D+Y+K G V  A  +F G+  K+V+ WNT+I G++    
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303

Query: 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK-SYFDLMVKQHNVLPNVFHY 376
             E ++LF++M ++G  PN+ T +S+L AC+H+G ++ G+  +  +  K   V+ NV   
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 377 -SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA--SCRNYRNLELAEIAAKQLFG 433
            + +ID+  + G I  A  +  +   + + S W ++++  +     N      +  ++ G
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 434 MEPDN 438
           +EPD+
Sbjct: 424 IEPDD 428


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 329/574 (57%), Gaps = 9/574 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L +C  E   +  +  H   +        L +N  I  Y+KCG +  A  VF  M
Sbjct: 418 TILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGM 477

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + + SWN +IG +  NG   +A+  +  M R G  P  +F++ S+L AC     +   
Sbjct: 478 NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILP-DDFSIVSLLLACGRLGLLQYG 536

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H F L+  ++ N FV  +LL +Y  C         FE M ++N V W++M++G+ QN
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQN 596

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           EL  EAL LFR+    GLE ++  I+S++ AC+ L+AL  GK+VH    K     + F A
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVA 656

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
            SL+DMYAK G +  +  +F+ +  K V  WN MI+GF  H +  + + LFE M+++   
Sbjct: 657 CSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQ 716

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T++ VL AC H G+V +G +Y   M   + + P + HY+C+ID+LGRAG ++EA +
Sbjct: 717 PDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALN 776

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I  MP +  A +W SLL+S   Y +LE+ E  A++L  +E + A +++LLSN+YA   +
Sbjct: 777 FINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGK 836

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ V   R+ ++D  ++K+   SW+E++GK         ++P   EI     +L +++ +
Sbjct: 837 WDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVE 896

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY P+    LH++E+  K+++L  HSEK+A+ FG +    G  +RI KNLRIC DCH+ 
Sbjct: 897 IGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNA 956

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K+ S+ A RE ++RD  RFHHF  G CSC D+W
Sbjct: 957 AKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 200/390 (51%), Gaps = 4/390 (1%)

Query: 3   SLLR--YKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKII 60
           SL+R   ++ F+ +++ +      S +    +++T+   L  C+ E     G V H   +
Sbjct: 281 SLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAV 340

Query: 61  GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
            +GL ++ +  N LI+ YSKCG +S A  +F ++  + +VSWN++IG+Y+  G   E   
Sbjct: 341 KLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFD 400

Query: 121 LFINM-LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           L   M + E     +E T+ ++L AC  + ++   + LH ++L+ +      +  A +  
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAA 460

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YAKCG +  A  VF  M  ++  +W++++ G  QN    +AL  +     LG+  + F+I
Sbjct: 461 YAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSI 520

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            S++ AC  L  L  GK++H  + + G   N F A SL+ +Y  C         F  + +
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGD 580

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           KN V WN M+SG+S++    E + LF +M   GL P+E    S+L ACS +  +  GK  
Sbjct: 581 KNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEV 640

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
               +K ++++ + F    ++D+  ++G +
Sbjct: 641 HCFALK-NSLMEDNFVACSLMDMYAKSGFL 669



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 5/313 (1%)

Query: 40  LQSCAR-ERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           LQ C + +   +  K+     +    + D + +  LI  YS CG    +R VFD +  + 
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKN 173

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  WN ++  Y  N    EA+  F+ ++   +     FT   ++ AC  K D+   K +H
Sbjct: 174 LFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVH 233

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             A+K  +  ++FVG A++ +Y KCG + +A  +F+ MPE+N ++W+S++ GF +N  + 
Sbjct: 234 GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 219 EALILFRR--AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
           EA   FR       GL  +  T+ +++  C+G   +  G  +H +  K G    +   ++
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNA 353

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK--MQQAGLH 334
           L+DMY+KCGC+ +A  +F  IE K+VV WN+MI  +SR     E   L  K  M++  + 
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELME 413

Query: 335 PNEQTYISVLSAC 347
            NE T +++L AC
Sbjct: 414 VNEVTILNLLPAC 426



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 175/326 (53%), Gaps = 3/326 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +++C  +     GK  H   + MGL  D    N +I  Y KCG +  A ++FD+M
Sbjct: 212 TFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKM 271

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF-TVSSVLCACAAKRDVFE 153
           P++ ++SWN++I  ++ NG   EA   F ++L  G     +  T+ ++L  C+ + +V  
Sbjct: 272 PEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +H  A+K  +   + V  AL+D+Y+KCG +S+A+ +F  +  ++ V+W+SM+  + +
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 214 NELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
                E   L R+  +    +E N+ TI +++ AC   + L+  + +H    +  F    
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKE 451

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
              ++ +  YAKCG +V A  VF G+  K+V  WN +I G +++   ++ +  + +M + 
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRL 511

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGK 357
           G+ P++ + +S+L AC  +G+++ GK
Sbjct: 512 GILPDDFSIVSLLLACGRLGLLQYGK 537


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 327/586 (55%), Gaps = 21/586 (3%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFD 92
           S+   TLQ   + +     K  HA +I  GL   T   S IL+   S   + + A  +F+
Sbjct: 7   SSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILL--ISSTIVFTHALSIFN 64

Query: 93  EMPQRCIVSWNTIIGSYTT-NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            +P   I  +NT+I S          A +L+  +L       + FT  S+  AC ++  +
Sbjct: 65  HIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWL 124

Query: 152 FECKQLHVFALKAAMDR-NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
              + LH   LK      + FV  ALL+ YAKCG +     +F  + + +  +W+S+++ 
Sbjct: 125 RHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSA 184

Query: 211 FVQNE--------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +V N         L  E L LF   Q   ++ N+ T+ ++I ACA L AL QG   H  +
Sbjct: 185 YVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYV 244

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K     N F  ++L+DMY+KCGC+  A  +F  +  ++ + +N MI GF+ H    + +
Sbjct: 245 LKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQAL 304

Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
            LF+KM   GL P++ T +  + +CSH+G+VE+G   F+ M + + V P + HY C++D+
Sbjct: 305 DLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDL 364

Query: 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442
           LGRAG + EA + +LNMP    A +W SLL + R + NLE+ E+  K L  +EP+ +GN+
Sbjct: 365 LGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNY 424

Query: 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIY 494
           +LLSN+YA+  RW++V R RKL++D  + K    S VE+         G + HPR  EIY
Sbjct: 425 VLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIY 484

Query: 495 SKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIM 554
            KLE++   + + G+KP T   L D+E+  K++ L +HSE+LA+ F L+      PIRI+
Sbjct: 485 LKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRII 544

Query: 555 KNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           KNLR+CGDCH+  K  S+I  RE IVRD NRFHHF  G+CSC D+W
Sbjct: 545 KNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|218188763|gb|EEC71190.1| hypothetical protein OsI_03082 [Oryza sativa Indica Group]
          Length = 486

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/462 (42%), Positives = 286/462 (61%), Gaps = 9/462 (1%)

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           + R       LH  + K     +VFVG+++LD+YAKCG ++DA R+F+ MPERN V+WS+
Sbjct: 26  SSRPPLAPHALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPERNVVSWSA 85

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           ++ G+    ++  A+ +FR A    +  N FT+S ++  CA       G QVHA   KT 
Sbjct: 86  LICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTA 145

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             ++ F  SSLV +Y+KCG V  AY VF    E+N+ +WN  ++  ++H  +      F 
Sbjct: 146 LNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFM 205

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            MQ AG  PN  T++S+++ACSH G+V++GK YF LM K++ + P   HY+ M+D+LGR 
Sbjct: 206 DMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLM-KEYRIEPQAEHYAAMVDLLGRV 264

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G I EA  LI +MP +    +WG+LL +CR +++ + A IAAK+LF     ++G H+LLS
Sbjct: 265 GRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLS 324

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLE 498
           + YAA  R  + A ARK +RD+ V+KE   SW+E  G+        R HPR  EIY+ LE
Sbjct: 325 STYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLE 384

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           K+ E+M+  GY  +T   + DV+   KQ  + +HSE+LA+  GL+ +  GVPIR+MKNLR
Sbjct: 385 KVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLR 444

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +C DCH+ +K+ S+  GR  I+RD  RFH F +G CSC DFW
Sbjct: 445 VCDDCHNAVKYLSKCTGRIVILRDNRRFHRFEDGVCSCGDFW 486



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 4/265 (1%)

Query: 47  RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           R P+     H          D    + +++ Y+KCG ++ AR++FDEMP+R +VSW+ +I
Sbjct: 28  RPPLAPHALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPERNVVSWSALI 87

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC-KQLHVFALKAA 165
             Y   G    A+ +F   L E   P ++FTVS +L  CAA   +FE   Q+H  ++K A
Sbjct: 88  CGYADAGMHSAAMEIFRLALEEA-VPVNDFTVSCILRVCAAA-TLFELGAQVHARSIKTA 145

Query: 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225
           ++ + FVG++L+ +Y+KCGL+  A +VF   PERN   W++ +    Q+     A   F 
Sbjct: 146 LNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFM 205

Query: 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
             Q  G   N  T  S+I AC+    + +GK+  +++ +          +++VD+  + G
Sbjct: 206 DMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMKEYRIEPQAEHYAAMVDLLGRVG 265

Query: 286 CVVDAYFVFSGIE-EKNVVLWNTMI 309
            + +A  +   +  E    +W  ++
Sbjct: 266 RISEALGLIESMPMEPPEYVWGALL 290



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 2/175 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L+ CA       G   HA+ I   LN      + L++ YSKCGL+  A +VF E 
Sbjct: 117 TVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEA 176

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +  WN  + +   +G    A   F++M   G  P S  T  S++ AC+    V E 
Sbjct: 177 PERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNS-ITFLSLITACSHAGLVDEG 235

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMV 208
           K+      +  ++       A++D+  + G IS+A  + ESMP E  E  W +++
Sbjct: 236 KRYFSLMKEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALL 290


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/688 (32%), Positives = 361/688 (52%), Gaps = 113/688 (16%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           SA+A AT+  T+   LQ+C + RA   GK  H  +I  G  ++T   N +++ YS+   +
Sbjct: 225 SASAKATD-GTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRL 283

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNG---------REQEAVAL-------------- 121
             AR VFD      + SWN+II SY  NG         RE E+ ++              
Sbjct: 284 ELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGH 343

Query: 122 -----FINMLREGKTPYSEFTVSSVLCACAAKRDVFEC------KQLHVFALKAAMDRNV 170
                + N+L   ++  S           +A + V E       K++H + +++ ++ +V
Sbjct: 344 LLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDV 403

Query: 171 FVGTALLDV-------------------------------YAKCGLISDASRVFESMPER 199
           +V T+L+D+                               Y   GL  +A ++   M E 
Sbjct: 404 YVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEE 463

Query: 200 ---------------------------------------NEVTWSSMVAGFVQNELYEEA 220
                                                  N V+W++M++G  QNE Y +A
Sbjct: 464 GIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDA 523

Query: 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           L  F + Q   ++ N  TIS+++ ACAG + L +G+++H    K GF  +++ A++L+DM
Sbjct: 524 LQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDM 583

Query: 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340
           Y+K G +  A+ VF  I+EK +  WN M+ G++ +    EV  LF+ M + G+ P+  T+
Sbjct: 584 YSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITF 643

Query: 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400
            ++LS C + G+V  G  YFD M   +++ P + HYSCM+D+LG+AG + EA D I  MP
Sbjct: 644 TALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMP 703

Query: 401 FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460
             A AS+WG++LA+CR ++++++AEIAA+ LF +EP N+ N++L+ NIY+   RW +V R
Sbjct: 704 QKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVER 763

Query: 461 ARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
            ++ +    VK     SW++++          ++HP   EIY  L +L+ E+KKLGY P+
Sbjct: 764 LKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPD 823

Query: 513 TEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASR 572
           T     +++DS K+++L+ H+EKLA+T+GLM +  G PIR++KN RIC DCH+  K+ S 
Sbjct: 824 TNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISL 883

Query: 573 IAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              RE  +RD  RFHHF NG CSC D W
Sbjct: 884 ARNREIFLRDGGRFHHFMNGECSCNDRW 911



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 165/364 (45%), Gaps = 37/364 (10%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G   HA ++  G   D   S  LIN Y KC  I  A +VFDE P +    WNTI+ +   
Sbjct: 150 GMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLR 209

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           + R ++A+ L   M +      ++ T+  +L AC   R + E KQ+H + ++     N  
Sbjct: 210 SERWEDALELSRRM-QSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTS 268

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNE------------------------------ 201
           +  +++ +Y++   +  A  VF+S  + N                               
Sbjct: 269 ICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSS 328

Query: 202 -----VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256
                +TW+S+++G +    YE  L   R  Q  G + +  +I+S + A   L     GK
Sbjct: 329 IKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGK 388

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHA 316
           ++H  + ++    +++  +SLVDMY K  C+  A  VF   + KN+  WN++ISG++   
Sbjct: 389 EIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKG 448

Query: 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376
                  L  +M++ G+  +  T+ S++S  S  G  E+  +  +  +K   + PNV  +
Sbjct: 449 LFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVIN-RIKSLGLTPNVVSW 507

Query: 377 SCMI 380
           + MI
Sbjct: 508 TAMI 511



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 147/292 (50%), Gaps = 1/292 (0%)

Query: 56  HAKIIGMGLNNDTLTSN-ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGR 114
           HA++I M    + +T +  ++  Y + G    A KVF     R  + WN+ +  + + G 
Sbjct: 51  HAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGG 110

Query: 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGT 174
           +   +      L +    +    ++ VL  C A  +++   ++H   LK     +V +  
Sbjct: 111 DSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSC 170

Query: 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234
           AL+++Y KC  I  A++VF+  P + +  W+++V   +++E +E+AL L RR Q    + 
Sbjct: 171 ALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKA 230

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
              TI  ++ AC  L AL +GKQ+H  + + G  SN    +S+V MY++   +  A  VF
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVF 290

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
              E+ N+  WN++IS ++ +        LF +M+ + + P+  T+ S+LS 
Sbjct: 291 DSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSG 342



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 149 RDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
           R +   ++LH   +K     N V +  +++  Y + G    A++VF     RN + W+S 
Sbjct: 42  RTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSF 101

Query: 208 VAGFVQ-NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           +  F        E L +F+     G++++   ++ V+  C  L  L  G +VHA L K G
Sbjct: 102 LEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRG 161

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           F  ++  + +L+++Y KC  +  A  VF     +   LWNT++    R  R  + + L  
Sbjct: 162 FQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSR 221

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           +MQ A     + T + +L AC  +  + +GK     +++
Sbjct: 222 RMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIR 260



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 6/194 (3%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFY 78
           S +   +   N+T +STL   L++CA      +G+  H   +  G  +D   +  LI+ Y
Sbjct: 528 SQMQEENVKPNSTTISTL---LRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMY 584

Query: 79  SKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
           SK G +  A +VF  + ++ +  WN ++  Y   G  +E   LF NM + G  P    T 
Sbjct: 585 SKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRP-DAITF 643

Query: 139 SSVLCACAAKRDVFE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           +++L  C     V +  K         +++  +   + ++D+  K G + +A     +MP
Sbjct: 644 TALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMP 703

Query: 198 ERNEVT-WSSMVAG 210
           ++ + + W +++A 
Sbjct: 704 QKADASIWGAVLAA 717


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 330/560 (58%), Gaps = 24/560 (4%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY----TT 111
           H  +I  GL++D    + +I+ Y+K G +  A  +F  + +  +V +NT+I  +    T 
Sbjct: 235 HGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETV 294

Query: 112 NGRE--QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
            G+E   EA+ L+  +   G  P +EFT SSVL AC     +   KQ+H   +K     +
Sbjct: 295 IGKEVASEALTLYSEVQSRGMQP-TEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQED 353

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            F+G+AL+D+Y   G + D  R F S P+ + VTW++MV+G VQNEL+E+AL LF  +  
Sbjct: 354 DFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLG 413

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            GL+ + FTISSV+ ACA LA    G+Q+     K+GF       +S V MYA+ G V  
Sbjct: 414 AGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDA 473

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A   F  +E  +VV W+ +IS  ++H  + + +  F++M  A + PNE T++ VL+ACSH
Sbjct: 474 ATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSH 533

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+V++G  Y++ M K + + P + H +C++D+LGRAG + +A   I N  F A   +W 
Sbjct: 534 GGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWR 593

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLLASCR +R+LE  ++ A ++  +EP ++ ++++L N+Y         ++ R L++   
Sbjct: 594 SLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRG 653

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           VKKE   SW+E+K        G ++HP  + IY+KLE+++  ++KL           D E
Sbjct: 654 VKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIEKLATT--------DTE 705

Query: 522 DS-RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
            S R+Q L+  HSEKLA+  G++ L    PIR+MKNLR+C DCHS MK  S+   RE I+
Sbjct: 706 ISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIIL 765

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD  RFHHF +GSCSC D+W
Sbjct: 766 RDPIRFHHFRDGSCSCADYW 785



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 196/370 (52%), Gaps = 17/370 (4%)

Query: 43  CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSW 102
           C+R      G+  HA  I  GL++    SN L++ YSKCG +  AR+VFD   +R  VSW
Sbjct: 119 CSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSW 178

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD--VFECKQLHVF 160
           N+++  Y   G  +E V +F  M+R G    + F + SV+  C+ + D  +   + +H  
Sbjct: 179 NSLVSGYVRAGAREEMVRVFA-MMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGC 237

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF------VQN 214
            +KA +D +VF+ +A++D+YAK G + +A+ +F S+ E N V +++M+AGF      +  
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E+  EAL L+   Q  G++  +FT SSV+ AC     L  GKQ+H  + K  F  + F  
Sbjct: 298 EVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG 357

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S+L+D+Y   GC+ D +  F    + ++V W  M+SG  ++    + + LF +   AGL 
Sbjct: 358 SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLK 417

Query: 335 PNEQTYISVLSACSHIGMVEKG--------KSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
           P+  T  SV++AC+ + +   G        KS FD      N   +++  S  +D   R 
Sbjct: 418 PDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRR 477

Query: 387 GLIHEAYDLI 396
               E++D++
Sbjct: 478 FQEMESHDVV 487



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 190/352 (53%), Gaps = 11/352 (3%)

Query: 72  NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
           N L+  Y + G    AR++ DEMP+R  VS+N +I +Y+  G    ++       R G  
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAG-V 105

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
               F+ ++ L AC+    +   + +H  A+   +   VFV  +L+ +Y+KCG + +A R
Sbjct: 106 DVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARR 165

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL-- 249
           VF+   ER++V+W+S+V+G+V+    EE + +F   +  G+  N F + SVI  C+G   
Sbjct: 166 VFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGD 225

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             +   + VH  + K G  S++F  S+++DMYAK G +V+A  +F  ++E NVV++NTMI
Sbjct: 226 GTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMI 285

Query: 310 SGFSRHARSV------EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
           +GF R    +      E + L+ ++Q  G+ P E T+ SVL AC+  G +E GK     +
Sbjct: 286 AGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQV 345

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415
           +K +    + F  S +ID+   +G + + +    + P     + W ++++ C
Sbjct: 346 IK-YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVT-WTAMVSGC 395



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 20/282 (7%)

Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228
           ++F+   LL  Y + G    A R+ + MP RN V+++ ++  + +  L   +L    RA+
Sbjct: 42  SLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARAR 101

Query: 229 VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
             G++ ++F+ ++ + AC+    L  G+ VHA+    G  S +F ++SLV MY+KCG + 
Sbjct: 102 RAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMG 161

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A  VF   EE++ V WN+++SG+ R     E++ +F  M++ G+  N     SV+  CS
Sbjct: 162 EARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCS 221

Query: 349 HIGMVEKGKSYFDLMVKQHNVL------PNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
                 +G    D+    H  +       +VF  S MID+  + G + EA  L  ++  +
Sbjct: 222 G-----RGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ-E 275

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLF--------GMEP 436
               M+ +++A       +   E+A++ L         GM+P
Sbjct: 276 PNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQP 317



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T+ + + +CA       G+         G +  T+  N  ++ Y++ G +  A + F
Sbjct: 419 DLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRF 478

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
            EM    +VSW+ +I  +  +G  ++A+  F  M+ + K   +E T   VL AC+    V
Sbjct: 479 QEMESHDVVSWSAVISCHAQHGCARDALHFFDEMV-DAKVVPNEITFLGVLTACSHGGLV 537

Query: 152 FE-CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA-----SRVFESMPERNEVTWS 205
            E  +          +   +   T ++D+  + G ++DA     + +F + P    V W 
Sbjct: 538 DEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADP----VIWR 593

Query: 206 SMVA 209
           S++A
Sbjct: 594 SLLA 597


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/576 (35%), Positives = 326/576 (56%), Gaps = 14/576 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI--NFYSKCGLISGARKVFD 92
           +L A ++ C R       K   A ++   L  DT  ++ LI  +  +  G ++ A ++F 
Sbjct: 9   SLVAAIKRCTRVGDL---KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFS 65

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
                 +  WNTII  Y+ +     A+AL+ +M   G +P S +T   VL AC     + 
Sbjct: 66  CTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNS-YTFGFVLKACCKLLRLC 124

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E ++LH   +K  +D    +   L+ +YA CG +  A  +F+ MPE +  +WS+MV+G+ 
Sbjct: 125 EGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYA 184

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
           QN    EAL LFR  Q   +  + FT++SV+  C  L AL  GK VH+ + K G   ++ 
Sbjct: 185 QNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVV 244

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++LV MY+KCG + +A  VF G+ E++V  W+TMI+G++ H    + + LF+ M+++ 
Sbjct: 245 LGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSK 304

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
             PN  T+ SVLSACSH G+VEKG   F+ M  ++ + P + HY CM+D+  RAG++  A
Sbjct: 305 TIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHA 364

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
           +  I  MP +    +W +LL +C+ +   +L E  ++++  ++P +  N++L+SN+YA+ 
Sbjct: 365 HKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASL 424

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEM 504
            RW  V + R L++D   KK+   S +EI         G  +HP   +IY  L ++  ++
Sbjct: 425 GRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKL 484

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           K++G+   T   LHD+++  K+  L  HSE+LA+ +GL+    G PIRI+KNLR+C DCH
Sbjct: 485 KQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCH 544

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             +K  S +  RE IVRD  RFHHF    CSC D+W
Sbjct: 545 EVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 324/574 (56%), Gaps = 43/574 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+       G + H  ++ +GL+ +    N LI  Y KCG +  AR+VFDEM
Sbjct: 121 TYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEM 180

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWN+++  Y  N R  +A+ +   M   G+ P    T++S++ A A        
Sbjct: 181 IWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKP-DGCTMASLMPAVANTSS---- 235

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                         NV                    ++F ++  +N ++W+ M+  +++N
Sbjct: 236 -------------ENVLY----------------VEKIFVNLERKNLISWNVMIRVYMKN 266

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  +A+ L+ + +   +E +  T +SV+ AC  L+AL+ G+++H  + K     N+   
Sbjct: 267 SLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLE 326

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           +SL+DMYA+CGC+ DA  VF  ++ ++V  W ++IS +    +    + LF +M  +G  
Sbjct: 327 NSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQA 386

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+   ++++LSACSH G++++G+ YF  M   + + P + HY+C++D+LGRAG + EAY+
Sbjct: 387 PDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYN 446

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           +I  MP +    +W +LL+SCR + N+++  +AA  L  + P+ +G ++LLSNIYA   R
Sbjct: 447 IIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGR 506

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W+EV   R +++  +++K    S VE+         G  +HP+  EIY +L  LV +MK+
Sbjct: 507 WKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKE 566

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           LGY PET+  LHDVE+  K+  L  HSEKLA+ F L+       IRI KNLR+CGDCH  
Sbjct: 567 LGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLN-TQEYQIRITKNLRVCGDCHIA 625

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            K  S+I  RE IVRD NRFHHF +G CSC D+W
Sbjct: 626 AKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 170/341 (49%), Gaps = 36/341 (10%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L+  Y+ CG     RKVFDEM  R +V +N +I SY  N R  + + +F  M+  G  P 
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRP- 117

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
             +T   VL AC+   ++     +H   LK  +D N+FVG  L+ +Y KCG + +A RVF
Sbjct: 118 DNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVF 177

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + M  ++ V+W+SMVAG+  N  +++AL + R  +  G + +  T++S++ A A  ++  
Sbjct: 178 DEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSS-- 235

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
                           N+                     +F  +E KN++ WN MI  + 
Sbjct: 236 ---------------ENVLYVEK----------------IFVNLERKNLISWNVMIRVYM 264

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           +++   + + L+ +M++  + P+  T+ SVL AC  +  +  G+   +  V++  + PN+
Sbjct: 265 KNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEY-VEKKKLCPNL 323

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
              + +ID+  R G + +A  +   M F   AS W SL+++
Sbjct: 324 LLENSLIDMYARCGCLDDAKRVFDRMKFRDVAS-WTSLISA 363



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   K+LH         +N  +G  L+  YA CG      +VF+ M +RN V ++ M+ 
Sbjct: 33  DIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIR 92

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +V N  Y++ L++FR     G   + +T   V+ AC+    L  G  +H  + K G   
Sbjct: 93  SYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDF 152

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           N+F  + L+ MY KCGC+ +A  VF  +  K+VV WN+M++G++ + R  + + +  +M+
Sbjct: 153 NLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREME 212

Query: 330 QAGLHPNEQTYISVLSACSHI---GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
             G  P+  T  S++ A ++     ++   K + +L  K      N+  ++ MI +  + 
Sbjct: 213 DYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERK------NLISWNVMIRVYMKN 266

Query: 387 GLIHEAYDLILNMP---FDATASMWGSLLASCRNYRNLELA 424
            L  +A DL L M     +  A  + S+L +C +   L L 
Sbjct: 267 SLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLG 307


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 317/564 (56%), Gaps = 20/564 (3%)

Query: 44  ARERAPVR---GKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           A   AP R   G   H+  I  G L  D   S   ++ Y K G +  AR +F EMP R +
Sbjct: 126 AAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNV 185

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+WN ++ +   +GR  E +  +  +   G  P +  +  +   ACA    +   +Q H 
Sbjct: 186 VAWNAVMTNAVLDGRPLETIEAYFGLREAGGLP-NVVSACAFFNACAGAMYLSLGEQFHG 244

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F +K   + +V V  +++D Y KC     A  VF+ M  RN V+W SMVA + QN   EE
Sbjct: 245 FVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEE 304

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A   +  A+  G E   F +SS +  CAGL  L  G+ +HAV  ++   +N+F AS+LVD
Sbjct: 305 AFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVD 364

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ 338
           MY KCGCV DA  +F    ++N+V WN MI G++    +   +++F+ M ++G   PN  
Sbjct: 365 MYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYI 424

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
           T ++V+++CS  G+ + G   F+ M ++  + P   HY+C++D+LGRAG+  +AY++I  
Sbjct: 425 TLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQG 484

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP   + S+WG+LL +C+ +   EL  IAA++LF ++P ++GNH+LLSN++A+  RW E 
Sbjct: 485 MPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEA 544

Query: 459 ARARKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYK 510
              RK +++  +KK+   SWV  K            H    EI + L KL ++M+  GY 
Sbjct: 545 TDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYM 604

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
           P+T++ L+D+E+  K+  +  HSEKLAL FGL+C+ PGVPIRIMKNLRIC DCH   KF 
Sbjct: 605 PDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFI 664

Query: 571 SRIAGRETIVRDLNRFHHFTNGSC 594
           S        +R     H  T  +C
Sbjct: 665 S------VEIRSYQITHPLTAHTC 682



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 9/305 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A   +CA       G+  H  ++  G   D    N +++FY KC     AR VFD M  R
Sbjct: 225 AFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVR 284

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
             VSW +++ +Y  NG E+EA A ++   R G+ P ++F VSS L  CA    +   + L
Sbjct: 285 NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEP-TDFMVSSALTTCAGLLGLHLGRAL 343

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H  A+++ +D N+FV +AL+D+Y KCG + DA ++F   P+RN VTW++M+ G+      
Sbjct: 344 HAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDA 403

Query: 218 EEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLC-KTGFGSNMFAAS 275
           + AL++F      G    N  T+ +VI +C+       G ++   +  + G        +
Sbjct: 404 QNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYA 463

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKM-----Q 329
            +VD+  + G    AY V  G+  + ++ +W  ++     H ++    I  EK+     Q
Sbjct: 464 CVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQ 523

Query: 330 QAGLH 334
            +G H
Sbjct: 524 DSGNH 528



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 172/371 (46%), Gaps = 11/371 (2%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI---LINFYSKCGLISGARKVFD 92
           L A  +S    R+P  G+  HA+   + L    L+  I   L+N YSK  L + A     
Sbjct: 18  LAAAFESAIASRSPRLGRAAHAR--ALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALA 75

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL--CACAAKRD 150
             P   +VS+   I     +GR   A++ F  MLR G  P ++FT  S     A A  R 
Sbjct: 76  SDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRP-NDFTFPSAFKAAASAPPRS 134

Query: 151 VFECKQLHVFALK-AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
                Q+H  A++   +  + FV  A LD+Y K G +  A  +F  MP RN V W++++ 
Sbjct: 135 TIG-PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT 193

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
             V +    E +  +   +  G   N  +  +   ACAG   L  G+Q H  + K GF  
Sbjct: 194 NAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEM 253

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           ++   +S+VD Y KC C   A  VF G+  +N V W +M++ ++++    E    +   +
Sbjct: 254 DVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR 313

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
           ++G  P +    S L+ C+ +  +  G++   + V+   +  N+F  S ++D+ G+ G +
Sbjct: 314 RSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRS-CIDANIFVASALVDMYGKCGCV 372

Query: 390 HEAYDLILNMP 400
            +A  +    P
Sbjct: 373 EDAEQIFYETP 383



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 10/180 (5%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           + + L +CA       G+  HA  +   ++ +   ++ L++ Y KCG +  A ++F E P
Sbjct: 324 VSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA---AKRDVF 152
           QR +V+WN +IG Y   G  Q A+ +F +M+R G+T  +  T+ +V+ +C+     +D +
Sbjct: 384 QRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY 443

Query: 153 ECKQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVA 209
           E  +     F ++   +    V    +D+  + G+   A  V + MP R  ++ W +++ 
Sbjct: 444 ELFETMRERFGIEPRTEHYACV----VDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLG 499


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/553 (37%), Positives = 328/553 (59%), Gaps = 14/553 (2%)

Query: 57  AKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
           A I+G+ ++N     + L++ Y K G    A+ V D + ++ +V    +I  Y+  G + 
Sbjct: 173 AVILGLEVSN-VFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDT 231

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176
           EAV  F +ML E   P +E+T +SVL +C   +D+   K +H   +K+  +  +   T+L
Sbjct: 232 EAVKAFQSMLVEKVQP-NEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSL 290

Query: 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236
           L +Y +C L+ D+  VF+ +   N+VTW+S+++G VQN   E ALI FR+     ++ N 
Sbjct: 291 LTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNS 350

Query: 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           FT+SS +  C+ LA   +G+QVH ++ K GF  + +A S L+++Y KCGC   A  VF  
Sbjct: 351 FTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDT 410

Query: 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           + E +V+  NTMI  ++++    E + LFE+M   GL PN+ T +SVL AC++ G+VE+G
Sbjct: 411 LSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEG 470

Query: 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416
              FD   K   +L N  HY+CM+D+LGRAG + EA  LI  +  +    +W +LL++C+
Sbjct: 471 CELFDSFRKDKIMLTND-HYACMVDMLGRAGRLEEAEMLITEVT-NPDLVLWRTLLSACK 528

Query: 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSK 476
            +R +E+AE   +++  + P + G  +LLSN+YA+  +W+ V   +  +++ ++KK  + 
Sbjct: 529 VHRKVEMAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAM 588

Query: 477 SWVEIKGKR---------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE 527
           SWVEI  +          +HP   +I   LE+L+++ K LGY  +      D+E++ K+ 
Sbjct: 589 SWVEIDKETHTFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDMEETAKER 648

Query: 528 LLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFH 587
            L  HSEKLA+ F +     G  IRI+KNLR+C DCHS++K  SRI  RE I RD  RFH
Sbjct: 649 SLHQHSEKLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKRFH 707

Query: 588 HFTNGSCSCWDFW 600
           HF +GSCSC D+W
Sbjct: 708 HFRDGSCSCGDYW 720



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 196/358 (54%), Gaps = 4/358 (1%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
           T   T    L+ C  ER+    K   A+++  G   + L+ + L++   KCG I  AR++
Sbjct: 45  TTTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVE-LSGSKLVDASLKCGEIGYARQL 103

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FD MP+R IV+WN+II  Y  + R +EAV ++  M+     P  E+T+SSV  A +    
Sbjct: 104 FDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLP-DEYTLSSVFKAFSDLSL 162

Query: 151 VFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
             E ++ H  A+   ++  NVFVG+AL+D+Y K G   +A  V + + E++ V  ++++ 
Sbjct: 163 EKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIV 222

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
           G+ Q     EA+  F+   V  ++ N++T +SV+ +C  L  +  GK +H ++ K+GF S
Sbjct: 223 GYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFES 282

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            + + +SL+ MY +C  V D+  VF  I+  N V W ++ISG  ++ R    +I F KM 
Sbjct: 283 ALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMM 342

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           +  + PN  T  S L  CS++ M E+G+    + V ++    + +  S +I++ G+ G
Sbjct: 343 RDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGI-VSKYGFDRDKYAGSGLIELYGKCG 399



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L+ C+       G+  H  +   G + D    + LI  Y KCG    AR VFD +
Sbjct: 352 TLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTL 411

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
            +  ++S NT+I SY  NG  +EA+ LF  M+  G  P ++ TV SVL AC     V E 
Sbjct: 412 SEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQP-NDVTVLSVLLACNNSGLVEEG 470

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           C+    F     M  N      ++D+  + G + +A  +   +   + V W ++++ 
Sbjct: 471 CELFDSFRKDKIMLTNDHYA-CMVDMLGRAGRLEEAEMLITEVTNPDLVLWRTLLSA 526



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 1/155 (0%)

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T S ++  C    ++   K + A + K+GF   + + S LVD   KCG +  A  +F G+
Sbjct: 49  TFSQLLRQCIDERSISGIKNIQAQMLKSGFPVEL-SGSKLVDASLKCGEIGYARQLFDGM 107

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
            E+++V WN++I+ + +H RS E + ++  M    + P+E T  SV  A S + + ++ +
Sbjct: 108 PERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQ 167

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
               L V     + NVF  S ++D+  + G   EA
Sbjct: 168 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREA 202


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/605 (35%), Positives = 330/605 (54%), Gaps = 40/605 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   + +CA+ +    G+     I  + L  + L  N L++ Y KCG I  ARK+FDE 
Sbjct: 242 TMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDEC 301

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +V +NTI+ +Y   G  +E +A+   ML+ G  P    T+ S + AC+   DV   
Sbjct: 302 VDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRP-DRITMLSAVSACSELDDVSCG 360

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K  H + L+  ++    V  A++++Y KCG    A RVF+ M  +  V+W+S++AGFV+N
Sbjct: 361 KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRN 420

Query: 215 -------------------------------ELYEEALILFRRAQVLGLEYNQFTISSVI 243
                                           +++EA+ LFR  Q  G+  ++ T+  V 
Sbjct: 421 GDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVA 480

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            AC  L AL   K +H  + K     +M   ++LVDM+A+CG    A  VF+ + +++V 
Sbjct: 481 SACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVS 540

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W   I   +        + LF++M Q G+ P+   ++++L+A SH G+VE+G   F  M
Sbjct: 541 AWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSM 600

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
              + + P   HY CM+D+LGRAGL+ EA  LI +M  +    +WGSLLA+CR ++N+++
Sbjct: 601 KDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDI 660

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
           A  AA+++  ++P+  G H+LLSNIYA+  RW++VA+ R  +++    K    S +EI G
Sbjct: 661 AAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEING 720

Query: 484 K--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
           K         +HP +  I   L+++   ++ +GY P+  + L DV +  K+ LL  HSEK
Sbjct: 721 KIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEK 780

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           LA+ F L+    G+PIR+ KNLRIC DCHSF K  S+   RE IVRD NRFH F  G CS
Sbjct: 781 LAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCS 840

Query: 596 CWDFW 600
           C D+W
Sbjct: 841 CGDYW 845



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 40/439 (9%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C +  A   G   H  I+ MG   D    N LI+FY +CG I   R+VFD+M
Sbjct: 141 TFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKM 200

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSW ++IG Y   G  +EAV+LF  M+  G  P S  T+  V+ ACA  +D+   
Sbjct: 201 SERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNS-VTMVGVISACAKLQDLQLG 259

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           +Q+     +  ++ N  +  AL+D+Y KCG I  A ++F+   ++N V ++++++ +V+ 
Sbjct: 260 EQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQ 319

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L  E L +       G   ++ T+ S + AC+ L  +  GK  H  + + G        
Sbjct: 320 GLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVC 379

Query: 275 SSLVDMYAKCG-----CVV--------------------------DAYFVFSGIEEKNVV 303
           +++++MY KCG     C V                           A+ +FS + + ++V
Sbjct: 380 NAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLV 439

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            WNTMI    + +   E + LF  MQ  G+  ++ T + V SAC ++G ++  K +    
Sbjct: 440 SWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAK-WIHGY 498

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW----GSLLASCRNYR 419
           +K+ ++  ++   + ++D+  R G    A   + N       S W    G++        
Sbjct: 499 IKKKDIHFDMHLGTALVDMFARCGDPQSAMQ-VFNKMVKRDVSAWTAAIGAMAMEGNGTG 557

Query: 420 NLELAEIAAKQLFGMEPDN 438
            +EL +   +Q  G++PD 
Sbjct: 558 AIELFDEMLQQ--GIKPDG 574



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 196/407 (48%), Gaps = 41/407 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI---VSWNTIIGS- 108
           K  H++I   GLN+  L+   L N  S C  +     +  E  Q+ +   +  N I+G+ 
Sbjct: 50  KQLHSQITKNGLNHHPLS---LTNLISSCTEMGTFESL--EYAQKALELFIEDNGIMGTH 104

Query: 109 ---------YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
                    ++  G   +A+ +F  ++  G  P   FT   VL AC     + E  Q+H 
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVP-DNFTFPFVLSACTKSAALTEGFQVHG 163

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
             +K   +R++FV  +L+  Y +CG I    RVF+ M ERN V+W+S++ G+ +   Y+E
Sbjct: 164 AIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKE 223

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A+ LF     +G+  N  T+  VI ACA L  L  G+QV   + +     N    ++LVD
Sbjct: 224 AVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVD 283

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MY KCG +  A  +F    +KN+VL+NT++S + R   + EV+ +  +M + G  P+  T
Sbjct: 284 MYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRIT 343

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQH--------NVLPNVFHYSCMIDILGRAGLIHE 391
            +S +SACS +  V  GK     +++          N + N++   C     G+  +   
Sbjct: 344 MLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMY-MKC-----GKQEMACR 397

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
            +D +LN     T   W SL+A      ++E    +A ++F   PD+
Sbjct: 398 VFDRMLN----KTRVSWNSLIAGFVRNGDME----SAWKIFSAMPDS 436


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 324/574 (56%), Gaps = 40/574 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + + + A  R+   G+ CH   I  GL       + +++ Y +C  +  A K   + 
Sbjct: 115 VLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKYSKKH 174

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++C    + +I                                  VL  CA+ ++V   
Sbjct: 175 GEKCRAMGSCVI--------------------------------CRVLGHCASTKEVVLG 202

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H  ALK  ++ NV+VG+AL+D+Y KC    +A+RVFE +PE+N V+W++++  + QN
Sbjct: 203 SQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQN 262

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           EL+E+AL LF   ++ G+  N+FT +  + +CAGLA L  G  + A   KTG    +   
Sbjct: 263 ELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVC 322

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY+K G V DA  VF  +  ++VV WN++I G++ H R+ E M  F  M  A   
Sbjct: 323 NALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEV 382

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+  T+I VLSAC+ +G+V++G  Y ++M+K+  V P   HY+CM+ +L R G + EA  
Sbjct: 383 PSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAER 442

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +         W SLL+SC+ YRN  L    A+Q+F ++P + G ++LLSN+YA   R
Sbjct: 443 FIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANR 502

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
           W+ V + R+L+R+  V+KE   SW+++  +        + HP + +I  KL++L++++K 
Sbjct: 503 WDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKV 562

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
           +GY P     LHDVED +K+E L++HSEKLAL FGL+    G  IRIMKN+RIC DCH  
Sbjct: 563 IGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVA 622

Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +K  S   GR  +VRD  RFH   +G CSC D+W
Sbjct: 623 IKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 185/387 (47%), Gaps = 43/387 (11%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           GK  HA+++      D +  N LI  Y KCG +  AR+VFD MP R  VS N ++  Y +
Sbjct: 35  GKAVHARVV-RAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYAS 93

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
           +GR ++A+AL    LR      +E+ +SS + A A  R     +Q H +A+KA +  + +
Sbjct: 94  SGRHRDALAL----LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPY 149

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           V +A+L +Y +C  + +A +  +   E+     S ++                   +VLG
Sbjct: 150 VCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVI------------------CRVLG 191

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
                         CA    ++ G QVH    K     N++  S+LVDMY KC    +A 
Sbjct: 192 -------------HCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEAN 238

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + EKN+V W  +++ ++++    + + LF  M+  G+ PNE TY   L++C+ + 
Sbjct: 239 RVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLA 298

Query: 352 MVEKGKSYFDLMVKQHN--VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            ++ G +     +K  +  +LP     + ++++  ++G + +A  + L+MP     S W 
Sbjct: 299 TLKNGNALGACTMKTGHWGLLPVC---NALMNMYSKSGSVEDARRVFLSMPCRDVVS-WN 354

Query: 410 SLLASCRNY-RNLELAEIAAKQLFGME 435
           S++    ++ R  E  E     LF  E
Sbjct: 355 SIIIGYAHHGRAREAMEAFHDMLFAEE 381


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/539 (36%), Positives = 326/539 (60%), Gaps = 13/539 (2%)

Query: 74  LINFYSKCGL---ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
           LINF ++      +S AR +F+ M +  IV +N++   Y+      E  +LF+ +L +G 
Sbjct: 66  LINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGI 125

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
            P   +T  S+L ACA  + + E +QLH  ++K  +D NV+V   L+++Y +C  +  A 
Sbjct: 126 LP-DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSAR 184

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
            VF+ + E   V +++M+ G+ +     EAL LFR  Q   L+ N+ T+ SV+ +CA L 
Sbjct: 185 CVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLG 244

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           +L  GK +H    K  F   +   ++L+DM+AKCG + DA  +F  +  K+   W+ MI 
Sbjct: 245 SLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIV 304

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
            ++ H ++ + M++FE+M+   + P+E T++ +L+ACSH G VE+G+ YF  MV +  ++
Sbjct: 305 AYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P++ HY  M+D+L RAG + +AY+ I  +P   T  +W  LLA+C ++ NL+LAE  +++
Sbjct: 365 PSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSER 424

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-------- 482
           +F ++  + G++++LSN+YA N++WE V   RK+++D +  K    S +E+         
Sbjct: 425 IFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFS 484

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DVEDSRKQELLIHHSEKLALTFG 541
           G        +++  L+++V+E+K  GY P+T   +H ++ D  K+  L +HSEKLA+TFG
Sbjct: 485 GDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFG 544

Query: 542 LMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           L+   PG  IR++KNLR+C DCH+  K  S I GR+ ++RD+ RFHHF +G CSC DFW
Sbjct: 545 LLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 153/283 (54%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++CA  +A   G+  H   + +GL+++      LIN Y++C  +  AR VFD +
Sbjct: 131 TFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRI 190

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            + C+V +N +I  Y    R  EA++LF  M  +   P +E T+ SVL +CA    +   
Sbjct: 191 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP-NEITLLSVLSSCALLGSLDLG 249

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H +A K +  + V V TAL+D++AKCG + DA  +FE M  ++   WS+M+  +  +
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSNMFA 273
              E+++++F R +   ++ ++ T   ++ AC+    + +G++  + ++ K G   ++  
Sbjct: 310 GKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKH 369

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
             S+VD+ ++ G + DAY F+         +LW  +++  S H
Sbjct: 370 YGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSH 412


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/582 (35%), Positives = 333/582 (57%), Gaps = 17/582 (2%)

Query: 35  TLQATLQSCARERAPV--RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
           TL + L+SC      +   GK  H   +  GL+ D +    L++ Y+K G +  A ++F 
Sbjct: 213 TLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFR 272

Query: 93  EMPQRCIVSWNTIIGSYTTN---GRE--QEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
             P + +V +N +I  +       +E   EA+ LF  M R+G  P S+FT SS++  C  
Sbjct: 273 TSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKP-SDFTFSSIIKICNH 331

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
                  KQ+H    K  +  + F+G+ L+++Y+  G   D  + F S P+ + V+W++M
Sbjct: 332 IEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTM 391

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           +AG+ QN  +E AL LF      G + ++F I++++ ACA +AA   G+QVH    KTG 
Sbjct: 392 IAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGI 451

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
           G+     +S + MYAK G +  A   F  I+  +VV W+ MI   ++H  + + + LFE 
Sbjct: 452 GTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFEL 511

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M+  G+HPN+ T++ VL+ACSH G+VE+G  Y++ M K +++  NV H +C++D+L RAG
Sbjct: 512 MKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAG 571

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            + +A + ILN  F     MW +LL+ CR Y+++   +  A++L  ++P  + +++LL N
Sbjct: 572 RLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYN 631

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEK 499
           IY          + R+L++D  ++KE  +SW+E+         G  +HP    IY KLE 
Sbjct: 632 IYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEG 691

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLI-HHSEKLALTFGLMCLCPGVPIRIMKNLR 558
           ++E+ +K+GY  +   ++       K  L + HHSEKLA++FG++ L P  P+++MKNLR
Sbjct: 692 MLEKKRKIGYIDQKIQNVTISTKEVKGTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLR 751

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +C DCH+ MK  S +  RE I+RD  RFHHF  GSCSC D+W
Sbjct: 752 VCHDCHATMKLISVVEKREIILRDSLRFHHFKEGSCSCNDYW 793



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 212/430 (49%), Gaps = 14/430 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           +Q  ++  + + GK+ HA +I    N      N  +N YSK G +  A+K+FD M +R +
Sbjct: 16  VQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSV 75

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +S+N +I  Y   G   +A+ LF +  R       +F+ + VL AC   +D    K +H 
Sbjct: 76  ISYNILISGYGGMGFYHKAIGLF-SEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHG 134

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
            A+   + + VF+   L+D+Y KC  I  A  +FES  E + V+W+S++ G+ +   YEE
Sbjct: 135 LAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEE 194

Query: 220 ALILFRRAQVLGLEYNQFTISSVICAC-AGLAALIQ-GKQVHAVLCKTGFGSNMFAASSL 277
            L L  +    GL  N FT+ S + +C   L  ++  GK +H    K G   ++   ++L
Sbjct: 195 MLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTAL 254

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-----SVEVMILFEKMQQAG 332
           +DMYAK G + DA  +F     +NVV++N MI+GF +        + E + LF +MQ+ G
Sbjct: 255 LDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQG 314

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           + P++ T+ S++  C+HI   E GK     + K HN+  + F  S +I++    G   + 
Sbjct: 315 IKPSDFTFSSIIKICNHIEAFEYGKQIHAHICK-HNIQSDEFIGSTLIELYSLLGSTEDQ 373

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNI-- 448
                + P     S W +++A        E A     +L   G +PD      +LS    
Sbjct: 374 LKCFNSTPKLDIVS-WTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACAD 432

Query: 449 YAANRRWEEV 458
            AA R  E+V
Sbjct: 433 VAAERSGEQV 442


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 344/622 (55%), Gaps = 41/622 (6%)

Query: 19  SAIASASANANATELSTLQATLQSCARERAPVRGKV--CHAKIIGMGLNNDTLTSNILIN 76
           S     ++N+N   L +L         +R+    +V   HA++I  G + D      L+ 
Sbjct: 30  SPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLR 89

Query: 77  FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136
             SKC  I  A ++F       +  +  +I  + ++G   +A+ L+  ML +   P   +
Sbjct: 90  SCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILP-DNY 148

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM 196
            ++S+L AC ++  + E +++H  ALK  +  N  V   ++++Y KCG + DA RVFE M
Sbjct: 149 LMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEM 208

Query: 197 PE------------------------------RNEVTWSSMVAGFVQNELYEEALILFRR 226
           PE                              ++ V W++M+ GFV+NE    AL  FR 
Sbjct: 209 PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRG 268

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            Q   +  N+FTI  V+ AC+ L AL  G+ VH+ + K     N+F  ++L++MY++CG 
Sbjct: 269 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGS 328

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           + +A  VF  +++++V+ +NTMISG S + +S + + LF  M    L P   T++ VL+A
Sbjct: 329 IDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNA 388

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS 406
           CSH G+V+ G   F  M + + V P + HY CM+D+LGR G + EAYDLI  M       
Sbjct: 389 CSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHI 448

Query: 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466
           M G+LL++C+ ++NLEL E  AK L      ++G ++LLS++YA++ +W+E A+ R  ++
Sbjct: 449 MLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMK 508

Query: 467 DSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH 518
           ++ ++KE   S +E+         G   HPR   IY KLE+L   ++  GY PE E  L 
Sbjct: 509 EAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQ 568

Query: 519 DVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRET 578
           D+ED  K+  L  HSE+LA+ +GL+   P   IR+MKNLR+C DCHS +K  ++I  R+ 
Sbjct: 569 DIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKV 628

Query: 579 IVRDLNRFHHFTNGSCSCWDFW 600
           +VRD NRFH+F NG+CSC D+W
Sbjct: 629 VVRDRNRFHYFENGACSCGDYW 650


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/575 (35%), Positives = 328/575 (57%), Gaps = 18/575 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    +++C        G + H  ++  G   D+   + LI+ Y+    +  A+++F+  
Sbjct: 197 TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 256

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSWN +I  Y  +     A  +F  M+      ++     +++   A    + E 
Sbjct: 257 SARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWN-----TMINGYAIVGKIDEA 311

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K+L         +RN+    ++L  + KCG + DA  +F  MP R+ V+W+SM+A + Q 
Sbjct: 312 KRL----FDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 367

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL LF + + +G++  + T+ S++ ACA L AL +G  +H  +       N    
Sbjct: 368 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 427

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++LVDMYAKCG +  A  VF+ +E K+V+ WNT+I+G + H    E   LF++M++AG+ 
Sbjct: 428 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 487

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           PN+ T++++LSACSH GMV++G+   D M   + + P V HY C+ID+L RAG + EA +
Sbjct: 488 PNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAME 547

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
           LI  MP +   S  G+LL  CR + N EL E+  K+L  ++P ++G ++LLSNIYAA ++
Sbjct: 548 LIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKK 607

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           W++  + R L++ + + K    S +E+K        G  +HP   +IY KL ++   +K 
Sbjct: 608 WDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKS 667

Query: 507 -LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY  +T + L D+E+  K+  L  HSEKLA+ +GL+ L     IRI+KNLR+C DCH 
Sbjct: 668 AIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHH 727

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  S++ GRE IVRD NRFHHF +G CSC DFW
Sbjct: 728 VIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A  +F  +       ++S++     ++   EAL L+      GL+ +  T   VI AC  
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
            +    G  VH  + K+GF  + +  SSL+ +YA    +  A  +F+    ++VV WN M
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I G+ +H       ++F++M    +  +  ++ ++++  + +G +++ K  FD M ++  
Sbjct: 268 IDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER-- 321

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
              N+  ++ M+    + G + +A+ L   MP     S W S+LA
Sbjct: 322 ---NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVS-WNSMLA 362



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 3/179 (1%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +T+ + L +CA   A  +G   H  I    +  +++    L++ Y+KCG IS A +VF+ 
Sbjct: 390 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNA 449

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + +++WNTII     +G  +EA  LF  M   G  P ++ T  ++L AC+    V E
Sbjct: 450 MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEP-NDITFVAILSACSHAGMVDE 508

Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
            ++ L   +    ++  V     ++D+ A+ G + +A  +  +MP E N     +++ G
Sbjct: 509 GQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGG 567


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 329/559 (58%), Gaps = 12/559 (2%)

Query: 52  GKVCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           G+  H   + +GL   D   ++ L++ Y+K   +  A  VF  + ++ +V +  +I  Y 
Sbjct: 120 GQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYA 179

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
            +G + EA+ +F +M+  G  P +E+T++ +L  C    D+   + +H   +K+ ++  V
Sbjct: 180 QHGLDGEALKIFEDMVNRGVKP-NEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVV 238

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
              T+LL +Y++C +I D+ +VF  +   N+VTW+S V G VQN   E A+ +FR     
Sbjct: 239 ASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRC 298

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
            +  N FT+SS++ AC+ LA L  G+Q+HA+  K G   N +A ++L+++Y KCG +  A
Sbjct: 299 SISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKA 358

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  + E +VV  N+MI  ++++    E + LFE+++  GL PN  T+IS+L AC++ 
Sbjct: 359 RSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNA 418

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G+VE+G   F  +   HN+   + H++CMID+LGR+  + EA  LI  +  +    +W +
Sbjct: 419 GLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRT 477

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL SC+ +  +E+AE    ++  + P + G H+LL+N+YA+  +W +V   +  IRD ++
Sbjct: 478 LLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKL 537

Query: 471 KKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           KK  + SWV++         G  +HPR  EI+  L  L++++K LGY P T   L D+++
Sbjct: 538 KKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDE 597

Query: 523 SRKQELLIHHSEKLALTFGL-MCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
            +K   L +HSEKLA+ + L   +     IRI KNLR+CGDCHS++KF S + GR+ I R
Sbjct: 598 EKKISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIAR 657

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D  RFHHF  G CSC D+W
Sbjct: 658 DSKRFHHFKGGLCSCKDYW 676



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 225/415 (54%), Gaps = 26/415 (6%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
           +F SS IA +   A+   L+TL+A                 H  +I  G +   L  + L
Sbjct: 2   NFYSSLIAQS---AHTKSLTTLRAV----------------HTNVIKSGFSYSFL-GHKL 41

Query: 75  INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
           I+ Y KCG ++ ARK+FDE+P R IV+WN++I S+ ++G+ +EAV  + NML EG  P  
Sbjct: 42  IDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLP-D 100

Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVF 193
            +T S++  A +    +   ++ H  A+   ++  + FV +AL+D+YAK   + DA  VF
Sbjct: 101 AYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVF 160

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
             + E++ V +++++ G+ Q+ L  EAL +F      G++ N++T++ ++  C  L  L+
Sbjct: 161 RRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLV 220

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G+ +H ++ K+G  S + + +SL+ MY++C  + D+  VF+ ++  N V W + + G  
Sbjct: 221 NGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLV 280

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
           ++ R    + +F +M +  + PN  T  S+L ACS + M+E G+    + +K   +  N 
Sbjct: 281 QNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKL-GLDGNK 339

Query: 374 FHYSCMIDILGRAGLIHEA---YDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
           +  + +I++ G+ G + +A   +D++  +   A  SM  +   +   +  LEL E
Sbjct: 340 YAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFE 394



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 2/175 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + LQ+C+       G+  HA  + +GL+ +      LIN Y KCG +  AR VFD +
Sbjct: 306 TLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVL 365

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE- 153
            +  +V+ N++I +Y  NG   EA+ LF  +   G  P +  T  S+L AC     V E 
Sbjct: 366 TELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVP-NGVTFISILLACNNAGLVEEG 424

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           C+          ++  +   T ++D+  +   + +A+ + E +   + V W +++
Sbjct: 425 CQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLL 479


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 325/576 (56%), Gaps = 20/576 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L+ CAR  A   GK  H  ++ +G   D    + L++ YSKCG I   RKVFD M
Sbjct: 116 TLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRM 175

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS-SVLCACAAKRDVFE 153
             + +VSWN++I  Y   G  + A+ +F  M  +    ++      S      A RDVF+
Sbjct: 176 EDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFD 235

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
              +          RN     A+++ Y K G  + A  +F+ MPER+ VTW+SM+ G+ +
Sbjct: 236 RMPI----------RNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYER 285

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N+ + +AL LF       +  N  TI   + A +G+ +L  G+ VH+ + K+GF ++   
Sbjct: 286 NKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVL 345

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            + L++MY+KCG V  A  VF  I +K +  W ++I G   H    + + LF++M + GL
Sbjct: 346 GTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGL 405

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+I VL+ACSH G  E    YF +M   + + P++ HY C+ID+L RAG + EA 
Sbjct: 406 KPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAK 465

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           D I  MP  A   +W SLL+  R + N+ + E AA+ L  + PD  G +++LSN+YAA  
Sbjct: 466 DTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAG 525

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMK 505
            WE+V + R++++   +KK+   S +E        I G ++HP+  EIY KL ++ +++ 
Sbjct: 526 LWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLN 585

Query: 506 KLGYKPETEHDLHDV-EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
             G+ P+T   L  + ED+ K+  L  HSE+LA+ FGL+ +  G PIRI+KNLRIC DCH
Sbjct: 586 VAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCH 645

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  K  S I  RE I+RD +RFHHF +GSCSC DFW
Sbjct: 646 AVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 177/367 (48%), Gaps = 16/367 (4%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS--KCGLISGARKVFDE 93
           L   LQ+C  ER        HA  I     N    S+ L+  Y+  +   +  A  +FD 
Sbjct: 18  LHFPLQNCGTER---EANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDW 74

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + +  +VSWN +I  Y  N R  +A+ALF  +L +   P S FT+  VL  CA    + E
Sbjct: 75  IQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDF-VPDS-FTLPCVLKGCARLGALQE 132

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
            KQ+H   LK     + FV ++L+ +Y+KCG I    +VF+ M +++ V+W+S++ G+ +
Sbjct: 133 GKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYAR 192

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
               E AL +F        E + F+ + +I   +    L   + V   +       N  +
Sbjct: 193 CGEIELALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFDRMPI----RNSVS 244

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            +++++ Y K G    A  +F  + E+++V WN+MI+G+ R+ +  + + LFE M +  +
Sbjct: 245 WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDI 304

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  T +  +SA S +  +  G+     +VK       V   + +I++  + G +  A 
Sbjct: 305 SPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLG-TLLIEMYSKCGSVKSAL 363

Query: 394 DLILNMP 400
            +  ++P
Sbjct: 364 RVFRSIP 370



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 147/284 (51%), Gaps = 16/284 (5%)

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDA 189
           P+    +   L  C  +R   E  QLH  ++K A   +  V + LL +YA  +   +  A
Sbjct: 12  PFLPPNLHFPLQNCGTER---EANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYA 68

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
             +F+ + E   V+W+ ++  +++N+   +A+ LF +  +     + FT+  V+  CA L
Sbjct: 69  HSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARL 127

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
            AL +GKQ+H ++ K GFG + F  SSLV MY+KCG +     VF  +E+K+VV WN++I
Sbjct: 128 GALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLI 187

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
            G++R       + +FE+M +     +  ++  ++   S  G +E  +  FD M  +++V
Sbjct: 188 DGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSV 243

Query: 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
                 ++ MI+   +AG  + A +L   MP + +   W S++ 
Sbjct: 244 -----SWNAMINGYMKAGDSNTAKELFDQMP-ERSLVTWNSMIT 281


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/627 (34%), Positives = 333/627 (53%), Gaps = 68/627 (10%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL----ISGARKVF 91
           L     SC   + P   K  HA  I  G   D LT+  +I F   C      I  AR VF
Sbjct: 22  LSKPFTSC---KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKF---CAFSSRDIDYARAVF 75

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQ---EAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            +MP+     WNTI+        E    EA+ LF  ML +G+   + FT  SVL ACA  
Sbjct: 76  RQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARA 135

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA------------------- 189
             + E KQ+H   +K     + FV + L+ +Y  C ++ DA                   
Sbjct: 136 SRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMEL 195

Query: 190 ----------------------------SRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
                                         +F+ MP+R+ V+W+ M++G+ QN  + EA+
Sbjct: 196 DKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAI 255

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            LF+  Q   ++ N  T+ SV+ A A + AL  GK +H    K     +    S+LVDMY
Sbjct: 256 NLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMY 315

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           +KCG + +A  VF  + ++N + W+ +I  F+ H R+ + +I F  M +AG+ PN+  YI
Sbjct: 316 SKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYI 375

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
            +LSACSH G+VE+G+S+F  MVK   + P + HY CM+D+LGRAG + EA +LI NMP 
Sbjct: 376 GILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI 435

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461
           +    +W +LL +C+ ++NL++ E  A+ L  + P ++G+++ LSN+YA+   WE VAR 
Sbjct: 436 EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARV 495

Query: 462 RKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513
           R  ++  +++K+   SW+EI G          +H +  EI + L ++  +++  GY+P T
Sbjct: 496 RLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNT 555

Query: 514 EHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRI 573
                + ++  +   L +HSEK+A+ FGL+   P  P++I+KNLRIC DCH+ +K  S I
Sbjct: 556 LEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLI 615

Query: 574 AGRETIVRDLNRFHHFTNGSCSCWDFW 600
             R+ IVRD  RFH F +GSCSC D+W
Sbjct: 616 YKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L + AR  A   GK  H       +  D +  + L++ YSKCG I  A +VF+ +
Sbjct: 272 TLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETL 331

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R  ++W+ IIG++  +GR ++A+  F  M + G TP ++     +L AC+    V E 
Sbjct: 332 PKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTP-NDVAYIGILSACSHAGLVEEG 390

Query: 155 KQL--HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAG 210
           +    H+  +     R    G  ++D+  + G + +A  +  +MP E ++V W +++  
Sbjct: 391 RSFFSHMVKVVGLQPRIEHYG-CMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGA 448


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/601 (34%), Positives = 346/601 (57%), Gaps = 18/601 (2%)

Query: 11  FYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT 70
            Y + F S +    S +AN   +S+L A ++SC         ++ H K++          
Sbjct: 15  LYRRRFLSQSSFVHSLDAN---VSSLIAAVKSCVSIELC---RLLHCKVVKSVSYRHGFI 68

Query: 71  SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML--RE 128
            + L+  Y + G    A K+FDEMP+R +VSWN++I  Y+  G   +   +   M+    
Sbjct: 69  GDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEV 128

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G  P +E T  S++ AC       E + +H   +K  +   V V  A ++ Y K G ++ 
Sbjct: 129 GFRP-NEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTS 187

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           + ++FE +  +N V+W++M+   +QN L E+ L  F  ++ +G E +Q T  +V+ +C  
Sbjct: 188 SCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCED 247

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           +  +   + +H ++   GF  N    ++L+D+Y+K G + D+  VF  I   + + W  M
Sbjct: 248 MGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAM 307

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           ++ ++ H    + +  FE M   G+ P+  T+  +L+ACSH G+VE+GK YF+ M K++ 
Sbjct: 308 LAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYR 367

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428
           + P + HYSCM+D+LGR+GL+ +AY LI  MP + ++ +WG+LL +CR Y++ +L   AA
Sbjct: 368 IDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAA 427

Query: 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE-------- 480
           ++LF +EP +  N+++LSNIY+A+  W++ +R R L++   + +    S++E        
Sbjct: 428 ERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKF 487

Query: 481 IKGKRNHPRIAEIYSKLEKLVEEMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
           + G  +HP   +I  KL+++ ++MK ++GYK +TE  LHDV +  K+E++  HSEK+A+ 
Sbjct: 488 VVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMA 547

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+ + P  PI I KNLRICGDCH   K  S I  R  I+RD  RFHHF +GSCSC D+
Sbjct: 548 FGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDY 607

Query: 600 W 600
           W
Sbjct: 608 W 608


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 315/534 (58%), Gaps = 10/534 (1%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H   +  G + D    N +++FYSK   +   R +F+EMP+   VS+N +I SY+ 
Sbjct: 263 GQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQ 322

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
             + +E++ LF  M   G      F  +++L   A    +   +Q+H  A+ A  D  + 
Sbjct: 323 AEQYEESLNLFREMQCMG-FDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILH 381

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
           VG +L+D+YAKC +  +A  +F+S+ +R+ V+W+++++G+VQ  L+   L LF + +   
Sbjct: 382 VGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGAN 441

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
           L  +Q T ++V+ A AG A+L+ GKQ+HA + ++G   N+F+ S LVDMYAKCG + DA 
Sbjct: 442 LRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 501

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
            VF  + ++N V WN +IS ++ +      +  F KM Q+GL P+  + + VL ACSH G
Sbjct: 502 QVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCG 561

Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
            VE+G  +F  M   + + P   HY+CM+D+LGR G   EA  L+  MPF+    MW S+
Sbjct: 562 FVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSV 621

Query: 412 LASCRNYRNLELAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           L +CR Y+N  LAE AA+QLF ME   +A  ++ +SNIYAA  +WE V   +K +R+  +
Sbjct: 622 LNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGI 681

Query: 471 KKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           KK  + SWVE+  K        + HP   EI  K+ +L  E+++ GYKP+T   + D+++
Sbjct: 682 KKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDE 741

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGR 576
             K E L +HSE+LA+ F L+    G PI +MKNLR C DCH+ +K  S+I  R
Sbjct: 742 QMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKR 795



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 233/466 (50%), Gaps = 24/466 (5%)

Query: 56  HAKIIGMGLNNDTLTS--NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           HA  + +G + +   +  N+L+  Y +   +  A  +F+E+  +  V++NT+I  Y  +G
Sbjct: 164 HAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDG 223

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
              EA+ LF+ M + G  P S+FT S VL A     D    +QLH  ++     R+  VG
Sbjct: 224 LYTEAIHLFLKMRQSGHKP-SDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVG 282

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
             +L  Y+K   + +   +F  MPE + V+++ +++ + Q E YEE+L LFR  Q +G +
Sbjct: 283 NQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFD 342

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
              F  ++++   A L++L  G+QVH         S +   +SLVDMYAKC    +A  +
Sbjct: 343 RRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELI 402

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  + +++ V W  +ISG+ +       + LF KM+ A L  ++ T+ +VL A +    +
Sbjct: 403 FKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASL 462

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
             GK     +++  N L NVF  S ++D+  + G I +A  +   MP D  A  W +L++
Sbjct: 463 LLGKQLHAFIIRSGN-LENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALIS 520

Query: 414 SCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAAN-----RRWEEVARARKLIR 466
           +  +  + E A  A  ++   G++PD+     +L  + A +      +  E  +A   I 
Sbjct: 521 AYADNGDGEAAIGAFTKMIQSGLQPDSVS---ILGVLIACSHCGFVEQGTEFFQAMSPIY 577

Query: 467 DSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
               KK+     +++ G+         +++ EKL++EM    ++P+
Sbjct: 578 GITPKKKHYACMLDLLGRNGR------FAEAEKLMDEMP---FEPD 614



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 164/311 (52%), Gaps = 6/311 (1%)

Query: 51  RGKVCHA-KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109
           RG+V  A K+     + +T+++N +I+ Y K G +S AR +FD MP R +V+W  ++G Y
Sbjct: 57  RGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWY 116

Query: 110 TTNGREQEAVALFINMLREGKTP-YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168
             N    EA  LF  M R    P Y  FT  ++L  C          Q+H FA+K   D 
Sbjct: 117 AGNNHFDEAFKLFRQMCRSCTLPDYVTFT--TLLPGCNDAVPQNAVGQVHAFAVKLGFDT 174

Query: 169 NVF--VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
           N+F  V   LL  Y +   +  A  +FE + +++ VT+++++ G+ ++ LY EA+ LF +
Sbjct: 175 NLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLK 234

Query: 227 AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286
            +  G + + FT S V+ A  GL     G+Q+H +   TGF  +    + ++  Y+K   
Sbjct: 235 MRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDR 294

Query: 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
           V++   +F+ + E + V +N +IS +S+  +  E + LF +MQ  G       + ++LS 
Sbjct: 295 VLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSI 354

Query: 347 CSHIGMVEKGK 357
            +++  ++ G+
Sbjct: 355 AANLSSLQVGR 365



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 14/190 (7%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           AN  A + ST    L++ A   + + GK  HA II  G   +  + + L++ Y+KCG I 
Sbjct: 440 ANLRADQ-STFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 498

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            A +VF+EMP R  VSWN +I +Y  NG  + A+  F  M++ G  P S  ++  VL AC
Sbjct: 499 DAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDS-VSILGVLIAC 557

Query: 146 A------AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-E 198
           +         + F+     ++ +             +LD+  + G  ++A ++ + MP E
Sbjct: 558 SHCGFVEQGTEFFQAMS-PIYGITPKKKHYA----CMLDLLGRNGRFAEAEKLMDEMPFE 612

Query: 199 RNEVTWSSMV 208
            +E+ WSS++
Sbjct: 613 PDEIMWSSVL 622


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/441 (41%), Positives = 280/441 (63%), Gaps = 8/441 (1%)

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
           RN+ V TA++  Y++ G + DA  +F+ M E++ V WS+M++G+ +++  +EAL LF   
Sbjct: 12  RNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM 71

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           QV G++ +Q TI SVI ACA L  L + K +H  + K G G  +   ++L+DMYAKCG +
Sbjct: 72  QVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNL 131

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
             A  VF  ++ +NV+ W +MI+ F+ H  +   +  F +M+   + PN  T++ VL AC
Sbjct: 132 GAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYAC 191

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           SH G+VE+G+  F  M  +HN+ P   HY CM+D+ GRA L+ +A +L+  MP      +
Sbjct: 192 SHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVI 251

Query: 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467
           WGSL+A+C+ +   EL E AAKQ+  +EPD+ G  + LSNIYA +RRW++V   R L++ 
Sbjct: 252 WGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQ 311

Query: 468 SEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHD 519
             + KE+  S +E+  +        + H +  +IY KL+++V+E+K +GY P T   L D
Sbjct: 312 RGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVD 371

Query: 520 VEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579
           VE+  K+E+++ HSEKLAL +GLM    G  IRI+KNLR+C DCH+F+K  S++ G E I
Sbjct: 372 VEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEII 431

Query: 580 VRDLNRFHHFTNGSCSCWDFW 600
           VRD  RFHH+  G CSC D+W
Sbjct: 432 VRDRTRFHHYKAGVCSCNDYW 452



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 3/247 (1%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           +I+ YS+ G +  AR +FD+M ++ +V W+ +I  Y  + + QEA+ LF  M   G  P 
Sbjct: 20  MISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKP- 78

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
            + T+ SV+ ACA    +   K +H++  K  +   + V  AL+D+YAKCG +  A  VF
Sbjct: 79  DQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVF 138

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           E M  RN ++W+SM+  F  +     AL  F + +   ++ N  T   V+ AC+    + 
Sbjct: 139 EKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVE 198

Query: 254 QGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISG 311
           +G++  A +               +VD++ +   + DA  +   +    NVV+W ++++ 
Sbjct: 199 EGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAA 258

Query: 312 FSRHARS 318
              H  +
Sbjct: 259 CQIHGEN 265



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 17/207 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + + +CAR     R K  H  +   GL      +N LI+ Y+KCG +  AR VF++M
Sbjct: 82  TILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKM 141

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R ++SW ++I ++  +G    A+  F  M  E   P +  T   VL AC+    V E 
Sbjct: 142 QSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKP-NGVTFVGVLYACSHAGLVEEG 200

Query: 155 KQLHVFALKAAMDRNVFVG----TALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
           ++   FA     + N+         ++D++ +  L+ DA  + E+MP   N V W S++A
Sbjct: 201 RR--TFA-SMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMA 257

Query: 210 G---FVQNELYEEALILFRRAQVLGLE 233
                 +NEL E     F   QVL LE
Sbjct: 258 ACQIHGENELGE-----FAAKQVLELE 279


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/575 (37%), Positives = 328/575 (57%), Gaps = 47/575 (8%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           + +T   ++  Y+K   +  AR+ FD MP+R +VSWN ++  Y  NG  +E + LF  M+
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
             G  P  E T  +V+ AC+++ D      L     +  +  N FV TALLD+YAKCG I
Sbjct: 253 NAGIEP-DETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSI 311

Query: 187 SDASRVFE--------------------------------SMPERNEVTWSSMVAGFVQN 214
             A R+F+                                +MP RN VTW+SM+AG+ QN
Sbjct: 312 GAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQN 371

Query: 215 ELYEEALILFRRA-QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
                A+ LF+       L  ++ T+ SVI AC  L AL  G  V   L +     ++  
Sbjct: 372 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISG 431

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++++ MY++CG + DA  VF  +  ++VV +NT+ISGF+ H   VE + L   M++ G+
Sbjct: 432 HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGI 491

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+  T+I VL+ACSH G++E+G+  F+ +       P + HY+CM+D+LGR G + +A 
Sbjct: 492 EPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAK 546

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
             +  MP +  A ++GSLL + R ++ +EL E+AA +LF +EPDN+GN +LLSNIYA+  
Sbjct: 547 RTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAG 606

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           RW++V R R+ ++   VKK    SWVE  GK        R+H R  +IY  L +L ++M+
Sbjct: 607 RWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMR 666

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY  +    L DVE+  K+E++  HSEKLA+ + L+    G  IR++KNLR+C DCH+
Sbjct: 667 EAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHT 726

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  S++ GR  IVRD NRFH F +G CSC D+W
Sbjct: 727 AIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 176/372 (47%), Gaps = 76/372 (20%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNG 113
           HA ++ +G  +D    N +I+ Y++ G I  ARKVFDE+P  +R +  WN ++  Y    
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
            E +A  LF                           DV               +RNV   
Sbjct: 178 SEGQAQWLF---------------------------DVMP-------------ERNVITW 197

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           TA++  YAK   +  A R F+ MPER+ V+W++M++G+ QN L EE L LF      G+E
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIE 257

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV------ 287
            ++ T  +VI AC+          +   L +     N F  ++L+DMYAKCG +      
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRI 317

Query: 288 ----------------VDAYF----------VFSGIEEKNVVLWNTMISGFSRHARSVEV 321
                           + AY           +F+ +  +NVV WN+MI+G++++ +S   
Sbjct: 318 FDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMA 377

Query: 322 MILFEKMQQA-GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
           + LF++M  A  L P+E T +SV+SAC H+G +E G ++    + ++ +  ++  ++ MI
Sbjct: 378 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMI 436

Query: 381 DILGRAGLIHEA 392
            +  R G + +A
Sbjct: 437 FMYSRCGSMEDA 448



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 121/229 (52%), Gaps = 4/229 (1%)

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           +G   +++T N +I+ Y++ G +  AR++F+ MP R +V+WN++I  Y  NG+   A+ L
Sbjct: 321 LGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL 380

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M+   K    E T+ SV+ AC     +     +  F  +  +  ++    A++ +Y+
Sbjct: 381 FKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYS 440

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           +CG + DA RVF+ M  R+ V+++++++GF  +    EA+ L    +  G+E ++ T   
Sbjct: 441 RCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIG 500

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           V+ AC+    L +G++V   +            + +VD+  + G + DA
Sbjct: 501 VLTACSHAGLLEEGRKVFESIKDPAIDH----YACMVDLLGRVGELEDA 545


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 321/575 (55%), Gaps = 47/575 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C+     V G+  H     +GL++     N L++ Y KCG +S AR V DEM
Sbjct: 142 TFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 201

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            +R +VSWN+++  Y  N R  +A+ +   M    K  +   T++S+L A +        
Sbjct: 202 SRRDVVSWNSLVVGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSN------- 253

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
                         NV        +Y K         +F  M +++ V+W+ M+  +++N
Sbjct: 254 ----------TTTENV--------MYVK--------DMFFKMGKKSLVSWNVMIGVYMKN 287

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            +  EA+ L+ R +  G E +  +I+SV+ AC   +AL  GK++H  + +     N+   
Sbjct: 288 AMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L+DMYAKCGC+  A  VF  ++ ++VV W  MIS +    R  + + LF K+Q +GL 
Sbjct: 348 NALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLV 407

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           P+   +++ L+ACSH G++E+G+S F LM   + + P + H +CM+D+LGRAG + EAY 
Sbjct: 408 PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYR 467

Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
            I +M  +    +WG+LL +CR + + ++  +AA +LF + P+ +G ++LLSNIYA   R
Sbjct: 468 FIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGR 527

Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
           WEEV   R +++   +KK    S VE+         G R+HP+  EIY +L+ LV++MK+
Sbjct: 528 WEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKE 587

Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL-----CPGVPIRIMKNLRICG 561
           LGY P++E  LHDVE+  K+  L  HSEKLA+ F LM            IRI KNLRICG
Sbjct: 588 LGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICG 647

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           DCH   K  S+I  RE I+RD NRFH F  G CSC
Sbjct: 648 DCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 179/362 (49%), Gaps = 36/362 (9%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           +  H++II   L  ++     L+  Y+    ++ ARKVFDE+P+R ++  N +I SY  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G   E V +F  M      P   +T   VL AC+    +   +++H  A K  +   +FV
Sbjct: 119 GFYGEGVKVFGTMCGCNVRP-DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
           G  L+ +Y KCG +S+A  V + M  R+ V+W+S+V G+ QN+ +++AL + R  + + +
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
            ++  T++S++ A +                 T   + M+      DM+ K G       
Sbjct: 238 SHDAGTMASLLPAVSN----------------TTTENVMYVK----DMFFKMG------- 270

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
                 +K++V WN MI  + ++A  VE + L+ +M+  G  P+  +  SVL AC     
Sbjct: 271 ------KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +  GK      +++  ++PN+   + +ID+  + G + +A D+  NM      S W +++
Sbjct: 325 LSLGKKIHGY-IERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS-WTAMI 382

Query: 413 AS 414
           ++
Sbjct: 383 SA 384



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   + +H   +   +  N  +G  L+  YA    ++ A +VF+ +PERN +  + M+ 
Sbjct: 54  DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +V N  Y E + +F       +  + +T   V+ AC+    ++ G+++H    K G  S
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
            +F  + LV MY KCG + +A  V   +  ++VV WN+++ G++++ R  + + +  +M+
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233

Query: 330 QAGLHPNEQTYISVLSACSHIGM--VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
              +  +  T  S+L A S+     V   K  F  M K+  V  NV     MI +  +  
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNV-----MIGVYMKNA 288

Query: 388 LIHEAYDLILNMP---FDATASMWGSLLASCRNYRNLELAE 425
           +  EA +L   M    F+  A    S+L +C +   L L +
Sbjct: 289 MPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGK 329


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 333/559 (59%), Gaps = 16/559 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN--- 112
           H  ++  GL+ D   ++ +I+ Y+K G ++ A  +F  +P   ++ +N +I  +  +   
Sbjct: 229 HGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAA 288

Query: 113 -GRE--QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
            G+E  +EA++L+  M   G  P SEFT SS+L AC    +    KQ+H   LK +   +
Sbjct: 289 VGKEVSREALSLYSEMQSRGMQP-SEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDD 347

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
            ++G+AL+D+Y+  G + D  R F S+P+++ VTW+SM++G VQNEL+E+AL LF+ +  
Sbjct: 348 DYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESIC 407

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            GL+ + FT+SSV+ ACA LA    G+Q+  +  K GF       +S + M A+ G V  
Sbjct: 408 YGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDA 467

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
               F  +E ++VV W+ +IS  ++H  + + + +F +M  A + PNE T+++VL+ACSH
Sbjct: 468 VTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSH 527

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+V+ G  Y+++M  ++ + P + H +C++D+LGRAG + +A   I +  F   A +W 
Sbjct: 528 GGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWR 587

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           SLLASCR + ++E  ++ A Q+  +EP ++ ++++L N+Y         ++ R L+++  
Sbjct: 588 SLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERG 647

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVE 521
           VKKE   SW+E++        G ++HP    IY KL +++ +++KL    +      D  
Sbjct: 648 VKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEKLA-NTDNASTGSDGI 706

Query: 522 DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVR 581
            S +Q L+  HSEK+A+ FG++ L    PIR+MKNLR+C DCHS MK  S    RE I+R
Sbjct: 707 SSSEQNLVGCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISGSENREIILR 766

Query: 582 DLNRFHHFTNGSCSCWDFW 600
           D  RFHHF  GSCSC D+W
Sbjct: 767 DGIRFHHFRGGSCSCGDYW 785



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 189/348 (54%), Gaps = 13/348 (3%)

Query: 43  CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSW 102
           C+R      GK  HA  +  GL N    SN L + Y+ CG +  AR+VFD   +   VSW
Sbjct: 113 CSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSW 172

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE--CKQLHVF 160
           N+++  Y   G  +E + +F  M   G   ++ F + S++  CA+  DV     + +H  
Sbjct: 173 NSLLSGYVRAGAREETLKVFSLMCHHG-LGWNSFALGSIIKCCASGSDVGRHIAEAVHGC 231

Query: 161 ALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF------VQN 214
            +KA +D ++F+ +A++D+YAK G +++A  +F+S+P+ N + +++M+AGF      V  
Sbjct: 232 VVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGK 291

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E+  EAL L+   Q  G++ ++FT SS++ AC        GKQ+H  + K  F  + +  
Sbjct: 292 EVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIG 351

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           S+L+D+Y+  GC+ D Y  F  + ++++V W +MISG  ++    + + LF++    GL 
Sbjct: 352 SALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLK 411

Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVK----QHNVLPNVFHYSC 378
           P+  T  SV++AC+ + +   G+    L +K    +   + N F + C
Sbjct: 412 PDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMC 459



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 200/381 (52%), Gaps = 20/381 (5%)

Query: 72  NILINFYSKCGLISG--ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
           N L+  Y + G+ +   A ++ DEMP+R  VS+N +I SY+  G    A+  F       
Sbjct: 38  NSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAA 97

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
                 FT ++ L AC+   D+   K +H   +   +   VF+  +L  +YA CG + +A
Sbjct: 98  GLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEA 157

Query: 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249
            RVF++  E ++V+W+S+++G+V+    EE L +F      GL +N F + S+I  CA  
Sbjct: 158 RRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASG 217

Query: 250 AALIQ--GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
           + + +   + VH  + K G  +++F AS+++DMYAK G + +A  +F  + + NV+++N 
Sbjct: 218 SDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNA 277

Query: 308 MISGFSRHARSV------EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           MI+GF R   +V      E + L+ +MQ  G+ P+E T+ S+L AC+  G    GK    
Sbjct: 278 MIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHG 337

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421
            ++K H+   + +  S +ID+   +G + + Y    ++P     + W S+++ C      
Sbjct: 338 QVLK-HSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVT-WTSMISGCVQN--- 392

Query: 422 ELAEIAAKQL-----FGMEPD 437
           EL E A +       +G++PD
Sbjct: 393 ELFEKALRLFQESICYGLKPD 413


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/539 (35%), Positives = 324/539 (60%), Gaps = 13/539 (2%)

Query: 74  LINFYSKCGL---ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK 130
           LINF ++      +S AR +F+ M +  IV +N++   Y+      E  +LF+ +L +G 
Sbjct: 66  LINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGI 125

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190
            P   +T  S+L ACA  + + E +QLH  ++K  +D NV+V   L+++Y +C  +  A 
Sbjct: 126 LP-DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSAR 184

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250
            VF+ + E   V +++M+ G+ +     EAL LFR  Q   L+ N+ T+ SV+ +CA L 
Sbjct: 185 XVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLG 244

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310
           +L  GK +H    K  F   +   ++L+DM+AKCG + DA  +F  +  K+   W+ MI 
Sbjct: 245 SLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIV 304

Query: 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370
            ++ H ++ + M++FE+M+   + P+E T++ +L+ACSH G VE+G+ YF  MV +  ++
Sbjct: 305 AYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364

Query: 371 PNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430
           P++ HY  M+D+L  AG + +AY+ I  +P   T  +W  LLA+C ++ NL+LAE  +++
Sbjct: 365 PSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSER 424

Query: 431 LFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-------- 482
           +F ++  + G++++LSN+YA N++WE V   RK+++D +  K    S +E+         
Sbjct: 425 IFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFS 484

Query: 483 GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DVEDSRKQELLIHHSEKLALTFG 541
           G        +++  L+++V+E+K  GY P+T   +H ++ D  K+  L +HSEKLA+TFG
Sbjct: 485 GDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFG 544

Query: 542 LMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           L+   PG  IR++KNLR+C DCH+  K  S I GR+ + RD+ RFHHF +G CSC DFW
Sbjct: 545 LLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 152/283 (53%), Gaps = 3/283 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++CA  +A   G+  H   + +GL+++      LIN Y++C  +  AR VFD +
Sbjct: 131 TFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRI 190

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            + C+V +N +I  Y    R  EA++LF  M  +   P +E T+ SVL +CA    +   
Sbjct: 191 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP-NEITLLSVLSSCALLGSLDLG 249

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H +A K +  + V V TAL+D++AKCG + DA  +FE M  ++   WS+M+  +  +
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA-VLCKTGFGSNMFA 273
              E+++++F R +   ++ ++ T   ++ AC+    + +G++  + ++ K G   ++  
Sbjct: 310 GKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKH 369

Query: 274 ASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRH 315
             S+VD+ +  G + DAY F+         +LW  +++  S H
Sbjct: 370 YGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSH 412


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/477 (38%), Positives = 302/477 (63%), Gaps = 10/477 (2%)

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           ++ T  +VL        + E +++H     A ++ +V VGTAL+++Y KC  + +A   F
Sbjct: 9   NKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAF 68

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRR--AQVLGLEYNQFTISSVICACAGLAA 251
           E +   N V+WS+M+A + QN     AL L+R   +   G+  N+ T  +++ AC+ L A
Sbjct: 69  EKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGA 128

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L +G+++HA + + GF +++   ++LV+ Y +CG + DA  VF G+  ++V+ W++MIS 
Sbjct: 129 LAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISA 188

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
           F++  R  E M L+ +M   G  P++  +ISVL ACS+ G+VE    +F  +V    V P
Sbjct: 189 FAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEP 248

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
            + HY+CM+D+LGRAG + +A DL+  MPF     ++ ++L++C+ Y ++E  E AA+ +
Sbjct: 249 TLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVV 308

Query: 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKG 483
           F ++P+N+  ++ L+NIY+A +R ++ AR RKL+ +  +KK+   SW+E        I G
Sbjct: 309 FELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAG 368

Query: 484 KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM 543
            + HP+  EIY+++++L  +MK+ GY  +T+  L DVE+  K+ LL +HSEKLA+ FGL+
Sbjct: 369 DKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLI 428

Query: 544 CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
              PG P+RI+KNLR+C DCH+  K  S++ GRE +VRD NRFHHF +G CSC D+W
Sbjct: 429 STPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 143/310 (46%), Gaps = 38/310 (12%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           G+  H+++ G GL  D +    L+N Y KC  +  AR  F+++ +  +VSW+ ++ +Y  
Sbjct: 29  GRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQ 88

Query: 112 NGREQEAVALFINM--LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           NG  + A+ L+  M   R+G  P +  T  ++L AC+    + E +++H    +   D +
Sbjct: 89  NGHARMALELYREMGSARKGMAP-NRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTD 147

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           + V  AL++ Y +CG + DA  VF+ M  R+ ++WSSM++ F Q    +EA+ L+ R   
Sbjct: 148 LVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLS 207

Query: 230 LGLEYNQFTISSVICACAGLAAL-IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288
            G   +     SV+ AC+    +   G    +++  T     +   + +VD+  + G + 
Sbjct: 208 EGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLR 267

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           DA                                   + ++    HP    Y+++LSAC 
Sbjct: 268 DAE----------------------------------DLLRLMPFHPGPLLYMTMLSACK 293

Query: 349 HIGMVEKGKS 358
               VE+G++
Sbjct: 294 LYTDVERGEA 303



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L +C+   A   G+  HA +   G + D +  N L+NFY +CG +  A+ VFD M
Sbjct: 115 TFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGM 174

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA------AK 148
            +R ++SW+++I ++   GR  EA+ L+  ML EG  P  +    SVL AC+      A 
Sbjct: 175 RRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLP-DDIIFISVLFACSNSGVVEAS 233

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            D F             ++  +     ++DV  + G + DA  +   MP
Sbjct: 234 GDFFRS-----IVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMP 277


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 328/570 (57%), Gaps = 11/570 (1%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           + +  R    + GK  HA  I  GL+++    N LI+ Y+KC  +      F+ M ++ +
Sbjct: 356 IAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDL 415

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           +SW TII  Y  N    EA+ LF  +  +G        + SVL AC+  +     +++H 
Sbjct: 416 ISWTTIIAGYAQNECHLEAINLFRKVQVKG-MDVDPMMIGSVLRACSGLKSRNFIREIHG 474

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           +  K  +  ++ +  A+++VY + G    A R FES+  ++ V+W+SM+   V N L  E
Sbjct: 475 YVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVE 533

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           AL LF   +   ++ +   I S + A A L++L +GK++H  L + GF      ASSLVD
Sbjct: 534 ALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVD 593

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
           MYA CG V ++  +F  +++++++LW +MI+    H    E + LF+KM    + P+  T
Sbjct: 594 MYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHIT 653

Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
           ++++L ACSH G++ +GK +F++M   + + P   HY+CM+D+L R+  + EAY  + +M
Sbjct: 654 FLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSM 713

Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
           P   ++ +W +LL +C  + N EL E+AAK+L   +  N+G + L+SNI+AA+ RW +V 
Sbjct: 714 PIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVE 773

Query: 460 RARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM-KKLGYK 510
             R  ++ + +KK    SW+E+  K        ++HP+  +IY KL +  + + KK GY 
Sbjct: 774 EVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYI 833

Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
            +T+   H+V +  K ++L  HSE+LAL +GL+    G  IRI KNLRIC DCH+F K A
Sbjct: 834 AQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIA 893

Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           S ++ R  +VRD NRFHHF  G CSC DFW
Sbjct: 894 SEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 174/321 (54%), Gaps = 3/321 (0%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           A +  T  + L++C        G   H   +  G        N LI  Y KCG + GAR 
Sbjct: 142 AIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 90  VFDE--MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           +FD   M +   VSWN+II ++ T G+  EA++LF  M +E     + +T  + L     
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRM-QEVGVASNTYTFVAALQGVED 260

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
              V     +H  ALK+    +V+V  AL+ +YAKCG + DA RVF SM  R+ V+W+++
Sbjct: 261 PSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTL 320

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           ++G VQNELY +AL  FR  Q    + +Q ++ ++I A      L+ GK+VHA   + G 
Sbjct: 321 LSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGL 380

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
            SNM   ++L+DMYAKC CV    + F  + EK+++ W T+I+G++++   +E + LF K
Sbjct: 381 DSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRK 440

Query: 328 MQQAGLHPNEQTYISVLSACS 348
           +Q  G+  +     SVL ACS
Sbjct: 441 VQVKGMDVDPMMIGSVLRACS 461



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 214/436 (49%), Gaps = 26/436 (5%)

Query: 15  SFSSSAIASASANANATELSTLQATLQS-CARERAPVRGKVCHAKIIGMGLNNDTLTSNI 73
           +F S  + S    A  + L    + L   C   +A  +G+  HA+++   L+     +  
Sbjct: 27  AFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLS--AFLATK 84

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           L++ Y KCG +  A KVFDEM +R I +WN ++G++ ++G+  EA+ L+  M   G    
Sbjct: 85  LLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLG-VAI 143

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
              T  SVL AC A  +     ++H  A+K      VFV  AL+ +Y KCG +  A  +F
Sbjct: 144 DACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLF 203

Query: 194 ES--MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           +   M + + V+W+S+++  V      EAL LFRR Q +G+  N +T  + +      + 
Sbjct: 204 DGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSF 263

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           +  G  +H    K+   ++++ A++L+ MYAKCG + DA  VF+ +  ++ V WNT++SG
Sbjct: 264 VKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSG 323

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY--------FDLM 363
             ++    + +  F  MQ +   P++ + +++++A    G +  GK           D  
Sbjct: 324 LVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSN 383

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLE 422
           ++  N L +++   C +  +G A       DLI           W +++A   +N  +LE
Sbjct: 384 MQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLI----------SWTTIIAGYAQNECHLE 433

Query: 423 LAEIAAK-QLFGMEPD 437
              +  K Q+ GM+ D
Sbjct: 434 AINLFRKVQVKGMDVD 449



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           + L + A   +  +GK  H  +I  G   +   ++ L++ Y+ CG +  +RK+F  + QR
Sbjct: 555 SALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR 614

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            ++ W ++I +   +G   EA+ALF  M  E   P    T  ++L AC+    + E K+ 
Sbjct: 615 DLILWTSMINANGMHGCGNEAIALFKKMTDENVIP-DHITFLALLYACSHSGLMVEGKRF 673


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 316/541 (58%), Gaps = 25/541 (4%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTN-GREQEAVALFINMLREGKTPYSEFTVSSVL 142
           ++ A +VFD +       WNT+I +   +  R++EA  L+  ML  G++   + T   VL
Sbjct: 90  VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 149

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            ACA      E KQ+H   +K     +V+V   L+ +Y  CG +  A +VF+ MPER+ V
Sbjct: 150 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 209

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+SM+   V+   Y+ AL LFR  Q    E + +T+ SV+ ACAGL +L  G   HA L
Sbjct: 210 SWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFL 268

Query: 263 ---CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
              C      ++   +SL++MY KCG +  A  VF G++++++  WN MI GF+ H R+ 
Sbjct: 269 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 328

Query: 320 EVMILFEKM--QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           E M  F++M  ++  + PN  T++ +L AC+H G V KG+ YFD+MV+ + + P + HY 
Sbjct: 329 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 388

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-ASCRNYRNLELAEIAAKQLFGMEP 436
           C++D++ RAG I EA D++++MP    A +W SLL A C+   ++EL+E  A+ + G + 
Sbjct: 389 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 448

Query: 437 DN-------AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG------ 483
           DN       +G ++LLS +YA+  RW +V   RKL+ +  ++KE   S +EI G      
Sbjct: 449 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 508

Query: 484 --KRNHPRIAEIYSKLEKLVEEMKKLGYKPE-TEHDLHD-VEDSRKQELLIHHSEKLALT 539
               +HP+  +IY +L+ + + ++ +GY P+ ++  L D   D  K+  L  HSE+LA+ 
Sbjct: 509 AGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIA 568

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+ L P  PIRI KNLR+C DCH   K  S++   E IVRD  RFHHF +GSCSC D+
Sbjct: 569 FGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDY 628

Query: 600 W 600
           W
Sbjct: 629 W 629



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 13/296 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA       GK  H +I+  G   D   +N LI+ Y  CG +  ARKVFDEM
Sbjct: 144 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 203

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN++I +    G    A+ LF  M R  +     +T+ SVL ACA    +   
Sbjct: 204 PERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGSLSLG 261

Query: 155 KQLHVFALK-----AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
              H F L+      AMD  V V  +L+++Y KCG +  A +VF+ M +R+  +W++M+ 
Sbjct: 262 TWAHAFLLRKCDVDVAMD--VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 319

Query: 210 GFVQNELYEEALILFRRA--QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-G 266
           GF  +   EEA+  F R   +   +  N  T   ++ AC     + +G+Q   ++ +   
Sbjct: 320 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 379

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
               +     +VD+ A+ G + +A   V S   + + V+W +++    +   SVE+
Sbjct: 380 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 435



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 6/212 (2%)

Query: 150 DVFECKQLHVFALKAAMDR---NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           D+ + KQLH F L+         +F+   +L + +    ++ A RVF+S+   +   W++
Sbjct: 51  DMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNT 110

Query: 207 MVAGFVQN-ELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264
           ++     +    EEA +L+R+    G    ++ T   V+ ACA +    +GKQVH  + K
Sbjct: 111 LIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 170

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            GFG +++  + L+ +Y  CGC+  A  VF  + E+++V WN+MI    R       + L
Sbjct: 171 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQL 230

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           F +MQ++   P+  T  SVLSAC+ +G +  G
Sbjct: 231 FREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 261



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFG---SNMFAASSLVDMYAKCGCVVDAYFVFS 295
           I S+   C+ ++ L   KQ+HA   +T +    + +F    ++ + +    V  A+ VF 
Sbjct: 42  IFSLAETCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 98

Query: 296 GIEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMV 353
            IE  +  +WNT+I   +   +R  E  +L+ KM + G   P++ T+  VL AC++I   
Sbjct: 99  SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 158

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            +GK     +VK H    +V+  + +I + G  G +  A  +   MP  +  S W S++ 
Sbjct: 159 SEGKQVHCQIVK-HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS-WNSMID 216

Query: 414 SCRNYRNLELAEIAAKQLF-----GMEPDNAGNHLLLS 446
           +   +   +    +A QLF       EPD      +LS
Sbjct: 217 ALVRFGEYD----SALQLFREMQRSFEPDGYTMQSVLS 250


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 325/566 (57%), Gaps = 24/566 (4%)

Query: 56  HAKIIGMGLNNDTL--------TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107
           HA I+  GL N+ L        +SN+    Y+   L   +       P      +NT+I 
Sbjct: 38  HAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTLIR 97

Query: 108 SYT-TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
           +Y+ T   +  +   +  MLR G TP ++FT   VL  CA    +   K +H   +K   
Sbjct: 98  AYSQTRDSKSNSFLFYRTMLRYGVTP-NKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGF 156

Query: 167 DRNVFVGTALLDVYAKCGLISD----ASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
           + +V V   L+ +Y  C L  D    A +VF+  P+ + VTWS+M+AGFV+      A+ 
Sbjct: 157 EEDVHVLNTLIHMY--CCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVD 214

Query: 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282
           LFR  QV+G+  ++ T+ SV+ ACA L AL  GK V + + K     ++   ++L+DM+A
Sbjct: 215 LFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFA 274

Query: 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           KCG V  A  +F  ++ + +V W ++I+G + H R ++ + LF++M + G+ P++  +I 
Sbjct: 275 KCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIG 334

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           VLSACSH G+V+KG+ YF  M +  +++P V HY CM+D+L R G + EA++ +  MPF+
Sbjct: 335 VLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFE 394

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462
               +W +++ +C     L+L E  +K+L   EP +  N++LLSNIYA  R+WE+  + R
Sbjct: 395 PNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVR 454

Query: 463 KLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETE 514
           +++    +KK    + +E+         G ++H +  EIY  ++++  E+KK GY P T 
Sbjct: 455 EMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTS 514

Query: 515 HDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIA 574
             L D+++  K++ L  HSEKLA+ F L+   PG  IRI+KNLR+C DCHS  KF S++ 
Sbjct: 515 QVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVY 574

Query: 575 GRETIVRDLNRFHHFTNGSCSCWDFW 600
            RE +VRD NRFHHF NG CSC DFW
Sbjct: 575 NREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA   A   GK   + +    +       N LI+ ++KCG +  A K+F +M
Sbjct: 230 TMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQM 289

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R IVSW ++I     +GR  +AV+LF  M+  G TP  +     VL AC+    V   
Sbjct: 290 DSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITP-DDVAFIGVLSACSHSGLV--D 346

Query: 155 KQLHVFALKAAMDRNVFVGTA------LLDVYAKCGLISDASRVFESMP-ERNEVTWSSM 207
           K  + F    +M+RN  +         ++D+  + G + +A    + MP E N++ W ++
Sbjct: 347 KGRYYF---GSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTI 403

Query: 208 VAG 210
           +  
Sbjct: 404 ITA 406



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 20/157 (12%)

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM--------YAKCGCVVDAYFVFSGI 297
           C  L+ L Q   +HA + KTG  +N    +             YA       ++   +  
Sbjct: 28  CNTLSKLTQ---IHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPT 84

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEK-MQQAGLHPNEQTYISVLSACSHIGMVEKG 356
              +  L+NT+I  +S+   S     LF + M + G+ PN+ T+  VL  C+ IG +  G
Sbjct: 85  PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144

Query: 357 KSYFDLMVK-----QHNVLPNVFHYSCMIDILGRAGL 388
           K     +VK       +VL  + H  C    LG  G 
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYC---CLGEDGF 178


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/588 (38%), Positives = 326/588 (55%), Gaps = 71/588 (12%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
              N L++ Y+KCG +  A KVF+ M  + +V+WN ++  Y+ NGR ++A++LF  M RE
Sbjct: 75  FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKM-RE 133

Query: 129 GKTPYSEFTVSSV-----------------------------------LCACAAKRDVFE 153
            K      T SSV                                   L ACA+   +  
Sbjct: 134 EKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLH 193

Query: 154 CKQLHVFALKAAMD-------RNVFVGTALLDVYAKCGLISDASRVFESM--PERNEVTW 204
            K+ H +++K  +         ++ V  AL+D+YAKC  +  A  +F+ +   +R+ VTW
Sbjct: 194 GKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTW 253

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHA-V 261
           + M+ G+ Q+     AL LF     +   +  N FTIS V+ ACA LAAL  GKQ+HA V
Sbjct: 254 TVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYV 313

Query: 262 LCKTGFGSN-MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           L ++   S+ +F A+ L+DMY+K G V  A  VF  + ++N V W ++++G+  H     
Sbjct: 314 LRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG---- 369

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
                     A L  +  T++ VL ACSH GMV++G   F  M K   V P V HY+CM 
Sbjct: 370 ----------AALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMA 419

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+ GRAG + EA  LI +M  + T  +W +LL++CR + N ELAE AAK+L  ++ DN G
Sbjct: 420 DLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDG 479

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAE 492
            + LLSNIYA  RRW++VAR R L++ + +KK    SWV+ +        G R H +  +
Sbjct: 480 TYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQK 539

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY  L  L++ +K +GY P+T   LHDV+D  K + L+ HSEKLAL + ++ L PG PIR
Sbjct: 540 IYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYAILTLPPGAPIR 599

Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           I KNLRICGD HS + + S I   E I+RD +RFH F NGSCSC  +W
Sbjct: 600 ITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 647



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 166/361 (45%), Gaps = 68/361 (18%)

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           VSWN+I+  Y+      +AV LF    RE    Y       +L       ++        
Sbjct: 24  VSWNSIVSVYSHCFVPNDAVFLF----REMTVGY------GILPDTVGVVNILPVSGFLG 73

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
           F          FVG AL+D+YAKCG + DAS+VFE M  ++ VTW++MV G+ QN  +E+
Sbjct: 74  F----------FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFED 123

Query: 220 ALILFRRAQVLGLEYNQFTISSVI-----------------------------------C 244
           AL LF + +   +E +  T SSVI                                    
Sbjct: 124 ALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLS 183

Query: 245 ACAGLAALIQGKQVHAVLCK-------TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           ACA + AL+ GK+ H    K            ++   ++L+DMYAKC  +  A  +F  I
Sbjct: 184 ACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 243

Query: 298 --EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG--LHPNEQTYISVLSACSHIGMV 353
             ++++VV W  MI G+++H  +   + LF +M +    + PN+ T   VL AC+ +  +
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 303

Query: 354 EKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           + GK     ++++  +  +V F  +C+ID+  ++G +  A  ++ +      A  W SLL
Sbjct: 304 KFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTA-QVVFDSMSKRNAVSWTSLL 362

Query: 413 A 413
            
Sbjct: 363 T 363



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 148/325 (45%), Gaps = 59/325 (18%)

Query: 35  TLQATLQSCARERAPVRGKVCH---AKIIGMGLNNDTLTS----NILINFYSKCGLISGA 87
           TL + L +CA   A + GK  H    K I  G +ND        N LI+ Y+KC  +  A
Sbjct: 177 TLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVA 236

Query: 88  RKVFDEM--PQRCIVSWNTIIGSYTTNGREQEAVALFINMLR-EGKTPYSEFTVSSVLCA 144
           R +FDE+    R +V+W  +IG Y  +G    A+ LF  M + +     ++FT+S VL A
Sbjct: 237 RAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMA 296

Query: 145 CAAKRDVFECKQLHVFAL-KAAMDRNV-FVGTALLDVYAKCGLISDASRVFESMPERNEV 202
           CA    +   KQ+H + L ++ +D +V FV   L+D+Y+K G +  A  VF+SM +RN V
Sbjct: 297 CARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAV 356

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+S++ G+    ++  AL+L           +  T   V+ AC+    + +G  +   +
Sbjct: 357 SWTSLLTGY---GMHGAALVL-----------DGITFLVVLYACSHSGMVDRGIDLFYRM 402

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K       F     V+ YA   C+ D                      F R  R  E  
Sbjct: 403 SKD------FVVDPGVEHYA---CMADL---------------------FGRAGRLCEAT 432

Query: 323 ILFEKMQQAGLHPNEQTYISVLSAC 347
            L   M    + P    +I++LSAC
Sbjct: 433 RLINDMS---MEPTPVVWIALLSAC 454


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 316/541 (58%), Gaps = 25/541 (4%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTN-GREQEAVALFINMLREGKTPYSEFTVSSVL 142
           ++ A +VFD +       WNT+I +   +  R++EA  L+  ML  G++   + T   VL
Sbjct: 156 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 215

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            ACA      E KQ+H   +K     +V+V   L+ +Y  CG +  A +VF+ MPER+ V
Sbjct: 216 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 275

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+SM+   V+   Y+ AL LFR  Q    E + +T+ SV+ ACAGL +L  G   HA L
Sbjct: 276 SWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFL 334

Query: 263 ---CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
              C      ++   +SL++MY KCG +  A  VF G++++++  WN MI GF+ H R+ 
Sbjct: 335 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 394

Query: 320 EVMILFEKM--QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           E M  F++M  ++  + PN  T++ +L AC+H G V KG+ YFD+MV+ + + P + HY 
Sbjct: 395 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 454

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-ASCRNYRNLELAEIAAKQLFGMEP 436
           C++D++ RAG I EA D++++MP    A +W SLL A C+   ++EL+E  A+ + G + 
Sbjct: 455 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 514

Query: 437 DN-------AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG------ 483
           DN       +G ++LLS +YA+  RW +V   RKL+ +  ++KE   S +EI G      
Sbjct: 515 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 574

Query: 484 --KRNHPRIAEIYSKLEKLVEEMKKLGYKPE-TEHDLHD-VEDSRKQELLIHHSEKLALT 539
               +HP+  +IY +L+ + + ++ +GY P+ ++  L D   D  K+  L  HSE+LA+ 
Sbjct: 575 AGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIA 634

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+ L P  PIRI KNLR+C DCH   K  S++   E IVRD  RFHHF +GSCSC D+
Sbjct: 635 FGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDY 694

Query: 600 W 600
           W
Sbjct: 695 W 695



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 13/296 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA       GK  H +I+  G   D   +N LI+ Y  CG +  ARKVFDEM
Sbjct: 210 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 269

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN++I +    G    A+ LF  M R  +     +T+ SVL ACA    +   
Sbjct: 270 PERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGSLSLG 327

Query: 155 KQLHVFALK-----AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
              H F L+      AMD  V V  +L+++Y KCG +  A +VF+ M +R+  +W++M+ 
Sbjct: 328 TWAHAFLLRKCDVDVAMD--VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 385

Query: 210 GFVQNELYEEALILFRRA--QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-G 266
           GF  +   EEA+  F R   +   +  N  T   ++ AC     + +G+Q   ++ +   
Sbjct: 386 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 445

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
               +     +VD+ A+ G + +A   V S   + + V+W +++    +   SVE+
Sbjct: 446 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 501



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 6/212 (2%)

Query: 150 DVFECKQLHVFALKAAMDR---NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
           D+ + KQLH F L+         +F+   +L + +    ++ A RVF+S+   +   W++
Sbjct: 117 DMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNT 176

Query: 207 MVAGFVQN-ELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLAALIQGKQVHAVLCK 264
           ++     +    EEA +L+R+    G    ++ T   V+ ACA +    +GKQVH  + K
Sbjct: 177 LIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 236

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMIL 324
            GFG +++  + L+ +Y  CGC+  A  VF  + E+++V WN+MI    R       + L
Sbjct: 237 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQL 296

Query: 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           F +MQ++   P+  T  SVLSAC+ +G +  G
Sbjct: 297 FREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 327



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFG---SNMFAASSLVDMYAKCGCVVDAYFVFS 295
           I S+   C+ ++ L   KQ+HA   +T +    + +F    ++ + +    V  A+ VF 
Sbjct: 108 IFSLAETCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 164

Query: 296 GIEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMV 353
            IE  +  +WNT+I   +   +R  E  +L+ KM + G   P++ T+  VL AC++I   
Sbjct: 165 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 224

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            +GK     +VK H    +V+  + +I + G  G +  A  +   MP  +  S W S++ 
Sbjct: 225 SEGKQVHCQIVK-HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS-WNSMID 282

Query: 414 SCRNYRNLELAEIAAKQLF-----GMEPDNAGNHLLLS 446
           +   +   +    +A QLF       EPD      +LS
Sbjct: 283 ALVRFGEYD----SALQLFREMQRSFEPDGYTMQSVLS 316


>gi|357115878|ref|XP_003559712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 650

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/601 (34%), Positives = 328/601 (54%), Gaps = 18/601 (2%)

Query: 17  SSSAIASASANANATELST-LQATLQSCARERAPVRGKVCHAKIIGMGLNNDT---LTSN 72
           SSS   SA+ +  A + +  L + L   A   +P  G   HA+ +  G  +D    +   
Sbjct: 51  SSSPTLSAARDRIADDPTPRLFSALFKAASSASPSMGAQLHAQAVVRGFLDDAGSIILPT 110

Query: 73  ILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
            ++NFY+ C     AR+VFD M     V+WN +I  Y   GR +EA+ LF+ M R+    
Sbjct: 111 AILNFYASCREPDLARRVFDAMACTNAVTWNALIKGYAQAGRREEALELFLAMRRQSHVA 170

Query: 133 YSEFTVSSVLCACAAKRDVFECKQ-----LHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
              +T  ++L     ++    C Q     +H  A+K+ ++R+ FVG +L+ +YA  G + 
Sbjct: 171 PDRYTFPALLSGIGREQGG-GCMQELGGAVHGQAIKSGLNRDPFVGASLVSMYAARGALD 229

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
           +   VF+ +   + V WSS+++ +V  +  E AL+ F R     ++  QF  SS+   C 
Sbjct: 230 EVKVVFDDVDTLDPVVWSSLISAYVNCKEEEGALLTFYRMLCRDIKPRQFVYSSMFAVCG 289

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
            ++ L  G+QVHA   K+    +    ++L+ MY+ CGC+ DA  VF+  +  +VV +N+
Sbjct: 290 SMSMLEMGRQVHAHSLKSNTDKDAAMTNALLTMYSDCGCIRDALRVFNSNDIVDVVSYNS 349

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           +I    +H    E   L+ +M  AGL P++ T +++LSA +H G+V +G   F+ M+   
Sbjct: 350 IILALGQHGHPKEATELYRQMNCAGLMPDDVTLLNLLSAFNHAGLVHEGLHIFNSMLDME 409

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427
            + P   HY+C+ D+L R+G I EA   I  MPF+A A +W  +L +C  +R++      
Sbjct: 410 GIKPTYQHYACVADMLARSGQIGEAMKTIYEMPFEAEAPLWRIILGACSKHRDIRTGTKI 469

Query: 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--- 484
           A+ LF MEP  A N++LL NIY    RW E  + R ++    + ++ + SW+EI  +   
Sbjct: 470 AEMLFEMEPYEATNYILLGNIYTRLGRWTEAEKVRNMMEKRGIDRDDAFSWIEISQRTHR 529

Query: 485 -----RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
                R+HP   EIY  L++L+  +K  GY P+     H+++  R++E L +H EKLA  
Sbjct: 530 FGVDDRSHPISREIYRNLDRLIGSIKVAGYVPDISFAAHNIKKDRREESLHYHCEKLAFA 589

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FG +    G  +RIMKNLR+CGDCH   K+ S I GRE I+RD +RFHHF  G+CSC D+
Sbjct: 590 FGDLATPSGDTLRIMKNLRVCGDCHCAYKYFSLITGREIILRDNHRFHHFNKGACSCGDY 649

Query: 600 W 600
           W
Sbjct: 650 W 650


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 330/576 (57%), Gaps = 14/576 (2%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L T+ + + +C        G+  H  ++      D    N LI  YS  GLI  A  VF
Sbjct: 307 DLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVF 366

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
                R +VSW  +I  Y      Q+A+  +  M  EG  P  E T++ VL AC+   ++
Sbjct: 367 SRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMP-DEITIAIVLSACSCLCNL 425

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
                LH  A +  +     V  +L+D+YAKC  I  A  +F S  E+N V+W+S++ G 
Sbjct: 426 DMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGL 485

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             N    EAL  FR   +  L+ N  T+  V+ ACA + AL  GK++HA   +TG   + 
Sbjct: 486 RINNRCFEALFFFRE-MIRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDG 544

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
           F  ++++DMY +CG +  A+  F  ++ + V  WN +++G++   +      LF++M ++
Sbjct: 545 FMPNAILDMYVRCGRMEYAWKQFFSVDHE-VTSWNILLTGYAERGKGAHATELFQRMVES 603

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
            + PNE T+IS+L ACS  GMV +G  YF+ M  +++++PN+ HY+C++D+LGR+G + E
Sbjct: 604 NVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEE 663

Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
           AY+ I  MP     ++WG+LL SCR + ++EL E+AA+ +F  +  + G ++LLSN+YA 
Sbjct: 664 AYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYAD 723

Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEE 503
           N +W++VA  RK++R + +  +   SWVE+KG  +        HP+I EI + LE+  ++
Sbjct: 724 NGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKK 783

Query: 504 MKKLGYK-PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
           MK+ G + PE+ H   D+ ++ K ++   HSE+LA+ FGL+   PG+PI + KNL +C  
Sbjct: 784 MKEAGVEGPESSH--MDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQS 841

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
           CH+ +KF SR   RE  VRD  +FHHF  G CSC D
Sbjct: 842 CHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 198/386 (51%), Gaps = 13/386 (3%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           ++ T    L++C      VRG+  H  +I  G  +D    N LI  Y KCG ++ AR VF
Sbjct: 206 DVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVF 265

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
           D+MP R  +SWN +I  Y  NG   E + LF  M++    P    T++SV+ AC    D 
Sbjct: 266 DKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDP-DLMTMTSVITACELLGDD 324

Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              +Q+H + L+    R+  +  +L+ +Y+  GLI +A  VF     R+ V+W++M++G+
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY 384

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
               + ++AL  ++  +  G+  ++ TI+ V+ AC+ L  L  G  +H V  + G  S  
Sbjct: 385 ENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYS 444

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
             A+SL+DMYAKC C+  A  +F    EKN+V W ++I G   + R  E +  F +M + 
Sbjct: 445 IVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR 504

Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV----FHYSCMIDILGRAG 387
            L PN  T + VLSAC+ IG +  GK      +  H +   V    F  + ++D+  R G
Sbjct: 505 -LKPNSVTLVCVLSACARIGALTCGKE-----IHAHALRTGVSFDGFMPNAILDMYVRCG 558

Query: 388 LIHEAYDLILNMPFDATASMWGSLLA 413
            +  A+    ++  + T+  W  LL 
Sbjct: 559 RMEYAWKQFFSVDHEVTS--WNILLT 582



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 197/380 (51%), Gaps = 5/380 (1%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQ 96
           A ++ C  +RA   G   ++  + + +++ +L   N L++ + + G +  A  VF  M +
Sbjct: 111 ALIRLCEWKRARKEGSRVYS-YVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEK 169

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
           R + SWN ++G Y   G   EA+ L+  ML  G  P   +T   VL  C    ++   ++
Sbjct: 170 RNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKP-DVYTFPCVLRTCGGMPNLVRGRE 228

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +HV  ++   + +V V  AL+ +Y KCG ++ A  VF+ MP R+ ++W++M++G+ +N +
Sbjct: 229 IHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGV 288

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
             E L LF       ++ +  T++SVI AC  L     G+Q+H  + +T FG +    +S
Sbjct: 289 CLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNS 348

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L+ MY+  G + +A  VFS  E +++V W  MISG+       + +  ++ M+  G+ P+
Sbjct: 349 LIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPD 408

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
           E T   VLSACS +  ++ G +  ++  KQ  ++      + +ID+  +   I +A + I
Sbjct: 409 EITIAIVLSACSCLCNLDMGMNLHEV-AKQKGLVSYSIVANSLIDMYAKCKCIDKALE-I 466

Query: 397 LNMPFDATASMWGSLLASCR 416
            +   +     W S++   R
Sbjct: 467 FHSTLEKNIVSWTSIILGLR 486



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 143/271 (52%), Gaps = 1/271 (0%)

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           +++ + E + P  +    +++  C  KR   E  +++ +   +    ++ +G ALL ++ 
Sbjct: 93  YLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFV 152

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           + G + DA  VF  M +RN  +W+ +V G+ +  L++EAL L+ R   +G++ + +T   
Sbjct: 153 RFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPC 212

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           V+  C G+  L++G+++H  + + GF S++   ++L+ MY KCG V  A  VF  +  ++
Sbjct: 213 VLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRD 272

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
            + WN MISG+  +   +E + LF  M +  + P+  T  SV++AC  +G    G+    
Sbjct: 273 RISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHG 332

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
            +++         H S +I +    GLI EA
Sbjct: 333 YVLRTEFGRDPSIHNS-LIPMYSSVGLIEEA 362


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/555 (37%), Positives = 322/555 (58%), Gaps = 28/555 (5%)

Query: 56  HAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           H +++  GL  D + ++ L+ F      G ++ AR VFD + +     WNT+I  Y+ + 
Sbjct: 38  HGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSK 97

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
             +EA+ L+ +ML     P++ +T   +L AC++   + E +Q+H   +K      ++  
Sbjct: 98  EPEEALLLYHHMLYH-SVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT 156

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            +LL+VY+K G I  A  +F+ + +R+                  EAL LF R Q  G++
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNLFHRMQTAGIK 199

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            +   + S + ACA L  L QGK +HA + K     +      L+DMYAKCG + +A  V
Sbjct: 200 LDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEV 259

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +EEK V +W  MISG++ H R  E +  F KMQ AG+ PN+ T+  +L+ACSH G+V
Sbjct: 260 FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLV 319

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            + K  F+ M + H   P++ HY CM+D+LGRAGL+ EA +LI NMP    A++WG+LL 
Sbjct: 320 HEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLN 379

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
           +C  + NLEL +   K L  ++P + G ++ L++I+AA   W + AR R+ +++  V K 
Sbjct: 380 ACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKL 439

Query: 474 KSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
              S + +         G  +HP+I EI   LE++VE +++ GYKP+    L D+ED  K
Sbjct: 440 PGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEK 499

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           +  + HHSEKLA+TFGL+   PG+ IRI+KNLR+C DCH+ +K  S++  RE ++RD  R
Sbjct: 500 ETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTR 559

Query: 586 FHHFTNGSCSCWDFW 600
           FH F +G+C+C D+W
Sbjct: 560 FHLFKDGNCTCGDYW 574



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 146/317 (46%), Gaps = 34/317 (10%)

Query: 2   KSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIG 61
           ++LL Y H  Y+         S   NA      T    L++C+   A    +  HA II 
Sbjct: 101 EALLLYHHMLYH---------SVPHNA-----YTFPFLLKACSSMSALEETQQIHAHIIK 146

Query: 62  MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL 121
           MG  ++  T+N L+N YSK G I  AR +FD++ Q                 R+ EA+ L
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ-----------------RDTEALNL 189

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           F  M   G        + S L ACA    + + K +H +  K  ++ +  +G  L+D+YA
Sbjct: 190 FHRMQTAG-IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYA 248

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KCG + +A  VF  M E+    W++M++G+  +    EAL  F + Q  G+E NQ T + 
Sbjct: 249 KCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTG 308

Query: 242 VICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           ++ AC+    + + K +   + +  GF  ++     +VD+  + G + +A  +   +  K
Sbjct: 309 ILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK 368

Query: 301 -NVVLWNTMISGFSRHA 316
            N  +W  +++    H 
Sbjct: 369 PNAAIWGALLNACHIHG 385


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/610 (36%), Positives = 336/610 (55%), Gaps = 45/610 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD-- 92
           T    +++ A  R  + GK  H   I     +D    N LI+FY+ CG +  A  VF+  
Sbjct: 242 TFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMI 301

Query: 93  EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
           E   + IVSWN+++  +   G   +A+ LF  M  EG  P +  T+ SV+ ACA   ++ 
Sbjct: 302 EGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHP-NAVTMVSVMSACAKTMNLT 360

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS------ 206
             +++  +  +  M  N+ V  A +D++ KCG +  A  +F++M +R+ V+W++      
Sbjct: 361 LGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420

Query: 207 -------------------------MVAGFVQNELYEEALILFRRAQVL--GLEYNQFTI 239
                                    +++G+ Q+   +EAL +FR  Q+   G   +Q T+
Sbjct: 421 KMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTL 480

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
            S + ACA L A+  G+ +H  + K     N   A+SL+DMY+K G V  A  VF  I  
Sbjct: 481 LSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGN 540

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           K+V +W+ MI+G + H R    + LF  MQ+  + PN  T+ ++L ACSH G+V++GK  
Sbjct: 541 KDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           FD M + + V+P   HYSCM+D+LGRAG + EA   I  MP   +AS+WG+LL +C  + 
Sbjct: 601 FDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHG 660

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           NLELAE A  +L  +EP N G ++LLSN+YA    WE V+  R+ +RDS +KKE   S +
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720

Query: 480 EIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR-KQELLI 530
           EI         G   HP   +IY+KL++++  ++  GY   T   L  VE+   K++ L 
Sbjct: 721 EIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALK 780

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
            HSEK+A+ FGL+       IRI+KNLR+C DCH+  K  S++ GR+ ++RD  RFHHF+
Sbjct: 781 LHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFS 840

Query: 591 NGSCSCWDFW 600
            G CSC D+W
Sbjct: 841 GGHCSCQDYW 850



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 243/511 (47%), Gaps = 55/511 (10%)

Query: 22  ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF--YS 79
           +   A+A AT +   +A  Q C   +   + K  HA+++     +D   ++ L     +S
Sbjct: 129 SPTPASATATNVGD-RALFQQCTSFK---QLKQIHAQMLRTNKLHDPYAASELFTAAAFS 184

Query: 80  KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
               +  ARKVFD++PQ  + SWN +I +  T+    ++V +FI ML +     ++FT  
Sbjct: 185 SFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFP 244

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
            ++ A A +R     K +H  A+K +   +VFV  +L+  YA CG +  A  VFE +   
Sbjct: 245 VLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGN 304

Query: 200 NE--VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           N+  V+W+SMV GFVQ    ++AL LF R +  G+  N  T+ SV+ ACA    L  G++
Sbjct: 305 NKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRK 364

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCG---------------------CVVDAYF---- 292
           V   + +     N+   ++ +DM+ KCG                      ++D Y     
Sbjct: 365 VCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSE 424

Query: 293 ------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ--QAGLHPNEQTYISVL 344
                 +F  +  K++  WN +ISG+ +  R  E + +F ++Q  ++G  P++ T +S L
Sbjct: 425 HGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTL 484

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           SAC+ +G ++ G+ +    +K+  +  N    + +ID+  ++G + +A ++  ++  +  
Sbjct: 485 SACAQLGAMDIGE-WIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKD 542

Query: 405 ASMWGSLLASCRNYRNLELAEIAAKQLF--GMEPDNAGNHLLLSNIYAANRRWEEVARAR 462
             +W +++A    +   E    AA +LF    E     N +  +N+  A      V   +
Sbjct: 543 VFVWSAMIAGLAMHGRGE----AAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGK 598

Query: 463 KLIRDSE-----VKKEKSKS-WVEIKGKRNH 487
           +L  + E     V K K  S  V++ G+  H
Sbjct: 599 RLFDEMERVYGVVPKTKHYSCMVDVLGRAGH 629


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 316/541 (58%), Gaps = 25/541 (4%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTN-GREQEAVALFINMLREGKTPYSEFTVSSVL 142
           ++ A +VFD +       WNT+I +   +  R++EA  L+  ML  G++   + T   VL
Sbjct: 76  VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 135

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            ACA      E KQ+H   +K     +V+V   L+ +Y  CG +  A +VF+ MPER+ V
Sbjct: 136 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 195

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+SM+   V+   Y+ AL LFR  Q    E + +T+ SV+ ACAGL +L  G   HA L
Sbjct: 196 SWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFL 254

Query: 263 ---CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
              C      ++   +SL++MY KCG +  A  VF G++++++  WN MI GF+ H R+ 
Sbjct: 255 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 314

Query: 320 EVMILFEKM--QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           E M  F++M  ++  + PN  T++ +L AC+H G V KG+ YFD+MV+ + + P + HY 
Sbjct: 315 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 374

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-ASCRNYRNLELAEIAAKQLFGMEP 436
           C++D++ RAG I EA D++++MP    A +W SLL A C+   ++EL+E  A+ + G + 
Sbjct: 375 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 434

Query: 437 DN-------AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG------ 483
           DN       +G ++LLS +YA+  RW +V   RKL+ +  ++KE   S +EI G      
Sbjct: 435 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 494

Query: 484 --KRNHPRIAEIYSKLEKLVEEMKKLGYKPE-TEHDLHD-VEDSRKQELLIHHSEKLALT 539
               +HP+  +IY +L+ + + ++ +GY P+ ++  L D   D  K+  L  HSE+LA+ 
Sbjct: 495 AGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIA 554

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+ L P  PIRI KNLR+C DCH   K  S++   E IVRD  RFHHF +GSCSC D+
Sbjct: 555 FGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDY 614

Query: 600 W 600
           W
Sbjct: 615 W 615



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 13/296 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA       GK  H +I+  G   D   +N LI+ Y  CG +  ARKVFDEM
Sbjct: 130 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 189

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN++I +    G    A+ LF  M R  +     +T+ SVL ACA    +   
Sbjct: 190 PERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGSLSLG 247

Query: 155 KQLHVFALK-----AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
              H F L+      AMD  V V  +L+++Y KCG +  A +VF+ M +R+  +W++M+ 
Sbjct: 248 TWAHAFLLRKCDVDVAMD--VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 305

Query: 210 GFVQNELYEEALILFRRA--QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-G 266
           GF  +   EEA+  F R   +   +  N  T   ++ AC     + +G+Q   ++ +   
Sbjct: 306 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 365

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
               +     +VD+ A+ G + +A   V S   + + V+W +++    +   SVE+
Sbjct: 366 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 421



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 9/223 (4%)

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDR---NVFVGTALLDVYAKCGLISDASRVFES 195
           ++VL  C+   D+ + KQLH F L+         +F+   +L + +    ++ A RVF+S
Sbjct: 29  ATVLQTCS---DMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDS 85

Query: 196 MPERNEVTWSSMVAGFVQN-ELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLAALI 253
           +   +   W++++     +    EEA +L+R+    G    ++ T   V+ ACA +    
Sbjct: 86  IENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFS 145

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
           +GKQVH  + K GFG +++  + L+ +Y  CGC+  A  VF  + E+++V WN+MI    
Sbjct: 146 EGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 205

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           R       + LF +MQ++   P+  T  SVLSAC+ +G +  G
Sbjct: 206 RFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 247



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFG---SNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           ++V+  C+ ++ L   KQ+HA   +T +    + +F    ++ + +    V  A+ VF  
Sbjct: 29  ATVLQTCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDS 85

Query: 297 IEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVE 354
           IE  +  +WNT+I   +   +R  E  +L+ KM + G   P++ T+  VL AC++I    
Sbjct: 86  IENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFS 145

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS 414
           +GK     +VK H    +V+  + +I + G  G +  A  +   MP  +  S W S++ +
Sbjct: 146 EGKQVHCQIVK-HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS-WNSMIDA 203

Query: 415 CRNYRNLELAEIAAKQLF-----GMEPDNAGNHLLLS 446
              +   +    +A QLF       EPD      +LS
Sbjct: 204 LVRFGEYD----SALQLFREMQRSFEPDGYTMQSVLS 236


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 316/541 (58%), Gaps = 25/541 (4%)

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTN-GREQEAVALFINMLREGKTPYSEFTVSSVL 142
           ++ A +VFD +       WNT+I +   +  R++EA  L+  ML  G++   + T   VL
Sbjct: 99  VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 158

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            ACA      E KQ+H   +K     +V+V   L+ +Y  CG +  A +VF+ MPER+ V
Sbjct: 159 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 218

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
           +W+SM+   V+   Y+ AL LFR  Q    E + +T+ SV+ ACAGL +L  G   HA L
Sbjct: 219 SWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFL 277

Query: 263 ---CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
              C      ++   +SL++MY KCG +  A  VF G++++++  WN MI GF+ H R+ 
Sbjct: 278 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 337

Query: 320 EVMILFEKM--QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
           E M  F++M  ++  + PN  T++ +L AC+H G V KG+ YFD+MV+ + + P + HY 
Sbjct: 338 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 397

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-ASCRNYRNLELAEIAAKQLFGMEP 436
           C++D++ RAG I EA D++++MP    A +W SLL A C+   ++EL+E  A+ + G + 
Sbjct: 398 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 457

Query: 437 DN-------AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG------ 483
           DN       +G ++LLS +YA+  RW +V   RKL+ +  ++KE   S +EI G      
Sbjct: 458 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 517

Query: 484 --KRNHPRIAEIYSKLEKLVEEMKKLGYKPE-TEHDLHD-VEDSRKQELLIHHSEKLALT 539
               +HP+  +IY +L+ + + ++ +GY P+ ++  L D   D  K+  L  HSE+LA+ 
Sbjct: 518 AGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIA 577

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+ L P  PIRI KNLR+C DCH   K  S++   E IVRD  RFHHF +GSCSC D+
Sbjct: 578 FGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDY 637

Query: 600 W 600
           W
Sbjct: 638 W 638



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 13/296 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA       GK  H +I+  G   D   +N LI+ Y  CG +  ARKVFDEM
Sbjct: 153 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM 212

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSWN++I +    G    A+ LF  M R  +     +T+ SVL ACA    +   
Sbjct: 213 PERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGSLSLG 270

Query: 155 KQLHVFALK-----AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
              H F L+      AMD  V V  +L+++Y KCG +  A +VF+ M +R+  +W++M+ 
Sbjct: 271 TWAHAFLLRKCDVDVAMD--VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMIL 328

Query: 210 GFVQNELYEEALILFRRA--QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-G 266
           GF  +   EEA+  F R   +   +  N  T   ++ AC     + +G+Q   ++ +   
Sbjct: 329 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 388

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
               +     +VD+ A+ G + +A   V S   + + V+W +++    +   SVE+
Sbjct: 389 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 444



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 18/270 (6%)

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS-------VLCACAAKRDV 151
           IVS  T I  Y        ++ L ++ L     P S  + S+       +        D+
Sbjct: 7   IVSPPTTITYY-----HPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61

Query: 152 FECKQLHVFALKAAMDR---NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
            + KQLH F L+         +F+   +L + +    ++ A RVF+S+   +   W++++
Sbjct: 62  SQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLI 121

Query: 209 AGFVQN-ELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
                +    EEA +L+R+    G    ++ T   V+ ACA +    +GKQVH  + K G
Sbjct: 122 RACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHG 181

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
           FG +++  + L+ +Y  CGC+  A  VF  + E+++V WN+MI    R       + LF 
Sbjct: 182 FGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFR 241

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKG 356
           +MQ++   P+  T  SVLSAC+ +G +  G
Sbjct: 242 EMQRS-FEPDGYTMQSVLSACAGLGSLSLG 270



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 239 ISSVICACAGLAALIQGKQVHAVLCKTGFG---SNMFAASSLVDMYAKCGCVVDAYFVFS 295
           I S+   C+ ++ L   KQ+HA   +T +    + +F    ++ + +    V  A+ VF 
Sbjct: 51  IFSLAETCSDMSQL---KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 107

Query: 296 GIEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMV 353
            IE  +  +WNT+I   +   +R  E  +L+ KM + G   P++ T+  VL AC++I   
Sbjct: 108 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
            +GK     +VK H    +V+  + +I + G  G +  A  +   MP  +  S W S++ 
Sbjct: 168 SEGKQVHCQIVK-HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS-WNSMID 225

Query: 414 SCRNYRNLELAEIAAKQLF-----GMEPDNAGNHLLLS 446
           +   +   +    +A QLF       EPD      +LS
Sbjct: 226 ALVRFGEYD----SALQLFREMQRSFEPDGYTMQSVLS 259


>gi|302818616|ref|XP_002990981.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
 gi|300141312|gb|EFJ08025.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
          Length = 578

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/590 (36%), Positives = 327/590 (55%), Gaps = 29/590 (4%)

Query: 21  IASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK 80
           +A   A  +  E+ T++A +++C                    L  D + +  ++N Y K
Sbjct: 8   VAILGACGHPWEVDTIRARVEACGS------------------LELDVIVATAVMNAYGK 49

Query: 81  CGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
           CG +  AR +FD +  R    WN +I     + +  EA+ L   M  +G TP S+ T  +
Sbjct: 50  CGDLDSARGLFDRILVRDAAVWNAMISLLVVHEQGDEALELCRQMRLDGVTP-SKGTCVA 108

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV-YAKCGLISDASRVFESMPER 199
            L AC   RD  E  ++H FA +   D +  V TAL+++ YA+ G + DA  +F++M  R
Sbjct: 109 ALNACCHSRDFSEGLRIHAFARELGGDADTVVQTALVNIMYARLGSLEDAREIFDAMTTR 168

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N ++W++MV    Q  L  EAL +FR   + G+  N  T ++V+ A   LA++   K V 
Sbjct: 169 NVISWTAMVGVHSQLGLNREALRIFRSILLEGVTPNDVTFTAVLNASGNLASIRAAKLVQ 228

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           A L +TGF  N+  A+ L+    KCG + +    F  +  +N V WN+ I+  ++H   V
Sbjct: 229 ACLSETGFLGNVEVANGLLCALGKCGSLEEVAKFFRVMPVQNQVSWNSAIAANAQHGNGV 288

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
             + LF+ MQ  G+     T I VLS+CSH G+V +G SYF  M   + +     HYSC+
Sbjct: 289 RGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFLNMHVDYGLPAEAEHYSCV 348

Query: 380 IDILGRAGLIHEAYDLILNMPF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
           ID+L RAG +  A + +  +PF D +   W +LL  C+ + +LE    A +++ G+ P +
Sbjct: 349 IDLLSRAGWLEHAEEFVKRLPFGDESVFPWITLLCGCKLHGDLERGGRATQRILGLNPGS 408

Query: 439 AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRI 490
            G +L++ N+YA   +W E A  RK + D   KKE   SW+E+KG+         +HPR 
Sbjct: 409 TGPYLVMHNLYAGAGKWPEAAAVRKSMVDLGPKKEPGLSWIEVKGRIHEFRVGDTSHPRS 468

Query: 491 AEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVP 550
           +EI+ +LE+L ++MK+ G+  +T+  ++D++   K+ LL  HSEKLA+ FGL+    G P
Sbjct: 469 SEIHRELERLNDKMKRAGFVCDTKAVVYDLQAKEKESLLCQHSEKLAIAFGLISTAAGEP 528

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +RIMKNLR+C DCHS  KF S + GRE +VRD  RFHHF  G+CSC DFW
Sbjct: 529 LRIMKNLRVCSDCHSATKFISGLVGREIVVRDAYRFHHFRGGACSCEDFW 578


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/627 (34%), Positives = 331/627 (52%), Gaps = 68/627 (10%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL----ISGARKVF 91
           L     SC   + P   K  HA  I  G   D LT+  +I F   C      I  AR VF
Sbjct: 22  LSKPFTSC---KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKF---CAFSSRDIDYARAVF 75

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQ---EAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
            +MP+     WNTI+        E    EA+ LF  ML +G+   + FT  SVL ACA  
Sbjct: 76  RQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARA 135

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA------------------- 189
             + E KQ+H   +K     + FV + L+ +Y  C ++ DA                   
Sbjct: 136 SRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMEL 195

Query: 190 ----------------------------SRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221
                                         +F+ MP R+ V+W+ M++G+ QN  + EA+
Sbjct: 196 DKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAI 255

Query: 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            LF+  Q   ++ N  T+ SV+ A A + AL  GK +H    K     +    S+LVDMY
Sbjct: 256 NLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMY 315

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
           +KCG +  A  VF  + ++N + W+ +I  F+ H R+ + +I F  M +AG+ PN+  YI
Sbjct: 316 SKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYI 375

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
            +LSACSH G+VE+G+S+F  MVK   + P + HY CM+D+LGRAG + EA +LI NMP 
Sbjct: 376 GILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI 435

Query: 402 DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461
           +    +W +LL +C+ ++NL++ E  A+ L  + P ++G+++ LSN+YA+   WE VAR 
Sbjct: 436 EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARV 495

Query: 462 RKLIRDSEVKKEKSKSWVEIKG--------KRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513
           R  ++  +++K+   SW+EI G          +H +  EI + L ++  +++  GY+P T
Sbjct: 496 RLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNT 555

Query: 514 EHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRI 573
                + ++  +   L +HSEK+A+ FGL+   P  P++I+KNLRIC DCH+ +K  S I
Sbjct: 556 LEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLI 615

Query: 574 AGRETIVRDLNRFHHFTNGSCSCWDFW 600
             R+ IVRD  RFH F +GSCSC D+W
Sbjct: 616 YKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 144/330 (43%), Gaps = 50/330 (15%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC------------- 81
           T  + L++CAR      GK  H  I+  G + D    + L+  Y  C             
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKN 183

Query: 82  ----------------------------------GLISGARKVFDEMPQRCIVSWNTIIG 107
                                             G I  A+ +FDEMP R +VSWN +I 
Sbjct: 184 VVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMIS 243

Query: 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167
            Y  NG   EA+ LF  M      P +  T+ SVL A A    +   K +H++A K  ++
Sbjct: 244 GYAQNGHFIEAINLFQEMQSSNIDP-NYVTLVSVLPAIARIGALELGKWIHLYAGKNKVE 302

Query: 168 RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227
            +  +G+AL+D+Y+KCG I  A +VFE++P+RN +TWS+++  F  +   E+A+I F   
Sbjct: 303 IDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLM 362

Query: 228 QVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK-TGFGSNMFAASSLVDMYAKCGC 286
              G+  N      ++ AC+    + +G+   + + K  G    +     +VD+  + G 
Sbjct: 363 GKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGH 422

Query: 287 VVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
           + +A  +   +  E + V+W  ++     H
Sbjct: 423 LEEAEELIRNMPIEPDDVIWKALLGACKMH 452


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 322/575 (56%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+      +G+  HA I   G   D    N L+  Y++C  +  A K+F  +
Sbjct: 223 TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRL 282

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSW+ +I ++       EA+  +  M  EG  P + +T +SVL ACA+  D+   
Sbjct: 283 PRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRP-NYYTFASVLLACASVGDLRAG 341

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H   L       +  GTAL+D+Y   G + +A  +F+ +  R+E  W+ ++ G+ + 
Sbjct: 342 RAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQ 401

Query: 215 ELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
                 L L+R  +    +   +   S VI ACA L A    +Q H+ +   G  S+   
Sbjct: 402 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 461

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           A+SLV+MY++ G +  A  VF  +  ++ + W T+I+G+++H      + L+++M+  G 
Sbjct: 462 ATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGA 521

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+E T++ VL ACSH G+ E+GK  F  +   + + PN+ HYSC+ID+L RAG + +A 
Sbjct: 522 EPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAE 581

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           +LI  MP +     W SLL + R +++++ A  AA Q+  ++P +  +++LLSN++A   
Sbjct: 582 ELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTG 641

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
               +A  R  +    VKK +  SW+E+         G  +HPR  EI+++L++L  ++K
Sbjct: 642 NLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIK 701

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY PE+E  LHDV +  K+ LL  HSEKLA+ FGL+   PG  +RI   LRIC DCHS
Sbjct: 702 EAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHS 761

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF S IA RE IVRD +RFH F +G CSC D+W
Sbjct: 762 AVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 214/403 (53%), Gaps = 13/403 (3%)

Query: 40  LQSCARERAPVRGKVCHAKIIGM-GLNNDTLTSNILINFYSKCGLISGARKVFDEMP-QR 97
           L +CA   A   GK  H++I G  GL  D +  N L+  Y+KCG +  A+++F+ M  +R
Sbjct: 128 LGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRR 187

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            + SWN +I +Y  +G  +EA+ L+ +M  E     S  T +SVL AC+    + + +++
Sbjct: 188 SVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEP----SVRTFTSVLSACSNLGLLDQGRKI 243

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H        + ++ +  ALL +YA+C  + DA+++F+ +P R+ V+WS+M+A F + +L+
Sbjct: 244 HALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLF 303

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           +EA+  + + Q+ G+  N +T +SV+ ACA +  L  G+ VH  +   G+   +   ++L
Sbjct: 304 DEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTAL 363

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           VD+Y   G + +A  +F  IE ++  LW  +I G+S+      V+ L+ +M+     P  
Sbjct: 364 VDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPAT 423

Query: 338 Q-TYISVLSACSHIG-MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           +  Y  V+SAC+ +G   +  +++ D  ++   ++ +    + ++++  R G +  A  +
Sbjct: 424 KIIYSCVISACASLGAFADARQAHSD--IEADGMISDFVLATSLVNMYSRWGNLESARQV 481

Query: 396 ILNMPFDATASMWGSLLASCRNY--RNLELAEIAAKQLFGMEP 436
              M    T + W +L+A    +    L L      +L G EP
Sbjct: 482 FDKMSSRDTLA-WTTLIAGYAKHGEHGLALGLYKEMELEGAEP 523



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 187/343 (54%), Gaps = 13/343 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H +I G    N     N ++  Y KCG ++ AR  FD + ++   SW +++ +Y  NG  
Sbjct: 47  HDRISGAASAN-VFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHY 105

Query: 116 QEAVALFINM-LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV-FALKAAMDRNVFVG 173
           + A+ L+  M L+     Y     ++VL ACA+   + E K +H   +    +  +V + 
Sbjct: 106 RAALDLYKRMDLQPNPVVY-----TTVLGACASIEALEEGKAIHSRISGTKGLKLDVILE 160

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEV-TWSSMVAGFVQNELYEEALILFRRAQVLGL 232
            +LL +YAKCG + DA R+FE M  R  V +W++M+A + Q+  +EEA+ L+   + + +
Sbjct: 161 NSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLY---EDMDV 217

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
           E +  T +SV+ AC+ L  L QG+++HA++   G   ++   ++L+ MYA+C C+ DA  
Sbjct: 218 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAK 277

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           +F  +  ++VV W+ MI+ F+      E +  + KMQ  G+ PN  T+ SVL AC+ +G 
Sbjct: 278 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 337

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           +  G++  D ++     +  + + + ++D+    G + EA  L
Sbjct: 338 LRAGRAVHDQILGNGYKI-TLVNGTALVDLYTSYGSLDEARSL 379



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 160/293 (54%), Gaps = 13/293 (4%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           +D+   +Q+H   +  A   NVF+G  ++  Y KCG ++ A   F+++  +N+ +W SM+
Sbjct: 38  QDLESVRQIHD-RISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSML 96

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GF 267
             + QN  Y  AL L++R   + L+ N    ++V+ ACA + AL +GK +H+ +  T G 
Sbjct: 97  TAYAQNGHYRAALDLYKR---MDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGL 153

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFE 326
             ++   +SL+ MYAKCG + DA  +F  +   ++V  WN MI+ +++     E + L+E
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYE 213

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            M    + P+ +T+ SVLSACS++G++++G+    L+  +   L ++   + ++ +  R 
Sbjct: 214 DMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQNALLTMYARC 269

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA-EIAAK-QLFGMEPD 437
             + +A  +   +P     S W +++A+       + A E  +K QL G+ P+
Sbjct: 270 KCLDDAAKIFQRLPRRDVVS-WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 321


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/558 (38%), Positives = 324/558 (58%), Gaps = 14/558 (2%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H  ++  G  NDT T+N LIN Y +    + A ++F+EM +  ++S+ +++  +   GR 
Sbjct: 50  HTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRP 109

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
           + A+ +F  ML     P + FT ++V+ AC+   D+   +++H       +  N+ V ++
Sbjct: 110 KSALLIFCKMLESWVLP-NAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSS 168

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY- 234
           L+D+Y KC  + DA RVF+ M  RN V+W+SM+  + QN L E AL LFR    L L   
Sbjct: 169 LIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSP 228

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N F ++SVI ACA L  L+ GK  HA + + G  SN   AS+LVDMYAKCGC+  +  VF
Sbjct: 229 NHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVF 288

Query: 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354
             I + +V+ + +MI G +++      + +F++M    + PN+ T++ VL ACSH G+V+
Sbjct: 289 RRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVD 348

Query: 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI--LNMPFDATASMWGSLL 412
            G  Y   M K+H V+P+  HY+C++D+LGR G + EA+ L   + +  D  A +WG+LL
Sbjct: 349 DGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLL 408

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
           ++ R Y  +++A  A+K L       A  ++ +SN YA   +WE V   R  ++   V K
Sbjct: 409 SASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMKHYGVYK 468

Query: 473 EKSKSWVEIKGKRNH---------PRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DVED 522
           E   SWVEI+               R +E+ S L +L   MK+ GY   +   +  DVE+
Sbjct: 469 EPGCSWVEIRDSAYVFYAGDVSLCARGSEVASLLRELERRMKERGYVGGSRGLVSIDVEE 528

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K+E++  HSE+LAL FGL+ +  GV IR+MKNLR+C DCH   K  S I  R+ +VRD
Sbjct: 529 EAKEEIVGLHSERLALAFGLISIPKGVTIRVMKNLRMCRDCHEAFKLISEIVERDFVVRD 588

Query: 583 LNRFHHFTNGSCSCWDFW 600
           +NRFHHF NGSC+C DFW
Sbjct: 589 VNRFHHFENGSCTCRDFW 606



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 152/305 (49%), Gaps = 10/305 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    + +C+       G+  H+ +   G+  + +  + LI+ Y KC  +  AR+VFD M
Sbjct: 130 TFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGM 189

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +VSW ++I +Y  N   + A+ LF        +  + F ++SV+ ACA+   +   
Sbjct: 190 DYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSG 249

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K  H   ++   + N  V +AL+D+YAKCG I  + +VF  +P+ + + ++SM+ G  + 
Sbjct: 250 KVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKY 309

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLCKTGFGSNMFA 273
            L + +L +F+      ++ N  T   V+ AC+    +  G + +H++  K G   +   
Sbjct: 310 GLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKH 369

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMI-----LF 325
            + +VDM  + G + +A+ +   I+   ++  +LW T++S    + R V++ +     L 
Sbjct: 370 YTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGR-VDIAVEASKWLI 428

Query: 326 EKMQQ 330
           E  QQ
Sbjct: 429 ESNQQ 433



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 111/230 (48%), Gaps = 9/230 (3%)

Query: 36  LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95
           L + + +CA     V GKV HA +I  G  ++ + ++ L++ Y+KCG I  + KVF  +P
Sbjct: 233 LASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIP 292

Query: 96  QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-C 154
              ++ + ++I      G  + ++ +F  ML     P ++ T   VL AC+    V +  
Sbjct: 293 DPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKP-NDVTFVGVLHACSHSGLVDDGL 351

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM---PERNEVTWSSMVAGF 211
           + LH    K  +  +    T ++D+  + G + +A ++ +S+   P++  + W ++++  
Sbjct: 352 EYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSA- 410

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261
             + LY    I    ++ L +E NQ   ++ +      A   + + VH++
Sbjct: 411 --SRLYGRVDIAVEASKWL-IESNQQVAAAYVTMSNTYAMAGKWENVHSI 457


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/669 (34%), Positives = 364/669 (54%), Gaps = 87/669 (13%)

Query: 14  KSFSSSA---IASASANANATELSTLQATL-QSCARERAPVRGKVCHAKIIGMGLNNDTL 69
           KSF+ +A    A+A   A+ +E   L ++L Q C   ++        +  +  G ++   
Sbjct: 55  KSFTCAAKSFFATAHNGASFSESLQLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSL- 113

Query: 70  TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG 129
             N LI+ Y KCG +  ARKVFDE+P R IV+WN++I SY  NGR +EA+ ++  M+ +G
Sbjct: 114 -GNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 172

Query: 130 KTPYSEFTVSSVLCACAAKRDVFECKQLH------------VFALKAAMD---------- 167
             P  EFT SSV  A +    V E ++ H            VF   A +D          
Sbjct: 173 ILP-DEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRD 231

Query: 168 ----------RNVFVGTALLDVYAKCGLISDASRVFESMP----ERNE------------ 201
                     ++V + TAL+  Y+  G   ++ +VF +M     E NE            
Sbjct: 232 ARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGN 291

Query: 202 ----------------------VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
                                 VTW+S++ G VQN   E AL+ FR+     +  N FT+
Sbjct: 292 LEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTL 351

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           SSV+ AC+ LA L QGKQ+HA++ K G   + +  ++L+D Y KCG    A  VF+G+ E
Sbjct: 352 SSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLE 411

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
            +VV  N+MI  ++++    E + LF  M+  GL PN  T++ VLSAC++ G++E+G   
Sbjct: 412 VDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHI 471

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
           F       N+     HY+CM+D+LGRAG + EA ++++N    +   +W +LL++CR + 
Sbjct: 472 FSSARNSGNIELTKDHYACMVDLLGRAGRLKEA-EMLINQVNISDVVIWRTLLSACRIHG 530

Query: 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWV 479
           ++E+A+    ++  + P++ G H+LLSN+YA+   W +V   +  +R+  +KK  + SWV
Sbjct: 531 DVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWV 590

Query: 480 EIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH 531
           +++        G  +HP   +I  KLE+L+E++K+LGY P+T   L D+++ +K   L +
Sbjct: 591 DVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYY 650

Query: 532 HSEKLALTFGLM-CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           HSEKLA+ F L         IRI+KNLR+CGDCH++MKF S+I GR+ I RD+ RFHHF 
Sbjct: 651 HSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFR 710

Query: 591 NGSCSCWDF 599
           NG CSC D+
Sbjct: 711 NGLCSCGDY 719


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/546 (37%), Positives = 311/546 (56%), Gaps = 40/546 (7%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIV----------- 100
           G   H +++ +G        + L++ Y+K GLI  AR+VF EM  + +V           
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 101 --------------------SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS 140
                               +W T++   T NG + EA+ +F  M  EG     ++T  S
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG-VGIDQYTFGS 283

Query: 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
           +L AC A   + E KQ+H +  +   + NVFVG+AL+D+Y+KC  I  A  VF  M  RN
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            ++W++M+ G+ QN   EEA+  F   Q+ G++ + FT+ SVI +CA LA+L +G Q H 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
           +   +G    +  +++LV +Y KCG + DA+ +F  +   + V W  +++G+++  ++ E
Sbjct: 404 LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKE 463

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFEKM   GL P+  T+I VLSACS  G+VEKG  YFD M K H ++P   HY+CMI
Sbjct: 464 TIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI 523

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+  R+G   EA + I  MP    A  W +LL+SCR   N+E+ + AA+ L   +P N  
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAE 492
           +++LL +++AA  +W EVA  R+ +RD +VKKE   SW++ K K        ++HP  + 
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSR 643

Query: 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
           IY KLE L  +M + GYKP+    LHDV D+ K  ++ HHSEKLA+ FGL+ +   +PIR
Sbjct: 644 IYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIR 703

Query: 553 IMKNLR 558
           I+KNLR
Sbjct: 704 IVKNLR 709



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 211/407 (51%), Gaps = 35/407 (8%)

Query: 65  NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFIN 124
           + +  T N L++  +   L+    ++F  MP+R  VS+N +I  +++ G    +V L+  
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           +LRE     +  T+S+++   +A  D      +H   L+       FVG+ L+D+YAK G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 185 LISDASRVFESMP-------------------------------ERNEVTWSSMVAGFVQ 213
           LI DA RVF+ M                                +R+ +TW++MV G  Q
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           N L  EAL +FRR +  G+  +Q+T  S++ AC  LAAL +GKQ+HA + +T +  N+F 
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            S+LVDMY+KC  +  A  VF  +  +N++ W  MI G+ ++A S E +  F +MQ  G+
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P++ T  SV+S+C+++  +E+G + F  +     ++  +   + ++ + G+ G I +A+
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 394 DLILNMPFDATASMWGSLLASCRNY-RNLELAEIAAKQLF-GMEPDN 438
            L   M F    S W +L+     + +  E  ++  K L  G++PD 
Sbjct: 435 RLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLANGLKPDG 480



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 146/323 (45%), Gaps = 34/323 (10%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C    A   GK  HA I      ++    + L++ YSKC  I  A  VF  M
Sbjct: 280 TFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRM 339

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R I+SW  +I  Y  N   +EAV  F  M  +G  P  +FT+ SV+ +CA    + E 
Sbjct: 340 TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP-DDFTLGSVISSCANLASLEEG 398

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q H  AL + + R + V  AL+ +Y KCG I DA R+F+ M   ++V+W+++V G+ Q 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              +E + LF +    GL+ +  T   V+ AC+    + +G       C   +  +M   
Sbjct: 459 GKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKG-------CD--YFDSMQKD 509

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
             +V +     C++D Y                     SR  R  E     ++M  +   
Sbjct: 510 HGIVPIDDHYTCMIDLY---------------------SRSGRFKEAEEFIKQMPHS--- 545

Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
           P+   + ++LS+C   G +E GK
Sbjct: 546 PDAFGWATLLSSCRLRGNMEIGK 568



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 71/336 (21%)

Query: 170 VFVGTALLDVYAKCGLISDASRVFES-------------------------------MPE 198
            F+   LL  YAK G ++ A RVF+                                MPE
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 199 RNEVTWSSMVAGFVQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQ 257
           R+ V++++++ GF        ++ L+R   +   +   + T+S++I   + L+    G  
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL------------- 304
           VH  + + GFG+  F  S LVDMYAK G + DA  VF  +E K VV+             
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 305 ------------------WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346
                             W TM++G +++   +E + +F +M+  G+  ++ T+ S+L+A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP----FD 402
           C  +  +E+GK     + +      NVF  S ++D+  +   I  A  +   M       
Sbjct: 288 CGALAALEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438
            TA + G    +C        +E+   Q+ G++PD+
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEM---QMDGIKPDD 379


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 320/576 (55%), Gaps = 11/576 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C        GK     I       D      LI  Y++C     A +VF  M
Sbjct: 113 TFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRM 172

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            Q+ +++W+ II ++  +G   EA+  F  M +EG  P +  T  S+L        + E 
Sbjct: 173 KQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILP-NRVTFISLLNGFTTPSGLEEL 231

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKC--GLISDASRVFESMPERNEVTWSSMVAGFV 212
            ++H+   +  +D    +  AL++VY +C  G +  A  + + M E+    W+ ++ G+ 
Sbjct: 232 SRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYT 291

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
            +    EAL  ++R Q+  +  ++ T  SV+ AC    +L +GK +H+   + G  S++ 
Sbjct: 292 LHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVI 351

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
             ++L +MY+KCG + +A  +F  +  ++ V WN M+  +++H  S EV+ L  KM+Q G
Sbjct: 352 VKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG 411

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  N  T++SVLS+CSH G++ +G  YF  +     +     HY C++D+LGRAG + EA
Sbjct: 412 VKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEA 471

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
              I  MP +     W SLL +CR +++L+  ++AA++L  ++P N+   ++LSNIY+  
Sbjct: 472 EKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSER 531

Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
             W+  A+ R+ +    VKK    S +++K K         +HPR AEIY K+E+L   M
Sbjct: 532 GDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAM 591

Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
           ++ GY P+T+  LHDV++ +K+ LL +HSEKLA+ FGL+       + I KNLR+C DCH
Sbjct: 592 REAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCH 651

Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +  KF S+I GRE +VRD +RFHHF +GSCSC D+W
Sbjct: 652 TATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 206/397 (51%), Gaps = 4/397 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L S     A  +GK  H+ +     + D   +  L+N Y+KCG ++ ARKVFD M
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 71

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R + +WN++I +Y+ + R  EA  +F  M  EG+      T  S+L AC    ++   
Sbjct: 72  PCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGER-CDRVTFLSILDACVNPENLQHG 130

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +     + + + ++FVGTAL+ +YA+C    +A++VF  M ++N +TWS+++  F  +
Sbjct: 131 KHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADH 190

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
               EAL  FR  Q  G+  N+ T  S++      + L +  ++H ++ + G       +
Sbjct: 191 GHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMS 250

Query: 275 SSLVDMYAKC--GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           ++LV++Y +C  G +  A  +   ++E+ +  WN +I+G++ H RS E +  ++++Q   
Sbjct: 251 NALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEA 310

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           +  ++ T+ISVL+AC+    + +GK      V +  +  +V   + + ++  + G +  A
Sbjct: 311 IPVDKVTFISVLNACTSSTSLAEGKMIHSNAV-ECGLDSDVIVKNALTNMYSKCGSMENA 369

Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAK 429
             +  +MP  +  S  G L A  ++  + E+ ++  K
Sbjct: 370 RRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRK 406



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 74/127 (58%)

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G++ N  T  +V+ +     AL +GK +H+ + ++    ++F  ++LV+ Y KCG + DA
Sbjct: 5   GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDA 64

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF G+  ++V  WN+MIS +S   RS E   +F++MQ  G   +  T++S+L AC + 
Sbjct: 65  RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNP 124

Query: 351 GMVEKGK 357
             ++ GK
Sbjct: 125 ENLQHGK 131


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 322/575 (56%), Gaps = 10/575 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L +C+      +G+  HA I   G   D    N L+  Y++C  +  A K+F  +
Sbjct: 222 TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRL 281

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSW+ +I ++       EA+  +  M  EG  P + +T +SVL ACA+  D+   
Sbjct: 282 PRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRP-NYYTFASVLLACASVGDLRAG 340

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H   L       +  GTAL+D+Y   G + +A  +F+ +  R+E  W+ ++ G+ + 
Sbjct: 341 RAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQ 400

Query: 215 ELYEEALILFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
                 L L+R  +    +   +   S VI ACA L A    +Q H+ +   G  S+   
Sbjct: 401 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 460

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
           A+SLV+MY++ G +  A  VF  +  ++ + W T+I+G+++H      + L+++M+  G 
Sbjct: 461 ATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGA 520

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+E T++ VL ACSH G+ E+GK  F  +   + + PN+ HYSC+ID+L RAG + +A 
Sbjct: 521 EPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAE 580

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           +LI  MP +     W SLL + R +++++ A  AA Q+  ++P +  +++LLSN++A   
Sbjct: 581 ELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTG 640

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
               +A  R  +    VKK +  SW+E+         G  +HPR  EI+++L++L  ++K
Sbjct: 641 NLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIK 700

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
           + GY PE+E  LHDV +  K+ LL  HSEKLA+ FGL+   PG  +RI   LRIC DCHS
Sbjct: 701 EAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHS 760

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +KF S IA RE IVRD +RFH F +G CSC D+W
Sbjct: 761 AVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 214/402 (53%), Gaps = 12/402 (2%)

Query: 40  LQSCARERAPVRGKVCHAKIIGM-GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
           L +CA  +A   GK  H++I G  GL  D +  N L+  Y+KCG +  A+++F+ M  R 
Sbjct: 128 LGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRS 187

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           + SWN +I +Y  +G  +EA+ L+ +M  E     S  T +SVL AC+    + + +++H
Sbjct: 188 VSSWNAMIAAYAQSGHFEEAIRLYEDMDVEP----SVRTFTSVLSACSNLGLLDQGRKIH 243

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
                   + ++ +  ALL +YA+C  + DA+++F+ +P R+ V+WS+M+A F + +L++
Sbjct: 244 ALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFD 303

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           EA+  + + Q+ G+  N +T +SV+ ACA +  L  G+ VH  +   G+   +   ++LV
Sbjct: 304 EAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALV 363

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
           D+Y   G + +A  +F  IE ++  LW  +I G+S+      V+ L+ +M+     P  +
Sbjct: 364 DLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATK 423

Query: 339 -TYISVLSACSHIG-MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
             Y  V+SAC+ +G   +  +++ D  ++   ++ +    + ++++  R G +  A  + 
Sbjct: 424 IIYSCVISACASLGAFADARQAHSD--IEADGMISDFVLATSLVNMYSRWGNLESARQVF 481

Query: 397 LNMPFDATASMWGSLLASCRNY--RNLELAEIAAKQLFGMEP 436
             M    T + W +L+A    +    L L      +L G EP
Sbjct: 482 DKMSSRDTLA-WTTLIAGYAKHGEHGLALGLYKEMELEGAEP 522



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 188/342 (54%), Gaps = 12/342 (3%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           H +I G    N     N ++  Y KCG ++ AR  FD + ++   SW +++ +Y  NG  
Sbjct: 47  HDRISGAASAN-VFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHY 105

Query: 116 QEAVALFINM-LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV-FALKAAMDRNVFVG 173
           + A+ L+  M L+     Y     ++VL ACA+ + + E K +H   +    +  +V + 
Sbjct: 106 RAALDLYKRMDLQPNPVVY-----TTVLGACASIKALEEGKAIHSRISGTKGLKLDVILE 160

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            +LL +YAKCG + DA R+FE M  R+  +W++M+A + Q+  +EEA+ L+   + + +E
Sbjct: 161 NSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLY---EDMDVE 217

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            +  T +SV+ AC+ L  L QG+++HA++   G   ++   ++L+ MYA+C C+ DA  +
Sbjct: 218 PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKI 277

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +  ++VV W+ MI+ F+      E +  + KMQ  G+ PN  T+ SVL AC+ +G +
Sbjct: 278 FQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDL 337

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
             G++  D ++     +  + + + ++D+    G + EA  L
Sbjct: 338 RAGRAVHDQILGNGYKI-TLVNGTALVDLYTSYGSLDEARSL 378



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 160/292 (54%), Gaps = 12/292 (4%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
           +D+   +Q+H   +  A   NVF+G  ++  Y KCG ++ A   F+++  +N+ +W SM+
Sbjct: 38  QDLESVRQIHD-RISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSML 96

Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GF 267
             + QN  Y  AL L++R   + L+ N    ++V+ ACA + AL +GK +H+ +  T G 
Sbjct: 97  TAYAQNGHYRAALDLYKR---MDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGL 153

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             ++   +SL+ MYAKCG + DA  +F  +  ++V  WN MI+ +++     E + L+E 
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYED 213

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M    + P+ +T+ SVLSACS++G++++G+    L+  +   L ++   + ++ +  R  
Sbjct: 214 MD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQNALLTMYARCK 269

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA-EIAAK-QLFGMEPD 437
            + +A  +   +P     S W +++A+       + A E  +K QL G+ P+
Sbjct: 270 CLDDAAKIFQRLPRRDVVS-WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 320


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 298/518 (57%), Gaps = 15/518 (2%)

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           +P     S NT++  + ++ R + A+AL     R    P    T   +L ACA    +  
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALH----RRHLAPPDTHTYPPLLQACARLLALRY 140

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGF 211
            + LH  A K  +   VFV  +L+ +Y  CGL   A RVF+ +P  ERN V+W+S++ GF
Sbjct: 141 GEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGF 200

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
             N    E L +FR    +    + FT+ SV+ ACA +  L  G++VH  + K G   N 
Sbjct: 201 AANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNA 260

Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            A ++L+D+YAKCG V DA  +F  +   + VV W ++I G + +   ++ + LF  M++
Sbjct: 261 HAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMER 320

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
             L P E T + VL ACSH G+V+ G  YFD M  ++ + P + H  CM+D+LGRAG + 
Sbjct: 321 EKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVE 380

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA++ I  MP +  A +W +LL +C  ++ LE+ E A  +L  ++P ++G+++LLSN+YA
Sbjct: 381 EAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYA 440

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
              RW +V   RK +    V+K    S VE++        G R+HP   +IY  L  + E
Sbjct: 441 GVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAE 500

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            +++ GY P T + L D+ED  K+  L +HSE+LA+ F L+   PG PIRI+KNLR+CGD
Sbjct: 501 RLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGD 560

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH  +K  S++  RE IVRD +RFHHF  G+CSC D+W
Sbjct: 561 CHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 146/288 (50%), Gaps = 6/288 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    LQ+CAR  A   G+  HA+    GL +     N L++ Y  CGL   A +VFDE+
Sbjct: 124 TYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEI 183

Query: 95  --PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
             P+R +VSWN+++  +  NGR  E + +F  ML     P   FTV SVL ACA    + 
Sbjct: 184 PPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAP-DGFTVVSVLTACAEIGVLA 242

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVAGF 211
             +++HVF  K  +  N   G AL+D+YAKCG + DA ++F  M   R  V+W+S++ G 
Sbjct: 243 LGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGL 302

Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSN 270
             N    +AL LF   +   L   + T+  V+ AC+    +  G +    +  + G    
Sbjct: 303 AVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPR 362

Query: 271 MFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHAR 317
           +     +VD+  + G V +A+ ++ +   E N V+W T++   + H +
Sbjct: 363 IEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKK 410


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/556 (35%), Positives = 329/556 (59%), Gaps = 8/556 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           +V HA++I      D    + L++ Y   G    A+K+FDEMP +  +SWN+++  ++  
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G     + +F  M  E    ++E T+ SV+ ACA  +   E   LH  A+K  M+  V V
Sbjct: 131 GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKV 190

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
             A +++Y K G +  A ++F ++PE+N V+W+SM+A + QN +  EA+  F   +V GL
Sbjct: 191 VNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGL 250

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
             ++ TI S++ AC  L      + +H V+   G   N+  A++L+++Y+K G +  ++ 
Sbjct: 251 FPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHK 310

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF+ I + + V    M++G++ H    E +  F+   + G+ P+  T+  +LSACSH G+
Sbjct: 311 VFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGL 370

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           V  GK YF +M   + V P + HYSCM+D+LGR G++++AY LI +MP +  + +WG+LL
Sbjct: 371 VMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALL 430

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
            +CR YRN+ L + AA+ L  + P +  N+++LSNIY+A   W + ++ R L++     +
Sbjct: 431 GACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIR 490

Query: 473 EKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
               S++E   K         +HP   +I+ KLE+++ ++K++G+  ETE  LHDV++  
Sbjct: 491 NAGCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEV 550

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
           K +++  HSEK+AL FGL+     +P+ I+KNLRIC DCH+  KF S I  R  I+RD  
Sbjct: 551 KTDMINKHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSK 610

Query: 585 RFHHFTNGSCSCWDFW 600
           RFHHF++G CSC D+W
Sbjct: 611 RFHHFSDGLCSCADYW 626


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/614 (35%), Positives = 337/614 (54%), Gaps = 28/614 (4%)

Query: 14  KSFSSSAIASASANANATELSTLQATLQSC------ARERAPVRGKV------------C 55
           K+ +SSA    +   N  +L T Q   Q         +  +PV   +             
Sbjct: 51  KTTTSSAPLDRNPTMNKIKLQTQQLAFQHPVTRNFDTQSHSPVHEALLRSGPRLRNLQQV 110

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115
           HA II  GL+        LI+     G I+ AR++F  +P      +++++   +  G  
Sbjct: 111 HAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFS 170

Query: 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175
            + V  +  ML  G  P S +T +SV+ ACA    +   K++H   +      +++V  A
Sbjct: 171 IDTVLFYRRMLFSG-APQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 229

Query: 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235
           L+ +YAK   +  A +VF++MP+R  + W+S+++G+ QN L +E++ LF      G + +
Sbjct: 230 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPD 289

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
             TI S++ +C+ L AL  G  +H      GF  N+   +SL++MY +CG V  A  VF 
Sbjct: 290 SATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 349

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355
            ++E+NVV W  MISG+  H    + M LF +M+  G  PN  T+++VLSAC+H G+++ 
Sbjct: 350 SMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDD 409

Query: 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN-MPFDATASMWGSLLAS 414
           G+  F  M + + ++P V H  CM+D+ GRAGL+++AY  I   +P +   ++W S+L +
Sbjct: 410 GRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 469

Query: 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEK 474
           CR +RN +L    A+ +  +EP+N G++++LSNIYA   R + V   R ++    +KK+ 
Sbjct: 470 CRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQV 529

Query: 475 SKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQ 526
             S +EI         G ++HP+   IY  L++L+    + GY P  E  +HD+E+  + 
Sbjct: 530 GYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERD 589

Query: 527 ELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRF 586
             L +HSEKLAL FGL+    G  IRI+KNLRIC DCHS +K  S IA RE IVRD  RF
Sbjct: 590 YALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRF 649

Query: 587 HHFTNGSCSCWDFW 600
           HHF +GSCSC D+W
Sbjct: 650 HHFKDGSCSCLDYW 663



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 167/321 (52%), Gaps = 14/321 (4%)

Query: 3   SLLRYKHKFYYKS----FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAK 58
           SLL+   KF +      F    + S +  +N T  S ++A    CA   A   GK  H+ 
Sbjct: 159 SLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKA----CADLSALRLGKEIHSH 214

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           ++  G  +D      LI  Y+K   +  A+KVFD MPQR I++WN++I  Y  NG  QE+
Sbjct: 215 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 274

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALL 177
           + LF  M+  G  P S  T+ S+L +C+    + F C  LH +A     D NV +GT+L+
Sbjct: 275 IGLFHLMMESGFQPDSA-TIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLI 332

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           ++Y +CG +S A  VF+SM ERN VTW++M++G+  +    +A+ LF   +  G   N  
Sbjct: 333 NMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNI 392

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFS 295
           T  +V+ ACA    +  G++V + + +  G    +     +VDM+ + G + DAY F+  
Sbjct: 393 TFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKK 452

Query: 296 GI-EEKNVVLWNTMISGFSRH 315
            I +E    +W +M+     H
Sbjct: 453 FIPKEPGPAVWTSMLGACRMH 473


>gi|357139595|ref|XP_003571366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Brachypodium distachyon]
          Length = 674

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/546 (34%), Positives = 311/546 (56%), Gaps = 8/546 (1%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G   D    N ++  Y  CG+++ AR+VF+ MP R  V+W  ++G      + + A+ALF
Sbjct: 129 GFQPDQYMWNRVLGMYLACGMLAEAREVFEGMPARSRVTWGVMMGGLVDGRQPRGALALF 188

Query: 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
             +  E         +   + A  A   V   ++LH    K     + ++  AL+D+Y+K
Sbjct: 189 GELWGEMGVGAGPRVLVVAVRAATALGSVRAGQELHCCVAKMGACEDQYLPCALVDMYSK 248

Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
           CG + +A RVF+ MP R+ V W++M+A +  +   EEA+ L+      G+ ++QFT S++
Sbjct: 249 CGRLDEARRVFDGMPWRSVVAWNTMLAAYSLHGCAEEAVDLYHDMCECGVVFDQFTFSTM 308

Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
           +   + L  L   KQ+HA L ++G   ++   ++LVD+Y K G + DA  VF  +  +N+
Sbjct: 309 LGVFSRLGLLEHAKQIHASLIQSGLHMDIVGNTALVDLYCKWGRMEDARHVFERMPSRNL 368

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           + WN +I+G+  H      + +FE++   G+ PN  TY+ VL+AC   G ++KGK  F L
Sbjct: 369 ISWNALIAGYGYHGMGAHAIEMFERLIAEGIAPNHVTYLGVLNACRFSGFIDKGKRIFQL 428

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
           M +     P   HY+C+I++ G+ GL+ EAY +I   PF  TA+MWG+LL +CR ++N++
Sbjct: 429 MAQNPKTKPRAMHYACVIELFGQQGLLDEAYSMIRKAPFTPTANMWGALLTACRIHKNIQ 488

Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
           LA +AA+QL  MEP    N+++L N+Y ++ R +E  +    +  + +    + SW+ +K
Sbjct: 489 LARLAAEQLLAMEPQKVNNYIVLLNLYISSGRQDEALKVVNTLNGAGLCMSNACSWITVK 548

Query: 483 GKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
            K +        HP+ +EIY KL  L+E +K+LGY  E +  L D+     +    +HSE
Sbjct: 549 KKDHRFFFKDSLHPKSSEIYRKLHTLMEALKELGYVAEEDELLPDILPDELKTSKAYHSE 608

Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
           +LA+ FG++   P  P+ I ++ R+C DCH  MK  +++  RE ++RD +RFHHF  G+C
Sbjct: 609 RLAVAFGIISTSPSTPLTINQSHRLCRDCHKVMKLVAQVTKREIVLRDGSRFHHFKLGTC 668

Query: 595 SCWDFW 600
           SC D+W
Sbjct: 669 SCGDYW 674


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/560 (36%), Positives = 326/560 (58%), Gaps = 14/560 (2%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG---ARKVFDEMPQRCIVSWNTIIGSY 109
           K   A  I    NN T+ +  LINF +    I+    A ++FD++PQ  IV +NT+   Y
Sbjct: 52  KQIQAYTIKTHQNNPTVLTK-LINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGY 110

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
                   A+ L   +L  G  P  ++T SS+L ACA  + + E KQLH  A+K  +  N
Sbjct: 111 ARFDDPLRAILLCSQVLCSGLLP-DDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDN 169

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
           ++V   L+++Y  C  +  A RVF+ + E   V +++++    +N    EAL LFR  Q 
Sbjct: 170 MYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQE 229

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            GL+    T+   + +CA L AL  G+ +H  + K GF   +   ++L+DMYAKCG + D
Sbjct: 230 SGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDD 289

Query: 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
           A  VF  +  ++   W+ MI  ++ H    + + +  +M++A + P+E T++ +L ACSH
Sbjct: 290 AVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSH 349

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
            G+VE+G  YF  M  ++ ++P++ HY CMID+LGRAG + EA   I  +P   T  +W 
Sbjct: 350 TGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWR 409

Query: 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469
           +LL+SC ++ N+E+A++  +++F ++  + G++++LSN+ A N RW++V   RK++ D  
Sbjct: 410 TLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKG 469

Query: 470 VKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH-DV 520
             K    S +E+         G   H     ++  L++LV+E+K  GY P+T    + D+
Sbjct: 470 ALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADI 529

Query: 521 EDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIV 580
           ED  K+ +L +HSEKLA+T+GL+   PG  IR++KNLR+C DCH+  KF S I GR+ I+
Sbjct: 530 EDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIIL 589

Query: 581 RDLNRFHHFTNGSCSCWDFW 600
           RD+ RFHHF +G CSC D+W
Sbjct: 590 RDVQRFHHFKDGKCSCGDYW 609



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 149/284 (52%), Gaps = 3/284 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T  + L++CAR +A   GK  H   + +G+ ++      LIN Y+ C  +  AR+VFD++
Sbjct: 137 TFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKI 196

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            + C+V++N II S   N R  EA+ALF  +   G  P ++ T+   L +CA    +   
Sbjct: 197 GEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKP-TDVTMLVALSSCALLGALDLG 255

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           + +H +  K   D+ V V TAL+D+YAKCG + DA  VF+ MP R+   WS+M+  +  +
Sbjct: 256 RWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATH 315

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLCKTGFGSNMFA 273
               +A+ + R  +   ++ ++ T   ++ AC+    + +G +  H++  + G   ++  
Sbjct: 316 GHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKH 375

Query: 274 ASSLVDMYAKCGCVVDA-YFVFSGIEEKNVVLWNTMISGFSRHA 316
              ++D+  + G + +A  F+     +   +LW T++S  S H 
Sbjct: 376 YGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHG 419


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/581 (34%), Positives = 328/581 (56%), Gaps = 28/581 (4%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ++    L+SCA       G+  H +I+ MG   D +    L++FY+K G +  A++VF  
Sbjct: 11  TSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMG 70

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-----AK 148
           MP+R +V+ N +I + + +G  +EA  LF NM       ++    S + C C      + 
Sbjct: 71  MPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWN----SMITCYCKLGDINSA 126

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM-PERNEVTWSSM 207
           R +F+C  +          ++V    A++D Y K   +  A  +F  M   RN VTW++M
Sbjct: 127 RLMFDCNPV----------KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTM 176

Query: 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267
           ++ +VQ   +  A+ +F++ Q   ++  + T+ S++ ACA L AL  G+ +H  +     
Sbjct: 177 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL 236

Query: 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327
             ++   ++L+DMY KCG +  A  VF G+  KN+  WN++I G   + R  E +  F  
Sbjct: 237 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 296

Query: 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387
           M++ G+ P+  T++ +LS CSH G++  G+ YF  M+  + + P V HY CM+D+LGRAG
Sbjct: 297 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 356

Query: 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
            + EA +LI  MP    + + GSLL +C+ +++ +L E   +QL  ++P + GN++ LSN
Sbjct: 357 YLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSN 416

Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEK 499
           +YA+  RW++V   RKL+    V K    S +E+         G  +HP+  +I + L++
Sbjct: 417 LYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDE 476

Query: 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRI 559
           + +E+K  G+ P T + LHD+E+  K+  + +HSE++A+ FGLM   PG  IR++KNLR 
Sbjct: 477 IAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRT 536

Query: 560 CGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           C DCHS MK  S    RE IVRD  RFHHF NGSCSC D+W
Sbjct: 537 CSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184
           MLR    P S+ + S +L +CA   +    +  H   +K   + ++ + T LLD YAK G
Sbjct: 1   MLRNDVLP-SKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVG 59

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244
            +  A RVF  MP R+ V  ++M++   ++   EEA  LF        E N  + +S+I 
Sbjct: 60  DLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT----ERNSCSWNSMIT 115

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA--YFVFSGIEEKNV 302
               L  +   +    ++       ++ + ++++D Y K   +V A   F+  G   +N 
Sbjct: 116 CYCKLGDINSAR----LMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMG-SARNS 170

Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
           V WNTMIS + +       + +F++MQ   + P E T +S+LSAC+H+G ++ G+ +   
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE-WIHG 229

Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
            ++   +  +V   + +ID+  + G +  A D+
Sbjct: 230 YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDV 262



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 17/192 (8%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           S N   TE+ T+ + L +CA   A   G+  H  I    L  D +  N LI+ Y KCG +
Sbjct: 198 SENVKPTEV-TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGAL 256

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             A  VF  + ++ I  WN+II     NGR +EA+A FI M +EG  P    T   +L  
Sbjct: 257 EAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKP-DGVTFVGILSG 315

Query: 145 C------AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198
           C      +A +  F  + L V+ L+  ++        ++D+  + G + +A  +  +MP 
Sbjct: 316 CSHSGLLSAGQRYFS-EMLGVYGLEPGVEHY----GCMVDLLGRAGYLKEALELIRAMPM 370

Query: 199 RNEVTWSSMVAG 210
           +     +SMV G
Sbjct: 371 KP----NSMVLG 378


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/586 (36%), Positives = 323/586 (55%), Gaps = 20/586 (3%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           +  + E++     L +C R R    G+  HA+I+  G  +    +N ++  Y KCG +  
Sbjct: 27  DQGSREVTEYLDLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMED 86

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
             + F EM +R IVSWN +I +Y  N R  +A+ +F+ ML +G  P S  T +SVL A A
Sbjct: 87  LSRAFSEMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQP-SYVTFTSVLNAFA 145

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
                   K +H  AL+     +  V TALL++Y+K G I  A +VF+ +  ++ V+WS+
Sbjct: 146 GPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSN 205

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+A + Q     EAL +F R    G++ N  T  +V+ AC  +A +   + +H  + + G
Sbjct: 206 MIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAG 265

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             SN    ++L++MY KCG + +A  +F  + E++VV+W+ ++  ++RH      + LF 
Sbjct: 266 LESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFT 325

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            MQQ G+ PN+ T++ VL AC H G V +G+ +F  +V+ H + P   H  CM+D+LGRA
Sbjct: 326 LMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRA 385

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G + EA   I  MP    A  W   L SCR+Y +LE  + AA+++F   P     +L L+
Sbjct: 386 GKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLA 445

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLE 498
           ++Y      EE     +L+     KKE   S + ++G+ +        HP+  EIYS L+
Sbjct: 446 SMYTDAGMPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLD 505

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG---VPIRIMK 555
            L     +LGY P+T   L     S +++L   HSE+LAL FG M + PG    PI I+K
Sbjct: 506 VLHARALELGYVPDTRPLL---LGSVERKL---HSERLALAFGAMSV-PGKRNSPIHIIK 558

Query: 556 NLRICGDCHSFMKFASR-IAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+C DCH F KF SR + GRE IVRD +RFH F +G CSC D+W
Sbjct: 559 NLRVCRDCHEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 151/287 (52%), Gaps = 4/287 (1%)

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           L +G    +E+    +L AC   R++   ++LH   +       +F+   +L +Y KCG 
Sbjct: 26  LDQGSREVTEYL--DLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGG 83

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           + D SR F  M  RN V+W+++++ + QN+   +A+++F R  + G++ +  T +SV+ A
Sbjct: 84  MEDLSRAFSEMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNA 143

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
            AG       K VH +  + GFGS+   A++L++MY+K G +  A  VF  +  K+VV W
Sbjct: 144 FAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSW 203

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           + MI+ +++     E + +F +M   G+  N  T+++V+ AC  +  +   ++    +++
Sbjct: 204 SNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIE 263

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
              +  N    + ++++ G+ G + EA   I +   +    +W ++L
Sbjct: 264 A-GLESNTVLGTALLNMYGKCGGLPEAKK-IFDKLTERDVVVWSAIL 308


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/601 (36%), Positives = 324/601 (53%), Gaps = 28/601 (4%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           +A+  A    TL A+L++C        G   H   +  G     + ++ L+  YSK G I
Sbjct: 98  TASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRI 157

Query: 85  SGARKVFDEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLR-EGKTPYSEFTVSSVL 142
             AR+VFD       I +WN ++  Y   G  ++A+ +F  M R EG+    EFT +S+L
Sbjct: 158 GDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLL 217

Query: 143 CACAAKRDVFECKQLHVFALKAAMD--RNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
            AC+      E  Q+H     +      N  +  AL+D+Y KC  +  A +VFE +  +N
Sbjct: 218 KACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKN 277

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            + W+++V G  Q     EAL LFRR    G   +   +SSV+   A  A + QG+QVH 
Sbjct: 278 VIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHC 337

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
              K   G+++ A +S+VDMY KCG   +A  +F  +   NVV W TM++G  +H    E
Sbjct: 338 YGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGRE 397

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFE+M+  G+ P+E TY+++LSACSH G+V++ + YF  + +   V P   HY+CM+
Sbjct: 398 AVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMV 457

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+LGRAG + EA DLI  MP + T  +W +LL++CR ++++ +   A   L  M+ DN  
Sbjct: 458 DLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPV 517

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK------------RNHP 488
           N++ LSN+ A    W E  + R  +R   +KK+   SWVE+ GK              HP
Sbjct: 518 NYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEV-GKEVHFFYGGGGEEETHP 576

Query: 489 RIAEIYSKLEKLVEEMK-KLGYKP-ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           +  +I   L  +   M+ +LGY   +    LHDV++  + E L  HSE+LA+  GL  L 
Sbjct: 577 QAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSERLAV--GLWLLR 634

Query: 547 PGV-------PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
            GV       PIR+ KNLR+CGDCH F K  S +  R  +VRD NRFH F +GSCSC D+
Sbjct: 635 NGVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDY 694

Query: 600 W 600
           W
Sbjct: 695 W 695



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
           ++ +L A A    +    QLH    K     +  +G  L+D+Y KCG +  A  VF  M 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGK 256
           +RN V+W++++ GF+++      L L    +       N++T+S+ + AC  +     G 
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            +H +  + G+  +   ASSLV +Y+K G + DA  VF G      +  WN M+SG++  
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 316 ARSVEVMILFEKMQQ-AGLH-PNEQTYISVLSACSHIGMVEKG 356
               + +++F +M++  G H P+E T+ S+L ACS +G   +G
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREG 229



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295
           Q  I+ ++ A A  ++L  G Q+H  + K GFGS+    ++L+DMY KCG +  A  VF 
Sbjct: 4   QKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFG 63

Query: 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVE 354
           G+ ++NVV W  ++ GF RH  +   + L  +M+ A    PNE T  + L AC  +G   
Sbjct: 64  GMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTA 123

Query: 355 KGKSYFDLMVK----QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
            G     L V+    +H+V+      S ++ +  + G I +A  +       +  + W +
Sbjct: 124 AGVGIHGLCVRAGYQEHDVVA-----SSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNA 178

Query: 411 LLAS 414
           +++ 
Sbjct: 179 MVSG 182


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/618 (33%), Positives = 354/618 (57%), Gaps = 21/618 (3%)

Query: 1   MKSLLRYKHKFYYKSFSSSAIASASANANATE-------LSTLQATLQSCARERAPVRGK 53
           +K+ +  KH+    ++  S ++  S   NA         LSTL   L+S +        +
Sbjct: 9   LKTCMLLKHQLKPLTYCCSFLSQTSLQFNAISTHHFDPFLSTLILHLKSSSSVSI---CR 65

Query: 54  VCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113
           + HA +I      D    + L++ Y K G    A  +FDEMP++  VSWN+++      G
Sbjct: 66  IIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIG 125

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
           +  E +++F  M  + +   +EFT  SV+ AC +++   E   +H  A+K  +   V V 
Sbjct: 126 QLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVV 185

Query: 174 TALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
            AL+++Y K G +  A R+F  MPE  ++ V+W+S+VA   QN +  EA   F   +V G
Sbjct: 186 NALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNG 245

Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
              +  T+ S++ AC         + +H V+   G   N+   ++L+++Y+K G + ++ 
Sbjct: 246 FFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSR 305

Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHI 350
            VF  I + + V W  M++G++ H    E +  FE++ ++ G+ P+  T+  +LSACSH 
Sbjct: 306 KVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHS 365

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G+V++GK +F +M   + V P + HYSCM+D+LGR GL+ +A++LI NMPF+  + +WG+
Sbjct: 366 GLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGA 425

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL +CR +RN++L + AAK L  ++P +  N+++LSN+Y+A   W + ++ R L+++  +
Sbjct: 426 LLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVL 485

Query: 471 KKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
            + +  S++E        +     HP    I+ KLE+++++++ +G+  ETE  LHDV++
Sbjct: 486 TRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVDE 545

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K +++  HSEK+AL +GL+     +P+ I+KNLRIC DCH+ +KF S +  R  I+RD
Sbjct: 546 EVKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIRD 605

Query: 583 LNRFHHFTNGSCSCWDFW 600
             RFH F+ G CSC D+W
Sbjct: 606 TKRFHQFSGGLCSCGDYW 623


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/605 (35%), Positives = 339/605 (56%), Gaps = 60/605 (9%)

Query: 56  HAKIIGMGLNNDTLTSNILINFYSKCGL----ISGARKVFDEMPQRCIVSWNTIIGSYTT 111
           HA  I  G   DTL +  ++ F +   L    +  A K+F++MPQR   SWNTII  ++ 
Sbjct: 36  HAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSE 95

Query: 112 NGREQE--AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           +  ++   A+ LF  M+ +     + FT  SVL ACA    + + KQ+H  ALK     +
Sbjct: 96  SDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGD 155

Query: 170 VFVGTALLDVYAKCGLISDA---------------------------------------- 189
            FV + L+ +Y  CGL+ DA                                        
Sbjct: 156 EFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLG 215

Query: 190 -----SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV-LGLEYNQFTISSVI 243
                  +F+ M +R+ V+W++M++G+ QN  +++A+ +FR  +    +  N  T+ SV+
Sbjct: 216 DCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVL 275

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303
            A + L +L  G+ +H     +G   +    S+L+DMY+KCG +  A  VF  +  +NV+
Sbjct: 276 PAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVI 335

Query: 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
            W+ MI+GF+ H ++ + +  F KM+QAG+ P++  YI++L+ACSH G+VE+G+ YF  M
Sbjct: 336 TWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQM 395

Query: 364 VKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLEL 423
           V    + P + HY CM+D+LGR GL+ EA + ILNMP      +W +LL +CR +RN+E+
Sbjct: 396 VSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEM 455

Query: 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG 483
            +  A  L  M P ++G ++ LSN+YA+   W EV+  R  +++ +++K+   SW++I G
Sbjct: 456 GKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDG 515

Query: 484 --------KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEK 535
                     +HPR  EI S L ++ ++++  GY+P T   L ++E+  K+  L +HSEK
Sbjct: 516 VLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEK 575

Query: 536 LALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595
           +A  FGL+   PG PIRI+KNLRIC DCHS +K  S++  R+  VRD  RFHHF +GSCS
Sbjct: 576 MATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCS 635

Query: 596 CWDFW 600
           C D+W
Sbjct: 636 CMDYW 640



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 154/335 (45%), Gaps = 55/335 (16%)

Query: 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL----I 186
           +P      SS+       R + +  Q+H   +K+   R+      +L   A   L    +
Sbjct: 9   SPGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDL 68

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY---NQFTISSVI 243
             A ++F  MP+RN  +W++++ GF +++  +  + +    +++  E+   N+FT  SV+
Sbjct: 69  DYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVL 128

Query: 244 CACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG-----CV----------- 287
            ACA    + QGKQ+H +  K GFG + F  S+LV MY  CG     CV           
Sbjct: 129 KACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREM 188

Query: 288 -------------------VDAY----------FVFSGIEEKNVVLWNTMISGFSRHARS 318
                              +D Y           +F  + +++VV WNTMISG+S++   
Sbjct: 189 VMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFF 248

Query: 319 VEVMILFEKMQQA-GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377
            + + +F +M++   + PN  T +SVL A S +G +E G+ +  L  +   +  +    S
Sbjct: 249 KDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGE-WLHLYAEDSGIRIDDVLGS 307

Query: 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
            +ID+  + G+I +A  +   +P +   + W +++
Sbjct: 308 ALIDMYSKCGIIEKAIMVFERLPRENVIT-WSAMI 341



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 149/343 (43%), Gaps = 66/343 (19%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI---------- 84
           T  + L++CA+     +GK  H   +  G   D    + L+  Y  CGL+          
Sbjct: 123 TFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKN 182

Query: 85  -----------------------------------SGARKVFDEMPQRCIVSWNTIIGSY 109
                                                AR +FD+M QR +VSWNT+I  Y
Sbjct: 183 IIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 242

Query: 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN 169
           + NG  ++AV +F  M +      +  T+ SVL A +    +   + LH++A  + +  +
Sbjct: 243 SQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRID 302

Query: 170 VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229
             +G+AL+D+Y+KCG+I  A  VFE +P  N +TWS+M+ GF  +    +A+  F + + 
Sbjct: 303 DVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQ 362

Query: 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289
            G+  +     +++ AC+    + +G++         + S M +   L       GC+VD
Sbjct: 363 AGVRPSDVAYINLLTACSHAGLVEEGRR---------YFSQMVSVDGLEPRIEHYGCMVD 413

Query: 290 AY-----------FVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
                        F+ +   + + V+W  ++ G  R  R+VE+
Sbjct: 414 LLGRLGLLDEAEEFILNMPIKPDDVIWKALL-GACRMHRNVEM 455


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/573 (36%), Positives = 327/573 (57%), Gaps = 13/573 (2%)

Query: 37  QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
           +A L+S  R R     +  HA II  GL+        LI+     G I+ AR++F  +P 
Sbjct: 31  EALLRSGPRLR---NLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPN 87

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
                +++++   +  G   + V  +  ML  G  P S +T +SV+ ACA    +   K+
Sbjct: 88  PDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSG-APQSNYTFTSVIKACADLSALRLGKE 146

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H   +      +++V  AL+ +YAK   +  A +VF++MP+R  + W+S+++G+ QN L
Sbjct: 147 IHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGL 206

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
            +E++ LF      G + +  TI S++ +C+ L AL  G  +H      GF  N+   +S
Sbjct: 207 PQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS 266

Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
           L++MY +CG V  A  VF  ++E+NVV W  MISG+  H    + M LF +M+  G  PN
Sbjct: 267 LINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPN 326

Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396
             T+++VLSAC+H G+++ G+  F  M + + ++P V H  CM+D+ GRAGL+++AY  I
Sbjct: 327 NITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFI 386

Query: 397 LN-MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
              +P +   ++W S+L +CR +RN +L    A+ +  +EP+N G++++LSNIYA   R 
Sbjct: 387 KKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRM 446

Query: 456 EEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKL 507
           + V   R ++    +KK+   S +EI         G ++HP+   IY  L++L+    + 
Sbjct: 447 DRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSES 506

Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
           GY P  E  +HD+E+  +   L +HSEKLAL FGL+    G  IRI+KNLRIC DCHS +
Sbjct: 507 GYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAI 566

Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           K  S IA RE IVRD  RFHHF +GSCSC D+W
Sbjct: 567 KHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 167/321 (52%), Gaps = 14/321 (4%)

Query: 3   SLLRYKHKFYYKS----FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAK 58
           SLL+   KF +      F    + S +  +N T  S ++A    CA   A   GK  H+ 
Sbjct: 95  SLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKA----CADLSALRLGKEIHSH 150

Query: 59  IIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118
           ++  G  +D      LI  Y+K   +  A+KVFD MPQR I++WN++I  Y  NG  QE+
Sbjct: 151 VMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQES 210

Query: 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALL 177
           + LF  M+  G  P S  T+ S+L +C+    + F C  LH +A     D NV +GT+L+
Sbjct: 211 IGLFHLMMESGFQPDSA-TIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLI 268

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           ++Y +CG +S A  VF+SM ERN VTW++M++G+  +    +A+ LF   +  G   N  
Sbjct: 269 NMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNI 328

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY-FVFS 295
           T  +V+ ACA    +  G++V + + +  G    +     +VDM+ + G + DAY F+  
Sbjct: 329 TFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKK 388

Query: 296 GI-EEKNVVLWNTMISGFSRH 315
            I +E    +W +M+     H
Sbjct: 389 FIPKEPGPAVWTSMLGACRMH 409


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/601 (36%), Positives = 324/601 (53%), Gaps = 28/601 (4%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           +A+  A    TL A+L++C        G   H   +  G     + ++ L+  YSK G I
Sbjct: 51  TASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRI 110

Query: 85  SGARKVFDEMP-QRCIVSWNTIIGSYTTNGREQEAVALFINMLR-EGKTPYSEFTVSSVL 142
             AR+VFD       I +WN ++  Y   G  ++A+ +F  M R EG+    EFT +S+L
Sbjct: 111 GDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLL 170

Query: 143 CACAAKRDVFECKQLHVFALKAAMD--RNVFVGTALLDVYAKCGLISDASRVFESMPERN 200
            AC+      E  Q+H     +      N  +  AL+D+Y KC  +  A +VFE +  +N
Sbjct: 171 KACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKN 230

Query: 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260
            + W+++V G  Q     EAL LFRR    G   +   +SSV+   A  A + QG+QVH 
Sbjct: 231 VIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHC 290

Query: 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320
              K   G+++ A +S+VDMY KCG   +A  +F  +   NVV W TM++G  +H    E
Sbjct: 291 YGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGRE 350

Query: 321 VMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380
            + LFE+M+  G+ P+E TY+++LSACSH G+V++ + YF  + +   V P   HY+CM+
Sbjct: 351 AVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMV 410

Query: 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
           D+LGRAG + EA DLI  MP + T  +W +LL++CR ++++ +   A   L  M+ DN  
Sbjct: 411 DLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPV 470

Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK------------RNHP 488
           N++ LSN+ A    W E  + R  +R   +KK+   SWVE+ GK              HP
Sbjct: 471 NYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEV-GKEVHFFYGGGGEEETHP 529

Query: 489 RIAEIYSKLEKLVEEMK-KLGYKP-ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           +  +I   L  +   M+ +LGY   +    LHDV++  + E L  HSE+LA+  GL  L 
Sbjct: 530 QAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSERLAV--GLWLLR 587

Query: 547 PGV-------PIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
            GV       PIR+ KNLR+CGDCH F K  S +  R  +VRD NRFH F +GSCSC D+
Sbjct: 588 NGVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDY 647

Query: 600 W 600
           W
Sbjct: 648 W 648



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 4/182 (2%)

Query: 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQF 237
           +Y KCG +  A  VF  M +RN V+W++++ GF+++      L L    +       N++
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T+S+ + AC  +     G  +H +  + G+  +   ASSLV +Y+K G + DA  VF G 
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 298 E-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-AGLH-PNEQTYISVLSACSHIGMVE 354
                +  WN M+SG++      + +++F +M++  G H P+E T+ S+L ACS +G   
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 355 KG 356
           +G
Sbjct: 181 EG 182



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ 338
           MY KCG +  A  VF G+ ++NVV W  ++ GF RH  +   + L  +M+ A    PNE 
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVK----QHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
           T  + L AC  +G    G     L V+    +H+V+      S ++ +  + G I +A  
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVA-----SSLVLVYSKGGRIGDARR 115

Query: 395 LILNMPFDATASMWGSLLAS 414
           +       +  + W ++++ 
Sbjct: 116 VFDGAGLGSGIATWNAMVSG 135


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/542 (37%), Positives = 316/542 (58%), Gaps = 10/542 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           DT   N +++ Y + G +  A K+F +MP + ++SW T+I     N R  EA+ LF NML
Sbjct: 158 DTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNML 217

Query: 127 REG-KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           R   K+    FT   V+ ACA         Q+H   +K       +V  +L+  YA C  
Sbjct: 218 RCCIKSTSRPFTC--VITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKR 275

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           I D+ +VF+         W+++++G+  N+ +E+AL +F       +  NQ T +S + +
Sbjct: 276 IGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNS 335

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           C+ L  L  GK++H V  K G  ++ F  +SLV MY+  G V DA  VF  I +K++V W
Sbjct: 336 CSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSW 395

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
           N++I G ++H R     ++F +M +    P+E T+  +LSACSH G +EKG+  F  M  
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSS 455

Query: 366 QHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELA 424
             N +   + HY+CM+DILGR G + EA +LI  M       +W +LL++CR + +++  
Sbjct: 456 GINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRG 515

Query: 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK 484
           E AA  +F ++  ++  ++LLSNIYA+  RW  V++ R  ++ + + K+   SWV I+GK
Sbjct: 516 EKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGK 575

Query: 485 R------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
           +      + P  + IY KLE L E++K+LGY P+    LHDVED +K+E+L +HSE+LA+
Sbjct: 576 KHEFFSGDQPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAI 635

Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
            FGL+    G  + +MKNLR+C DCH+ +K  S + GRE ++RD  RFHHF NG+CSC D
Sbjct: 636 AFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGD 695

Query: 599 FW 600
           +W
Sbjct: 696 YW 697



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 183/375 (48%), Gaps = 13/375 (3%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           +I  Y++   +  A  +FDEMP R +VSWN++I      G    AV LF  M       +
Sbjct: 72  MITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSW 131

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
                ++++  C     V + ++L  F      D   +   +++  Y + G + DA ++F
Sbjct: 132 -----TAMVNGCFRSGKVDQAERL--FYQMPVKDTAAW--NSMVHGYLQFGKVDDALKLF 182

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + MP +N ++W++M+ G  QNE   EAL LF+      ++      + VI ACA   A  
Sbjct: 183 KQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFH 242

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G QVH ++ K GF    + ++SL+  YA C  + D+  VF     + V +W  ++SG+S
Sbjct: 243 MGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYS 302

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            + +  + + +F  M +  + PN+ T+ S L++CS +G ++ GK    + VK   +  + 
Sbjct: 303 LNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKL-GLETDA 361

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
           F  + ++ +   +G +++A  + + + F  +   W S++  C  +   + A +   Q+  
Sbjct: 362 FVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIR 420

Query: 434 M--EPDNAGNHLLLS 446
           +  EPD      LLS
Sbjct: 421 LNKEPDEITFTGLLS 435



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 156/321 (48%), Gaps = 37/321 (11%)

Query: 39  TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC 98
            + +CA   A   G   H  II +G   +   S  LI FY+ C  I  +RKVFDE     
Sbjct: 231 VITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQ 290

Query: 99  IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
           +  W  ++  Y+ N + ++A+++F  MLR    P ++ T +S L +C+A   +   K++H
Sbjct: 291 VAVWTALLSGYSLNKKHEDALSIFSGMLRNSILP-NQSTFASGLNSCSALGTLDWGKEMH 349

Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
             A+K  ++ + FVG +L+ +Y+  G ++DA  VF  + +++ V+W+S++ G  Q+   +
Sbjct: 350 GVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGK 409

Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
            A ++F +   L  E ++ T + ++ AC+    L +G+++                    
Sbjct: 410 WAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLF------------------- 450

Query: 279 DMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336
                       Y++ SGI   ++ +  +  M+    R  +  E   L E+M    + PN
Sbjct: 451 ------------YYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMV---VKPN 495

Query: 337 EQTYISVLSACSHIGMVEKGK 357
           E  ++++LSAC     V++G+
Sbjct: 496 EMVWLALLSACRMHSDVDRGE 516



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + L SC+       GK  H   + +GL  D    N L+  YS  G ++ A  VF +
Sbjct: 327 STFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIK 386

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ IVSWN+II     +GR + A  +F  M+R  K P  E T + +L AC+    + +
Sbjct: 387 IFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEP-DEITFTGLLSACSHCGFLEK 445

Query: 154 CKQLHVFALKAA--MDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
            ++L  +       +DR +   T ++D+  +CG + +A  + E M  + NE+ W ++++ 
Sbjct: 446 GRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSA 505


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 313/527 (59%), Gaps = 10/527 (1%)

Query: 84  ISGARKVFDEMPQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
           +S A KVF ++ +   +  WNT+I  Y   G    A +L+  M   G       T   ++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            A     DV   + +H   +++     ++V  +LL +YA CG ++ A +VF+ MPE++ V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
            W+S++ GF +N   EEAL L+      G++ + FTI S++ ACA + AL  GK+VH  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
            K G   N+ +++ L+D+YA+CG V +A  +F  + +KN V W ++I G + +    E +
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 323 ILFEKMQQA-GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
            LF+ M+   GL P E T++ +L ACSH GMV++G  YF  M +++ + P + H+ CM+D
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
           +L RAG + +AY+ I +MP      +W +LL +C  + + +LAE A  Q+  +EP+++G+
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGD 428

Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEI 493
           ++LLSN+YA+ +RW +V + RK +    VKK    S VE+         G ++HP+   I
Sbjct: 429 YVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAI 488

Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
           Y+KL+++   ++  GY P+  +   DVE+  K+  +++HSEK+A+ F L+      PI +
Sbjct: 489 YAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITV 548

Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +KNLR+C DCH  +K  S++  RE +VRD +RFHHF NGSCSC D+W
Sbjct: 549 VKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 48  APVR-GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106
           A VR G+  H+ +I  G  +     N L++ Y+ CG ++ A KVFD+MP++ +V+WN++I
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVI 194

Query: 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM 166
             +  NG+ +EA+AL+  M  +G  P   FT+ S+L ACA    +   K++HV+ +K  +
Sbjct: 195 NGFAENGKPEEALALYTEMNSKGIKP-DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRR 226
            RN+     LLD+YA+CG + +A  +F+ M ++N V+W+S++ G   N   +EA+ LF+ 
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 313

Query: 227 AQ-VLGLEYNQFTISSVICACAGLAALIQG-KQVHAVLCKTGFGSNMFAASSLVDMYAKC 284
            +   GL   + T   ++ AC+    + +G +    +  +      +     +VD+ A+ 
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373

Query: 285 GCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           G V  AY ++ S   + NVV+W T++   + H  S   +  F ++Q   L PN      +
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS--DLAEFARIQILQLEPNHSGDYVL 431

Query: 344 LS 345
           LS
Sbjct: 432 LS 433



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+ + L +CA+  A   GK  H  +I +GL  +  +SN+L++ Y++CG +  A+ +FDEM
Sbjct: 224 TIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINM-LREGKTPYSEFTVSSVLCACA---AKRD 150
             +  VSW ++I     NG  +EA+ LF  M   EG  P  E T   +L AC+     ++
Sbjct: 284 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP-CEITFVGILYACSHCGMVKE 342

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTWSSMVA 209
            FE         +  ++  +     ++D+ A+ G +  A    +SMP + N V W +++ 
Sbjct: 343 GFE--YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 400

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQ 236
               +   +  L  F R Q+L LE N 
Sbjct: 401 ACTVHG--DSDLAEFARIQILQLEPNH 425


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 323/557 (57%), Gaps = 10/557 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  H +I+      D      L+  Y++ G +S A KVF+EMP+  +V W+ +I  +  N
Sbjct: 267 KSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G   +AV +FI M REG    +EFT+SS+L  CA  +     +QLH   +K   D +V+V
Sbjct: 327 GFCNKAVDIFIRM-REGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYV 385

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
             AL+DVYAKC  +  A ++F  +  +N V+W++++ G+       +AL +FR A    +
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQV 445

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
              + T SS + ACA LA++  G QVH +  KT     +  ++SL+DMYAKCG +  A  
Sbjct: 446 SVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQT 505

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF+ +E  +V  WN +ISG+S H    + + +F+ M+ +   PN  T++ VLS CS+ G+
Sbjct: 506 VFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGL 565

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +++G+  F+ M+  H + P + HY+CM+ + GR+G + +A +LI  +P++ +  +W ++L
Sbjct: 566 IDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAML 625

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
           ++  N  N E A  +A+++  + P +   ++LLSN+YA  ++W  VA  RK +++  VKK
Sbjct: 626 SASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKK 685

Query: 473 EKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           E   SW+E +G          +HP +  I   LE L  +  + GY P+    L D++D  
Sbjct: 686 EPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEE 745

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVP-IRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
           K + L  HSE+LAL +GL+ +      I IMKNLRIC DCHS MK  S I  R+ ++RD+
Sbjct: 746 KDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDM 805

Query: 584 NRFHHFTNGSCSCWDFW 600
           NRFHHF  G CSC D W
Sbjct: 806 NRFHHFHAGVCSCDDHW 822



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 173/345 (50%), Gaps = 17/345 (4%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L+ C R+   V  K  H  I+  G   D   +NIL+N Y K G    A  +FDEMP+R  
Sbjct: 56  LRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNN 115

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGK--TPYSEFTVSSVLCACAAKRDVFECKQL 157
           VS+ T+   Y      Q+ V L+  + REG    P+  FT    L     K ++  C  L
Sbjct: 116 VSYVTLTQGYAC----QDPVGLYSRLHREGHELNPHV-FTSFLKLFVSLDKAEI--CWWL 168

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H   +K   D N FVG AL++ Y+ CG +  A  VFE +  ++ V W+ +V+ +V+N  +
Sbjct: 169 HSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCF 228

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           E++L L  R  + G   N +T  + + A  GL A    K VH  + KT +  +      L
Sbjct: 229 EDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGL 288

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + +Y + G + DA+ VF+ + + +VV W+ MI+ F ++    + + +F +M++  + PNE
Sbjct: 289 LQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNE 348

Query: 338 QTYISVLSA-----CSHIGMVEKG---KSYFDLMVKQHNVLPNVF 374
            T  S+L+      CS +G    G   K  FDL V   N L +V+
Sbjct: 349 FTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVY 393



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 142/278 (51%), Gaps = 3/278 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L  CA  +    G+  H  ++ +G + D   SN LI+ Y+KC  +  A K+F E+
Sbjct: 350 TLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAEL 409

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             + +VSWNT+I  Y   G   +A+ +F   LR  +   +E T SS L ACA+   +   
Sbjct: 410 SSKNVVSWNTVIVGYENLGEGGKALNMFREALRN-QVSVTEVTFSSALGACASLASMELG 468

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H  A+K    + V V  +L+D+YAKCG I  A  VF  M   +  +W+++++G+  +
Sbjct: 469 VQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTH 528

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLCKTGFGSNMFA 273
            L  +AL +F   +    + N  T   V+  C+    + QG+    +++C  G    +  
Sbjct: 529 GLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEH 588

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMIS 310
            + +V ++ + G +  A  +  GI  E +V++W  M+S
Sbjct: 589 YTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLS 626



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 9/280 (3%)

Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
           ++L  C  K D    K +H   LK     ++F    LL+ Y K G   DA  +F+ MPER
Sbjct: 54  TMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPER 113

Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
           N V++ ++  G+      ++ + L+ R    G E N    +S +     L        +H
Sbjct: 114 NNVSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLH 169

Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
           + + K G+ SN F  ++L++ Y+ CG V  A  VF GI  K++V+W  ++S +  +    
Sbjct: 170 SPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFE 229

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFHYSC 378
           + + L  +M   G  PN  T+ + L A   +G     KS    ++K  + + P V     
Sbjct: 230 DSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRV--GVG 287

Query: 379 MIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRN 417
           ++ +  + G + +A+ +   MP +     W  ++A  C+N
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVP-WSFMIARFCQN 326


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/610 (33%), Positives = 343/610 (56%), Gaps = 45/610 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL   L +CAR  A ++G+  HA  I +GL N+   SN +I FY++CG ++    +F+ M
Sbjct: 307 TLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERM 366

Query: 95  PQRCIVSWNTIIGSYT-------------------------------TNGREQEAVALFI 123
           P R I++W  +I +Y                                 N    +A+ LF+
Sbjct: 367 PVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFV 426

Query: 124 NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            M++EG    ++FT++ V+ AC     +   +Q+H F +K     N  +  AL+D+ +KC
Sbjct: 427 RMVQEG-AELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKC 485

Query: 184 GLISDASRVFESMPER--NEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTIS 240
           G + DA R+F+S+     N +  +SM+ G+ +N L EEA+ LF R Q  G +  ++   +
Sbjct: 486 GRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFT 545

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           S++  C  L     GKQ+H    KTGF + +   +S++ MY+KC  + DA   F+ +   
Sbjct: 546 SILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGH 605

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA--CSHIGMVEKGKS 358
           +VV WN +I+G   H +  E + ++  M++AG+ P+  T++ ++SA   +   ++++ +S
Sbjct: 606 DVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRS 665

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
            F  M   H++ P   HY+ ++ +LG  GL+ EA +LI  MPFD   S+W +LL  CR +
Sbjct: 666 LFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELINKMPFDPEVSVWRALLDGCRLH 725

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
            N  + +  AK + GMEP +   ++L+SN+YAA+ RW      R+ +RD  ++K   +SW
Sbjct: 726 ANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASGRWHCSEMVRENMRDRGLRKHPCRSW 785

Query: 479 VEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           V IK +        ++HP+  +IYS L+ L+ +  K GY+P+    L +VE+ +K++ L 
Sbjct: 786 VIIKKQLHTFYARDKSHPQSNDIYSGLDILILKCLKAGYEPDMSFVLQEVEEQQKKDFLF 845

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
           +HS KLA T+GL+   PG PIR++KN+ +C DCH+F+K+A+ +  RE I RD + FH F+
Sbjct: 846 YHSAKLAATYGLLKTRPGEPIRVVKNILLCRDCHTFLKYATVVTQREIIFRDASGFHCFS 905

Query: 591 NGSCSCWDFW 600
           NG CSC  +W
Sbjct: 906 NGQCSCKGYW 915



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 144/520 (27%), Positives = 234/520 (45%), Gaps = 61/520 (11%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L +C R      G   HA  I +G +     +N LI  Y KCG +  A  +FDEMPQR
Sbjct: 208 AILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQR 267

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            I SWNT+I S       ++A+ LF  + +       +FT+S++L ACA      + +++
Sbjct: 268 DIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREI 327

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV--------- 208
           H +A++  ++ N+ V  A++  Y +CG ++  + +FE MP R+ +TW+ M+         
Sbjct: 328 HAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLV 387

Query: 209 ----------------------AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
                                  GF +N    +AL LF R    G E   FT++ VI AC
Sbjct: 388 DLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINAC 447

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI--EEKNVVL 304
             L  L   +Q+H  + K GF SN    ++L+DM +KCG + DA  +F  +  +  N ++
Sbjct: 448 GLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSII 507

Query: 305 WNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363
             +MI G++R+    E + LF + Q  G +  +E  + S+L  C  +G  E GK      
Sbjct: 508 QTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQI---- 563

Query: 364 VKQHNVLPNVFHY-----SCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
                 L   FH      + +I +  +   I +A      MP     S W  L+A    +
Sbjct: 564 --HCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVS-WNGLIAGQLLH 620

Query: 419 RNLE--LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR----ARKLIRDSEVKK 472
           R  +  LA  ++ +  G++PD     L++S     +    +  R    + K+I D E   
Sbjct: 621 RQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTS 680

Query: 473 EKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512
           E   S V + G          +  LE+  E + K+ + PE
Sbjct: 681 EHYASLVGVLG---------YWGLLEEAEELINKMPFDPE 711



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 197/388 (50%), Gaps = 36/388 (9%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
            +  HA I+ +G   DT   N +I  Y K GL+  A +VF  M    +VS++ +I S++ 
Sbjct: 123 ARALHASILKLG--EDTHLGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSK 180

Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
             RE EA+ LF  M   G  P +E++  ++L AC    ++    Q+H  A+K    + VF
Sbjct: 181 LNRETEAIQLFFRMRISGIEP-NEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVF 239

Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR-RAQVL 230
           V  AL+ +Y KCG +  A  +F+ MP+R+  +W++M++  V+   YE+AL LFR   Q  
Sbjct: 240 VANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNK 299

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV--- 287
           G + +QFT+S+++ ACA   A IQG+++HA   + G  +N+  +++++  Y +CG +   
Sbjct: 300 GFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHV 359

Query: 288 ------------------VDAYF----------VFSGIEEKNVVLWNTMISGFSRHARSV 319
                             + AY           +F+ + EKN V +N +++GF ++   +
Sbjct: 360 AALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGL 419

Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
           + + LF +M Q G    + T   V++AC  +  +E  +     ++K      N    + +
Sbjct: 420 KALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIK-FGFRSNACIEAAL 478

Query: 380 IDILGRAGLIHEAYDLILNMPFDATASM 407
           ID+  + G + +A  +  ++  D   S+
Sbjct: 479 IDMCSKCGRMDDADRMFQSLSTDGGNSI 506



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 8/291 (2%)

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
           D+   + LH   LK   D ++  G A++  Y K GL+ DA  VF  M   + V++S++++
Sbjct: 119 DIDLARALHASILKLGEDTHL--GNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALIS 176

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            F +     EA+ LF R ++ G+E N+++  +++ AC     L  G QVHA+  K G+  
Sbjct: 177 SFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQ 236

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM- 328
            +F A++L+ +Y KCGC+  A  +F  + ++++  WNTMIS   +     + + LF  + 
Sbjct: 237 LVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLN 296

Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
           Q  G   ++ T  ++L+AC+      +G+      ++   +  N+   + +I    R G 
Sbjct: 297 QNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRI-GLENNLSVSNAIIGFYTRCGS 355

Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
           ++    L   MP     + W  ++ +   Y    L ++A      M   N+
Sbjct: 356 LNHVAALFERMPVRDIIT-WTEMITA---YMEFGLVDLAVDMFNKMPEKNS 402


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 330/558 (59%), Gaps = 14/558 (2%)

Query: 56  HAKIIGMGLNNDTLTSNI--LINF--YSKCGLISGARKVFDEMPQRCIVSWNTII-GSYT 110
           HA+++   +   +++  +  +I F   S  G I  ARK+F ++ +  I SWN++I G   
Sbjct: 8   HARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQ 67

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
           +    +E V LF  M+R G    + FT++ VL AC+    + E +Q+H   LK+    + 
Sbjct: 68  SQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSP 127

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FV TAL++ YAKC  I  AS+VF+ + +RN V WS+M++G+ +  L  EAL LFR  Q  
Sbjct: 128 FVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKA 187

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G+  ++ T+ SVI ACA   AL  GK VHA + K    +++  +++LV+MYAKCGC+  A
Sbjct: 188 GVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERA 247

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
             VF  +  K+   W++MI G + +  + + +  F +M++A + PN  T+I VLSAC+H 
Sbjct: 248 KEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 307

Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
           G+V +G+ Y+  M+ +  ++P++  Y CM+D+L RA L+ +A  L+  MP      +W +
Sbjct: 308 GLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRT 366

Query: 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470
           LL  C+  +NL+ +E+ A++L  +EP NA N++LLSN+YA+  +WE++++ RK ++   +
Sbjct: 367 LLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGI 426

Query: 471 KKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVED 522
           K     S +E+         G  +HP   E+   L  + + +  +G++P     LH+V D
Sbjct: 427 KAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVD 486

Query: 523 SRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRD 582
             K+  L  HSE+LA+ +GL+     + IRI+KNLR+CGDCH   K  S    RE IVRD
Sbjct: 487 EEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRD 546

Query: 583 LNRFHHFTNGSCSCWDFW 600
             RFH F NGSCSC DFW
Sbjct: 547 RVRFHKFVNGSCSCRDFW 564



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 161/308 (52%), Gaps = 3/308 (0%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T+   L++C+   A   G+  HA ++  G  +       L+NFY+KC  I  A KVFDE+
Sbjct: 94  TMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEI 153

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             R +V+W+T+I  Y   G   EA+ LF +M + G  P  E T+ SV+ ACAA   +   
Sbjct: 154 TDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVP-DEVTMVSVISACAASGALDTG 212

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K +H +  K  ++ ++ + TAL+++YAKCG I  A  VF++MP ++   WSSM+ G   N
Sbjct: 213 KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAIN 272

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
            L E+AL  F R +   ++ N  T   V+ ACA    + +G++  + + + G   +M   
Sbjct: 273 GLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELY 332

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
             +VD+  +   V DA  +   +    N V+W T++ G  +     +  ++ +++ +   
Sbjct: 333 GCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEP 392

Query: 334 HPNEQTYI 341
           H N + YI
Sbjct: 393 H-NAENYI 399


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 336/585 (57%), Gaps = 21/585 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL A L +C+  ++   G   HA II   L+ DT   + L + YSKCG +  A K F  +
Sbjct: 167 TLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRI 226

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
            ++ ++SW + + +   NG   + + LF+ M+ E   P +EFT++S L  C     +   
Sbjct: 227 REKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKP-NEFTLTSALSQCCEIPSLELG 285

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+    +K   + N+ V  +LL +Y K G I +A R F  M + + VTW++M+AG  Q 
Sbjct: 286 TQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQM 345

Query: 215 -ELYE----------EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
            EL +          EAL +F +    G++ + FT+SSV+  C+ + A+ QG+Q+HA   
Sbjct: 346 MELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTI 405

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           KTGF S++  ++SL+ MY KCG +  A   F  +  + ++ W +MI+GFS+H  S + + 
Sbjct: 406 KTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALH 465

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
           +FE M  AG+ PN  T++ VLSACSH GMV +  +YF++M K++ + P + HY CM+D+ 
Sbjct: 466 IFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMF 525

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
            R G + +A + I  M ++ +  +W + +A CR++ NLEL   A++QL  ++P +   ++
Sbjct: 526 VRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETYV 585

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LL N+Y +  R+++V+R RK++   +V K K  SW+ IK K        + HP  + I  
Sbjct: 586 LLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSSLICK 645

Query: 496 KLEKLVEEMKKLGYKP-ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIM 554
            LE L+ + K LGY+  E+     + E+ +     I+HSEKLA+TFGL  L    PIR++
Sbjct: 646 SLEDLLAKAKNLGYEMLESVEISDEEEEEKTSSPTIYHSEKLAITFGLENLPNSSPIRVV 705

Query: 555 KNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           K+  IC D H+F+K  S + GRE IV+D  R H F NG CSC +F
Sbjct: 706 KSTLICRDSHNFIKCVSTLTGREIIVKDSKRLHKFVNGECSCGNF 750



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 218/416 (52%), Gaps = 15/416 (3%)

Query: 9   HKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDT 68
           H+F +  F  + + +        +L  +   LQ C  +R+    ++ H  ++  G +++ 
Sbjct: 41  HRFTHLDFGEALLLNKEGTEEEEKLFYV-PLLQQCLDKRSYSGTQIVHGHVMKTGCHDNF 99

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
              + L+N Y+KCG +  AR+VF+ MP+R +V+W T++  +  N + + A+ +F  ML  
Sbjct: 100 FVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYA 159

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188
           G  P S +T+S+VL AC++ + +    Q H + +K  +D +  VG+AL  +Y+KCG + D
Sbjct: 160 GSYP-SIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLED 218

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A + F  + E+N ++W+S V+    N    + L LF       ++ N+FT++S +  C  
Sbjct: 219 ALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCE 278

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
           + +L  G QV ++  K G+ SN+   +SL+ +Y K G +V+A+  F+ +++ ++V WN M
Sbjct: 279 IPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAM 338

Query: 309 ISG-----------FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
           I+G            S   R  E + +F K+ Q+G+ P+  T  SVLS CS +  +E+G+
Sbjct: 339 IAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGE 398

Query: 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
                 +K    L +V   + +I +  + G I  A    L M    T   W S++ 
Sbjct: 399 QIHAQTIKT-GFLSDVIVSTSLISMYNKCGSIERASKAFLEMS-TRTMIAWTSMIT 452



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 163/331 (49%), Gaps = 17/331 (5%)

Query: 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179
           AL +N  +EG     +     +L  C  KR     + +H   +K     N FV + L++V
Sbjct: 51  ALLLN--KEGTEEEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNV 108

Query: 180 YAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           YAKCG + DA RVFE+MP RN V W++++ GFVQN   + A+ +F+     G   + +T+
Sbjct: 109 YAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTL 168

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299
           S+V+ AC+ L +L  G Q HA + K     +    S+L  +Y+KCG + DA   FS I E
Sbjct: 169 SAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIRE 228

Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359
           KNV+ W + +S    +   V+ + LF +M    + PNE T  S LS C  I  +E G   
Sbjct: 229 KNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQV 288

Query: 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419
             L +K      N+   + ++ +  ++G I EA+     M  D +   W +++A      
Sbjct: 289 CSLCIK-FGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMD-DVSMVTWNAMIAGHAQMM 346

Query: 420 NLELAEIAAKQ-------LF------GMEPD 437
            L    ++A Q       +F      GM+PD
Sbjct: 347 ELTKDNLSACQRGSEALKIFSKLNQSGMKPD 377



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +L TL + L  C+R  A  +G+  HA+ I  G  +D + S  LI+ Y+KCG I  A K F
Sbjct: 377 DLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAF 436

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC------ 145
            EM  R +++W ++I  ++ +G  Q+A+ +F +M   G  P +  T   VL AC      
Sbjct: 437 LEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRP-NTVTFVGVLSACSHAGMV 495

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP-ERNEVTW 204
           +   + FE  Q   + +K  MD        ++D++ + G +  A    + M  E +E  W
Sbjct: 496 SQALNYFEIMQ-KKYKIKPVMDHY----ECMVDMFVRLGRLEQALNFIKKMNYEPSEFIW 550

Query: 205 SSMVAG 210
           S+ +AG
Sbjct: 551 SNFIAG 556


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/575 (34%), Positives = 318/575 (55%), Gaps = 43/575 (7%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L+SC+  +  + G   H+ +  + L+ +   ++  I+ YS+CG    A +VFD M
Sbjct: 125 TYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGM 184

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFIN-MLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           P R +VSWN +I  +   G    A+ +F   ++ +G  P +  T++ +L A         
Sbjct: 185 PHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAG-TMAGILPAMG------- 236

Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
                     A  D   FV                  RVF++M  +  ++W++M+A +  
Sbjct: 237 ---------NAKPDDIRFV-----------------RRVFDNMQFKELISWNAMLAVYAN 270

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           NE + +A+ LF   +   +E +  T+++V+  C  L+A   GK++H ++ +     N+  
Sbjct: 271 NEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLL 330

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMYA CGC+ DA  +F  +  ++V+ W ++IS + +H    E + LFEKM   GL
Sbjct: 331 ENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGL 390

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            P+   +++VL+ACSH G++  GK YFD M  +++++P   HY+CM+D+LGRAG I+EAY
Sbjct: 391 EPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAY 450

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           D I  M  +    +WG+LL +CR + N+++  +AA  LF + P+  G ++LLSN+YA   
Sbjct: 451 DFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAG 510

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
           RW +V   R ++ +  +KK    S VE+         G R HP+   IY KL++L+ +++
Sbjct: 511 RWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIR 570

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            +GY PE E  LHDVE+  K++ L  HSEKLA+ F L+   PG  IR+  NLR C DCH 
Sbjct: 571 GMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHL 630

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             K  S I  RE +++D NR HH   G CSC D+W
Sbjct: 631 AAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 176/373 (47%), Gaps = 42/373 (11%)

Query: 74  LINFYSKCGLISGARKVF-----DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           LI  Y+ C  +  A  V      D   +   V +N +I + T +   ++A+ LF +M   
Sbjct: 56  LIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPR 115

Query: 129 GKTPYSE-FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187
           G   + + +T    L +C+A +D+    Q+H    K  +DRNV+V  + + +Y++CG   
Sbjct: 116 GPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPE 175

Query: 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
           DA RVF+ MP R+ V+W++M+AGF +  L++ A+ +F+          QF +        
Sbjct: 176 DAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFK----------QFVV-------- 217

Query: 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307
                +QG    A     G  + +  A       AK   +     VF  ++ K ++ WN 
Sbjct: 218 -----LQGSMPDA-----GTMAGILPAMG----NAKPDDIRFVRRVFDNMQFKELISWNA 263

Query: 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367
           M++ ++ +   V+ + LF  M++  + P+  T  +VL  C  +     GK   ++ +K+ 
Sbjct: 264 MLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEI-IKRK 322

Query: 368 NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL-ASCRNYRNLELAEI 426
           N+ PN+   + ++D+    G + +A ++   M      S W S++ A  ++    E  ++
Sbjct: 323 NMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVIS-WTSIISAYGKHGHGREAVDL 381

Query: 427 AAKQLF-GMEPDN 438
             K L  G+EPD+
Sbjct: 382 FEKMLGQGLEPDS 394


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/615 (34%), Positives = 338/615 (54%), Gaps = 58/615 (9%)

Query: 30  ATELSTLQ---ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           AT+LS  Q      Q  A     +   +   K IG+  ++  L  ++LI  +        
Sbjct: 32  ATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNH-------- 83

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY-SEFTVSSVLCAC 145
               F   P   I ++N ++ +++ +      ++ F N L     P   E+T +SVL AC
Sbjct: 84  ----FLSFPN--IFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKAC 137

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG--------------------- 184
           A    V E +++H F  K   + N+FV  +L+D+Y K G                     
Sbjct: 138 AGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWN 197

Query: 185 ----------LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ-VLGLE 233
                     ++  A  VF+ M E+N V+WS+M++G+ +NE Y +A+ LFR+ Q   GL 
Sbjct: 198 TLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLA 257

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            N  T+ SV+ ACA L AL  GK +H  + +      +F  ++L DMYAKCGCV++A  V
Sbjct: 258 PNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGV 317

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  + E++V+ W+ +I G + +  + E    F +M + GL PN+ +++ +L+AC+H G+V
Sbjct: 318 FHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLV 377

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +KG  YFD+M + + + P + HY C++D+L RAG + +A  LI +MP      +WG+LL 
Sbjct: 378 DKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLG 437

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
            CR Y++ E  E    ++  ++ +++G+ + L+N+YA+  R ++ A  R  +RD++  K 
Sbjct: 438 GCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKT 497

Query: 474 KSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
              SW+EI         G  +HP+   IYS + +L  +MK  GYKP+T+  +H++++  K
Sbjct: 498 PGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEK 557

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           ++ L  HSEKLAL FGL+    G  IRI+KNLR+C DCH  +K  S+I  RE +VRD +R
Sbjct: 558 EDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSR 617

Query: 586 FHHFTNGSCSCWDFW 600
           FHHF +G CSC D+W
Sbjct: 618 FHHFKDGKCSCNDYW 632



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 149/337 (44%), Gaps = 33/337 (9%)

Query: 8   KHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
           +H  ++ + S         NA   +  T  + L++CA     + G+  H  +   G  ++
Sbjct: 102 QHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESN 161

Query: 68  TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG-------------- 113
               N L++ Y K G    A+K+FDEM  R +VSWNT+I  Y  +G              
Sbjct: 162 LFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMME 221

Query: 114 -----------------REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
                            +  +A+ LF  M  EG    ++ T+ SVL ACA    +   K 
Sbjct: 222 KNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKW 281

Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
           +H F  +  ++  +F+G AL D+YAKCG + +A  VF  M ER+ ++WS ++ G      
Sbjct: 282 IHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGY 341

Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAAS 275
             EA   F      GLE N  +   ++ AC     + +G +   ++ +  G    +    
Sbjct: 342 ANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYG 401

Query: 276 SLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISG 311
            +VD+ ++ G +  A  + + +  + NV++W  ++ G
Sbjct: 402 CVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 438



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 149/300 (49%), Gaps = 44/300 (14%)

Query: 133 YSEFTVSSVLCACAAK---RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189
           Y+      +L  CA +   R +FE +   + +   ++D N+ +    + V +  G +  +
Sbjct: 19  YNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNI-IAVKFIGVSSSHGNLRHS 77

Query: 190 SRVFE---SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN--QFTISSVIC 244
             +F    S P  N   +++++  F Q+  +   +  F    VL    N  ++T +SV+ 
Sbjct: 78  VLIFNHFLSFP--NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLK 135

Query: 245 ACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL 304
           ACAGLA +++G++VH  + K G  SN+F  +SLVD+Y K GC   A  +F  +  ++VV 
Sbjct: 136 ACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVS 195

Query: 305 WNT-------------------------------MISGFSRHARSVEVMILFEKMQ-QAG 332
           WNT                               MISG++R+ +  + + LF +MQ + G
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGG 255

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
           L PN+ T +SVLSAC+H+G ++ GK +    ++++ +   +F  + + D+  + G + EA
Sbjct: 256 LAPNDVTLVSVLSACAHLGALDLGK-WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEA 314


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 341/625 (54%), Gaps = 52/625 (8%)

Query: 21  IASASANANATELSTLQAT-----LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           + S+SA+    +   L A      L  CA  R   R    HA  +  G++ D      L 
Sbjct: 18  LPSSSASTGGQQHGVLTADRVAGLLTGCATLR---RTGELHAAAVRAGVDGDRAVGFRLQ 74

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
             Y+    +     +    P    V + + I ++++ G    A+AL   ML  G  P S 
Sbjct: 75  RAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSH 134

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA-------------- 181
            T+SS L AC     +   + LH +A K A+  + +V TALL +YA              
Sbjct: 135 -TLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE 190

Query: 182 -----------------KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
                            K G + DA  +F+ MP ++ + W++M+ G+ Q+    EAL LF
Sbjct: 191 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 250

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAK 283
           R     G++ ++  I   + A A L     G+ +H+ +  +     N    ++L+DMY K
Sbjct: 251 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 310

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           CG + DA  VF+ I +K++V+WN MI+G++ H  S + + +F +++  GL P + T+I +
Sbjct: 311 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 370

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           L+ACSH G+V++G  +F  M +++ ++P + HY CM+D+LGRAGLI EA+ L+ +M    
Sbjct: 371 LNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAP 430

Query: 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463
              MW SLLA+CR ++N+ L +  A  L      N+G ++LLSNIYAA   WEEVAR R 
Sbjct: 431 DTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRS 490

Query: 464 LIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEH 515
           +++ S ++KE   S +E        + G  +HPR  EIY+ LEK+   +K+ G+ P+TE 
Sbjct: 491 MMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTEL 550

Query: 516 DLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
            LHD+++  K++ L  HSEKLA+ FGL+   PG  I+I+KNLR C DCH+ +K  S+I G
Sbjct: 551 VLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITG 610

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           R+ + RD NRFHHF +GSC+C D+W
Sbjct: 611 RKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 341/625 (54%), Gaps = 52/625 (8%)

Query: 21  IASASANANATELSTLQAT-----LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           + S+SA+    +   L A      L  CA  R   R    HA  +  G++ D      L 
Sbjct: 17  LPSSSASTGGQQHGVLTADRVAGLLTGCATLR---RTGELHAAAVRAGVDGDRAVGFRLQ 73

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
             Y+    +     +    P    V + + I ++++ G    A+AL   ML  G  P S 
Sbjct: 74  RAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSH 133

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA-------------- 181
            T+SS L AC     +   + LH +A K A+  + +V TALL +YA              
Sbjct: 134 -TLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE 189

Query: 182 -----------------KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF 224
                            K G + DA  +F+ MP ++ + W++M+ G+ Q+    EAL LF
Sbjct: 190 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 249

Query: 225 RRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG-FGSNMFAASSLVDMYAK 283
           R     G++ ++  I   + A A L     G+ +H+ +  +     N    ++L+DMY K
Sbjct: 250 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 309

Query: 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISV 343
           CG + DA  VF+ I +K++V+WN MI+G++ H  S + + +F +++  GL P + T+I +
Sbjct: 310 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 369

Query: 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403
           L+ACSH G+V++G  +F  M +++ ++P + HY CM+D+LGRAGLI EA+ L+ +M    
Sbjct: 370 LNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAP 429

Query: 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463
              MW SLLA+CR ++N+ L +  A  L      N+G ++LLSNIYAA   WEEVAR R 
Sbjct: 430 DTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRS 489

Query: 464 LIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEH 515
           +++ S ++KE   S +E        + G  +HPR  EIY+ LEK+   +K+ G+ P+TE 
Sbjct: 490 MMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTEL 549

Query: 516 DLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG 575
            LHD+++  K++ L  HSEKLA+ FGL+   PG  I+I+KNLR C DCH+ +K  S+I G
Sbjct: 550 VLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITG 609

Query: 576 RETIVRDLNRFHHFTNGSCSCWDFW 600
           R+ + RD NRFHHF +GSC+C D+W
Sbjct: 610 RKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 321/557 (57%), Gaps = 10/557 (1%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN 112
           K  H +I+      D      L+  Y++ G +S A KVF+EMP+  +V W+ +I  +  N
Sbjct: 267 KGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326

Query: 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV 172
           G   EAV LFI M RE     +EFT+SS+L  CA  +     +QLH   +K   D +++V
Sbjct: 327 GFCNEAVDLFIRM-REAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYV 385

Query: 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL 232
             AL+DVYAKC  +  A ++F  +  +NEV+W++++ G+       +A  +FR A    +
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQV 445

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292
              + T SS + ACA LA++  G QVH +  KT     +  ++SL+DMYAKCG +  A  
Sbjct: 446 SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQS 505

Query: 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
           VF+ +E  +V  WN +ISG+S H    + + + + M+     PN  T++ VLS CS+ G+
Sbjct: 506 VFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGL 565

Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
           +++G+  F+ M++ H + P + HY+CM+ +LGR+G + +A  LI  +P++ +  +W ++L
Sbjct: 566 IDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAML 625

Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472
           ++  N  N E A  +A+++  + P +   ++L+SN+YA  ++W  VA  RK +++  VKK
Sbjct: 626 SASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKK 685

Query: 473 EKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSR 524
           E   SW+E +G          +HP +  I   LE L  +  + GY P+    L D++D  
Sbjct: 686 EPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEE 745

Query: 525 KQELLIHHSEKLALTFGLMCLCPGVP-IRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
           K + L  HSE+LAL +GL+ +      I IMKNLRIC DCHS MK  S I  R+ ++RD+
Sbjct: 746 KDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDM 805

Query: 584 NRFHHFTNGSCSCWDFW 600
           NRFHHF  G CSC D W
Sbjct: 806 NRFHHFHAGVCSCGDHW 822



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 176/347 (50%), Gaps = 17/347 (4%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L+ C ++  P+  K  H  I+  G   D   +NIL+N Y K G    A  +FDEMP+R
Sbjct: 54  AMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPER 113

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGK--TPYSEFTVSSVLCACAAKRDVFECK 155
             VS+ T+   Y      Q+ + L+  + REG    P+  FT    L     K ++  C 
Sbjct: 114 NNVSFVTLAQGYAC----QDPIGLYSRLHREGHELNPHV-FTSFLKLFVSLDKAEI--CP 166

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215
            LH   +K   D N FVG AL++ Y+ CG +  A  VFE +  ++ V W+ +V+ +V+N 
Sbjct: 167 WLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENG 226

Query: 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAAS 275
            +E++L L    ++ G   N +T  + + A  GL A    K VH  + KT +  +     
Sbjct: 227 YFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGV 286

Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335
            L+ +Y + G + DA+ VF+ + + +VV W+ MI+ F ++    E + LF +M++A + P
Sbjct: 287 GLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVP 346

Query: 336 NEQTYISVLSA-----CSHIGMVEKG---KSYFDLMVKQHNVLPNVF 374
           NE T  S+L+      CS +G    G   K  FDL +   N L +V+
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVY 393



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 138/278 (49%), Gaps = 3/278 (1%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           TL + L  CA  +    G+  H  ++ +G + D   SN LI+ Y+KC  +  A K+F E+
Sbjct: 350 TLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAEL 409

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
             +  VSWNT+I  Y   G   +A ++F   LR  +   +E T SS L ACA+   +   
Sbjct: 410 SSKNEVSWNTVIVGYENLGEGGKAFSMFREALRN-QVSVTEVTFSSALGACASLASMDLG 468

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H  A+K    + V V  +L+D+YAKCG I  A  VF  M   +  +W+++++G+  +
Sbjct: 469 VQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTH 528

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFA 273
            L  +AL +    +    + N  T   V+  C+    + QG++    + +  G    +  
Sbjct: 529 GLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEH 588

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMIS 310
            + +V +  + G +  A  +  GI  E +V++W  M+S
Sbjct: 589 YTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLS 626


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 329/581 (56%), Gaps = 17/581 (2%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            T    L++C    A  +G   H   + +G        N L++ YSKCG I+ A KVF  M
Sbjct: 472  TFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWM 531

Query: 95   PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY--SEFTVSSVLCACAAKRDVF 152
              R ++SWN +I  Y   G    A+A F  M++E K      EFT++S+L AC++   ++
Sbjct: 532  VGRSLISWNAMIAGYVHAGYGSRALATF-GMMQEAKIKERPDEFTLTSLLKACSSTGMIY 590

Query: 153  ECKQLHVFALKAAM--DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
              KQ+H F +++      +  +  +L+D+Y KCG +  A + F+ + E+  ++WSS++ G
Sbjct: 591  AGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILG 650

Query: 211  FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
            + Q   + EA+ LF+R Q L  + + F +SS+I   A  A L QGKQ+ A++ K   G  
Sbjct: 651  YAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLE 710

Query: 271  MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               ++SLVDMY KCG V +A   F+ ++ K+V+ W  MI+G+ +H    + + +F KM +
Sbjct: 711  TSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLR 770

Query: 331  AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
              + P+E  Y++VLSACSH GM+++G+  F  +++   + P V HY+C++D+LGRAG + 
Sbjct: 771  HNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLK 830

Query: 391  EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
            EA  L+  MP      +W +LL+ CR + ++EL +   K L  ++  N  N++++SN+Y 
Sbjct: 831  EAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYG 890

Query: 451  ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
                W E   AR+L     ++KE   SWVEI+        G+ +HP    I   L+++  
Sbjct: 891  QAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVER 950

Query: 503  EMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC---PGVPIRIMKNLR 558
             ++ +LGY    +H+LHD++D  K+E L  HSEKLA+   L        G  IR+ KNLR
Sbjct: 951  RLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLR 1010

Query: 559  ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
            +C DCH F+K  S+I     +VRD  RFH F +G CSC D+
Sbjct: 1011 VCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 193/342 (56%), Gaps = 14/342 (4%)

Query: 58  KIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
           ++ G GLN   +TSN LI+ Y KC     A KVFD MP+R +VSW  ++  +  NG    
Sbjct: 396 RLSGSGLN--LITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNG 453

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           +++LF  M R+G  P +EFT S+ L AC     + +  Q+H F LK   +  V VG +L+
Sbjct: 454 SLSLFTEMGRQGIYP-NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLV 512

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY--N 235
           D+Y+KCG I++A +VF  M  R+ ++W++M+AG+V       AL  F   Q   ++   +
Sbjct: 513 DMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPD 572

Query: 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLVDMYAKCGCVVDAYFV 293
           +FT++S++ AC+    +  GKQ+H  L ++GF   S+     SLVD+Y KCG +  A   
Sbjct: 573 EFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKA 632

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  I+EK ++ W+++I G+++    VE M LF+++Q+     +     S++   +   ++
Sbjct: 633 FDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALL 692

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSC---MIDILGRAGLIHEA 392
           ++GK    L+VK    LP+    S    ++D+  + GL+ EA
Sbjct: 693 QQGKQMQALVVK----LPSGLETSVSNSLVDMYLKCGLVDEA 730


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 287/474 (60%), Gaps = 10/474 (2%)

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
            T S  L A A    + E  Q+H   L+     ++ +GT L+D YAKCG +  A RVF+ 
Sbjct: 101 LTFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDE 160

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           +P R+   W++++AG  Q     EAL LF R +  G + N+ ++   + AC+ L AL  G
Sbjct: 161 IPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAG 220

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVLWNTMISGFSR 314
           + VHA + K     N+   ++++DMYAKCG     + VFS +   K+VV WNTMI  F+ 
Sbjct: 221 EGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAM 280

Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
           H      + LFE+M +  +  +  TY++VL AC+H G+VE+G   FD MV +  V  NV 
Sbjct: 281 HGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVK 339

Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
           HY  ++D+LGRAG + EAY +I +MP      +W SLL +C+ Y N+E+AE+A+++L  M
Sbjct: 340 HYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEM 399

Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--------KRN 486
             ++ G+ +LLSN+YAA  RWE+V R R+ ++  +V+K    S++E++G         ++
Sbjct: 400 GSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQS 459

Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
           HP   EIY+KL+++   +K  GY  ET   LHD+ +  K+  L HHSEKLA+ FGL+   
Sbjct: 460 HPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTS 519

Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            G PIR+ KNLRICGDCH  +K  S+I  +E IVRD  RFH F +GSCSC D+W
Sbjct: 520 EGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 11/311 (3%)

Query: 1   MKSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKII 60
           ++ L R  H  +  +F S+ +          +  T   +L + AR  A       H+ ++
Sbjct: 76  LRGLARGPHPTHALTFLSTILHP--------DALTFSFSLIASARALALSETSQIHSHLL 127

Query: 61  GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
             G + D L    LI+ Y+KCG +  A++VFDE+P R + +WN +I       +  EA+A
Sbjct: 128 RRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALA 187

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           LF  M  EG+   +E +V   L AC+    +   + +H    K  +D NV V  A++D+Y
Sbjct: 188 LFNRMRAEGEK-INEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMY 246

Query: 181 AKCGLISDASRVFESMP-ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239
           AKCG      RVF +M   ++ VTW++M+  F  +     AL LF       +E +  T 
Sbjct: 247 AKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTY 306

Query: 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE- 298
            +V+CAC     + +G ++   +   G   N+    S+VD+  + G + +AY + + +  
Sbjct: 307 LAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPI 366

Query: 299 EKNVVLWNTMI 309
             +VVLW +++
Sbjct: 367 VPDVVLWQSLL 377



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 119/251 (47%), Gaps = 9/251 (3%)

Query: 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248
           A+ +   +P  +   +++++ G  +      AL          L  +  T S  + A A 
Sbjct: 57  AAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTI----LHPDALTFSFSLIASAR 112

Query: 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTM 308
             AL +  Q+H+ L + G  +++   ++L+D YAKCG +  A  VF  I  ++V  WN +
Sbjct: 113 ALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNAL 172

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I+G ++ ++S E + LF +M+  G   NE + +  L+ACS +G +  G+      V++ +
Sbjct: 173 IAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEG-VHACVRKMD 231

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY----RNLELA 424
           +  NV   + +ID+  + G   + + +   M    +   W +++ +   +    R LEL 
Sbjct: 232 LDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELF 291

Query: 425 EIAAKQLFGME 435
           E   K    M+
Sbjct: 292 EEMGKTQVEMD 302


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 318/543 (58%), Gaps = 24/543 (4%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTN-GREQEAVALFINMLREGKTP 132
           LI+F   C       +VF+++       WNT+IG+   +  R+++A+ +F  ML EG   
Sbjct: 71  LIDFDYAC-------RVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVE 123

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
             + T   +L ACA    + E +Q H    K  +D +V+VG +L+ +YA CG +S A +V
Sbjct: 124 PDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKV 183

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           FE MP R+ V+W+ M+  +VQ+ L+E AL LF   Q    E + +T+ S++ ACAG+ AL
Sbjct: 184 FEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQN-SFEPDGYTMQSIVSACAGIGAL 242

Query: 253 IQGKQVHAVLCKTGFGS---NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
             G   HA + +   G+   ++   SSLVDMY+KCG +  A  VF  + + ++  WN+MI
Sbjct: 243 SLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMI 302

Query: 310 SGFSRHARSVEVMILFEKM-QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
              + H R    +  F ++ +     PN  T++ VLSAC+H GMV  G+ YFD+MV  + 
Sbjct: 303 LALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYK 362

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC-RNYRNLELAE-I 426
           + P + HY C++D+L R+G I EA +L+ NM     A +W SLL +C +    +EL+E +
Sbjct: 363 IEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEV 422

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKG--- 483
           A K L   +  ++G +++LS +YA+ R+W +V   RK++ D  V KE   S +EI G   
Sbjct: 423 AFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISH 482

Query: 484 -----KRNHPRIAEIYSKLEKLVEEMKKLGYKPE-TEHDLHDVEDSRKQELLIHHSEKLA 537
                  +HPRI EIY  ++ + E++++ GY P+ ++  + D  D+ KQ+ L  HSE+LA
Sbjct: 483 EFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLA 542

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + FGL+ L PG P+RI KNLR+C DCH   K  S I   E I+RD NRFHHF +G CSC 
Sbjct: 543 IAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCM 602

Query: 598 DFW 600
           DFW
Sbjct: 603 DFW 605



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 149/293 (50%), Gaps = 8/293 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++CA   A   G+  HA+I  +GL+ D    N LI+ Y+ CG +S A KVF++M
Sbjct: 128 TFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKM 187

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R +VSWN +I +Y  +G  + A+ LF+ M  +       +T+ S++ ACA    +   
Sbjct: 188 PLRSLVSWNVMIDAYVQSGLFENALKLFVEM--QNSFEPDGYTMQSIVSACAGIGALSLG 245

Query: 155 KQLHVFALK---AAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
              H + L+    AM  +V + ++L+D+Y+KCG +  A +VFE+MP+ +  +W+SM+   
Sbjct: 246 MWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILAL 305

Query: 212 VQNELYEEALILFRR-AQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGS 269
             +   + AL  F R  ++     N  T   V+ AC     +  G++   ++        
Sbjct: 306 AMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEP 365

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEV 321
            +     LVD+ ++ G + +A  + + +  K + V+W +++    +    VE+
Sbjct: 366 RLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVEL 418


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/551 (38%), Positives = 327/551 (59%), Gaps = 14/551 (2%)

Query: 35   TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            TL +TL SCA     + G+  H   + +GL+ D   SN L+  Y++ G  +   KVF  M
Sbjct: 490  TLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLM 549

Query: 95   PQRCIVSWNTIIGSYT-TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
            P+   VSWN++IG+ + +     +AV  F+ M+R G    S  T  ++L A ++      
Sbjct: 550  PEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR-GGWGLSRVTFINILSAVSSLSLHEV 608

Query: 154  CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFV 212
              Q+H   LK  +  +  +G ALL  Y KCG +++  ++F  M E R+EV+W+SM++G++
Sbjct: 609  SHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYI 668

Query: 213  QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
             NEL  +A+ L       G   + FT ++++ ACA +A L +G +VHA   +    S++ 
Sbjct: 669  HNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVV 728

Query: 273  AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
              S+LVDMY+KCG +  A   F  +  +NV  WN+MISG++RH    + + LF +M   G
Sbjct: 729  VGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDG 788

Query: 333  LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
              P+  T++ VLSACSH+G VE+G  +F  M + + + P V H+SCM+D+LGRAG + E 
Sbjct: 789  QPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEV 848

Query: 393  YDLILNMPFDATASMWGSLLASC--RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
             D I +MP      +W ++L +C   N RN EL   AA+ L  +EP NA N++LL+N+YA
Sbjct: 849  GDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYA 908

Query: 451  ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
            +  +WE+VA+AR  ++++ VKKE   SWV +K        G + HP    IY KL +L  
Sbjct: 909  SGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNR 968

Query: 503  EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            +M+  GY P+T++ L D+E   K+ELL +HSEK+A+ F ++     +PIRIMKNLR+CGD
Sbjct: 969  KMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGD 1027

Query: 563  CHSFMKFASRI 573
            CHS   + S+I
Sbjct: 1028 CHSAFGYISKI 1038



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 199/398 (50%), Gaps = 8/398 (2%)

Query: 46  ERAPVRGKVCHAKIIGMGLNNDTLT-SNILINFYSKCGLISGARKVFDEMPQRCIVSWNT 104
           E    +G+  HA +I  GLN++ +   N L+N Y+K G I+ A  VF+ M ++  VSWN+
Sbjct: 399 EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNS 458

Query: 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164
           +I     N   ++A   F  M R G  P S FT+ S L +CA+   +   +Q+H   LK 
Sbjct: 459 LISGLDQNECSEDAAESFHRMRRTGSMP-SNFTLISTLSSCASLGWIMLGEQIHCDGLKL 517

Query: 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL-YEEALIL 223
            +D +V V  ALL +YA+ G  ++  +VF  MPE ++V+W+S++     +E    +A+  
Sbjct: 518 GLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKY 577

Query: 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283
           F +    G   ++ T  +++ A + L+      Q+HA++ K     +    ++L+  Y K
Sbjct: 578 FLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGK 637

Query: 284 CGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYIS 342
           CG + +   +F+ + E ++ V WN+MISG+  +    + M L   M Q G   +  T+ +
Sbjct: 638 CGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFAT 697

Query: 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402
           +LSAC+ +  +E+G       ++   +  +V   S ++D+  + G I  A      MP  
Sbjct: 698 ILSACASVATLERGMEVHACGIRA-CLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 756

Query: 403 ATASMWGSLLASCRNYRNLE--LAEIAAKQLFGMEPDN 438
              S W S+++    + + E  L       L G  PD+
Sbjct: 757 NVYS-WNSMISGYARHGHGEKALKLFTRMMLDGQPPDH 793



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 190/364 (52%), Gaps = 11/364 (3%)

Query: 57  AKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116
           A++   G   D   S+ L++ +++ GL   A+ +F++M  R +VS N ++       ++ 
Sbjct: 306 ARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ-KQG 364

Query: 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-----CKQLHVFALKAAMDRN-V 170
           EA A   + +++     S+  V  VL +  ++  V E      +++H   ++  ++ N V
Sbjct: 365 EAAAKVFHEMKDLVGINSDSYV--VLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKV 422

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
            +G  L+++YAK G I+DA  VFE M E++ V+W+S+++G  QNE  E+A   F R +  
Sbjct: 423 AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRT 482

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
           G   + FT+ S + +CA L  ++ G+Q+H    K G  +++  +++L+ +YA+ GC  + 
Sbjct: 483 GSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTEC 542

Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSV-EVMILFEKMQQAGLHPNEQTYISVLSACSH 349
             VFS + E + V WN++I   S    SV + +  F +M + G   +  T+I++LSA S 
Sbjct: 543 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSS 602

Query: 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG 409
           + + E       L++K + +  +    + ++   G+ G ++E   +   M        W 
Sbjct: 603 LSLHEVSHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 661

Query: 410 SLLA 413
           S+++
Sbjct: 662 SMIS 665



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 167/330 (50%), Gaps = 25/330 (7%)

Query: 42  SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVS 101
           SC  E A    +  H + I  G   +   SN LIN Y + G +  A+K+FDEM  R +V+
Sbjct: 84  SCCSEEA----RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVT 139

Query: 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK---QLH 158
           W  +I  YT NG+  EA A F +M+R G  P + +   S L AC  +     CK   Q+H
Sbjct: 140 WACLISGYTQNGKPDEACARFRDMVRAGFIP-NHYAFGSALRAC-QESGPSGCKLGVQIH 197

Query: 159 VFALKAAMDRNVFVGTALLDVYAKC-GLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
               K     +V V   L+ +Y  C    +DA  VF+ +  RN ++W+S+++ + +    
Sbjct: 198 GLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDA 257

Query: 218 EEALILFRRAQVLGLEY----NQFTISSVI-CACA----GLAALIQGKQVHAVLCKTGFG 268
             A  LF   Q  GL +    N++T  S+I  AC+    GL  L   +Q+ A + K+GF 
Sbjct: 258 VSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVL---EQMLARVEKSGFL 314

Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
            +++ +S+LV  +A+ G   DA  +F  +  +NVV  N ++ G  +  +      +F +M
Sbjct: 315 QDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM 374

Query: 329 QQ-AGLHPNEQTYISVLSACSHIGMVEKGK 357
           +   G+  N  +Y+ +LSA S   ++E+G+
Sbjct: 375 KDLVGI--NSDSYVVLLSAFSEFSVLEEGR 402



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 152/299 (50%), Gaps = 16/299 (5%)

Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
           E ++LH+ ++K     N+F+   L+++Y + G +  A ++F+ M  RN VTW+ +++G+ 
Sbjct: 89  EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 148

Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSN 270
           QN   +EA   FR     G   N +   S + AC  +G +    G Q+H ++ KT +GS+
Sbjct: 149 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 208

Query: 271 MFAASSLVDMYAKC-GCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +   + L+ MY  C     DA  VF GI  +N + WN++IS +SR   +V    LF  MQ
Sbjct: 209 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 268

Query: 330 QAGL----HPNEQTYISVL-SACSHIGMVEKGKSYFDLM---VKQHNVLPNVFHYSCMID 381
           + GL     PNE T+ S++ +ACS    V+ G    + M   V++   L +++  S ++ 
Sbjct: 269 KEGLGFSFKPNEYTFGSLITTACSS---VDFGLCVLEQMLARVEKSGFLQDLYVSSALVS 325

Query: 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI--AAKQLFGMEPDN 438
              R GL  +A ++   M      SM G ++   +  +    A++    K L G+  D+
Sbjct: 326 GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDS 384



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297
           T  S+I    G     + +++H    K GF  N+F +++L+++Y + G +  A  +F  +
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 132

Query: 298 EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357
             +N+V W  +ISG++++ +  E    F  M +AG  PN   + S L AC      E G 
Sbjct: 133 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQ-----ESGP 187

Query: 358 SYFDLMVKQHNVL 370
           S   L V+ H ++
Sbjct: 188 SGCKLGVQIHGLI 200


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 324/550 (58%), Gaps = 18/550 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D +    L+  Y++   +  AR  FD +    +VSWN +  +Y  + R +EA+ LF  ML
Sbjct: 388 DNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERML 447

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFEC---KQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            EG  P S  T  + L ACAA          K++     +A ++ +  V  A L++YAKC
Sbjct: 448 LEGVRP-SVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKC 506

Query: 184 GLISDASRVFESM-PERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTIS 240
           G ++DA  VFE + P R + +TW+SM+A +  + L +EA  LF+  +   L + N+ T  
Sbjct: 507 GSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFV 566

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF--SGIE 298
           +V+ A     ++ QG+++HA +   GF S+    ++L++MYAKCG + DA  +F  S   
Sbjct: 567 AVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSN 626

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           +++V+ W ++I+G++++ ++   + LF  MQQ G+ PN  T+IS L+AC+H G +E+G  
Sbjct: 627 QEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCE 686

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
               M   H +LP   H+SC++D+LGR G + EA  L L     A    W +LL +C+N 
Sbjct: 687 LLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKL-LERTSQADVITWMALLDACKNS 745

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
           + LE  E  A+++  ++P+ A ++++L+++YAA  RW E A  RK + D  ++ +   S 
Sbjct: 746 KELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSA 805

Query: 479 VEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           VE+         G ++HP+  EIY +LE+L   +K  GY  +T   LHDV    K+ LL+
Sbjct: 806 VEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLM 865

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
            HSEKLA+ FGLM    G P+R++KNLR+C DCH+  K  S++ GR+ ++RD +R+HHFT
Sbjct: 866 RHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFT 925

Query: 591 NGSCSCWDFW 600
           +G+CSC D+W
Sbjct: 926 SGTCSCGDYW 935



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 167/310 (53%), Gaps = 16/310 (5%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTIIGS 108
           G+  H++I       +++  N LI+ YSKCG +  A++ FD +P   +R +V+WN +I +
Sbjct: 160 GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC--AAKRDVFECKQLHVFALKAAM 166
           +  NG  +EA+ LF +M R+G  P +  T  SVL +C  A    + + + +H   + A +
Sbjct: 220 FLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGI 279

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVF----ESMPERNEVTWSSMVAGFVQNELYEEALI 222
           +R  FV TAL+D Y K G + DA  VF    +  P  + VT S+M++   QN   +E+L 
Sbjct: 280 EREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLR 339

Query: 223 LFRRAQVLGLEYNQFTISSVICACA----GLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           LF    + G + +  T+ SV+ AC+    G A     +Q   V+  T    +    ++L+
Sbjct: 340 LFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSAT---RDNVLGTTLL 396

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
             YA+   +  A   F  I+  +VV WN M + + +H RS E ++LFE+M   G+ P+  
Sbjct: 397 TTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVA 456

Query: 339 TYISVLSACS 348
           T+I+ L+AC+
Sbjct: 457 TFITALTACA 466



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 192/393 (48%), Gaps = 32/393 (8%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF----DEMPQRCIVSWNTIIGS 108
           +  H +I+G G+  +      L++ Y K G +  A +VF    DE P   +V+ + +I +
Sbjct: 268 RAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISA 327

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD- 167
              NG  QE++ LF  M  EG  P S  T+ SVL AC+    + +      F L+ AM+ 
Sbjct: 328 CWQNGWPQESLRLFFAMNLEGTKP-SGVTLVSVLNACS----MLQVGSATAFVLEQAMEV 382

Query: 168 ----RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALIL 223
               R+  +GT LL  YA+   +  A   F+++   + V+W++M A ++Q+    EAL+L
Sbjct: 383 VSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVL 442

Query: 224 FRRAQVLGLEYNQFTISSVICACAGL---AALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           F R  + G+  +  T  + + ACA      A   GK++ ++L + G   +   A++ ++M
Sbjct: 443 FERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNM 502

Query: 281 YAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNE 337
           YAKCG + DA  VF  I    ++ + WN+M++ +  H    E   LF+ M+   L  PN+
Sbjct: 503 YAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNK 562

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+++VL A +    + +G+     +V        V   + ++++  + G + +A  +  
Sbjct: 563 VTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQ-NALLNMYAKCGSLDDAQAI-- 619

Query: 398 NMPFDATAS------MWGSLLASCRNYRNLELA 424
              FD ++S       W SL+A    Y   E A
Sbjct: 620 ---FDKSSSNQEDVIAWTSLIAGYAQYGQAERA 649



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 176/343 (51%), Gaps = 18/343 (5%)

Query: 18  SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIG--MGLNNDTLTSNILI 75
           ++A++   A+      ST    LQ+C R RA  +G+  HA I+   + L+N +  ++ LI
Sbjct: 28  TAAVSRIIADQGHCAPSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLI 87

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
             ++KCG ++ A  + D      + S   +I ++  +GR  +A+ LF  M    +   + 
Sbjct: 88  VMHAKCGNLAEAEALADRFAS--VYSCTAMIRAWMEHGRPDKAMELFDRM----EVRPNC 141

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
             + +++ AC+   ++   +++H        + N  +G AL+ +Y+KCG + DA + F+ 
Sbjct: 142 HALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDR 201

Query: 196 MP---ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTISSVICAC--AGL 249
           +P   +R+ VTW++M++ F++N    EAL LFR     G    N  T  SV+ +C  AGL
Sbjct: 202 LPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGL 261

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF--SGIEEK--NVVLW 305
            +L   + +H  +   G     F  ++LVD Y K G + DA+ VF   G EE   ++V  
Sbjct: 262 LSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTC 321

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           + MIS   ++    E + LF  M   G  P+  T +SVL+ACS
Sbjct: 322 SAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACS 364



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%), Gaps = 20/291 (6%)

Query: 33  LSTLQATLQSCA---RERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           ++T    L +CA    + A   GK   + +   GL  DT  +N  +N Y+KCG ++ AR 
Sbjct: 455 VATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARA 514

Query: 90  VFDEM--PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           VF+ +   +R  ++WN+++ +Y  +G  +EA  LF  M  E     ++ T  +VL A  +
Sbjct: 515 VFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 574

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE--VTWS 205
           +  + + +++H   +    + +  +  ALL++YAKCG + DA  +F+      E  + W+
Sbjct: 575 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 634

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV------- 258
           S++AG+ Q    E AL LF   Q  G+  N  T  S + AC     L QG ++       
Sbjct: 635 SLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPD 694

Query: 259 HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
           H +L      S  F  S +VD+  +CG + +A  +     + +V+ W  ++
Sbjct: 695 HGILP----ASKHF--SCIVDLLGRCGRLDEAEKLLERTSQADVITWMALL 739



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 144/271 (53%), Gaps = 18/271 (6%)

Query: 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMD--RNVFVGTALLDVYAKCGLISDASRVFE 194
           T   +L AC   R + + ++LH   L   +D   + F+ + L+ ++AKCG +++A    E
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEA----E 100

Query: 195 SMPERNEVTWS--SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252
           ++ +R    +S  +M+  ++++   ++A+ LF R +V     N   + +++ AC+ L  L
Sbjct: 101 ALADRFASVYSCTAMIRAWMEHGRPDKAMELFDRMEV---RPNCHALIALVNACSCLGNL 157

Query: 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVVLWNTMI 309
             G+++H+ +    F  N    ++L+ MY+KCG ++DA   F  +    +++VV WN MI
Sbjct: 158 AAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMI 217

Query: 310 SGFSRHARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIGM--VEKGKSYFDLMVKQ 366
           S F R+  + E + LF  M + G   PN  T++SVL +C   G+  +E  ++    +V  
Sbjct: 218 SAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGA 277

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
             +    F  + ++D  G+ G + +A+++ L
Sbjct: 278 -GIEREAFVRTALVDSYGKLGSLDDAWEVFL 307


>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
 gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
          Length = 688

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 322/555 (58%), Gaps = 18/555 (3%)

Query: 63  GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF 122
           G + D  T N ++  Y +CG+++ AR+ FD MP R  V+W  ++G     G+ + A+ALF
Sbjct: 135 GFDLDLYTHNHVLRTYLECGMLAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRAALALF 194

Query: 123 INML------REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV---FVG 173
             ML       +G  P     V ++  A A+       +QLH   +KA    +V   ++ 
Sbjct: 195 REMLLAEEAGGDGDAPPPRSLVVALRAATASG-SARAGQQLHCCVVKAGACGDVADRYLA 253

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
            ALLD+Y+KCGLI +A RVF+ +P  + V W+SM+A +V +   EEAL L++      + 
Sbjct: 254 CALLDMYSKCGLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVA 313

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            +QFT S+++   + L  L   KQ HA L + G   ++   ++LVD+Y K G + DA  V
Sbjct: 314 MDQFTFSTMLGVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMEDARNV 373

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +  +N++ WN +I+G+  H    + + +FE++   G+ PN  T+++VL+AC   G+V
Sbjct: 374 FERMPRRNLISWNALIAGYGYHGMGDKAIEMFERLIAEGVVPNHVTFLAVLNACRFSGLV 433

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           +KGK  F LM +   + P   HY+C+I++ GR GL+ EAY +I   PF  TA+MWG+LL 
Sbjct: 434 DKGKRIFQLMTENLRMKPRAMHYACVIELFGREGLLDEAYSMIRRAPFTPTANMWGALLT 493

Query: 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473
           + R ++N+ LA++AA+QL  MEP+   ++ +L N+Y ++ R ++  +  + ++   +   
Sbjct: 494 ASRIHKNMHLAKLAAEQLLAMEPEKINSYAVLLNLYVSSGRQDDACKVVETLKRKGLYIH 553

Query: 474 KSKSWVEIKGKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK 525
            + +W+ +K   +        HP+ AEIY +L  L++++++ GY  E    L D+    +
Sbjct: 554 NACTWITVKKTDHKFFFKDTLHPQSAEIYRRLHTLMKDVREAGYVAEENELLPDIYPDEQ 613

Query: 526 QELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNR 585
           +    +HSE+LA+ FGLM   P  P+RI ++ R+C DCH  +KF + +  RE +VRD +R
Sbjct: 614 KVSSAYHSERLAIAFGLMSTAPQTPLRINQSHRLCRDCHKVIKFVAEVTKREIVVRDGSR 673

Query: 586 FHHFTNGSCSCWDFW 600
           FHHF  G CSC D+W
Sbjct: 674 FHHFKLGICSCGDYW 688


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/582 (35%), Positives = 328/582 (56%), Gaps = 17/582 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    L++C    A  +G   H   + +G        N L++ YSKCG I+ A KVF  +
Sbjct: 109 TFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI 168

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREG--KTPYSEFTVSSVLCACAAKRDVF 152
             R ++SWN +I  +   G   +A+  F  M++E   K    EFT++S+L AC++   ++
Sbjct: 169 VDRSLISWNAMIAGFVHAGYGSKALDTF-GMMQEANIKERPDEFTLTSLLKACSSTGMIY 227

Query: 153 ECKQLHVFALKAAM--DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
             KQ+H F +++      +  +  +L+D+Y KCG +  A + F+ + E+  ++WSS++ G
Sbjct: 228 AGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILG 287

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           + Q   + EA+ LF+R Q L  + + F +SS+I   A  A L QGKQ+ A+  K   G  
Sbjct: 288 YAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLE 347

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
               +S+VDMY KCG V +A   F+ ++ K+V+ W  +I+G+ +H    + + +F +M +
Sbjct: 348 TSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLR 407

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
             + P+E  Y++VLSACSH GM+++G+  F  +++ H + P V HY+C++D+LGRAG + 
Sbjct: 408 HNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLK 467

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA  LI  MP      +W +LL+ CR + ++EL +   K L  ++  N  N++++SN+Y 
Sbjct: 468 EAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYG 527

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVE 502
               W E   AR+L     +KKE   SWVEI+        G+ +HP    I   L++   
Sbjct: 528 QAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAER 587

Query: 503 EMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC---PGVPIRIMKNLR 558
            ++ +LGY    +H+LHD++D  K+E L  HSEKLA+   L        G  IR+ KNLR
Sbjct: 588 RLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLR 647

Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           +C DCH F+K  S+I     +VRD  RFH F +G CSC D+W
Sbjct: 648 VCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 203/365 (55%), Gaps = 12/365 (3%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
            L + L+ C R+    +G   H  ++  G   + +TSN LI+ Y KC     A KVFD M
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P+R +VSW+ ++  +  NG  + +++LF  M R+G  P +EFT S+ L AC     + + 
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYP-NEFTFSTNLKACGLLNALEKG 126

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
            Q+H F LK   +  V VG +L+D+Y+KCG I++A +VF  + +R+ ++W++M+AGFV  
Sbjct: 127 LQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHA 186

Query: 215 ELYEEALILFRRAQVLGLEY--NQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSN 270
               +AL  F   Q   ++   ++FT++S++ AC+    +  GKQ+H  L ++GF   S+
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSS 246

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
                SLVD+Y KCG +  A   F  I+EK ++ W+++I G+++    VE M LF+++Q+
Sbjct: 247 ATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQE 306

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM---IDILGRAG 387
                +     S++   +   ++ +GK    L VK    LP+    S +   +D+  + G
Sbjct: 307 LNSQIDSFALSSIIGVFADFALLRQGKQMQALAVK----LPSGLETSVLNSVVDMYLKCG 362

Query: 388 LIHEA 392
           L+ EA
Sbjct: 363 LVDEA 367



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 150/287 (52%), Gaps = 10/287 (3%)

Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
           P     + S+L  C  K    +  Q+H + LK+    N+     L+D+Y KC     A +
Sbjct: 3   PNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62

Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
           VF+SMPERN V+WS++++G V N   + +L LF      G+  N+FT S+ + AC  L A
Sbjct: 63  VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
           L +G Q+H    K GF   +   +SLVDMY+KCG + +A  VF  I +++++ WN MI+G
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182

Query: 312 FSRHARSVEVMILFEKMQQAGL--HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           F       + +  F  MQ+A +   P+E T  S+L ACS  GM+  GK     +V+    
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242

Query: 370 LPNVFHYS-CMIDILGRAGLI---HEAYDLILNMPFDATASMWGSLL 412
            P+    +  ++D+  + G +    +A+D I     + T   W SL+
Sbjct: 243 CPSSATITGSLVDLYVKCGYLFSARKAFDQIK----EKTMISWSSLI 285


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/586 (35%), Positives = 323/586 (55%), Gaps = 20/586 (3%)

Query: 27  NANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISG 86
           +  + E++     L +C R +    G+  HA+I+  G  +    +N ++  Y KCG +  
Sbjct: 27  DQGSREVTEYLDLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMED 86

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
             + F  M +R IVSWN +I +Y  N R  +A+ +F+ ML +G  P S  T +SVL A A
Sbjct: 87  LSRAFSGMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQP-SYVTFTSVLNAFA 145

Query: 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206
                   K +H  AL+     +  V TALL++Y+K G I  A +VF+ +  ++ V+WS+
Sbjct: 146 GPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSN 205

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266
           M+A + Q     EAL +F R    G++ N  T  +V+ AC  +A +   + +H  + + G
Sbjct: 206 MIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAG 265

Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
             SN    ++L++MY KCG + +A  +F  + E++VV+W+ ++  ++RH      + LF 
Sbjct: 266 LESNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFT 325

Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
            MQQ G+ PN+ T++ VL AC H G V +G+ +F  +V+ H + P   H  CM+D+LGRA
Sbjct: 326 LMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRA 385

Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
           G + EA   I  MP    A  W   L SCR+Y +LE  + AA+++F   P     +L L+
Sbjct: 386 GKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLA 445

Query: 447 NIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRN--------HPRIAEIYSKLE 498
           ++Y      EE     +L+     KKE   S + ++G+ +        HP+  EIYS L+
Sbjct: 446 SMYTDAGMPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLD 505

Query: 499 KLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG---VPIRIMK 555
           +L     +LGY P+T   L     S +++L   HSE+LAL FG M + PG    PI I+K
Sbjct: 506 ELHARALELGYVPDTRPLL---LGSVERKL---HSERLALAFGAMSV-PGKRNSPIHIIK 558

Query: 556 NLRICGDCHSFMKFASR-IAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           NLR+C DCH F KF SR + GRE IVRD +RFH F +G CSC D+W
Sbjct: 559 NLRVCRDCHEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 152/291 (52%), Gaps = 4/291 (1%)

Query: 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181
           +I  L +G    +E+    +L AC   +++   ++LH   +       +F+   +L +Y 
Sbjct: 22  YILRLDQGSREVTEYL--DLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYG 79

Query: 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISS 241
           KCG + D SR F  M  RN V+W+++++ + QN+   +A+++F R  + G++ +  T +S
Sbjct: 80  KCGGMEDLSRAFSGMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTS 139

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301
           V+ A AG       K VH +  + GFGS+   A++L++MY+K G +  A  VF  +  K+
Sbjct: 140 VLNAFAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKD 199

Query: 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
           VV W+ MI+ +++     E + +F +M   G+  N  T+++V+ AC  +  +   ++   
Sbjct: 200 VVSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVTVVHACVLVARITDART-IH 258

Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
             + +  +  N    + ++++ G+ G + EA   I +   +    +W ++L
Sbjct: 259 CRIIEAGLESNTVLGTALLNMYGKCGGLAEAKK-IFDKLAERDVVVWSAIL 308


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/550 (36%), Positives = 325/550 (59%), Gaps = 18/550 (3%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D +    L+  Y++   +S AR  FD +    +VSWN +  +Y  + R +EA+ LF  ML
Sbjct: 254 DNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERML 313

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFEC---KQLHVFALKAAMDRNVFVGTALLDVYAKC 183
            EG  P S  T  + L ACAA          K++     +A ++ +  V  A L++YAKC
Sbjct: 314 LEGVRP-SVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKC 372

Query: 184 GLISDASRVFESM-PERNE-VTWSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTIS 240
           G ++DA  VFE + P R + +TW+SM+A +  + L +EA  LF+  +   L + N+ T  
Sbjct: 373 GSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFV 432

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF--SGIE 298
           +V+ A     ++ QG+++HA +   GF S+    ++L++MYAKCG + DA  +F  S   
Sbjct: 433 AVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSN 492

Query: 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
           +++V+ W ++++G++++ ++   + LF  MQQ G+ PN  T+IS L+AC+H G +E+G  
Sbjct: 493 QEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCE 552

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418
               M   H ++P   H+SC++D+LGR G + EA  L L     A    W +LL +C+N 
Sbjct: 553 LLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKL-LERTSQADVITWMALLDACKNS 611

Query: 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478
           + LE  E  A+++  ++P+ A ++++L+++YAA  RW E A  RK + D  ++ +   S 
Sbjct: 612 KELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSA 671

Query: 479 VEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLI 530
           VE+         G ++HP+  EIY +LE+L   +K  GY  +T   LHDV    K+ LL+
Sbjct: 672 VEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLM 731

Query: 531 HHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590
            HSEKLA+ FGLM    G P+R++KNLR+C DCH+  K  S++ GR+ ++RD +R+HHFT
Sbjct: 732 RHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFT 791

Query: 591 NGSCSCWDFW 600
           +G+CSC D+W
Sbjct: 792 SGTCSCGDYW 801



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 52  GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTIIGS 108
           G+  H++I       +++  N LI+ YSKCG +  A++ FD +P   +R +V+WN +I +
Sbjct: 26  GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 85

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC--AAKRDVFECKQLHVFALKAAM 166
           +  NG  +EA+ LF +M  +G  P +  T  SVL +C  A    + + + +H   + A +
Sbjct: 86  FLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGI 145

Query: 167 DRNVFVGTALLDVYAKCGLISDASRVF----ESMPERNEVTWSSMVAGFVQNELYEEALI 222
           +R  FV TAL+D Y K G + DA  VF    +  P  + VT S+M++   QN   +E+L 
Sbjct: 146 EREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLR 205

Query: 223 LFRRAQVLGLEYNQFTISSVICACA----GLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
           LF    + G + +  T+ SV+ AC+    G A     +Q   V+  T    +    ++L+
Sbjct: 206 LFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSAT---RDNVLGTTLL 262

Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
             YA+   +  A   F  I+  +VV WN M + + +H R  E ++LFE+M   G+ P+  
Sbjct: 263 TTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVA 322

Query: 339 TYISVLSACS 348
           T+I+ L+AC+
Sbjct: 323 TFITALTACA 332



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 192/393 (48%), Gaps = 32/393 (8%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF----DEMPQRCIVSWNTIIGS 108
           +  H +I+G G+  +      L++ Y K G +  A +VF    DE P   +V+ + +I +
Sbjct: 134 RAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISA 193

Query: 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD- 167
              NG  QE++ LF  M  EG  P S  T+ SVL AC+    +        F L+ AM+ 
Sbjct: 194 CWQNGWPQESLRLFYAMNLEGTKP-SGVTLVSVLNACS----MLPVGSATAFVLEQAMEV 248

Query: 168 ----RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALIL 223
               R+  +GT LL  YA+   +S A   F+++   + V+W++M A ++Q+    EAL+L
Sbjct: 249 VSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVL 308

Query: 224 FRRAQVLGLEYNQFTISSVICACAGL---AALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280
           F R  + G+  +  T  + + ACA      A   GK++ ++L + G   +   A++ ++M
Sbjct: 309 FERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNM 368

Query: 281 YAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNE 337
           YAKCG + DA  VF  I    ++ + WN+M++ +  H    E   LF+ M+   L  PN+
Sbjct: 369 YAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNK 428

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T+++VL A +    + +G+     +V        V   + ++++  + G + +A  +  
Sbjct: 429 VTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQ-NALLNMYAKCGSLDDAQAI-- 485

Query: 398 NMPFDATAS------MWGSLLASCRNYRNLELA 424
              FD ++S       W SL+A    Y   E A
Sbjct: 486 ---FDKSSSNQEDVIAWTSLVAGYAQYGQAERA 515



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 141/285 (49%), Gaps = 8/285 (2%)

Query: 33  LSTLQATLQSCA---RERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
           ++T    L +CA    + A   GK   + +   GL  DT  +N  +N Y+KCG ++ AR 
Sbjct: 321 VATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARA 380

Query: 90  VFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147
           VF+ +   +R  ++WN+++ +Y  +G  +EA  LF  M  E     ++ T  +VL A  +
Sbjct: 381 VFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 440

Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE--VTWS 205
           +  + + +++H   +    + +  +  ALL++YAKCG + DA  +F+      E  + W+
Sbjct: 441 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 500

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           S+VAG+ Q    E AL LF   Q  G+  N  T  S + AC     L QG ++ + +   
Sbjct: 501 SLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPD 560

Query: 266 -GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
            G        S +VD+  +CG + +A  +     + +V+ W  ++
Sbjct: 561 HGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALL 605



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 89/169 (52%), Gaps = 7/169 (4%)

Query: 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294
           N   + +++ AC+ L  L  G+++H+ +    F  N    ++L+ MY+KCG ++DA   F
Sbjct: 6   NCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAF 65

Query: 295 SGI---EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHI 350
             +    +++VV WN MIS F R+  + E + LF  M   G   PN  T++SVL +C   
Sbjct: 66  DRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEA 125

Query: 351 GM--VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
           G+  +E  ++    +V    +    F  + ++D  G+ G + +A+++ L
Sbjct: 126 GLLSLEDVRAIHGRIVGA-GIEREAFVRTALVDSYGKLGSLDDAWEVFL 173


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 336/595 (56%), Gaps = 45/595 (7%)

Query: 50  VRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG--------------------------- 82
           + G+  HA  + +GL  D    N LI FYSK G                           
Sbjct: 281 MEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAY 340

Query: 83  ----LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV 138
               L++ A KVFDEMP++  VS+NT++  +  N +  EA+ LF+ M+ EG    ++F++
Sbjct: 341 MEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEG-LELTDFSL 399

Query: 139 SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF--ESM 196
           +SV+ AC    D    KQ+H FA+K     N +V  ALLD+Y +CG + DA ++F    +
Sbjct: 400 TSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWEL 459

Query: 197 PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQG 255
            E + V W++M+ G+ +N   EEA+ LF   +  G +  ++   +S++  C  +  L  G
Sbjct: 460 EEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMG 519

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH 315
           KQ+H  + K G G N+   +++V MY KCG V DA  VF  +   ++V WNT+ISG   H
Sbjct: 520 KQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMH 579

Query: 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSAC--SHIGMVEKGKSYFDLMVKQHNVLPNV 373
            +    + ++ +M   G+ PN+ T++ ++SA   +++ +V+  ++ F+ M   + + P  
Sbjct: 580 RQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDDCRNLFNSMRTVYQIEPTS 639

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
            HY+  I +LG  GL+ EA + I NMPF  +A +W  LL  CR ++N  + + AA+ +  
Sbjct: 640 RHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLLDGCRLHKNELIGKWAAQNILA 699

Query: 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------R 485
           +EP +    +L+SN+Y+A+ RW+     R+ +R+   +K  ++SW+  + K        R
Sbjct: 700 LEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPAQSWIVCEKKINSFYPRDR 759

Query: 486 NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCL 545
           +HP+  +I   LE L+ E  K+GY+P+T   LH+VE+  K+  L HHS KLA T+G++  
Sbjct: 760 SHPQEKDIQRGLEILILECLKIGYEPDTSFVLHEVEEHHKKIFLFHHSAKLAATYGILMT 819

Query: 546 CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            PG PIRI+KN+ +CGDCH+F+K+AS +  R+  +RD + FH F+NG CSC D W
Sbjct: 820 KPGKPIRIVKNILLCGDCHAFLKYASIVTKRDIFLRDSSGFHCFSNGQCSCKDCW 874



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 203/428 (47%), Gaps = 42/428 (9%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           E  +L   L   +R       K  HA ++      DT  SN LI+ Y K  L   A ++F
Sbjct: 63  ESHSLLHALHVSSRSGDTHLAKTVHATLLKRD-EEDTHLSNALISTYLKLNLFPHALRLF 121

Query: 92  DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
             +P   +VS+ T+I S+ +  R+  A+ LF+ M      P +E+T  +VL AC++    
Sbjct: 122 LSLPSPNVVSYTTLI-SFLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHH 180

Query: 152 FECK-QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           F    QLH  ALK A   + FV  AL+ +YAK      A ++F  +P R+  +W+++++ 
Sbjct: 181 FHFGLQLHAAALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISA 240

Query: 211 FVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +Q+ LY+ A  LFR  Q       + FT+S ++ A    A+L++G+QVHA   K G  +
Sbjct: 241 ALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTAS---ASLMEGQQVHAHAVKLGLET 297

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW------------------------ 305
           ++   + L+  Y+K G V D  ++F G+  ++V+ W                        
Sbjct: 298 DLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMP 357

Query: 306 -------NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
                  NT+++GF R+ +  E M LF +M + GL   + +  SV+ AC  +G  +  K 
Sbjct: 358 EKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQ 417

Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATAS-MWGSLLASCRN 417
                VK      N +  + ++D+  R G + +A  + L    +  +S +W +++  C  
Sbjct: 418 VHGFAVK-FGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMI--CGY 474

Query: 418 YRNLELAE 425
            RN +  E
Sbjct: 475 ARNGQPEE 482


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/575 (34%), Positives = 330/575 (57%), Gaps = 19/575 (3%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L +C  E + ++GK  H  +I  GL  D      L++ Y KCG ++ AR VF  MP R
Sbjct: 214 AALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +V+WN +IG Y  N R  EA   F+ M  EG       T  ++L ACA        + +
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEG-LQVEVVTAINLLAACAQTESSLYGRSV 332

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H + ++     +V + TALL++Y K G +  + ++F  +  +  V+W++M+A ++  E+Y
Sbjct: 333 HGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMY 392

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EA+ LF       L  + FT+S+V+ A   L +L   +Q+H+ +   G+  N    +++
Sbjct: 393 TEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAV 452

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MYA+ G VV +  +F  +  K+V+ WNTMI G++ H +    + +F++M+  GL PNE
Sbjct: 453 LHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNE 512

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++SVL+ACS  G+V++G  +F+LM++++ ++P + HY CM D+LGR G + E    I 
Sbjct: 513 STFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIE 572

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +MP D T+ +WGSLL + RN  ++++AE AA+++F +E DN G +++LS++YA   RWE+
Sbjct: 573 SMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWED 632

Query: 458 VARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPR---IAEIYSKLEKLVEEMKK 506
           V R R L+++  +++ +  S VE+         G  +H +   I E+ + L + +EE   
Sbjct: 633 VERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRKIEETD- 691

Query: 507 LGYKPETEHDLHDVE-DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
                +T +  + V   +R   +   HS +LA+ FGL+    G PI + KN+RIC  CH 
Sbjct: 692 -----DTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHH 746

Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            +K  SR +GR  +V D   +H F++GSC C D+W
Sbjct: 747 ALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 171/317 (53%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    ++ CAR      G+  H  +I +GL +D  T N L+ FY+K GL+  A +VFD M
Sbjct: 109 TFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGM 168

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R IV+WNT++  Y +NG    A+A F  M    +  +    + + L AC  +    + 
Sbjct: 169 PVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H + ++  +++++ VGT+LLD+Y KCG ++ A  VF +MP R  VTW+ M+ G+  N
Sbjct: 229 KEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  +EA   F + +  GL+    T  +++ ACA   + + G+ VH  + +  F  ++   
Sbjct: 289 ERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLE 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY K G V  +  +F  I  K +V WN MI+ +       E + LF ++    L+
Sbjct: 349 TALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLY 408

Query: 335 PNEQTYISVLSACSHIG 351
           P+  T  +V+ A   +G
Sbjct: 409 PDYFTMSTVVPAFVLLG 425



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 165/313 (52%), Gaps = 4/313 (1%)

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFAL 162
           N +I  +   G    A+A +  ML +G  P   FT   V+  CA    + E +  H   +
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARP-DRFTFPVVVKCCARLGGLDEGRAAHGMVI 134

Query: 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
           K  ++ +V+   +L+  YAK GL+ DA RVF+ MP R+ VTW++MV G+V N L   AL 
Sbjct: 135 KLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALA 194

Query: 223 LFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            F+     L ++++   I + + AC    + +QGK++H  + + G   ++   +SL+DMY
Sbjct: 195 CFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMY 254

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
            KCG V  A  VF+ +  + VV WN MI G++ + R  E    F +M+  GL     T I
Sbjct: 255 CKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAI 314

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++L+AC+       G+S    +V++   LP+V   + ++++ G+ G + E+ + I     
Sbjct: 315 NLLAACAQTESSLYGRSVHGYVVRRQ-FLPHVVLETALLEMYGKVGKV-ESSEKIFGKIA 372

Query: 402 DATASMWGSLLAS 414
           + T   W +++A+
Sbjct: 373 NKTLVSWNNMIAA 385



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 125/259 (48%), Gaps = 10/259 (3%)

Query: 31  TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90
            E+ T    L +CA+  + + G+  H  ++        +    L+  Y K G +  + K+
Sbjct: 308 VEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKI 367

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           F ++  + +VSWN +I +Y       EA+ LF+ +L +   P   FT+S+V+ A      
Sbjct: 368 FGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYP-DYFTMSTVVPAFVLLGS 426

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +  C+Q+H + +      N  +  A+L +YA+ G +  +  +F+ M  ++ ++W++M+ G
Sbjct: 427 LRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMG 486

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +  +   + AL +F   +  GL+ N+ T  SV+ AC+ ++ L+    +H  L    +G  
Sbjct: 487 YAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS-VSGLVDEGWMHFNLMLQEYG-- 543

Query: 271 MFAASSLVDMYAKCGCVVD 289
                 ++      GC+ D
Sbjct: 544 ------MIPQIEHYGCMTD 556



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           ++ SLV   A  G + +A    + +   +  L N MI GF+        +  +  M + G
Sbjct: 43  SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDG 102

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK---QHNVLPNVFHYSC--MIDILGRAG 387
             P+  T+  V+  C+ +G +++G++   +++K   +H+V      Y+C  ++    + G
Sbjct: 103 ARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDV------YTCNSLVAFYAKLG 156

Query: 388 LIHEAYDLILNMPFDATASMWGSLL 412
           L+ +A  +   MP     + W +++
Sbjct: 157 LVEDAERVFDGMPVRDIVT-WNTMV 180


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 325/578 (56%), Gaps = 48/578 (8%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T   +L+   R+ A   GK      +  G +++       I+ +S CG++  A KVFD M
Sbjct: 109 TFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD-M 167

Query: 95  PQRC-IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS---VLCACAAKRD 150
              C +V+WN ++  Y                         +F +S    VL AC+  +D
Sbjct: 168 GDACEVVTWNIMLSGYNR---------------------VKQFKISKMLLVLSACSKLKD 206

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K  H+F            G  +  ++A CG + +A  VF++M  R+ V+W++M+ G
Sbjct: 207 LEWGK--HIF--------KYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDG 256

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN 270
           +++   +  AL LFR  Q+  ++ ++FT+ S++ ACA L AL  G+ V   + K    ++
Sbjct: 257 YLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKND 316

Query: 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ 330
            F  ++LVDMY KCG V  A  VF  + +K+   W TMI G + +    E + +F  M +
Sbjct: 317 SFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIE 376

Query: 331 AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390
           A + P+E TYI VL AC    MV+KGKS+F  M  QH + P V HY CM+D+LG  G + 
Sbjct: 377 ASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLE 432

Query: 391 EAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450
           EA ++I+NMP    + +WGS L +CR ++N++LA++AAKQ+  +EP+N   ++LL NIYA
Sbjct: 433 EALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYA 492

Query: 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVE 502
           A+++WE + + RKL+ +  +KK    S +E        + G ++HP+  EIY+KLE +++
Sbjct: 493 ASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQ 552

Query: 503 EMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGD 562
            + K GY P+T     D+ +  K+  L  HSEKLA+ + L+   PGV IRI+KNLR+C D
Sbjct: 553 GLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVD 612

Query: 563 CHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           CH   K  S+   RE IV+D  RFHHF +GSCSC +FW
Sbjct: 613 CHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 173/367 (47%), Gaps = 38/367 (10%)

Query: 53  KVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYT 110
           K  H+  I MGL++D L  N +I F    + G ++ A +VFD +P   +  WNT+I  Y+
Sbjct: 24  KQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYS 83

Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
                +  V++++ ML     P   FT    L        +   K+L   A+K   D N+
Sbjct: 84  KISHPENGVSMYLLMLTSNIKP-DRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNL 142

Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
           FV  A + +++ CG++  A +VF+       VTW+ M++G             + R +  
Sbjct: 143 FVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSG-------------YNRVK-- 187

Query: 231 GLEYNQFTISS---VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
                QF IS    V+ AC+ L  L  GK +   +   G   +MFAA         CG +
Sbjct: 188 -----QFKISKMLLVLSACSKLKDLEWGKHIFKYI-NGGIVEHMFAA---------CGEM 232

Query: 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347
            +A  VF  ++ ++VV W  MI G+ R    +  + LF +MQ + + P+E T +S+L AC
Sbjct: 233 DEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIAC 292

Query: 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASM 407
           + +G +E G+ +    + +++   + F  + ++D+  + G + +A  +   M +      
Sbjct: 293 ALLGALELGE-WVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEM-YQKDKFT 350

Query: 408 WGSLLAS 414
           W +++  
Sbjct: 351 WTTMIVG 357



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 25/217 (11%)

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYA--KCGLISDASRVFESMPERNEVTWSS 206
           + +++ KQ+H   +K  +  +      ++      + G ++ A +VF+++P  +   W++
Sbjct: 18  KSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNT 77

Query: 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQV--HAVLCK 264
           M+ G+ +    E  + ++       ++ ++FT    +       AL  GK++  HAV  K
Sbjct: 78  MIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAV--K 135

Query: 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-SVEVMI 323
            GF SN+F   + + M++ CG V  A+ VF   +   VV WN M+SG++R  +  +  M+
Sbjct: 136 HGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKML 195

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           L                  VLSACS +  +E GK  F
Sbjct: 196 L------------------VLSACSKLKDLEWGKHIF 214



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA--KCGCVVDAYFVFSGIEEKNVVLWNTM 308
           ++ Q KQ+H+   K G  S+    + ++      + G +  A+ VF  I   ++ +WNTM
Sbjct: 19  SMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTM 78

Query: 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368
           I G+S+ +     + ++  M  + + P+  T+   L   +    ++ GK   +  VK H 
Sbjct: 79  IKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVK-HG 137

Query: 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
              N+F     I +    G++  A+  + +M        W  +L+     +  +++++
Sbjct: 138 FDSNLFVQKAFIHMFSLCGIVDLAHK-VFDMGDACEVVTWNIMLSGYNRVKQFKISKM 194


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 319/564 (56%), Gaps = 46/564 (8%)

Query: 78  YSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT 137
           Y+  G I  +  +F +     +  +   I + + NG + +A  L++ +L     P +EFT
Sbjct: 74  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINP-NEFT 132

Query: 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
            SS+L +C+ K      K +H   LK  +  + +V T L+DVYAK G +  A +VF+ MP
Sbjct: 133 FSSLLKSCSTKSG----KLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 198 ER-------------------------------NEVTWSSMVAGFVQNELYEEALILFRR 226
           ER                               + V+W+ M+ G+ Q+    +AL+LF++
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 227 AQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285
               G  + ++ T+ + + AC+ + AL  G+ +H  +  +    N+   + L+DMY+KCG
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308

Query: 286 CVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQ-AGLHPNEQTYISVL 344
            + +A  VF+    K++V WN MI+G++ H  S + + LF +MQ   GL P + T+I  L
Sbjct: 309 SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTL 368

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
            AC+H G+V +G   F+ M +++ + P + HY C++ +LGRAG +  AY+ I NM  DA 
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428

Query: 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464
           + +W S+L SC+ + +  L +  A+ L G+   N+G ++LLSNIYA+   +E VA+ R L
Sbjct: 429 SVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNL 488

Query: 465 IRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHD 516
           +++  + KE   S +EI+        G R H +  EIY+ L K+ E +K  GY P T   
Sbjct: 489 MKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTV 548

Query: 517 LHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGR 576
           L D+E++ K++ L  HSE+LA+ +GL+   PG P++I KNLR+C DCH+  K  S+I GR
Sbjct: 549 LQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGR 608

Query: 577 ETIVRDLNRFHHFTNGSCSCWDFW 600
           + ++RD NRFHHFT+GSCSC DFW
Sbjct: 609 KIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 151/326 (46%), Gaps = 39/326 (11%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           S+  N  E  T  + L+SC+ +     GK+ H  ++  GL  D   +  L++ Y+K G +
Sbjct: 123 SSEINPNEF-TFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDV 177

Query: 85  SGARKVFDEMPQRC-------------------------------IVSWNTIIGSYTTNG 113
             A+KVFD MP+R                                IVSWN +I  Y  +G
Sbjct: 178 VSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHG 237

Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
              +A+ LF  +L EGK    E TV + L AC+    +   + +HVF   + +  NV V 
Sbjct: 238 FPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVC 297

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ-VLGL 232
           T L+D+Y+KCG + +A  VF   P ++ V W++M+AG+  +   ++AL LF   Q + GL
Sbjct: 298 TGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGL 357

Query: 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAY 291
           +    T    + ACA    + +G ++   + +  G    +     LV +  + G +  AY
Sbjct: 358 QPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAY 417

Query: 292 FVFSGIE-EKNVVLWNTMISGFSRHA 316
                +  + + VLW++++     H 
Sbjct: 418 ETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 41/300 (13%)

Query: 149 RDVFECKQLHVFALKAAM---DRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
           + V E  Q+H   L+  +    R   +   L   YA  G I  +  +F    + +   ++
Sbjct: 40  QSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 99

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           + +     N L ++A +L+ +     +  N+FT SS++ +C+  +    GK +H  + K 
Sbjct: 100 AAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKF 155

Query: 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE--------------------------- 298
           G G + + A+ LVD+YAK G VV A  VF  +                            
Sbjct: 156 GLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALF 215

Query: 299 ----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMV 353
               E+++V WN MI G+++H    + ++LF+K+   G   P+E T ++ LSACS IG +
Sbjct: 216 DSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGAL 275

Query: 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413
           E G+ +  + VK   +  NV   + +ID+  + G + EA  L+ N         W +++A
Sbjct: 276 ETGR-WIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAV-LVFNDTPRKDIVAWNAMIA 333


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 322/557 (57%), Gaps = 41/557 (7%)

Query: 66  NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINM 125
            D +   +LI+  +K G++   + +  + P R ++SW ++I +Y+   R +EAV  F  M
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230

Query: 126 LREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185
           L  G  P  E TV +VL ACA  +D+   + LH+   +  M  +  +  AL+D+YAKCG 
Sbjct: 231 LSHGIAP-DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGD 289

Query: 186 ISDASRVFESM-----PE---------------------------RNEVTWSSMVAGFVQ 213
              A +VF+++     P+                           R+ +T++SM+ G++ 
Sbjct: 290 FGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIH 349

Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
           +    EAL+LF   +   L  + FT+ +++ ACA L AL QG+ +HA + +    ++++ 
Sbjct: 350 SGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYL 409

Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
            ++L+DMY KCG V +A  VF  + +++V  W  MI+G + +      +  F +M+  G 
Sbjct: 410 GTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGF 469

Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
            PN  +YI+VL+ACSH  ++ +G+ YFD M   +N+ P + HY CMID+LGR+GL+ EA 
Sbjct: 470 QPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAM 529

Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
           DL+  MP    A +W S+L++CR +++++LA+ AA+ L  +EPD  G ++ L NIY  +R
Sbjct: 530 DLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSR 589

Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMK 505
           +WE  ++ R L+ + +VKK    S + + G+        ++HPRI EI + LE++   +K
Sbjct: 590 QWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLK 649

Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
            LGY P T     DV++  K++ L+ HSEKLA+ FGL+ L P +P+ I KNLR+C DCHS
Sbjct: 650 SLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHS 709

Query: 566 FMKFASRIAGRETIVRD 582
            +K  SR+  RE IVRD
Sbjct: 710 AIKLISRLWNREIIVRD 726



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 157/329 (47%), Gaps = 53/329 (16%)

Query: 30  ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG------- 82
           A +  T+ A L +CA+ +    G+  H  +   G+         LI+ Y+KCG       
Sbjct: 236 APDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQ 295

Query: 83  ----------------LISG---------ARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117
                           +I G         AR +FDEM  R I+++N+++  Y  +G+ +E
Sbjct: 296 VFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLRE 355

Query: 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177
           A+ LF++M R        FTV ++L ACA+   + + + LH    +  ++ ++++GTALL
Sbjct: 356 ALLLFMSM-RRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALL 414

Query: 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           D+Y KCG + +A+ VF+ M +R+  TW++M+AG   N + + AL  F + +  G + N  
Sbjct: 415 DMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSV 474

Query: 238 TISSVICACAGLAALIQGK----------QVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287
           +  +V+ AC+    L +G+           +H  +   G          ++D+  + G +
Sbjct: 475 SYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYG---------CMIDLLGRSGLL 525

Query: 288 VDAYFVFSGIE-EKNVVLWNTMISGFSRH 315
            +A  +   +  + N V+W +++S    H
Sbjct: 526 DEAMDLVKTMPIQPNAVIWASILSACRVH 554



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 170/374 (45%), Gaps = 71/374 (18%)

Query: 87  ARKVFDEMPQRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVL-CA 144
           A  +FD MP    + ++T + + +  G +      LF  M R G  P   FT   +  C+
Sbjct: 56  ALHLFDRMPPSTFL-FDTALRACSRAGSDPHRPFLLFRRMRRAGVRP-DGFTFHFLFKCS 113

Query: 145 CAAKR--DVFECKQLHVFALKAAMDRNV-FVGTALLDVYAKCGLISDASRVFESM----- 196
            ++ R   +  C  LH   L+  +     FV  +L+ +Y + GL +DA R F+ +     
Sbjct: 114 SSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDA 173

Query: 197 --------------------------PERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
                                     P R+ ++W+S++A + +     EA+  F+     
Sbjct: 174 VAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSH 233

Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG----- 285
           G+  ++ T+ +V+ ACA L  L  G+ +H ++ + G  ++     +L+DMYAKCG     
Sbjct: 234 GIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293

Query: 286 -----------------CVVDAY----------FVFSGIEEKNVVLWNTMISGFSRHARS 318
                             ++D Y           +F  +E ++++ +N+M++G+    + 
Sbjct: 294 QQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQL 353

Query: 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378
            E ++LF  M++  L  +  T +++L+AC+ +G +++G++     ++Q  V  +++  + 
Sbjct: 354 REALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRA-LHACIEQRLVEADIYLGTA 412

Query: 379 MIDILGRAGLIHEA 392
           ++D+  + G + EA
Sbjct: 413 LLDMYMKCGRVDEA 426


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/579 (35%), Positives = 337/579 (58%), Gaps = 11/579 (1%)

Query: 23   SASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCG 82
            +   +  A E++ L A +  C  E      K  H   +      + L +N  +  Y+KCG
Sbjct: 741  AGGEDVKADEVTILNA-VPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG 799

Query: 83   LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
             +S A++VF  +  + + SWN +IG +  +   + ++   + M   G  P S FTV S+L
Sbjct: 800  SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDS-FTVCSLL 858

Query: 143  CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
             AC+  + +   K++H F ++  ++R++FV  ++L +Y  CG +     +F++M +++ V
Sbjct: 859  SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLV 918

Query: 203  TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
            +W++++ G++QN   + AL +FR+  + G++    ++  V  AC+ L +L  G++ HA  
Sbjct: 919  SWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYA 978

Query: 263  CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
             K     + F A SL+DMYAK G +  +  VF+G++EK+   WN MI G+  H  + E +
Sbjct: 979  LKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAI 1038

Query: 323  ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
             LFE+MQ+ G +P++ T++ VL+AC+H G++ +G  Y D M     + PN+ HY+C+ID+
Sbjct: 1039 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDM 1098

Query: 383  LGRAGLIHEAYDLIL-NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
            LGRAG + +A  ++   M  +A   +W SLL+SCR ++NLE+ E  A +LF +EP+   N
Sbjct: 1099 LGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPEN 1158

Query: 442  HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEI 493
            ++LLSN+YA   +WE+V + R+ + +  ++K+   SW+E+         G+R      EI
Sbjct: 1159 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 1218

Query: 494  YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
             S    L  ++ K+GY+P+T    HD+ +  K E L  HSEKLALT+GL+    G  IR+
Sbjct: 1219 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 1278

Query: 554  MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
             KNLRIC DCH+  K  S++  RE +VRD  RFHHF NG
Sbjct: 1279 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 1317



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 159/337 (47%), Gaps = 15/337 (4%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIG-MGLNNDTLTSNILINFYSKCG 82
           +S++A       L   LQ+  + +    G+  H  + G   L ND +    +I  Y+ CG
Sbjct: 430 SSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCG 489

Query: 83  LISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL 142
               +R VFD +  + +  WN +I SY+ N    E +  FI M+         FT   V+
Sbjct: 490 SPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVI 549

Query: 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202
            ACA   DV     +H   +K  +  +VFVG AL+  Y   G ++DA ++F+ MPERN V
Sbjct: 550 KACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLV 609

Query: 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ--------FTISSVICACAGLAALIQ 254
           +W+SM+  F  N   EE+ +L        +E N          T+ +V+  CA    +  
Sbjct: 610 SWNSMIRVFSDNGFSEESFLLLGEM----MEENGDGAFMPDVATLVTVLPVCAREREIGL 665

Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
           GK VH    K      +   ++L+DMY+KCGC+ +A  +F     KNVV WNTM+ GFS 
Sbjct: 666 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 725

Query: 315 HARSVEVMILFEKMQQAG--LHPNEQTYISVLSACSH 349
              +     +  +M   G  +  +E T ++ +  C H
Sbjct: 726 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 762


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 329/572 (57%), Gaps = 13/572 (2%)

Query: 38  ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
           A L +C  E + ++GK  H  +I  GL  D      L++ Y KCG ++ AR VF  MP R
Sbjct: 214 AALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 98  CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
            +V+WN +IG Y  N R  EA   F+ M  EG       T  ++L ACA        + +
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEG-LQVEVVTAINLLAACAQTESSLYGRSV 332

Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
           H + ++     +V + TALL++Y K G +  + ++F  +  +  V+W++M+A ++  E+Y
Sbjct: 333 HGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMY 392

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
            EA+ LF       L  + FT+S+V+ A   L +L   +Q+H+ +   G+  N    +++
Sbjct: 393 TEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAV 452

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           + MYA+ G VV +  +F  +  K+V+ WNTMI G++ H +    + +F++M+  GL PNE
Sbjct: 453 LHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNE 512

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++SVL+ACS  G+V++G  +F+LM++++ ++P + HY CM D+LGR G + E    I 
Sbjct: 513 STFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIE 572

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
           +MP D T+ +WGSLL + RN  ++++AE AA+++F +E DN G +++LS++YA   RWE+
Sbjct: 573 SMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWED 632

Query: 458 VARARKLIRDSEVKKEKSKSWVEI--------KGKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           V R R L+++  +++ +  S VE+         G  +H +   I+   + L  ++K+   
Sbjct: 633 VERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKE--- 689

Query: 510 KPETEHDLHDVE-DSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568
             +T +  + V   +R   +   HS +LA+ FGL+    G PI + KN+RIC  CH  +K
Sbjct: 690 TDDTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALK 749

Query: 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
             SR +GR  +V D   +H F++GSC C D+W
Sbjct: 750 LISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 170/317 (53%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    ++ CAR      G+  H  +I +GL +D  T N L+ FY+K GL+  A +VFD M
Sbjct: 109 TFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGM 168

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
           P R IV+WN ++  Y +NG    A+A F  M    +  +    + + L AC  +    + 
Sbjct: 169 PVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQG 228

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H + ++  +++++ VGT+LLD+Y KCG ++ A  VF +MP R  VTW+ M+ G+  N
Sbjct: 229 KEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALN 288

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
           E  +EA   F + +  GL+    T  +++ ACA   + + G+ VH  + +  F  ++   
Sbjct: 289 ERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLE 348

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
           ++L++MY K G V  +  +F  I  K +V WN MI+ +       E + LF ++    L+
Sbjct: 349 TALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLY 408

Query: 335 PNEQTYISVLSACSHIG 351
           P+  T  +V+ A   +G
Sbjct: 409 PDYFTMSTVVPAFVLLG 425



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 164/313 (52%), Gaps = 4/313 (1%)

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFAL 162
           N +I  +   G    A+A +  ML +G  P   FT   V+  CA    + E +  H   +
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARP-DRFTFPVVVKCCARLGGLDEGRAAHGMVI 134

Query: 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222
           K  ++ +V+   +L+  YAK GL+ DA RVF+ MP R+ VTW+ MV G+V N L   AL 
Sbjct: 135 KLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALA 194

Query: 223 LFRRAQ-VLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281
            F+     L ++++   I + + AC    + +QGK++H  + + G   ++   +SL+DMY
Sbjct: 195 CFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMY 254

Query: 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341
            KCG V  A  VF+ +  + VV WN MI G++ + R  E    F +M+  GL     T I
Sbjct: 255 CKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAI 314

Query: 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF 401
           ++L+AC+       G+S    +V++   LP+V   + ++++ G+ G + E+ + I     
Sbjct: 315 NLLAACAQTESSLYGRSVHGYVVRRQ-FLPHVVLETALLEMYGKVGKV-ESSEKIFGKIA 372

Query: 402 DATASMWGSLLAS 414
           + T   W +++A+
Sbjct: 373 NKTLVSWNNMIAA 385



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 126/264 (47%), Gaps = 10/264 (3%)

Query: 26  ANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLIS 85
           A     E+ T    L +CA+  + + G+  H  ++        +    L+  Y K G + 
Sbjct: 303 AEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVE 362

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145
            + K+F ++  + +VSWN +I +Y       EA+ LF+ +L +   P   FT+S+V+ A 
Sbjct: 363 SSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYP-DYFTMSTVVPAF 421

Query: 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWS 205
                +  C+Q+H + +      N  +  A+L +YA+ G +  +  +F+ M  ++ ++W+
Sbjct: 422 VLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWN 481

Query: 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265
           +M+ G+  +   + AL +F   +  GL+ N+ T  SV+ AC+ ++ L+    +H  L   
Sbjct: 482 TMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS-VSGLVDEGWMHFNLMLQ 540

Query: 266 GFGSNMFAASSLVDMYAKCGCVVD 289
            +G        ++      GC+ D
Sbjct: 541 EYG--------MIPQIEHYGCMTD 556



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
           ++ SLV   A  G + +A    + +   +  L N MI GF+        +  +  M + G
Sbjct: 43  SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDG 102

Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK---QHNVLPNVFHYSC--MIDILGRAG 387
             P+  T+  V+  C+ +G +++G++   +++K   +H+V      Y+C  ++    + G
Sbjct: 103 ARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDV------YTCNSLVAFYAKLG 156

Query: 388 LIHEAYDLILNMP 400
           L+ +A  +   MP
Sbjct: 157 LVEDAERVFDGMP 169


>gi|115453917|ref|NP_001050559.1| Os03g0582100 [Oryza sativa Japonica Group]
 gi|113549030|dbj|BAF12473.1| Os03g0582100 [Oryza sativa Japonica Group]
          Length = 629

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 315/579 (54%), Gaps = 34/579 (5%)

Query: 36  LQATLQSCARERAPVR---GKVCHAKIIGMGL---NNDTLTSNILINFYSKCGLISGARK 89
           L+A   S +  R P     G   HA+ +  G    ++ T+ +  +++FY+ C     ARK
Sbjct: 71  LKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARK 130

Query: 90  VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
           VFD MP+R  V+WN +I  Y   GR +EA+ LF +M REG                A  R
Sbjct: 131 VFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSH-------------VAPDR 177

Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
             F        AL + + R    G  L+ +YA    + DA   F+ +   + + WSSM++
Sbjct: 178 YTFP-------ALLSGIGREGGSGRTLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMIS 230

Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
            +V  E  E AL++F       ++  QF  S+V   C  +  L  GKQVHA   K+    
Sbjct: 231 AYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEK 290

Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
           +    ++L+ MY+ CGC+ DA  VFS  +  NV+ +N+MIS   +H    E +  F +M+
Sbjct: 291 DAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMK 350

Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
            AGL P+E T ++++S+ +H G+V +G   F+ MV    + P   HY+C++D+L R+G I
Sbjct: 351 FAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEI 410

Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
            +A   I  MPF+A A +W  +L +C  +R++E  +  A+ LF MEP  A N++LL NIY
Sbjct: 411 GKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIY 470

Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLV 501
           A   RW E  + R L+ +  V K+ + SW+E+  +        R+HP   EIY  L++L+
Sbjct: 471 ARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLI 530

Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
             +K  GY P+     H+++  RK+E L +H EKLA  FG +    G  +RIMKNLR+CG
Sbjct: 531 STIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKNLRVCG 590

Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           DCH   K+ S + GRE I+RD  RFHHF +G CSC D+W
Sbjct: 591 DCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 629


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/548 (37%), Positives = 310/548 (56%), Gaps = 51/548 (9%)

Query: 102 WNTIIGSYT-----TNGREQEAVALFINMLREGKTPYSEF-TVSSVLCACAAKRDVFECK 155
           WNT+I ++        G     +++F+ M   G  P  +F T   +L + A+   +   +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQP--DFHTFPFLLQSFASPSLLHLGR 84

Query: 156 QLHVFALKAAMDRNVFVGTALLDVYAKCG------------------------------- 184
            +H   L+  +  + FV T+L+ +Y+ CG                               
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAG 144

Query: 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGL---EYNQFTISS 241
           L+  A  +F  MPERN ++WS M+ G+V+   Y+EAL LFR  Q+LG+     N+FT+S 
Sbjct: 145 LVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSG 204

Query: 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI-EEK 300
           V+ AC  L AL  GK  HA + K G   ++   ++L+DMYAKCG V  A +VFS +   K
Sbjct: 205 VLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNK 264

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           +V+ W+ MISG + H  + E + LF KM   G+ PN  T+++V  AC H G+V +GK Y 
Sbjct: 265 DVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYL 324

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
             M + ++++P + HY CM+D+ GRAG I EA++++ +MP +    +WG+LL+  R + +
Sbjct: 325 RRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGD 384

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           +E  E+A K+L  +EP N+G ++LLSN+YA   RWE+V   R L+    +KK    S +E
Sbjct: 385 IETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIE 444

Query: 481 IK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
           +         G  +HP   +I+  LE+++E +K  GY   T+  L D+++  K+  L  H
Sbjct: 445 VGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLH 504

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLAL +G +   PG PIRI+KNLRIC DCH  +K  S++  RE IVRD NRFHHFT G
Sbjct: 505 SEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQG 564

Query: 593 SCSCWDFW 600
            CSC D+W
Sbjct: 565 LCSCRDYW 572



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 171/369 (46%), Gaps = 39/369 (10%)

Query: 32  ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
           +  T    LQS A       G+  HA+I+  GL  D      LI+ YS CG +  AR+VF
Sbjct: 63  DFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVF 122

Query: 92  DE-------------------------------MPQRCIVSWNTIIGSYTTNGREQEAVA 120
           DE                               MP+R ++SW+ +I  Y   G+ +EA+A
Sbjct: 123 DEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALA 182

Query: 121 LF--INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178
           LF  + ML       +EFT+S VL AC     +   K  H +  K  M  +V +GTAL+D
Sbjct: 183 LFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALID 242

Query: 179 VYAKCGLISDASRVFESM-PERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF 237
           +YAKCG +  A+ VF ++ P ++ + WS+M++G   + L EE + LF +    G+  N  
Sbjct: 243 MYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAV 302

Query: 238 TISSVICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296
           T  +V CAC     + +GK     + +       +     +VD+Y + G + +A+ V   
Sbjct: 303 TFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKS 362

Query: 297 IE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVE 354
           +  E +V++W  ++SG   H       +  +K+ +  L P N   Y+ + +  +  G  E
Sbjct: 363 MPMEPDVLVWGALLSGSRMHGDIETCELALKKLIE--LEPTNSGAYVLLSNVYAKRGRWE 420

Query: 355 KGKSYFDLM 363
             +   DLM
Sbjct: 421 DVRHVRDLM 429



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 117/258 (45%), Gaps = 40/258 (15%)

Query: 195 SMPERNEVTWSSMVAGFVQNELYEEA-----LILFRRAQVLGLEYNQFTISSVICACAGL 249
           S P      W++++   VQ            + +F R +  G++ +  T   ++ + A  
Sbjct: 18  SHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASP 77

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG---------------------CVV 288
           + L  G+ VHA + + G   + F  +SL+ MY+ CG                      ++
Sbjct: 78  SLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSII 137

Query: 289 DAYF----------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH---P 335
           +A F          +F+ + E+NV+ W+ MI+G+ R  +  E + LF +MQ  G++   P
Sbjct: 138 NANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRP 197

Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
           NE T   VL+AC  +G +E GK +    + +  +  +V   + +ID+  + G + +A  +
Sbjct: 198 NEFTMSGVLAACGRLGALEHGK-WAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWV 256

Query: 396 ILNMPFDATASMWGSLLA 413
             N+  +     W ++++
Sbjct: 257 FSNLGPNKDVMAWSAMIS 274


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 310/550 (56%), Gaps = 40/550 (7%)

Query: 69  LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128
           + SN +I  +   GL+  A K+FDEM ++ +V+W+ +I  +  N   +EA+  F+ M + 
Sbjct: 176 IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKI 235

Query: 129 GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG---- 184
           G     E    S L ACA    V   K +H  +LK   +  + +  AL+ +Y+KCG    
Sbjct: 236 G-VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMV 294

Query: 185 ---------------------------LISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
                                      L+ +A  +F+SMPE++ V+WSSM++G+ QN+L+
Sbjct: 295 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 354

Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
           +E L LF+  Q+ G + ++ T+ SVI ACA LAAL QGK VHA + + G   N+   ++L
Sbjct: 355 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTL 414

Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337
           +DMY KCGCV  A  VF G+ EK +  WN +I G + +      + +F  M++  + PNE
Sbjct: 415 IDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 474

Query: 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397
            T++ VL AC H+G+V++G+ +F  M+  H + PNV HY CM+D+LGRAG + EA +L+ 
Sbjct: 475 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 534

Query: 398 NMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457
            MP     + WG+LL +C+ + + E+     ++L  ++PD+ G H+LLSNIYA+  +W++
Sbjct: 535 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDD 594

Query: 458 VARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEIYSKLEKLVEEMKKLGY 509
           V   R ++    V K    S +E        + G + HP +  I   L ++  ++K  GY
Sbjct: 595 VLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGY 654

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            P+    L DV++  K+  L  HSEKLA+ FGL+ + P  PIRIMKNLRIC DCH+  K 
Sbjct: 655 TPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKL 714

Query: 570 ASRIAGRETI 579
            S+   R+ +
Sbjct: 715 ISKAFCRKIV 724



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 206/428 (48%), Gaps = 73/428 (17%)

Query: 16  FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILI 75
           F+ +   S  +N    +  T    +Q+C+  R+    K  H  ++ +G ++D    N LI
Sbjct: 61  FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 120

Query: 76  NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE 135
           N +S C  ++ A +VF+E      VSWN+I+  Y   G  +EA  ++  M      P   
Sbjct: 121 NCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------P--- 171

Query: 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195
                                          +R++    +++ ++   GL+ +A ++F+ 
Sbjct: 172 -------------------------------ERSIIASNSMIVLFGMRGLVVEACKLFDE 200

Query: 196 MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255
           M E++ VTWS+++A F QNE+YEEA+  F     +G+  ++    S + ACA L  +  G
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260

Query: 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV-------DAYF---------------- 292
           K +H++  K G  S +   ++L+ MY+KCG ++       +AY                 
Sbjct: 261 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 320

Query: 293 --------VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344
                   +F  + EK+VV W++MISG++++    E + LF++MQ +G  P+E T +SV+
Sbjct: 321 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 380

Query: 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT 404
           SAC+ +  +E+GK +    +K++ +  NV   + +ID+  + G +  A ++   M  +  
Sbjct: 381 SACARLAALEQGK-WVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKG 438

Query: 405 ASMWGSLL 412
            S W +L+
Sbjct: 439 ISTWNALI 446



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 3/254 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D ++ N +I+ Y KC L+  A+ +FD MP++ +VSW+++I  Y  N    E +ALF  M 
Sbjct: 306 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 365

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
             G  P  E T+ SV+ ACA    + + K +H +  +  +  NV +GT L+D+Y KCG +
Sbjct: 366 MSGFKP-DETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCV 424

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
             A  VF  M E+   TW++++ G   N L E +L +F   +   +  N+ T   V+ AC
Sbjct: 425 ETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 484

Query: 247 AGLAALIQGK-QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-EKNVVL 304
             +  + +G+   ++++       N+     +VD+  + G + +A  + + +    +V  
Sbjct: 485 RHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVAT 544

Query: 305 WNTMISGFSRHARS 318
           W  ++    +H  S
Sbjct: 545 WGALLGACKKHGDS 558



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 50/344 (14%)

Query: 63  GLNNDTLTSNILINFYSKCGLI--SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVA 120
           G   +T  ++ LI F +    I     R++F+ +       WN +I +Y        A  
Sbjct: 5   GFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFT 64

Query: 121 LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180
           L+ +ML         +T   ++ AC+ +R  +E KQ+H   LK   D +V+V   L++ +
Sbjct: 65  LYKSML-SNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCF 123

Query: 181 AKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
           + C  ++DA RVF      + V+W+S++AG+++    EEA  +          Y+Q    
Sbjct: 124 SVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHI----------YHQMPER 173

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           S+I                             A++S++ ++   G VV+A  +F  + EK
Sbjct: 174 SII-----------------------------ASNSMIVLFGMRGLVVEACKLFDEMLEK 204

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           ++V W+ +I+ F ++    E +  F  M + G+  +E   +S LSAC+++ +V  GK   
Sbjct: 205 DMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIH 264

Query: 361 DLMVK----QHNVLPN--VFHYSCMIDILGRAGLIHEAY--DLI 396
            L +K     +  L N  ++ YS   DI+    L  EAY  DLI
Sbjct: 265 SLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 308



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 5/180 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           +TL + + +CAR  A  +GK  HA I   GL  + +    LI+ Y KCG +  A +VF  
Sbjct: 374 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 433

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M ++ I +WN +I     NG  + ++ +F NM +   TP +E T   VL AC     V E
Sbjct: 434 MIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP-NEITFMGVLGACRHMGLVDE 492

Query: 154 CKQLHVFAL--KAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWSSMVAG 210
             Q H +++     +  NV     ++D+  + G + +A  +   MP   +V TW +++  
Sbjct: 493 -GQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA 551


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/597 (34%), Positives = 327/597 (54%), Gaps = 16/597 (2%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
           S  +S + S+  NA   E    Q  L    R ++    K  HA I+ +GL  D+   + L
Sbjct: 14  SLPNSPLQSSELNAKFNE----QGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNL 69

Query: 75  IN--FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
           +     S+ G +  A  +F ++ +     +NT+I     +   +EA+ L++ ML  G  P
Sbjct: 70  VASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEP 129

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
              FT   VL AC+    + E  Q+H     A ++ +VFV   L+ +Y KCG I  A  V
Sbjct: 130 -DNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVV 188

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI-SSVICACAGLAA 251
           FE M E++  +WSS++      E++ E L+L       G    + +I  S + AC  L +
Sbjct: 189 FEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGS 248

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
              G+ +H +L +     N+   +SL+DMY KCG +     VF  +  KN   +  MI+G
Sbjct: 249 PNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAG 308

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            + H R  E + +F  M + GL P++  Y+ VLSACSH G+V++G   F+ M  +H + P
Sbjct: 309 LAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKP 368

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
            + HY CM+D++GRAG++ EAYDLI +MP      +W SLL++C+ + NLE+ EIAA  +
Sbjct: 369 TIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNI 428

Query: 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKG 483
           F +   N G++L+L+N+YA  ++W  VAR R  + +  + +    S VE        +  
Sbjct: 429 FKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQ 488

Query: 484 KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM 543
            ++ P+   IY  ++++  ++K  GY P+    L DV++  K++ L HHS+KLA+ F L+
Sbjct: 489 DKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALI 548

Query: 544 CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
               G P+RI +NLR+C DCH++ KF S I  RE  VRD NRFHHF +G+CSC D+W
Sbjct: 549 QTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/488 (40%), Positives = 293/488 (60%), Gaps = 13/488 (2%)

Query: 125 MLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC- 183
           ML   K P ++FT   VL ACA   ++   K +H   +K      V V   L+ +Y  C 
Sbjct: 1   MLERKKLP-NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCR 59

Query: 184 ---GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240
              G I  A +VF+ M + + V+WS+M+ G+V+     +A+ LFR  Q+ G+  ++ T+ 
Sbjct: 60  GGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMV 119

Query: 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
           SV+ AC GL AL  GK V + + K     N+  +++L+DM+AKCG V  A  +F  + E+
Sbjct: 120 SVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER 179

Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360
           N+V W ++I G + H R VE + +FE+M ++G+ P++  +I +LSACSH G+V+KGK YF
Sbjct: 180 NIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYF 239

Query: 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRN 420
           D M K  +++P + HY CM+D+L RAGL+ EA   +  MP D    +W +L+ +CR +  
Sbjct: 240 DSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGE 299

Query: 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE 480
           L+L E   +QL   EP +  N++LLSNIYA    WE+  R R+ +    +KK    + +E
Sbjct: 300 LKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIE 359

Query: 481 --------IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHH 532
                   + G ++H +  EIY  ++++ +EMK+ GY P T   L D++D  K++ L  H
Sbjct: 360 LDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRH 419

Query: 533 SEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNG 592
           SEKLA+ F L+   PG  IRI+KNLR+C DCHS  KF S+I  RE +VRD NRFHHF NG
Sbjct: 420 SEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNG 479

Query: 593 SCSCWDFW 600
            CSC DFW
Sbjct: 480 LCSCRDFW 487



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 139/288 (48%), Gaps = 7/288 (2%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKC----GLISGARKV 90
           T    L++CA       GK  H  ++  G  ++    N L++ Y  C    G I  ARKV
Sbjct: 12  TYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKV 71

Query: 91  FDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150
           FDEM +   VSW+ +IG Y   GR  +A+ LF  M  +G  P  E T+ SVL AC     
Sbjct: 72  FDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCP-DEITMVSVLSACTGLGA 130

Query: 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAG 210
           +   K +  +  K  + +NV +  AL+D++AKCG +  A+ +F SM ERN V+W+S++ G
Sbjct: 131 LELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGG 190

Query: 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT-GFGS 269
              +    EA+ +F      G+  +      ++ AC+    + +GK+    + K      
Sbjct: 191 LAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVP 250

Query: 270 NMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHA 316
            +     +VDM  + G V +A  FV     + N V+W T+I+    H 
Sbjct: 251 KIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 306/543 (56%), Gaps = 46/543 (8%)

Query: 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL----H 158
           + +I ++ ++GR Q A+ L+ +++R G  P +  T+ S+L + A    V   ++L    H
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLIRAGLFP-TPHTLPSLLKSLALSPAVPGARRLALAVH 115

Query: 159 VFALKAAMDRNVFVGTALLDVYA--------------------------------KCGLI 186
             A++  +   + V  AL+ V+A                                + G +
Sbjct: 116 AHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRV 175

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
           +DA  +F+ MPERN V+WS+MV G+VQ     EAL +F + Q  G+  +   +  V+ AC
Sbjct: 176 ADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAAC 235

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           A L AL QGK VH  L        +F  ++LVDMYAKCG V     VF G+++KNV+ W 
Sbjct: 236 AQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWT 295

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           TMI G + H R  + + LF +M+ +G+ P++  +I  L AC+H G+V+KG+  F+ MV  
Sbjct: 296 TMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNN 355

Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
           + + P + HY CM+D+L R GL+ EA D++  MP    A +WG+L+A CR ++N+ELAE 
Sbjct: 356 YGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEY 415

Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
             K    +EPD +G ++LL NIY+A+ R       R L+R+  V+K    S VEIK    
Sbjct: 416 VIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIH 475

Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMK-KLGYKPETEHDLHDVEDSRKQELLIHHSEKLA 537
               G  +HPRI +I +K  ++   ++ + GY P+ +  L D+E+   +  L  HSEKLA
Sbjct: 476 QFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLA 535

Query: 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCW 597
           + F L+     +PIRI+KNLR+C DCH   K  S++ GRE IVRD  RFH F +G+CSC 
Sbjct: 536 IAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCK 595

Query: 598 DFW 600
           D+W
Sbjct: 596 DYW 598



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 138/257 (53%), Gaps = 4/257 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D  T N LI  +++ G ++ AR +FDEMP+R  VSW+ ++  Y   G  +EA+ +F  M 
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
            +G  P  +  +  VL ACA    + + K +H +     +   VF+GTAL+D+YAKCG +
Sbjct: 218 AQGVRP-DDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEV 276

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
                VFE M ++N + W++M+ G   +    ++L LF + +  G++ +       +CAC
Sbjct: 277 QLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCAC 336

Query: 247 AGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-NVVL 304
                + +G+++ ++++   G    +     +VD+ A+ G + +A  +   +  K + ++
Sbjct: 337 THTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALI 396

Query: 305 WNTMISGFSRHARSVEV 321
           W  +++G   H ++VE+
Sbjct: 397 WGALMAGCRFH-KNVEL 412



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           + L   L +CA+  A  +GK  H  +    +         L++ Y+KCG +    +VF+ 
Sbjct: 226 TVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEG 285

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           M  + +++W T+I     +GR  +++ LF  M   G  P  +      LCAC     V +
Sbjct: 286 MKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKP-DDIAFIGALCACTHTGLVDK 344

Query: 154 CKQL-----HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE-VTWSSM 207
            ++L     + + +K  ++        ++D+ A+ GL+S+A  + E MP + + + W ++
Sbjct: 345 GRELFNSMVNNYGIKPKIEHY----GCMVDLLARNGLLSEARDMVEKMPMKPDALIWGAL 400

Query: 208 VAG 210
           +AG
Sbjct: 401 MAG 403


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/597 (35%), Positives = 326/597 (54%), Gaps = 16/597 (2%)

Query: 15  SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
           S  +S   S+  NA   E    Q  L    R ++    K  HA I+ +GL  D+   + L
Sbjct: 14  SLPNSPPQSSELNAKFNE----QGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNL 69

Query: 75  IN--FYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132
           +     S+ G +  A  +F ++ +     +NT+I     +   +EA+ L++ ML  G  P
Sbjct: 70  VASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEP 129

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192
              FT   VL AC+    + E  Q+H    KA ++ +VFV   L+ +Y KCG I  A  V
Sbjct: 130 -DNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVV 188

Query: 193 FESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI-SSVICACAGLAA 251
           FE M E++  +WSS++      E++ E L+L       G    + +I  S + AC  L +
Sbjct: 189 FEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGS 248

Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
              G+ +H +L +     N+   +SL+DMY KCG +     VF  +  KN   +  MI+G
Sbjct: 249 PNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAG 308

Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
            + H R  E + +F  M + GL P++  Y+ VLSACSH G+V +G   F+ M  +H + P
Sbjct: 309 LAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKP 368

Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431
            + HY CM+D++GRAG++ EAYDLI +MP      +W SLL++C+ + NLE+ EIAA+ +
Sbjct: 369 TIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENI 428

Query: 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKG 483
           F +   N G++L+L+N+YA  ++W  VAR R  + +  + +    S VE        +  
Sbjct: 429 FRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQ 488

Query: 484 KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM 543
            ++ P    IY  ++++  ++K  GY P+    L DV++  K++ L HHS+KLA+ F L+
Sbjct: 489 DKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALI 548

Query: 544 CLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
               G PIRI +NLR+C DCH++ KF S I  RE  VRD NRFHHF +G+CSC D+W
Sbjct: 549 QTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/590 (35%), Positives = 332/590 (56%), Gaps = 24/590 (4%)

Query: 28  ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF--YSKCGLIS 85
           ANA  + +L   LQ C   R   +    HA I+  G  ++   S  L+NF   S  G ++
Sbjct: 3   ANARAILSL---LQGCNSMRKLHK---IHAHILINGYQHNPSISEKLLNFCAVSVSGSLA 56

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGR--EQEAVALFINMLREGKTPYSEFTVSSVLC 143
            A+ VF  +      +WN++I  ++ +    + +A+  + +ML         +T S +L 
Sbjct: 57  YAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLK 116

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           AC   ++  +C+++H F ++   D++V + T L+  YA  GLI  A +VFE MP R+ V+
Sbjct: 117 ACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVS 176

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+SM++ + Q  L+EEAL ++ + ++  + ++ FT+ S++ +CA + AL  G Q+H    
Sbjct: 177 WNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAG 236

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +     N+F  ++L+DMYAKCG +  A  +F+ + +++V  WN+MI G+  H R  E + 
Sbjct: 237 ERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAIT 296

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
            F  M  AG+ PN  T++ +L  CSH G+V++G  YF +M  + N+ P + HY CM+D+ 
Sbjct: 297 FFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLF 356

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
           GRAG + EA ++I + P      +W +LL SC+ +RN+E+ E+A + L  +    AG+ +
Sbjct: 357 GRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCV 416

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLS IYA  +  + VAR RKLI+   +K     SW+E+  +        ++HP   EIY 
Sbjct: 417 LLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYR 476

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL-----LIHHSEKLALTFGLMCLCPGVP 550
           KLE+++     +GY  E E  L    +S  QE        +HSEKLA+ +GL     G  
Sbjct: 477 KLEEVIHRASLVGYAME-ESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTS 535

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + I+KNLR+C DCH+F KF S    RE IVRD  RFHHF  G CSC +FW
Sbjct: 536 LLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 156/299 (52%), Gaps = 4/299 (1%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           SA+    +  T    L++C   +   + +  H  II  G + D +    LI  Y+  GLI
Sbjct: 100 SASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLI 159

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             A KVF+EMP R +VSWN++I  Y   G  +EA+ ++ + +R     +  FT+ S+L +
Sbjct: 160 ETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMY-DQMRISNVGFDGFTLVSLLSS 218

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           CA    +    Q+H FA +  +  N+FVG AL+D+YAKCG ++ A  +F SMP+R+  TW
Sbjct: 219 CAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTW 278

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLC 263
           +SM+ G+  +   +EA+  F    + G+  N  T   ++C C+    + +G Q  H +  
Sbjct: 279 NSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSS 338

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVF-SGIEEKNVVLWNTMISGFSRHARSVEV 321
           +      +     +VD++ + G + +A  V  S   + + VLW T++     H R+VE+
Sbjct: 339 EFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIH-RNVEI 396


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/571 (35%), Positives = 322/571 (56%), Gaps = 50/571 (8%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
           L++ A  R+   G   H + I  GL+        L++ YS+CG ++ A+KVF+EM +  +
Sbjct: 113 LKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNV 172

Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
           V+WN ++ +    G  + A  +F  M      P+                          
Sbjct: 173 VAWNAVVTACFRCGDVKGADMMFNRM------PF-------------------------- 200

Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
                   RN+     +L  Y K G +  A ++F  MP +++V+WS+M+ GF  N  + E
Sbjct: 201 --------RNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYE 252

Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
           A   FR  Q +G+  N+ +++  + ACA   A+  GK +H  + K+GF   +   ++L+D
Sbjct: 253 AFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLD 312

Query: 280 MYAKCGCVVDAYFVFSGIEEK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
            Y+KCG V  A  VF  + EK ++V W +MI+G + H    E + LF +M+++G+ P+  
Sbjct: 313 TYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGI 372

Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
            +IS+L ACSH G++EKG  YF  M   +N+ P + HY CM+D+ GRAG + +AY+ I++
Sbjct: 373 AFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIH 432

Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
           MP   TA +W +LL +C  + N++LAE   ++L  ++P+N+G+H+LLSNIYA   +W++V
Sbjct: 433 MPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDV 492

Query: 459 ARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLG-Y 509
           A  R+ + D  + K    S +E+         G+  +    E Y KL++++ +++  G Y
Sbjct: 493 AAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCY 552

Query: 510 KPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569
            PE    LHD+ED  K++ +  HSEKLA+ FG+  LC G  IRI+KNLR+C DCH+ MK 
Sbjct: 553 IPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKL 612

Query: 570 ASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
            S++ G E +VRD +RFH F  GSCSC D+W
Sbjct: 613 ISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 15/264 (5%)

Query: 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL--DVYAKCGLISDAS 190
           +++   SS+L  C + +++   KQ+H +  K  +D +  +   LL     +    +  A 
Sbjct: 3   HTQHLCSSLLTNCRSLKNL---KQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYAR 59

Query: 191 RVFESMPERNEVTWSSMVAGFVQNELYEEALILF-RRAQVLGLEYNQFTISSVICACAGL 249
           R+F   P  +    ++++ G  +++  + +LI F    + L    + F+ + ++ A A  
Sbjct: 60  RLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASY 119

Query: 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMI 309
            +L  G Q+H      G  +++F  ++LV MY++CG V  A  VF  + E NVV WN ++
Sbjct: 120 RSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVV 179

Query: 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369
           +   R        ++F +M       N  ++  +L+  +  G +E  +  F  M  + +V
Sbjct: 180 TACFRCGDVKGADMMFNRMP----FRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDV 235

Query: 370 LPNVFHYSCMIDILGRAGLIHEAY 393
                 +S MI      G  +EA+
Sbjct: 236 -----SWSTMIVGFAHNGFFYEAF 254



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 12/183 (6%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           +L   L +CA   A   GK+ H  I   G       +N L++ YSKCG +  AR VF+ M
Sbjct: 271 SLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERM 330

Query: 95  PQ-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA-----AK 148
           P+ R IVSW ++I     +G  +EA+ LF  M   G  P       S+L AC+      K
Sbjct: 331 PEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRP-DGIAFISILYACSHAGLIEK 389

Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSM 207
              +  K   ++ ++ A++        ++D+Y + G +  A      MP     + W ++
Sbjct: 390 GYEYFYKMKDIYNIEPAIEHY----GCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTL 445

Query: 208 VAG 210
           +  
Sbjct: 446 LGA 448


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/604 (33%), Positives = 335/604 (55%), Gaps = 47/604 (7%)

Query: 40  LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF---YSKCGLISGARKVFDEMPQ 96
           LQ C+++      K  HA+++  GL  D+      ++F    +    +  A+ VFD   +
Sbjct: 21  LQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 97  RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
                WN +I  ++ +   + ++ L+  ML     P++ +T  S+L AC+      E  Q
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSS-APHNAYTFPSLLKACSNLSAFEETTQ 136

Query: 157 LHVFALKAAMDRNVFVGTALLDVYA-------------------------------KCGL 185
           +H    K   + +V+   +L++ YA                               K G 
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196

Query: 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245
           +  A  +F  M E+N ++W++M++G+VQ ++ +EAL LF   Q   +E +  ++++ + A
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256

Query: 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLW 305
           CA L AL QGK +H+ L KT    +      L+DMYAKCG + +A  VF  I++K+V  W
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW 316

Query: 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365
             +ISG++ H    E +  F +MQ+ G+ PN  T+ +VL+ACS+ G+VE+GK  F  M +
Sbjct: 317 TALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMER 376

Query: 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            +N+ P + HY C++D+LGRAGL+ EA   I  MP    A +WG+LL +CR ++N+EL E
Sbjct: 377 DYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGE 436

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--- 482
              + L  ++P + G ++  +NI+A +++W++ A  R+L+++  V K    S + ++   
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496

Query: 483 -----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIH-HSEKL 536
                G R+HP I +I SK   +  ++++ GY PE E  L D+ D  ++E ++H HSEKL
Sbjct: 497 HEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKL 556

Query: 537 ALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSC 596
           A+T+GL+   PG  IRIMKNLR+C DCH   K  S+I  R+ ++RD  RFHHF +G CSC
Sbjct: 557 AITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSC 616

Query: 597 WDFW 600
            D+W
Sbjct: 617 GDYW 620



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 147/324 (45%), Gaps = 35/324 (10%)

Query: 24  ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL 83
           +SA  NA    +L   L++C+   A       HA+I  +G  ND    N LIN Y+  G 
Sbjct: 109 SSAPHNAYTFPSL---LKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGN 165

Query: 84  ISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF------- 136
              A  +FD +P+   VSWN++I  Y   G+   A+ LF  M  +    ++         
Sbjct: 166 FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQA 225

Query: 137 -----------------------TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173
                                  ++++ L ACA    + + K +H +  K  +  +  +G
Sbjct: 226 DMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG 285

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
             L+D+YAKCG + +A  VF+++ +++   W+++++G+  +    EA+  F   Q +G++
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIK 345

Query: 234 YNQFTISSVICACAGLAALIQGKQV-HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA-Y 291
            N  T ++V+ AC+    + +GK + +++         +     +VD+  + G + +A  
Sbjct: 346 PNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKR 405

Query: 292 FVFSGIEEKNVVLWNTMISGFSRH 315
           F+     + N V+W  ++     H
Sbjct: 406 FIQEMPLKPNAVIWGALLKACRIH 429


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/590 (35%), Positives = 332/590 (56%), Gaps = 24/590 (4%)

Query: 28  ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF--YSKCGLIS 85
           ANA  + +L   LQ C   R   +    HA I+  G  ++   S  L+NF   S  G ++
Sbjct: 21  ANARAILSL---LQGCNSMRKLHK---IHAHILINGYQHNPSISEKLLNFCAVSVSGSLA 74

Query: 86  GARKVFDEMPQRCIVSWNTIIGSYTTNGR--EQEAVALFINMLREGKTPYSEFTVSSVLC 143
            A+ VF  +      +WN++I  ++ +    + +A+  + +ML         +T S +L 
Sbjct: 75  YAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLK 134

Query: 144 ACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT 203
           AC   ++  +C+++H F ++   D++V + T L+  YA  GLI  A +VFE MP R+ V+
Sbjct: 135 ACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVS 194

Query: 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263
           W+SM++ + Q  L+EEAL ++ + ++  + ++ FT+ S++ +CA + AL  G Q+H    
Sbjct: 195 WNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAG 254

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMI 323
           +     N+F  ++L+DMYAKCG +  A  +F+ + +++V  WN+MI G+  H R  E + 
Sbjct: 255 ERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAIT 314

Query: 324 LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383
            F  M  AG+ PN  T++ +L  CSH G+V++G  YF +M  + N+ P + HY CM+D+ 
Sbjct: 315 FFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLF 374

Query: 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443
           GRAG + EA ++I + P      +W +LL SC+ +RN+E+ E+A + L  +    AG+ +
Sbjct: 375 GRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCV 434

Query: 444 LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYS 495
           LLS IYA  +  + VAR RKLI+   +K     SW+E+  +        ++HP   EIY 
Sbjct: 435 LLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYR 494

Query: 496 KLEKLVEEMKKLGYKPETEHDLHDVEDSRKQEL-----LIHHSEKLALTFGLMCLCPGVP 550
           KLE+++     +GY  E E  L    +S  QE        +HSEKLA+ +GL     G  
Sbjct: 495 KLEEVIHRASLVGYAME-ESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTS 553

Query: 551 IRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
           + I+KNLR+C DCH+F KF S    RE IVRD  RFHHF  G CSC +FW
Sbjct: 554 LLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 156/299 (52%), Gaps = 4/299 (1%)

Query: 25  SANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI 84
           SA+    +  T    L++C   +   + +  H  II  G + D +    LI  Y+  GLI
Sbjct: 118 SASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLI 177

Query: 85  SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144
             A KVF+EMP R +VSWN++I  Y   G  +EA+ ++ + +R     +  FT+ S+L +
Sbjct: 178 ETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMY-DQMRISNVGFDGFTLVSLLSS 236

Query: 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTW 204
           CA    +    Q+H FA +  +  N+FVG AL+D+YAKCG ++ A  +F SMP+R+  TW
Sbjct: 237 CAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTW 296

Query: 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ-VHAVLC 263
           +SM+ G+  +   +EA+  F    + G+  N  T   ++C C+    + +G Q  H +  
Sbjct: 297 NSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSS 356

Query: 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVF-SGIEEKNVVLWNTMISGFSRHARSVEV 321
           +      +     +VD++ + G + +A  V  S   + + VLW T++     H R+VE+
Sbjct: 357 EFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIH-RNVEI 414


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 313/541 (57%), Gaps = 8/541 (1%)

Query: 67  DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
           D    N +++ Y + G +  A K+F +MP++ ++SW T+I     N R  EA+ LF NML
Sbjct: 158 DIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNML 217

Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
           R      S  T + V+ ACA         Q+H F +K+      +V  +L+ +YA C   
Sbjct: 218 RCCIKSTSR-TFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRT 276

Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
            D+ +VF  M       W+++++G+  N  +E+AL +F       +  NQ T +S + +C
Sbjct: 277 EDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSC 336

Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
           + L  L  GK++H V  K G G+  F  +SLV MY+  G V DA  VF  I +K++V WN
Sbjct: 337 SALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWN 396

Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
           ++I G ++H R     ++F +M +    P+E T+  +LSACSH G ++KG+  F  +   
Sbjct: 397 SIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSG 456

Query: 367 HN-VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAE 425
            N +   + HY+CM+DILGR G + EA  LI +M       +W +LL++CR + +++  E
Sbjct: 457 LNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGE 516

Query: 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKR 485
            AA  +F ++  ++  ++LLSNIYA+  RW  V++ R  ++   + K+   SWV I+GK+
Sbjct: 517 KAAAAIFNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKK 576

Query: 486 ------NHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
                 + P    I+ KLE L E++K+LGY P+    LHDVED +K+E+L +HSE+LA+ 
Sbjct: 577 HEFFSGDRPHCLRIFEKLEFLREKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIA 636

Query: 540 FGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
           FGL+    G  + +MKNLR+C DCH+ +K  SR+ G + ++RD  RFHHF NG CSC D+
Sbjct: 637 FGLINTVEGSTVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDY 696

Query: 600 W 600
           W
Sbjct: 697 W 697



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 182/375 (48%), Gaps = 13/375 (3%)

Query: 74  LINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPY 133
           +I+ Y++   +  A  +FDEMP R +VSWN++I      G    AV +F  M       +
Sbjct: 72  MISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSW 131

Query: 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193
           +             + +   C Q+ V        +++    A++  Y + G + DA ++F
Sbjct: 132 TAMVNGCFRFGMVDQAERLFC-QMPV--------KDIAAWNAMVHGYLQFGKVDDALKLF 182

Query: 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALI 253
           + MP +N ++W++M+ G  QNE   EAL LF+      ++    T + VI ACA   A  
Sbjct: 183 KQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAFH 242

Query: 254 QGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS 313
            G QVH  + K+GF    +  +SL+ +YA C    D+  VF  +  + V +W  ++SG+S
Sbjct: 243 MGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYS 302

Query: 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373
            + +  + + +F +M +  + PN+ T+ S L++CS +G ++ GK    + VK   +    
Sbjct: 303 LNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKL-GLGTVA 361

Query: 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433
           F  + ++ +   +G +++A  + + + F  +   W S++  C  +   + A +   Q+  
Sbjct: 362 FVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIR 420

Query: 434 M--EPDNAGNHLLLS 446
           +  EPD      LLS
Sbjct: 421 LNKEPDEITFTGLLS 435



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 149/325 (45%), Gaps = 37/325 (11%)

Query: 35  TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
           T    + +CA   A   G   H  II  G   +   +  LI  Y+ C     +RKVF EM
Sbjct: 227 TFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEM 286

Query: 95  PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
               +  W  ++  Y+ N + ++A+ +F  M+R    P ++ T +S L +C+A   +   
Sbjct: 287 VHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILP-NQSTFASGLNSCSALGTLDWG 345

Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
           K++H  A+K  +    FVG +L+ +Y+  G ++DA  VF  + +++ V+W+S++ G  Q+
Sbjct: 346 KEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQH 405

Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
              + A ++F +   L  E ++ T + ++ AC+    L +G+++                
Sbjct: 406 GRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLF--------------- 450

Query: 275 SSLVDMYAKCGCVVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
                           Y++ SG+   ++ +  +  M+    R     E   L E M    
Sbjct: 451 ----------------YYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMV--- 491

Query: 333 LHPNEQTYISVLSACSHIGMVEKGK 357
           + PNE  ++++LSAC     V++G+
Sbjct: 492 VKPNEMVWLALLSACRMHSDVDRGE 516



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 4/180 (2%)

Query: 34  STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
           ST  + L SC+       GK  H   + +GL       N L+  YS  G ++ A  VF E
Sbjct: 327 STFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIE 386

Query: 94  MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
           + ++ IVSWN+II     +GR + A  +F  M+R  K P  E T + +L AC+    + +
Sbjct: 387 IFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEP-DEITFTGLLSACSHCGFLQK 445

Query: 154 CKQLHVFALKAA--MDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAG 210
            ++L  +       +DR +   T ++D+  +CG + +A ++ ESM  + NE+ W ++++ 
Sbjct: 446 GRKLFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSA 505



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 97/192 (50%), Gaps = 8/192 (4%)

Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
           T ++  Y +   + DA  +F+ MP R+ V+W+SM++G V+    + A+ +F        E
Sbjct: 70  TKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMP----E 125

Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
            +  + ++++  C     + Q ++   + C+     ++ A +++V  Y + G V DA  +
Sbjct: 126 RSVVSWTAMVNGCFRFGMVDQAER---LFCQMPV-KDIAAWNAMVHGYLQFGKVDDALKL 181

Query: 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353
           F  +  KNV+ W TMI G  ++ RS E + LF+ M +  +    +T+  V++AC++    
Sbjct: 182 FKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAF 241

Query: 354 EKGKSYFDLMVK 365
             G      ++K
Sbjct: 242 HMGTQVHGFIIK 253



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348
           +A  VF  +   +V L+  MISG++R  R V+ + LF++M    +     ++ S++S C 
Sbjct: 53  EAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDV----VSWNSMISGCV 108

Query: 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMW 408
             G ++     FD M ++     +V  ++ M++   R G++ +A  L   MP    A+ W
Sbjct: 109 ECGDIDTAVKMFDEMPER-----SVVSWTAMVNGCFRFGMVDQAERLFCQMPVKDIAA-W 162

Query: 409 GSLLASCRNYRNLELAEIAAKQL 431
            +++     +  ++ A    KQ+
Sbjct: 163 NAMVHGYLQFGKVDDALKLFKQM 185


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.134    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,821,713,370
Number of Sequences: 23463169
Number of extensions: 349530771
Number of successful extensions: 1346304
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8054
Number of HSP's successfully gapped in prelim test: 3085
Number of HSP's that attempted gapping in prelim test: 1199658
Number of HSP's gapped (non-prelim): 52477
length of query: 600
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 451
effective length of database: 8,863,183,186
effective search space: 3997295616886
effective search space used: 3997295616886
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 80 (35.4 bits)