Query 007530
Match_columns 600
No_of_seqs 722 out of 4253
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 11:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-117 2E-122 967.2 66.9 572 28-600 118-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-113 6E-118 954.3 65.5 578 17-598 272-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1E-74 2.2E-79 645.1 46.6 560 18-592 71-676 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-62 2.6E-67 538.0 57.8 484 31-518 435-963 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.7E-62 3.8E-67 536.7 55.8 479 28-513 365-882 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-61 4.8E-66 525.7 44.5 486 96-594 84-582 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-27 5.4E-32 269.5 48.7 418 41-469 439-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-26 3.6E-31 262.7 50.3 428 29-466 461-898 (899)
9 PF14432 DYW_deaminase: DYW fa 99.9 4.7E-27 1E-31 189.2 7.0 102 475-590 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.1E-18 2.4E-23 200.2 49.9 411 41-466 277-738 (1157)
11 PRK11447 cellulose synthase su 99.9 2.2E-18 4.9E-23 197.7 50.2 451 45-512 159-746 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.2E-19 2.6E-24 177.2 30.1 419 36-467 51-484 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 2.2E-19 4.8E-24 175.4 30.4 388 66-465 114-516 (966)
14 PRK11788 tetratricopeptide rep 99.9 1.5E-19 3.2E-24 184.8 29.4 290 44-338 46-354 (389)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-17 3.9E-22 178.6 44.7 388 73-468 132-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 2.2E-18 4.8E-23 176.2 34.4 299 108-476 44-355 (389)
17 PRK10049 pgaA outer membrane p 99.8 1.4E-16 3E-21 174.9 48.4 402 29-439 11-461 (765)
18 PRK10049 pgaA outer membrane p 99.8 9.9E-17 2.1E-21 176.1 44.3 398 65-469 12-457 (765)
19 PRK15174 Vi polysaccharide exp 99.8 5.2E-17 1.1E-21 174.5 41.2 351 80-439 17-386 (656)
20 PRK09782 bacteriophage N4 rece 99.8 1.4E-15 3E-20 167.2 48.3 187 278-469 516-707 (987)
21 PRK14574 hmsH outer membrane p 99.8 7E-15 1.5E-19 158.5 47.6 432 28-469 31-514 (822)
22 PRK15174 Vi polysaccharide exp 99.8 4.7E-16 1E-20 167.2 38.4 312 78-399 52-378 (656)
23 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-15 6.9E-20 161.2 44.9 387 38-439 132-576 (615)
24 PRK09782 bacteriophage N4 rece 99.8 1.3E-14 2.8E-19 159.7 46.0 432 27-470 175-742 (987)
25 PRK14574 hmsH outer membrane p 99.7 3.1E-13 6.7E-18 146.0 45.0 387 78-468 44-479 (822)
26 KOG4422 Uncharacterized conser 99.7 1.2E-12 2.7E-17 123.5 37.2 390 35-433 118-589 (625)
27 KOG2002 TPR-containing nuclear 99.7 5E-13 1.1E-17 138.3 34.3 430 34-469 271-746 (1018)
28 KOG2002 TPR-containing nuclear 99.7 2E-12 4.3E-17 134.0 38.3 452 36-497 165-703 (1018)
29 KOG2003 TPR repeat-containing 99.6 4.6E-13 1E-17 127.0 25.2 411 38-455 206-710 (840)
30 KOG0495 HAT repeat protein [RN 99.6 6.9E-10 1.5E-14 110.5 43.8 370 100-482 517-892 (913)
31 KOG1915 Cell cycle control pro 99.6 1.8E-10 3.8E-15 110.5 37.9 414 79-503 84-536 (677)
32 PRK10747 putative protoheme IX 99.5 8.6E-12 1.9E-16 126.6 30.4 287 112-434 97-390 (398)
33 KOG0495 HAT repeat protein [RN 99.5 4.3E-10 9.3E-15 112.0 40.5 419 16-447 462-893 (913)
34 PF13429 TPR_15: Tetratricopep 99.5 2.1E-14 4.5E-19 139.2 10.4 254 208-466 15-275 (280)
35 KOG2076 RNA polymerase III tra 99.5 3.4E-11 7.4E-16 124.2 33.0 330 113-478 153-522 (895)
36 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.4E-15 110.7 33.1 350 98-465 163-533 (559)
37 TIGR00540 hemY_coli hemY prote 99.5 1.9E-11 4.1E-16 124.8 29.4 291 110-433 95-398 (409)
38 KOG4422 Uncharacterized conser 99.5 1.5E-10 3.3E-15 109.6 32.3 353 28-399 202-587 (625)
39 TIGR00540 hemY_coli hemY prote 99.5 2.4E-10 5.2E-15 116.7 34.4 286 147-466 96-397 (409)
40 PRK10747 putative protoheme IX 99.5 4.7E-11 1E-15 121.3 28.8 274 183-466 97-388 (398)
41 KOG1126 DNA-binding cell divis 99.5 8.5E-12 1.9E-16 124.7 22.1 243 216-467 334-585 (638)
42 KOG2076 RNA polymerase III tra 99.5 3.5E-09 7.6E-14 109.7 40.6 521 42-572 149-765 (895)
43 KOG1173 Anaphase-promoting com 99.4 2.4E-09 5.3E-14 105.3 36.9 421 34-466 17-516 (611)
44 PF13429 TPR_15: Tetratricopep 99.4 8.3E-13 1.8E-17 128.0 12.6 254 106-364 15-275 (280)
45 KOG1155 Anaphase-promoting com 99.4 3.2E-09 7E-14 101.9 35.5 324 134-467 163-494 (559)
46 KOG1915 Cell cycle control pro 99.4 5.5E-09 1.2E-13 100.5 36.4 376 32-414 106-549 (677)
47 KOG1126 DNA-binding cell divis 99.4 5.1E-11 1.1E-15 119.3 23.3 273 151-466 335-618 (638)
48 KOG0547 Translocase of outer m 99.4 1.6E-10 3.4E-15 111.3 24.9 213 248-466 338-564 (606)
49 KOG4318 Bicoid mRNA stability 99.4 1.5E-09 3.4E-14 111.7 32.5 226 14-251 6-286 (1088)
50 COG2956 Predicted N-acetylgluc 99.4 8.6E-10 1.9E-14 101.1 27.0 216 112-330 48-277 (389)
51 COG3071 HemY Uncharacterized e 99.4 2.1E-09 4.5E-14 101.7 30.5 286 112-433 97-389 (400)
52 KOG2003 TPR repeat-containing 99.4 1.1E-09 2.5E-14 104.3 27.0 392 70-468 203-689 (840)
53 KOG4318 Bicoid mRNA stability 99.3 3.2E-11 6.9E-16 123.8 17.5 264 222-517 11-275 (1088)
54 TIGR02521 type_IV_pilW type IV 99.3 5.3E-10 1.2E-14 105.1 23.1 197 270-467 30-231 (234)
55 PF13041 PPR_2: PPR repeat fam 99.3 8.9E-12 1.9E-16 85.0 6.8 50 300-349 1-50 (50)
56 PF13041 PPR_2: PPR repeat fam 99.3 9.3E-12 2E-16 84.9 6.8 50 199-248 1-50 (50)
57 KOG1840 Kinesin light chain [C 99.3 3.6E-09 7.8E-14 107.2 25.9 230 237-466 200-477 (508)
58 KOG1174 Anaphase-promoting com 99.2 1.5E-07 3.2E-12 89.4 33.4 367 69-441 98-507 (564)
59 COG3071 HemY Uncharacterized e 99.2 2.3E-08 4.9E-13 94.8 26.9 273 184-466 98-388 (400)
60 KOG2047 mRNA splicing factor [ 99.2 4E-06 8.8E-11 84.2 42.1 92 33-128 138-277 (835)
61 KOG0547 Translocase of outer m 99.2 1.2E-07 2.6E-12 91.9 30.4 218 211-435 336-567 (606)
62 KOG2376 Signal recognition par 99.2 2E-06 4.3E-11 85.7 38.7 405 40-465 19-517 (652)
63 COG2956 Predicted N-acetylgluc 99.2 4.2E-08 9.2E-13 90.2 25.2 292 148-475 48-354 (389)
64 TIGR02521 type_IV_pilW type IV 99.1 1.4E-08 3E-13 95.4 23.0 161 101-265 33-198 (234)
65 KOG1173 Anaphase-promoting com 99.1 3.4E-08 7.4E-13 97.4 25.7 257 101-363 246-515 (611)
66 PRK12370 invasion protein regu 99.1 2.5E-08 5.5E-13 105.9 26.7 174 186-365 320-501 (553)
67 KOG1840 Kinesin light chain [C 99.1 6.1E-08 1.3E-12 98.4 27.6 236 170-433 199-478 (508)
68 KOG2047 mRNA splicing factor [ 99.1 3.4E-06 7.4E-11 84.7 38.8 425 38-466 107-613 (835)
69 PRK12370 invasion protein regu 99.1 2.6E-08 5.7E-13 105.8 26.0 256 200-468 255-535 (553)
70 KOG4162 Predicted calmodulin-b 99.1 3.5E-07 7.5E-12 93.7 31.7 399 63-468 318-783 (799)
71 PRK11189 lipoprotein NlpI; Pro 99.0 4.7E-08 1E-12 95.1 21.2 211 250-469 40-266 (296)
72 KOG1129 TPR repeat-containing 99.0 2E-08 4.3E-13 92.3 16.7 230 205-469 227-459 (478)
73 KOG3785 Uncharacterized conser 99.0 2.3E-06 4.9E-11 79.9 28.2 411 40-469 29-491 (557)
74 PF12569 NARP1: NMDA receptor- 99.0 1.6E-05 3.4E-10 82.1 37.4 412 40-464 11-516 (517)
75 PRK11189 lipoprotein NlpI; Pro 98.9 5.8E-07 1.3E-11 87.4 25.0 148 113-263 40-192 (296)
76 KOG1156 N-terminal acetyltrans 98.9 3.4E-05 7.3E-10 78.0 37.1 436 35-482 10-487 (700)
77 COG3063 PilF Tfp pilus assembl 98.9 1.5E-07 3.2E-12 82.9 17.4 162 304-470 37-204 (250)
78 KOG1129 TPR repeat-containing 98.9 1E-07 2.3E-12 87.6 16.3 222 103-329 227-456 (478)
79 KOG4162 Predicted calmodulin-b 98.9 3.6E-05 7.8E-10 79.4 35.3 403 28-440 318-789 (799)
80 KOG1125 TPR repeat-containing 98.8 7.5E-08 1.6E-12 95.5 14.8 248 246-504 295-555 (579)
81 PF12569 NARP1: NMDA receptor- 98.8 2.9E-06 6.3E-11 87.5 26.7 122 307-433 199-333 (517)
82 KOG4340 Uncharacterized conser 98.8 3.4E-06 7.5E-11 76.9 23.6 275 184-466 126-441 (459)
83 KOG0548 Molecular co-chaperone 98.8 1.3E-05 2.7E-10 79.4 28.9 216 240-469 228-456 (539)
84 KOG3617 WD40 and TPR repeat-co 98.8 6.9E-06 1.5E-10 84.7 27.1 353 66-466 724-1107(1416)
85 PF04733 Coatomer_E: Coatomer 98.8 2.4E-07 5.2E-12 88.8 15.8 145 314-467 114-264 (290)
86 KOG0624 dsRNA-activated protei 98.8 2.2E-05 4.7E-10 73.2 27.5 190 248-440 167-376 (504)
87 KOG1174 Anaphase-promoting com 98.8 1.9E-05 4.1E-10 75.4 27.6 287 110-404 207-503 (564)
88 KOG3785 Uncharacterized conser 98.8 0.00011 2.4E-09 68.9 31.8 383 35-438 58-494 (557)
89 KOG1156 N-terminal acetyltrans 98.7 9E-05 1.9E-09 75.1 32.9 391 69-470 9-436 (700)
90 cd05804 StaR_like StaR_like; a 98.7 2.2E-05 4.8E-10 79.1 29.6 195 274-468 117-336 (355)
91 KOG1127 TPR repeat-containing 98.7 9E-06 2E-10 85.7 26.5 396 51-464 474-909 (1238)
92 PF04733 Coatomer_E: Coatomer 98.7 1.6E-06 3.5E-11 83.2 19.9 226 203-439 37-270 (290)
93 KOG0985 Vesicle coat protein c 98.7 0.00012 2.6E-09 77.5 33.9 240 200-465 1103-1367(1666)
94 PRK04841 transcriptional regul 98.7 0.00022 4.7E-09 81.6 40.0 367 70-468 343-760 (903)
95 KOG3616 Selective LIM binding 98.7 8.9E-05 1.9E-09 75.8 31.2 258 179-469 741-1025(1636)
96 cd05804 StaR_like StaR_like; a 98.7 8.1E-05 1.7E-09 75.0 32.1 194 102-297 9-212 (355)
97 KOG1070 rRNA processing protei 98.7 5.1E-06 1.1E-10 90.4 22.7 200 268-471 1455-1666(1710)
98 COG3063 PilF Tfp pilus assembl 98.7 1.1E-05 2.4E-10 71.3 20.9 201 203-438 37-240 (250)
99 PF12854 PPR_1: PPR repeat 98.6 6.4E-08 1.4E-12 59.2 4.2 33 165-197 2-34 (34)
100 KOG3616 Selective LIM binding 98.6 0.0001 2.2E-09 75.4 29.0 219 210-464 715-933 (1636)
101 PF12854 PPR_1: PPR repeat 98.6 6.8E-08 1.5E-12 59.0 4.0 33 63-95 2-34 (34)
102 KOG0548 Molecular co-chaperone 98.6 0.00019 4.2E-09 71.3 29.3 393 43-451 12-472 (539)
103 KOG0985 Vesicle coat protein c 98.6 0.00069 1.5E-08 72.0 34.5 355 32-424 983-1373(1666)
104 KOG2376 Signal recognition par 98.5 0.00042 9.2E-09 69.6 29.9 114 388-502 356-486 (652)
105 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3E-10 75.3 19.4 179 270-468 32-232 (235)
106 KOG3617 WD40 and TPR repeat-co 98.5 0.00068 1.5E-08 70.5 31.7 380 32-462 725-1168(1416)
107 KOG1127 TPR repeat-containing 98.5 0.00013 2.8E-09 77.4 26.8 421 35-466 494-994 (1238)
108 KOG4340 Uncharacterized conser 98.4 4E-05 8.8E-10 70.1 19.1 305 137-465 12-336 (459)
109 KOG1070 rRNA processing protei 98.4 6.7E-05 1.5E-09 82.1 23.8 235 122-359 1447-1693(1710)
110 PRK04841 transcriptional regul 98.4 0.00095 2.1E-08 76.4 35.5 220 77-296 383-637 (903)
111 PRK10370 formate-dependent nit 98.4 3E-05 6.6E-10 70.2 18.6 147 309-469 23-174 (198)
112 PRK15363 pathogenicity island 98.4 1.1E-05 2.3E-10 68.0 13.8 118 373-505 35-154 (157)
113 PRK15359 type III secretion sy 98.4 1.1E-05 2.3E-10 69.1 14.2 122 323-450 14-137 (144)
114 PRK15359 type III secretion sy 98.4 8.7E-06 1.9E-10 69.7 12.5 107 358-469 14-122 (144)
115 KOG1128 Uncharacterized conser 98.3 1.8E-05 3.8E-10 81.1 16.2 209 207-433 404-615 (777)
116 PLN02789 farnesyltranstransfer 98.3 0.00026 5.7E-09 69.0 23.3 163 287-452 88-268 (320)
117 KOG0624 dsRNA-activated protei 98.3 0.0032 6.8E-08 59.3 29.3 301 74-399 44-367 (504)
118 KOG1128 Uncharacterized conser 98.3 6.8E-05 1.5E-09 77.0 18.6 215 266-500 393-613 (777)
119 TIGR03302 OM_YfiO outer membra 98.3 8.2E-05 1.8E-09 70.0 18.0 182 234-436 31-234 (235)
120 KOG1125 TPR repeat-containing 98.2 5.6E-05 1.2E-09 75.6 17.0 245 211-460 295-563 (579)
121 PRK10370 formate-dependent nit 98.2 0.00014 3.1E-09 65.9 18.3 155 278-443 23-182 (198)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.1E-05 1.3E-09 74.8 16.8 119 104-228 174-295 (395)
123 PRK15179 Vi polysaccharide bio 98.2 0.00011 2.4E-09 78.9 20.0 139 300-443 84-226 (694)
124 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.2E-11 53.0 4.3 35 202-236 1-35 (35)
125 COG5010 TadD Flp pilus assembl 98.2 6.7E-05 1.5E-09 67.9 14.9 133 334-468 63-197 (257)
126 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.9E-11 52.7 4.4 34 303-336 1-34 (35)
127 PRK14720 transcript cleavage f 98.2 0.00061 1.3E-08 74.1 23.8 234 136-416 32-268 (906)
128 KOG1914 mRNA cleavage and poly 98.1 0.012 2.6E-07 59.0 32.2 389 65-467 17-500 (656)
129 COG4783 Putative Zn-dependent 98.1 0.00069 1.5E-08 66.9 21.7 117 348-466 317-435 (484)
130 PLN02789 farnesyltranstransfer 98.1 0.0015 3.2E-08 63.8 23.9 177 102-283 40-229 (320)
131 COG5010 TadD Flp pilus assembl 98.1 0.00023 5.1E-09 64.5 16.8 151 308-461 72-224 (257)
132 TIGR02552 LcrH_SycD type III s 98.1 5.2E-05 1.1E-09 64.3 12.2 97 373-469 17-115 (135)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8E-05 1.7E-09 74.0 14.3 122 340-466 172-295 (395)
134 PF13812 PPR_3: Pentatricopept 98.1 7.3E-06 1.6E-10 50.4 4.4 33 202-234 2-34 (34)
135 COG4783 Putative Zn-dependent 98.0 0.0016 3.5E-08 64.3 22.0 147 301-469 305-455 (484)
136 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 49.8 4.3 33 303-335 2-34 (34)
137 PRK14720 transcript cleavage f 98.0 0.0012 2.7E-08 71.8 22.2 240 26-313 23-268 (906)
138 PRK15179 Vi polysaccharide bio 98.0 0.0012 2.5E-08 71.2 21.9 129 98-229 85-216 (694)
139 KOG3081 Vesicle coat complex C 98.0 0.012 2.5E-07 53.8 24.4 175 258-439 95-276 (299)
140 TIGR02552 LcrH_SycD type III s 97.8 0.00064 1.4E-08 57.6 14.0 113 324-440 5-120 (135)
141 KOG2053 Mitochondrial inherita 97.8 0.066 1.4E-06 57.1 38.8 378 80-473 55-507 (932)
142 PF04840 Vps16_C: Vps16, C-ter 97.8 0.038 8.3E-07 53.8 29.3 109 274-399 180-288 (319)
143 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.7E-10 46.7 3.6 30 100-129 1-30 (31)
144 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.3E-10 46.8 3.4 31 202-232 1-31 (31)
145 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.5E-08 56.8 14.8 83 381-464 56-143 (145)
146 PF09976 TPR_21: Tetratricopep 97.8 0.0017 3.8E-08 55.7 15.6 122 102-226 15-143 (145)
147 KOG3081 Vesicle coat complex C 97.8 0.0081 1.7E-07 54.8 19.9 124 136-266 109-237 (299)
148 KOG1914 mRNA cleavage and poly 97.7 0.066 1.4E-06 53.9 34.5 432 28-465 15-536 (656)
149 cd00189 TPR Tetratricopeptide 97.7 0.00041 8.9E-09 53.9 10.2 92 376-467 3-96 (100)
150 KOG3060 Uncharacterized conser 97.7 0.032 6.9E-07 50.7 21.9 126 313-441 97-227 (289)
151 PF12895 Apc3: Anaphase-promot 97.7 5.6E-05 1.2E-09 58.0 4.2 57 407-464 27-83 (84)
152 PLN03088 SGT1, suppressor of 97.6 0.00082 1.8E-08 67.1 13.3 99 345-445 10-110 (356)
153 PF13414 TPR_11: TPR repeat; P 97.6 0.00013 2.8E-09 53.4 5.7 64 404-467 2-66 (69)
154 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00098 2.1E-08 54.8 11.7 99 342-440 7-111 (119)
155 KOG0553 TPR repeat-containing 97.6 0.0007 1.5E-08 62.7 10.6 103 347-452 91-196 (304)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.001 2.2E-08 54.8 10.7 95 375-469 4-106 (119)
157 PF13432 TPR_16: Tetratricopep 97.5 0.00028 6.1E-09 50.9 6.3 59 411-469 3-61 (65)
158 PRK10153 DNA-binding transcrip 97.5 0.006 1.3E-07 63.7 17.7 139 299-439 334-487 (517)
159 KOG2041 WD40 repeat protein [G 97.4 0.12 2.6E-06 53.6 25.1 74 176-259 828-901 (1189)
160 CHL00033 ycf3 photosystem I as 97.4 0.0017 3.8E-08 57.3 11.1 94 372-465 34-139 (168)
161 PRK02603 photosystem I assembl 97.4 0.002 4.2E-08 57.2 11.5 80 375-454 37-121 (172)
162 PF05843 Suf: Suppressor of fo 97.4 0.0062 1.4E-07 58.6 15.7 134 303-439 2-141 (280)
163 PRK15331 chaperone protein Sic 97.4 0.0053 1.2E-07 52.3 13.1 88 380-467 44-133 (165)
164 KOG3060 Uncharacterized conser 97.4 0.02 4.4E-07 51.9 17.1 159 307-469 57-221 (289)
165 KOG0553 TPR repeat-containing 97.4 0.0012 2.6E-08 61.2 9.5 87 382-468 90-178 (304)
166 PRK02603 photosystem I assembl 97.4 0.0064 1.4E-07 53.9 13.9 130 301-454 34-166 (172)
167 PF04840 Vps16_C: Vps16, C-ter 97.3 0.17 3.6E-06 49.4 24.5 111 338-465 178-288 (319)
168 PLN03088 SGT1, suppressor of 97.3 0.0044 9.5E-08 61.9 13.9 102 309-414 9-112 (356)
169 PF12895 Apc3: Anaphase-promot 97.3 0.0011 2.4E-08 50.7 7.4 80 315-398 2-83 (84)
170 KOG1538 Uncharacterized conser 97.3 0.075 1.6E-06 54.5 21.8 198 138-400 601-800 (1081)
171 cd00189 TPR Tetratricopeptide 97.3 0.0022 4.8E-08 49.6 9.3 91 102-195 3-93 (100)
172 COG4700 Uncharacterized protei 97.3 0.0057 1.2E-07 52.5 11.6 124 334-460 86-214 (251)
173 PF14559 TPR_19: Tetratricopep 97.2 0.00082 1.8E-08 48.9 5.8 53 416-468 2-54 (68)
174 PF08579 RPM2: Mitochondrial r 97.2 0.007 1.5E-07 47.6 10.8 81 203-283 27-116 (120)
175 PRK15363 pathogenicity island 97.2 0.0083 1.8E-07 50.9 12.1 95 98-195 34-128 (157)
176 CHL00033 ycf3 photosystem I as 97.2 0.022 4.8E-07 50.2 15.7 110 302-438 35-153 (168)
177 PF10037 MRP-S27: Mitochondria 97.2 0.0063 1.4E-07 61.0 13.3 119 131-249 62-186 (429)
178 COG4235 Cytochrome c biogenesi 97.2 0.015 3.2E-07 54.5 14.6 101 370-470 153-258 (287)
179 PRK10866 outer membrane biogen 97.2 0.097 2.1E-06 49.1 20.4 57 342-398 180-237 (243)
180 PF13371 TPR_9: Tetratricopept 97.2 0.0012 2.6E-08 48.9 6.2 57 413-469 3-59 (73)
181 PF14938 SNAP: Soluble NSF att 97.2 0.027 5.9E-07 54.4 17.1 21 207-227 41-61 (282)
182 KOG2280 Vacuolar assembly/sort 97.2 0.44 9.6E-06 50.1 28.1 110 273-398 686-795 (829)
183 PF13432 TPR_16: Tetratricopep 97.1 0.0011 2.3E-08 47.8 5.4 61 379-439 3-65 (65)
184 PF05843 Suf: Suppressor of fo 97.1 0.0073 1.6E-07 58.1 12.6 128 100-230 2-136 (280)
185 PF08579 RPM2: Mitochondrial r 97.1 0.013 2.8E-07 46.1 11.2 81 304-385 27-116 (120)
186 KOG0550 Molecular chaperone (D 97.1 0.021 4.6E-07 55.4 14.7 161 303-469 169-351 (486)
187 PF14938 SNAP: Soluble NSF att 97.1 0.061 1.3E-06 52.0 18.5 97 304-400 157-264 (282)
188 PF06239 ECSIT: Evolutionarily 97.1 0.0063 1.4E-07 54.1 10.3 97 291-388 34-153 (228)
189 COG4700 Uncharacterized protei 97.0 0.098 2.1E-06 45.2 16.8 140 365-506 81-225 (251)
190 PF10037 MRP-S27: Mitochondria 97.0 0.013 2.7E-07 58.9 13.5 120 231-350 61-186 (429)
191 KOG1130 Predicted G-alpha GTPa 97.0 0.0041 8.8E-08 60.0 9.0 129 338-466 196-342 (639)
192 PF06239 ECSIT: Evolutionarily 97.0 0.027 5.8E-07 50.2 13.4 105 233-352 44-153 (228)
193 PRK10866 outer membrane biogen 97.0 0.33 7.1E-06 45.6 22.8 54 378-431 180-238 (243)
194 PF14559 TPR_19: Tetratricopep 97.0 0.0011 2.4E-08 48.3 4.1 59 349-409 3-62 (68)
195 PF13431 TPR_17: Tetratricopep 96.9 0.00066 1.4E-08 41.3 2.3 32 428-459 2-33 (34)
196 PF12688 TPR_5: Tetratrico pep 96.8 0.039 8.6E-07 45.0 12.4 91 207-297 7-101 (120)
197 PRK10153 DNA-binding transcrip 96.7 0.12 2.6E-06 54.3 18.2 60 337-399 420-479 (517)
198 PF12688 TPR_5: Tetratrico pep 96.6 0.059 1.3E-06 44.0 12.1 90 106-196 8-101 (120)
199 KOG2796 Uncharacterized conser 96.6 0.15 3.2E-06 46.7 15.5 167 173-341 139-323 (366)
200 PF07079 DUF1347: Protein of u 96.6 0.85 1.9E-05 45.3 34.9 408 45-466 18-522 (549)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0091 2E-07 59.4 8.7 65 404-468 74-141 (453)
202 KOG1538 Uncharacterized conser 96.6 0.2 4.3E-06 51.6 17.9 212 217-466 616-844 (1081)
203 PF13414 TPR_11: TPR repeat; P 96.6 0.0046 1E-07 45.1 5.1 64 373-436 3-69 (69)
204 PRK10803 tol-pal system protei 96.6 0.019 4E-07 54.4 10.2 92 376-467 146-245 (263)
205 COG3898 Uncharacterized membra 96.6 0.85 1.8E-05 44.4 26.2 209 248-467 166-391 (531)
206 KOG2796 Uncharacterized conser 96.5 0.26 5.6E-06 45.2 16.4 135 303-437 178-318 (366)
207 PF13525 YfiO: Outer membrane 96.5 0.6 1.3E-05 42.5 21.3 180 205-393 9-198 (203)
208 PF09205 DUF1955: Domain of un 96.5 0.26 5.6E-06 40.1 14.3 140 313-471 13-152 (161)
209 PF13281 DUF4071: Domain of un 96.5 0.3 6.4E-06 48.3 17.9 158 277-437 147-337 (374)
210 PF13428 TPR_14: Tetratricopep 96.5 0.0046 9.9E-08 40.3 3.8 42 406-447 2-43 (44)
211 PRK10803 tol-pal system protei 96.2 0.15 3.2E-06 48.3 13.9 92 348-439 154-251 (263)
212 COG3898 Uncharacterized membra 96.1 1.5 3.1E-05 42.9 26.4 301 83-399 68-389 (531)
213 PF13371 TPR_9: Tetratricopept 96.1 0.02 4.2E-07 42.2 6.3 62 381-442 3-66 (73)
214 KOG0543 FKBP-type peptidyl-pro 96.1 0.089 1.9E-06 51.3 11.9 65 405-469 257-321 (397)
215 KOG1130 Predicted G-alpha GTPa 96.1 0.07 1.5E-06 51.8 10.8 254 109-364 27-342 (639)
216 PF03704 BTAD: Bacterial trans 96.0 0.019 4.1E-07 49.3 6.5 60 407-466 64-123 (146)
217 PF13525 YfiO: Outer membrane 96.0 0.26 5.6E-06 44.9 14.2 163 178-357 13-198 (203)
218 PF12921 ATP13: Mitochondrial 96.0 0.11 2.4E-06 42.8 10.5 49 333-381 48-96 (126)
219 PF12921 ATP13: Mitochondrial 95.9 0.081 1.8E-06 43.7 9.3 82 337-418 2-101 (126)
220 KOG0550 Molecular chaperone (D 95.9 2 4.4E-05 42.2 21.1 85 312-399 259-347 (486)
221 COG4235 Cytochrome c biogenesi 95.7 0.14 3.1E-06 48.0 11.2 99 131-230 152-256 (287)
222 KOG3941 Intermediate in Toll s 95.5 0.13 2.8E-06 47.5 9.7 102 288-390 51-175 (406)
223 PF13424 TPR_12: Tetratricopep 95.5 0.021 4.5E-07 42.8 4.1 60 407-466 7-73 (78)
224 PF13424 TPR_12: Tetratricopep 95.3 0.031 6.7E-07 41.8 4.7 28 406-433 47-74 (78)
225 PF04184 ST7: ST7 protein; In 95.3 2.2 4.7E-05 43.3 18.2 52 212-266 179-230 (539)
226 PF04184 ST7: ST7 protein; In 95.2 0.92 2E-05 45.8 15.4 187 314-512 180-381 (539)
227 KOG0543 FKBP-type peptidyl-pro 95.0 0.35 7.6E-06 47.4 11.6 93 375-467 259-354 (397)
228 COG1729 Uncharacterized protei 95.0 0.18 4E-06 46.8 9.3 64 403-468 178-244 (262)
229 KOG1258 mRNA processing protei 95.0 5.4 0.00012 41.4 30.9 380 67-453 44-489 (577)
230 COG0457 NrfG FOG: TPR repeat [ 94.9 2.9 6.3E-05 38.1 27.4 196 271-468 59-265 (291)
231 KOG2053 Mitochondrial inherita 94.9 7.1 0.00015 42.5 34.0 121 81-206 22-150 (932)
232 KOG2066 Vacuolar assembly/sort 94.9 6.7 0.00015 42.0 25.0 166 41-228 364-532 (846)
233 PF04053 Coatomer_WDAD: Coatom 94.8 1.4 3E-05 45.3 16.0 158 211-400 271-429 (443)
234 PF04053 Coatomer_WDAD: Coatom 94.8 2.4 5.2E-05 43.6 17.6 155 108-295 270-426 (443)
235 PF10300 DUF3808: Protein of u 94.7 6.3 0.00014 41.1 23.6 156 105-263 194-374 (468)
236 PF03704 BTAD: Bacterial trans 94.7 0.18 4E-06 43.1 8.3 71 101-173 64-139 (146)
237 KOG2041 WD40 repeat protein [G 94.6 7.2 0.00016 41.2 27.9 231 65-330 689-951 (1189)
238 PF13281 DUF4071: Domain of un 94.6 4.1 8.9E-05 40.4 17.9 72 175-246 146-227 (374)
239 COG5107 RNA14 Pre-mRNA 3'-end 94.4 6 0.00013 39.6 29.9 91 54-149 30-123 (660)
240 smart00299 CLH Clathrin heavy 94.4 2.5 5.5E-05 35.6 14.6 84 140-227 12-95 (140)
241 smart00299 CLH Clathrin heavy 94.3 2.4 5.2E-05 35.8 14.3 86 36-125 10-95 (140)
242 PF13512 TPR_18: Tetratricopep 94.3 1 2.2E-05 37.7 11.2 57 384-440 21-82 (142)
243 KOG1585 Protein required for f 94.2 4.3 9.3E-05 37.1 16.3 87 375-462 152-250 (308)
244 KOG2280 Vacuolar assembly/sort 94.2 9.2 0.0002 40.9 32.9 325 103-462 441-793 (829)
245 KOG4555 TPR repeat-containing 94.2 0.49 1.1E-05 38.4 8.7 88 382-469 52-145 (175)
246 PF00515 TPR_1: Tetratricopept 93.8 0.093 2E-06 31.7 3.3 32 406-437 2-33 (34)
247 PRK11906 transcriptional regul 93.7 5.5 0.00012 40.3 17.1 156 303-461 252-429 (458)
248 KOG1920 IkappaB kinase complex 93.6 11 0.00025 42.4 20.4 157 184-399 894-1052(1265)
249 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 0.5 1.1E-05 47.4 9.6 62 373-434 75-141 (453)
250 COG3118 Thioredoxin domain-con 93.5 2.8 6.1E-05 39.5 13.8 121 346-469 143-266 (304)
251 PRK15331 chaperone protein Sic 93.5 0.59 1.3E-05 40.1 8.7 80 81-162 50-132 (165)
252 PF07719 TPR_2: Tetratricopept 93.5 0.16 3.4E-06 30.5 4.0 32 407-438 3-34 (34)
253 PF13512 TPR_18: Tetratricopep 93.3 3.1 6.7E-05 34.9 12.4 112 311-439 19-133 (142)
254 KOG3941 Intermediate in Toll s 93.1 0.92 2E-05 42.1 9.7 98 189-286 53-173 (406)
255 PRK11906 transcriptional regul 93.0 2.3 5E-05 42.9 13.2 117 352-468 273-401 (458)
256 COG0457 NrfG FOG: TPR repeat [ 93.0 6.8 0.00015 35.5 25.4 192 242-437 65-268 (291)
257 KOG1941 Acetylcholine receptor 93.0 2.2 4.7E-05 41.3 12.3 48 211-258 16-65 (518)
258 PF08631 SPO22: Meiosis protei 93.0 9 0.0002 36.8 23.0 17 147-163 5-21 (278)
259 PF02259 FAT: FAT domain; Int 93.0 11 0.00023 37.6 20.5 150 300-451 144-304 (352)
260 COG1729 Uncharacterized protei 92.9 1.1 2.3E-05 41.8 10.1 93 304-399 144-241 (262)
261 PF10300 DUF3808: Protein of u 92.9 7.4 0.00016 40.6 17.6 160 305-467 191-375 (468)
262 COG5107 RNA14 Pre-mRNA 3'-end 92.7 12 0.00026 37.5 19.9 124 271-399 397-528 (660)
263 KOG4555 TPR repeat-containing 92.6 1.6 3.5E-05 35.6 9.3 53 110-164 54-106 (175)
264 PF13170 DUF4003: Protein of u 92.5 11 0.00023 36.5 17.6 134 217-380 78-224 (297)
265 KOG2610 Uncharacterized conser 92.4 1.9 4.2E-05 41.1 11.1 159 314-475 115-283 (491)
266 KOG4234 TPR repeat-containing 92.3 0.97 2.1E-05 39.8 8.3 87 383-469 105-198 (271)
267 PRK11619 lytic murein transgly 92.1 21 0.00045 38.9 32.3 116 315-433 254-374 (644)
268 COG4105 ComL DNA uptake lipopr 92.1 10 0.00022 35.2 20.4 157 309-466 41-231 (254)
269 PF09205 DUF1955: Domain of un 91.6 6.7 0.00014 32.2 13.1 65 203-268 88-152 (161)
270 COG3118 Thioredoxin domain-con 91.3 14 0.0003 35.1 16.6 146 310-457 142-290 (304)
271 KOG2610 Uncharacterized conser 91.1 6.8 0.00015 37.6 13.0 175 283-462 115-309 (491)
272 PF13428 TPR_14: Tetratricopep 90.8 0.78 1.7E-05 29.6 5.0 28 101-128 3-30 (44)
273 COG3629 DnrI DNA-binding trans 90.5 1.8 3.8E-05 41.0 8.9 76 170-245 153-236 (280)
274 PF07079 DUF1347: Protein of u 90.3 22 0.00048 35.9 32.1 352 38-410 133-530 (549)
275 PF07035 Mic1: Colon cancer-as 89.9 11 0.00023 32.8 12.5 136 17-164 13-149 (167)
276 PF09613 HrpB1_HrpK: Bacterial 89.9 12 0.00026 32.2 13.2 89 347-437 20-109 (160)
277 KOG2114 Vacuolar assembly/sort 89.8 34 0.00074 37.3 25.8 174 71-261 337-515 (933)
278 COG4105 ComL DNA uptake lipopr 89.7 17 0.00037 33.8 21.2 63 203-265 36-100 (254)
279 PF13170 DUF4003: Protein of u 89.6 5.4 0.00012 38.6 11.7 63 116-179 79-150 (297)
280 KOG1585 Protein required for f 89.2 18 0.00039 33.3 15.6 23 204-226 94-116 (308)
281 COG4785 NlpI Lipoprotein NlpI, 89.1 17 0.00036 32.9 13.8 161 302-469 99-267 (297)
282 KOG1464 COP9 signalosome, subu 89.0 17 0.00037 33.8 13.6 166 62-228 20-218 (440)
283 COG3629 DnrI DNA-binding trans 89.0 2.1 4.5E-05 40.6 8.1 62 406-467 154-215 (280)
284 PF13181 TPR_8: Tetratricopept 89.0 0.53 1.2E-05 28.2 2.9 31 407-437 3-33 (34)
285 KOG1941 Acetylcholine receptor 88.8 19 0.00042 35.1 14.2 126 308-433 128-274 (518)
286 PF13176 TPR_7: Tetratricopept 88.7 1.1 2.4E-05 27.4 4.2 26 203-228 1-26 (36)
287 PRK09687 putative lyase; Provi 88.6 24 0.00052 33.9 27.3 73 270-347 205-277 (280)
288 PF09613 HrpB1_HrpK: Bacterial 88.5 2.9 6.3E-05 35.8 7.9 54 416-469 21-74 (160)
289 PF13176 TPR_7: Tetratricopept 88.5 0.92 2E-05 27.8 3.8 26 101-126 1-26 (36)
290 TIGR02561 HrpB1_HrpK type III 88.5 2.9 6.2E-05 35.2 7.6 53 417-469 22-74 (153)
291 PF02259 FAT: FAT domain; Int 88.4 23 0.00049 35.3 16.1 65 403-467 144-212 (352)
292 COG1747 Uncharacterized N-term 87.8 35 0.00077 35.0 16.7 158 101-266 68-235 (711)
293 PF13431 TPR_17: Tetratricopep 87.2 1.1 2.5E-05 27.0 3.5 30 160-190 4-33 (34)
294 PF10602 RPN7: 26S proteasome 85.3 7.8 0.00017 34.3 9.3 59 171-229 37-101 (177)
295 PF10602 RPN7: 26S proteasome 85.3 26 0.00056 31.0 12.7 94 304-399 38-139 (177)
296 COG4649 Uncharacterized protei 85.1 8.2 0.00018 33.4 8.6 19 211-229 104-122 (221)
297 PF00515 TPR_1: Tetratricopept 84.9 2.4 5.1E-05 25.3 4.2 27 304-330 3-29 (34)
298 PF02284 COX5A: Cytochrome c o 84.7 7.1 0.00015 30.4 7.4 60 320-381 28-87 (108)
299 PF00637 Clathrin: Region in C 84.6 0.8 1.7E-05 38.9 2.8 85 39-126 13-97 (143)
300 KOG2114 Vacuolar assembly/sort 84.6 68 0.0015 35.2 24.1 165 15-199 348-519 (933)
301 PF14853 Fis1_TPR_C: Fis1 C-te 84.4 7.3 0.00016 26.4 6.6 50 442-509 4-53 (53)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 8.7 0.00019 29.6 7.6 63 317-381 22-84 (103)
303 PRK12798 chemotaxis protein; R 84.1 50 0.0011 33.2 21.5 182 284-468 125-324 (421)
304 PF00637 Clathrin: Region in C 83.8 0.59 1.3E-05 39.7 1.6 84 141-227 13-96 (143)
305 PF07721 TPR_4: Tetratricopept 83.4 1.7 3.7E-05 24.3 2.8 24 440-463 2-25 (26)
306 TIGR02561 HrpB1_HrpK type III 82.9 28 0.0006 29.5 10.7 64 45-110 22-87 (153)
307 PF07035 Mic1: Colon cancer-as 82.7 32 0.00069 30.0 15.1 37 323-359 15-51 (167)
308 TIGR02508 type_III_yscG type I 82.6 21 0.00045 27.8 9.8 63 175-240 44-106 (115)
309 KOG4648 Uncharacterized conser 81.8 2.7 5.9E-05 40.2 5.1 111 345-462 105-218 (536)
310 PF07719 TPR_2: Tetratricopept 81.8 2.5 5.4E-05 25.0 3.4 29 440-468 2-30 (34)
311 PF11207 DUF2989: Protein of u 81.7 12 0.00026 33.4 8.8 73 116-190 123-198 (203)
312 PRK11619 lytic murein transgly 81.7 86 0.0019 34.3 35.3 93 381-473 415-510 (644)
313 PF13374 TPR_10: Tetratricopep 81.3 3.3 7.2E-05 25.9 4.1 23 409-431 6-28 (42)
314 KOG3364 Membrane protein invol 81.3 9.3 0.0002 31.6 7.2 74 419-510 49-124 (149)
315 KOG4570 Uncharacterized conser 80.8 15 0.00033 35.0 9.5 98 165-266 59-165 (418)
316 PF08631 SPO22: Meiosis protei 79.5 60 0.0013 31.1 21.8 61 304-366 86-150 (278)
317 KOG4570 Uncharacterized conser 79.2 13 0.00027 35.6 8.4 101 62-165 58-165 (418)
318 TIGR02508 type_III_yscG type I 79.1 28 0.00061 27.1 8.9 78 49-129 21-98 (115)
319 PF06552 TOM20_plant: Plant sp 79.1 16 0.00035 32.0 8.5 45 421-465 51-99 (186)
320 KOG1464 COP9 signalosome, subu 78.7 58 0.0013 30.5 17.4 238 184-427 41-325 (440)
321 PF13374 TPR_10: Tetratricopep 78.5 5.7 0.00012 24.7 4.5 28 202-229 3-30 (42)
322 KOG0276 Vesicle coat complex C 78.2 46 0.00099 35.0 12.6 149 283-464 598-746 (794)
323 PF14853 Fis1_TPR_C: Fis1 C-te 78.2 4.1 9E-05 27.6 3.8 32 410-441 6-37 (53)
324 PF04097 Nic96: Nup93/Nic96; 77.8 44 0.00094 36.4 13.5 209 176-399 117-353 (613)
325 PRK09687 putative lyase; Provi 77.5 70 0.0015 30.8 27.5 78 169-248 36-117 (280)
326 smart00028 TPR Tetratricopepti 77.4 4.6 0.0001 22.7 3.7 28 409-436 5-32 (34)
327 KOG3807 Predicted membrane pro 77.1 53 0.0011 31.7 11.8 19 423-441 380-398 (556)
328 COG1747 Uncharacterized N-term 77.0 96 0.0021 32.1 22.1 167 269-442 64-242 (711)
329 KOG1586 Protein required for f 77.0 61 0.0013 29.8 14.8 89 351-439 128-229 (288)
330 KOG1586 Protein required for f 77.0 61 0.0013 29.8 13.0 22 416-437 165-186 (288)
331 COG4649 Uncharacterized protei 76.9 50 0.0011 28.8 14.1 134 99-234 59-200 (221)
332 PF11207 DUF2989: Protein of u 76.5 23 0.00049 31.7 8.9 73 218-291 123-198 (203)
333 PF13181 TPR_8: Tetratricopept 76.0 6.2 0.00013 23.3 3.9 28 440-467 2-29 (34)
334 PF13762 MNE1: Mitochondrial s 75.9 48 0.001 28.0 10.5 76 174-249 43-128 (145)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 75.7 19 0.00042 27.8 7.0 58 117-177 25-83 (103)
336 KOG1920 IkappaB kinase complex 75.7 1.6E+02 0.0034 34.0 22.8 119 274-403 911-1029(1265)
337 PF04097 Nic96: Nup93/Nic96; 75.6 1.3E+02 0.0028 32.8 20.7 39 74-112 117-158 (613)
338 KOG0890 Protein kinase of the 75.5 2.2E+02 0.0049 35.6 25.1 312 141-470 1389-1733(2382)
339 PF13762 MNE1: Mitochondrial s 75.4 49 0.0011 28.0 12.0 93 57-150 26-130 (145)
340 KOG4648 Uncharacterized conser 75.3 9.3 0.0002 36.8 6.5 85 309-404 104-197 (536)
341 PRK10941 hypothetical protein; 74.8 13 0.00028 35.3 7.5 62 407-468 183-244 (269)
342 PF13174 TPR_6: Tetratricopept 74.2 4.7 0.0001 23.5 3.0 28 441-468 2-29 (33)
343 KOG1258 mRNA processing protei 74.2 1.2E+02 0.0026 32.0 25.9 341 97-460 43-421 (577)
344 PF13934 ELYS: Nuclear pore co 73.2 78 0.0017 29.3 12.1 106 305-419 79-186 (226)
345 PF13174 TPR_6: Tetratricopept 72.4 5.2 0.00011 23.3 2.9 28 410-437 5-32 (33)
346 PRK15180 Vi polysaccharide bio 72.2 77 0.0017 32.3 12.1 120 314-437 301-423 (831)
347 PF02284 COX5A: Cytochrome c o 72.1 21 0.00046 27.9 6.6 49 397-445 37-85 (108)
348 KOG1498 26S proteasome regulat 70.4 1.2E+02 0.0026 30.2 13.3 93 377-473 135-246 (439)
349 PRK13342 recombination factor 70.2 1.4E+02 0.0029 30.7 15.2 116 116-250 154-279 (413)
350 PF09670 Cas_Cas02710: CRISPR- 70.1 77 0.0017 32.0 12.3 122 311-433 140-269 (379)
351 COG3947 Response regulator con 69.6 17 0.00038 34.3 6.8 58 409-466 283-340 (361)
352 KOG1550 Extracellular protein 68.1 1.8E+02 0.0038 31.3 19.9 110 115-231 228-358 (552)
353 PF11768 DUF3312: Protein of u 67.7 63 0.0014 33.7 10.9 55 276-330 413-472 (545)
354 PF04190 DUF410: Protein of un 67.6 1.1E+02 0.0025 28.9 16.0 95 109-204 20-124 (260)
355 KOG2396 HAT (Half-A-TPR) repea 67.3 1.6E+02 0.0035 30.5 27.1 102 333-437 455-563 (568)
356 KOG4234 TPR repeat-containing 67.2 87 0.0019 28.1 10.1 92 348-439 106-202 (271)
357 KOG0376 Serine-threonine phosp 66.4 10 0.00022 38.4 5.0 83 384-466 15-99 (476)
358 KOG1550 Extracellular protein 66.1 1.9E+02 0.0042 31.0 21.2 172 186-363 228-423 (552)
359 PRK15180 Vi polysaccharide bio 66.1 45 0.00097 33.9 9.2 131 282-417 300-437 (831)
360 PF13929 mRNA_stabil: mRNA sta 65.5 1.3E+02 0.0028 28.8 14.5 168 9-195 88-263 (292)
361 PHA02875 ankyrin repeat protei 65.0 1.7E+02 0.0037 29.9 16.2 56 278-337 172-230 (413)
362 COG4455 ImpE Protein of avirul 64.9 28 0.0006 31.6 6.8 64 376-439 4-69 (273)
363 COG4785 NlpI Lipoprotein NlpI, 64.4 1.1E+02 0.0025 27.8 16.2 81 149-230 79-162 (297)
364 PF09477 Type_III_YscG: Bacter 64.3 71 0.0015 25.3 9.7 79 150-231 21-99 (116)
365 COG2976 Uncharacterized protei 64.2 1.1E+02 0.0023 27.4 10.8 89 143-231 97-189 (207)
366 KOG0890 Protein kinase of the 63.8 3.9E+02 0.0084 33.7 29.2 160 39-207 1389-1552(2382)
367 PF10579 Rapsyn_N: Rapsyn N-te 63.4 26 0.00056 25.9 5.3 47 349-395 18-65 (80)
368 PF10366 Vps39_1: Vacuolar sor 63.1 71 0.0015 25.5 8.4 27 203-229 41-67 (108)
369 KOG4642 Chaperone-dependent E3 63.0 19 0.00042 33.0 5.6 67 400-466 38-105 (284)
370 PF14561 TPR_20: Tetratricopep 62.7 15 0.00032 28.2 4.3 44 426-469 9-52 (90)
371 COG3947 Response regulator con 62.3 1.5E+02 0.0032 28.4 13.3 71 305-376 282-356 (361)
372 PHA02875 ankyrin repeat protei 61.1 1.3E+02 0.0028 30.8 12.4 140 45-197 11-159 (413)
373 KOG0276 Vesicle coat complex C 60.9 76 0.0016 33.5 9.9 21 70-90 616-636 (794)
374 PF09477 Type_III_YscG: Bacter 59.5 88 0.0019 24.8 8.4 80 47-129 20-99 (116)
375 PF10366 Vps39_1: Vacuolar sor 58.7 66 0.0014 25.7 7.5 28 100-127 40-67 (108)
376 KOG4077 Cytochrome c oxidase, 58.2 60 0.0013 26.5 6.9 70 320-400 67-136 (149)
377 cd08819 CARD_MDA5_2 Caspase ac 58.0 65 0.0014 24.4 6.7 67 51-119 20-86 (88)
378 TIGR03504 FimV_Cterm FimV C-te 57.8 26 0.00057 22.6 4.1 24 207-230 5-28 (44)
379 COG4455 ImpE Protein of avirul 57.6 74 0.0016 29.0 8.1 60 102-163 4-63 (273)
380 KOG3824 Huntingtin interacting 57.2 32 0.0007 32.8 6.1 32 418-449 129-160 (472)
381 cd08819 CARD_MDA5_2 Caspase ac 57.1 65 0.0014 24.4 6.6 65 155-221 22-86 (88)
382 KOG0545 Aryl-hydrocarbon recep 57.1 70 0.0015 29.7 8.0 56 413-468 238-293 (329)
383 PF11846 DUF3366: Domain of un 57.0 41 0.00089 30.1 6.9 34 403-436 142-175 (193)
384 smart00386 HAT HAT (Half-A-TPR 56.4 18 0.00039 20.7 3.2 29 419-447 1-29 (33)
385 PF07163 Pex26: Pex26 protein; 55.6 1.4E+02 0.003 28.4 9.9 85 208-294 90-181 (309)
386 KOG1308 Hsp70-interacting prot 55.6 7.7 0.00017 37.5 1.9 86 386-471 127-214 (377)
387 COG2909 MalT ATP-dependent tra 55.3 3.4E+02 0.0075 30.4 23.0 310 156-499 332-684 (894)
388 KOG4507 Uncharacterized conser 55.2 59 0.0013 34.1 8.0 95 350-447 620-718 (886)
389 PF11663 Toxin_YhaV: Toxin wit 55.2 15 0.00033 30.3 3.3 32 111-145 107-138 (140)
390 PF07163 Pex26: Pex26 protein; 54.0 1.2E+02 0.0025 28.9 9.1 87 105-193 89-181 (309)
391 PRK13800 putative oxidoreducta 53.8 4E+02 0.0087 30.7 28.8 123 269-399 754-878 (897)
392 TIGR03504 FimV_Cterm FimV C-te 53.3 34 0.00073 22.1 4.0 21 310-330 7-27 (44)
393 PF14863 Alkyl_sulf_dimr: Alky 51.6 54 0.0012 27.6 6.2 64 390-456 58-121 (141)
394 smart00804 TAP_C C-terminal do 51.2 15 0.00032 26.0 2.3 25 112-136 38-62 (63)
395 PF10579 Rapsyn_N: Rapsyn N-te 51.1 43 0.00094 24.8 4.7 47 314-360 18-66 (80)
396 KOG0403 Neoplastic transformat 49.7 3E+02 0.0066 28.1 18.9 58 376-433 512-571 (645)
397 KOG3364 Membrane protein invol 49.5 1.1E+02 0.0024 25.6 7.3 33 408-440 74-106 (149)
398 PF04910 Tcf25: Transcriptiona 48.8 2.9E+02 0.0064 27.7 17.1 50 346-398 112-164 (360)
399 PRK10564 maltose regulon perip 48.5 36 0.00078 32.6 5.1 44 200-243 255-299 (303)
400 KOG4279 Serine/threonine prote 48.4 3.9E+02 0.0085 29.4 12.8 182 202-437 202-398 (1226)
401 PF09986 DUF2225: Uncharacteri 48.3 88 0.0019 28.6 7.6 62 408-469 121-195 (214)
402 COG5159 RPN6 26S proteasome re 48.3 2.2E+02 0.0048 27.1 9.9 125 105-230 9-154 (421)
403 PF08311 Mad3_BUB1_I: Mad3/BUB 48.1 1.3E+02 0.0028 24.8 7.9 42 423-464 81-124 (126)
404 PF11848 DUF3368: Domain of un 47.6 78 0.0017 20.8 5.2 33 313-345 13-45 (48)
405 KOG2422 Uncharacterized conser 46.8 3.7E+02 0.0081 28.5 12.1 123 347-469 248-408 (665)
406 PF11848 DUF3368: Domain of un 46.6 81 0.0018 20.7 5.2 34 211-244 12-45 (48)
407 PF10255 Paf67: RNA polymerase 46.2 62 0.0013 32.8 6.7 27 439-465 164-190 (404)
408 PF07575 Nucleopor_Nup85: Nup8 46.1 2.4E+02 0.0052 30.4 11.8 58 236-295 405-462 (566)
409 PF07720 TPR_3: Tetratricopept 45.9 52 0.0011 20.1 3.9 19 409-427 5-23 (36)
410 PF11663 Toxin_YhaV: Toxin wit 45.7 23 0.00049 29.3 2.9 33 313-347 106-138 (140)
411 COG4976 Predicted methyltransf 44.0 35 0.00076 31.2 4.1 56 383-438 5-62 (287)
412 PF11838 ERAP1_C: ERAP1-like C 43.9 3.2E+02 0.0069 26.6 17.4 84 351-434 144-230 (324)
413 KOG2066 Vacuolar assembly/sort 43.8 4.9E+02 0.011 28.8 24.7 31 272-302 506-536 (846)
414 PF12862 Apc5: Anaphase-promot 43.2 71 0.0015 24.6 5.4 52 416-467 9-69 (94)
415 PF11846 DUF3366: Domain of un 43.0 87 0.0019 28.0 6.7 52 348-399 119-170 (193)
416 KOG0991 Replication factor C, 42.4 2.8E+02 0.0062 25.7 11.7 148 176-348 136-283 (333)
417 PRK10564 maltose regulon perip 42.1 51 0.0011 31.6 5.1 42 303-344 258-299 (303)
418 KOG4567 GTPase-activating prot 41.8 3.4E+02 0.0073 26.3 10.5 73 322-400 263-345 (370)
419 PF08967 DUF1884: Domain of un 41.7 28 0.00061 25.7 2.5 28 488-515 5-32 (85)
420 PF06552 TOM20_plant: Plant sp 41.7 1.4E+02 0.0029 26.4 7.1 29 320-350 53-82 (186)
421 PF15469 Sec5: Exocyst complex 40.1 2.6E+02 0.0057 24.6 11.1 24 342-365 91-114 (182)
422 cd08326 CARD_CASP9 Caspase act 39.5 93 0.002 23.5 5.2 63 52-118 18-80 (84)
423 KOG4077 Cytochrome c oxidase, 39.5 1.7E+02 0.0036 24.1 6.8 47 117-164 67-113 (149)
424 PF14689 SPOB_a: Sensor_kinase 39.4 48 0.001 23.3 3.5 30 301-330 22-51 (62)
425 KOG0292 Vesicle coat complex C 39.1 42 0.00091 36.9 4.4 77 343-435 626-702 (1202)
426 KOG2297 Predicted translation 38.9 3.7E+02 0.008 26.0 12.2 54 85-149 184-237 (412)
427 PF14689 SPOB_a: Sensor_kinase 38.8 51 0.0011 23.2 3.5 27 203-229 25-51 (62)
428 KOG0686 COP9 signalosome, subu 38.7 4.3E+02 0.0094 26.7 14.3 59 171-229 151-215 (466)
429 COG2976 Uncharacterized protei 38.3 3E+02 0.0065 24.8 15.6 87 246-332 99-189 (207)
430 PF03943 TAP_C: TAP C-terminal 37.7 13 0.00028 24.9 0.4 24 113-136 27-50 (51)
431 KOG2063 Vacuolar assembly/sort 37.2 6.7E+02 0.015 28.5 18.7 209 204-449 507-742 (877)
432 KOG0376 Serine-threonine phosp 37.0 68 0.0015 32.8 5.3 56 414-469 13-68 (476)
433 PF12926 MOZART2: Mitotic-spin 36.9 1.9E+02 0.004 22.0 7.2 63 31-95 8-70 (88)
434 cd08326 CARD_CASP9 Caspase act 36.8 1.4E+02 0.003 22.6 5.8 61 156-220 20-80 (84)
435 KOG2908 26S proteasome regulat 35.8 2.5E+02 0.0054 27.6 8.5 86 104-191 80-178 (380)
436 PF02847 MA3: MA3 domain; Int 35.0 1.1E+02 0.0025 24.2 5.7 21 207-227 8-28 (113)
437 PF14561 TPR_20: Tetratricopep 34.9 2.1E+02 0.0045 21.9 8.5 62 404-465 21-85 (90)
438 TIGR02270 conserved hypothetic 34.8 5.2E+02 0.011 26.5 25.4 91 299-400 189-279 (410)
439 COG0735 Fur Fe2+/Zn2+ uptake r 34.7 1.8E+02 0.0039 24.7 6.9 42 143-184 28-69 (145)
440 KOG2396 HAT (Half-A-TPR) repea 33.8 5.7E+02 0.012 26.7 30.0 66 98-165 104-170 (568)
441 KOG0551 Hsp90 co-chaperone CNS 33.8 2.2E+02 0.0047 27.9 7.7 84 381-464 89-178 (390)
442 KOG0686 COP9 signalosome, subu 33.8 5.2E+02 0.011 26.2 12.8 61 68-128 150-216 (466)
443 PF06957 COPI_C: Coatomer (COP 33.7 1E+02 0.0022 31.4 6.0 43 396-438 289-333 (422)
444 PF12968 DUF3856: Domain of Un 33.4 2.7E+02 0.0058 22.8 8.7 60 406-465 56-126 (144)
445 PF04034 DUF367: Domain of unk 31.9 2.9E+02 0.0063 22.7 7.8 54 374-427 67-121 (127)
446 KOG4507 Uncharacterized conser 31.2 1.7E+02 0.0037 30.9 7.0 134 333-469 567-706 (886)
447 PF04910 Tcf25: Transcriptiona 31.2 5.5E+02 0.012 25.7 15.1 115 337-467 40-167 (360)
448 KOG0687 26S proteasome regulat 31.1 5.2E+02 0.011 25.4 12.0 94 338-433 105-209 (393)
449 PF11768 DUF3312: Protein of u 31.0 3.5E+02 0.0076 28.5 9.3 56 174-229 412-472 (545)
450 PRK13800 putative oxidoreducta 31.0 8.8E+02 0.019 28.0 27.5 254 89-365 625-880 (897)
451 cd00280 TRFH Telomeric Repeat 30.8 2.8E+02 0.0061 24.6 7.3 18 382-399 120-137 (200)
452 PF11525 CopK: Copper resistan 30.4 18 0.0004 25.6 0.2 22 576-597 8-29 (73)
453 PRK10941 hypothetical protein; 30.4 4.9E+02 0.011 24.8 10.6 75 305-381 184-259 (269)
454 smart00544 MA3 Domain in DAP-5 30.1 2.8E+02 0.0061 22.0 8.1 21 207-227 8-28 (113)
455 KOG0292 Vesicle coat complex C 29.7 7.9E+02 0.017 27.8 11.8 176 214-433 606-781 (1202)
456 PF12069 DUF3549: Protein of u 29.5 5.7E+02 0.012 25.3 12.4 30 335-364 228-257 (340)
457 PRK11639 zinc uptake transcrip 28.9 2.2E+02 0.0047 24.9 6.7 34 151-184 41-74 (169)
458 KOG4521 Nuclear pore complex, 28.8 1E+03 0.022 28.0 18.1 42 378-419 1240-1286(1480)
459 PF11838 ERAP1_C: ERAP1-like C 28.7 5.5E+02 0.012 24.9 17.7 25 186-210 56-82 (324)
460 cd08332 CARD_CASP2 Caspase act 28.1 2.1E+02 0.0045 21.9 5.6 60 52-115 22-81 (90)
461 PRK14962 DNA polymerase III su 28.0 7.2E+02 0.016 26.1 13.4 30 62-93 192-221 (472)
462 PF14427 Pput2613-deam: Pput_2 27.6 2E+02 0.0044 22.8 5.3 54 528-583 46-101 (118)
463 KOG1524 WD40 repeat-containing 27.5 3E+02 0.0065 28.7 7.9 89 372-463 572-668 (737)
464 COG5108 RPO41 Mitochondrial DN 27.1 2.3E+02 0.0051 30.4 7.3 47 38-84 33-81 (1117)
465 COG4976 Predicted methyltransf 27.1 1.2E+02 0.0025 28.0 4.6 55 415-469 5-59 (287)
466 PF11817 Foie-gras_1: Foie gra 27.1 2.4E+02 0.0052 26.4 7.2 21 344-364 185-205 (247)
467 PRK14700 recombination factor 26.8 6E+02 0.013 24.7 9.6 65 203-267 125-197 (300)
468 COG5191 Uncharacterized conser 26.6 1.5E+02 0.0032 28.7 5.3 31 415-445 152-182 (435)
469 PF12862 Apc5: Anaphase-promot 26.5 3E+02 0.0064 21.1 7.9 53 313-365 9-69 (94)
470 PRK11639 zinc uptake transcrip 26.2 2.4E+02 0.0051 24.7 6.4 61 328-390 17-77 (169)
471 PRK13342 recombination factor 25.9 7.3E+02 0.016 25.4 18.6 101 233-351 173-279 (413)
472 PF04190 DUF410: Protein of un 25.8 5.8E+02 0.012 24.2 21.7 159 182-366 2-170 (260)
473 COG0735 Fur Fe2+/Zn2+ uptake r 25.5 3.2E+02 0.007 23.1 7.0 63 325-389 9-71 (145)
474 PF11817 Foie-gras_1: Foie gra 25.2 2.7E+02 0.0059 26.1 7.1 55 139-193 182-241 (247)
475 PF08424 NRDE-2: NRDE-2, neces 24.5 6.8E+02 0.015 24.6 14.7 62 218-281 48-109 (321)
476 PF02607 B12-binding_2: B12 bi 24.4 1.5E+02 0.0033 21.6 4.3 39 313-351 12-50 (79)
477 PF10475 DUF2450: Protein of u 24.4 6.5E+02 0.014 24.3 11.4 53 175-229 103-155 (291)
478 cd07153 Fur_like Ferric uptake 24.1 1.8E+02 0.0039 23.2 5.0 46 105-151 6-51 (116)
479 PRK05414 urocanate hydratase; 23.6 67 0.0015 33.1 2.7 69 112-194 216-289 (556)
480 cd00280 TRFH Telomeric Repeat 23.5 2.6E+02 0.0056 24.8 5.8 31 410-441 116-146 (200)
481 cd07153 Fur_like Ferric uptake 23.5 1.9E+02 0.0041 23.1 5.1 46 308-353 6-51 (116)
482 PF02607 B12-binding_2: B12 bi 23.1 1.7E+02 0.0038 21.3 4.4 40 211-250 11-50 (79)
483 COG0790 FOG: TPR repeat, SEL1 23.0 6.6E+02 0.014 23.9 17.8 203 46-252 54-288 (292)
484 PF10475 DUF2450: Protein of u 22.9 2.7E+02 0.0058 26.9 6.8 22 200-221 196-217 (291)
485 PF00244 14-3-3: 14-3-3 protei 22.8 6.2E+02 0.014 23.5 11.4 161 308-469 7-199 (236)
486 smart00777 Mad3_BUB1_I Mad3/BU 22.6 4.4E+02 0.0095 21.7 8.0 40 424-463 82-123 (125)
487 PRK14962 DNA polymerase III su 22.6 9.1E+02 0.02 25.3 14.0 35 212-246 254-288 (472)
488 KOG3824 Huntingtin interacting 22.5 1.4E+02 0.0029 28.8 4.3 57 385-441 128-186 (472)
489 PF08311 Mad3_BUB1_I: Mad3/BUB 21.8 4.5E+02 0.0099 21.5 9.5 42 219-260 81-123 (126)
490 COG5187 RPN7 26S proteasome re 21.7 3.4E+02 0.0074 26.0 6.6 129 333-465 77-218 (412)
491 cd08332 CARD_CASP2 Caspase act 21.7 3.7E+02 0.0081 20.5 6.2 36 182-217 46-81 (90)
492 PF14669 Asp_Glu_race_2: Putat 21.5 6E+02 0.013 22.8 13.7 93 194-296 100-206 (233)
493 PF01475 FUR: Ferric uptake re 21.4 1.6E+02 0.0035 23.8 4.2 47 306-352 11-57 (120)
494 PF08225 Antimicrobial19: Pseu 21.3 57 0.0012 17.0 0.9 10 562-571 11-20 (23)
495 TIGR01503 MthylAspMut_E methyl 21.2 1.2E+02 0.0026 31.0 4.0 204 317-549 29-250 (480)
496 COG2912 Uncharacterized conser 21.2 2.5E+02 0.0053 26.7 5.7 58 410-467 186-243 (269)
497 PF10255 Paf67: RNA polymerase 21.2 4E+02 0.0086 27.2 7.6 57 172-228 124-191 (404)
498 TIGR02710 CRISPR-associated pr 21.1 8.7E+02 0.019 24.6 11.9 28 311-338 139-166 (380)
499 COG5108 RPO41 Mitochondrial DN 21.1 5E+02 0.011 28.1 8.3 72 307-382 33-112 (1117)
500 cd04440 DEP_2_P-Rex DEP (Dishe 20.8 49 0.0011 25.5 0.9 35 558-593 51-85 (93)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-117 Score=967.23 Aligned_cols=572 Identities=38% Similarity=0.682 Sum_probs=564.8
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 107 (600)
+..||..+|+.++.+|++.++++.|.++|..|.+.|+.||+.+||.|+++|+++|++++|+++|++|++||+++||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 187 (600)
+|++.|++++|+++|++|.+.| +.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+|..++|+|+++|+++|+++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 007530 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267 (600)
Q Consensus 188 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 267 (600)
+|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|.++|..|.+.|+
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
+||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 427 (600)
++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc--------ccCcchHHHHHHHHH
Q 007530 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEK 499 (600)
Q Consensus 428 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~l~~ 499 (600)
++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.|++||+++.+. ..||+.+++++.+.+
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765 579999999999999
Q ss_pred HHHHHHHCCCccCCcccccccchhHHhhHhhHHHHHHHHHHccccCCCCCcEEEEecccccCCchhHHHHHhhhcCCcEE
Q 007530 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579 (600)
Q Consensus 500 l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~ 579 (600)
+..+|++.||.||+..++|++++++++..+.+|||+||++|||+.+|+|.||||+||+|+|+|||+|+|+||++.+|+||
T Consensus 597 l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 676 (697)
T PLN03081 597 LMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIV 676 (697)
T ss_pred HHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCCCC
Q 007530 580 VRDLNRFHHFTNGSCSCWDFW 600 (600)
Q Consensus 580 ~~d~~~~h~~~~g~csc~~~w 600 (600)
|||.+|||||+||+|||+|||
T Consensus 677 ~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 677 VRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EecCCccccCCCCcccccccC
Confidence 999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-113 Score=954.29 Aligned_cols=578 Identities=37% Similarity=0.692 Sum_probs=565.4
Q ss_pred chhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC
Q 007530 17 SSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96 (600)
Q Consensus 17 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 96 (600)
+......|...|..||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||.||.+|+++|++++|.++|++|.+
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 34556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007530 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (600)
||+++||++|.+|++.|++++|+++|++|.+.| +.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 007530 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 256 (600)
+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 416 (600)
..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc--------ccCc
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHP 488 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~--------~~~~ 488 (600)
.+++.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+|++||+++++. .+||
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 6899
Q ss_pred chHHHHHHHHHHHHHHHHCCCccCCcccccccchhHHhhHhhHHHHHHHHHHccccCCCCCcEEEEecccccCCchhHHH
Q 007530 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568 (600)
Q Consensus 489 ~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~ 568 (600)
+.++|+..|+++..+|++.||.||+..++ +.++++|+..|++|||+||++|||+++|++.||||+||+|+|+|||+|+|
T Consensus 749 ~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 827 (857)
T PLN03077 749 QIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827 (857)
T ss_pred chHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHH
Confidence 99999999999999999999999998877 55788999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEecCCcccccccccccCCC
Q 007530 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWD 598 (600)
Q Consensus 569 ~~~~~~~~~~~~~d~~~~h~~~~g~csc~~ 598 (600)
+||++.+|+|||||.+|||||+||+|||+|
T Consensus 828 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-74 Score=645.10 Aligned_cols=560 Identities=23% Similarity=0.396 Sum_probs=498.3
Q ss_pred hhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC
Q 007530 18 SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97 (600)
Q Consensus 18 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 97 (600)
......+...|.+|+..+|..++++|.+.+.++.|.++|+.+.+.|..++..++|+||.+|+++|+++.|+++|++|++|
T Consensus 71 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~ 150 (857)
T PLN03077 71 LKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER 150 (857)
T ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC
Confidence 34455666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
|+++||++|++|++.|++++|+++|++|...| +.||.+||++++++|+..+++..+.+++..+++.|+.||..++|+|+
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 337 (600)
+|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||.
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 417 (600)
.||+.++.+|++.|++++|.++++.|. +.|+.|+..+|++||++|+++|++++|.++|++|+ +||..+|++++.+|..
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRL 467 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999996 57999999999999999999999999999999997 6899999999999999
Q ss_pred cCChHHHHHHHHHHhc-CCCCCcchHHHHH-----------------------------------HHHHhcCChHHHHHH
Q 007530 418 YRNLELAEIAAKQLFG-MEPDNAGNHLLLS-----------------------------------NIYAANRRWEEVARA 461 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~-----------------------------------~~~~~~g~~~~a~~~ 461 (600)
.|+.++|..+|++|.+ ..|+ ..+|..++ ++|.++|++++|.++
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd-~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPN-SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCC-HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 9999999999999986 3444 44555554 555555555555555
Q ss_pred HHHhhhCCCccCCceEE-EEEcCcccCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhHHhhHh---hHHHHHHH
Q 007530 462 RKLIRDSEVKKEKSKSW-VEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL---IHHSEKLA 537 (600)
Q Consensus 462 ~~~m~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l---~~h~~~~a 537 (600)
|+.| . ++. .+| .++.++..|++.+++. +++++|.+.|+.||..++..-+..+.+.+.+ ....+.+.
T Consensus 547 f~~~-~----~d~-~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 547 FNSH-E----KDV-VSWNILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHhc-C----CCh-hhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 5554 1 222 344 5577778899988887 6888999999999988876655555444333 23455566
Q ss_pred HHHccccCCCCCcEEEEecccccCCchhHHHHHhhhcC-Cc-----EEEecCCcccccccc
Q 007530 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG-RE-----TIVRDLNRFHHFTNG 592 (600)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~-~~-----~~~~d~~~~h~~~~g 592 (600)
..+|+.+....+. ++|+.+.++|+.++|.++|.+|+- ++ .++..|+.+.+.+.|
T Consensus 617 ~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 617 EKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 6788877666666 689999999999999999999973 33 233445444444444
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-62 Score=537.97 Aligned_cols=484 Identities=16% Similarity=0.162 Sum_probs=428.8
Q ss_pred CCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHHHHH
Q 007530 31 TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP----QRCIVSWNTII 106 (600)
Q Consensus 31 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li 106 (600)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 58999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHHcC
Q 007530 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK--AAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g 184 (600)
.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999 999999999999999999999999999999987 578999999999999999999
Q ss_pred CHHHHHHHHccCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 185 LISDASRVFESMPE----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 185 ~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|.
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999986 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
.|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999995 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH----hcC-------------------CHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG----RAG-------------------LIHEAY 393 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~ 393 (600)
..||+.++.+|++.|++++|.++|+.|. +.|+.||..+|++|+.++. +++ ..++|.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999996 5799999999999997643 222 246799
Q ss_pred HHHHcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 394 DLILNM---PFDATASMWGSLLASCRNYRNLELAEIAAKQLFG-MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 394 ~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.+|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..|++++.+ ..++|..++++|.+.|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcC
Confidence 999999 7899999999999877788888888888877653 334456789999998732 2368999999999999
Q ss_pred CccCCc--eEEEEEcCc-ccCcchHHHHHHHHHHHHHHHHCC-CccCCccccc
Q 007530 470 VKKEKS--KSWVEIKGK-RNHPRIAEIYSKLEKLVEEMKKLG-YKPETEHDLH 518 (600)
Q Consensus 470 ~~~~~~--~~~~~i~~~-~~~~~~~~~~~~l~~l~~~m~~~g-~~pd~~~~~~ 518 (600)
+.|+.. .+-..++.. -+-+-.+-++..+-.-+++..+.| -.|.....++
T Consensus 911 i~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~ 963 (1060)
T PLN03218 911 VVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLP 963 (1060)
T ss_pred CCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeec
Confidence 998874 221223322 222333333333333333444556 3455443333
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-62 Score=536.71 Aligned_cols=479 Identities=11% Similarity=0.132 Sum_probs=426.9
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 106 (600)
+..++...|..++..|.+.|+++.|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+||.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4445677899999999999999999999999999995 578888899999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 007530 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 186 (600)
.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 187 SDASRVFESMPE----RNEVTWSSMVAGFVQNELYEEALILFRRAQV--LGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 187 ~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
++|.++|+.|.+ ||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999964 8999999999999999999999999999986 6799999999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
.|.+.|+.|+..+|++++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999998 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCCHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM---PFDATASMWGSLLA 413 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~ 413 (600)
..+|+.++.+|++.|++++|.++|+.|. ..|+.||..+|++||.+|++.|++++|.++|++| ++.||..+|++++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999995 5799999999999999999999999999999988 68899999999999
Q ss_pred HHHHcCChHHHHHHHHHHhc--CCCCCcchHHHHHHHHH----hcCC-------------------hHHHHHHHHHhhhC
Q 007530 414 SCRNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYA----ANRR-------------------WEEVARARKLIRDS 468 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~----~~g~-------------------~~~a~~~~~~m~~~ 468 (600)
+|.+.|+++.|.++++++.+ +.|+ ..+|..|..+|. +++. .++|..+|++|.+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999998 4554 567888877643 2221 24566666666666
Q ss_pred CCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCCccCC
Q 007530 469 EVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513 (600)
Q Consensus 469 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 513 (600)
|+.|+..+....+.+....... .....+++.|...|..|+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~----~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDA----TLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccH----HHHHHHHHHhccCCCCcch
Confidence 6666654433333322211111 2223445555555555543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-61 Score=525.66 Aligned_cols=486 Identities=22% Similarity=0.342 Sum_probs=433.6
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 007530 96 QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (600)
.++..+|+.+|.+|.+.|++++|+++|+.|...+...||..||+.++.+|++.++++.+.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45778999999999999999999999999998754789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007530 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 335 (600)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 007530 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415 (600)
Q Consensus 336 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 415 (600)
|..||+.++.+|++.|++++|.+++..|. +.|+.||..+|++||++|+++|++++|.++|++|. +||..+|++|+.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 99999999999999999999999999996 56999999999999999999999999999999997 68999999999999
Q ss_pred HHcCChHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-CCCccCCceEEEEEcCcccCcchHH
Q 007530 416 RNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD-SEVKKEKSKSWVEIKGKRNHPRIAE 492 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 492 (600)
+++|+.++|.+++++|.+ ..|+ ..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+...+..+++.+.+.++.++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999987 5665 57999999999999999999999999986 6998888888888999999999999
Q ss_pred HHHHHHHHHHHHHHCCCccCCcccccccchhHHhhHh---hHHHHHHHHHHccccCCCCCcEEEEecccccCCchhHHHH
Q 007530 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL---IHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569 (600)
Q Consensus 493 ~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l---~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~ 569 (600)
+.+. + ++.++.|+..++..-+..+.+.+.+ ....++ .+++.+...+..+.+++.|..+|+..+|.++
T Consensus 481 A~~~----~---~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 481 AYAM----I---RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHH----H---HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 8753 3 3468889876543323222221111 111121 2355444444555578899999999999999
Q ss_pred HhhhcCCcEEEe-------cCCcccccccccc
Q 007530 570 ASRIAGRETIVR-------DLNRFHHFTNGSC 594 (600)
Q Consensus 570 ~~~~~~~~~~~~-------d~~~~h~~~~g~c 594 (600)
+..|..+.+-.. -.+..|.|-.|..
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999998865321 2245677765543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.5e-27 Score=269.46 Aligned_cols=418 Identities=11% Similarity=0.060 Sum_probs=230.3
Q ss_pred HHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhH
Q 007530 41 QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQE 117 (600)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 117 (600)
..+.+.|+++.|..++..+.+. .++++.++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444444332 233444455555555555555555555554321 233344445555555555555
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 118 A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
|.+.|+++... .|.+..++..+...+...|+.++|..++..+.+.++ .+...+..++..|.+.|++++|..+++.+.
T Consensus 518 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 518 AIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555544 233444555555555555555555555555554432 234445555555555555555555555543
Q ss_pred C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHH
Q 007530 198 E---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274 (600)
Q Consensus 198 ~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 274 (600)
+ .+...|..+...|.+.|++++|+..|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+...+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 2 244555555666666666666666665555432 2234445555555555666666666665555543 3345555
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 275 SSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351 (600)
Q Consensus 275 ~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 351 (600)
..+...+.+.|++++|.++++.+.+ .+...|..+...+...|++++|+..|+++... .|+..++..+..++.+.|
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 5566666666666666666655542 24445555556666666666666666666553 344455555666666666
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 007530 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAK 429 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 429 (600)
++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ ++|...++
T Consensus 751 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 666666666666532 2334556666666666666666666666665 122345566666666666666 55666666
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 430 QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 430 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666666666666666666666666666666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.7e-26 Score=262.72 Aligned_cols=428 Identities=12% Similarity=0.029 Sum_probs=378.7
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHH
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTI 105 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 105 (600)
.+++..++..+...+...|+++.|.+.+..+++.. +.+...+..+...|...|++++|.+.|+.+.+ .+..+++.+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34566788889999999999999999999998764 55677888899999999999999999998753 467789999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...+.+.|++++|...|+++...+ +.+...+..+...+...|+.++|..+++.+.+.. +.+..++..+...|.+.|+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998874 6677888899999999999999999999998765 4478899999999999999
Q ss_pred HHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 186 ISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 186 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
+++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|++++|..++..+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998754 367789999999999999999999999998753 445788889999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 007530 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340 (600)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 340 (600)
.+.+ +.+...+..+...|.+.|++++|.+.|+.+.. |+..++..++..+.+.|+.++|.+.++++.+.. +.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 8876 56778888999999999999999999998763 556778889999999999999999999998863 4567888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc
Q 007530 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNY 418 (600)
Q Consensus 341 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 418 (600)
..+...|...|+.++|.+.|+.+.+.. +++...+..+...+.+.|+ .+|..+++++ ...| +..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 889999999999999999999997542 4578889999999999999 8899999876 3334 467888899999999
Q ss_pred CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
|++++|...++++++.+|.++.++..++.+|.+.|++++|.++++.|.
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999886
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.94 E-value=4.7e-27 Score=189.24 Aligned_cols=102 Identities=57% Similarity=1.037 Sum_probs=89.4
Q ss_pred ceEEEE----EcCcccCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhHH--------hhHhhHHHHHHHHHHcc
Q 007530 475 SKSWVE----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK--------QELLIHHSEKLALTFGL 542 (600)
Q Consensus 475 ~~~~~~----i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~l~~h~~~~a~~~~~ 542 (600)
+++|+. +.+-.+||+. ++..++...||.|++..+.|+++++++ +..+.+|||+||++||+
T Consensus 2 ~~~w~~~h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgl 73 (116)
T PF14432_consen 2 GCSWIEVHSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGL 73 (116)
T ss_pred CCCccceEEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcc
Confidence 567766 3455889987 456677889999999999998876655 67889999999999999
Q ss_pred ccCCCCCcEEEEecc-cccCCchhHHHHHhhhcCCcEEEecCCcccccc
Q 007530 543 MCLCPGVPIRIMKNL-RICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590 (600)
Q Consensus 543 ~~~~~~~~~~~~~~~-~~c~~~~~a~~~~~~~~~~~~~~~d~~~~h~~~ 590 (600)
+++ |||||+ |+|+|||+++|+||++.+|+|||||++|||||+
T Consensus 74 i~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 74 INT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred cce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 988 789999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.1e-18 Score=200.23 Aligned_cols=411 Identities=10% Similarity=0.035 Sum_probs=316.3
Q ss_pred HHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCc---chHHHH----------
Q 007530 41 QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCI---VSWNTI---------- 105 (600)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 105 (600)
..+...|+++.|...+...++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34567789999999999888764 45778888888999999999999999987653 321 223322
Q ss_pred --HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 106 --IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 106 --i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
...+.+.|++++|+..|+++++. .|.+...+..+...+...|++++|.+.++++++..+. +...+..+...|. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-h
Confidence 33567889999999999999887 4556777888888899999999999999999887543 5566777777774 4
Q ss_pred CCHHHHHHHHccCCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 007530 184 GLISDASRVFESMPERN------------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLA 250 (600)
Q Consensus 184 g~~~~A~~~f~~m~~~d------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 250 (600)
++.++|..+++.++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 67899999888776421 223555677788899999999999998875 44 4556677888899999
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc----CH---------hHHHHHHHHHHhcCC
Q 007530 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK----NV---------VLWNTMISGFSRHAR 317 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~ 317 (600)
++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988754 345555555666677889999999999987642 11 112344567888999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (600)
.++|+.+++. .+++...+..+...+.+.|++++|+..|+.+.+.. +.+...+..++..|...|++++|++.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999872 24455566778888899999999999999987542 3357788889999999999999999998
Q ss_pred cCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 398 NMP-FDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG------NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 398 ~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
... ..| +...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|...++...
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 773 344 4567777888888999999999999999987765442 45567889999999999999988775
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=2.2e-18 Score=197.66 Aligned_cols=451 Identities=11% Similarity=0.017 Sum_probs=263.9
Q ss_pred ccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc------ch-----------------
Q 007530 45 RERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI------VS----------------- 101 (600)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~----------------- 101 (600)
..|+.++|...++.+++.. +.++..+..+...+...|+.++|+..|+++.+.+. ..
T Consensus 159 ~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 4577888888888887764 45666777778888888888888888876532100 00
Q ss_pred HH----------------------------------HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 007530 102 WN----------------------------------TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147 (600)
Q Consensus 102 ~~----------------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~ 147 (600)
+. .....+...|++++|+..|++.++. -|.+...+..+..++.+
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~ 315 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQ 315 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 00 1123345667777888888777775 34566777777777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCCh-hHH------------HHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHH
Q 007530 148 KRDVFECKQLHVFALKAAMDRNV-FVG------------TALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGF 211 (600)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~-~~~------------~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 211 (600)
.|+.++|...++++++..+.... ..+ ..+...+.+.|++++|+..|++..+ .+...+..+...+
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA 395 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888888877777776443211 111 1223456677778888777777654 2455666777777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCC--------CCchhHHHHHHHHHH
Q 007530 212 VQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAVLCKTGF--------GSNMFAASSLVDMYA 282 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~y~ 282 (600)
.+.|++++|++.|++..+. .|+ ...+..+...+. .++.++|..++..+..... ......+..+...+.
T Consensus 396 ~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7778888888887777654 232 223333322221 1223333333222111000 000111222333444
Q ss_pred hhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH------------------
Q 007530 283 KCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTY------------------ 340 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~------------------ 340 (600)
..|++++|.+.|++..+ | +...+..+...|.+.|++++|+..++++.+. .|+ ...+
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44555555555554432 1 2334444444555555555555555554432 121 1111
Q ss_pred --------------------------HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 341 --------------------------ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 341 --------------------------~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
......+...|+.++|.++++. .+++...+..+...|.+.|++++|++
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 1233445555666666665541 13344566677888888888888888
Q ss_pred HHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 007530 395 LILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 395 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 472 (600)
.|++. ...| +...+..+...+...|++++|+..++++.+..|+++..+..++.++...|++++|.++++.+....-..
T Consensus 625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 88876 3334 467888888888888888888888888888888888888888888888888888888888877643221
Q ss_pred CCceEEEE-----EcCcccCcchHHHHHHHHHHHHHHHHCCCccC
Q 007530 473 EKSKSWVE-----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512 (600)
Q Consensus 473 ~~~~~~~~-----i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 512 (600)
.+.....+ ..-....++.+++...++.. |...|+.|.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~~~ 746 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDA---MVASGITPT 746 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCC
Confidence 22111111 11124456667776654444 344566554
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-19 Score=177.19 Aligned_cols=419 Identities=12% Similarity=0.089 Sum_probs=310.5
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcC
Q 007530 36 LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTN 112 (600)
Q Consensus 36 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 112 (600)
...+..-.-..|++.+|..-...+-... +.+....-.+-..|.+..+.+....--....+ .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4445555667889988886544332221 22222222233556666666654433322222 2456788888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHcCCHHHHHH
Q 007530 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF-VGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~ 191 (600)
|++.+|+.+|+.|++. -|.....|..+..++...|+.+.|.+.+...++.. |+.. +.+.+.......|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888886 34567788888888888888888888888887753 3333 33445555666788888888
Q ss_pred HHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 007530 192 VFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAVLCKTGF 267 (600)
Q Consensus 192 ~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 267 (600)
.+.+..+ | =.+.|+.|...+..+|+...|++.|++... +.|+ ...|..+...|...+.++.|...+..+....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 8877654 3 246788888888888888888888888765 3554 3577888888888888888888888777653
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISV 343 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 343 (600)
+....++..+...|...|.++.|+..+++..+ | =...||.|..++-..|+..+|...+.+.... .|+ ....+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 44567777788888888888888888887764 3 3468888888888888888888888888774 444 4577788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCC
Q 007530 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRN 420 (600)
Q Consensus 344 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 420 (600)
...+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 888888888888888888775 34454 456778888888888888888888876 77787 4688888888888888
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.+.|.+.+.+++..+|.-...+..|+.+|...|+..+|+.-++...+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888887764
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-19 Score=175.38 Aligned_cols=388 Identities=14% Similarity=0.127 Sum_probs=329.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHH
Q 007530 66 NDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSV 141 (600)
Q Consensus 66 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~l 141 (600)
.-..+|+.+.+.+-..|++++|+.+++.+.+ ..+..|-.+..++...|+.+.|...|.+.++. .|+.+.. +.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhcch
Confidence 3467899999999999999999999998764 36789999999999999999999999999885 4555443 334
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCC---HHHHHHHHHHHHhCCCHH
Q 007530 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN---EVTWSSMVAGFVQNELYE 218 (600)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~ 218 (600)
.......|++.+|...+.++++..+. -..+|+.|...+-..|++..|+.-|++..+-| ..+|-.|...|-..+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 44455679999999999988887442 45679999999999999999999999988744 458899999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 219 EALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 219 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
+|+..|.+.... .|+ ...+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|...+.+.
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999887764 665 4677778888899999999999999999864 344778999999999999999999999987
Q ss_pred CC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-
Q 007530 298 EE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN- 372 (600)
Q Consensus 298 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 372 (600)
.. ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++.+ .+.|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 64 3567889999999999999999999999887 5665 4578899999999999999999999887 66786
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|...+...|+..+|++.++.+++++|+.+..|-.++.+..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 568899999999999999999999876 66776 5788999999999999999999999999999999999998888877
Q ss_pred hcCChHHHHHHHHHh
Q 007530 451 ANRRWEEVARARKLI 465 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m 465 (600)
--.+|.+-.+.++++
T Consensus 502 ~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 502 IVCDWTDYDKRMKKL 516 (966)
T ss_pred HHhcccchHHHHHHH
Confidence 667777644444333
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.5e-19 Score=184.84 Aligned_cols=290 Identities=11% Similarity=0.088 Sum_probs=173.5
Q ss_pred hccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC-C------cchHHHHHHHHHcCCChh
Q 007530 44 ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR-C------IVSWNTIIGSYTTNGREQ 116 (600)
Q Consensus 44 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~ 116 (600)
...|+++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...|+.+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 45566777777777776653 334556666777777777777777777665431 1 134566667777777777
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHH
Q 007530 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV----FVGTALLDVYAKCGLISDASRV 192 (600)
Q Consensus 117 ~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~ 192 (600)
+|..+|+++.+. .+++..++..++..+...|++++|.+.+..+.+.+..+.. ..+..+...+.+.|++++|.+.
T Consensus 125 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 777777777664 2445666677777777777777777777777665433221 1344556666666777777777
Q ss_pred HccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC
Q 007530 193 FESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269 (600)
Q Consensus 193 f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 269 (600)
|+++.+ .+...+..+...|.+.|++++|+++|+++...+......++..+..++...|++++|...+..+.+.. |
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 666543 23445666666666777777777777766654222223445556666666666666666666665542 3
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSR---HARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
+...+..++..|.+.|++++|..+|+++.+ |+...++.++..+.. .|+.++++.+|++|.+.++.|+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 334445566666666666666666654432 555555555555443 345556666666666555444443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.8e-17 Score=178.65 Aligned_cols=388 Identities=12% Similarity=-0.014 Sum_probs=265.8
Q ss_pred HHHHHHHhcCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCC
Q 007530 73 ILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150 (600)
Q Consensus 73 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~ 150 (600)
.+...|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+...++. -|.+...+..+..++...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence 34455556666666666666543 255556666666666666666666666666664 23345566666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----------------------------CCH
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-----------------------------RNE 201 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------------------------~d~ 201 (600)
+++|...+..+...+...+..... ++.-+.+......+...++.-+. .+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQ-AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 666666555443332111111111 11111110011112222211111 000
Q ss_pred ---HHHHHHHHH---HHhCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhH
Q 007530 202 ---VTWSSMVAG---FVQNELYEEALILFRRAQVLG-LEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273 (600)
Q Consensus 202 ---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 273 (600)
..+..+... ....+++++|++.|++....+ ..| +...+..+...+...|++++|...+..+++.. +.+...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 011111111 123468999999999998765 334 34567777778889999999999999998864 445668
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSH 349 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 349 (600)
+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHH
Confidence 88899999999999999999987653 46788999999999999999999999999885 44 45667778888999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-H-------HHHHHHHHHHHcCC
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA-S-------MWGSLLASCRNYRN 420 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~~~ 420 (600)
.|++++|+..|+...+.. +.+...+..+...+...|++++|.+.|++. ...|+. . .++..+..+...|+
T Consensus 446 ~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 999999999999987532 335678889999999999999999999885 333321 1 12222233344699
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+++|...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999888999999999999999999999888654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.2e-18 Score=176.22 Aligned_cols=299 Identities=14% Similarity=0.098 Sum_probs=158.6
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHHcC
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN---VFVGTALLDVYAKCG 184 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 184 (600)
.+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4456677777777777777653 44555666666667777777777777776665432211 234566677777777
Q ss_pred CHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 185 LISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 185 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
++++|.++|+++.+ .+..+++.++..+.+.|++++|++.++++...+..++....
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------------- 179 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI---------------------- 179 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH----------------------
Confidence 77777777776654 34556677777777777777777777776654322111000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
...+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++...+ |+.
T Consensus 180 ---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~- 247 (389)
T PRK11788 180 ---------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEY- 247 (389)
T ss_pred ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhh-
Confidence 00112233333334444444433333321 122333444444444455555555555444321 211
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRN 417 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 417 (600)
....+..++.+|.+.|++++|...++++ ...|+...+..+...+..
T Consensus 248 ---------------------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~ 294 (389)
T PRK11788 248 ---------------------------------LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEE 294 (389)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 1223344444444445555554444443 223444444555555566
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHhhhCCCccCCce
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA---NRRWEEVARARKLIRDSEVKKEKSK 476 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 476 (600)
.|++++|..+++++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|.+
T Consensus 295 ~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 295 QEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 6666666666666666666654 33333333332 3466777777777776666666653
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.4e-16 Score=174.90 Aligned_cols=402 Identities=9% Similarity=-0.013 Sum_probs=261.9
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHH
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTI 105 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 105 (600)
.+.+.....-.+......|+.+.|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34456667777888888999999999998887633 4556678889999999999999999999853 3456678888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...+...|++++|+..+++..+. .|.+.. +..+..++...|+.++|...++.+++..+. +..++..+..++.+.|.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 89999999999999999999887 455666 888888899999999999999999998655 66667778888889999
Q ss_pred HHHHHHHHccCCCCCHH--------HHHHHHHHHH-----hCCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----HHH
Q 007530 186 ISDASRVFESMPERNEV--------TWSSMVAGFV-----QNELY---EEALILFRRAQVL-GLEYNQF-TIS----SVI 243 (600)
Q Consensus 186 ~~~A~~~f~~m~~~d~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll 243 (600)
.+.|.+.++.... ++. ....++..+. ..+++ ++|++.++.+... ...|+.. .+. ..+
T Consensus 166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 9999999988776 211 1222222222 12233 6777778777753 2223221 111 113
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC-------HhHHHHHHHHHHhc
Q 007530 244 CACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN-------VVLWNTMISGFSRH 315 (600)
Q Consensus 244 ~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~ 315 (600)
.++...|++++|...|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+ ...+..+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667777788777777776522 22 122224566777777777777777654321 22344455566677
Q ss_pred CChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 316 ARSVEVMILFEKMQQAG-----------LHPNE---QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
|++++|+.+++++.... -.|+. ..+..+...+...|+.++|++.++++.... +.+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 77777777777766531 01221 123334445555666666666666665322 223445555666
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+...|++++|++.+++. ...|+ ...+..+.......|++++|+.+++++++..|+++
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 666666666666666654 33343 34445555555556666666666666666666655
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=9.9e-17 Score=176.10 Aligned_cols=398 Identities=10% Similarity=-0.002 Sum_probs=303.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 141 (600)
+.++....-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++.++. .|.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 44555556667778889999999999998764 34445899999999999999999999999886 46667778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHH
Q 007530 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYE 218 (600)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~ 218 (600)
..++...|+.++|...++.+++..+. +.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 88999999999999999999998543 556 88899999999999999999998875 3 5667777888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHH------HHHHHHHHHH-----ccCch---HHHHHHHHHHHHh-CCCCchh-H-HHH---HH
Q 007530 219 EALILFRRAQVLGLEYNQF------TISSVICACA-----GLAAL---IQGKQVHAVLCKT-GFGSNMF-A-ASS---LV 278 (600)
Q Consensus 219 ~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---l~ 278 (600)
+|++.++.... .|+.. .....+.... ..+++ +.|...++.+++. ...|+.. . ..+ .+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999886653 33320 1111222221 12233 6778888888764 2223221 1 111 12
Q ss_pred HHHHhhCCHHHHHHHHhcCCCcC---H-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccC
Q 007530 279 DMYAKCGCVVDAYFVFSGIEEKN---V-VLWNTMISGFSRHARSVEVMILFEKMQQAGLHP---NEQTYISVLSACSHIG 351 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g 351 (600)
..+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++....... .......+..++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34457799999999999988532 1 112224668999999999999999987643111 1344566777889999
Q ss_pred CHHHHHHHHHHHHHhcC----------CCcc---HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 007530 352 MVEKGKSYFDLMVKQHN----------VLPN---VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCR 416 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 416 (600)
++++|.++++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999975321 1123 234566778899999999999999987 3334 5788999999999
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..|+.++|++.++++++++|+++..+..++..+...|++++|..+++.+.+..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998653
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=5.2e-17 Score=174.51 Aligned_cols=351 Identities=12% Similarity=-0.015 Sum_probs=265.4
Q ss_pred hcCChHHHHHHHccCCC------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHH
Q 007530 80 KCGLISGARKVFDEMPQ------RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~ 153 (600)
+..+++.---+|..-++ -+....-.++..+.+.|++++|+.+++..+.. .|-+...+..++.++...|+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHH
Confidence 44555555555555543 12334455677788889999999999888887 45556667777777778899999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
|...++.+++..+. +...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...++++...
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999887544 667788888899999999999999888765 35678888888999999999999999887665
Q ss_pred CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHH
Q 007530 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNT 307 (600)
Q Consensus 231 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 307 (600)
... +...+.. +..+...|++++|...+..+++....++......+...+.+.|+.++|...|++... .+...+..
T Consensus 174 ~P~-~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPP-RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCC-CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 322 2222322 334778899999999988887765334444555667788889999999999887653 45677888
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 007530 308 MISGFSRHARSVE----VMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382 (600)
Q Consensus 308 li~~~~~~g~~~~----A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 382 (600)
+...|.+.|++++ |+..|++..+. .| +...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 8888999999885 79999998875 44 45677888888999999999999999987532 2245567778889
Q ss_pred HHhcCCHHHHHHHHHcC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 383 LGRAGLIHEAYDLILNM-PFDATASM-WGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
|.+.|++++|...++++ ...|+... +..+..++...|+.++|...++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999887 34566544 33456678889999999999999999988753
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=1.4e-15 Score=167.25 Aligned_cols=187 Identities=9% Similarity=0.001 Sum_probs=127.8
Q ss_pred HHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGMVE 354 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 354 (600)
...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+. ..+..+.......|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 3334466777777777765442 333445555666667777777777777776643 332 22223333444557788
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 355 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
+|...++..++ +.|+...|..+..++.+.|+.++|+..+++. ...|+ ...+..+..++...|+.++|+..+++++
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88887777763 3456677777778888888888888888776 34443 5667777777888888888888888888
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 433 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+++|+++..+..++.+|...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888887776543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=7e-15 Score=158.54 Aligned_cols=432 Identities=10% Similarity=0.007 Sum_probs=314.7
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHH-H
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDT--LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN-T 104 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~ 104 (600)
+..|+. .|..++ ...+.|++..|...+.+.++.. |+. .++ .++..+...|+.++|+..+++...|+...+. .
T Consensus 31 p~~~~~-~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 31 PAMADT-QYDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccchhH-HHHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 334442 244333 3467899999999999998764 442 344 8889999999999999999998877444444 3
Q ss_pred H--HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 007530 105 I--IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182 (600)
Q Consensus 105 l--i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 182 (600)
+ ...|...|++++|+++|+++.+. .|.|...+..++..+...++.++|.+.+..+.+.. |+...+-.++..+..
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~ 181 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHh
Confidence 3 45778889999999999999998 46667778888889999999999999999998863 445555555555555
Q ss_pred cCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-----Hc
Q 007530 183 CGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI------SSVICAC-----AG 248 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a~-----~~ 248 (600)
.++..+|.+.++++.+ | +...+..+..+..+.|-...|+++..+-... +.|...-. ...+..- ..
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 6667669999999875 3 5677888889999999999999877653211 11111111 1111000 01
Q ss_pred cCch---HHHHHHHHHHHHh-C-CCCchhH-HHHH---HHHHHhhCCHHHHHHHHhcCCCc----CHhHHHHHHHHHHhc
Q 007530 249 LAAL---IQGKQVHAVLCKT-G-FGSNMFA-ASSL---VDMYAKCGCVVDAYFVFSGIEEK----NVVLWNTMISGFSRH 315 (600)
Q Consensus 249 ~g~~---~~a~~~~~~~~~~-~-~~~~~~~-~~~l---~~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~ 315 (600)
..++ +.|..-++.+... + .++.... ..+. +-++.+.|+..++++.|+.+... -..+--++..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 1223 3344444444431 2 2322222 2333 34567889999999999999843 234566788999999
Q ss_pred CChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC----------Cc--c-HHHHH
Q 007530 316 ARSVEVMILFEKMQQAG-----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV----------LP--N-VFHYS 377 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~p--~-~~~~~ 377 (600)
+++++|+.+++.+.... ..++......|..++...+++++|..+++.+.+.... .| | ...+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999987642 1223344578899999999999999999999752220 12 2 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 378 CMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
.++..+.-.|++.+|++.++++ .. +-|...+..+...+...|...+|++.++.+..++|++..+....+.++...|+|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 5677888999999999999988 22 347889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCC
Q 007530 456 EEVARARKLIRDSE 469 (600)
Q Consensus 456 ~~a~~~~~~m~~~~ 469 (600)
++|..+.+...+..
T Consensus 501 ~~A~~~~~~l~~~~ 514 (822)
T PRK14574 501 HQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999988887654
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.7e-16 Score=167.22 Aligned_cols=312 Identities=12% Similarity=0.000 Sum_probs=156.2
Q ss_pred HHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHH
Q 007530 78 YSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154 (600)
Q Consensus 78 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a 154 (600)
+.+.|++++|..+++.... .+...+..++.+....|++++|+..|+++... .|.+...+..+...+...|+.+.|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHH
Confidence 3344555555555544321 12333334444444455555555555555554 233444455555555555555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007530 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231 (600)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 231 (600)
...++.+++..+. +..++..+...|...|+.++|...++.+.. | +...+..+ ..+.+.|++++|+..++.+....
T Consensus 130 i~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 130 ADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555554222 344455555555555555555555544321 1 22222222 22455555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH----HHHHHhcCCC---cCHhH
Q 007530 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD----AYFVFSGIEE---KNVVL 304 (600)
Q Consensus 232 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~----A~~~~~~~~~---~~~~~ 304 (600)
..++......+..++...|++++|...+..+++.. +.+...+..+...|...|++++ |...|++..+ .+...
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a 286 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI 286 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence 22233333333445555555566655555555543 3345555555666666666553 4555554432 23445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDI 382 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~ 382 (600)
+..+...+.+.|++++|+..+++.... .|+ ......+..++...|++++|...++.+.+. .|+. ..+..+..+
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~a 361 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 556666666666666666666666553 233 334444555566666666666666665432 2322 222233445
Q ss_pred HHhcCCHHHHHHHHHcC
Q 007530 383 LGRAGLIHEAYDLILNM 399 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m 399 (600)
+...|+.++|...|++.
T Consensus 362 l~~~G~~deA~~~l~~a 378 (656)
T PRK15174 362 LLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 56666666666666554
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=3.2e-15 Score=161.25 Aligned_cols=387 Identities=9% Similarity=-0.044 Sum_probs=286.1
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCC
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGR 114 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 114 (600)
..-..+...|+++.|...+...++. .|++..|..+..+|.+.|++++|++.++...+ .+...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4455667889999999999998864 57888899999999999999999999997654 356689999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC----------------------------
Q 007530 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM---------------------------- 166 (600)
Q Consensus 115 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------- 166 (600)
+++|+.-|......+ +.+......++..... ..+........+...
T Consensus 210 ~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 210 YADALLDLTASCIID--GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 999999887765543 1111111111111110 001111111111100
Q ss_pred -CCChhHHHHHHHHH------HHcCCHHHHHHHHccCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 007530 167 -DRNVFVGTALLDVY------AKCGLISDASRVFESMPE------RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233 (600)
Q Consensus 167 -~~~~~~~~~li~~y------~~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 233 (600)
..+......++..+ ...+++++|.+.|+...+ .+...|+.+...+...|++++|+..|++.... .
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~ 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--D 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 00000011111111 123678999999987764 24567888899999999999999999998875 4
Q ss_pred CC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHH
Q 007530 234 YN-QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMI 309 (600)
Q Consensus 234 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 309 (600)
|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 54 5578888888999999999999999998875 55688899999999999999999999998764 3567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH--------HHHHHHHH
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV--------FHYSCMID 381 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~ 381 (600)
..+.+.|++++|+..|++..+. .+-+...+..+...+...|++++|+..|+...+. .|+. ..++....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHH
Confidence 8999999999999999999875 2334678888899999999999999999998643 2321 11222233
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+...
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 344579999999999885 44554 56789999999999999999999999999877543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.3e-14 Score=159.74 Aligned_cols=432 Identities=8% Similarity=-0.040 Sum_probs=305.7
Q ss_pred CCCCCCHhHHHHH-HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHccCCCCCcchHHH
Q 007530 27 NANATELSTLQAT-LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK-CGLISGARKVFDEMPQRCIVSWNT 104 (600)
Q Consensus 27 ~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~ 104 (600)
....|+..++... .+.+...++++.+..++..+.+.+ +.+......|-.+|.. .++ +.+..+++...+.|...+..
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~a 252 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRIT 252 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHH
Confidence 3344445545554 788888899888999998888876 3444445555566666 355 77777766544456777777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHH--------------------------------------------
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS-------------------------------------------- 140 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~-------------------------------------------- 140 (600)
+...|.+.|+.++|.++++++...-.-.|...++..
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777777777776442100011111110
Q ss_pred -------------------------------------------------HHHHHhcCCChHHHHHHHHHHHHh-C-CCCC
Q 007530 141 -------------------------------------------------VLCACAAKRDVFECKQLHVFALKA-A-MDRN 169 (600)
Q Consensus 141 -------------------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~ 169 (600)
+.-.....|+.++|.+++...... + -..+
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 001112234444555555554442 1 1123
Q ss_pred hhHHHHHHHHHHHcCC---HHHHHHHHc-------------------------cCCC---C--CHHHHHHHHHHHHhCCC
Q 007530 170 VFVGTALLDVYAKCGL---ISDASRVFE-------------------------SMPE---R--NEVTWSSMVAGFVQNEL 216 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~---~~~A~~~f~-------------------------~m~~---~--d~~~~~~li~~~~~~g~ 216 (600)
....+-|+..|.+.+. ..+|..+-. .... + +...|..+...+.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 4455577788877766 233322211 1111 2 55677777777776 78
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 217 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
.++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|+.++|...|++
T Consensus 492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88999988877664 477665555566667899999999999987654 44445566778889999999999999988
Q ss_pred CCCcCHhHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-c
Q 007530 297 IEEKNVVLWNT---MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-N 372 (600)
Q Consensus 297 ~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~ 372 (600)
..+.++..++. +.......|++++|+..+++..+. .|+...+..+..++.+.|++++|+..++...+. .| +
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~ 642 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNN 642 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC
Confidence 77543333333 333344559999999999999874 678888999999999999999999999999743 44 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|++..+....++...
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 678888888999999999999999987 4445 57889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCC
Q 007530 451 ANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~~ 470 (600)
+..+++.|.+.+++.-.-++
T Consensus 723 ~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 723 QRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHhhcCc
Confidence 99999999998877665543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=3.1e-13 Score=145.96 Aligned_cols=387 Identities=13% Similarity=0.061 Sum_probs=280.2
Q ss_pred HHhcCChHHHHHHHccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHH
Q 007530 78 YSKCGLISGARKVFDEMPQRCIV---SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154 (600)
Q Consensus 78 y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a 154 (600)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... .+.+......+...+...|+++.|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45899999999999998753332 2348889999999999999999998732 233344444446688889999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007530 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE--VTWSSMVAGFVQNELYEEALILFRRAQVLGL 232 (600)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 232 (600)
.++++.+++..+. +..++..++..|.+.++.++|++.++++...+. ..+-.++..+...++..+|++.++++.+..
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 9999999998765 577788889999999999999999999987443 344333333334566666999999999863
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHH-----HhhCC---HHHHHHHHhcCCC
Q 007530 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN-----MFAASSLVDMY-----AKCGC---VVDAYFVFSGIEE 299 (600)
Q Consensus 233 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~y-----~~~g~---~~~A~~~~~~~~~ 299 (600)
+-+...+.....+..+.|....|.++...-...--+.+ ......++..- ....+ .+.|..-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 33566667888888999988888776554221100000 00000111100 01112 2233333333221
Q ss_pred -----cCH-h----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC-
Q 007530 300 -----KNV-V----LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN- 368 (600)
Q Consensus 300 -----~~~-~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 368 (600)
|.. . ..--.+.++...|+..++++.|+.|...|.+.-..+-..+..+|...+.+++|..+++.+....+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 211 1 22234667888999999999999999988664455778899999999999999999999875432
Q ss_pred ---CCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCC--------------CC--CHH-HHHHHHHHHHHcCChHHHHHHH
Q 007530 369 ---VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF--------------DA--TAS-MWGSLLASCRNYRNLELAEIAA 428 (600)
Q Consensus 369 ---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~ 428 (600)
..++......|..+|...+++++|..+++++.- .| |-. ....++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233555567899999999999999999988721 12 222 3344566677899999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
++++...|.|+.....++.++...|...+|...++.....
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999776544
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.2e-12 Score=123.45 Aligned_cols=390 Identities=14% Similarity=0.119 Sum_probs=254.8
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHH--HHhcCChHHH-HHHHccC-----------------
Q 007530 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGA-RKVFDEM----------------- 94 (600)
Q Consensus 35 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--y~~~g~~~~A-~~~~~~~----------------- 94 (600)
+=+.+++. ...|.+.++--+++.|...|.+.+..+--.|+.. |....++.-| ++-|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44445543 3467888999999999999988777776666543 2222222111 2222223
Q ss_pred ------CCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 007530 95 ------PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168 (600)
Q Consensus 95 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 168 (600)
..+...+|..||.|+++--..+.|.++|++-.... .+.+..+||.++.+-+- ..++++..+|....+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 23466789999999999999999999999998877 78899999999987553 34488999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHc----cCC----CCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHc--C--CCC-
Q 007530 169 NVFVGTALLDVYAKCGLISDASRVFE----SMP----ERNEVTWSSMVAGFVQNELYEE-ALILFRRAQVL--G--LEY- 234 (600)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~----~m~----~~d~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~p- 234 (600)
|..++|++++..++.|+++.|.+.+- +|. +|...+|..+|..+.+.++..+ |..++.++++. | ++|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999999988776544 343 4788899999998888877644 45555555432 2 333
Q ss_pred ---CHHHHHHHHHHHHccCchHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhhCCHHHHHHHHhcCCC----c
Q 007530 235 ---NQFTISSVICACAGLAALIQGKQVHAVLCKTG----FGSN---MFAASSLVDMYAKCGCVVDAYFVFSGIEE----K 300 (600)
Q Consensus 235 ---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~ 300 (600)
|..-|.+.++.|.+..+.+.|.+++..+.... +.|+ ..-|..+....+....++.-...|+.|.. |
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 45667888889999999999999887765421 2332 33456677777888888888888888764 5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-C-------------------HHHHHH-H
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG-M-------------------VEKGKS-Y 359 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~-------------------~~~a~~-~ 359 (600)
+..+-..++.+..-.|.++-.-++|.+|+..|..-+...-.-++...++.. . +.++.+ -
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666677777777877777777777777664333333333333333322 0 000000 0
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-------PFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 360 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
-.++ +...+ .....++..-.+.|.|..++|.+++.-. |..|.......|+.+....++...|..+++-+.
T Consensus 512 ~~R~-r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 512 PIRQ-RAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHH-HhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0111 11122 2335566666667777777776666433 333333334445555555555555555555554
Q ss_pred c
Q 007530 433 G 433 (600)
Q Consensus 433 ~ 433 (600)
.
T Consensus 589 ~ 589 (625)
T KOG4422|consen 589 A 589 (625)
T ss_pred H
Confidence 3
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=5e-13 Score=138.34 Aligned_cols=430 Identities=13% Similarity=0.040 Sum_probs=258.6
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHccCCC--CC--cchHHHHHH
Q 007530 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNND--TLTSNILINFYSKCGLISGARKVFDEMPQ--RC--IVSWNTIIG 107 (600)
Q Consensus 34 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~ 107 (600)
+.++.|..-+--.|+.+.+..+...++....... ...|=-+.++|...|+++.|...|.+..+ +| +..+--|..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 3444455555555555555555555554431111 12233445555555666666655554432 11 223334555
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
.|.+.|+.+.|...|+...+. .|.+..|...+...|+..+ ..+.|..+....++.- +.|...|-.+..+|-..
T Consensus 351 m~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 556666666666666655554 3444455555555555443 3344444444444443 22444555554444433
Q ss_pred CCH------HHHHHHHcc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHH------HHHHHHHHHH
Q 007530 184 GLI------SDASRVFES-MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL---GLEYNQF------TISSVICACA 247 (600)
Q Consensus 184 g~~------~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~a~~ 247 (600)
.-+ ..|..++.. +...-+...|.+...+...|++++|...|...... ...+|.. +--.+....-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 222 222222211 11234556666666677777777777777766543 1223321 1122333445
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
..++.+.|.++|..+++.. +.-+..|--|.-+.-..+...+|...+....+ .++..|+.+...+.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 5667777777777777653 22222222233233333556677777776553 5677787777788888888888887
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 325 FEKMQQAG-LHPNEQTYISVLSACSH------------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 325 ~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
|....+.- ..+|.....+|.+.|.. .+..++|++.|.++++.. +.+...-|-+.-.++..|++.+
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchH
Confidence 76665542 33677777777776542 245678888888887432 3477777778888999999999
Q ss_pred HHHHHHcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 392 AYDLILNMP--FDATASMWGSLLASCRNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 392 A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
|.++|.+.. ......+|-.+...|...|++..|.++|+..++ ...+++.....|+.++.++|++.+|.+.......
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999872 233567899999999999999999999999987 3345677888999999999999999998877665
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
..
T Consensus 745 ~~ 746 (1018)
T KOG2002|consen 745 LA 746 (1018)
T ss_pred hC
Confidence 43
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2e-12 Score=133.96 Aligned_cols=452 Identities=11% Similarity=0.043 Sum_probs=300.6
Q ss_pred HHHHHHHHh--ccCCchhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---------------
Q 007530 36 LQATLQSCA--RERAPVRGKVCHAKIIGM--GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--------------- 96 (600)
Q Consensus 36 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------- 96 (600)
+..+.+||. ..+++..|..+|...+.. ...||+.+... ..+.++|+.+.|+..|.+..+
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV 242 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 444556665 456788888888876554 34566544322 445567777777666665543
Q ss_pred -------------------------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCC-CCChhhHHHHHHHHhcCCC
Q 007530 97 -------------------------RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT-PYSEFTVSSVLCACAAKRD 150 (600)
Q Consensus 97 -------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~p~~~t~~~ll~~~~~~~~ 150 (600)
.|++..|.|..-|.-.|+++.+..+...+...-.. +.-..+|..+.+++-..|+
T Consensus 243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 35556677777777778888888888777664200 1123457788888888888
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCC----CHHHHHHH
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNE----LYEEALIL 223 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g----~~~~A~~~ 223 (600)
++.|.++|.+..+.....-+..+--|..+|.+.|+++.+...|+.+.+ | +..+...+...|+..+ ..++|..+
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 888888888777764332244455678888888888888888888764 2 4556666777777665 44566666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC
Q 007530 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL----CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299 (600)
Q Consensus 224 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 299 (600)
+.+....- +-|...|..+...+-...-+ .....+..+ ...+..+.+.+.|.+...+...|+++.|...|.....
T Consensus 403 l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 65555432 33556666666555443332 225444443 3456667888899999999999999999988876542
Q ss_pred -------cCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 300 -------KNV------VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 300 -------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+|. .+-..+...+-..++.+.|.+.+..+.+. .|+-+ .|..++......+...+|...+.....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 222 12222344555667888999999998885 46544 344444233345778889999988875
Q ss_pred hcCCCccHHHHHHHHHHHHhcCCHHHHHHH----HHcCCCCCCHHHHHHHHHHHHH------------cCChHHHHHHHH
Q 007530 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDL----ILNMPFDATASMWGSLLASCRN------------YRNLELAEIAAK 429 (600)
Q Consensus 366 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~ 429 (600)
...-.|+ .++.+...+.+...+..|.+- +.+....+|+.+.-+|.+.|.. .+..+.|++.|.
T Consensus 559 ~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~ 636 (1018)
T KOG2002|consen 559 IDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG 636 (1018)
T ss_pred cccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 4444444 566667778887777777763 4444345788888888876643 245789999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc-ccCcchHHHHHHH
Q 007530 430 QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-RNHPRIAEIYSKL 497 (600)
Q Consensus 430 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l 497 (600)
++++.+|.|..+-+.++-+++..|++.+|..+|.+.++....- .-.|+-+.++ .-.++...+.+..
T Consensus 637 kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 637 KVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999998865421 2245544433 3345555555433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=4.6e-13 Score=126.98 Aligned_cols=411 Identities=10% Similarity=0.020 Sum_probs=270.1
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHccCCC--CC------cchHHHHHHH
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS-NILINFYSKCGLISGARKVFDEMPQ--RC------IVSWNTIIGS 108 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~ 108 (600)
.+.+-|.......+|...++.+++...-|+.-.. -.+-+.|.+.+.+..|+++++.... |+ +...|.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555555667788888888887766664332 2344667788888999988864432 22 2356666677
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------------CChhHHHHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD------------RNVFVGTAL 176 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~l 176 (600)
|.+.|+++.|+..|+...+. .||-.+-..++-++...|+.++.++.|..++..-.. |+....|--
T Consensus 286 fiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred EEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 89999999999999998885 477776666666666789999999999998875322 222222221
Q ss_pred H-----HHHHHcCC--HHHHH----HHHccCCCCCHH---HHH----------H--------HHHHHHhCCCHHHHHHHH
Q 007530 177 L-----DVYAKCGL--ISDAS----RVFESMPERNEV---TWS----------S--------MVAGFVQNELYEEALILF 224 (600)
Q Consensus 177 i-----~~y~~~g~--~~~A~----~~f~~m~~~d~~---~~~----------~--------li~~~~~~g~~~~A~~~~ 224 (600)
| .-+-+... -++++ ++..-...||-. -|. - -...|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1 11222111 12221 222222222211 011 0 123478999999999999
Q ss_pred HHHHHcCCCCCHHHHH--HHHHH---------------------------H-------HccCchHHHHHHHHHHHHhCCC
Q 007530 225 RRAQVLGLEYNQFTIS--SVICA---------------------------C-------AGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 225 ~~m~~~g~~p~~~t~~--~ll~a---------------------------~-------~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
+-.....-+.-...-+ +++.. . ...|++++|...+.+.+...-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8876543222111111 11111 1 1245677777777777765433
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
-....|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...++..|++++.+.... ++-|...+.-|..
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 3333343 3345667788888888876654 345666666677777778888888888766553 4445677778888
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHH-cCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRN-YRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~-~~~~~~ 423 (600)
.|-+.|+-.+|.+.+-.-- .-++.+.++..-|...|....-+++|..+|++. -++|+..-|..++..|.+ .|++..
T Consensus 601 lydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 8888888888887765432 123447788888888888888899999999887 468999999988887754 799999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
|..+++.+.+..|.+....-.|..++...|.-
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999888888888888877753
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=6.9e-10 Score=110.50 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=299.3
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (600)
.+|+.-...|.+.+.++-|..+|...++. .|-+...|......--..|..+....+++.++..-+. ....|-....-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence 46777777788888888888888888886 6667778888887777888888888899888887443 55667777777
Q ss_pred HHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 007530 180 YAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256 (600)
Q Consensus 180 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 256 (600)
+...|++..|+.++++.-+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---+++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 8888999999988776654 3667888888888999999999999988776 4567766666666666788999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 333 (600)
+++++.++. ++.-...|-.+.+.+-+.++++.|++.|..-.+ | .+..|-.+...--+.|...+|..+|++....+
T Consensus 672 rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 672 RLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 999888876 355567788888999999999999999887654 3 45678888877788889999999999988764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007530 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413 (600)
Q Consensus 334 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 413 (600)
+-|...|...+..-.+.|+.+.|..+..+..++ .+.+...|..-|.+..+.++-..+.+.+++-. .|+.+.-++..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHH
Confidence 346778888999999999999999999888764 35567788888888888888888888888764 45566667777
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEc
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~ 482 (600)
.+....+++.|..-|.++++.+|++..++..+-..+...|.-++-.++++...... |..|-.|..+.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 78888999999999999999999999999999999999999999999998876543 55566776554
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.8e-10 Score=110.50 Aligned_cols=414 Identities=10% Similarity=0.066 Sum_probs=314.6
Q ss_pred HhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHH
Q 007530 79 SKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (600)
...+++..|+.+|+.... ++...|---+..=.++.+...|..++++.+.. +|--...|.--+-.--..|++..|+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345678889999998764 68888999999999999999999999999885 3322334444555556789999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 007530 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233 (600)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 233 (600)
++|+.-.+ ..|+...|++.|+.=.+-..++.|..+++... .|++.+|--....=.++|+...|..+|....+. -
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 99998876 58899999999999999999999999999854 699999999999999999999999999887653 1
Q ss_pred CCHHHHHHHHHHH----HccCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHH---hcC-----CC
Q 007530 234 YNQFTISSVICAC----AGLAALIQGKQVHAVLCKTGFGSN--MFAASSLVDMYAKCGCVVDAYFVF---SGI-----EE 299 (600)
Q Consensus 234 p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~---~~~-----~~ 299 (600)
.|...-..+..++ .....++.|.-++..+++.= +.+ ...|..+...--+-|+......+. +++ ..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2233333333344 45667899999999988762 333 556666666656666654444332 222 22
Q ss_pred ---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCCHHHHHHHHHHHHHh
Q 007530 300 ---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-------TYISVLSAC---SHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 300 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~ 366 (600)
-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+++.+.++++..++
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 25567888888888889999999999999886 666321 232222222 347899999999999874
Q ss_pred cCCCc-cHHHHHHHHHHHH----hcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 367 HNVLP-NVFHYSCMIDILG----RAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 367 ~~~~p-~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
+.| ...++..+--+|+ ++.++..|.+++... +..|...++...+..-.+.++++....++++.++..|.+..
T Consensus 395 --lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 395 --LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred --hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 445 5566666655554 678999999999765 88899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEE-EEEcCcccCcchHHHHHHHHHHHHH
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW-VEIKGKRNHPRIAEIYSKLEKLVEE 503 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~l~~l~~~ 503 (600)
++.-.+..-...|+++.|..+|+...+....-.|...| ..|+--...++.+.+.+..+++++.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999998876655555555 2344445556666666555555544
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=8.6e-12 Score=126.62 Aligned_cols=287 Identities=12% Similarity=0.003 Sum_probs=189.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (600)
.|++++|.+.+....+.. +-....+.....+....|+.+.+.+.+.++.+...++...........+...|+.++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777655542 111223333345557788888888888888775433333333344678888889988888
Q ss_pred HHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 192 VFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 192 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
.++...+ .+......+...|.+.|+|++|.+++..+.+.+..++. ....+-.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 8888765 35677888888888889999999888888877644322 1111000
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
..+..++....+..+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .||.... ++.
T Consensus 230 ---~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 230 ---QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 0111122222222334444555555542 46667777778888888888888888887763 4444221 233
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a 424 (600)
+....++.+++.+..+...+.+ +-|...+.++...+.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3345588888888888876543 234556777888888888888888888876 5668888888888888888888888
Q ss_pred HHHHHHHhcC
Q 007530 425 EIAAKQLFGM 434 (600)
Q Consensus 425 ~~~~~~~~~~ 434 (600)
.+.+++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 8888888764
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=4.3e-10 Score=111.95 Aligned_cols=419 Identities=14% Similarity=0.046 Sum_probs=344.4
Q ss_pred hchhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHcc
Q 007530 16 FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN--DTLTSNILINFYSKCGLISGARKVFDE 93 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~ 93 (600)
.....+.+.+.+|...+...|..=..+|-+.|.+-.++.+...++.-|+.. -..+++.-...|.+.+.++-|+.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 445667888889999999999999999999999999999999999888753 356888888999999999999999987
Q ss_pred CCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh
Q 007530 94 MPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170 (600)
Q Consensus 94 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 170 (600)
..+ .+...|...+..--..|..++-..+|++.... .|-....|....+-.-..|++..|+.++..+.+..+. +.
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 764 46678888887777789999999999999987 6767777777778888899999999999999998655 78
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF-TISSVICACA 247 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~ 247 (600)
..|-+-+..-.....++.|+.+|.+... ++...|..-+..---.++.++|++++++..+. -|+-. .|..+...+-
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 8899999999999999999999998764 56777877777777789999999999988774 45544 5666777788
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
+.++++.|+..|..-.+. ++..+..|-.|.+.--+.|.+-.|+.+|++..- .|...|-..|..-.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 888888888887765554 355677888999999999999999999997763 4778999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC
Q 007530 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA 403 (600)
Q Consensus 325 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 403 (600)
..+..+. .+-+...|..-|....+.++-......+.+. .-|..+.-++..++-...++++|.+.|.+. ...|
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9988876 4556677777777666666644444444333 345667777888899999999999999887 5556
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 404 T-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 404 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
| ..+|.-+...+..+|.-+.-.+++.+...-+|.....+...+.
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 5 5799999999999999999999999999999988776665543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.1e-14 Score=139.24 Aligned_cols=254 Identities=14% Similarity=0.102 Sum_probs=110.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISS-VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
...+.+.|++++|++++++-.....+|+...|-. +...+...++.+.|...+..+...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 3444455555555555543332221233333322 22333445556666666666655442 244455556665 57777
Q ss_pred HHHHHHHHhcCC--CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 287 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
+++|.+++...- .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888877776553 2456677788888889999999999999977543 3456677888888899999999999999999
Q ss_pred HHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 364 VKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 364 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
++. .| +......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 854 45 4677888999999999999988777665 12345678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
....++.++...|+.++|.+++.+.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987653
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=3.4e-11 Score=124.22 Aligned_cols=330 Identities=15% Similarity=0.147 Sum_probs=191.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 007530 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 192 (600)
|+.++|.+++.+.++. .|-+...|.+|...+-..|+.+++...+-.+--.. +.|...|-.+.....+.|.+++|.-.
T Consensus 153 g~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 6666666666666655 34455556666666666666555554433222222 22445555555655666666666666
Q ss_pred HccCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 193 FESMPERNE---VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF----TISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 193 f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
|.+..+.++ ...---+..|-+.|+...|++.|.++.+...+.|.. +.-.++..+...+.-+.|.+.+......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 655544222 222222344555566666666666555432111111 1112222333333334444433333331
Q ss_pred -CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------
Q 007530 266 -GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA------------- 331 (600)
Q Consensus 266 -~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------- 331 (600)
+-..+ ...+|.++..|.....++.|......+...
T Consensus 310 ~~~~~~-------------------------------~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 310 EKDEAS-------------------------------LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred cccccc-------------------------------ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 11122 234445555555555555555555554441
Q ss_pred --------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCHHHHHHH
Q 007530 332 --------------GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILGRAGLIHEAYDL 395 (600)
Q Consensus 332 --------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 395 (600)
++.++... .-+.-+..+....+....+..... ...+.| +...|.-+.++|...|++.+|.++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 12222222 122223344444444444444443 335333 577889999999999999999999
Q ss_pred HHcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 007530 396 ILNM---PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 396 ~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 472 (600)
|..+ +...+...|--+...+...|.+++|.+.+++++.+.|++..+...|+.+|.+.|+.++|.+++..+..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9988 2233578999999999999999999999999999999999999999999999999999999998876333222
Q ss_pred CCceEE
Q 007530 473 EKSKSW 478 (600)
Q Consensus 473 ~~~~~~ 478 (600)
.+.+.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 344555
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.6e-10 Score=110.67 Aligned_cols=350 Identities=11% Similarity=0.063 Sum_probs=222.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC--hhHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN--VFVGTA 175 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 175 (600)
|...+....-.+-+.|....|.+.|...... .|.+-..|..|...+. +.+.+. .... |.+.| ...---
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit---~~e~~~----~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELIT---DIEILS----ILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhc---hHHHHH----HHHh-cCcccchHHHHHH
Confidence 4333333334455667777777777776654 4444444444443332 222221 1111 12211 111122
Q ss_pred HHHHHHHcCCHHHHHHHHccCCC---C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHcc
Q 007530 176 LLDVYAKCGLISDASRVFESMPE---R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGL-E-YNQFTISSVICACAGL 249 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~---~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~~~t~~~ll~a~~~~ 249 (600)
+..+|-.....+++..-.+.... + +...-+....+.-.+.++++|+.+|+++.+... + -|..||+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34455555555555544443332 1 112222223334456778888888888776521 1 1556777776543322
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007530 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFE 326 (600)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 326 (600)
..+.---+....+- +--+.+...+.+-|+-.++.++|...|++..+ .....|+.|..-|....+...|++-++
T Consensus 313 skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22211111111111 22344566677778888888888888887664 356789989899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC
Q 007530 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNMP--FDA 403 (600)
Q Consensus 327 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p 403 (600)
..++-. +-|-..|-.|..+|.-.+...-|.-+|++.. .++| |...|.+|.+.|.+.++.++|.+-|++.- ...
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 988752 3477788999999999999999999999886 3455 78899999999999999999999998872 233
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFG-------MEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
+...+..|...+...++.++|.+.+++-++ .+|....+...|+.-+.+.+++++|...-...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 557888899999999999999999998876 44444455667888899999999998765544
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=1.9e-11 Score=124.82 Aligned_cols=291 Identities=12% Similarity=0.019 Sum_probs=194.5
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYS-EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
...|+++.|.+.+.+..+. .|+ ...+.....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3578999999988877664 233 334455566777789999999998888776544444455556778888888888
Q ss_pred HHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 189 ASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 189 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
|...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------------------
Confidence 8888888765 256677888888888888888888888888776432221111111110
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY-- 340 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-- 340 (600)
..+++.-......+...+.+...++ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 233 ---------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 233 ---------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 0011111111223334444444443 37777888888888888888888888888875 3444321
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHH
Q 007530 341 -ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN---MPFDATASMWGSLLASCR 416 (600)
Q Consensus 341 -~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~~~ 416 (600)
..........++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 1111222345777888888888776544444325666788888889999999998883 255788888888888888
Q ss_pred HcCChHHHHHHHHHHhc
Q 007530 417 NYRNLELAEIAAKQLFG 433 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~ 433 (600)
..|+.++|.+++++.+.
T Consensus 382 ~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 89999999999888765
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.5e-10 Score=109.57 Aligned_cols=353 Identities=10% Similarity=0.009 Sum_probs=227.8
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP----QRCIVSWN 103 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~ 103 (600)
-.|-+..|++.++.+.++-...+.|++++..-.......+..++|.+|.+-+-.-. .++..+|. .||..|+|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 33445678888998888888888888888877766667888888888865433222 45555554 48999999
Q ss_pred HHHHHHHcCCChhH----HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHH-HHHHHHHHHHh--C--C----CCCh
Q 007530 104 TIIGSYTTNGREQE----AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-CKQLHVFALKA--A--M----DRNV 170 (600)
Q Consensus 104 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~--g--~----~~~~ 170 (600)
+++++.++.|+++. |++++.+|++-| +.|...+|..++..+.+.++..+ +..+...+... | + +.|.
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 99999999888764 566778888888 88999999888888887777644 44444444432 2 2 2244
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPER-----------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 239 (600)
..+..-++.|....+.+-|.++-.-.... ...-|..+....++....+.-+..|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 55667777888888888888775443321 2234556677778888888888888888877777888888
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHh--cCC
Q 007530 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR--HAR 317 (600)
Q Consensus 240 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~ 317 (600)
..++.|....+.++...+++..++..|.........-++..+++..- .|+...-.-+=..+++ ..-
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHH
Confidence 88999888888888888888888887754444443333333333220 1221111111111111 001
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH---HHHHHhcCCHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM---IDILGRAGLIHEAYD 394 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~ 394 (600)
.+.....-.+|.+..+. ....+.++-.+.+.|..++|.++|..+.++.+-.|.....++| ++.-.+......|..
T Consensus 505 ~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 11112223344444333 3445555556778888888888888886555544544455544 444456667777777
Q ss_pred HHHcC
Q 007530 395 LILNM 399 (600)
Q Consensus 395 ~~~~m 399 (600)
.++-|
T Consensus 583 ~lQ~a 587 (625)
T KOG4422|consen 583 VLQLA 587 (625)
T ss_pred HHHHH
Confidence 77666
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=2.4e-10 Score=116.73 Aligned_cols=286 Identities=11% Similarity=-0.074 Sum_probs=171.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--CC--HHHHHHHHHHHHhCCCHHHHHH
Q 007530 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RN--EVTWSSMVAGFVQNELYEEALI 222 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d--~~~~~~li~~~~~~g~~~~A~~ 222 (600)
..|+++.|++.+....+....| ...+-....++.+.|+.+.|.+.|.+..+ |+ ....-.....+.+.|+++.|.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3466666666666555543221 22223334555566666666666665422 22 1222233555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH
Q 007530 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302 (600)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 302 (600)
.++++.+.. +-+...+..+...+...|+++.+.+++..+.+.+..+.......-.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~------------------------ 229 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ------------------------ 229 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH------------------------
Confidence 666666543 2233445555555666666666666666665554221111111000
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH-HH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAG---LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SC 378 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~ 378 (600)
..| .++...+..+++.+.+..+.... .+.+...+..+...+...|+.++|.+.+++..+.. |+.... -.
T Consensus 230 ~a~----~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~ 302 (409)
T TIGR00540 230 KAE----IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLP 302 (409)
T ss_pred HHH----HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhH
Confidence 111 11122233333444555554432 11377788888899999999999999999998643 433210 01
Q ss_pred HHHHH--HhcCCHHHHHHHHHcC-CCCCC-H--HHHHHHHHHHHHcCChHHHHHHHH--HHhcCCCCCcchHHHHHHHHH
Q 007530 379 MIDIL--GRAGLIHEAYDLILNM-PFDAT-A--SMWGSLLASCRNYRNLELAEIAAK--QLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 379 li~~~--~~~g~~~~A~~~~~~m-~~~p~-~--~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~ 450 (600)
++..+ ...++.+.+.+.+++. ...|+ + ....++...+.+.|++++|.+.++ ...+..|++. .+..++.++.
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~ 381 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFD 381 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHH
Confidence 33333 3357788888888765 33343 3 567789999999999999999999 5777888754 5779999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007530 451 ANRRWEEVARARKLIR 466 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~ 466 (600)
+.|+.++|.+++++..
T Consensus 382 ~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSL 397 (409)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999998754
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=4.7e-11 Score=121.28 Aligned_cols=274 Identities=9% Similarity=-0.001 Sum_probs=196.3
Q ss_pred cCCHHHHHHHHccCCCC--CHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCchHHHHH
Q 007530 183 CGLISDASRVFESMPER--NEVTWSSM-VAGFVQNELYEEALILFRRAQVLGLEYNQFTIS--SVICACAGLAALIQGKQ 257 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~~--d~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~ 257 (600)
.|+++.|++.+...++. ++..+..+ .....+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765543 22223222 34446778888888888887653 45543332 23456677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC---H--------hHHHHHHHHHHhcCChHHHHHHHH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN---V--------VLWNTMISGFSRHARSVEVMILFE 326 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~~ 326 (600)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 5567778888888888888888888887776421 1 133344444444555666677777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-C
Q 007530 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-T 404 (600)
Q Consensus 327 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 404 (600)
.+.+. .+.+......+..++...|+.++|.+.++...+ ..|+.... ++.+....++.+++.+.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345677888889999999999999999998874 24554322 233334559999999988877 3345 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+....++...|...+++++|...++++++..|++ ..+..++.++.+.|+.++|...+++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6678889999999999999999999999999986 467899999999999999999988654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=8.5e-12 Score=124.74 Aligned_cols=243 Identities=13% Similarity=0.069 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHH-HHH
Q 007530 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGSNMFAASSLVDMYAKCGCVVD-AYF 292 (600)
Q Consensus 216 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~-A~~ 292 (600)
+.++|+..|...... +.-+......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+.- |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 355666666653322 22233444455566666666666666666665532 11234444444332221111111 111
Q ss_pred HHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 007530 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371 (600)
Q Consensus 293 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 371 (600)
+. .+....+.+|-++...|.-+++.+.|++.|++... +.| ...+|+.+..-+.....+|.|...|+..+ ..
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 11 12233456677777777766777777777766665 344 45556555555555666666666666554 23
Q ss_pred cHHHHHHH---HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 372 NVFHYSCM---IDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 372 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
|..+|+++ .-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.|+|++++++++.++|.++-.-..-+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 33455543 33456666777776666665 4444 3455555566666666677777777777777776666666666
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 007530 447 NIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 447 ~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.++...+++++|...++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 666666777777766666654
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=3.5e-09 Score=109.68 Aligned_cols=521 Identities=13% Similarity=0.095 Sum_probs=342.6
Q ss_pred HHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccC---CCCCcchHHHHHHHHHcCCChhHH
Q 007530 42 SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM---PQRCIVSWNTIIGSYTTNGREQEA 118 (600)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
.+++ |+++.|..++..+++.. +.....|-.|...|-..|+.+++...+--. ...|..-|-.+-.-..+.|.+++|
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3444 99999999999999876 667889999999999999999998877543 345778899999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHHHcCCHHHHHHHHc
Q 007530 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA----LLDVYAKCGLISDASRVFE 194 (600)
Q Consensus 119 ~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~ 194 (600)
.-.|.+.++. -|++...+---...|-+.|+...|...+.++....++.|..-... .+..|...++-+.|.+.++
T Consensus 227 ~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998 477777777778889999999999999999998865444333333 4566777788899999888
Q ss_pred cCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH----------------------H----HHH
Q 007530 195 SMPE--R---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI----------------------S----SVI 243 (600)
Q Consensus 195 ~m~~--~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~----~ll 243 (600)
.... . +...+|.++..|.+...++.|......+......+|..-+ . -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7664 2 4557889999999999999999999888762222222111 1 122
Q ss_pred HHHHccCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC----cCHhHHHHHHHHHHhcCC
Q 007530 244 CACAGLAALIQGKQVHAVLCKTG--FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE----KNVVLWNTMISGFSRHAR 317 (600)
Q Consensus 244 ~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~ 317 (600)
-++.+....+....+.....+.. ...+...|.-+.++|...|++.+|..+|..+.. .+...|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33456666677777777777776 344677889999999999999999999998874 367899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH-------HhcCCCccHHHHHHHHHHHHhcCCH
Q 007530 318 SVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMV-------KQHNVLPNVFHYSCMIDILGRAGLI 389 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~g~~ 389 (600)
.++|++.|+..... .|+. ..-..|-..+.+.|+.++|.+.+..+. +..+..|+.....-..+.|...|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999999884 5553 344556667889999999999998853 1223456666666677888889988
Q ss_pred HHHHHHHHcCC--------C-----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH--------hcCCC
Q 007530 390 HEAYDLILNMP--------F-----------------DATASMWGSLLASCRNYRNLELAEIAAKQL--------FGMEP 436 (600)
Q Consensus 390 ~~A~~~~~~m~--------~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~p 436 (600)
++=.+....|- + ........+...+-.+.++....+.....- ..+.-
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 77444333320 1 111112222333333333322222111111 11111
Q ss_pred CCc-chHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCc-----eEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCCc
Q 007530 437 DNA-GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS-----KSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYK 510 (600)
Q Consensus 437 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 510 (600)
++- ..+.-++..+.+.+++++|..+...+.+..+-..+. .-|..+.......+...++..++.++...+.. ..
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~-~~ 701 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY-LD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh-hh
Confidence 111 244467778899999999999988887654321111 11222222233455566665555554432211 11
Q ss_pred cCCccccc-ccc-hhHHhhHhhHHHHHHHHHHccccCCCC-CcEEEE--ecccccCCchhHHHHHhh
Q 007530 511 PETEHDLH-DVE-DSRKQELLIHHSEKLALTFGLMCLCPG-VPIRIM--KNLRICGDCHSFMKFASR 572 (600)
Q Consensus 511 pd~~~~~~-~~~-~~~~~~~l~~h~~~~a~~~~~~~~~~~-~~~~~~--~~~~~c~~~~~a~~~~~~ 572 (600)
|-...... .+. --...+..++|-..++. +.+.+.+ .+++++ -|+-+|+.-..|+..-..
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~---~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRL---LVKNKDDTPPLALIYGHNLFVNASFKHALQEYMR 765 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCccCCcceeeeechhHhhccchHHHHHHHHH
Confidence 11110000 111 01223333566555552 2233333 344433 556777777777765543
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.4e-09 Score=105.29 Aligned_cols=421 Identities=10% Similarity=0.011 Sum_probs=279.0
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHc--cCCCCCcchHHHHHHHHHc
Q 007530 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD--EMPQRCIVSWNTIIGSYTT 111 (600)
Q Consensus 34 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~ 111 (600)
.-+..+++-+.....+..|.-+-+++...+ .|+...--+.++|.-.|..+.|..+.. .+.+.|.........++.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 334445554444555555555555554433 344444445566666666666666654 3445677777777777777
Q ss_pred CCChhHHHHHHH----HHHHc--------CCCCCChhh----HHH-------HHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 007530 112 NGREQEAVALFI----NMLRE--------GKTPYSEFT----VSS-------VLCACAAKRDVFECKQLHVFALKAAMDR 168 (600)
Q Consensus 112 ~g~~~~A~~~~~----~m~~~--------g~~~p~~~t----~~~-------ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 168 (600)
..++++|+.++. .+..- +.+.+|..- -+. -...+....+.++|+..+.+++...
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D--- 171 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD--- 171 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc---
Confidence 777777777776 22110 001111111 001 1123344455666666666655542
Q ss_pred ChhHHHHHHHHHHH--------------------c-CCHHHHHHHHccC----C----------------CCCHHHHHHH
Q 007530 169 NVFVGTALLDVYAK--------------------C-GLISDASRVFESM----P----------------ERNEVTWSSM 207 (600)
Q Consensus 169 ~~~~~~~li~~y~~--------------------~-g~~~~A~~~f~~m----~----------------~~d~~~~~~l 207 (600)
+..+.++...-.. + .+.+.-+.+|+-. . +.++...-.-
T Consensus 172 -~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 172 -AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred -hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 2222222111110 0 0111122222211 0 0133444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 287 (600)
..-+...+++++..+++++..+.. ++....+..-|..+...|+..+-..+-..+++. .|....+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 566778899999999999987652 455555555566777888777666666666665 377788999999999999999
Q ss_pred HHHHHHHhcCCCcC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 288 VDAYFVFSGIEEKN---VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 288 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999766433 468999999999999999999999887664 22223334445556888999999999999886
Q ss_pred HhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 365 KQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNMP--------FDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 365 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
++-| |+...+-+.-.....+.+.+|..+|+..- ..+ -..+|+.|..+|++.+.+++|+..+++.+.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 5666 56667767666777889999999987651 111 3567899999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=8.3e-13 Score=128.02 Aligned_cols=254 Identities=12% Similarity=0.027 Sum_probs=78.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 184 (600)
...+.+.|++++|++++++..... .+|+...| ..+...+...++.+.|.+.++.+.+.+.. ++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 444556666666666664433331 12333333 33333444556666666666666655433 44455555555 5666
Q ss_pred CHHHHHHHHccCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 185 LISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 185 ~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+.++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|......+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777666655432 345556666666777777777777777665432 234555566666666667777777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
+++.. |.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..+.. +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 76654 3345556666666666666665555544433 2344556666666666666666666666666531 23455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
....+..++...|+.++|.++...+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 55566666666666666666665543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.2e-09 Score=101.89 Aligned_cols=324 Identities=12% Similarity=0.061 Sum_probs=193.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHH-HHHHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVAGFV 212 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~-~~~li~~~~ 212 (600)
|.+.+.......-..|....|...+...+.. -+..|.+-+....-.-+.+.+..+-...+..+... =--+..++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 4433333334444556666666665555443 12233333333333344444444444443321111 112334555
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhhCCHH-H
Q 007530 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLVDMYAKCGCVV-D 289 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~y~~~g~~~-~ 289 (600)
.....+++++-.......|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.--.+.++. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 5556777777777776666655554444444455566777888888888777631 114556655543222222222 1
Q ss_pred HHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 007530 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368 (600)
Q Consensus 290 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 368 (600)
|..+++ +.+--+.|..++.+-|.-.++.++|...|++..+. .|. ...|+.+..-|....+...|++-++.++ .
T Consensus 319 A~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---d 392 (559)
T KOG1155|consen 319 AQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---D 392 (559)
T ss_pred HHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---h
Confidence 222222 22223344555566667777778888888877764 343 3455556667777777888888887776 3
Q ss_pred CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 369 VLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 369 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+.| |-..|-.|.++|.-.+...=|+-+|++. ..+| |...|.+|...|.+.++.++|++.+.+++.....+...+..|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 334 6667777778888788877787777776 3444 567788888888888888888888888877666566777788
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 007530 446 SNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 446 ~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+++|.+.++.++|...++.-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888777766654
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=5.5e-09 Score=100.49 Aligned_cols=376 Identities=12% Similarity=0.066 Sum_probs=220.0
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC--CCCcchHHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSY 109 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 109 (600)
+...+...+..-.+...+..|+.++++.+..-...|. .|-..+.|=-..|++..|+++|+.-. +|+...|++.|..=
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFE 184 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4455666666666777788888888887765322333 33344445556688888888888643 58999999999998
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHHcCCHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AM-DRNVFVGTALLDVYAKCGLIS 187 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~ 187 (600)
.+...++.|..+|++..- +.|+..+|.--.+.--+.|+...++.++..+++. |- ..+...+.+....=.++..++
T Consensus 185 lRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 5689999988888888899999999999988775 21 112334555555555666777
Q ss_pred HHHHHHc----cCCCC-------------------------------------------CHHHHHHHHHHHHhCCCHHHH
Q 007530 188 DASRVFE----SMPER-------------------------------------------NEVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 188 ~A~~~f~----~m~~~-------------------------------------------d~~~~~~li~~~~~~g~~~~A 220 (600)
.|.-+|+ .+++. |-.+|--.+..--..|+.+..
T Consensus 262 Rar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~I 341 (677)
T KOG1915|consen 262 RARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRI 341 (677)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHH
Confidence 7776654 23321 222344444444445566666
Q ss_pred HHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hhCC
Q 007530 221 LILFRRAQVLGLEYNQ-------FTISSVICAC---AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA----KCGC 286 (600)
Q Consensus 221 ~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~----~~g~ 286 (600)
.++|++.... ++|-. ..|.-+=.+| ....+.+.++++++..++ =+|....++.-+=-+|+ ++.+
T Consensus 342 re~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~ 419 (677)
T KOG1915|consen 342 RETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLN 419 (677)
T ss_pred HHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcc
Confidence 6666555533 33311 1111111111 234455555666655555 23334444444433333 4455
Q ss_pred HHHHHHHHhcCC--CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 287 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
+..|++++.... .|-..++-..|..-.+.++++.+..++++..+-+ +-|..++......-...|+.+.|..+|..++
T Consensus 420 l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 420 LTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred cHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 566666655443 2444555555555555566666666666665532 2244455555555555566666666666655
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLAS 414 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 414 (600)
.+..+......|.+.|+-=...|.++.|..+++++ ...+...+|-++...
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 43333333344555555555566666666666554 223444555555443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=5.1e-11 Score=119.31 Aligned_cols=273 Identities=11% Similarity=-0.013 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE------RNEVTWSSMVAGFVQNELYEEALILF 224 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~ 224 (600)
..+|...|....+. ..-+..+..-+..+|...+++++|+++|+.+.+ .+...|.+.+-.+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45566666663333 233446666777777777777777777777654 2566676666543321 122222
Q ss_pred H-HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHh
Q 007530 225 R-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303 (600)
Q Consensus 225 ~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~ 303 (600)
. .+... -+-.+.||-++.+.|+-+++.+.|.+.|+++++.+ +...++|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2 22221 12334556666655555556666665555555442 224455555555555555555555555555544444
Q ss_pred HHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 007530 304 LWNT---MISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379 (600)
Q Consensus 304 ~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 379 (600)
.||+ +...|.+.++++.|+-.|++..+ +.| |.+....+...+.+.|+.|+|+++++++.. +.|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~-------- 554 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDP-------- 554 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCC--------
Confidence 3333 33345555555555555555444 223 223333334444444555555555554431 122
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
.|+..--.-...+...+++++|.+.++++.++-|++...|.+++.+|.+.|+.+.|.
T Consensus 555 -----------------------kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 555 -----------------------KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -----------------------CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 122222222333334455555555555555555555555555555555555555555
Q ss_pred HHHHHhh
Q 007530 460 RARKLIR 466 (600)
Q Consensus 460 ~~~~~m~ 466 (600)
.-|.-+.
T Consensus 612 ~~f~~A~ 618 (638)
T KOG1126|consen 612 LHFSWAL 618 (638)
T ss_pred HhhHHHh
Confidence 5554443
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.6e-10 Score=111.34 Aligned_cols=213 Identities=12% Similarity=0.034 Sum_probs=168.7
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
-.|+.-.+.+-++.+++.... +...|--+..+|....+.++-.+.|+.... .|..+|..-...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357788888888888887533 333366677789999999999999997763 3556666666666667889999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC
Q 007530 325 FEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD 402 (600)
Q Consensus 325 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 402 (600)
|++.+.. .|+ ...|..+--+..+.+.++++...|++.++++ +-.++.|+-....+...++++.|.+.|+.. ..+
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999874 554 5677777777778999999999999997654 556778999999999999999999999875 334
Q ss_pred CC---------HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 403 AT---------ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 403 p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
|+ +.+-.+++..- -.+++..|..+++++++++|.....|..|+.+-.+.|+.++|+++|+.-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 22223333332 23899999999999999999988999999999999999999999998754
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=1.5e-09 Score=111.67 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=144.8
Q ss_pred hhhchhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHcc
Q 007530 14 KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93 (600)
Q Consensus 14 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 93 (600)
+.+....+..++..|+.|+.+||.+++..|+..|+.+.|- +|..|.-..++....+++.++......++.+.+.
T Consensus 6 kf~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 6 KFFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred ccCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 3444566788889999999999999999999999999888 9998887777777778888888877777766554
Q ss_pred CCCCCcchHHHHHHHHHcCCChhHHHHHHHH-HHH-------cC----------------CCCCChhhHHH---------
Q 007530 94 MPQRCIVSWNTIIGSYTTNGREQEAVALFIN-MLR-------EG----------------KTPYSEFTVSS--------- 140 (600)
Q Consensus 94 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g----------------~~~p~~~t~~~--------- 140 (600)
+|...+|..|..+|.+.|+... ++.-++ |.. .| ..-||..+...
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6777788888888888887643 222222 211 11 01122222111
Q ss_pred -HHHHHhc------CC-----------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC---
Q 007530 141 -VLCACAA------KR-----------DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER--- 199 (600)
Q Consensus 141 -ll~~~~~------~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--- 199 (600)
+++.... .+ +..-.+++.....+..-.|++.++.++++.-.-.|+++.|..++.+|.++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 1111100 00 01111222222211111467777888888888888888888888888764
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 007530 200 -NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251 (600)
Q Consensus 200 -d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 251 (600)
+..-|-.++-+ .++...+..+++-|...|+.|+..|+..-+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 22333344443 67777777777788888888888888877777766444
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=8.6e-10 Score=101.06 Aligned_cols=216 Identities=14% Similarity=0.169 Sum_probs=136.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCC--ChhHHHHHHHHHHHcCCHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA-MDR--NVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~ 188 (600)
+.++++|+++|-+|.+. -+.+..+-.++.+.+.+.|..+.|..+|..+.++. .+- -..+.-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 47889999999999885 34455566778888999999999999999888762 111 12344567888999999999
Q ss_pred HHHHHccCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHccCchHHHHHHHHH
Q 007530 189 ASRVFESMPERN---EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT----ISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 189 A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
|+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-++..+- |.-+........+.+.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988743 44677789999999999999999999888765554332 33333344445566666666666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH----hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV----VLWNTMISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|.+.|+.++.+..+.++.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 65543 22222333344444444444444444444433222 1233333444444444444444444433
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2.1e-09 Score=101.65 Aligned_cols=286 Identities=14% Similarity=0.051 Sum_probs=199.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (600)
.|+|.+|.++..+-.+.+ +-....|..-..+.-..||.+.+-.++.++.+....++..+.-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 589999999998877775 223455666777788899999999999999887667788888888889999999999888
Q ss_pred HHccCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 192 VFESMP---ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 192 ~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
-.++.. .++..........|.+.|++.+...++.+|.+.|+-.|...- ++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH----------
Confidence 776654 467888999999999999999999999999988865443211 00
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
...+++.+++-....+..+.-...++..+ +.++..--+++.-+.+.|+.++|.++..+..+.+..|+-. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 01122223332222222233333444443 2345555666777778888888888888888877766622 233
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a 424 (600)
.+.+.++.+.-++..+...+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++...|+..+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 45667777777777777666665555 46667777777777777777777754 5667777777777777777777777
Q ss_pred HHHHHHHhc
Q 007530 425 EIAAKQLFG 433 (600)
Q Consensus 425 ~~~~~~~~~ 433 (600)
.+..++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 777776654
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.1e-09 Score=104.33 Aligned_cols=392 Identities=10% Similarity=0.051 Sum_probs=248.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCC----CCcch-HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh----HHH
Q 007530 70 TSNILINFYSKCGLISGARKVFDEMPQ----RCIVS-WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT----VSS 140 (600)
Q Consensus 70 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t----~~~ 140 (600)
+...|..-|.......+|+..++-+.+ ||.-. --.+-..+.+...+.+|+++|+..+.+- ...+..+ .+.
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv-psink~~rikil~n 281 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhh
Confidence 334455666666677777777765543 23221 2234456667777888888887776652 1122223 333
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC----------------CCHHHH
Q 007530 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE----------------RNEVTW 204 (600)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------------~d~~~~ 204 (600)
+.-.+.+.|.++.|...|++..+. .|+..+.-.|+-.+.--|+-++..+.|..|.. ||....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 334466778888888888888775 45666655666667777888888888877642 222333
Q ss_pred HHHH-----HHHHhCC--CHHHHHHHHHHHHHcCCCCCHHH-HH----H--------H--------HHHHHccCchHHHH
Q 007530 205 SSMV-----AGFVQNE--LYEEALILFRRAQVLGLEYNQFT-IS----S--------V--------ICACAGLAALIQGK 256 (600)
Q Consensus 205 ~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t-~~----~--------l--------l~a~~~~g~~~~a~ 256 (600)
|.-| .-.-+.+ +.++++-.--++...-+.||-.. +. + + ..-+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 3222 2222221 22333333333333333343211 00 0 0 12256788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHH------------------------------------HhhCCHHHHHHHHhcCCCc
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMY------------------------------------AKCGCVVDAYFVFSGIEEK 300 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y------------------------------------~~~g~~~~A~~~~~~~~~~ 300 (600)
+++....+..-.......+.|-..+ ...|++++|.+.|++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 8887776654322222222221111 1346777777777777766
Q ss_pred CHhHHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHH
Q 007530 301 NVVLWNTMIS---GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHY 376 (600)
Q Consensus 301 ~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 376 (600)
|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++.... .+.| |+...
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~il 595 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAIL 595 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHH
Confidence 6554444433 356678899999999887653 34466677788888888899999999987764 4444 78889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
+.|.+.|-+.|+-..|.+..-+- . ++.+..+..-|..-|....-.+.+...|+++.-+.|+.......++..+-+.|+
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 99999999999999998875433 3 234555555566666667778999999999999999876666677778889999
Q ss_pred hHHHHHHHHHhhhC
Q 007530 455 WEEVARARKLIRDS 468 (600)
Q Consensus 455 ~~~a~~~~~~m~~~ 468 (600)
+..|..+++....+
T Consensus 676 yqka~d~yk~~hrk 689 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888643
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=3.2e-11 Score=123.75 Aligned_cols=264 Identities=14% Similarity=0.135 Sum_probs=199.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC
Q 007530 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301 (600)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~ 301 (600)
.++-.|...|+.|+.+||.++|.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9999999999999999999999999999887665 788
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
..+|+.+..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999765 333222 2333455566666666666666654333455566544 556
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 007530 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
...-.|.++.+.+++..+|..........+++-+.. ...+++-....+...+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 667788899999999988743221122223555544 3445555555555555 44 46788999999999999999999
Q ss_pred HHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007530 461 ARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517 (600)
Q Consensus 461 ~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 517 (600)
+...|+++|++..+...|-++-|.... .-++.+.+-|++.|+.|+..+..
T Consensus 226 ll~emke~gfpir~HyFwpLl~g~~~~-------q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLGINAA-------QVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhcCccc-------hHHHHHHHHHHHhcCCCCcchhH
Confidence 999999999999999999887774322 34456788899999999977653
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=5.3e-10 Score=105.13 Aligned_cols=197 Identities=11% Similarity=-0.047 Sum_probs=155.7
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888888888888888876653 346677888888888999999999999888753 3345667777888
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 424 (600)
+...|++++|.+.++.+.+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988753222234556777888889999999999998876 3233 466788888888999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888888999999999999998877654
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=8.9e-12 Score=85.01 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=47.1
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=9.3e-12 Score=84.90 Aligned_cols=50 Identities=24% Similarity=0.499 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248 (600)
Q Consensus 199 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 248 (600)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=3.6e-09 Score=107.24 Aligned_cols=230 Identities=14% Similarity=0.108 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhhCCHHHHHHHHhcCCC----------
Q 007530 237 FTISSVICACAGLAALIQGKQVHAVLCKT-----GF-GSNM-FAASSLVDMYAKCGCVVDAYFVFSGIEE---------- 299 (600)
Q Consensus 237 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~~~~---------- 299 (600)
.|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777888888888877777664 21 1222 2234466778888888888888876642
Q ss_pred c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcC--C
Q 007530 300 K-NVVLWNTMISGFSRHARSVEVMILFEKMQQA-----GLH-PNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHN--V 369 (600)
Q Consensus 300 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 369 (600)
| -..+++.|...|.+.|++++|..++++..+- |.. |.. .-++.+...|...+.+++|..+++...+.+- +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 2356777777888889888888887766441 222 222 2456677788899999999999988765443 2
Q ss_pred Cc----cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc--
Q 007530 370 LP----NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG-- 433 (600)
Q Consensus 370 ~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 433 (600)
.+ -..+++.|...|...|++++|++++++. ...+. ...++.|..+|...+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2457899999999999999999999876 11222 45778899999999999999999988765
Q ss_pred --CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 434 --MEP---DNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 434 --~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..| +...+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334 445578899999999999999999987765
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-07 Score=89.38 Aligned_cols=367 Identities=13% Similarity=0.031 Sum_probs=236.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHH-HHHHHHHcCC-ChhHHH--------------HHHHHHHHcC---
Q 007530 69 LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN-TIIGSYTTNG-REQEAV--------------ALFINMLREG--- 129 (600)
Q Consensus 69 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g-~~~~A~--------------~~~~~m~~~g--- 129 (600)
..--..+..|...++-++|.....+.+..-...-+ .|+.-+-+.| +-.++. ..+.-..+.+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 34456677888888999999998888764333333 3333333332 211222 2222222211
Q ss_pred -----------CCCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 130 -----------KTPYSEFTVSSVLCACA--AKRDVFECKQLHVFALKA-AMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 130 -----------~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
.++|+..+...-+.+++ -.++-..+.+.+..+.+. -++.|+....++.+.|...|+.++|+..|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 02233333333344333 234444444444444333 3666788888999999999999999999988
Q ss_pred CCCCCHHHHHHH---HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchh
Q 007530 196 MPERNEVTWSSM---VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272 (600)
Q Consensus 196 m~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 272 (600)
...-|+.+...| .-.+.+.|+++....+...+.... +-....|..-+.......+++.|..+-...++.. +.+..
T Consensus 258 ~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~ 335 (564)
T KOG1174|consen 258 TLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHE 335 (564)
T ss_pred HhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccch
Confidence 765444433332 233457788888888777776432 1222233333333445566777777776666654 33344
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC--C-cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIE--E-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL-SACS 348 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~ 348 (600)
.+-.-...+...|+.++|.-.|+... . -+..+|..++.+|...|++.+|..+-+...+. +..+..+...+. ..|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF 414 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence 44444566777889999988888654 2 47889999999999999999998887776654 444556655442 2332
Q ss_pred -ccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 007530 349 -HIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 349 -~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~ 425 (600)
....-++|.++++.-. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|...++..+.+.+|.
T Consensus 415 ~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred cCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 2334578888888765 45665 445667778888899999999999876 66789888999999999999999999
Q ss_pred HHHHHHhcCCCCCcch
Q 007530 426 IAAKQLFGMEPDNAGN 441 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~ 441 (600)
..|..++.++|++..+
T Consensus 492 ~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 492 EYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHhcCccchHH
Confidence 9999999999987643
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=2.3e-08 Score=94.78 Aligned_cols=273 Identities=11% Similarity=0.067 Sum_probs=160.4
Q ss_pred CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 184 GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 184 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
|++.+|+++..+-.+ ..+..|..-+.+--+.|+.+.+-.++.+.-+.--.++...+.+........|+++.|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 555566555544322 22333444444455556666666655555443222333333344444455555555555555
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc-----------CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-----------NVVLWNTMISGFSRHARSVEVMILFEKMQ 329 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 329 (600)
.+.+.+ +-++.+.......|.+.|++.....+...+.+. -..+|+.++.-....+..+.-...|++.-
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 555544 344555555566666666666666666555542 12356666665555555555455565554
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHcCCCCCCH
Q 007530 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE----AYDLILNMPFDATA 405 (600)
Q Consensus 330 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~p~~ 405 (600)
.. .+-+...-.+++.-+...|+.++|.++..+..+ .+..|+.. .++ ...+-++.+. ++...+..|.. +
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~--p 328 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPED--P 328 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCC--h
Confidence 43 344455556667777788888888888877764 35555511 111 1223344333 33333444433 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..+.+|...|.+++.+.+|...++.++...|+ ...|..++.++.+.|+..+|..++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 77888888888888888888888888888886 4688888888888888888888887665
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=4e-06 Score=84.21 Aligned_cols=92 Identities=10% Similarity=0.126 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC----------------
Q 007530 33 LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---------------- 96 (600)
Q Consensus 33 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------------- 96 (600)
...|...++-....+-++.+..++++.++. ++..-+-.|..+++.+++++|-+.+.....
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 345555666666666677777777777643 344467777888888888888877766542
Q ss_pred ----------CC----------------------cchHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 007530 97 ----------RC----------------------IVSWNTIIGSYTTNGREQEAVALFINMLRE 128 (600)
Q Consensus 97 ----------~~----------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 128 (600)
|+ ...|++|.+-|.+.|.++.|.++|++.+..
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 11 125999999999999999999999887764
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.2e-07 Score=91.95 Aligned_cols=218 Identities=12% Similarity=0.018 Sum_probs=172.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHH
Q 007530 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 290 (600)
+.-.|+...|...|+........++.. |.-+..+|....+.++..+.|..+.+.+ +.+..+|-.-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 455788999999999988764333332 7777778999999999999999999876 56777888888899999999999
Q ss_pred HHHHhcCCCc---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 007530 291 YFVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367 (600)
Q Consensus 291 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 367 (600)
..-|++...- ++..|--+-.+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999987753 4566666666777888999999999999886 555567888889999999999999999999873
Q ss_pred CCCcc---------HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 368 NVLPN---------VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 368 ~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
+.|+ +.+-.+++-.- -.+++..|.+++++. .+.|. ...+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2333 11222222222 238999999999987 55554 6789999999999999999999999987754
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2e-06 Score=85.70 Aligned_cols=405 Identities=12% Similarity=0.097 Sum_probs=207.4
Q ss_pred HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHH--HHHHH--HcCCCh
Q 007530 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNT--IIGSY--TTNGRE 115 (600)
Q Consensus 40 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~--~~~g~~ 115 (600)
+.-....+++++|.+....++..+ +-|...+..=+-+..+.+.+++|+++.+.-..- .+++. +=.+| .+.++.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 344555667777777777777655 444555555555556667777777655443211 11222 12333 355667
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHHcCCHHHHHHHHc
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFE 194 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~ 194 (600)
++|+..++-. -+.|..+...-...|-+.++++++..++..+.+.+.+ .+...-..++.+-.. -.+. +.+
T Consensus 96 Dealk~~~~~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLKGL-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ 165 (652)
T ss_pred HHHHHHHhcc-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence 7777666611 2223334555555566677777777777777665432 111111111111000 0110 122
Q ss_pred cCCCCCHHHHHH---HHHHHHhCCCHHHHHHHHHHHHHcC-------------CCCCHHH-HHHHHHHHHccCchHHHHH
Q 007530 195 SMPERNEVTWSS---MVAGFVQNELYEEALILFRRAQVLG-------------LEYNQFT-ISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 195 ~m~~~d~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~a~~ 257 (600)
..+.....+|.. ....++..|++.+|+++++...+.+ +.-+..+ -.-+.-.+-..|+-.+|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 222211112211 1223344444444444444441100 0000000 0111222233444444444
Q ss_pred HHHHHHHhCCCC--------------------------------------------------chhHHHHHHHHHHhhCCH
Q 007530 258 VHAVLCKTGFGS--------------------------------------------------NMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 258 ~~~~~~~~~~~~--------------------------------------------------~~~~~~~l~~~y~~~g~~ 287 (600)
++..+++..... ....-+.++.+|. +..
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~ 323 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKM 323 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhH
Confidence 444444433111 1111223333332 233
Q ss_pred HHHHHHHhcCCCcC-HhHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHH-
Q 007530 288 VDAYFVFSGIEEKN-VVLWNTMISGFS--RHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSHIGMVEKGKSYFD- 361 (600)
Q Consensus 288 ~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~- 361 (600)
+.++++-...+... ...+.+++.... +...+.+|.+++...-+. .|.. +.....+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444444444322 233444443322 233467777877776654 3443 333444555677899999999998
Q ss_pred -------HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 007530 362 -------LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--------PFDAT-ASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 362 -------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~ 425 (600)
.+. +.+..|. +..+++.+|.+.++.+.|..++.+. +..+. ..+|.-+...-.++|+-++|.
T Consensus 402 ~~~~~~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 443 3344444 5667888888888766665555443 22222 245555555566789999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
..++++++.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 479 s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999999876 566666654433
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=4.2e-08 Score=90.20 Aligned_cols=292 Identities=13% Similarity=0.081 Sum_probs=155.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-CC------HHHHHHHHHHHHhCCCHHHH
Q 007530 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RN------EVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~d------~~~~~~li~~~~~~g~~~~A 220 (600)
..+.++|...|-+|.+.... +..+.-+|.+.|-+.|..|.|+++-+.+.+ || ..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35678888888888875432 555667788888888888888888877665 33 22344566778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM----FAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
.++|..+.+.| .--......++..|-...+|++|..+-..+.+.+-.+.. ..|.-|...+....+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~---------- 195 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD---------- 195 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh----------
Confidence 88888887654 223345566777777777888888777777776543321 122333333333344
Q ss_pred CCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 007530 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 297 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
.+.|..++.+..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+. +..--.++
T Consensus 196 ---------------------~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ev 251 (389)
T COG2956 196 ---------------------VDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEV 251 (389)
T ss_pred ---------------------HHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHH
Confidence 44444444444442 12211 1112233344445555555555544322 21222334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH--Hhc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY--AAN 452 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~ 452 (600)
...|..+|...|+.++...++.++ ...+....-..+-.......-.+.|...+.+-+...|+--..|-.+-.-. +..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 444444555555555555544443 22223322233333333333344455555555555554322222222111 233
Q ss_pred CChHHHHHHHHHhhhCCCccCCc
Q 007530 453 RRWEEVARARKLIRDSEVKKEKS 475 (600)
Q Consensus 453 g~~~~a~~~~~~m~~~~~~~~~~ 475 (600)
|++.+-...+..|....++..|.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCC
Confidence 45666666677776555554443
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.4e-08 Score=95.42 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=79.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
.+..+...+...|++++|.+.|++..+. .|.+...+..+...+...|+++.|...+...++.... +...+..+...|
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 4444555555555555555555555543 2333444455555555555555555555555554322 334444555555
Q ss_pred HHcCCHHHHHHHHccCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 181 AKCGLISDASRVFESMPE-----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
...|++++|.+.|++... .....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555432 122344445555555555555555555554431 11233344444444455555555
Q ss_pred HHHHHHHHHh
Q 007530 256 KQVHAVLCKT 265 (600)
Q Consensus 256 ~~~~~~~~~~ 265 (600)
...+....+.
T Consensus 189 ~~~~~~~~~~ 198 (234)
T TIGR02521 189 RAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHh
Confidence 5555444443
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.4e-08 Score=97.42 Aligned_cols=257 Identities=12% Similarity=0.034 Sum_probs=167.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
..-.-..-+...+++.+..++++...+. .|+....+..-|.++...|+..+-..+-..+++.- +....+|-++.--|
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 3344445566788999999999999887 56777777777778888888877777777777764 44778889998888
Q ss_pred HHcCCHHHHHHHHccCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 181 AKCGLISDASRVFESMPERN---EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 88899999999998766533 457999999999999999999888776543 11111122223335677888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc----------CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK----------NVVLWNTMISGFSRHARSVEVMILFEK 327 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 327 (600)
+|.++.... |.|+.+.+-+.-++...+.+.+|...|+....+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 888887764 567777777777777777777777777644310 112234444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 328 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
.... .+-|..|+.++.-.|...|+++.|...|.+.
T Consensus 481 aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 481 ALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4433 1223344444444444444444444444433
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=2.5e-08 Score=105.94 Aligned_cols=174 Identities=11% Similarity=-0.017 Sum_probs=82.7
Q ss_pred HHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 186 ISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 186 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
+++|...+++..+ .+..+|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+..+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555554433 234455555555555555555555555555432 112334444445555555555555555555
Q ss_pred HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
++..- .+...+..++..+...|++++|...+++... | +...+..+...|...|+.++|...+.++... .|+..
T Consensus 399 l~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~ 475 (553)
T PRK12370 399 LKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL 475 (553)
T ss_pred HhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence 55431 1222222233334445556666655554421 2 2334455555555666666666666655432 33333
Q ss_pred HHHH-HHHHHHccCCHHHHHHHHHHHHH
Q 007530 339 TYIS-VLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 339 t~~~-ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+... +...+...| +++...++.+.+
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 3322 222334444 355555555444
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=6.1e-08 Score=98.41 Aligned_cols=236 Identities=12% Similarity=0.102 Sum_probs=152.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC----------CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE----------RNEV-TWSSMVAGFVQNELYEEALILFRRAQVL---GLEYN 235 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 235 (600)
..+...|..+|...|+++.|+.+|+...+ +.+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455577777777777777777665432 2222 2334667788889999999998888642 11122
Q ss_pred ----HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC---CCcCHh-HHHH
Q 007530 236 ----QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVV-LWNT 307 (600)
Q Consensus 236 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~---~~~~~~-~~~~ 307 (600)
..++..+..+|.+.|++++|...++.+.+- +... ..+.+. ..+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSE 330 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHH
Confidence 234445555566666666666665554431 1110 012222 2444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhc----C-CCc-cHH
Q 007530 308 MISGFSRHARSVEVMILFEKMQQA---GLHPN----EQTYISVLSACSHIGMVEKGKSYFDLMVKQH----N-VLP-NVF 374 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~ 374 (600)
++..+...+++++|..+++...+. -+.++ ..++..+...|.+.|++++|.++|+.++... + ..+ .-.
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 555666777777777777665442 12333 3478888888889999999999888876543 1 122 244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM--------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
.++-|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|.++.+++..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6777888888888888888887764 34555 46899999999999999999999999874
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=3.4e-06 Score=84.72 Aligned_cols=425 Identities=14% Similarity=0.124 Sum_probs=262.5
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChh
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGM-GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 116 (600)
..++.....+++...+..|+..++. .+.....+|...+......|-++-+.+++++-.+-+...-+--|..++..++++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 3344455566677777777766543 233344567777777777788888888888776666666777888888888888
Q ss_pred HHHHHHHHHHHcC-----CCCCChhhHHHHHHHHhcCCChHHH---HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 117 EAVALFINMLREG-----KTPYSEFTVSSVLCACAAKRDVFEC---KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 117 ~A~~~~~~m~~~g-----~~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
+|-+.+...+... ..+.+...|.-+-...++..+.-.. ..++..+...-.+.--..|++|.+-|.+.|.++.
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 8888887765431 0234445565555555554443332 2333333332122223578999999999999999
Q ss_pred HHHHHccCCCC--CHHHHHHHHHHHHhC----------------CC------HHHHHHHHHHHHHcCC-----------C
Q 007530 189 ASRVFESMPER--NEVTWSSMVAGFVQN----------------EL------YEEALILFRRAQVLGL-----------E 233 (600)
Q Consensus 189 A~~~f~~m~~~--d~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-----------~ 233 (600)
|..+|++.... .+.-++.+..+|++- |+ ++-.+.-|+.+.+.+. +
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 99999875542 222334444443331 11 2222333333332210 0
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC-------
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTG-----FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN------- 301 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~------- 301 (600)
-+..+|..-.. ...|+..+-...+.++++.- ...-...|..+.+.|-..|+++.|+.+|++..+-+
T Consensus 347 ~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 347 HNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred ccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 01111211111 23455666677777777642 11224568889999999999999999999887532
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------C-C------HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLH----------P-N------EQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
...|..-...-.++.+++.|+.+.+......-. | . ...|...+..--..|-++....+++.++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 245666666667788999999998877542111 1 1 1234444444455678888888999887
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-C-CCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCC
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P-F-DAT-ASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~ 437 (600)
.-.=..|... -...-.+-....++++.+.+++- + + .|+ ...|++.+.-+.+ ...++.|..+|+++++.-|.
T Consensus 505 dLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 505 DLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 4433334322 22223345677899999999875 2 2 345 4689998877655 34799999999999997774
Q ss_pred Cc--chHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 438 NA--GNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 438 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.. ..|...+..-.+-|.-..|..++++..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 244455555566788888888888754
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=2.6e-08 Score=105.81 Aligned_cols=256 Identities=14% Similarity=0.032 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------ccCchHHHHHHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQ-----NELYEEALILFRRAQVLGLEYNQ-FTISSVICACA---------GLAALIQGKQVHAVLCK 264 (600)
Q Consensus 200 d~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~---------~~g~~~~a~~~~~~~~~ 264 (600)
+...|...+.+-.. .+.+++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555565555321 13457888888887764 4543 34444433332 22346778888887777
Q ss_pred hCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HH
Q 007530 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TY 340 (600)
Q Consensus 265 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 340 (600)
.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 65 45666777777777888888888888877653 2 4556777777788888888888888887774 34422 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHH
Q 007530 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA-SMWGSLLASCRN 417 (600)
Q Consensus 341 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~ 417 (600)
..++..+...|++++|...++++.+.. .| +...+..+...|...|+.++|...++++ +..|+. ..++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 233334555677888888887775432 23 3444566677777888888888888776 334443 344444445555
Q ss_pred cCChHHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 418 YRNLELAEIAAKQLFG---MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.| +.|...++++++ ..|.++. .+..+|.-.|+-+.+... +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 55 366666666665 2333332 356666667777776666 555544
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=3.5e-07 Score=93.68 Aligned_cols=399 Identities=14% Similarity=0.105 Sum_probs=260.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 007530 63 GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139 (600)
Q Consensus 63 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~ 139 (600)
.+.-|+.+|..|.=+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-.....-++|...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567899999999999999999999999998653 3456899999999999999999999988766532345555566
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHHc-----------CCHHHHHHHHccCCC---CC
Q 007530 140 SVLCACAA-KRDVFECKQLHVFALKA--AM--DRNVFVGTALLDVYAKC-----------GLISDASRVFESMPE---RN 200 (600)
Q Consensus 140 ~ll~~~~~-~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~m~~---~d 200 (600)
..-+.|.. .+..+++..+-.+++.. +. ......|-.+.-+|... ....++.+.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 66666654 57778888777777763 11 11234455555555432 113345555665533 23
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (600)
..+-.-+.--|+..++.+.|++..++....+-.-+...|..+.-.+...+++..|..+.+.....- +.|-.....-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 333333444567788899999999998887666677788877777888889999988887776531 1111100001111
Q ss_pred HHhhCCHHHHHHH-------Hh-------------------cCC----C-cC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007530 281 YAKCGCVVDAYFV-------FS-------------------GIE----E-KN-VVLWNTMISGFSRHARSVEVMILFEKM 328 (600)
Q Consensus 281 y~~~g~~~~A~~~-------~~-------------------~~~----~-~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 328 (600)
-...++.++|... |+ .+. + .| +.++.-+. +... -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-c
Confidence 1112333333322 11 111 0 01 11221111 1111 00000000000 1
Q ss_pred HHcCCCC--C------HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 329 QQAGLHP--N------EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 329 ~~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
...-+.| + ...+......+.+.+..++|...+.+.. ++.| ....|.-....+...|.+++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111222 2 1234455567788889999988777774 3334 5556777778888999999999988765
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 400 -PFDAT-ASMWGSLLASCRNYRNLELAEI--AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 400 -~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.+.|+ +.+..++...+...|+...|.. ++..+++++|.++..|..|+.++.+.|+.++|.+.|....+-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 55665 6788999999999999888888 999999999999999999999999999999999999987654
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=4.7e-08 Score=95.05 Aligned_cols=211 Identities=12% Similarity=-0.005 Sum_probs=144.5
Q ss_pred CchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHH
Q 007530 250 AALIQGKQVHAVLCKTG-FGS--NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMI 323 (600)
Q Consensus 250 g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (600)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666666432 222 245577778888899999999988887653 467889999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-
Q 007530 324 LFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P- 400 (600)
Q Consensus 324 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~- 400 (600)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99998874 554 567777778888899999999999988754 343322222223344567899999888654 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHh-------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 401 FDATASMWGSLLASCRNYRNLELAEIAAKQLF-------GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 401 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..|+ .|.. .......|+...+ ..++.+. ++.|+.+..|..++.+|.+.|++++|...|++..+.+
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2233 2321 2222335555443 2444443 3445566789999999999999999999998887655
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2e-08 Score=92.29 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=157.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 284 (600)
+.|...|.+.|.+.+|...|+.-... .|-..||..+-.+|.+..++..|..++.+-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777778888888888777776654 455556666677777777777777777666654 244444444555566666
Q ss_pred CCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007530 285 GCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361 (600)
Q Consensus 285 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 361 (600)
++.++|.++++.+.+ .++.+..++..+|.-.++++-|+.+++++...|+. +...|..+.-+|.-.+++|-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666665543 24444555555666666677777777776666643 45556666666666666666655555
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 362 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
+.... --.|+ .-..+|..+.......||+..|.+.|+-++..+|++...
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 54321 00111 124567777777778899999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 442 HLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 442 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++.|+..-.+.|+.++|..+++...+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999887654
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.3e-06 Score=79.89 Aligned_cols=411 Identities=13% Similarity=0.068 Sum_probs=242.1
Q ss_pred HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCh
Q 007530 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI-LINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGRE 115 (600)
Q Consensus 40 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 115 (600)
|.-+...+++..|..+++.-...+-+.. ...+. +...|-..|++++|..++..+.+ ++...|-.|.-++.--|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4455567788888888887664432221 12233 33455678999999999986653 5667777777777777888
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
.+|..+-.. .+.++---..+....-+.++-++-..++..+... ..-.-+|.++.-..-.+.+|+.++.+
T Consensus 108 ~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888776443 2334444445555566778877777777766543 22334555655555678899999998
Q ss_pred CCC--CCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--c--CchHH--HHH---------
Q 007530 196 MPE--RNEVTWSS-MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG--L--AALIQ--GKQ--------- 257 (600)
Q Consensus 196 m~~--~d~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~--g~~~~--a~~--------- 257 (600)
+.. |+-...|. |.-.|.+..-++-+.+++.--.+. -||+ |+..-+.+|.. . |+..+ -..
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 765 44445554 445677778888888887766654 3443 22222333322 1 11111 111
Q ss_pred -HHHHHHHhCC------CCc-----------hhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCC--
Q 007530 258 -VHAVLCKTGF------GSN-----------MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-- 317 (600)
Q Consensus 258 -~~~~~~~~~~------~~~-----------~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-- 317 (600)
....+.++++ +.- +..--.|+--|.+.+++++|..+..++...++.-|-.-.-.++..|+
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 1122222211 101 11222345567888889998888888765444433222222333332
Q ss_pred -----hHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 318 -----SVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 318 -----~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
..-|.+.|+-.-+.+..-|... --++.+++.-..++++.+.++..+. .+=...|...+| +..+++..|.+.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHH
Confidence 3345555554444443333221 2234444455567888888888773 444444554444 6788888999999
Q ss_pred HHHHHHcCC--CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 392 AYDLILNMP--FDATASMWGSLLASC-RNYRNLELAEIAAKQLFGMEPD-NAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 392 A~~~~~~m~--~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
|+++|-.+. .-.|..+|.+++.-| ...+..+.|..++-++ -.|. .......+++-|.+++.+--|.+.|+.+..
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999987773 123566776666554 4567777776665432 1222 233455678888899999888898988876
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
.+
T Consensus 490 lD 491 (557)
T KOG3785|consen 490 LD 491 (557)
T ss_pred cC
Confidence 54
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=1.6e-05 Score=82.12 Aligned_cols=412 Identities=12% Similarity=0.063 Sum_probs=252.9
Q ss_pred HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcch-HHHHHHHHHcC----
Q 007530 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVS-WNTIIGSYTTN---- 112 (600)
Q Consensus 40 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~---- 112 (600)
...+...|+++.|...+..-.+. +.....+.......|.+.|+.++|..++..+.. |+-.. |..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34456789999999888664432 344466777788999999999999999998875 43333 44555554222
Q ss_pred -CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 113 -GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 113 -g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
...+...++|+++... . |.......+.-.+.....+ ..+..++...++.|++ .+++.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~--y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--Y-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHh--C-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 3567778888888765 2 3433333332222221222 2355666667777754 46777777777665555555
Q ss_pred HHHccCC------------------CCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc
Q 007530 191 RVFESMP------------------ERNEVTW--SSMVAGFVQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGL 249 (600)
Q Consensus 191 ~~f~~m~------------------~~d~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 249 (600)
+++.... .|....| .-+...|-..|++++|++++++..+. .|+ ...|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 5544321 1233334 55677888999999999999998875 565 55777888889999
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH----------hHHH--HHHHHHHhcCC
Q 007530 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV----------VLWN--TMISGFSRHAR 317 (600)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~--~li~~~~~~g~ 317 (600)
|++.+|....+.+.... ..|..+-+-.+..+.++|++++|.+++.....++. ..|- ....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999876 56888888899999999999999999887776541 1343 34567899999
Q ss_pred hHHHHHHHHHHHHc--CCCCC-------------HHHHHHHHHHHHccCC-------HHHHHHHHHHHHHhcCCCc----
Q 007530 318 SVEVMILFEKMQQA--GLHPN-------------EQTYISVLSACSHIGM-------VEKGKSYFDLMVKQHNVLP---- 371 (600)
Q Consensus 318 ~~~A~~l~~~m~~~--g~~p~-------------~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p---- 371 (600)
+..|+.-|....+. .+.-| ..+|..+++..-+... ...|.+++-.+-.......
T Consensus 321 ~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~ 400 (517)
T PF12569_consen 321 YGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQ 400 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 99998887766542 12222 2233333333222111 1223333333321100000
Q ss_pred -------cHHHHHHHHHHH---HhcCCHHHHHHHHH-----------cC----CCCCCHHHHH-HHHHHHHHcCChHHHH
Q 007530 372 -------NVFHYSCMIDIL---GRAGLIHEAYDLIL-----------NM----PFDATASMWG-SLLASCRNYRNLELAE 425 (600)
Q Consensus 372 -------~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m----~~~p~~~~~~-~ll~~~~~~~~~~~a~ 425 (600)
+..--..+-.-- .+...-+++...-. +. +.+.|..... .|+ ....-+++|.
T Consensus 401 ~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~ 477 (517)
T PF12569_consen 401 EADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAM 477 (517)
T ss_pred ccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHH
Confidence 000000000000 01111111111110 00 1111221111 121 2234578899
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
++++-+.+..|++..+|..--.+|.+.|++--|.+.++.
T Consensus 478 kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 478 KFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999988877653
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=5.8e-07 Score=87.44 Aligned_cols=148 Identities=11% Similarity=-0.109 Sum_probs=84.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 113 GREQEAVALFINMLREGKTPYS--EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
+..+.++.-+.+++......|+ ...|..+...+...|+.+.|...+..+++..+. +..+|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 3455666666666643212222 234555555666667777777666666665433 5566677777777777777777
Q ss_pred HHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 007530 191 RVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 191 ~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
..|++..+ | +..+|..+...+...|++++|++.|++.... .|+..........+...++.++|...+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 77766543 2 3556666666677777777777777766653 3433211111222233455666666665443
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=3.4e-05 Score=78.02 Aligned_cols=436 Identities=11% Similarity=0.026 Sum_probs=258.3
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHc
Q 007530 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTT 111 (600)
Q Consensus 35 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 111 (600)
.|-.+++.| ..+....+..+.+.+++ +++....+....--.+...|+.++|......-.. ++-+.|..+.-.+-.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 344455444 45566677777777665 3332222322222223456888888888776554 355678888888888
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (600)
..++++|++.|+.....+ +.|...+.-+.-.-++.|+++.....-.+..+..+. ....|..++-++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988864 556777766666666777777777766666665322 45567777778888888888888
Q ss_pred HHccCCC-----CCHHHHHHH------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCchHHHHHHH
Q 007530 192 VFESMPE-----RNEVTWSSM------VAGFVQNELYEEALILFRRAQVLGLEYNQFTIS-SVICACAGLAALIQGKQVH 259 (600)
Q Consensus 192 ~f~~m~~-----~d~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~ 259 (600)
+.+...+ ++...+.-. .....+.|..++|++.+..-... ..|...+. .-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 7665432 333333222 23456778888888777654332 22333332 3345567788888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH-HHHhcCCCcCH--hHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCC
Q 007530 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNV--VLWNTMISGFSR-HARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~-~~~~~~~~~~~--~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p 335 (600)
..++..+ +.+..-|..+...+++-.+.-++. .+|....+.-. ..-.-+--...+ ..-.+..-+++..+.+.|++|
T Consensus 243 ~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 243 RRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 8888774 334444444555554333333333 55554432100 000000001111 122334455667777778765
Q ss_pred CHHHHHHHHHHHHccCCHHH----HHHHHHHHHHhcC----------CCccHHHH--HHHHHHHHhcCCHHHHHHHHHcC
Q 007530 336 NEQTYISVLSACSHIGMVEK----GKSYFDLMVKQHN----------VLPNVFHY--SCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 336 ~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m 399 (600)
--. .+.+.|-.-...+- +..+...+ ...| -+|+...| -.++..|-+.|+++.|+.+++..
T Consensus 322 vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 322 VFK---DLRSLYKDPEKVAFLEKLVTSYQHSL-SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred hhh---hhHHHHhchhHhHHHHHHHHHHHhhc-ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 333 33333322221111 11111111 1111 14555444 45677888999999999999876
Q ss_pred -CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc-----c
Q 007530 400 -PFDATA-SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK-----K 472 (600)
Q Consensus 400 -~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~ 472 (600)
.-.|+. ..|..=.+.+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.. .
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~ 477 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLA 477 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHH
Confidence 445653 344445567788899999999999999998765433334566667889999999998877665531 1
Q ss_pred CCceEEEEEc
Q 007530 473 EKSKSWVEIK 482 (600)
Q Consensus 473 ~~~~~~~~i~ 482 (600)
+..|.|..+.
T Consensus 478 ~mqcmWf~~E 487 (700)
T KOG1156|consen 478 EMQCMWFQLE 487 (700)
T ss_pred HhhhHHHhHh
Confidence 2246776554
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=1.5e-07 Score=82.90 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMID 381 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 381 (600)
+...+.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+..++ +.| +-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3445667899999999999999999885 454 56888888899999999999999999874 345 5567788888
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 007530 382 ILGRAGLIHEAYDLILNMPFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
-++..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+.+.....+.+...+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999998733332 56899998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 007530 458 VARARKLIRDSEV 470 (600)
Q Consensus 458 a~~~~~~m~~~~~ 470 (600)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887764
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1e-07 Score=87.63 Aligned_cols=222 Identities=12% Similarity=-0.024 Sum_probs=146.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 007530 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182 (600)
Q Consensus 103 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 182 (600)
+.|.++|.+-|.+.+|.+.|+.-++. .|-+.||..+-++|.+..+...|..++.+.++. ++-|+....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 56778888888888888888887775 356678888888888888888888888887776 34466666677778888
Q ss_pred cCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 007530 183 CGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 259 (600)
.++.++|.++++...+ .++.+...+..+|.-.++++-|+.+|+++.+.|+. +...|..+.-.|.-.+++|.+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888887665 25556666677788888888888888888888754 4556666666777777777777777
Q ss_pred HHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007530 260 AVLCKTGFGSN--MFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQ 329 (600)
Q Consensus 260 ~~~~~~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 329 (600)
..+...--.|+ ..+|-.|.......|++..|.+.|+-... .+..++|.|.-.-.+.|+.++|..++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 77665433222 23444444444445555555555443332 122344444444444444444444444433
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=3.6e-05 Score=79.38 Aligned_cols=403 Identities=12% Similarity=-0.003 Sum_probs=254.7
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC----CCcchHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ----RCIVSWN 103 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~ 103 (600)
....|...|-.+.-+..+.|.++.+-+.|++....- -.....|..+-..|..+|.-..|..+.+.-.. |+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 334577778777778888888888888888876543 34456788888889999999999999986542 4333333
Q ss_pred HHH-HHHH-cCCChhHHHHHHHHHHHc-----CCCCCChhhHHHHHHHHhcC----C-------ChHHHHHHHHHHHHhC
Q 007530 104 TII-GSYT-TNGREQEAVALFINMLRE-----GKTPYSEFTVSSVLCACAAK----R-------DVFECKQLHVFALKAA 165 (600)
Q Consensus 104 ~li-~~~~-~~g~~~~A~~~~~~m~~~-----g~~~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g 165 (600)
.++ ..|. +-+..+++++.-.+.+.. +.++| ..+..+.-+|... . ...++.+.++..++.+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 333 3333 347778888777776652 11333 3344444343322 1 1335667777887776
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHccCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHH
Q 007530 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMP----ERNEVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTIS 240 (600)
Q Consensus 166 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~ 240 (600)
.. |+.+--.+.--|+..++++.|.....+.. ..+...|..+.-.+...+++.+|+.+.+..... |. |..-..
T Consensus 475 ~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~ 551 (799)
T KOG4162|consen 475 PT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMD 551 (799)
T ss_pred CC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhch
Confidence 54 44444445556888899999888766543 458899999999999999999999999876543 21 110000
Q ss_pred HHHHHHHccCchHHHHHH-------HH----------HHHH----hCC-------CCchhHHHHHHHHHHhh---CCHHH
Q 007530 241 SVICACAGLAALIQGKQV-------HA----------VLCK----TGF-------GSNMFAASSLVDMYAKC---GCVVD 289 (600)
Q Consensus 241 ~ll~a~~~~g~~~~a~~~-------~~----------~~~~----~~~-------~~~~~~~~~l~~~y~~~---g~~~~ 289 (600)
.-+..-...++.+++... |+ +... .|. ...+.++..+....... -..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 001111112222222111 11 1111 111 11122222222222111 11111
Q ss_pred HHHHHhcCCCcC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 290 AYFVFSGIEEKN------VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 290 A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
....+...+.|+ ...|......+...+..++|...+.+.... ..-....|......+...|..++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 222222222333 345667777888999999999888887764 2233445555556667789999999999887
Q ss_pred HHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHH--HHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 364 VKQHNVLP-NVFHYSCMIDILGRAGLIHEAYD--LILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 364 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
. -+.| ++....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-..|..++++++.+
T Consensus 711 l---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 711 L---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred H---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 5 4566 46678899999999998777777 77766 5555 57899999999999999999999999999998877
Q ss_pred cc
Q 007530 439 AG 440 (600)
Q Consensus 439 ~~ 440 (600)
|.
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 63
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=7.5e-08 Score=95.49 Aligned_cols=248 Identities=13% Similarity=0.032 Sum_probs=188.0
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHH
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
+.+.|++.+|.-.|+..++.. |.+...|--|.......++-..|+..+.+..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999988876 66888999999999999998999998887765 46677778888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 323 ILFEKMQQAGLH--------PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 323 ~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
..|++-+....+ ++..+-.. ........+....++|-.+....+..+|..++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887654210 01000000 12222334455667777776777767888899999999999999999999
Q ss_pred HHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 007530 395 LILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 395 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 472 (600)
.|+.. .++| |..+||-|...++...+.++|...|.+++++.|.-.++...|+..|...|.+++|.+.|=......-+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k- 530 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK- 530 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc-
Confidence 99987 5666 57899999999999999999999999999999999999999999999999999999998666532211
Q ss_pred CCceEEEEEcCcccCcchHHHHHHHHHHHHHH
Q 007530 473 EKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEM 504 (600)
Q Consensus 473 ~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m 504 (600)
+.. .....++ .+.+++.|+..+.-|
T Consensus 531 ----s~~--~~~~~~~-se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 531 ----SRN--HNKAPMA-SENIWQTLRLALSAM 555 (579)
T ss_pred ----ccc--cccCCcc-hHHHHHHHHHHHHHc
Confidence 000 0001112 567887777555544
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=2.9e-06 Score=87.46 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=74.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHH
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILG 384 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 384 (600)
-+...|-..|++++|++++++.++. .|+ ...|..-...+-+.|++++|.+..+... .+.+ |...-+..+..+.
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHH
Confidence 3445566677777777777777764 455 3455555666777777777777777764 2233 4445555566667
Q ss_pred hcCCHHHHHHHHHcCCC---CC--CH----HHH--HHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 385 RAGLIHEAYDLILNMPF---DA--TA----SMW--GSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m~~---~p--~~----~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
|+|++++|.+++..... .| |. ..| .....+|.+.|++..|++-+..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777665521 11 11 133 2344566777777777776666654
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.4e-06 Score=76.90 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=132.5
Q ss_pred CCHHHHHHHHccCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 184 g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
+++..+..+.++.+. .+..+.+.......+.|++++|++-|+...+-|--.....|+..+ +..+.++.+.|.....++
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEI 204 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHH
Confidence 444445555555542 333343333334445555555555555444332122233344333 223344555555555555
Q ss_pred HHhCCCC-------------c---------------hhHHHHHHHHHHhhCCHHHHHHHHhcCCCc-----CHhHHHHHH
Q 007530 263 CKTGFGS-------------N---------------MFAASSLVDMYAKCGCVVDAYFVFSGIEEK-----NVVLWNTMI 309 (600)
Q Consensus 263 ~~~~~~~-------------~---------------~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li 309 (600)
+..|+.. | +..+|.-...+.+.|+.+.|.+.+..|+.+ |++|...+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 5443221 1 122344445567889999999999999853 666655443
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhc-C
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL-PNVFHYSCMIDILGRA-G 387 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~-g 387 (600)
-. -..+++.+..+-+.-+..... --..||..++-.|++..-++.|-.++.+-. ..... .+...|+ |++++..+ -
T Consensus 285 l~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT 360 (459)
T KOG4340|consen 285 LM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQT 360 (459)
T ss_pred Hh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCC
Confidence 22 124455555555555555432 345789999999999988888888775431 11110 1222333 33444433 3
Q ss_pred CHHHHHHHHHcCCCCCCHHHHHHHH--HHHHHcCC---hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 388 LIHEAYDLILNMPFDATASMWGSLL--ASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 388 ~~~~A~~~~~~m~~~p~~~~~~~ll--~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
..++|++-++.+...-....-..-+ .--+..++ ...+.+-+++.+++- ..+...-++.|++..++.-+.+.|
T Consensus 361 ~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 361 APEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHH
Confidence 4556655444431000000000000 00111111 112222233333321 113445667788888888888887
Q ss_pred HHhh
Q 007530 463 KLIR 466 (600)
Q Consensus 463 ~~m~ 466 (600)
..-.
T Consensus 438 r~Sv 441 (459)
T KOG4340|consen 438 RKSV 441 (459)
T ss_pred HHHH
Confidence 6544
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-05 Score=79.39 Aligned_cols=216 Identities=11% Similarity=0.041 Sum_probs=143.8
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH----------hHHHHHH
Q 007530 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV----------VLWNTMI 309 (600)
Q Consensus 240 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~li 309 (600)
..+.++..+..+++.+.+-+...+... .++.-++....+|...|........-....+..- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556667777777777777665 5666667777778877777666555444332211 1222234
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCC
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF-HYSCMIDILGRAGL 388 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 388 (600)
.+|.+.++++.|+..|.+.......||..+ +....+++........ -+.|... -...=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 456667778888888887666544444222 2233344444433331 2233321 11112456778899
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 389 IHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+.+|...|.++ ...| |...|..-..++.+.+++..|..-.+..++++|+....|..=+.++....+|++|.+.|....
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 2234 678888899999999999999999999999999999999988889999999999999998877
Q ss_pred hCC
Q 007530 467 DSE 469 (600)
Q Consensus 467 ~~~ 469 (600)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 655
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=6.9e-06 Score=84.66 Aligned_cols=353 Identities=13% Similarity=0.053 Sum_probs=182.3
Q ss_pred CchhHHHHHH--HHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCC-------C-CCCh
Q 007530 66 NDTLTSNILI--NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-------T-PYSE 135 (600)
Q Consensus 66 ~~~~~~~~li--~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~-~p~~ 135 (600)
-|..+-.+++ +.|.--|+.+.|.+-.+.+ ++...|..|.+.+.+..+.+-|.-.+-.|..... . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 3566667776 4577789999988887766 3567899999999888888877766666543210 1 111
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC-CHHHHHHHHHHHHhC
Q 007530 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQN 214 (600)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~ 214 (600)
.+=.-+.-.....|-+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..- =-.||..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22222333345677788888888776654 23445666778888888775432221 123555555555667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHH
Q 007530 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294 (600)
Q Consensus 215 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 294 (600)
++.+.|++.|++-... -...+ -++. .++...+++.+. ..|...|.--..-.-..|+++.|+.+|
T Consensus 872 ~Di~~AleyyEK~~~h----afev~-rmL~-----e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVH----AFEVF-RMLK-----EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ccHHHHHHHHHhcCCh----HHHHH-HHHH-----hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHH
Confidence 7788888887753211 00000 0110 001111111111 122334444444444556666666666
Q ss_pred hcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH---------
Q 007530 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK--------- 365 (600)
Q Consensus 295 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--------- 365 (600)
.... -|-+++...|-.|+.++|-.+-++- -|......|.+-|-..|++.+|..+|.+...
T Consensus 936 ~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 936 SSAK-----DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred HHhh-----hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 3445555555556666555554431 2334444455556666666666655554421
Q ss_pred hcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHh----------cCC
Q 007530 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF----------GME 435 (600)
Q Consensus 366 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~ 435 (600)
+++++. ..+|. ....+..+.-+|-.+|++.+..-+ --+..|.+.|.+.+|+++.-+.. .++
T Consensus 1005 End~~d--~L~nl--al~s~~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1005 ENDMKD--RLANL--ALMSGGSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred hcCHHH--HHHHH--HhhcCchhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 111100 01110 001112233334444444432111 11223444555555554433221 255
Q ss_pred CC-CcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 436 PD-NAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 436 p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
|. ||.....-++.+....++++|..++-..+
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 53 56667777777888888888888776554
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=2.4e-07 Score=88.84 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=72.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH---HHHHHHHHHhcCCHH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH---YSCMIDILGRAGLIH 390 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~ 390 (600)
..|++++|++++.+- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.+..+.-.+.++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 345555555544321 233333444445555555555555555553 12222211 112222222223456
Q ss_pred HHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHhhh
Q 007530 391 EAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW-EEVARARKLIRD 467 (600)
Q Consensus 391 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 467 (600)
+|..+|+++ ...+++.+.+.+..+....|++++|+.++.++++.+|+++.+...++.+....|+. +.+.+.+.+++.
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666655 22345566666666666667777777777777777777666666666666666666 555566666654
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=2.2e-05 Score=73.25 Aligned_cols=190 Identities=7% Similarity=-0.023 Sum_probs=99.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC---CCcCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
..|+...+......+++.. +-|...+..-..+|...|.+..|+.-++.. ...+....--+-..+..-|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444444444444444432 334445555555555566665555444332 234444444555555666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHH-------------HHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCH
Q 007530 325 FEKMQQAGLHPNEQTYISV-------------LSACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILGRAGLI 389 (600)
Q Consensus 325 ~~~m~~~g~~p~~~t~~~l-------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 389 (600)
.++-.+ +.||....... +......+.+.++.+-.+...+...-.+ ....+..+-.++...|++
T Consensus 246 iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 666555 35554321110 0112234455555555555443211101 122344455566666777
Q ss_pred HHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 390 HEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.+|++...+. .+.|| +.++..-..+|.....++.|+.-++++.+.+|++..
T Consensus 324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 7777666554 44454 566666666777777777777777777777776654
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.9e-05 Score=75.44 Aligned_cols=287 Identities=12% Similarity=0.040 Sum_probs=202.4
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
+..++...|...+-.+.....++.|......+.+.+...|+.+++...|+......+. ++.......-...+.|+.++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 3456666666665555444437888899999999999999999999999998775322 121112222234567888877
Q ss_pred HHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 190 SRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 190 ~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
..+...+-. .....|-.-........+++.|+.+-++..+.. +-+...|..-..++...++.++|.-.|..+....
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 776665543 234456555666677889999999988877642 2234455555677788999999999998887764
Q ss_pred CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHH-HH-HHhcCChHHHHHHHHHHHHcCCCCCHH-HH
Q 007530 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMI-SG-FSRHARSVEVMILFEKMQQAGLHPNEQ-TY 340 (600)
Q Consensus 267 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li-~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 340 (600)
+.+...|..|+..|...|++.+|.-.-+... ..+..+.+.+. .. +-...--++|..++++-.. +.|+-. ..
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 5688999999999999999999875544322 12333333221 11 1122235688888887766 567744 55
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC
Q 007530 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT 404 (600)
Q Consensus 341 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 404 (600)
+.+...|...|..+.++.+++.... ..||....+.|.+.+...+.+++|.+.|... .+.|+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6677789999999999999998874 3689999999999999999999999998765 44554
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=0.00011 Score=68.91 Aligned_cols=383 Identities=11% Similarity=0.046 Sum_probs=213.1
Q ss_pred HHHHHHHHH-hccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHH-HHHHcC
Q 007530 35 TLQATLQSC-ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII-GSYTTN 112 (600)
Q Consensus 35 ~~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~ 112 (600)
....-|..| -+.|+.++|...+..+.... .++..++-.|...+--.|.+.+|..+-...++ ....+.|+ ..-.+-
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k--~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK--TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHh
Confidence 455555555 48899999999999887754 45555555565555556888899888777653 22222222 222222
Q ss_pred C------------------------------ChhHHHHHHHHHHHcCCCCCChhhHHHHH-HHHhcCCChHHHHHHHHHH
Q 007530 113 G------------------------------REQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLHVFA 161 (600)
Q Consensus 113 g------------------------------~~~~A~~~~~~m~~~g~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~ 161 (600)
| .+.+|+++|.+.+..+ |+-...+.-+ -+|.+..-.+-+.+++.-.
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn---~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN---PEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 3 3444444444444332 2222222222 2223333344444444433
Q ss_pred HHhCCCCChhHHHHHHHHHHHc--CCHHHHH--HHHccCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCC
Q 007530 162 LKAAMDRNVFVGTALLDVYAKC--GLISDAS--RVFESMPERNEVTWSSMVAGFVQN-----ELYEEALILFRRAQVLGL 232 (600)
Q Consensus 162 ~~~g~~~~~~~~~~li~~y~~~--g~~~~A~--~~f~~m~~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~ 232 (600)
++.- +.++..-|.......+. |+..+++ ++-+...+. ...+.-.+++ .+.+.|++++--+.+ +
T Consensus 212 L~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~ 283 (557)
T KOG3785|consen 212 LRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMK--H 283 (557)
T ss_pred HHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHh--h
Confidence 3331 11222222222222111 1111111 111111100 0112222222 123455555544433 2
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHHhhCCHHHHHHHHhcCCC-----cCH
Q 007530 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA-----ASSLVDMYAKCGCVVDAYFVFSGIEE-----KNV 302 (600)
Q Consensus 233 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~ 302 (600)
.|. .-..++--|.+.+++.+|..+...+.- ..|...+ +.++..-......+.-|.+.|+-+-+ ..+
T Consensus 284 IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 232 223444557788899888877655421 1222222 22232222333346678888876543 233
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH-HHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMID 381 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~ 381 (600)
.--.+|.+.+.-..++++++-.+.....- +.-|...-..+..+.+..|++.+|+++|-.+. .-.+ .+..+| ..|..
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLAR 436 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHH
Confidence 44566777777788899999999988776 33344444457888999999999999998874 2222 344555 45568
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 382 ILGRAGLIHEAYDLILNMPFDATASMWGS-LLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
+|.++|.++-|++++-++....+..+.-. +..-|.+.+.+=-|-++|..+..++|..
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 89999999999999999864445555444 4457888999999999999999999973
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=9e-05 Score=75.07 Aligned_cols=391 Identities=12% Similarity=0.051 Sum_probs=232.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHccCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 007530 69 LTSNILINFYSKCGLISGARKVFDEMPQRC---IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145 (600)
Q Consensus 69 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~ 145 (600)
..+..++..|- .+++...+++.+.+..+. ..|.....-.+...|+-++|....+.-.... +-+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHH
Confidence 34555666663 345555555444443211 1222222223445678888888877766653 34666777777777
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHH
Q 007530 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALI 222 (600)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~ 222 (600)
....++++|.+.+..+++.+.. |...+.-|.-.-++.|+++.....-....+ .....|..++.++.-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888887644 667777666666677777666655444433 345678888888888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHH------HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 223 LFRRAQVLG-LEYNQFTISSVICA------CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 223 ~~~~m~~~g-~~p~~~t~~~ll~a------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
+.++..+.. -.|+...|.-.... ....|.++.|.+.+...... +......-..-.+.+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 888887654 24565555533322 24556666666655444332 22233344455677788888888888888
Q ss_pred cCCC--cCHhHHHHH-HHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHhcCCC
Q 007530 296 GIEE--KNVVLWNTM-ISGFSRHARSVEVM-ILFEKMQQAGLHPNEQTYISV-LSACSHIGMVEKGKSYFDLMVKQHNVL 370 (600)
Q Consensus 296 ~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~ 370 (600)
.+.. ||...|+-. ..++.+-.+..+++ .+|....+. .|-...-.-+ ++........+..-.++..+. ..|++
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p 320 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVP 320 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCC
Confidence 7764 444444443 33443333333444 555555443 1211111111 111111222333344445444 34554
Q ss_pred ccHHHHHHHHHHHHhcCCHHH----HHHHHHcC-C------------CCCCHHHHHH--HHHHHHHcCChHHHHHHHHHH
Q 007530 371 PNVFHYSCMIDILGRAGLIHE----AYDLILNM-P------------FDATASMWGS--LLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~ 431 (600)
+ ++..+...|-.-...+= +..+...+ + .+|....|.. +...+-..|+++.|+...+.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 23333333322111111 11122222 1 2567777765 455567789999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 432 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
+.--|.-+..|..-+.++...|..++|...+++..+.+.
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999888999999999999999999999999987663
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=2.2e-05 Score=79.10 Aligned_cols=195 Identities=11% Similarity=-0.024 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHH
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNE--QTYISVLSAC 347 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~ 347 (600)
...+...+...|++++|...+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..+..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 33444555666666666666655442 2344555556666666666666666666554321 1222 1233455556
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHH-H--HHHHHHHhcCCHHHHHHH---HHc---C-CCCCCHHHHHHHHHHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHY-S--CMIDILGRAGLIHEAYDL---ILN---M-PFDATASMWGSLLASCRN 417 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~~ 417 (600)
...|++++|..+++.........+..... + .++.-+...|....+.++ ... . +.............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 66666666666666653221111111111 1 222222233322222221 111 1 100111222245555666
Q ss_pred cCChHHHHHHHHHHhcCC-C--------CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 418 YRNLELAEIAAKQLFGME-P--------DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.|+.+.|...++.+.... . .........+.++...|++++|.+.+......
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777765411 1 12344556777788999999999888777643
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=9e-06 Score=85.71 Aligned_cols=396 Identities=14% Similarity=0.028 Sum_probs=235.3
Q ss_pred hHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 51 RGKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 51 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
.+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .+..+|..+...|++...++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 33444444444444444 46788888888888888899999987654 577889999999999999999999833322
Q ss_pred HcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHH
Q 007530 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206 (600)
Q Consensus 127 ~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~ 206 (600)
+......-...|..+.-.+...++...+..-|+...+..+. |...|..|..+|.++|++..|.++|++...-++.+|..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 22101111122333445567788889999889888887655 88899999999999999999999998877644443332
Q ss_pred ---HHHHHHhCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHccCchH-------HHHHHHHHHHHhCCCCc
Q 007530 207 ---MVAGFVQNELYEEALILFRRAQVL------GLEYNQFTISSVICACAGLAALI-------QGKQVHAVLCKTGFGSN 270 (600)
Q Consensus 207 ---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~g~~~-------~a~~~~~~~~~~~~~~~ 270 (600)
....-+..|.+++|+..+...... +..--..++..+...+...|-.. .+.+.+..........+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 223346689999999999877542 11111223333333333333333 33333333333333334
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHh--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCCHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV--LWNTMISG-FSRHARS---V---EVMILFEKMQQAGLHPNEQTYI 341 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~g~~p~~~t~~ 341 (600)
...|-.+.+ |..+|-... |+.+ .+..++.. +-..+.. + -+.+.+-.-.+ ...+..+|.
T Consensus 713 ~~~Wi~asd----------ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~Wy 779 (1238)
T KOG1127|consen 713 RLQWIVASD----------ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWY 779 (1238)
T ss_pred HHHHHHHhH----------HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHH
Confidence 444443333 333343333 3321 11111111 1122211 1 11111111111 112234444
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHH
Q 007530 342 SVLSACSH--------IGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGS 410 (600)
Q Consensus 342 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 410 (600)
.+...|.+ ..+...|+..+...++. .. +..+|+.|. .+...|.+.-|..-|-+- ..+....+|..
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHH-Hhhccchhhhhhhhhhhhhhccccchhheec
Confidence 44333322 12334566666665532 23 344555543 445567777776666443 22345788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
+...|....|++-|..++.+...++|.+...+...+.+-...|+.-++..+|..
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 988899999999999999999999999888877777777777877777777765
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=1.6e-06 Score=83.17 Aligned_cols=226 Identities=12% Similarity=0.011 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMY 281 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y 281 (600)
....+.++|...|+++.++. +..... .|.......+...+....+-+.+..-+...+..... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34445555666666554332 222221 444444433333333223333333322222222222 2333333344566
Q ss_pred HhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCCHHHHH
Q 007530 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS----HIGMVEKGK 357 (600)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~ 357 (600)
...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 7778888888888765 45666667788888999999999999998864 344 34444444433 234688999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHhcC
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNL-ELAEIAAKQLFGM 434 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 434 (600)
.+|+++.. ...+++.+.+.+.-+....|++++|++++.+. ...| ++.+...++......|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999864 34577788888888899999999999988775 3333 466777788887787877 6788888888888
Q ss_pred CCCCc
Q 007530 435 EPDNA 439 (600)
Q Consensus 435 ~p~~~ 439 (600)
.|+.+
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 88865
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.00012 Score=77.50 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..++.++.+.|.+++-.+.+..+.+..-+|.+ -+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3467999999999999999998877542 36678999999999999999999998888887666654 456888
Q ss_pred HHHhhCCHHHHHHHHhcCCC-----------------------cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 280 MYAKCGCVVDAYFVFSGIEE-----------------------KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
+|++.+++.+-+++...-.. .++..|..+...+...|++..|...-++. .+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 99999988887766542110 13334444444555555555554443332 23
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLAS 414 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 414 (600)
..||.-+-.+|...+.+..|. |. ..++.....-..-|+..|-..|.++|-..+++.. +.+. .-..++.|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 455666666665544433321 21 1122233444556666777777777777766654 3332 33445555544
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
|.+.+ .++..+.++-... .-+ .--+++++.++-.|.+..-++..-
T Consensus 1323 Yskyk-p~km~EHl~LFws-RvN----ipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1323 YSKYK-PEKMMEHLKLFWS-RVN----IPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHhcC-HHHHHHHHHHHHH-hcc----hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44432 2222222222111 001 113455566666666665555443
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=0.00022 Score=81.64 Aligned_cols=367 Identities=13% Similarity=0.015 Sum_probs=176.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCCcch--HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 007530 70 TSNILINFYSKCGLISGARKVFDEMPQRCIVS--WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147 (600)
Q Consensus 70 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~ 147 (600)
.+......|...|++.+|.............. ...........|+++.+...+..+.... ...+..........+..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHH
Confidence 34445566777888888887776665432211 1112233445677777777666552221 11122223333444556
Q ss_pred CCChHHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHHcCCHHHHHHHHccCCC----CCH----HHHHHHHHHH
Q 007530 148 KRDVFECKQLHVFALKAAMD------RN--VFVGTALLDVYAKCGLISDASRVFESMPE----RNE----VTWSSMVAGF 211 (600)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~----~~~~~li~~~ 211 (600)
.|+.+++...+..+.+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 78888888877776543111 11 11222233445567777777776665322 121 2344455556
Q ss_pred HhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHh----CCCC---chhHHHHHHH
Q 007530 212 VQNELYEEALILFRRAQVLGL---EY--NQFTISSVICACAGLAALIQGKQVHAVLCKT----GFGS---NMFAASSLVD 279 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~ 279 (600)
...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+.+.... +... ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 667777777777766643210 01 1123333444555666666666666555442 1100 1112222233
Q ss_pred HHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHccCCHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA--GLHPN--EQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~ 355 (600)
. +...|++++|...+.+.... ...|. ...+..+.......|+.++
T Consensus 582 ~-------------------------------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 582 L-------------------------------LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred H-------------------------------HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH
Confidence 3 33445555555555444331 01111 1222233334445566666
Q ss_pred HHHHHHHHHHhcCCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHcCCCC--CCH----HHHHHHHHHHHHcCChHHH
Q 007530 356 GKSYFDLMVKQHNVLPNVFHY-----SCMIDILGRAGLIHEAYDLILNMPFD--ATA----SMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~~~~~~a 424 (600)
|...++..............+ ...+..+...|+.+.|..++...... ... ..+..+..++...|+.++|
T Consensus 631 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 710 (903)
T PRK04841 631 ARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEA 710 (903)
T ss_pred HHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 666555553211100000000 01123334456666666666544110 011 1123444555666677777
Q ss_pred HHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 425 EIAAKQLFGME------PDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 425 ~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...+++++... +....++..++.+|...|+.++|...+.+..+.
T Consensus 711 ~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 711 EIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77666665521 112234556666777777777777776666543
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=8.9e-05 Score=75.76 Aligned_cols=258 Identities=13% Similarity=0.135 Sum_probs=158.9
Q ss_pred HHHHcCCHHHHHHHHccCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 007530 179 VYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 256 (600)
+-.....+.+|+.+++.+..+++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 3344556666666666665544332 5555666777777777777765432 2344556677777777766
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
++-.+. .|.+.....|-+-..-.-+.|++.+|.++|-.+..|+.. |..|-++|..++.+++..+- .|+
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----Chh
Confidence 654433 233344555555555666777777777777777766643 55677777777777776653 333
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC----CHHHHHH
Q 007530 337 --EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA----TASMWGS 410 (600)
Q Consensus 337 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ 410 (600)
..|-..+..-+-..|++..|...|-+.. -|.+-+.+|...+.+++|.++-+.-+-.. -...|.-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3456666777788899999988876553 35677888888999999988877653111 1223322
Q ss_pred ------HHHHHHHcCChHHHH-------------HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 411 ------LLASCRNYRNLELAE-------------IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 411 ------ll~~~~~~~~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
-+..+-++|-++.|. .+.+-..+ ..-+..+.-++..+...|++++|.+-+-+..+.+
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 122233444444443 33332222 2234577788888899999999988776665543
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=8.1e-05 Score=75.03 Aligned_cols=194 Identities=13% Similarity=0.013 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH---HH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA---LL 177 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li 177 (600)
|..+...+...|+.+++...+....+.....++.... ......+...|+.+.+..+++.+++..+. +...+.. +.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHHH
Confidence 4444444444555555555544444331011111111 11122234455666666666665555322 2222221 11
Q ss_pred HHHHHcCCHHHHHHHHccCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHH
Q 007530 178 DVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 254 (600)
......|..+.+.+.++..... +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 1112234444444444432211 12233344455666666666666666666542 2233444555555566666666
Q ss_pred HHHHHHHHHHhCC-CCch--hHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 255 GKQVHAVLCKTGF-GSNM--FAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 255 a~~~~~~~~~~~~-~~~~--~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
|...+....+..- .++. ..+..+...+...|++++|..+|++.
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666665554321 1111 22334555555566666666655554
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=5.1e-06 Score=90.37 Aligned_cols=200 Identities=10% Similarity=0.069 Sum_probs=169.0
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--------cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--------KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 339 (600)
|.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...++|++..+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 55667788888888999999999999887653 235679999988888898889999999998742 22456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCCHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM----PFDATASMWGSLLASC 415 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 415 (600)
|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+...-+.|..++++. |-+.......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998877 55668999999999999999999998775 4333556666677777
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
.++|+.++++.+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999998899999999999999999999999999988764
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.65 E-value=1.1e-05 Score=71.28 Aligned_cols=201 Identities=12% Similarity=-0.005 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
+...+.-+|.+.|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+-|..+++.. +.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F-- 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF-- 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH--
Confidence 34455566777777777777776666542 2233455555555666666666666666665543 2334444444444
Q ss_pred hhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 007530 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFD 361 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 361 (600)
+|..|++++|...|++......-| -..||..+.-+..+.|+.+.|..+|+
T Consensus 113 -----------------------------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 113 -----------------------------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred -----------------------------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 444555555555555544431111 12344444444455555555555555
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 362 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
+.++... -.......+.....+.|++-.|..+++.. ...+...+.-..+..-...||.+.+-+.-.++....|..
T Consensus 164 raL~~dp--~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 164 RALELDP--QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhCc--CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 5543211 11223444555555555555555555544 222444444444444555556555555555555555554
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6.4e-08 Score=59.18 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=26.8
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.61 E-value=0.0001 Score=75.38 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=137.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH
Q 007530 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289 (600)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 289 (600)
.+.+.|+++.|+.-|-+... ....+.+......+.+|..+++.+..... -..-|..+.+-|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34455556655555543321 22334445556677777777777766432 22335556777888888888
Q ss_pred HHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 007530 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369 (600)
Q Consensus 290 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 369 (600)
|.++|.+.. .++--|..|.+.|++++|.++-.+.. |.......|..-..-.-..|.+.+|.+++-.+.
T Consensus 784 ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 784 AEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 888887542 34556777888888888877765542 222233344444444566777778877765442
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
.|+. .|.+|-+.|..++..++.++..-.--..|-..+..-+...|++..|+..|-++ .-+-.-.++|
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmy 918 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMY 918 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHh
Confidence 3542 46778888888888888877631112345556666777788888888777654 3445667788
Q ss_pred HhcCChHHHHHHHHH
Q 007530 450 AANRRWEEVARARKL 464 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~ 464 (600)
...+.|++|.++-+.
T Consensus 919 k~s~lw~dayriakt 933 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKT 933 (1636)
T ss_pred hhhhhHHHHHHHHhc
Confidence 888888888777543
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=6.8e-08 Score=59.04 Aligned_cols=33 Identities=42% Similarity=0.610 Sum_probs=26.3
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 007530 63 GLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95 (600)
Q Consensus 63 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 95 (600)
|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00019 Score=71.28 Aligned_cols=393 Identities=12% Similarity=0.052 Sum_probs=246.4
Q ss_pred HhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCChhHHH
Q 007530 43 CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--R-CIVSWNTIIGSYTTNGREQEAV 119 (600)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 119 (600)
....|+++.|...|...+... +++...|+.-..+|++.|++++|.+=-.+-.+ | -...|+-...++.-.|++++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 345789999999998888765 56888999999999999999988876554432 3 3457889999999999999999
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHhcCC---ChHHHHHHHHHHHHhCC---CCChhHHHHHHHH----------HHHc
Q 007530 120 ALFINMLREGKTPYSEFTVSSVLCACAAKR---DVFECKQLHVFALKAAM---DRNVFVGTALLDV----------YAKC 183 (600)
Q Consensus 120 ~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~----------y~~~ 183 (600)
.-|.+-++. .+.|...++.+..+..... +.-..-.++......-. ......|..++.. |..-
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999998887 4667778888887762211 11111111111111000 0000112222221 1111
Q ss_pred CCHHHHHHHHccC----------------CCC------------C----------HHHHHHHHHHHHhCCCHHHHHHHHH
Q 007530 184 GLISDASRVFESM----------------PER------------N----------EVTWSSMVAGFVQNELYEEALILFR 225 (600)
Q Consensus 184 g~~~~A~~~f~~m----------------~~~------------d----------~~~~~~li~~~~~~g~~~~A~~~~~ 225 (600)
.++..|.-++... ..| | ..-.-.+.++..+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1122222222111 011 1 1124556777778888999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhhCCHHHHHHHHhcCCC
Q 007530 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN------MFAASSLVDMYAKCGCVVDAYFVFSGIEE 299 (600)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 299 (600)
...... -+..-++....++...|.+......-...++.|.+.- .....-+...|.+.++++.|+..|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 877653 3333444555667777777766666555555442210 11122244578888999999999887542
Q ss_pred c--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 007530 300 K--NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376 (600)
Q Consensus 300 ~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 376 (600)
+ +... ..+....++++.......- +.|+.. -...=.+.+.+.|++..|...+.++++.. +-|...|
T Consensus 327 e~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lY 395 (539)
T KOG0548|consen 327 EHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLY 395 (539)
T ss_pred hhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHH
Confidence 1 2111 1223334555555544433 344432 12222566778999999999999998643 4478899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
..-.-+|.+.|.+.+|+.=.+.. ...|+ ...|.-=..++....+++.|...|.+.++.+|++......+.+++..
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999988765544 33444 45565556667778899999999999999999987766666666554
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00069 Score=72.04 Aligned_cols=355 Identities=13% Similarity=0.098 Sum_probs=202.1
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGM--GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 109 (600)
|....+..++++...+-+.+-.++++.++-. -+..+....|.||-.-.|. +.....+..+++..-|.. .+....
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHH
Confidence 3334455667777767666666777666522 1223334445554443333 223333444433321111 233344
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
..++-+++|+.+|+.. ..+......++. ..++++.|.++-+.. ..+.+|+.+..+-.+.|.+.+|
T Consensus 1059 i~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHH
Confidence 5566778888888763 234444444443 234555555443322 1456788888888888888888
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC
Q 007530 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269 (600)
Q Consensus 190 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 269 (600)
++-|-+. .|+..|.-+|....+.|.|++-++++....+..-.|... +.++-||++.+++.+.+.+.. .|
T Consensus 1124 ieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1124 IESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred HHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 8777443 456778888888888888888888777666655555544 356667777777666554431 23
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC------------------------CcCHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIE------------------------EKNVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
+..-...+.+-+...|.++.|.-+|..+. ..+..+|--.--+|...+.+.-|
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA---- 1268 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA---- 1268 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH----
Confidence 33333334444444444444444443332 13567787777777665554322
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcC--CHHHHHHHH-HcCCC
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAG--LIHEAYDLI-LNMPF 401 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~-~~m~~ 401 (600)
+|-...+.....-..-++..|...|-+++-+.+++... |+.. ....|+-|.-.|.+-. +.-|=+++| .+..+
T Consensus 1269 -QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNi 1344 (1666)
T KOG0985|consen 1269 -QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNI 1344 (1666)
T ss_pred -HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcch
Confidence 33333344456667889999999999999999998764 6554 4556777777777653 222223333 33321
Q ss_pred C------CCHHHHHHHHHHHHHcCChHHH
Q 007530 402 D------ATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 402 ~------p~~~~~~~ll~~~~~~~~~~~a 424 (600)
+ .....|+.|.-.|.+...++-|
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 1233566666555555554443
No 104
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00042 Score=69.61 Aligned_cols=114 Identities=15% Similarity=0.019 Sum_probs=63.6
Q ss_pred CHHHHHHHHHcC-CCCCC--HHHHHHHHHHHHHcCChHHHHHHHH--------HHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 388 LIHEAYDLILNM-PFDAT--ASMWGSLLASCRNYRNLELAEIAAK--------QLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 388 ~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
...+|.+++... .-.|+ ..+.-..+......|+.+.|.+++. .+.+.. ..|++-..+...|.+.+.-+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCc
Confidence 355666665554 22333 3344445555666788888888887 333322 23556666777777777777
Q ss_pred HHHHHHHHhhhCCCccCCc-----e-EEEEEcCcccCcchHHHHHHHHHHHH
Q 007530 457 EVARARKLIRDSEVKKEKS-----K-SWVEIKGKRNHPRIAEIYSKLEKLVE 502 (600)
Q Consensus 457 ~a~~~~~~m~~~~~~~~~~-----~-~~~~i~~~~~~~~~~~~~~~l~~l~~ 502 (600)
.|..++.....--....++ + .|..+.-..+||..+++...+++|++
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 7777776665311000000 0 11111122567888888887777766
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=1.4e-05 Score=75.32 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KN-V---VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE----QT 339 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 339 (600)
....+-.+...|.+.|++++|...|+++.. |+ . .+|..+...|.+.|++++|+..++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777777665543 21 1 34555666666677777777777776653 2221 13
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH
Q 007530 340 YISVLSACSHI--------GMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410 (600)
Q Consensus 340 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 410 (600)
+..+..++... |+.++|.+.|+.+.+.+ |+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 55666666666665432 321 112111111 0000000 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566788899999999999999987664 468889999999999999999999888654
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00068 Score=70.53 Aligned_cols=380 Identities=14% Similarity=0.065 Sum_probs=201.4
Q ss_pred CHhHHHHHHH--HHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC-----------CC
Q 007530 32 ELSTLQATLQ--SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ-----------RC 98 (600)
Q Consensus 32 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~ 98 (600)
|..|-..++. -|...|+.+.|..-...+. +..+|..+.+|+.+..+++-|.-.+-.|.+ .|
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444443 2445677777665554432 345788888888888888877777776653 11
Q ss_pred c-chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 99 I-VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 99 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
. ..=....-...+-|..++|..+|++-.+.+ .+=+.|-..|.+++|.++-+.--+..+. .+|..-.
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 1 111112222345678888888887765532 2334455677788777765432222222 2344444
Q ss_pred HHHHHcCCHHHHHHHHccCCC-----------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007530 178 DVYAKCGLISDASRVFESMPE-----------------------RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~-----------------------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 234 (600)
.-+-..++.+.|++.|++... +|...|.-...-.-..|+.+.|+.+|...+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 444556677777777665432 2333444444444456788888887776553
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC----------cC--H
Q 007530 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE----------KN--V 302 (600)
Q Consensus 235 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----------~~--~ 302 (600)
|-++....+-+|+.++|.++-++- -|....-.|..+|-..|++.+|...|.+... .| .
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD 1010 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 445556667778888887775442 2555556688888888888888888876531 11 1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH---------HHHHHHhcCCCccH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY---------FDLMVKQHNVLPNV 373 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~~~~~~~~~p~~ 373 (600)
..||.-+ .....+.-.|-.+|++. |. -+...+..|-+.|.+.+|+++ ++.+.++..-..|+
T Consensus 1011 ~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1011 RLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 2222211 11111222333333332 11 111223345556666655542 33333333333455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc---CCCCC---cchHHHHHH
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG---MEPDN---AGNHLLLSN 447 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~---~~~~~~l~~ 447 (600)
...+--.+.+....++++|..++-... -|..-+..| ...+..-.+++.+.|.- -+|+. ......++.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 666666666666677777766654321 122222222 23334444444444332 11111 124456777
Q ss_pred HHHhcCChHHHHHHH
Q 007530 448 IYAANRRWEEVARAR 462 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~ 462 (600)
.|.++|.+..|.+-|
T Consensus 1154 ~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhccchHHHHHHH
Confidence 777777776665544
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.48 E-value=0.00013 Score=77.39 Aligned_cols=421 Identities=14% Similarity=0.033 Sum_probs=235.8
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc---chHH--HHHHHH
Q 007530 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI---VSWN--TIIGSY 109 (600)
Q Consensus 35 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~--~li~~~ 109 (600)
.|..+-..|...-+...|...|....+.. ..|...+..+.+.|++...++.|..+.-...+.+. ..|| -.--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34445555554445666677776665443 44667778888999999999999888544433221 2233 233335
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
...++..+|+.-|+...+. -|.|...|..+..+|...|....|.++|..+....+. +.+.---..-+-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHH
Confidence 6667777777777777765 3556667777777777777777777777766554332 222222233334455666666
Q ss_pred HHHHccCCCC----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHH------
Q 007530 190 SRVFESMPER----------NEVTWSSMVAGFVQNELYEEALILFRRAQ-------VLGLEYNQFTISSVICAC------ 246 (600)
Q Consensus 190 ~~~f~~m~~~----------d~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~g~~p~~~t~~~ll~a~------ 246 (600)
...+..+... -..++-.+...+.-.|-..+|.+++++-. ......+...+..+-.+|
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 6665544320 11122222222333333333333333221 111111122222111111
Q ss_pred -----------------HccCch---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----hC----CHHHHHHHHh
Q 007530 247 -----------------AGLAAL---I---QGKQVHAVLCKTGFGSNMFAASSLVDMYAK----CG----CVVDAYFVFS 295 (600)
Q Consensus 247 -----------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----~g----~~~~A~~~~~ 295 (600)
-..+.. + .|.+.+- ....+..+...|..|+.-|.+ +| +...|...+.
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 111111 1 0111110 011112234444445444443 22 2234555555
Q ss_pred cCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-
Q 007530 296 GIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP- 371 (600)
Q Consensus 296 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 371 (600)
... ..+...||+|.-. ...|.+.-|...|-+-... .+-+..+|..+.-.|....+++.|...|.... .+.|
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~ 882 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPL 882 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCch
Confidence 433 3577888887655 5556666666666555443 23456788888888888999999999999875 4555
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCChHH----------HHHHHHHHhcC
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-------PFDATASMWGSLLASCRNYRNLEL----------AEIAAKQLFGM 434 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~ 434 (600)
+...|--........|+.-++..+|..- +--|+...|.....-...+|+.++ |--..++.+.-
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 4555655555555678888888888652 334566666655555555665544 33445555667
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.|+...+|...+......+.+++|.+...+..
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 89888899999888888888888888766653
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=4e-05 Score=70.10 Aligned_cols=305 Identities=12% Similarity=0.053 Sum_probs=159.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHH-HHHHHHh
Q 007530 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSS-MVAGFVQ 213 (600)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~-li~~~~~ 213 (600)
-+.+++..+.+..++..+.+++..-.+..+. +....+.|...|-...++..|-..++++.. |...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3555555556666677777766666555432 445556666677777777777777766654 22222221 1234455
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH
Q 007530 214 NELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291 (600)
Q Consensus 214 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 291 (600)
.+.+..|+++...|... |+...-..-+.+. ...+++..++.+.++....| +..+.+...-...+.|+.+.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 66666777766666532 2221111111111 12334444444433332211 2222223333334445555555
Q ss_pred HHHhcCCC----cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 007530 292 FVFSGIEE----KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367 (600)
Q Consensus 292 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 367 (600)
+-|+...+ .....||.-+.-| +.|+++.|+++..++++.|++-... ++ .|...++..+ +.-
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-----rsv 229 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-----RSV 229 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-----hcc
Confidence 55544432 2233444333222 3344455555555555544432111 00 0000000000 000
Q ss_pred CCCccHHHHHHHH-------HHHHhcCCHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 368 NVLPNVFHYSCMI-------DILGRAGLIHEAYDLILNMP----FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 368 ~~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
| .|-.-+-+.++ ..+.+.|+++.|.+-+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|
T Consensus 230 g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 230 G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0 01112223333 34568899999999999995 23467776654322 235667777888888889999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 437 DNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
-.+.++..+.-+|++..-++-|..++-+-
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 88899999999999999999998887543
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=6.7e-05 Score=82.08 Aligned_cols=235 Identities=15% Similarity=0.106 Sum_probs=181.1
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC---CCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AM---DRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 122 ~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
|++.... -|.....|..-+......++++.|+++.+++++. ++ +.-..+|.+++++-..-|.-+...++|++..
T Consensus 1447 ferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3444443 4556677888888888999999999999988875 22 1234678888888888888888999999887
Q ss_pred CC-C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCchhHH
Q 007530 198 ER-N-EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSNMFAA 274 (600)
Q Consensus 198 ~~-d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 274 (600)
+- | ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-- .......
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 63 3 456888999999999999999999999865 345667788888888888888999999998887531 1246667
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHc
Q 007530 275 SSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSH 349 (600)
Q Consensus 275 ~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 349 (600)
.-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..-.+
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 7788888999999999999998764 35678999999999999999999999999998887754 345555555444
Q ss_pred cCCHHHHHHH
Q 007530 350 IGMVEKGKSY 359 (600)
Q Consensus 350 ~g~~~~a~~~ 359 (600)
.|+-+.++.+
T Consensus 1684 ~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1684 HGDEKNVEYV 1693 (1710)
T ss_pred cCchhhHHHH
Confidence 5554443333
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.00095 Score=76.43 Aligned_cols=220 Identities=13% Similarity=-0.022 Sum_probs=135.2
Q ss_pred HHHhcCChHHHHHHHccCCC----CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCC-C----CCChh--hHHHHHHHH
Q 007530 77 FYSKCGLISGARKVFDEMPQ----RCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-T----PYSEF--TVSSVLCAC 145 (600)
Q Consensus 77 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~----~p~~~--t~~~ll~~~ 145 (600)
.....|+++.+...++.++. .+..........+...|++++|...+......-. . .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456888888888887752 2233333444555678999999999988765310 1 11111 122223445
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHccCCC-------CC--HHHHHHHHHHHH
Q 007530 146 AAKRDVFECKQLHVFALKAAMDRNV----FVGTALLDVYAKCGLISDASRVFESMPE-------RN--EVTWSSMVAGFV 212 (600)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~d--~~~~~~li~~~~ 212 (600)
...|+++.+...++...+.-...+. ...+.+...+...|++++|...+++... +. ..+++.+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999998774222222 2446677778889999999998877642 11 234556677788
Q ss_pred hCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhC--CCC--chhHHHHHHHHH
Q 007530 213 QNELYEEALILFRRAQVL----GLE--Y-NQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGS--NMFAASSLVDMY 281 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~y 281 (600)
..|++++|...+++.... +.. | ....+..+...+...|++++|...+....... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886542 221 1 22334444555677799999999888776531 111 122233344445
Q ss_pred HhhCCHHHHHHHHhc
Q 007530 282 AKCGCVVDAYFVFSG 296 (600)
Q Consensus 282 ~~~g~~~~A~~~~~~ 296 (600)
...|+.+.|...+..
T Consensus 623 ~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 623 LARGDLDNARRYLNR 637 (903)
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555554443
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=3e-05 Score=70.21 Aligned_cols=147 Identities=7% Similarity=0.058 Sum_probs=108.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 007530 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 388 (600)
+..|...|+++.+..-.+.+. .|. ..+...++.+++...++..++.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 345777777766543332221 111 01223566777777777776432 4577888888889999999
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHH-HHcCC--hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 389 IHEAYDLILNM-PFDA-TASMWGSLLASC-RNYRN--LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++..+..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998877 3444 567777777764 56676 5999999999999999999999999999999999999999999
Q ss_pred HhhhCC
Q 007530 464 LIRDSE 469 (600)
Q Consensus 464 ~m~~~~ 469 (600)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997654
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=1.1e-05 Score=68.00 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
....-.+...+...|++++|..+|+-. ...| +..-|..|...|...|++++|...+.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566677899999999999877 3344 57889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHH
Q 007530 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMK 505 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~ 505 (600)
..|+.+.|.+.|+...... ..+|+..++.+..+..+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999876532 245666666666555555543
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=1.1e-05 Score=69.14 Aligned_cols=122 Identities=11% Similarity=-0.038 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF 401 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 401 (600)
.+|++..+ +.|+. +.....++...|++++|...|+..+... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 34443 3345556667777777777777765321 235566677777777777777777777765 22
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 402 DA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 402 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 56677777777777777777777777777777777776666655543
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=8.7e-06 Score=69.69 Aligned_cols=107 Identities=7% Similarity=-0.142 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
.+++..+ .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455554 335653 556778889999999999999987 3444 67899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 436 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
|+++..+..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987654
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=1.8e-05 Score=81.13 Aligned_cols=209 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
+...+...|-..+|+.+|++... +..++..|...|+..+|..+..+-.+ -+||...|..+.+..-...-
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 44455556666666666655432 34455555555655566555555554 24555555555555555555
Q ss_pred HHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 007530 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 366 (600)
+++|.++++....+--..|+.. ..++++++++.+.|+.-.+.. +-...||..+..+..+.++++.+.+.|...+
T Consensus 473 yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv-- 546 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV-- 546 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh--
Confidence 5555555554433211111111 112444555555554433321 1122344444444444455555555444443
Q ss_pred cCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 367 HNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 367 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
...| +...||.+-.+|.+.|+..+|...+++. . ...+-.+|...+-.....|.+++|.+++.+++.
T Consensus 547 -tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 -TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 1222 2334444444444444444444444433 1 012223344444444444444444444444443
No 116
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.00026 Score=68.96 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHARS--VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 361 (600)
+++++..++++.+ ++..+|+.-.-.+.+.|+. ++++.+++++.+.. +-|...|..-..++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555544432 3344455443334444432 55677777776642 2245666666666677777777777777
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhc---CC----HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHH
Q 007530 362 LMVKQHNVLPNVFHYSCMIDILGRA---GL----IHEAYDLILNM-PFDA-TASMWGSLLASCRNY----RNLELAEIAA 428 (600)
Q Consensus 362 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~ 428 (600)
.+++.. .-+...|+.....+.+. |. .+++.++..++ ...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 776432 22344454444444333 22 23555555333 3344 578888888888773 3456788888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhc
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+++..+|+++.....|+.+|...
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhh
Confidence 888888999888889999999863
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.32 E-value=0.0032 Score=59.27 Aligned_cols=301 Identities=8% Similarity=-0.004 Sum_probs=181.2
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcchHHHHH---HHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHHhcCC
Q 007530 74 LINFYSKCGLISGARKVFDEMPQRCIVSWNTII---GSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSVLCACAAKR 149 (600)
Q Consensus 74 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~ll~~~~~~~ 149 (600)
|-..+...|++.+|+.-|....+-|...|-++. ..|...|+...|+.=|.+.++ .+||-..- ..-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcc
Confidence 344455567777777777777776666666654 356667777777777777666 45553221 11223355667
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
.++.|..-|+.+++..+..+ ....++.+.-..++-+. ....+..+...|+...|+.....+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 77777777777766543211 11112222111111111 11234445566777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHh----
Q 007530 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVV---- 303 (600)
Q Consensus 230 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---- 303 (600)
.. +.|...+..-..+|...|.+..|..=+..+-+..-. +....--+-..+...|+.+.++...++..+ ||..
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 42 346666666666777777777776666666554422 333333455666777777777777766654 3221
Q ss_pred HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 007530 304 LWNTM---------ISGFSRHARSVEVMILFEKMQQAGLHPNEQTY---ISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371 (600)
Q Consensus 304 ~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 371 (600)
.|-.+ +......+++.++++-.+...+.......+++ ..+-.++...+.+.+|++.-.++. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCc
Confidence 11111 12334567888888888888775322123333 344456677899999999988886 5567
Q ss_pred c-HHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 372 N-VFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 372 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
+ +.++.--.++|.-...+++|+.=|++.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5 778877788888888999999888876
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=6.8e-05 Score=76.97 Aligned_cols=215 Identities=13% Similarity=0.135 Sum_probs=167.3
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|-+|...|+..+|.++..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667778899999999999999999975 5688889999999999999999988877 4789999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
......-+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876432 1111222233478899998888753 4455 46789999888899999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc----ccCcchHHHHHHHHH
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK----RNHPRIAEIYSKLEK 499 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~l~~ 499 (600)
|.+.|...+.++|++...++.++.+|.+.|+-.+|...+++..+-+-. .|....++ ..-+..+++.....+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876622 33333333 344555665544444
Q ss_pred H
Q 007530 500 L 500 (600)
Q Consensus 500 l 500 (600)
+
T Consensus 613 l 613 (777)
T KOG1128|consen 613 L 613 (777)
T ss_pred H
Confidence 3
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=8.2e-05 Score=70.02 Aligned_cols=182 Identities=12% Similarity=-0.007 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CH---hHH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG-S-NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NV---VLW 305 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~ 305 (600)
.....+......+...|+++.|...+..+.+..-. + ....+..+...|.+.|++++|...|+++.+ | +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567777888899999999999999999886421 1 124667789999999999999999998864 2 12 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 007530 306 NTMISGFSRH--------ARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376 (600)
Q Consensus 306 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 376 (600)
..+..++.+. |+.++|++.|+++... .|+.. ....+... .. . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH-H--------HHH
Confidence 5555566554 7889999999999875 45532 22111111 00 0 0000 0 012
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
..+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788889999998888776 3233 356888888999999999999998888766554
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=5.6e-05 Score=75.61 Aligned_cols=245 Identities=13% Similarity=0.052 Sum_probs=163.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHH
Q 007530 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 290 (600)
+.++|+..+|.-.|+...... +-+...|.-|....+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777777666542 2244566666666666666666777776666654 44566666677777777777777
Q ss_pred HHHHhcCCCcC-HhHHHHHH---------HHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007530 291 YFVFSGIEEKN-VVLWNTMI---------SGFSRHARSVEVMILFEKMQQ-AGLHPNEQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
.+.++.-.... ...|...- +.+..........++|-++.. .+..+|......|.-.|--.|.+++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77766542100 00000000 111222233455566666544 45346666666666667888999999999
Q ss_pred HHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 360 FDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA-SMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 360 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
|+.++. +.| |...||.|...++...+.++|...|++. .++|.. .++..|.-+|...|.+++|...+-.++.+.+
T Consensus 453 f~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999974 456 7789999999999999999999999887 778884 5888899999999999999999999987654
Q ss_pred CC----------cchHHHHHHHHHhcCChHHHHH
Q 007530 437 DN----------AGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 437 ~~----------~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
.. ..++..|-.++...++.|-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 41 1355566566666666654433
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=0.00014 Score=65.85 Aligned_cols=155 Identities=9% Similarity=0.049 Sum_probs=112.0
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 357 (600)
+-.|...|+++.+....+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777766554443322211 01223566778888888877753 456778888888999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHH-HHhcCC--HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDI-LGRAGL--IHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
..|+...+.. +.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887432 2366777777776 467777 58999999887 3444 57788888899999999999999999999
Q ss_pred cCCCCCcchHH
Q 007530 433 GMEPDNAGNHL 443 (600)
Q Consensus 433 ~~~p~~~~~~~ 443 (600)
++.|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 98887665443
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=6.1e-05 Score=74.83 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=65.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 104 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
+|+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++..+ .+..........+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 34444445566666666666665542 23 233345555555555556666555554432 2445555555556666
Q ss_pred CCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 184 g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
++.+.|.++.+++.+ | +-.+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666554 3 33466666666666666666666666553
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00011 Score=78.89 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=111.7
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYS 377 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 377 (600)
.++..+-.|.....+.|..++|..+++...+ +.||.. ....+...+.+.+.+++|....+.... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577788888888899999999999999888 467654 566778888999999999999998863 244 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 378 CMIDILGRAGLIHEAYDLILNMP-FDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
.+..++.+.|++++|..+|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+....|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88888999999999999999872 2344 788999999999999999999999999986655444444
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=2.4e-06 Score=52.99 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 236 (600)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=6.7e-05 Score=67.93 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 007530 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSL 411 (600)
Q Consensus 334 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 411 (600)
.|+......+-.++...|+-+....+...... .-..|......++....+.|++.+|...+++. +-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44333224455566666777776666665532 22334455556777777788888888777776 345667788888
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 412 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
..+|.+.|+++.|...+.+++++.|+++..++.|+..|.-.|+.++|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888888888888888888888777666543
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=2.7e-06 Score=52.74 Aligned_cols=34 Identities=35% Similarity=0.719 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999997
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00061 Score=74.14 Aligned_cols=234 Identities=12% Similarity=0.074 Sum_probs=128.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCC
Q 007530 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215 (600)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 215 (600)
..+..|+..+...+++++|.++.+..++..+. ....|-.+...|.+.++.+++..+ .++.......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 34444444444445555555554443333221 222222233345555554443332 2333333444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 216 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
++.-+..+...|... .-+...+-.+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 443333344444432 2233456666777777777777777777777776 66777788888888887 8888877766
Q ss_pred cCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 007530 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374 (600)
Q Consensus 296 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 374 (600)
+. +..|...+++.++.++|.++... .|+.+. |..+++ .+....+..--+.
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~ 224 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVG 224 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHH
Confidence 54 23366677888899999988875 344332 222322 2222222223333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCR 416 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 416 (600)
++--+...|-..++++++.++++.+ ...| |.....-++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 5555566667777777877777766 3233 3445555555554
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.15 E-value=0.012 Score=59.00 Aligned_cols=389 Identities=13% Similarity=0.108 Sum_probs=197.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ--R-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 141 (600)
+-|..+|+.||.-+... .++++++.++++.. | ....|..-|..-....+++....+|.+-+..- + +...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h--hHhHHHHH
Confidence 66889999999988665 99999999998875 3 45679999999999999999999999887753 3 45556555
Q ss_pred HHHHhc-CCChHHHH----HHHHHHH-HhCCCCCh-hHHHHHHHH---------HHHcCCHHHHHHHHccCCC-C-----
Q 007530 142 LCACAA-KRDVFECK----QLHVFAL-KAAMDRNV-FVGTALLDV---------YAKCGLISDASRVFESMPE-R----- 199 (600)
Q Consensus 142 l~~~~~-~~~~~~a~----~~~~~~~-~~g~~~~~-~~~~~li~~---------y~~~g~~~~A~~~f~~m~~-~----- 199 (600)
+.--.+ .++....+ +.|+.++ +.|+++-. ..|+..+.. |....+++..+++++++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 554433 23333322 3344333 34544332 235554443 3445567778888888764 2
Q ss_pred ----CHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCchHHHHH--HHHHHHH
Q 007530 200 ----NEVTWSSMVAGFV-------QNELYEEALILFRRAQV--LGLEYNQFTISSVICACAGLAALIQGKQ--VHAVLCK 264 (600)
Q Consensus 200 ----d~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~--~~~~~~~ 264 (600)
|-..|..=|+... +...+..|.+++++... .|+.-+..+ .-..|-.++..+ ++...++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHH
Confidence 2223322222221 13345667777776653 344333222 011111111111 1111111
Q ss_pred -----------------------------hCCCCchhHH-----HHHHHHHHhhCCHHH-------HHHHHhcCCC----
Q 007530 265 -----------------------------TGFGSNMFAA-----SSLVDMYAKCGCVVD-------AYFVFSGIEE---- 299 (600)
Q Consensus 265 -----------------------------~~~~~~~~~~-----~~l~~~y~~~g~~~~-------A~~~~~~~~~---- 299 (600)
.+..|++... ...-+.+...|+..+ +..++++...
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1222221110 011122222333222 2222222111
Q ss_pred cCHhHHHHHHHHHH---hcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHH
Q 007530 300 KNVVLWNTMISGFS---RHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVF 374 (600)
Q Consensus 300 ~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 374 (600)
.+..+|..+..--- .-+..+...+.+++....- +.|+ .+|..+++.-.+..-++.|..+|.++.+ .+..+ ++.
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVf 403 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhh
Confidence 11122222211100 0012334444444444321 2222 3455566666666666677777776643 34444 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcC--CCC-CcchHHHHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGM--EPD-NAGNHLLLSNIY 449 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~ 449 (600)
++++++.-|+ .++.+-|.++|+-- ..-+| +..-...+.-+...++-..+..+|++++.. .|+ ....|..++.--
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 6666666443 45566666666532 21223 333345555556666666677777776653 332 224556666656
Q ss_pred HhcCChHHHHHHHHHhhh
Q 007530 450 AANRRWEEVARARKLIRD 467 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~ 467 (600)
+.-|+...+.++-+++..
T Consensus 483 S~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 666666666666555543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.00069 Score=66.87 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=77.4
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~ 425 (600)
...|.+++|+..++.+++. .+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+|.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3456777777777776542 2335555566666777777777777777665 34454 556666677777777777777
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.++.....-+|+++..|..|+.+|...|+..++...+.++.
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777777777777777777777777777776666665543
No 130
>PLN02789 farnesyltranstransferase
Probab=98.13 E-value=0.0015 Score=63.80 Aligned_cols=177 Identities=12% Similarity=-0.008 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
++.+-..+...++.++|+.++.++++.. |-+..+|+.--.++...+ +++++...++.+.+..++ +..+|+...-++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 4444445556677777777777777752 334444555444555555 467777777777776544 555566555455
Q ss_pred HHcCCH--HHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---Cch
Q 007530 181 AKCGLI--SDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL---AAL 252 (600)
Q Consensus 181 ~~~g~~--~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~~ 252 (600)
.+.|+. +++..+++.+.+ +|..+|+.....+.+.|+++++++.+.++.+.+.. |...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555542 556666665543 46677777777777778888888888888776532 334444333333332 111
Q ss_pred ----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007530 253 ----IQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283 (600)
Q Consensus 253 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 283 (600)
+........++... +.|...|+-+...+..
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 23333333444432 3445555555555544
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00023 Score=64.50 Aligned_cols=151 Identities=11% Similarity=0.027 Sum_probs=83.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 387 (600)
+-..+...|+.+....+....... -.-|.......+....+.|++.+|...+++... .-++|...|+.+.-.|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334445555555555555443321 111222333355555556666666666666542 33455666666666666666
Q ss_pred CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007530 388 LIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 388 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 461 (600)
++++|..-|.+. .+.| ++...+.|...+.-.|+++.|+.++.......+.+..+-..|.-+-...|++++|..+
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666666555544 2222 3455566666666666666666666666666665666666666666666666666554
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.11 E-value=5.2e-05 Score=64.35 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556666777778888887777765 3233 56777777778888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHhhhCC
Q 007530 451 ANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~ 469 (600)
..|++++|...++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888776643
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=8e-05 Score=74.00 Aligned_cols=122 Identities=13% Similarity=0.045 Sum_probs=95.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~ 417 (600)
..+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. . .+.+...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566666777788888888887543 254 3445677777777777887777765 2 22356667777777888
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.++++.|..+++++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999886
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=7.3e-06 Score=50.40 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 234 (600)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0016 Score=64.33 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=116.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSC 378 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 378 (600)
....+....-.+...|++++|+..++.+... .||..- .......+...++.++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 3444444555667789999999999998885 555544 44556678899999999999999974 3565 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 379 MIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
+.++|.+.|++++|..+++.. ..+.|+..|..|..+|...|+..++.. ..+..|.-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHH
Confidence 889999999999999999887 344578999999999999998776554 4556688899999
Q ss_pred HHHHHHHHhhhCC
Q 007530 457 EVARARKLIRDSE 469 (600)
Q Consensus 457 ~a~~~~~~m~~~~ 469 (600)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1e-05 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 335 (600)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.99 E-value=0.0012 Score=71.82 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=156.9
Q ss_pred cCCCCC-CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHH
Q 007530 26 ANANAT-ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN 103 (600)
Q Consensus 26 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 103 (600)
.+...| +...+..|+..+...++++.|.++.+..++. .|+ ...|-.+...|.+.++.+++..+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------- 87 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------- 87 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------
Confidence 334444 5567888888888889999999988866554 333 22333333356666665554444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 104 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
.++..+....++.-..-+...|.. .+-+...+..+..+|.+.|+.+++..+++++++..+ .|+.+.|.+.-.|+..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh
Confidence 344445555566334444445554 345667889999999999999999999999999984 4889999999999999
Q ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 184 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
++++|++++.+. +..|...+++.++.+++.++... .|+.+.+ -.++.+.+.
T Consensus 164 -dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~ 214 (906)
T PRK14720 164 -DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVL 214 (906)
T ss_pred -hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHH
Confidence 999999887654 33477788899999999998875 3433222 112222222
Q ss_pred Hh-CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHH
Q 007530 264 KT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFS 313 (600)
Q Consensus 264 ~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 313 (600)
.+ |..--..++-.|-..|.+.++++++..+|..+.+ .|..+..-++..|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22 2233344455566667777777777777776653 34455555666555
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.0012 Score=71.20 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=82.2
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
++..+-.|.....+.|.+++|..+++...+. -|-+..........+.+.+.+++|....++.++..+. +....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 4556666666666667777777777766664 3444455566666666667777777766666666543 555566666
Q ss_pred HHHHHcCCHHHHHHHHccCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..+.+.|++++|..+|++...+ +..+|..+...+...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666667777777777666532 245666666666667777777777766654
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.012 Score=53.79 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 337 (600)
+.+.+.......+......-...|.+.|++++|.+.......-+....|. ..+.+..+.+-|...+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 33444444434443444444455667777777777776643333333332 2344556667777777777652 245
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 007530 338 QTYISVLSACSH----IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSL 411 (600)
Q Consensus 338 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 411 (600)
.|.+-|..++.+ .+.+..|.-+|++|.+ ...|+..+.+-+..+....|++++|+.++++. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 566555555443 3456667777777743 24566666666666666667777777666655 222345555555
Q ss_pred HHHHHHcCCh-HHHHHHHHHHhcCCCCCc
Q 007530 412 LASCRNYRNL-ELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 412 l~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 439 (600)
+......|.. +-..+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5544444433 444455566666666543
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.84 E-value=0.00064 Score=57.55 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=84.0
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 007530 324 LFEKMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF 401 (600)
Q Consensus 324 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 401 (600)
++++... ..|+. .....+...+...|++++|.+.|+.+.... +.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444 34433 345556667778888999988888886432 336677788888888889999998888776 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 402 DA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 402 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677888888888999999999999999999998764
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.84 E-value=0.066 Score=57.12 Aligned_cols=378 Identities=14% Similarity=0.080 Sum_probs=184.0
Q ss_pred hcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 007530 80 KCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (600)
+.|+.++|..+++.... .|..|...+-.+|...|+.++|..+|++..+. -|+......+..++.+.+++.+-.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666654432 25556666666666666666666666666554 2445556666666666666665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHcC----------CHHHHHHHHccCCCCC--HHH---HHHHHHHHHhCCCHHHHH
Q 007530 157 LHVFALKAAMDRNVFVGTALLDVYAKCG----------LISDASRVFESMPERN--EVT---WSSMVAGFVQNELYEEAL 221 (600)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~~~f~~m~~~d--~~~---~~~li~~~~~~g~~~~A~ 221 (600)
+--++-+. ++.+.+.+=++++.+...- -+.-|.+.++.+.+.+ ..+ .-.-....-..|.+++|+
T Consensus 132 aa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 54444443 2224444334444443321 1234555555554432 000 011112233456677777
Q ss_pred HHHH-HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------------h
Q 007530 222 ILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK----------------C 284 (600)
Q Consensus 222 ~~~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----------------~ 284 (600)
+++. ...+.-..-+...-+--+..+...+++.+..++-.+++..|... |...++.+.+ .
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~ 286 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLS 286 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhh
Confidence 7773 33332222233344455555666677777777777776665322 2222222211 1
Q ss_pred CCHHHHHHHHhcCCC---cCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 285 GCVVDAYFVFSGIEE---KNVV-LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 285 g~~~~A~~~~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
+.++...+..++... +++. ++--+..-+-.-|+.++++..|-+- -|-.| .+..=+..|...=..++-..++
T Consensus 287 ~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 287 KSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred hhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHH
Confidence 222222222222211 1211 1222222233456666655444322 12222 1111122222222223333333
Q ss_pred HHHHHhcCCCccHH-------HHHHHHHHHHhcCCH-----HHHHHHHHcC------C------CCCCH---------HH
Q 007530 361 DLMVKQHNVLPNVF-------HYSCMIDILGRAGLI-----HEAYDLILNM------P------FDATA---------SM 407 (600)
Q Consensus 361 ~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~m------~------~~p~~---------~~ 407 (600)
..... ..++.. -+.+.+....-.|.+ +.-..++++. + .-|.. .+
T Consensus 362 ~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLa 438 (932)
T KOG2053|consen 362 SKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLA 438 (932)
T ss_pred HHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHH
Confidence 33321 111111 122222222222311 1112222111 1 11211 24
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccC
Q 007530 408 WGSLLASCRNYRNLE---LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473 (600)
Q Consensus 408 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 473 (600)
-+.|+..|.+.++.. +|+.+++..+...|.|+.+-..|+.+|.-.|-...|.+.++.+.-+.|..+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 467778888877754 667777777888999988888999999999999999999999876666544
No 142
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.038 Score=53.84 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 353 (600)
.+.-+.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-..+... .- .++.|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCH
Confidence 333455566788999999999998889999999999999999999877665432 12 347888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 354 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999888763 1244678889999999998775553
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.6e-05 Score=46.67 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=26.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREG 129 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 129 (600)
++||++|++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 478999999999999999999999998876
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.4e-05 Score=46.80 Aligned_cols=31 Identities=32% Similarity=0.642 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGL 232 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 232 (600)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.0012 Score=56.77 Aligned_cols=83 Identities=18% Similarity=0.034 Sum_probs=42.0
Q ss_pred HHHHhcCCHHHHHHHHHcCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 381 DILGRAGLIHEAYDLILNMP-FDATA----SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
..+...|++++|...|+... ..||. .....|...+...|++++|+..++.. .-.+-.+..+..++++|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 44444555555555554441 11221 12333444455555555555555442 12222344556677777777777
Q ss_pred HHHHHHHHH
Q 007530 456 EEVARARKL 464 (600)
Q Consensus 456 ~~a~~~~~~ 464 (600)
++|...|+.
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 777776654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.77 E-value=0.0017 Score=55.66 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh--hHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYS---EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV--FVGTAL 176 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l 176 (600)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44455554 3677777777777777753 323 122333445666777777777777777776533322 234446
Q ss_pred HHHHHHcCCHHHHHHHHccCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007530 177 LDVYAKCGLISDASRVFESMPER--NEVTWSSMVAGFVQNELYEEALILFRR 226 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~m~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (600)
...+...|++++|...++....+ ....+......|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777777788877777665443 334555666777777777777777764
No 147
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0081 Score=54.79 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=75.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC-CHHHHHHHHHHHHh-
Q 007530 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQ- 213 (600)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~- 213 (600)
.....-...|...+++++|.+..... - +..+...=+..+.+..+++-|++.++.|.+- +..+.+.|..++.+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~l 182 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKL 182 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 33334444567777777777665441 1 2233333344455667777777777777764 33445544444433
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 214 ---NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 214 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
.+...+|.-+|++|-+. ..|+..+.+....++...|++++|..++..++...
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 45577777777777543 46777777777777777777777777777776654
No 148
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.73 E-value=0.066 Score=53.89 Aligned_cols=432 Identities=11% Similarity=0.091 Sum_probs=252.8
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcchHHHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTI 105 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l 105 (600)
.+|-|..+|+.+++-+... ..++++..++++... ++..+..|..-|..-.+..+++...++|.+... -++..|..-
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4566889999999987766 789999999999853 466788999999999999999999999998654 478888887
Q ss_pred HHHHHc-CCChhH----HHHHHHHHHH-cCCCCCCh-hhHHHHH---HH------HhcCCChHHHHHHHHHHHHhCCCCC
Q 007530 106 IGSYTT-NGREQE----AVALFINMLR-EGKTPYSE-FTVSSVL---CA------CAAKRDVFECKQLHVFALKAAMDRN 169 (600)
Q Consensus 106 i~~~~~-~g~~~~----A~~~~~~m~~-~g~~~p~~-~t~~~ll---~~------~~~~~~~~~a~~~~~~~~~~g~~~~ 169 (600)
|+---+ +|+... ..+.|+-.+. .| +.+-. ..|+.-+ .. +....+++..++++.+++..-+..-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 764333 233322 2333333333 33 32221 2233332 22 2333456667777777765432211
Q ss_pred hhHHHH------HHHH-------HHHcCCHHHHHHHHccCCC------C---------------CHHHHHHHHHHHHhCC
Q 007530 170 VFVGTA------LLDV-------YAKCGLISDASRVFESMPE------R---------------NEVTWSSMVAGFVQNE 215 (600)
Q Consensus 170 ~~~~~~------li~~-------y~~~g~~~~A~~~f~~m~~------~---------------d~~~~~~li~~~~~~g 215 (600)
...|+- =|+- --+...+-.|++++++... + -+..|-.+|.-=..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 112221 1110 0122334556666554321 0 1122444443322221
Q ss_pred CH--------HHHHHHHHHH-HHcCCCCCHHH-HHHH----HHHHHccCc-------hHHHHHHHHHHHHhCCCCchhHH
Q 007530 216 LY--------EEALILFRRA-QVLGLEYNQFT-ISSV----ICACAGLAA-------LIQGKQVHAVLCKTGFGSNMFAA 274 (600)
Q Consensus 216 ~~--------~~A~~~~~~m-~~~g~~p~~~t-~~~l----l~a~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~ 274 (600)
.- ....-.+++. .-.+.-|+..- +... -..+...|+ -+++..+++..+..-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111222221 12233343321 1111 112333343 34445555555544333344444
Q ss_pred HHHHHHHHhhCC---HHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 007530 275 SSLVDMYAKCGC---VVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSA 346 (600)
Q Consensus 275 ~~l~~~y~~~g~---~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 346 (600)
.++.+.--..-+ .+.....+++.. ..-..+|-..++.-.+..-...|..+|.+..+.+..+ +.....+++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 444332111111 333333333333 2233567777777777777899999999999998888 56667777776
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCh
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM---PFDAT--ASMWGSLLASCRNYRNL 421 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~ 421 (600)
++ .++.+.|.++|+.=.+.+|-.| ..-.+.++-+...++-..|..+|++. .+.|| ..+|..++.--..-|++
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 65 4889999999998877665443 45577889999999999999999987 23344 47999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 422 ELAEIAAKQLFGMEPDN----AGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
..+..+-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 99999988887654421 123345566676666655444444444
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00041 Score=53.94 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
+..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344556666777777777777765 2233 34566777777777888888888888888888887778888888888888
Q ss_pred ChHHHHHHHHHhhh
Q 007530 454 RWEEVARARKLIRD 467 (600)
Q Consensus 454 ~~~~a~~~~~~m~~ 467 (600)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.032 Score=50.68 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=92.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
-..|++++|+++++...+.. +-|.+++.-=+...-..|.--+|++-+....+. +.-|.+.|.-+.+.|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 44688889999999888864 445666665555555567777888877777653 467888999999999999999999
Q ss_pred HHHHHcC-CCCCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCCCcch
Q 007530 393 YDLILNM-PFDAT-ASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 393 ~~~~~~m-~~~p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.-.++++ -+.|. +..+..+...+.. ..+++.+.+.+.+++++.|.+...
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 9888887 34454 4444445444433 457889999999999999965543
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=5.6e-05 Score=57.97 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
.|..+..++...|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 333344444444555555555544 444444444555556666666666666666653
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.00082 Score=67.12 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChH
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLE 422 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 422 (600)
..+...|++++|+..|+.+++.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 33445566666666666665321 123445555555555666666666555554 2223 3445555555555566666
Q ss_pred HHHHHHHHHhcCCCCCcchHHHH
Q 007530 423 LAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 423 ~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
.|...++++++++|+++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666666666555444333
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00013 Score=53.45 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHhhh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR-RWEEVARARKLIRD 467 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 467 (600)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999987764
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.00098 Score=54.84 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=46.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHH
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASC 415 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 415 (600)
.+...+...|++++|.+.|..+.+..+-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543221111 1223333444455555555555555443 11111 33455555555
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
...|+.+.|...++++++..|+++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 5566666666666666666665543
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0007 Score=62.74 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~ 423 (600)
..+.+++++|+..|..++ .+.| |...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456688888888888876 3455 5666666677888888888887776655 55665 5689999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
|++.|+++++++|++......|-.+--+.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 99999999999999986555555444333
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.001 Score=54.76 Aligned_cols=95 Identities=12% Similarity=-0.058 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLS 446 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 446 (600)
++-.++..+.+.|++++|.+.|+++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 5566778889999999999999887 22333 3467778889999999999999999999988875 45688999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCC
Q 007530 447 NIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 447 ~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.++.+.|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 99999999999999999998764
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00028 Score=50.91 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=49.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++...+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567788999999999999999999999999999999999999999999998886543
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.006 Score=63.73 Aligned_cols=139 Identities=13% Similarity=0.008 Sum_probs=62.2
Q ss_pred CcCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 007530 299 EKNVVLWNTMISGFSR--HA---RSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHI--------GMVEKGKSYFDLMV 364 (600)
Q Consensus 299 ~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 364 (600)
..|..+|...+.+... .+ ...+|+.+|++..+. .|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3567778877776443 22 266888888888874 5663 3333332222110 01112222222211
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.......+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 10011122233444433333344444444444443 2334444444444444444444444444444444444444
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.12 Score=53.55 Aligned_cols=74 Identities=12% Similarity=0.225 Sum_probs=37.4
Q ss_pred HHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
++.+|.+..++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+-- .| ...+..|..+.++.+|
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHH
Confidence 33444444444444444444443 23344556666667777777766654321 11 1234556666666666
Q ss_pred HHHH
Q 007530 256 KQVH 259 (600)
Q Consensus 256 ~~~~ 259 (600)
.++-
T Consensus 898 vela 901 (1189)
T KOG2041|consen 898 VELA 901 (1189)
T ss_pred HHHH
Confidence 5553
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0017 Score=57.29 Aligned_cols=94 Identities=11% Similarity=-0.114 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3445566666777778888888887765 22222 347888888999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHh
Q 007530 447 NIYA-------ANRRWEEVARARKLI 465 (600)
Q Consensus 447 ~~~~-------~~g~~~~a~~~~~~m 465 (600)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 777777666555443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.002 Score=57.20 Aligned_cols=80 Identities=11% Similarity=-0.003 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDA---T-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
.+..+...+.+.|++++|...|++. ...| + ...|..+...+...|+++.|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555556666666655544 1111 1 356777777888888888888888888888888888888888888
Q ss_pred HhcCC
Q 007530 450 AANRR 454 (600)
Q Consensus 450 ~~~g~ 454 (600)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77776
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0062 Score=58.60 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA-CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+..++.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467777888888888889999999887543 2223334333333 333577778999999998765 456668889999
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-...|+++....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999876 22233 35999999999999999999999999999877744
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.0053 Score=52.25 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=75.8
Q ss_pred HHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 007530 380 IDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
..-+-..|++++|..+|+-+ -..-+..-|..|...+...++++.|...+..+..++++||.++...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455789999999988876 1123566788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 007530 458 VARARKLIRD 467 (600)
Q Consensus 458 a~~~~~~m~~ 467 (600)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988876
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.02 Score=51.87 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=119.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL-SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 385 (600)
-++-+....|+.+.|...++++... + |...-...+- --+-..|++++|.++++.++++. +.|..++--=+...-.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHH
Confidence 3444556678888899999888776 3 5433222221 12345689999999999998653 4466777766777777
Q ss_pred cCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---ChHHHHH
Q 007530 386 AGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR---RWEEVAR 460 (600)
Q Consensus 386 ~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~ 460 (600)
.|+.-+|++-+.+. .+..|...|..|...|...|+++.|.-.+++++=+.|.++..+..++..+.-.| +.+-+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88877887776665 456799999999999999999999999999999999999999999999886665 4556677
Q ss_pred HHHHhhhCC
Q 007530 461 ARKLIRDSE 469 (600)
Q Consensus 461 ~~~~m~~~~ 469 (600)
.+.+..+-.
T Consensus 213 yy~~alkl~ 221 (289)
T KOG3060|consen 213 YYERALKLN 221 (289)
T ss_pred HHHHHHHhC
Confidence 776665543
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0012 Score=61.19 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
-+.+.+++++|.+.|.+. .+.| |++.|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356788999999999876 5555 67788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 007530 460 RARKLIRDS 468 (600)
Q Consensus 460 ~~~~~m~~~ 468 (600)
+.|++..+-
T Consensus 170 ~aykKaLel 178 (304)
T KOG0553|consen 170 EAYKKALEL 178 (304)
T ss_pred HHHHhhhcc
Confidence 999877653
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.36 E-value=0.0064 Score=53.91 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=87.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN--EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYS 377 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 377 (600)
....+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445677777778888999999999988876543332 356777777888888889988888888643 33 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
.+...|...|+...+..-++.. ...++.|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777777665554332221 123677888999999988875 4555555555543
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.17 Score=49.42 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 417 (600)
.+.+..+.-|...|....|.++-. ++.+ |+...|...+.+|+..|+|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355556677778888888777754 4454 8899999999999999999999988764 3355788999999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
.|+..+|.....++ .+..-..+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888772 1145678899999999998875443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.0044 Score=61.92 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=79.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcC
Q 007530 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAG 387 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 387 (600)
...+...|++++|+++|++.++.. +-+...|..+..+|...|++++|+..++.+++. .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 455677899999999999998853 235667778888999999999999999999743 34 5677888889999999
Q ss_pred CHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q 007530 388 LIHEAYDLILNM-PFDATASMWGSLLAS 414 (600)
Q Consensus 388 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 414 (600)
++++|...|++. ...|+......++..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999886 445554444444433
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.0011 Score=50.72 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHH
Q 007530 315 HARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 392 (600)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+ ..| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666666422 12333344456666666666666666655 11 112 122222335556666666666
Q ss_pred HHHHHc
Q 007530 393 YDLILN 398 (600)
Q Consensus 393 ~~~~~~ 398 (600)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666543
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.31 E-value=0.075 Score=54.50 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=103.8
Q ss_pred HHHHHHHHhcCCChHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCC
Q 007530 138 VSSVLCACAAKRDVFECK--QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215 (600)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 215 (600)
++..=.+|.+.++..--+ .-++.+.++|-.|+... +...++-.|++.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 333344455444443322 23455666676666553 44556667888888888754 45
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 216 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
.-..|+++|..|.-- -...-+...|..++-+.+...-.+. .-++.--.+...++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 666677766665421 1122233334433333332221111 111111122344555566666655442
Q ss_pred cCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 007530 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 296 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
..+|-.+-++++-+++.. .+..+...+...+-+...+..|-++|..|-.
T Consensus 727 -----------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 233434444444444322 2344555555555666777777888877631
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~ 400 (600)
...++++....+++.+|..+-++.|
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCc
Confidence 2356777778888888888888775
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.29 E-value=0.0022 Score=49.62 Aligned_cols=91 Identities=20% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....+.... +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 4445555666666666666666665542 333344444555555555555555555555544322 2234444444455
Q ss_pred HcCCHHHHHHHHcc
Q 007530 182 KCGLISDASRVFES 195 (600)
Q Consensus 182 ~~g~~~~A~~~f~~ 195 (600)
..|+.++|...|..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 55555555444443
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.0057 Score=52.53 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC---CHHHH
Q 007530 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV-LPNVFHYSCMIDILGRAGLIHEAYDLILNMP-FDA---TASMW 408 (600)
Q Consensus 334 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 408 (600)
.|+...-..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|...++++. ..| .+.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444445555555555555555555431 22 2234444444444444555555555444431 111 11222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
-.+...+...|.+..|+..|+.++.--|. +.........+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 33344444455555555555555554443 2233344444455554444443
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.00082 Score=48.94 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++++++.+|+++..+..++.+|.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888777643
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.24 E-value=0.007 Score=47.59 Aligned_cols=81 Identities=15% Similarity=0.026 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------chHHHHHHHHHHHHhCCCCchhH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLA--------ALIQGKQVHAVLCKTGFGSNMFA 273 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 273 (600)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777788999999999999999999 999999999999887643 34456778888998899999999
Q ss_pred HHHHHHHHHh
Q 007530 274 ASSLVDMYAK 283 (600)
Q Consensus 274 ~~~l~~~y~~ 283 (600)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887765
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.22 E-value=0.0083 Score=50.85 Aligned_cols=95 Identities=14% Similarity=-0.001 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
+......+...+.+.|++++|..+|+.+.... +-+..-|..|..+|-..|++++|...+..+....+. |+..+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 33344444444555666666666666655542 334445555555555566666666666666555532 555555555
Q ss_pred HHHHHcCCHHHHHHHHcc
Q 007530 178 DVYAKCGLISDASRVFES 195 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~ 195 (600)
.+|.+.|+.+.|++.|+.
T Consensus 111 ~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 111 ECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 666666666666655554
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.21 E-value=0.022 Score=50.19 Aligned_cols=110 Identities=13% Similarity=0.036 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN--EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 379 (600)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++...+.. +.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 45667777777788888888888888876532222 2467777778888888888888888876432 1223445555
Q ss_pred HHHHH-------hcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 380 IDILG-------RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 380 i~~~~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
...|. +.|++++|... +++|..++++.++.+|.+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 33333333322 345667777777787753
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.21 E-value=0.0063 Score=61.02 Aligned_cols=119 Identities=12% Similarity=0.103 Sum_probs=82.6
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC----CCHHHH
Q 007530 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA--AMDRNVFVGTALLDVYAKCGLISDASRVFESMPE----RNEVTW 204 (600)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~ 204 (600)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++++.|.+.|..+.+..+++.=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4556667777777777777777777776666554 2222334556777777777777777777766443 677777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 249 (600)
|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777776666777777666666554
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.015 Score=54.52 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=84.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
+-|.+.|-.|...|.+.|+...|..-|.+. .+. +++..+..+..++.. .....++..++++++.++|.+......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 347888999999999999999999988876 233 456666666666544 345788999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
|+..+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988664
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.19 E-value=0.097 Score=49.11 Aligned_cols=57 Identities=12% Similarity=-0.037 Sum_probs=33.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (600)
.+..-|.+.|.+..|..-++.+++.+.-.| ..+....++.+|...|..++|.+....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344556666666666666666666554333 334455566666666766666665543
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.18 E-value=0.0012 Score=48.91 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=50.3
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..+...++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999998887654
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.17 E-value=0.027 Score=54.38 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=10.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 007530 207 MVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m 227 (600)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 344555555666655555544
No 182
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.44 Score=50.14 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 352 (600)
+.+--+.-+..-|+...|.++-.+.+-||-..|-.=+.+++..+++++-+++-+.++ .+..|..+..+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 334445556677889999999999888998888888899999999887666655543 24567778889999999
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 007530 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (600)
.++|.+++-+.. |.. -.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 999999887652 221 467888999999988876544
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0011 Score=47.83 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 379 MIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677788888888888776 3345 467888888888888999999999999988888764
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.0073 Score=58.13 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=90.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA-CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
.+|-.+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 357777777777777888888888887553 2233344433333 23356677788888888887 5557788888888
Q ss_pred HHHHcCCHHHHHHHHccCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 179 VYAKCGLISDASRVFESMPER------NEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
...+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999887652 2357888888888888888888888888764
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.10 E-value=0.013 Score=46.09 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHhcCCCccHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIG--------MVEKGKSYFDLMVKQHNVLPNVF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 374 (600)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+++.|+ ..+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 334456666777999999999999999999 899999999999877633 3456778889987 458999999
Q ss_pred HHHHHHHHHHh
Q 007530 375 HYSCMIDILGR 385 (600)
Q Consensus 375 ~~~~li~~~~~ 385 (600)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.021 Score=55.38 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=113.2
Q ss_pred hHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHhcCCCccHHHHH--
Q 007530 303 VLWNTMI-SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS--ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-- 377 (600)
Q Consensus 303 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 377 (600)
.+|-.+- ..+...|+.++|...--...+.. ++ ..+..+++ ++-..++.+.|...|++.+ .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 4444432 34667788888888776666542 11 12222222 2334678888888888775 4455432211
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHcC-CC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 378 -----------CMIDILGRAGLIHEAYDLILNM-PF-----DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 378 -----------~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
-=..-..+.|++.+|.+.+.+. .+ +|+...|........+.|+.++|+.-.+.+++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 1123456789999999999876 33 445666777777788899999999999999999999888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.|..-++++...++|++|.+-++...+..
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999998876543
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.061 Score=51.97 Aligned_cols=97 Identities=9% Similarity=0.116 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhc-CCCcc--HH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLH-----PNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQH-NVLPN--VF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 374 (600)
.+..+...+.+.|++++|+++|++....... ++.. .|...+-++...||+..|.+.++...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445566677888888888888887664322 1221 22333335556688888888888765322 23222 33
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHcCC
Q 007530 375 HYSCMIDILGR--AGLIHEAYDLILNMP 400 (600)
Q Consensus 375 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 400 (600)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666643 345666766676663
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.07 E-value=0.0063 Score=54.09 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=75.6
Q ss_pred HHHHhcC--CCcCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 007530 291 YFVFSGI--EEKNVVLWNTMISGFSR-----HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI------------- 350 (600)
Q Consensus 291 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 350 (600)
...|+.. ..+|-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 35677777777777764 366777777888899999999999999999876442
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 007530 351 ---GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388 (600)
Q Consensus 351 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 388 (600)
.+.+-|++++++| +.+|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2457789999999 688999999999999999988775
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.098 Score=45.21 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=107.0
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--Cc
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM---PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NA 439 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~ 439 (600)
++..+.|++..--.|...+.+.|+..||...|++. ++.-|....-.+..+....++...|...++++.+..|. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 44466788888888999999999999999999887 45567888888999999999999999999999997774 56
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHH
Q 007530 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKK 506 (600)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~ 506 (600)
.....++..|...|++.+|...|+...+.-..+...+.+.++- .+.++..++-..+.++.+..++
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~L--a~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEML--AKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHH--HHhcchhHHHHHHHHHHHHHHh
Confidence 6778899999999999999999998887543343344443322 2345555555556667766543
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.04 E-value=0.013 Score=58.92 Aligned_cols=120 Identities=10% Similarity=0.024 Sum_probs=76.0
Q ss_pred CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC----cCHhH
Q 007530 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT--GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE----KNVVL 304 (600)
Q Consensus 231 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~ 304 (600)
+.+.+...+..+++.+....+++.+..++...... ....-..+..+++..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455666666666666666666666666666554 2222233445677777777777777776665332 56677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 350 (600)
+|.++..+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666666665544
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0041 Score=59.96 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHH---HHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CC-CCCH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLM---VKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-------PF-DATA 405 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~ 405 (600)
..|..|.+.|.-.|+++.|+..++.- .+++|-.. ....+..+..++.-.|+++.|.+.|+.- +. .-..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666677788999999887653 23445333 3456777888899999999999888753 21 2245
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhc----CC--CCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFG----ME--PDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+..+|...|....+++.|+..+.+=+. ++ -.....+..|+++|...|..+.|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6777899999999999999998877554 22 1235688899999999999999998766554
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.99 E-value=0.027 Score=50.22 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHc-----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHH
Q 007530 233 EYNQFTISSVICACAG-----LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307 (600)
Q Consensus 233 ~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 307 (600)
..|..+|..++..+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -.. .+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n-----------~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRN-----------FFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-ccc-----------HHHH
Confidence 3455555555555543 35566666667777777888888888888877654 2221 011 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 352 (600)
+..- ...+.+-|++++++|...|+.||..|+..+++.+++.+.
T Consensus 111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 124567899999999999999999999999999977553
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.33 Score=45.58 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007530 378 CMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 431 (600)
.+...|.+.|.+..|..-++.+ |..| .......+..++...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455677777776665555544 4333 2445666777777788888777766554
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0011 Score=48.25 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHH
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWG 409 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 409 (600)
..|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|..+++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 4566666666666665432 124445555666666666666666666665 2334433333
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.94 E-value=0.00066 Score=41.32 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=30.2
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 428 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
++++++++|+++..|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999986
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.039 Score=45.00 Aligned_cols=91 Identities=15% Similarity=-0.006 Sum_probs=55.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLGLEYN--QFTISSVICACAGLAALIQGKQVHAVLCKTGFG--SNMFAASSLVDMYA 282 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~y~ 282 (600)
+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++......-. .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888776654 234556667777788888888887777664211 01222222233444
Q ss_pred hhCCHHHHHHHHhcC
Q 007530 283 KCGCVVDAYFVFSGI 297 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~ 297 (600)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555554433
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.72 E-value=0.12 Score=54.25 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34454444444445666666666666652 2356666666666666666666666666554
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.059 Score=44.00 Aligned_cols=90 Identities=19% Similarity=0.083 Sum_probs=51.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHH
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYS--EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR--NVFVGTALLDVYA 181 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~ 181 (600)
..++-..|+.++|+.+|++....| ...+ ...+..+...+...|+.++|..+++......+.+ +..+...+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345556677788888888777776 4433 2345556666677777777777777666553221 1122222333445
Q ss_pred HcCCHHHHHHHHccC
Q 007530 182 KCGLISDASRVFESM 196 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m 196 (600)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666555443
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.15 Score=46.65 Aligned_cols=167 Identities=11% Similarity=-0.013 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCC--CC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPE--RN--------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~--~d--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 242 (600)
+++|...|.-..-+++-...|+.-.. .. ....+.++....-.|.+.-.+.++++..+...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 56666666655555555555554332 12 234567777778888899999999999887666677888888
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHh
Q 007530 243 ICACAGLAALIQGKQVHAVLCKTGFGSNM-----FAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSR 314 (600)
Q Consensus 243 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 314 (600)
.+.-.+.|+.+.|...++...+..-..|. .+.......|.-.+++..|...|+++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999988775433333 3333444456667888888888887775 355566655545555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 315 HARSVEVMILFEKMQQAGLHPNEQTYI 341 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~g~~p~~~t~~ 341 (600)
.|+..+|++.++.|+.. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78889999999999875 45544443
No 200
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.62 E-value=0.85 Score=45.32 Aligned_cols=408 Identities=9% Similarity=0.044 Sum_probs=224.2
Q ss_pred ccCCchhHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcCChHHHHHHHccCCCC-CcchHHHHHHH--HHcCCCh
Q 007530 45 RERAPVRGKVCHAKIIGMGLNND------TLTSNILINFYSKCGLISGARKVFDEMPQR-CIVSWNTIIGS--YTTNGRE 115 (600)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~ 115 (600)
+.++..++..+|.++.+.- ..+ ....+.++++|-. .+++.....+....+. ....|-.+..+ +-+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 6788999999999987653 222 3345677888864 3455444444443321 13345555544 3467889
Q ss_pred hHHHHHHHHHHHc--CCCCC-----------ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC----CCChhHHHHHHH
Q 007530 116 QEAVALFINMLRE--GKTPY-----------SEFTVSSVLCACAAKRDVFECKQLHVFALKAAM----DRNVFVGTALLD 178 (600)
Q Consensus 116 ~~A~~~~~~m~~~--g~~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~ 178 (600)
.+|++.+...... +.-+| |-+.=+..+.++...|.+.+|+.+++++...-+ .=+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999988777665 31111 111223456677789999999999988876643 367888998888
Q ss_pred HHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCC-------------------------------HHHHHHHHHHH
Q 007530 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL-------------------------------YEEALILFRRA 227 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~-------------------------------~~~A~~~~~~m 227 (600)
+++++=-++.-... ...=..-|.-||..|.+.=+ ..--++++..-
T Consensus 176 mlsrSYfLEl~e~~----s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 176 MLSRSYFLELKESM----SSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHhHHHHHHHHHhc----ccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 88776333221111 11111123333333322111 11112222222
Q ss_pred HHcCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhhCCHHHHHHHHhcCC--Cc
Q 007530 228 QVLGLEYNQFT-ISSVICACAGLAALIQGKQVHAVLCKTGFGS----NMFAASSLVDMYAKCGCVVDAYFVFSGIE--EK 300 (600)
Q Consensus 228 ~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~y~~~g~~~~A~~~~~~~~--~~ 300 (600)
.+.-+.|+... ...+...+.+ +.+++..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 22334454322 2223333332 4444444444443332111 23456666777777788777776665443 22
Q ss_pred CHh-------HHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH---HHHHccCC-HHHHHHHHHHHH
Q 007530 301 NVV-------LWNTMISGFS----RHARSVEVMILFEKMQQAGLHPNEQTY-ISVL---SACSHIGM-VEKGKSYFDLMV 364 (600)
Q Consensus 301 ~~~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~~~~~~~~ 364 (600)
+.. +-.++-+..+ ..-+..+-+.+|+......+ |..-. ..++ .-+-+.|. -++|.++++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 211 1111112222 11223345666766665543 32211 1222 22445555 788888888886
Q ss_pred HhcCCCc-cHHHHHHHHH----HHHhc---C---CHHHHHHHHHcCCCCC----CHHHHHHHHHH--HHHcCChHHHHHH
Q 007530 365 KQHNVLP-NVFHYSCMID----ILGRA---G---LIHEAYDLILNMPFDA----TASMWGSLLAS--CRNYRNLELAEIA 427 (600)
Q Consensus 365 ~~~~~~p-~~~~~~~li~----~~~~~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~ 427 (600)
+ +.| |...-|.+.. .|..+ . ++-+-++++++.++.| +...-|.|..| +..+|++.++.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3 233 3333333221 22211 1 2223355566666555 34455556555 4568999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 428 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..-+.++.| .+.+|-.++-......++++|..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 68899999999999999999999997764
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.62 E-value=0.0091 Score=59.40 Aligned_cols=65 Identities=12% Similarity=-0.073 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG---NHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+...|+.+..++...|++++|...++++++++|+++. +|..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666653 3666666666666666666666666553
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.2 Score=51.62 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 217 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
+-+.+.-+++|++.|-.|+..... ..|+-.|.+.+|.++|.+ .|.+ |-.+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 444555567888888888876543 345667888888777643 3322 2245556555556666655543
Q ss_pred CCCcCHhHHHHHHHH---H-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 007530 297 IEEKNVVLWNTMISG---F-SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372 (600)
Q Consensus 297 ~~~~~~~~~~~li~~---~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 372 (600)
-... .-..++.- . ...+++..|-+++ ...|- ..-.+..+...|-.+-+.++-+++- ..+
T Consensus 684 g~~~---eKKmL~RKRA~WAr~~kePkaAAEmL---iSaGe------~~KAi~i~~d~gW~d~lidI~rkld-----~~e 746 (1081)
T KOG1538|consen 684 GDPK---EKKMLIRKRADWARNIKEPKAAAEML---ISAGE------HVKAIEICGDHGWVDMLIDIARKLD-----KAE 746 (1081)
T ss_pred CChH---HHHHHHHHHHHHhhhcCCcHHHHHHh---hcccc------hhhhhhhhhcccHHHHHHHHHhhcc-----hhh
Confidence 3211 10111100 0 0112222222221 11110 0012223444454555555444432 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH------
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS------ 446 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------ 446 (600)
.++...+..-+.+...+.-|-++|.+|+.. .+++......+++++|..+.++.-+..|+ .|.-.+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhh
Confidence 456666666677778888899999998622 34556666789999999999988776665 333333
Q ss_pred -------HHHHhcCChHHHHHHHHHhh
Q 007530 447 -------NIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 447 -------~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+|.++|+-.||.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 34555555555555555553
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.60 E-value=0.0046 Score=45.07 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHhcCCC
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYR-NLELAEIAAKQLFGMEP 436 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 436 (600)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666666666777777777766655 2234 4567777777777887 68888888888887776
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.57 E-value=0.019 Score=54.38 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHH
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSN 447 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 447 (600)
|...+..+.+.|++++|...|+.+ ...|+ ...+.-+..++...|+++.|...|+++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333333445555555444443 11122 1234445555556666666666666666555543 333444455
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 007530 448 IYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~~~m~~ 467 (600)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.55 E-value=0.85 Score=44.40 Aligned_cols=209 Identities=15% Similarity=0.081 Sum_probs=124.5
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CcCHh--HHHHHHHHHH---hcCC
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-----EKNVV--LWNTMISGFS---RHAR 317 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~ 317 (600)
+.|..+.|.+.-...-..- +.-.-.+.+++...+..|+++.|+++.+.-. ++++. .--.|+.+-+ -.-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3444444444444433321 1123344455555556666666666555332 23321 1222222211 1234
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (600)
...|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+-+. .|....+... .+.+.|+. +.+-+
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRl 315 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRL 315 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHH
Confidence 5556555555444 5677543 234456789999999999999999743 4555454332 34455643 22222
Q ss_pred HcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhh
Q 007530 397 LNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN-RRWEEVARARKLIRD 467 (600)
Q Consensus 397 ~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 467 (600)
++. ..+| +..+..++..+-...|++..|..-.+.+....|.. +.|..|.++-... |+-.++....-+..+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 221 2334 46777788888889999999999999999999984 6888999887655 999998888766554
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.26 Score=45.17 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC----CCccHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN----VLPNVFHYSC 378 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~ 378 (600)
..-+.++..+.-.|.+.-.+.++.+.++..-+-+......+.+.-.+.||.+.|..+|+...+..+ +.-...+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 344566666667777888888888888765455666777777777788888888888887654322 1111112222
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 379 MIDILGRAGLIHEAYDLILNMPFD--ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
....|.-.+++.+|...+.+.+.. .|+...|.=.-...-.|+...|.+..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 222334445555666666555321 12333333222223345556666666666655554
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.54 E-value=0.6 Score=42.50 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=87.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVLGLE--YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
-.....+.+.|++++|++.|+++...-.. --....-.+..++-+.|+++.|...++..++.--.....-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 33444555666777777777666654211 1122334455566666666666666666665421111111111111111
Q ss_pred hhCCHHHHHHHHhcCCCc-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 007530 283 KCGCVVDAYFVFSGIEEK-------NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 355 (600)
......... ...+ -...+..+|.-|-......+|...+..+... -- ..-..+..-|.+.|.+..
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHH
Confidence 111111100 1111 1234555566666666666666655555432 00 111235566788888888
Q ss_pred HHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHH
Q 007530 356 GKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAY 393 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 393 (600)
|..-++.+++.+.-.+. ......|+.+|.+.|..+.|.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888888877644332 244566777777777776443
No 208
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.49 E-value=0.26 Score=40.07 Aligned_cols=140 Identities=12% Similarity=0.016 Sum_probs=87.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
.-.|..++..++..+.... .+..-++.++--....-+-+...+.++.+-+-+.+.|-. ....++..|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc----
Confidence 3457778888888887764 255566666665555666677777777775544443311 12233444444442
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 393 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
+......-+......|+-+.-.+++..+.+.+..+|....-++++|.+.|...++.+++++.-++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556677888899999999999988755566889999999999999999999999999999874
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.47 E-value=0.3 Score=48.25 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCCc---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 277 LVDMYAKCGCVVDAYFVFSGIEEK---N----VVLWNTMISGFSR---HARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 277 l~~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
|+-.|....+++...++.+.+... + ...--...-++.+ .|+.++|++++..+....-.++..||..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444577777777777777776642 1 1111122334455 78888999998886666667777788777666
Q ss_pred HHc---------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH----HHHHHH---Hc-C----CCCCCH
Q 007530 347 CSH---------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH----EAYDLI---LN-M----PFDATA 405 (600)
Q Consensus 347 ~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m----~~~p~~ 405 (600)
|-. ....++|+..|.+. +.+.|+..+--.++..+.-.|... +..++- .. . ...+..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 532 22456677766644 344565443333333344444321 222221 00 0 112222
Q ss_pred H--HHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 406 S--MWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 406 ~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
. .+.+++.++.-.|+.+.|.+.+++++.+.|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2 3356677777777777777777777776654
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.46 E-value=0.0046 Score=40.34 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999888777654
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.19 E-value=0.15 Score=48.30 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=50.3
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCCh
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNL 421 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~ 421 (600)
.+.|++++|...|+.+++.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555554432111 0123334555555555555555555544 2111 133444455566677888
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 007530 422 ELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~ 439 (600)
+.|...++++++..|+..
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 888888888888888754
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.15 E-value=1.5 Score=42.87 Aligned_cols=301 Identities=13% Similarity=0.047 Sum_probs=175.0
Q ss_pred ChHHHHHHHccCCCCCcchHHHHHHHHHc--CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh--cCCChHHHHHHH
Q 007530 83 LISGARKVFDEMPQRCIVSWNTIIGSYTT--NGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRDVFECKQLH 158 (600)
Q Consensus 83 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~ 158 (600)
....+.+.|..-+ --..|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|
T Consensus 68 sP~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 68 SPYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred CcHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 3444555555432 22356666666554 46777787777665544 6667777777777644 469999999999
Q ss_pred HHHHHhCCCCChhH--HHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Q 007530 159 VFALKAAMDRNVFV--GTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLG-L 232 (600)
Q Consensus 159 ~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 232 (600)
+.|... |.... ...|.-.--+.|+.+.|+..-+.... | =.-.|.+.+...+..|+|+.|+++.+.-+... +
T Consensus 144 eAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 144 EAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 998763 11111 12233333466888887776655443 2 23467888999999999999999998776543 4
Q ss_pred CCCHHH--HHHHHHHHHc---cCchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhhCCHHHHHHHHhcCCC--cCHhH
Q 007530 233 EYNQFT--ISSVICACAG---LAALIQGKQVHAVLCKTGFGSNMFAA-SSLVDMYAKCGCVVDAYFVFSGIEE--KNVVL 304 (600)
Q Consensus 233 ~p~~~t--~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~ 304 (600)
.++..- -..++.+-+. ..+...|+..-.+..+. .||..-. -.-...|.+.|++.++-.+++.+-+ |....
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 455432 2233333221 12344555555444443 3332221 1224567778888888877777653 34433
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQA-GLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 382 (600)
|... .+.+.|+ .++.-+++..+. .++|| ......+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 299 a~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 299 ALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred HHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 3322 2233443 344444443321 24554 3455566666777777777776665553 446777777777665
Q ss_pred HHh-cCCHHHHHHHHHcC
Q 007530 383 LGR-AGLIHEAYDLILNM 399 (600)
Q Consensus 383 ~~~-~g~~~~A~~~~~~m 399 (600)
-.- .|+-.++..++-+.
T Consensus 372 eeAetGDqg~vR~wlAqa 389 (531)
T COG3898 372 EEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhhccCchHHHHHHHHHH
Confidence 543 37777777776655
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.13 E-value=0.02 Score=42.23 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 381 DILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|...++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4567788888888888776 3334 466777788888888999999999999999988876543
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.089 Score=51.35 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..++..|...+.+.+++..|++...+.++++|+|......-+.+|...|.++.|+..|+.+.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34667788888899999999999999999999999999999999999999999999999998654
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.05 E-value=0.07 Score=51.78 Aligned_cols=254 Identities=13% Similarity=0.034 Sum_probs=149.2
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHH--Hh--CCC-CChhHHHHHHHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEF----TVSSVLCACAAKRDVFECKQLHVFAL--KA--AMD-RNVFVGTALLDV 179 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 179 (600)
+++.|+....+.+|+..++.| .. |.. +|..+.++|.-.+++++|.++|..=+ .. |-. -.......|.+.
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-Te-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-ch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 677888888888888888876 32 333 45556667777778888887765422 11 100 011222334445
Q ss_pred HHHcCCHHHHHHHHccCC-------CC--CHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHH-
Q 007530 180 YAKCGLISDASRVFESMP-------ER--NEVTWSSMVAGFVQNEL--------------------YEEALILFRRAQV- 229 (600)
Q Consensus 180 y~~~g~~~~A~~~f~~m~-------~~--d~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 229 (600)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.++|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555566666654422111 10 12344455555554443 2334444443221
Q ss_pred ---cCCC-CCHHHHHHHHHHHHccCchHHHHHHHHHHHH----hCC-CCchhHHHHHHHHHHhhCCHHHHHHHHhcCC--
Q 007530 230 ---LGLE-YNQFTISSVICACAGLAALIQGKQVHAVLCK----TGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-- 298 (600)
Q Consensus 230 ---~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~-- 298 (600)
.|-. .-...|..+.+.|.-+|+++.+...|+.-+. .|- ......+..|.+.|.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 0112344455555567789999888876544 221 1234466778888888899999988876432
Q ss_pred -----CcC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 299 -----EKN--VVLWNTMISGFSRHARSVEVMILFEKMQQA----G-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 299 -----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
++. ..+..+|...|.-..++++|+.++.+-..- + ..-....+.+|..++...|..++|..+...-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 233 345566777888788889999888764321 1 12245677888899999999999887776554
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.01 E-value=0.019 Score=49.28 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455677778889999999999999999999999999999999999999999999998875
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.99 E-value=0.26 Score=44.92 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=81.2
Q ss_pred HHHHHcCCHHHHHHHHccCCC--C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 007530 178 DVYAKCGLISDASRVFESMPE--R----NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL-- 249 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~--~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-- 249 (600)
..+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...|++....-..-....+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344555666666666665543 1 12234455666666777777777777666542111112222222222111
Q ss_pred -----------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCCh
Q 007530 250 -----------AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318 (600)
Q Consensus 250 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 318 (600)
+....|...+.. ++.-|=...-..+|......+.+.=...--.+..-|.+.|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred CccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 112233333333 344444444445554444433322111222245668889999
Q ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHH
Q 007530 319 VEVMILFEKMQQAGLHPN----EQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~ 357 (600)
..|..-++.+.+. =|+ ......++.++.+.|..+.+.
T Consensus 158 ~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999998886 233 235567778888888777543
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.98 E-value=0.11 Score=42.83 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 333 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
..|+..+..+++.+|+..+++..|.++.+...+.++++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666665555555555554
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.89 E-value=0.081 Score=43.65 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH--------------HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMV--------------KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--- 399 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 399 (600)
..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|.++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555544321 23345677777777888887778888777776654
Q ss_pred -CCCCCHHHHHHHHHHHHHc
Q 007530 400 -PFDATASMWGSLLASCRNY 418 (600)
Q Consensus 400 -~~~p~~~~~~~ll~~~~~~ 418 (600)
+++-+..+|..|+.-+...
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 5555577777777655443
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=2 Score=42.24 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=45.0
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcC
Q 007530 312 FSRHARSVEVMILFEKMQQA---GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAG 387 (600)
Q Consensus 312 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 387 (600)
..+.|.+.+|.+.+.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.|. +..|-.-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 45567777777777766552 234445555555556666777777766665554 22222 111111122333445
Q ss_pred CHHHHHHHHHcC
Q 007530 388 LIHEAYDLILNM 399 (600)
Q Consensus 388 ~~~~A~~~~~~m 399 (600)
.|++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.14 Score=48.05 Aligned_cols=99 Identities=15% Similarity=-0.014 Sum_probs=66.2
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC---CHHHHHHHHccCCC---CCHHHH
Q 007530 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG---LISDASRVFESMPE---RNEVTW 204 (600)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~---~d~~~~ 204 (600)
-|-|...|-.|..+|...|+.+.|..-|....+... ++...+..+..++.... ...++..+|+++.. .|+.+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 356777777777777777777777777777777632 24555555555443332 24567777777664 255666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
..+...+.+.|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 67777788888888888888888775
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.49 E-value=0.13 Score=47.55 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=82.3
Q ss_pred HHHHHHHhcCC--CcCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------
Q 007530 288 VDAYFVFSGIE--EKNVVLWNTMISGFSRH-----ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG--------- 351 (600)
Q Consensus 288 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 351 (600)
-..++.|.... ++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..||+.+=+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33456677766 67888999999888754 566667778899999999999999999998875532
Q ss_pred -------CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 007530 352 -------MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390 (600)
Q Consensus 352 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 390 (600)
.-+=++.++++| +.+|+.||.++-..|+.++++.+..-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 224478999999 68999999999999999999988643
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.47 E-value=0.021 Score=42.79 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhc----CCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFG----MEPD---NAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+++.+...+...|++++|+..++++++ ..++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555556666666666655554 2221 23456677777777777777777776653
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.34 E-value=0.031 Score=41.81 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
.++..+...+...|++++|++.++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555556666666666666655543
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.30 E-value=2.2 Score=43.28 Aligned_cols=52 Identities=8% Similarity=0.064 Sum_probs=26.0
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
-+..+.+.-+++-++..+ +.||-.+.-.++ +--......++++++.+.++.|
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH
Confidence 344455555555454443 345443322222 2223445677777777777654
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.23 E-value=0.92 Score=45.84 Aligned_cols=187 Identities=12% Similarity=0.072 Sum_probs=99.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 393 (600)
+..++..-+++-++..+ +.||-.+-..++ +--....+.++++++++..+... ..+..-- .....|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~~lg~s~-~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----ASLGKSQ-FLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----Hhhchhh-hhhcccc---hh
Confidence 34455555566666555 456654433333 23344567788888877654210 0000000 0000111 11
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 394 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
+.+..-...|-..+=..|...+.+.|+.++|.+.++++++..|. +...+..|+.++...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222333355667777788888888888888876553 4557778888888888888888888776554444
Q ss_pred cCCceEEE--EEcCc-----------ccCcchHHHHHHHHHHHHHHHHCCCccC
Q 007530 472 KEKSKSWV--EIKGK-----------RNHPRIAEIYSKLEKLVEEMKKLGYKPE 512 (600)
Q Consensus 472 ~~~~~~~~--~i~~~-----------~~~~~~~~~~~~l~~l~~~m~~~g~~pd 512 (600)
+...++|. +++.. .+.|........++.+-+.++....+|+
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 44444442 12211 1112222233445567777777888876
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.35 Score=47.37 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+..|.-+|.+.+.+.+|+...++. . .++|....-.=..++...|+++.|+..|+++++++|+|-.+..-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5566777888899999998887765 2 2456777777788999999999999999999999999988888887777666
Q ss_pred CChHHH-HHHHHHhhh
Q 007530 453 RRWEEV-ARARKLIRD 467 (600)
Q Consensus 453 g~~~~a-~~~~~~m~~ 467 (600)
..+.+. .++|..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 655554 667777754
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.18 Score=46.75 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD---NAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
|+..-| |..++...|+++.|..+|..+.+-.|+ -|..+.-|+....+.|+.++|..+++...++
T Consensus 178 ~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 178 PNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred chhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444444 556666666666666666666664443 3445666666667777777777777666543
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.96 E-value=5.4 Score=41.42 Aligned_cols=380 Identities=12% Similarity=0.030 Sum_probs=225.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 007530 67 DTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIV-SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143 (600)
Q Consensus 67 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~ 143 (600)
+...++.||.---.....+.++.+++.+.. |... -|-....-=.+-|..+.+.++|++-+.. +|-....|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 444566666544444555667777776653 4443 3555555556778899999999998886 7777777777666
Q ss_pred HHh-cCCChHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHH---hC---
Q 007530 144 ACA-AKRDVFECKQLHVFALKA-AMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV---QN--- 214 (600)
Q Consensus 144 ~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~---~~--- 214 (600)
.+. ..|+.+..+..|+.++.. |.. .....|-..|..-..++++.....+++++.+-....++..-.-|. ++
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 554 467888888888888776 322 134467777777788889999999998887643333333332222 22
Q ss_pred ---CCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH------------------HH-------HccCchHHHHHHHHHH
Q 007530 215 ---ELYEEALILFRRAQVL----GLEYNQFTISSVIC------------------AC-------AGLAALIQGKQVHAVL 262 (600)
Q Consensus 215 ---g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~------------------a~-------~~~g~~~~a~~~~~~~ 262 (600)
...+++.++-...... -..+.......-+. .+ -..-.....+..++.-
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 1233333332222110 00011111111111 00 0111111122222222
Q ss_pred HHhC---C----CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007530 263 CKTG---F----GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332 (600)
Q Consensus 263 ~~~~---~----~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 332 (600)
++.. + .++..+|..-++.-.+.|+.+.+.-+|++..-| -...|--.+.-.-..|+.+-|..++....+--
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 2211 1 224667888888888888988888888887654 23456666655556688887777776655543
Q ss_pred CC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHcC-CCCCCH
Q 007530 333 LH--PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAY---DLILNM-PFDATA 405 (600)
Q Consensus 333 ~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~ 405 (600)
++ |....+.+. -+-..|+.+.|..+++.+.++. |+. ..-..-+....+.|..+.+. +++... +.+-+.
T Consensus 362 ~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 362 VKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred CCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 32 222223222 3456789999999999997653 543 23333455667888888887 555443 222233
Q ss_pred HHHHHHHH-----HHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 406 SMWGSLLA-----SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 406 ~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
.+...+.- -+...++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 22222222 2344688999999999999999999888888888776655
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.91 E-value=2.9 Score=38.10 Aligned_cols=196 Identities=15% Similarity=0.053 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
..........+...+.+..+...+.... ......+......+...+...++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444445555555555555555554432 22334455555555566666667777766665432221 11111222
Q ss_pred -HHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC--HHHHHHHHHHHHHcC
Q 007530 346 -ACSHIGMVEKGKSYFDLMVKQHNV--LPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT--ASMWGSLLASCRNYR 419 (600)
Q Consensus 346 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~ 419 (600)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776642 111 112233333334455667777777776665 22232 566666777777777
Q ss_pred ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+.+.+...+....+..|.....+..+...+...+.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888888877777764455556666666666677777776666543
No 231
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.90 E-value=7.1 Score=42.51 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=66.9
Q ss_pred cCChHHHHHHHccCCC--CCcchHHHHHHHH--HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 007530 81 CGLISGARKVFDEMPQ--RCIVSWNTIIGSY--TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156 (600)
Q Consensus 81 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (600)
.+++..|.+..+...+ || ..|..++.++ .+.|+.++|..+++.....+ +.|..|...+-..|...+..+++..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 4556666665555443 22 2334444443 45666677776666655443 2256666666666666677777776
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHcCCHH----HHHHHHccCCCCCHHHHHH
Q 007530 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLIS----DASRVFESMPERNEVTWSS 206 (600)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~m~~~d~~~~~~ 206 (600)
+++++.+.. |+......+..+|.+.+++. .|.++++..+++--.-|+.
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 666666542 33555555556666665543 3555666555544444443
No 232
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=6.7 Score=42.01 Aligned_cols=166 Identities=10% Similarity=0.096 Sum_probs=89.1
Q ss_pred HHHhccCCchhHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhH
Q 007530 41 QSCARERAPVRGKVCHAKIIGMGLNN---DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117 (600)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 117 (600)
..+...+.+++|..+-.... |..| -..++..+|..|.-.|++++|-...-.|...+..-|--.+..++..++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 33444455555554433322 3333 345677788888888888888888888888888888888888888777665
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 118 A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
...+ +.... -..+...|..++..+.. .....+++...+. +++.+.-...+++ ...-+++-.
T Consensus 442 Ia~~---lPt~~-~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa---------~~~q~~q~S 502 (846)
T KOG2066|consen 442 IAPY---LPTGP-PRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISA---------TEPQIKQNS 502 (846)
T ss_pred hhcc---CCCCC-cccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhh---------cchHHHhhc
Confidence 4433 22111 12345567777766655 1222223222221 2222222222111 111111111
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 198 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
++ ...-..|+..|...+++..|+.++-..+
T Consensus 503 e~-~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 503 ES-TALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred cc-hhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11 1222237777778888888887776654
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.78 E-value=1.4 Score=45.28 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=92.5
Q ss_pred HHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH
Q 007530 211 FVQNELYEEALILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 289 (600)
..-.++++++.++.+ .-.-..++ ..-...++.-+.+.|..+.|.++-. |+ ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHH
Confidence 344566666655554 11111122 3335566666666777777766632 22 123456778889998
Q ss_pred HHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 007530 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369 (600)
Q Consensus 290 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 369 (600)
|.++-++.. +...|..|.....++|+.+-|.+.|.+... |..|+-.|.-.|+.+.-.++-+... ..|
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~-~~~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE-ERG- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH-HTT-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH-Hcc-
Confidence 888877765 566899999999999999999888887532 4455556677788777777766653 223
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (600)
-++....++.-.|+.++..+++.+-+
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 24444555556677777777777654
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.76 E-value=2.4 Score=43.57 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=92.6
Q ss_pred HHHcCCChhHHHHHHH--HHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 108 SYTTNGREQEAVALFI--NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~--~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...-.|+++++.++.+ ++... +| ..-...++..+-+.|..+.|.++-. |+. .-.+...++|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~--i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPN--IP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhccc--CC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 3344677777666654 22211 33 3346677777777787777776632 332 23455678899
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 186 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
++.|.++-++.. +...|..|.....++|+++-|.+.|.+..+ +..++-.|...|+.+.-.++.......
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988877665 567899999999999999999988887653 455666677778877777777776666
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
|- +|.....+.-.|++++..+++.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 52 3334444455566665555544
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.73 E-value=6.3 Score=41.09 Aligned_cols=156 Identities=13% Similarity=0.053 Sum_probs=73.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-----hHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHH-H
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEF-----TVSSVLCACAA----KRDVFECKQLHVFALKAAMDRNVFVG-T 174 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-----t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~-~ 174 (600)
+++...=.|+-+.+++++.+-.+.+.+.-... +|..++..+.. ..+.+.+.+++..+.+.- |+...| -
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 34444445666666666665544332221111 22222222222 345556666666666652 222222 2
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 007530 175 ALLDVYAKCGLISDASRVFESMPER-------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC- 246 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~~-------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~- 246 (600)
.-...+...|++++|.+.|+..... ....+--+.-.+.-..+|++|.+.|.++.+.. ..+..+|.-+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 2334555666677777766654321 12223333444555666777777666666542 23344444333333
Q ss_pred HccCch-------HHHHHHHHHHH
Q 007530 247 AGLAAL-------IQGKQVHAVLC 263 (600)
Q Consensus 247 ~~~g~~-------~~a~~~~~~~~ 263 (600)
...|+. ++|..++..+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 334444 55555555443
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.69 E-value=0.18 Score=43.09 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=51.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH-----hCCCCChhHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK-----AAMDRNVFVG 173 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 173 (600)
....++..+...|++++|+.+.+.+... -|.|...+..++.++...|+...|.++|+.+.+ .|++|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556677778889999999999998887 477888999999999999999999988887754 4777776553
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.59 E-value=7.2 Score=41.17 Aligned_cols=231 Identities=14% Similarity=0.087 Sum_probs=111.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC-CCcc------------hHHHHHHHHHcCCChhHHHHHHHHHHHcCCC
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ-RCIV------------SWNTIIGSYTTNGREQEAVALFINMLREGKT 131 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 131 (600)
.|.+..|..|...-.+.-.++.|...|-+... +.+. .-.+=|.+| -|++++|.++|-+|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 57777887777766666677777777765542 1111 111222332 266677766666554432
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCC----hhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHH
Q 007530 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM-DRN----VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206 (600)
Q Consensus 132 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~ 206 (600)
..+....+.||+-...+++ +.|- ..| ...++.+...++....+++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~----r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLI----RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHH----HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----Hh
Confidence 1233334444444443332 1211 111 124555555555555555555555443211 11
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
.+.++.+..++++-..+-+ .++-|...+-.+...+...|.-++|.+.|-.- +.+ .+.++.+...++
T Consensus 828 ~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHH
Confidence 2233333333333222222 13334445556666677777777666654322 211 124455666667
Q ss_pred HHHHHHHHhcCCCcCHhHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEEKNVVLWNT--------------MISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
+.+|.++-++..-|.+.+.-+ -|.-+.+.|+.-+|-+++.+|.+
T Consensus 894 W~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 777777766655444333211 12334445555555566655543
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.55 E-value=4.1 Score=40.44 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCCC---C----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 175 ALLDVYAKCGLISDASRVFESMPER---N----EVTWSSMVAGFVQ---NELYEEALILFRRAQVLGLEYNQFTISSVIC 244 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~~---d----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 244 (600)
.++-.|-...+++..+++++.+... + ...-.....++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455688888999999998888763 1 1222233445566 8899999999998766666778888877765
Q ss_pred HH
Q 007530 245 AC 246 (600)
Q Consensus 245 a~ 246 (600)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.43 E-value=6 Score=39.55 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc---chHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 007530 54 VCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI---VSWNTIIGSYTTNGREQEAVALFINMLREGK 130 (600)
Q Consensus 54 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 130 (600)
++-+++... +.|..+|-.||.-|...+..++.++++++|..|-. .+|..-|++-....+++....+|.+-+...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 455555432 66889999999999999999999999999998754 579999988888889999999998888764
Q ss_pred CCCChhhHHHHHHHHhcCC
Q 007530 131 TPYSEFTVSSVLCACAAKR 149 (600)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~ 149 (600)
+ +...|..-+.--.+..
T Consensus 107 l--~ldLW~lYl~YIRr~n 123 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVN 123 (660)
T ss_pred c--cHhHHHHHHHHHHhhC
Confidence 4 3445555555444443
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.37 E-value=2.5 Score=35.64 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHH
Q 007530 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219 (600)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 219 (600)
.++..+...+.......+++.+++.+. .+...+|.++..|++.+. ++....++. ..+.......+..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 444444444555555555555555542 355566666666665432 233333331 1122223334444445555555
Q ss_pred HHHHHHHH
Q 007530 220 ALILFRRA 227 (600)
Q Consensus 220 A~~~~~~m 227 (600)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55554443
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.33 E-value=2.4 Score=35.81 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCh
Q 007530 36 LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115 (600)
Q Consensus 36 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 115 (600)
...++..+...+.+......++.+++.+ ..++..+|.++..|++.+ ..+....++. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 4456777777777888888888888776 467788899999998763 3445555552 23445555577777777777
Q ss_pred hHHHHHHHHH
Q 007530 116 QEAVALFINM 125 (600)
Q Consensus 116 ~~A~~~~~~m 125 (600)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 7777776654
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.30 E-value=1 Score=37.73 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=39.7
Q ss_pred HhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 384 GRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 384 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.+.|++++|.+.|+.+ |..| ....-..|+.++...++++.|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3566677776666665 3222 2344556778888888888888888888888887654
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=4.3 Score=37.15 Aligned_cols=87 Identities=14% Similarity=0.081 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCC-------CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHhc----CCCCCcchH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNMP-------FDATA-SMWGSLLASCRNYRNLELAEIAAKQLFG----MEPDNAGNH 442 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~ 442 (600)
.|......|.+..++++|-..|.+-. .-|+. ..+.+.+-.+.-..|+..|++.++.--+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444455666666666655554431 11221 2334444445555677777777777554 445666666
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 007530 443 LLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 443 ~~l~~~~~~~g~~~~a~~~~ 462 (600)
..|+.+| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6777666 456777766654
No 244
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=9.2 Score=40.86 Aligned_cols=325 Identities=10% Similarity=0.024 Sum_probs=178.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHH
Q 007530 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AM-DRNVFVGTALLDVY 180 (600)
Q Consensus 103 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y 180 (600)
..+|+-+...+.+..|+++-+.|...- .. +...|.....-..+..+.. -..+++.+.+. +. -..-..|..+..--
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~-~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPE-SQ-GDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcc-cc-ccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 456677777777888887766664332 12 2445555555554442211 11222222221 11 12344566677777
Q ss_pred HHcCCHHHHHHHHccCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 181 AKCGLISDASRVFESMPER--------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
-.+|+.+-|.++.+.=+.. +..-+..-+.-..+.|+.+-...++..|.+. .+...|... ..+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhc
Confidence 7788888888887654331 2223445555566677777766666666542 111111111 1223
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh--cC-----CCcCHhHHHHHHHHHHhcCC---hHHH-
Q 007530 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS--GI-----EEKNVVLWNTMISGFSRHAR---SVEV- 321 (600)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~g~---~~~A- 321 (600)
..|..+|.+..+..-.. .|-+.|-...+.. +...|. .. .+.-..........+++... ..+|
T Consensus 589 p~a~~lY~~~~r~~~~~------~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRA------TLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhhHHHHHHHHhhchh------hhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 34445555544421110 1222222222222 221111 10 01111112222333433322 1111
Q ss_pred ------HHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 322 ------MILFEKMQQ-AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 322 ------~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
+.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+.. .||-..|-.-+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 222222222 1333344455556667778899999998876652 5888888888999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 395 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
+-+.+. .+.-|.-+..+|.+.|+.++|.+.+.+.-.+ .-...+|.+.|++.+|.+.-
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 988874 2556777889999999999999887664221 25778899999999998764
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.17 E-value=0.49 Score=38.41 Aligned_cols=88 Identities=14% Similarity=0.045 Sum_probs=65.0
Q ss_pred HHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCCh
Q 007530 382 ILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN----AGNHLLLSNIYAANRRW 455 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 455 (600)
++...|++++|++.|.+. .+- .....||.-..+++-.|+.++|..-+++++++.-+. ...|+.-+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888877665 222 356788888888888888888888888888854321 22566677788888999
Q ss_pred HHHHHHHHHhhhCC
Q 007530 456 EEVARARKLIRDSE 469 (600)
Q Consensus 456 ~~a~~~~~~m~~~~ 469 (600)
+.|+.-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99988888877766
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.78 E-value=0.093 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777888888888888888888887775
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=93.74 E-value=5.5 Score=40.34 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=82.8
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 007530 303 VLW--NTMISGFSRH-----ARSVEVMILFEKMQQ-AGLHPNEQ-TYISVLSACSH---------IGMVEKGKSYFDLMV 364 (600)
Q Consensus 303 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 364 (600)
..| ..++.|.... ...+.|+.+|.+... ....|+.. .|..+..++.. ..+..+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 124577888888772 22566532 33333222211 223445555555554
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
+-. .-|......+..++.-.|+++.|..+|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|.....-
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 221 224555555555556666677777777765 34454 45565555566667777777777777777777643322
Q ss_pred H--HHHHHHHhcCChHHHHHH
Q 007530 443 L--LLSNIYAANRRWEEVARA 461 (600)
Q Consensus 443 ~--~l~~~~~~~g~~~~a~~~ 461 (600)
. ..+++|...+ .++|.++
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHH
Confidence 2 2333444433 4444444
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.64 E-value=11 Score=42.44 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 184 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
+++++|..-+..+. ...|.-.++---++|.+.+|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 44555555554443 223333333334556666665554 5677666666655532 111
Q ss_pred HhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HH
Q 007530 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT--YI 341 (600)
Q Consensus 264 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~ 341 (600)
+. ..|+-..-+|.++|+.++|.+.+ ...|++.+|+.+-.+|.. .-|... -.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 11 11222334566777777765443 345666677666666532 112221 13
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.|..-+...++.-+|-++..+... .|. -.+..|++...+++|..+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 455555666666666666554432 232 1234555666666666665544
No 249
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.55 E-value=0.5 Score=47.41 Aligned_cols=62 Identities=6% Similarity=-0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA----SMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555555555555555542 334442 23556666666666666666666666654
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=2.8 Score=39.53 Aligned_cols=121 Identities=11% Similarity=0.061 Sum_probs=83.8
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH---HHHHHHHcCChH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS---LLASCRNYRNLE 422 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~~~~~ 422 (600)
.....|+..++...|+....... -+...--.|+.+|...|+.+.|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44567888888888888865432 2345666788889999999999999999875544444443 222333333333
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 423 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+...+ +.-...+|+|...-..|+..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33222 23344689998999999999999999999999877766554
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=93.53 E-value=0.59 Score=40.08 Aligned_cols=80 Identities=11% Similarity=-0.081 Sum_probs=31.4
Q ss_pred cCChHHHHHHHccCC--C-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 007530 81 CGLISGARKVFDEMP--Q-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157 (600)
Q Consensus 81 ~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (600)
.|++++|..+|.-+. . -|..-|..|..++-..+++++|+..|......+ +-|+..+-....++...|+.+.|+..
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 344444444444321 1 123333444444444444444444444433322 12333333333344444444444444
Q ss_pred HHHHH
Q 007530 158 HVFAL 162 (600)
Q Consensus 158 ~~~~~ 162 (600)
|..++
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44333
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.47 E-value=0.16 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777777777777777777754
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.32 E-value=3.1 Score=34.89 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=55.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHP---NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 387 (600)
...+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...++..++.+.-.|++ .|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 344566666666666666554 111 22344456666666666666666666666554444442 2333333333222
Q ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 388 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
..+..+.-+- ....| .+....|...|+++++.-|++.
T Consensus 97 ~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2221111111 11111 1234567777777777777753
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.09 E-value=0.92 Score=42.14 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHccCC--CCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 007530 189 ASRVFESMP--ERNEVTWSSMVAGFVQN-----ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA----------- 250 (600)
Q Consensus 189 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 250 (600)
.++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 57888888888777653 566777777888999999999999999988764432
Q ss_pred -----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 251 -----ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 251 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
+-+-+..++++|...|+-||-.+-..|++.+++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223466777888888888888777777777776654
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=93.03 E-value=2.3 Score=42.94 Aligned_cols=117 Identities=10% Similarity=0.000 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhc---------CCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcC
Q 007530 352 MVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRA---------GLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYR 419 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~ 419 (600)
..+.|..+|.+.+....+.|+ ...|..+...+... ....+|.++.++. ... .|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788889988755566775 44555544443321 2344556666554 333 46777777777777888
Q ss_pred ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+++.|...|+++..++|+.+..+...+....-+|+.++|.+..++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998875443
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.02 E-value=6.8 Score=35.54 Aligned_cols=192 Identities=14% Similarity=0.068 Sum_probs=113.6
Q ss_pred HHHHHHccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC-HhHHHHHHH-HHHhcC
Q 007530 242 VICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KN-VVLWNTMIS-GFSRHA 316 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g 316 (600)
....+...+.+..+...+...... ........+..+...+...+....+.+.+..... ++ ...+..... .+...|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC
Confidence 333333444444444433333331 2223333444444444555555555555554432 11 122222222 677788
Q ss_pred ChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 007530 317 RSVEVMILFEKMQQAGLHP----NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 391 (600)
+.+.|...+.+... ..| ....+......+...++.+.+...+....+.. .. ....+..+...+...+.++.
T Consensus 145 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 145 DYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred CHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccHHH
Confidence 88888888888755 233 23344444444667788888888888886432 22 35677777888888888888
Q ss_pred HHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 392 AYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 392 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888776 33444 455555555555667799999999999988886
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.00 E-value=2.2 Score=41.29 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=28.6
Q ss_pred HHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCchHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQVL--GLEYNQFTISSVICACAGLAALIQGKQV 258 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 258 (600)
+.+..+.++|+..+.+-... ....--.+|..+..+.+..|.++++...
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 44567788888877766542 1111234566666677777766665544
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.98 E-value=9 Score=36.83 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=9.5
Q ss_pred cCCChHHHHHHHHHHHH
Q 007530 147 AKRDVFECKQLHVFALK 163 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~ 163 (600)
+.|+++.|...+.++..
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 45566666665555544
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.95 E-value=11 Score=37.63 Aligned_cols=150 Identities=7% Similarity=-0.061 Sum_probs=77.9
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-cCCCccHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP---NEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFH 375 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 375 (600)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 455678888888888888888888888887643111 2223333344555678888888888777641 111101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 007530 376 YSCMIDILGRAGLIHEAYDL-ILNMPFDATASMWGSLLASCRNY------RNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 448 (600)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...+.++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000012233333333333 788889999999999999877777776665
Q ss_pred HHh
Q 007530 449 YAA 451 (600)
Q Consensus 449 ~~~ 451 (600)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.91 E-value=1.1 Score=41.82 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAG----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSC 378 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 378 (600)
.|+.-+..| +.|++.+|...|...++.. ..| ..+-.|..++...|+++.|..+|..+.+.++-.|. ++.+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555443 4566777777777777652 122 23445777777778888887777777766655543 245555
Q ss_pred HHHHHHhcCCHHHHHHHHHcC
Q 007530 379 MIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m 399 (600)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 556666666666666665554
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.91 E-value=7.4 Score=40.57 Aligned_cols=160 Identities=12% Similarity=-0.032 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAG-LHPNE-----QTYISVLSACSH----IGMVEKGKSYFDLMVKQHNVLPNVF 374 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 374 (600)
...++....-.|+-+.+++++.+-.+.+ +.-.. .+|..++..+.. ..+.+.+.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3345555566788888888887765532 22111 233333433332 457888999999997554 6655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHcCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH-HHH
Q 007530 375 HYSCM-IDILGRAGLIHEAYDLILNMPF------DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL-LLS 446 (600)
Q Consensus 375 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 446 (600)
.|... ...+...|++++|.+.|++.-. +-....+--+...+....++++|...+.++.+...-....|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 3456678999999999996521 112344555666778889999999999999986655444554 455
Q ss_pred HHHHhcCCh-------HHHHHHHHHhhh
Q 007530 447 NIYAANRRW-------EEVARARKLIRD 467 (600)
Q Consensus 447 ~~~~~~g~~-------~~a~~~~~~m~~ 467 (600)
-+|...|+. ++|.+.+.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 566788888 888888877754
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.69 E-value=12 Score=37.54 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-----KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY-ISVL 344 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll 344 (600)
..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 44555666666666666666666665543 45666666666554 45666777777654443 3443333 3445
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLPN--VFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.-+...++-+.|..+|+..+.+ +..+ ...|..+|+-=..-|++..+..+=+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 5556677778888888755432 2222 456777777777777777776555554
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.62 E-value=1.6 Score=35.57 Aligned_cols=53 Identities=21% Similarity=0.047 Sum_probs=28.2
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 164 (600)
+..|+.+.|++.|.+.+.. .|.+...|+.-..++.-.|+.++|..-+++.++.
T Consensus 54 aE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4455555555555555544 3445555555555555555555555555555444
No 264
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.49 E-value=11 Score=36.52 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--c----CchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhhCCH
Q 007530 217 YEEALILFRRAQVLGLEYNQFTISSVICACAG--L----AALIQGKQVHAVLCKTGF---GSNMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 217 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~y~~~g~~ 287 (600)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|.+... .++..++.+|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888888888777764443332 1 134556677777766532 2223333333222 11111
Q ss_pred HHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHH
Q 007530 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSHIGM--VEKGKSYFDLM 363 (600)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~ 363 (600)
+. -.+.+..+|+.+.+.|+..+. ...+.++..+..... +..+.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 10 134666777777777766542 333444443333222 34677778877
Q ss_pred HHhcCCCccHHHHHHHH
Q 007530 364 VKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 364 ~~~~~~~p~~~~~~~li 380 (600)
. +.|+++...+|..+.
T Consensus 209 ~-~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 K-KNGVKIKYMHYPTLG 224 (297)
T ss_pred H-HcCCccccccccHHH
Confidence 4 568888777776553
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=1.9 Score=41.14 Aligned_cols=159 Identities=9% Similarity=-0.056 Sum_probs=110.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH----HHHHHhcCCH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM----IDILGRAGLI 389 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 389 (600)
-+|+..+|-..++++.+. .+-|...+...=.+|...|+.+.-...++++.. ...||...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 566777788788899999999999999988863 335555444433 3344578999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 390 HEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD----NAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
++|++.-++. .+.| |.=.-.++.......++..++.+...+-...-.. -...|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998876 4443 3334455666677788999998887776543221 12244455556677799999999998
Q ss_pred HhhhCCCccCCc
Q 007530 464 LIRDSEVKKEKS 475 (600)
Q Consensus 464 ~m~~~~~~~~~~ 475 (600)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444444443
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.28 E-value=0.97 Score=39.78 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=64.6
Q ss_pred HHhcCCHHHHHHHHHcC----CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 383 LGRAGLIHEAYDLILNM----PFDA---TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
+.+.|++++|..-|... |-.+ -.+.|..-..+..+.+..+.|..-..++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44566666666555443 1111 1344555556677889999999999999999998877877888899999999
Q ss_pred HHHHHHHHHhhhCC
Q 007530 456 EEVARARKLIRDSE 469 (600)
Q Consensus 456 ~~a~~~~~~m~~~~ 469 (600)
++|+.-++.+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988765
No 267
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.13 E-value=21 Score=38.93 Aligned_cols=116 Identities=9% Similarity=0.046 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 315 HARSVEVMILFEKMQQA-GLHPNEQ--TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
..+.+.|..++...... ++.+... ....+.......+...++...++.... -..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888776443 2333322 222333222232224566666655421 11233344444555557888888
Q ss_pred HHHHHHcCCCC-CCHHHHH-HHHHHHHHcCChHHHHHHHHHHhc
Q 007530 392 AYDLILNMPFD-ATASMWG-SLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 392 A~~~~~~m~~~-p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+...+..|+.. .+..-|. =+..+....|+.+.|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887421 1222222 244555567888888888888743
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.06 E-value=10 Score=35.23 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=98.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 007530 309 ISGFSRHARSVEVMILFEKMQQAGL--HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 386 (600)
+..-.+.|++++|...|+.+..... +-...+...++.++-+.+++++|+...++.++.++-.|+.. |...+.++..-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3344567788888888888776521 11345666677777778888888888888777777777653 33333333321
Q ss_pred -------CCHHHHHHH-------HHcCC---CCCCHHHH------------HHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 387 -------GLIHEAYDL-------ILNMP---FDATASMW------------GSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 387 -------g~~~~A~~~-------~~~m~---~~p~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+...+.+- +++.| ..||+..- .++..-|.+.|.+.-|..-++++++--|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 122222222 22333 22343221 12445678889999999999999987665
Q ss_pred Ccc---hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 438 NAG---NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 438 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+. .+..+..+|.+.|..++|.+.-+-+.
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 443 45567888999999999998876664
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.62 E-value=6.7 Score=32.24 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
-.+.-+....++|+-++-.+++.++... -++++.....+..||.+.|+..++..++.++.+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455667778888888888888887653 3677778888888999999999999998888888753
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=14 Score=35.14 Aligned_cols=146 Identities=15% Similarity=0.072 Sum_probs=92.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 389 (600)
......|++.+|..+|....... .-+...-..+..++...|+++.|..++..+-.+.. ........+-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 34567788888888888877752 22344555677788888888888888887632210 11111122345566666655
Q ss_pred HHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHH
Q 007530 390 HEAYDLILNMPFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGME--PDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 390 ~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
.+..++-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -.+...-..|..++...|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555553345 56666677777888888888888877777643 3455666677777777664443
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=6.8 Score=37.63 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=112.7
Q ss_pred hhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCCHHH
Q 007530 283 KCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI----SVLSACSHIGMVEK 355 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~ 355 (600)
-.|+..+|-..++++.+ .|..+|+--=.++...|+.+.-...+++.... ..||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45777777777777664 48888998889999999999999999998765 345543332 22334557899999
Q ss_pred HHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-------HHHHHHHHHHHHHcCChHHHHHH
Q 007530 356 GKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT-------ASMWGSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~ 427 (600)
|++.-++..+ +.| |.-.-.++...+.-.|+..++.++..+-...-+ -.-|. ..-.+...+.++.|+.+
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhHHHHH
Confidence 9999887763 333 444555677778889999999999987631111 01122 12223445889999999
Q ss_pred HHHHh--cCCCCCcchHH---HHHHHHHhcCChHHHHHHH
Q 007530 428 AKQLF--GMEPDNAGNHL---LLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 428 ~~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~ 462 (600)
|++-+ +++.+|..... -+-.+-.....|.+-.++-
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 97644 36666653332 2333334444444444333
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.83 E-value=0.78 Score=29.63 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLRE 128 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 128 (600)
+|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566667777777777777777777775
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.46 E-value=1.8 Score=41.03 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQV-----LGLEYNQFTISS 241 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 241 (600)
..++..++..+..+|+.+.+.+.++++.+ -|...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45678899999999999999999998875 3778999999999999999999999998865 577777666544
Q ss_pred HHHH
Q 007530 242 VICA 245 (600)
Q Consensus 242 ll~a 245 (600)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 274
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.29 E-value=22 Score=35.88 Aligned_cols=352 Identities=13% Similarity=0.039 Sum_probs=173.7
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCC
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGMGLN----NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 113 (600)
....++...|.+.+|+.++.+++..=++ -+..+||.++-+|++.=-+ ++-+.+...=..-|.-+|-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfL----El~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFL----ELKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHH----HHHHhcccccChHHHHHHHHHHHHH
Confidence 3456667889999999998888765433 6888899888888764222 1222222222234555555554321
Q ss_pred ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHcCCHHHHH
Q 007530 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR--DVFECKQLHVFALKAAMDRNVF-VGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 114 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~ 190 (600)
+.-++.. |+ . +.|....+..++.-..-.. .+.--.+++..-...-+.|+-. +...|+.-+.+ +.+++.
T Consensus 209 ~~~d~~~-Y~-----k-~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 209 HAFDQRP-YE-----K-FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHhhch-HH-----h-hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 1111100 00 0 2333333333333322211 1222223333333333344322 33344444444 333433
Q ss_pred HHHccCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHH-ccC---c
Q 007530 191 RVFESMP--------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV-------ICACA-GLA---A 251 (600)
Q Consensus 191 ~~f~~m~--------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------l~a~~-~~g---~ 251 (600)
.+-+.+. +.=+.++..++...++.++..+|-+.+.-+..- .|+...-.-+ -+..+ ... +
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tk 357 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTK 357 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHH
Confidence 3322221 223557888888888888888888887766542 3432211111 11111 111 1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhhCC-HHHHHHHHhcCCC---cCHhHHHHHHH----HHHhc---CC
Q 007530 252 LIQGKQVHAVLCKTGFGSNMFAASSLV---DMYAKCGC-VVDAYFVFSGIEE---KNVVLWNTMIS----GFSRH---AR 317 (600)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~~---g~ 317 (600)
+..-..++..+...++..- ....-|+ .-+-+.|. -++|..+++.+.+ -|...-|.+.. .|.+. ..
T Consensus 358 lr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 358 LRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1112223333333322211 1111122 22334444 6667777766543 34444443321 23221 22
Q ss_pred hHHHHHHHHHHHHcCCCCCHH----HHHHHHHH--HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQ----TYISVLSA--CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
..+-+.+-+-..+.|+.|-.+ .-+.|..| +...|++.++.-+-..+. .+.|++.+|..+.-.+....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 334444444455667766432 22333322 345688888877666664 457888888888888888888888
Q ss_pred HHHHHHcCCCCCCHHHHHH
Q 007530 392 AYDLILNMPFDATASMWGS 410 (600)
Q Consensus 392 A~~~~~~m~~~p~~~~~~~ 410 (600)
|.+++.++| |+..+|++
T Consensus 514 A~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhCC--CchhhHHH
Confidence 888888886 56666654
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.88 E-value=11 Score=32.79 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=84.4
Q ss_pred chhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHccCC
Q 007530 17 SSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDEMP 95 (600)
Q Consensus 17 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~ 95 (600)
.-..+.+....+++|+...+..++..+.+.|.+.... +++..++-+| ..+...|++.-. ....+.++=-.|.
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDML 85 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHH
Confidence 3445666677788999999999999999988755444 4445555444 445545544322 2233444433443
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007530 96 QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 164 (600)
.+=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...--.++....+.
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333346778888899999999999988775332 2223355666666666666555555555543
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.88 E-value=12 Score=32.15 Aligned_cols=89 Identities=13% Similarity=0.070 Sum_probs=53.9
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCChHHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP-FDATASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~ 425 (600)
-...++.+.+..+++.+.--..-.|...++. ...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 3456678888888877742222222233333 334667888888888888873 2355555667777777655545555
Q ss_pred HHHHHHhcCCCC
Q 007530 426 IAAKQLFGMEPD 437 (600)
Q Consensus 426 ~~~~~~~~~~p~ 437 (600)
....++++..++
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 556666666554
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.78 E-value=34 Score=37.33 Aligned_cols=174 Identities=12% Similarity=0.050 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHH----HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 007530 71 SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII----GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146 (600)
Q Consensus 71 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~ 146 (600)
...-+++..+...++.|..+-..-.- |...-..+. +-+.+.|++++|..-|-+-+.. +.|. .++.-+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhc
Confidence 34556777778888888888765432 222323333 3455789999999888776554 4443 3455555
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHH
Q 007530 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWSSMVAGFVQNELYEEALILFR 225 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~-~~~~li~~~~~~g~~~~A~~~~~ 225 (600)
....+..-..+++.+.+.|+. +...-+.|+++|.+.++.+.-.++.+...+.... -....+..+.+.+-.++|..+-.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 666666777788888888876 5666688999999999999988888776632111 13344555555565666555443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+... .......+ +-..+++++|.+.+..
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 3221 12222222 2345566666665543
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.73 E-value=17 Score=33.78 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
.|-.=+..-.+.|++++|.+.|+.+...- -+-...+...++.++-+.++++.|....++.++.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33333444556677777777777776542 1123445555566666667777777766666664
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.63 E-value=5.4 Score=38.60 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc--CC----ChHHHHHHHHHHHHhCC---CCChhHHHHHHHH
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAA--KR----DVFECKQLHVFALKAAM---DRNVFVGTALLDV 179 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~ 179 (600)
++.+.+++.|.+.| +.-+.++|.+....... .. ....+..+|+.|.+..+ .++..++.+|+.+
T Consensus 79 ~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 79 KEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 45566778888888 77777766654433332 12 23456677777777643 3344445555443
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=18 Score=33.32 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Q 007530 204 WSSMVAGFVQNELYEEALILFRR 226 (600)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~ 226 (600)
|+--...|.++|.++-|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 44444555555555554444443
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.13 E-value=17 Score=32.85 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=92.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 380 (600)
...||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++..|.+-|...-+...-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 456777777788888888888888888774 332 22222222233346788888776665544333333333332222
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcC
Q 007530 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-------AGNHLLLSNIYAANR 453 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 453 (600)
.+.-++.+|..-+.+--...|..-|...+-.+.-.+-.+ +.+++++.+...++ ..+|.-|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 234466666544433212345566766555443221111 22333333322222 357888999999999
Q ss_pred ChHHHHHHHHHhhhCC
Q 007530 454 RWEEVARARKLIRDSE 469 (600)
Q Consensus 454 ~~~~a~~~~~~m~~~~ 469 (600)
..++|..+|+.....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 282
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.05 E-value=17 Score=33.82 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=99.7
Q ss_pred hCCCCchhHHHHHHHHH-HhcCChHHHHHHHccCCC--CC-----cchHHHHHHHHHcCCChhHHHHHHHHHHHc---CC
Q 007530 62 MGLNNDTLTSNILINFY-SKCGLISGARKVFDEMPQ--RC-----IVSWNTIIGSYTTNGREQEAVALFINMLRE---GK 130 (600)
Q Consensus 62 ~g~~~~~~~~~~li~~y-~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 130 (600)
++-.||+..-|..-+.- .+...+++|+.-|++..+ +. ..+.-.+|..+.+.|++++.++.|.+|+.. .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA- 98 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA- 98 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-
Confidence 34566666555433221 134577788888876643 22 234456788888889999888888887642 1
Q ss_pred C--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCCh----hHHHHHHHHHHHcCCHHHHHHHHccCCCC----
Q 007530 131 T--PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA-MDRNV----FVGTALLDVYAKCGLISDASRVFESMPER---- 199 (600)
Q Consensus 131 ~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~~---- 199 (600)
+ .-+.-+.++++...+...+.+.-..+++..++.- -..+. .+-+.|...|...|.+..-.++++++...
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 1234467777777777777777766666554431 00111 23345667777777777777777665420
Q ss_pred -----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 200 -----------NEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 200 -----------d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
=...|..=|..|..+.+-.+-..+|++..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 12345566667777776666666666554
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.00 E-value=2.1 Score=40.56 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.++..++..+...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455666677778888888888888888888888888888888888888888888888764
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.99 E-value=0.53 Score=28.18 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
+|..+...+...|+++.|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666666677777777777777766663
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.77 E-value=19 Score=35.10 Aligned_cols=126 Identities=17% Similarity=0.042 Sum_probs=70.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHccCCHHHHHHHHHHHH---HhcCCCccHHHHHHH
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLH-P----NEQTYISVLSACSHIGMVEKGKSYFDLMV---KQHNVLPNVFHYSCM 379 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~-p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p~~~~~~~l 379 (600)
|..++.-.+.++++++.|+...+---. . .-..+..|-..|....|+++|.-+..+.. +.+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 445555566677777777766542111 1 12356677777777777777766655432 233333222233333
Q ss_pred H-----HHHHhcCCHHHHHHHHHc-------CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 380 I-----DILGRAGLIHEAYDLILN-------MPFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 380 i-----~~~~~~g~~~~A~~~~~~-------m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+ -+|...|.+-+|.+.-++ ++..|- ......+...|+..|+.+.|..-++.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 234455555555544443 333322 34556677778888888888877777654
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.67 E-value=1.1 Score=27.38 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777743
No 287
>PRK09687 putative lyase; Provisional
Probab=88.59 E-value=24 Score=33.93 Aligned_cols=73 Identities=5% Similarity=-0.015 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
+..+-...+.++++.|+.+-.-.+.+.+..+++ .-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 444444444555555543222222222222221 22345555666654 566666666553 33554444444444
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.53 E-value=2.9 Score=35.76 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++.+.++.++.-+.-+.|..+..-..-+..+...|+|++|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666777766666666677777777777777777665443
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.53 E-value=0.92 Score=27.78 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777744
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.47 E-value=2.9 Score=35.18 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=44.6
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37788888888888888888888888888888889999999999988887665
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.40 E-value=23 Score=35.27 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP----DNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
....+|..+...+++.|.++.|...+.++....+ ..+.....-+......|+.++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999998552 2466777789999999999999999888876
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.82 E-value=35 Score=35.02 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=104.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
..-+++..+.++-++.-...+-.+|..-| .+...|..++..|... ..+.-..+++++++..+. |++...-|+..|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 45567788888877777777788888865 4677888888888877 556677788888887665 555555566666
Q ss_pred HHcCCHHHHHHHHccCCCC------C---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccC
Q 007530 181 AKCGLISDASRVFESMPER------N---EVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLA 250 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~~------d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g 250 (600)
-+ ++.+.+...|.....+ + -..|..++.-- ..+.+..+.+..+.... |..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 65 7777777777654321 1 12566655421 24566666666666532 44444555556666777778
Q ss_pred chHHHHHHHHHHHHhC
Q 007530 251 ALIQGKQVHAVLCKTG 266 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~ 266 (600)
++.++.++...+++..
T Consensus 220 N~~eai~Ilk~il~~d 235 (711)
T COG1747 220 NWTEAIRILKHILEHD 235 (711)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 8888888888777654
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.22 E-value=1.1 Score=26.99 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=18.2
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 160 FALKAAMDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
++++..+. +..+|+.|...|...|++++|+
T Consensus 4 kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 34444332 5666777777777777777664
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.34 E-value=7.8 Score=34.28 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPERN------EVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356778888888888888888888877642 33566777788888888888887777654
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.26 E-value=26 Score=30.97 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--Ccc----HHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ--TYISVLSACSHIGMVEKGKSYFDLMVKQHNV--LPN----VFH 375 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~----~~~ 375 (600)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++...... .++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44455556666666666666666666654444432 3445556666666666666666555321111 111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
|..|. +...+++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 22456777777776655
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.08 E-value=8.2 Score=33.39 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=9.5
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQV 229 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~ 229 (600)
..+.|+..+|+..|.+.-.
T Consensus 104 ~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HhhcccHHHHHHHHHHHhc
Confidence 3444555555555555443
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.86 E-value=2.4 Score=25.28 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777777766665
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.68 E-value=7.1 Score=30.40 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 320 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
+...-++.+....+.|+.....+.+.||.+..++..|.++|+.+..+.|-.-+ .|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 55555666666778899999999999999999999999999999765553333 6776664
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.64 E-value=0.8 Score=38.89 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=64.5
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHH
Q 007530 39 TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118 (600)
Q Consensus 39 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
+++.+...+.+......++.+++.+...+....+.|+..|++.+..+...++++.... .-...+++.+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5677777888888888999998877677799999999999999888888888884332 4445677777777777777
Q ss_pred HHHHHHHH
Q 007530 119 VALFINML 126 (600)
Q Consensus 119 ~~~~~~m~ 126 (600)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77776653
No 300
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.62 E-value=68 Score=35.22 Aligned_cols=165 Identities=14% Similarity=0.084 Sum_probs=99.5
Q ss_pred hhchhHHHhhccCCCCCCHhHHHHHHHHH----hccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007530 15 SFSSSAIASASANANATELSTLQATLQSC----ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90 (600)
Q Consensus 15 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 90 (600)
....-++..++..+..++ +...+.+.| -+.|+++.|.+-+=+-+ |.--. ..+|.-|....++..-..+
T Consensus 348 ~ly~~Ai~LAk~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~----s~Vi~kfLdaq~IknLt~Y 419 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP----SEVIKKFLDAQRIKNLTSY 419 (933)
T ss_pred hhHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh----HHHHHHhcCHHHHHHHHHH
Confidence 334445555665555544 444555544 46889988876554433 43222 2345555555566666666
Q ss_pred HccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 007530 91 FDEMPQR---CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167 (600)
Q Consensus 91 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 167 (600)
++.+.+. +...-+.|+.+|.+.++.+.-.++.+.-- .|.. .+-+...+..|.+.+-.++|..+-....+
T Consensus 420 Le~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~---- 491 (933)
T KOG2114|consen 420 LEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDEAELLATKFKK---- 491 (933)
T ss_pred HHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHHHHHHHHHhcc----
Confidence 6665543 44556789999999999987766655433 3311 22356677777788878877665433222
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHccCCCC
Q 007530 168 RNVFVGTALLDVYAKCGLISDASRVFESMPER 199 (600)
Q Consensus 168 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 199 (600)
...+...+ +-..|++++|.+.+..++-+
T Consensus 492 -he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 492 -HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred -CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 33333433 44568999999999999853
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.39 E-value=7.3 Score=26.39 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCC
Q 007530 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGY 509 (600)
Q Consensus 442 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 509 (600)
...++-++.+.|++++|.+..+.+.+. .|...++...-..+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999988754 36777777777777778887774
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.37 E-value=8.7 Score=29.58 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.+..+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466666777777788999999999999999999999999999988544432 4446766654
No 303
>PRK12798 chemotaxis protein; Reviewed
Probab=84.06 E-value=50 Score=33.23 Aligned_cols=182 Identities=11% Similarity=0.161 Sum_probs=118.7
Q ss_pred hCCHHHHHHHHhcCCC----cCHhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHH
Q 007530 284 CGCVVDAYFVFSGIEE----KNVVLWNTMISG-FSRHARSVEVMILFEKMQQAGLHPNE----QTYISVLSACSHIGMVE 354 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 354 (600)
.|+.++|.+.+..+.. +.+..+-+|+.+ .....++.+|+.+|+...-. -|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5788888888887763 345667777665 44567899999999988763 4432 23344455567889999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHH-HHHHHHHhcC---CHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007530 355 KGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAG---LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430 (600)
Q Consensus 355 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 430 (600)
++..+-......+.-.|-...|. .++..+.+.+ ..+.-..++..|.-..-...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877776666666566443333 3333444333 4455566667774223356888888899999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHh-----cCChHHHHHHHHHhhhC
Q 007530 431 LFGMEPDNAGNHLLLSNIYAA-----NRRWEEVARARKLIRDS 468 (600)
Q Consensus 431 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~ 468 (600)
+..+... ...-...+..|.. ....+++.+.+..+...
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 9987643 2333344555533 34567777766655443
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.79 E-value=0.59 Score=39.71 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=56.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007530 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 220 (600)
++..+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666677777777777777766666778888888888888777777777774332 3334566666666777777
Q ss_pred HHHHHHH
Q 007530 221 LILFRRA 227 (600)
Q Consensus 221 ~~~~~~m 227 (600)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.38 E-value=1.7 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 007530 440 GNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888899988888764
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.86 E-value=28 Score=29.49 Aligned_cols=64 Identities=8% Similarity=0.038 Sum_probs=33.3
Q ss_pred ccCCchhHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCChHHHHHHHccCCCCC-cchHHHHHHHHH
Q 007530 45 RERAPVRGKVCHAKIIGMGLNNDT-LTSNILINFYSKCGLISGARKVFDEMPQRC-IVSWNTIIGSYT 110 (600)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 110 (600)
...++.++..+++.|.-. .|+. ..-..-...+...|++++|.++|+++.+.. ...|..-+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 466677777777666543 2322 111222233446677777777777776533 224444333333
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.69 E-value=32 Score=29.96 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
++++.+.+.++.|+...+..++..+.+.|.+..-.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444455555555555555555555554443333
No 308
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.64 E-value=21 Score=27.80 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 240 (600)
.-+......|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|...| .|...+|.
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344556778999999999999988999999888664 6777777777777777766 45444443
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.82 E-value=2.7 Score=40.24 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCh
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNL 421 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~ 421 (600)
+-|.++|.+++|+..|...+ .+.| +..++..-..+|.+..++.-|+.=.... .+. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998765 4456 7777777778899988888776554443 111 1123455555555667899
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
.+|.+-++.+++++|++. -|-..|.+.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999854 3444455555555544443
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.79 E-value=2.5 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=24.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 440 GNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999987653
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.74 E-value=12 Score=33.45 Aligned_cols=73 Identities=22% Similarity=0.118 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA---MDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
++|++.|-.+...+ .--++.....+...| ...|.+++.+++-.+++.. -.+|+.++.+|++.|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~-~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTP-ELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46777777776665 333444444444333 3566777777777666542 2456667777777777777766663
No 312
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.69 E-value=86 Score=34.27 Aligned_cols=93 Identities=10% Similarity=-0.134 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHH
Q 007530 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME---PDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
..+...|...+|...+..+....+......+.......|..+.+.....+....+ -.-|..|.-....+++.-..+.
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~ 494 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQ 494 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCH
Confidence 3455667777776666554223444444555555556677777766665432211 0123334445555555445555
Q ss_pred HHHHHHHhhhCCCccC
Q 007530 458 VARARKLIRDSEVKKE 473 (600)
Q Consensus 458 a~~~~~~m~~~~~~~~ 473 (600)
+.-.--...|.++.|.
T Consensus 495 ~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 495 SYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 4432222234555443
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.33 E-value=3.3 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=9.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 007530 409 GSLLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~ 431 (600)
+.|...+...|++++|+.+++++
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHH
Confidence 33334444444444444444443
No 314
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.30 E-value=9.3 Score=31.56 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHhc-CCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHH
Q 007530 419 RNLELAEIAAKQLFG-MEPDNAG-NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSK 496 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 496 (600)
.+..++..+++.+.+ -.|.... ....|+-++.+.++++.++++.+.+.+.. |+..++...
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e------------------~~n~Qa~~L 110 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE------------------PNNRQALEL 110 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC------------------CCcHHHHHH
Confidence 345667777777775 3343222 33345666777788888888777776543 344444444
Q ss_pred HHHHHHHHHHCCCc
Q 007530 497 LEKLVEEMKKLGYK 510 (600)
Q Consensus 497 l~~l~~~m~~~g~~ 510 (600)
=+.+.++|.+.|++
T Consensus 111 k~~ied~itkegli 124 (149)
T KOG3364|consen 111 KETIEDKITKEGLI 124 (149)
T ss_pred HHHHHHHHhhccee
Confidence 44566677777764
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=15 Score=35.04 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-C--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 007530 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-R--------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235 (600)
Q Consensus 165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 235 (600)
|......+-..++..-....++++++..+-.+.. + ..++|--++. .-++++++.++..=.+-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4444455555666666666778888777665543 1 2334433333 3467788888888888899999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 236 QFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
.+|+..+++.+.+.+++..|.++.-.++...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888777654
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.47 E-value=60 Score=31.13 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 007530 304 LWNTMISGFSRHARSV---EVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 366 (600)
+...++.+|...+..+ +|..+++.+... -|+ ...+..-+..+.+.++.+++.+.+..|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4445555666555433 455555555443 223 334434455555677777777777777654
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.25 E-value=13 Score=35.57 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=71.9
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC-------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC
Q 007530 62 MGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ-------RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134 (600)
Q Consensus 62 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~ 134 (600)
.|.+....+...++..-....+++++...+-.... |+... .++++.+. .-++++++.++..=++.| +-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYG-iF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYG-IFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhc-cccc
Confidence 35556666677777777667788888887766643 22221 22333332 236778998888888889 8899
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 007530 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAA 165 (600)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (600)
.+++..++..+.+.++...|.++.-.|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877776553
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.15 E-value=28 Score=27.11 Aligned_cols=78 Identities=9% Similarity=0.019 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 007530 49 PVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128 (600)
Q Consensus 49 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 128 (600)
-++|.-|-+++...+-. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+.+..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 46677777777654421 333333334566789999999999999999999999988764 567777777777778777
Q ss_pred C
Q 007530 129 G 129 (600)
Q Consensus 129 g 129 (600)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 6
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.08 E-value=16 Score=31.97 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHh
Q 007530 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR----WEEVARARKLI 465 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 465 (600)
+++|..-+++++.++|+...++..++++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777888888999999999999999987654 33444444444
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.67 E-value=58 Score=30.49 Aligned_cols=238 Identities=14% Similarity=0.178 Sum_probs=134.5
Q ss_pred CCHHHHHHHHccCCC----C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHHccCc
Q 007530 184 GLISDASRVFESMPE----R---NEVTWSSMVAGFVQNELYEEALILFRRAQV---LGL--EYNQFTISSVICACAGLAA 251 (600)
Q Consensus 184 g~~~~A~~~f~~m~~----~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~g~ 251 (600)
.+.++|..-|++..+ + .-.+.-.||..+.+.|++++.++.|.+|.. ..+ .-+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356666666665432 1 122445677788888888888888887753 111 1244566777776666666
Q ss_pred hHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--------c-------CHhHHHHHHHH
Q 007530 252 LIQGKQVHAVLCKT-----GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--------K-------NVVLWNTMISG 311 (600)
Q Consensus 252 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~ 311 (600)
.+.-..+++.-++. +-..--.+-+-|...|...|.+..-.+++.++.. . -...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666655543331 1111112334567777777777777777766542 1 13466677788
Q ss_pred HHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHhcCC--Ccc---HHHHHHHH
Q 007530 312 FSRHARSVEVMILFEKMQQA-GLHPNEQTYISVLSACS-----HIGMVEKGKSYFDLMVKQHNV--LPN---VFHYSCMI 380 (600)
Q Consensus 312 ~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~li 380 (600)
|....+-.+-..++++...- .--|.+.. ..+++-|. +.|.+++|..-|-++.+.+.- .|. ---|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88777777777777766542 22344433 34566664 467888776544444344432 232 22355666
Q ss_pred HHHHhcCC----HHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007530 381 DILGRAGL----IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 381 ~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 427 (600)
.++.+.|- .++|.- ....|.......|+.+|..+ +..+-+++
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 77777662 222211 12345567778888888654 34333333
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.51 E-value=5.7 Score=24.74 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777776643
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.21 E-value=46 Score=35.00 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=92.8
Q ss_pred hhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
-.|+++.|..++-.++++ .-+.++.-+...|..++|+++- ..||.. |.. ..+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-Fel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQR-FEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhhh-hhh----hhhcCcHHHHHHHHHh
Confidence 356777777766666532 3344455556666666666542 223322 222 2356888888777655
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+.....+-...|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 42 44568888888888888888888887653 356677777777777766566555555444442
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 007530 443 LLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 443 ~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
--.+|...|++++..+++..
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHh
Confidence 23356778888888877643
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.17 E-value=4.1 Score=27.57 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 410 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.+.-++.+.|+++.|.+..+.+++++|++...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45667889999999999999999999998643
No 324
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.81 E-value=44 Score=36.36 Aligned_cols=209 Identities=10% Similarity=0.129 Sum_probs=79.2
Q ss_pred HHHHHHHcCCHHHHHHHHccCC---CCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCHHHH--HHHH
Q 007530 176 LLDVYAKCGLISDASRVFESMP---ERNEVTWSSMVAGFVQNEL-------YEEALILFRRAQVLGLEYNQFTI--SSVI 243 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~--~~ll 243 (600)
+|-.+.|||++++|.++..+.. .+....+-..+..|+.+.+ -++...-|++........|++-+ -.+|
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~il 196 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKIL 196 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 5666778888888888873322 2334455666666666432 23445555555444332244322 2333
Q ss_pred HHHHccC--------chHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHH
Q 007530 244 CACAGLA--------ALIQGKQVHAVLCKTGFGS-----NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS 310 (600)
Q Consensus 244 ~a~~~~g--------~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 310 (600)
..|--.. ..+.=.++.-.+++..... +..++..|-+...+-|. ..|.. ..+...| ..
T Consensus 197 g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~~~p~~Y---f~ 266 (613)
T PF04097_consen 197 GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--GSNPLLY---FQ 266 (613)
T ss_dssp HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT--------H---HH
T ss_pred hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--chhHHHH---HH
Confidence 3332211 1233333333333332211 12233222222211111 12222 1122222 23
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---cC
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR---AG 387 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g 387 (600)
.+.-.|+++.|++++-+ ..+...|.+.+...+..|.-.+-.+... ..+.....-.|....+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34556778888777766 2233455555555554443222111111 2221111111112456667777765 34
Q ss_pred CHHHHHHHHHcC
Q 007530 388 LIHEAYDLILNM 399 (600)
Q Consensus 388 ~~~~A~~~~~~m 399 (600)
+..+|.+++--+
T Consensus 342 d~~~Al~Y~~li 353 (613)
T PF04097_consen 342 DPREALQYLYLI 353 (613)
T ss_dssp -HHHHHHHHHGG
T ss_pred CHHHHHHHHHHH
Confidence 677777776655
No 325
>PRK09687 putative lyase; Provisional
Probab=77.54 E-value=70 Score=30.76 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY----EEALILFRRAQVLGLEYNQFTISSVIC 244 (600)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~ 244 (600)
|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++.++..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 4444444444444444322222222222233444444444444554442 3455555544322 344444444444
Q ss_pred HHHc
Q 007530 245 ACAG 248 (600)
Q Consensus 245 a~~~ 248 (600)
++..
T Consensus 114 aLG~ 117 (280)
T PRK09687 114 ATGH 117 (280)
T ss_pred HHhc
Confidence 4433
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.37 E-value=4.6 Score=22.70 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
..+...+...++++.|...+++.++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444555555555554444444
No 327
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=77.09 E-value=53 Score=31.71 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCCCCcch
Q 007530 423 LAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 423 ~a~~~~~~~~~~~p~~~~~ 441 (600)
.|.+...++.+.+|..|..
T Consensus 380 ~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCCCCcHH
Confidence 3566677777888876543
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.02 E-value=96 Score=32.10 Aligned_cols=167 Identities=8% Similarity=0.045 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
.|....-++++.++..-..+-.+.+-.+|.. .+-..+-.++..|.++ ..++-..+|+++.+.. -|.+.+.--+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence 3444445556666655555555555555543 4555666777777776 4566777777777643 344444444444
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCCHHHHHHHHHHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPN------VFHYSCMIDILGRAGLIHEAYDLILNM----PFDATASMWGSLLASCR 416 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 416 (600)
+...++.+.+..+|.++.. .+.|. .+.|..|+..- ..+.+....+..++ +...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444777777777777653 33331 22444444321 23344444444443 22233444455555566
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
...++++|.+++..+++.+..|..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHH
Confidence 67777777777777777665544333
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.00 E-value=61 Score=29.83 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHhcCC-CccHHHHHHHH---HHHHhcCCHHHHHHHHHcC---CCCCCHHHHHH---HHH-H-HHH-
Q 007530 351 GMVEKGKSYFDLMVKQHNV-LPNVFHYSCMI---DILGRAGLIHEAYDLILNM---PFDATASMWGS---LLA-S-CRN- 417 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li---~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~-~-~~~- 417 (600)
.++++|+..|+..-+-+.. ..+...-.|++ +.-+..+++.+|.++|++. ....+..-|.. ++. + |.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4566666666655432211 12222223333 3345678899999999877 22333333332 222 2 222
Q ss_pred cCChHHHHHHHHHHhcCCCCCc
Q 007530 418 YRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
..|.--+...+++-.+++|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 3677778888999999999743
No 330
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.98 E-value=61 Score=29.82 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=16.3
Q ss_pred HHcCChHHHHHHHHHHhcCCCC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
...+++.+|..+++++....-+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888999999988764433
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.92 E-value=50 Score=28.81 Aligned_cols=134 Identities=11% Similarity=0.017 Sum_probs=75.0
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH-HHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS-EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV-GTAL 176 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l 176 (600)
...|.+.+. +++.++.++|+.-|..+.+.| ...= .-....+....+..|+...|...|+++-+....|-+.- ..-|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 344444444 356778888888888888876 3311 11112222334566777777777777766544333321 1111
Q ss_pred HH--HHHHcCCHHHHHHHHccCCCC-C---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007530 177 LD--VYAKCGLISDASRVFESMPER-N---EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234 (600)
Q Consensus 177 i~--~y~~~g~~~~A~~~f~~m~~~-d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 234 (600)
=. .+...|.+++.....+-+..+ + ...-.+|.-+-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11 234567777776666655432 2 2234456666667788888888777776543333
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.52 E-value=23 Score=31.73 Aligned_cols=73 Identities=16% Similarity=-0.005 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhhCCHHHHH
Q 007530 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT---GFGSNMFAASSLVDMYAKCGCVVDAY 291 (600)
Q Consensus 218 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~y~~~g~~~~A~ 291 (600)
++|.+.|-++...+.--+ ..+-..+..|-...+.+++.+++..+++. +-.+|+.++.+|++.|-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555443323 22333333333355566666666555552 22456666777777777777666653
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.04 E-value=6.2 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 440 GNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678999999999999999999988765
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.86 E-value=48 Score=28.05 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHccCC---------CCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007530 174 TALLDVYAKCGLISDASRVFESMP---------ERNEVTWSSMVAGFVQNEL-YEEALILFRRAQVLGLEYNQFTISSVI 243 (600)
Q Consensus 174 ~~li~~y~~~g~~~~A~~~f~~m~---------~~d~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 243 (600)
|.++.-.+.-+++.....+++.+. ..+..+|++++.+..+..- ---+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444332 1355678888888766655 445677888888877888888888888
Q ss_pred HHHHcc
Q 007530 244 CACAGL 249 (600)
Q Consensus 244 ~a~~~~ 249 (600)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 887654
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.71 E-value=19 Score=27.79 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCChhHHHHHH
Q 007530 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AMDRNVFVGTALL 177 (600)
Q Consensus 117 ~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li 177 (600)
++.+-++.+.... +.|++....+.++||.+.+|+..|.++++-+... |. +...|..++
T Consensus 25 e~rr~mN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYD-LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 4555556666666 7778888888888888888888888888876533 32 333555544
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.67 E-value=1.6e+02 Score=33.97 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 353 (600)
|.-.++.--+.|-+.+|..++..-.+.-...|.+...-+...+.+++|.-.|+..-+ ..-.+.+|...|++
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 334445555666677777666544444445555556666667888888777765422 12356788889999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC
Q 007530 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403 (600)
Q Consensus 354 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 403 (600)
.+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+....|
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 999999887731 212222334678888888999999988888774333
No 337
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.58 E-value=1.3e+02 Score=32.83 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=23.1
Q ss_pred HHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHcC
Q 007530 74 LINFYSKCGLISGARKVFDEMP---QRCIVSWNTIIGSYTTN 112 (600)
Q Consensus 74 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 112 (600)
+|-.+.|||.+++|.++..+.. ++....+-..+..|+.+
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 4556668888888888883322 23345556666666554
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.48 E-value=2.2e+02 Score=35.59 Aligned_cols=312 Identities=12% Similarity=0.001 Sum_probs=160.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHHcCCHHHHHHHHcc-CCCCCHHHHHHHHHHHHhCCCH
Q 007530 141 VLCACAAKRDVFECKQLHVFALKAAM--DRNVFVGTALLDVYAKCGLISDASRVFES-MPERNEVTWSSMVAGFVQNELY 217 (600)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~ 217 (600)
+..+--+.+.+..|...++.-..... ......+-.+...|+.-++.|...-+... ...++ ...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 33444455666666666665200000 11122344455577777777776666552 22222 22334455667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhhCCHHHHHHHHhc
Q 007530 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA-ASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 218 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
..|..-|+.+.+.+ ++...+++.++......|.++...-..+.....- .+...- ++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888887653 2236677777777666777766665443333322 222222 2222334456666666655554
Q ss_pred CCCcCHhHHHHH-HH-HHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH----HH------
Q 007530 297 IEEKNVVLWNTM-IS-GFSRH--ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF----DL------ 362 (600)
Q Consensus 297 ~~~~~~~~~~~l-i~-~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----~~------ 362 (600)
..+..+|.+. +. .+.+. .+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++. ..
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4455566654 22 22222 22222223444444321111 12222222211111111 10
Q ss_pred HHHhcCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC-----CHHHHHHHHHHHHHcCChHHHHHH
Q 007530 363 MVKQHNVLPNV------FHYSCMIDILGRAGLIHEAYDLILNM----PFDA-----TASMWGSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 363 ~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~ 427 (600)
.....+..++. ..|..-+..-....+..+-.--+++. ...| -..+|-.....++..|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 10111222221 11211111111111122211111111 1122 246899999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 428 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
.-++.+..+ +..+.-.+......|+...|..+++...+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 988888764 46888999999999999999999998876543
No 339
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.43 E-value=49 Score=27.97 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=68.0
Q ss_pred HHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHHHccCCC---------CCcchHHHHHHHHHcCCC-hhHHHHHHHH
Q 007530 57 AKIIGMGLNNDT--LTSNILINFYSKCGLISGARKVFDEMPQ---------RCIVSWNTIIGSYTTNGR-EQEAVALFIN 124 (600)
Q Consensus 57 ~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~ 124 (600)
..|.+.+..++. ...|.++.-.+..+++.....+++.+.. .+-.+|++++.+..+... ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 344445555543 4567788777777888877777776642 456789999999977766 4467788899
Q ss_pred HHHcCCCCCChhhHHHHHHHHhcCCC
Q 007530 125 MLREGKTPYSEFTVSSVLCACAAKRD 150 (600)
Q Consensus 125 m~~~g~~~p~~~t~~~ll~~~~~~~~ 150 (600)
|.+.+ .+++..-|..++++|.+...
T Consensus 106 Lk~~~-~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 106 LKKND-IEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHHcC-CCCCHHHHHHHHHHHHcCCC
Confidence 98877 88899999999998877533
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.33 E-value=9.3 Score=36.79 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=59.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-
Q 007530 309 ISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA- 386 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~- 386 (600)
..-|.++|.+++|+..+..-.. +.| |.+++..-..+|.+...+..|+.--...+.- -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 4678999999999999998776 467 8999999999999999888877666555421 12334555554
Q ss_pred ------CCHHHHHHHHHcC-CCCCC
Q 007530 387 ------GLIHEAYDLILNM-PFDAT 404 (600)
Q Consensus 387 ------g~~~~A~~~~~~m-~~~p~ 404 (600)
|...||.+=++.. .++|+
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 5555665544443 45666
No 341
>PRK10941 hypothetical protein; Provisional
Probab=74.78 E-value=13 Score=35.33 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
..+.|-.++...++++.|..+.+.++.+.|+++.-+---+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44667778889999999999999999999999887778888999999999999988877654
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.21 E-value=4.7 Score=23.54 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567888899999999999999888754
No 343
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.19 E-value=1.2e+02 Score=31.95 Aligned_cols=341 Identities=9% Similarity=0.019 Sum_probs=197.9
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 007530 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF-TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (600)
-+...|+.+|..--.....+.+..++..++.. .| ..+ -|.....-=.+.|..+.+.++|++.+.. ++..+..|..
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yP-l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~ 118 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YP-LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLS 118 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--Cc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHH
Confidence 35678888888766666667777788888765 33 433 3444555556788999999999998876 5567777776
Q ss_pred HHHHHH-HcCCHHHHHHHHccCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 176 LLDVYA-KCGLISDASRVFESMPE------RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248 (600)
Q Consensus 176 li~~y~-~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 248 (600)
.+.... ..|+.+...+.|+.... .....|...|.--..++++.....+|++..+. | ...|+..-.-+.+
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQ 194 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHH
Confidence 665444 44777778888877654 35667888888888889999999999998763 2 1222222222211
Q ss_pred ---------cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC-HHHHHHHHhcCCCcC---HhHH-------HHH
Q 007530 249 ---------LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC-VVDAYFVFSGIEEKN---VVLW-------NTM 308 (600)
Q Consensus 249 ---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~-~~~A~~~~~~~~~~~---~~~~-------~~l 308 (600)
.-..++..++-....... .-...+. .+.-....+....+. ...- ...
T Consensus 195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~ 261 (577)
T KOG1258|consen 195 LLNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIH 261 (577)
T ss_pred HHhcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHH
Confidence 112233333222222110 0000001 111111111111110 0111 111
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 309 ISGFSRHARSVEVMILFEKMQQA---GLHP----NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
-..+...-...+....|+.-.+. .++| +..+|...+.--...|+.+...-.|+...- ...--.+.|--.+.
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~ 339 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYAR 339 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHH
Confidence 12233333344444445544432 1333 356788888878888999999988888752 22233456666666
Q ss_pred HHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 007530 382 ILGRAGLIHEAYDLILNMP--FDATASMWGSLLAS-CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 458 (600)
-....|+.+-|..++.... ..|+......+-.. +-..|++..|..+++.+.+--|.....-..-+++..+.|+.+.+
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence 6666788888887776551 12222222222222 34478999999999999874477655555566677788888888
Q ss_pred HH
Q 007530 459 AR 460 (600)
Q Consensus 459 ~~ 460 (600)
..
T Consensus 420 ~~ 421 (577)
T KOG1258|consen 420 NY 421 (577)
T ss_pred hH
Confidence 74
No 344
>PF13934 ELYS: Nuclear pore complex assembly
Probab=73.17 E-value=78 Score=29.28 Aligned_cols=106 Identities=20% Similarity=0.235 Sum_probs=55.7
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 007530 305 WNTMISGF--SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382 (600)
Q Consensus 305 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 382 (600)
|...+.|| ..++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+. +...+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 33444443 3456666776666321 12222221 35556666677777777777652 112223333333333
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 007530 383 LGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYR 419 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 419 (600)
..++.+.||..+.+..+..-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556777888777777643222346666666665443
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.38 E-value=5.2 Score=23.33 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=20.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 410 SLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 410 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666778888888888888877775
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.24 E-value=77 Score=32.35 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=63.4
Q ss_pred hcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 314 RHARSVEVM-ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 314 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
..|+...|- +++.-+....-.|+.+...+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345554443 3444444444445555444443 4556777777666665532 2233445666666666677777777
Q ss_pred HHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 393 YDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 393 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
..+-..| +.+ .++.+...-.......|-++++...+++++.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666655 111 12222222333344456666666666666666554
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.10 E-value=21 Score=27.87 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=30.9
Q ss_pred HcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 397 LNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 397 ~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
-.+..-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|..+
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 3445678888888888999999999999888887765333323245443
No 348
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=70.37 E-value=1.2e+02 Score=30.24 Aligned_cols=93 Identities=24% Similarity=0.307 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH------------HHHHHHHcCChHHHHHHHHHHhc--C-CCCC---
Q 007530 377 SCMIDILGRAGLIHEAYDLILNMPFDATASMWGS------------LLASCRNYRNLELAEIAAKQLFG--M-EPDN--- 438 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~--~-~p~~--- 438 (600)
..|...+-.+|++++|.+++.+.+++ ||++ -++.|...+|+-.|.-+.+++.. . +|+-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34566778899999999999988633 3332 34678888999999988888765 2 2221
Q ss_pred -cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccC
Q 007530 439 -AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473 (600)
Q Consensus 439 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 473 (600)
...|..+.......+.+=++.+.++..-+.|-.+.
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 23677888888899999999999998887665444
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=70.16 E-value=1.4e+02 Score=30.74 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHc---CCC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 007530 116 QEAVALFINMLRE---GKT-PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 116 ~~A~~~~~~m~~~---g~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (600)
++...+++..... | + ..+......++..+ .|+...+..+++.+...+...+ .+...+
T Consensus 154 e~i~~lL~~~l~~~~~~-~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~ 214 (413)
T PRK13342 154 EDIEQLLKRALEDKERG-LVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHH
Confidence 4555566554432 3 3 44444455554433 5777777777766654311111 122222
Q ss_pred HHccC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 192 VFESM---PERNEVTWSSMVAGFVQ---NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250 (600)
Q Consensus 192 ~f~~m---~~~d~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 250 (600)
++... ..++...+..+++++.+ .++.+.|+..+.+|.+.|..|....-..+..++...|
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 22221 11222334555555554 5889999999999999998888766666666654444
No 350
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.11 E-value=77 Score=32.04 Aligned_cols=122 Identities=10% Similarity=0.018 Sum_probs=65.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHh
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHPNEQ--TYISVLSACS--HIGMVEKGKSYFDLMVKQHNV-LPNVFHYSCMIDILGR 385 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~ 385 (600)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++...+.... .-....+..++...-.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 445789999999999999987 666554 3444444443 467888999999887643111 0112233333333222
Q ss_pred cCCHHHHHHHHHcCCCCCCH-HHHHHHHHHHHH--cCChHHHHHHHHHHhc
Q 007530 386 AGLIHEAYDLILNMPFDATA-SMWGSLLASCRN--YRNLELAEIAAKQLFG 433 (600)
Q Consensus 386 ~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~--~~~~~~a~~~~~~~~~ 433 (600)
...+.........-+.++.. ....-+.++-++ .|+++.|.-.+-+++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22222222221111111111 233334444443 6889988877777665
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.64 E-value=17 Score=34.29 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+-....|...|.+.+|.++.++++.++|-+...+..|.+.|+..|+--.|.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445678889999999999999999999999999999999999999888887777765
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.07 E-value=1.8e+02 Score=31.29 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHH----HHH-HhcCCChHHHHHHHHHHHH-------hCCCCChhHHHHHHHHHHH
Q 007530 115 EQEAVALFINMLREGKTPYSEFTVSSV----LCA-CAAKRDVFECKQLHVFALK-------AAMDRNVFVGTALLDVYAK 182 (600)
Q Consensus 115 ~~~A~~~~~~m~~~g~~~p~~~t~~~l----l~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~y~~ 182 (600)
...|.+.++...+.| +......+ ..+ ....+|.+.|..++..+.+ .| +.....-+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 457888888887777 22222222 222 4455678888888887766 33 33345556666665
Q ss_pred cC-----CHHHHHHHHccCCCC-CHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcC
Q 007530 183 CG-----LISDASRVFESMPER-NEVTWSSMVAGFVQN---ELYEEALILFRRAQVLG 231 (600)
Q Consensus 183 ~g-----~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 231 (600)
.. +.+.|.++|....+. ++..--.+...|... .+...|.++|...-..|
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 43 445566666554331 222222222222221 34566666666666655
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.72 E-value=63 Score=33.73 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCC--cCH---hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007530 276 SLVDMYAKCGCVVDAYFVFSGIEE--KNV---VLWNTMISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 276 ~l~~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
.|+.-|.+++++++|..++..|.= -.. .+.+.+.+.+.+..-.++....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 466678888888888888887751 112 2333334444444434444444444443
No 354
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.60 E-value=1.1e+02 Score=28.91 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=45.4
Q ss_pred HHcCCChhHHHHHHHHH----HHcCCCCCChhhHHHHHHHHhcCCChH-HHHHHHHHHHHh---C--CCCChhHHHHHHH
Q 007530 109 YTTNGREQEAVALFINM----LREGKTPYSEFTVSSVLCACAAKRDVF-ECKQLHVFALKA---A--MDRNVFVGTALLD 178 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m----~~~g~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~---g--~~~~~~~~~~li~ 178 (600)
+.+.|+...|.++-.-| .+.+ .++|......++........-+ .-..+...+++. | ..-++.....+..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~-~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSE-DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 44555555444433322 2334 5666655555555555443222 223333333332 1 2236677788888
Q ss_pred HHHHcCCHHHHHHHHccCCCCCHHHH
Q 007530 179 VYAKCGLISDASRVFESMPERNEVTW 204 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~~~~ 204 (600)
.|.+.|++.+|+..|-.-..++...+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHH
Confidence 88888888888887755544433333
No 355
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.29 E-value=1.6e+02 Score=30.49 Aligned_cols=102 Identities=10% Similarity=0.080 Sum_probs=68.6
Q ss_pred CCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH---HhcCCHHHHHHHHHcC--CCCCCHH
Q 007530 333 LHPNEQTYI-SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL---GRAGLIHEAYDLILNM--PFDATAS 406 (600)
Q Consensus 333 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~ 406 (600)
..|+..|+. .++.-+...|-+.+|...+..+.. --+|+...|..+|+.= ..+| +..+..+++.| .+-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 456666654 466677778888888888888853 2245777777777643 2334 66677777766 2336777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhc-CCCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFG-MEPD 437 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~ 437 (600)
.|...+.--..+|..+.+-.++-++.+ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 888887777778877777777766665 4544
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.15 E-value=87 Score=28.11 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=50.6
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPN---VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLE 422 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~ 422 (600)
...|++++|..-|..++....-.+. ...|..-..++.+.+.++.|.+-..+. .+.|. ......-..+|.+...++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 3456666666666655432211111 122333334555666666666555443 33332 122222234666778899
Q ss_pred HHHHHHHHHhcCCCCCc
Q 007530 423 LAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 423 ~a~~~~~~~~~~~p~~~ 439 (600)
.|+.-++++++.+|...
T Consensus 186 ealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 186 EALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHHhCcchH
Confidence 99999999999999753
No 357
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.37 E-value=10 Score=38.41 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=54.7
Q ss_pred HhcCCHHHHHHHHHcC-CCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007530 384 GRAGLIHEAYDLILNM-PFDATASMWGSLL-ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 384 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 461 (600)
...+.++.|..++.+. ...|+-..|-+.- .++.+.+++..|..=+.++++++|.....|..-+.++.+.+++.+|...
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3445556666665544 4456543333222 5666677777788778888888887777777777777777888888777
Q ss_pred HHHhh
Q 007530 462 RKLIR 466 (600)
Q Consensus 462 ~~~m~ 466 (600)
++...
T Consensus 95 l~~~~ 99 (476)
T KOG0376|consen 95 LEKVK 99 (476)
T ss_pred HHHhh
Confidence 76554
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.11 E-value=1.9e+02 Score=31.00 Aligned_cols=172 Identities=8% Similarity=0.040 Sum_probs=81.4
Q ss_pred HHHHHHHHccCCCC-CHHHHHHHHH----H-HHhCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC--
Q 007530 186 ISDASRVFESMPER-NEVTWSSMVA----G-FVQNELYEEALILFRRAQV-------LGLEYNQFTISSVICACAGLA-- 250 (600)
Q Consensus 186 ~~~A~~~f~~m~~~-d~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-- 250 (600)
...|.+.++...+. +...-..+.. + +....+.+.|+.+|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45566666665543 3333333322 2 4456678888888877765 33 2223344444454432
Q ss_pred ---chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-hCCHHHHHHHHhcCCCc-CHhHHHHHHHHHH----hcCChHHH
Q 007530 251 ---ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK-CGCVVDAYFVFSGIEEK-NVVLWNTMISGFS----RHARSVEV 321 (600)
Q Consensus 251 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A 321 (600)
+.+.|..++....+.|.+ +....-..+..... -.+...|.+.|....+. .+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 455677777777776633 33222222222222 23455666666655432 2222222222221 22355666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 322 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
..++.+..+.| .|-..--...+..+.. +.++.+...+..+
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 66666666665 3332222233333333 5555544444444
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.08 E-value=45 Score=33.93 Aligned_cols=131 Identities=12% Similarity=0.159 Sum_probs=76.9
Q ss_pred HhhCCHHHH-HHHHhcCCC----cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007530 282 AKCGCVVDA-YFVFSGIEE----KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356 (600)
Q Consensus 282 ~~~g~~~~A-~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 356 (600)
...|++..| .++|+.+.. |+.+..-+. .+...|+++.++..+...... +.....+...+++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 345665554 344444432 344333333 345678888888887766543 445567777888888888888888
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHH
Q 007530 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRN 417 (600)
Q Consensus 357 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~ 417 (600)
...-.-|.. ..+ -+.+........--..|.++++.-.+++. .+ .|...-|..+++.-.-
T Consensus 377 ~s~a~~~l~-~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 377 LSTAEMMLS-NEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY 437 (831)
T ss_pred HHHHHHHhc-ccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Confidence 888777763 222 23333333333334567788888777776 22 3445566666655433
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.48 E-value=1.3e+02 Score=28.79 Aligned_cols=168 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred hhhhhhhhchhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 007530 9 HKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88 (600)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 88 (600)
.....+.+.......-++.|.+++..-+...++.+...-....... +..+++.. ..+.+|+
T Consensus 88 ~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk~N------------------~~Vv~aL 148 (292)
T PF13929_consen 88 QNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFN-YWDLVKRN------------------KIVVEAL 148 (292)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchH-HHHHHHhh------------------HHHHHHH
Q ss_pred HHHc-----cCCCCCcchHHHHHHHHHc--CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007530 89 KVFD-----EMPQRCIVSWNTIIGSYTT--NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFA 161 (600)
Q Consensus 89 ~~~~-----~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (600)
++|+ +-.-.|...-..+++.... +.....--++.+-+...-.-.++..+...++..++..+++..-.+++...
T Consensus 149 ~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~ 228 (292)
T PF13929_consen 149 KLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQC 228 (292)
T ss_pred HHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHh
Q ss_pred HHh-CCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 162 LKA-AMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 162 ~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
... ++..|...|..+|+.-.+.|+..-..++.++
T Consensus 229 ~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 229 IPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.95 E-value=1.7e+02 Score=29.91 Aligned_cols=56 Identities=5% Similarity=-0.066 Sum_probs=25.9
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVL---WNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 337 (600)
+...+..|+.+-+..+++.-..++... ..+.+...+..|+. ++.+.+.+.|..|+.
T Consensus 172 L~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 172 LIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 334455566666666655444332211 11233323344554 334444556666654
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.95 E-value=28 Score=31.57 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+.-++.+.+.+.+++|+...+.- ..+| |...-..|...++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566777888888888877643 4445 456677788889999999999999998888888754
No 363
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=64.40 E-value=1.1e+02 Score=27.78 Aligned_cols=81 Identities=16% Similarity=-0.020 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHH-HHHHHHHH--HHhCCCHHHHHHHHH
Q 007530 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWSSMVAG--FVQNELYEEALILFR 225 (600)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~-~~~~li~~--~~~~g~~~~A~~~~~ 225 (600)
|-...|+--|.+.+...+. -+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=++ +--.|++.-|.+-|.
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 4444444445555444322 4567888888888889999999999888775432 22222222 223577777777666
Q ss_pred HHHHc
Q 007530 226 RAQVL 230 (600)
Q Consensus 226 ~m~~~ 230 (600)
+.-+.
T Consensus 158 ~fYQ~ 162 (297)
T COG4785 158 AFYQD 162 (297)
T ss_pred HHHhc
Confidence 65544
No 364
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.34 E-value=71 Score=25.34 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-.. +.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45566666666655543 2344444555667788888888555555566888888777654 78888888888887766
Q ss_pred cC
Q 007530 230 LG 231 (600)
Q Consensus 230 ~g 231 (600)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 55
No 365
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.22 E-value=1.1e+02 Score=27.42 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=53.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHH--HHHHHHHHHhCCCHH
Q 007530 143 CACAAKRDVFECKQLHVFALKAAMDRN--VFVGTALLDVYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELYE 218 (600)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~ 218 (600)
......++++.|..-+...+..--+.+ ..+--.|.......|.+|+|.+.++....++-.+ ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 445566777777777666654321111 1122235566677788888888877776664333 222335677778888
Q ss_pred HHHHHHHHHHHcC
Q 007530 219 EALILFRRAQVLG 231 (600)
Q Consensus 219 ~A~~~~~~m~~~g 231 (600)
+|..-|.+..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888777777654
No 366
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.84 E-value=3.9e+02 Score=33.72 Aligned_cols=160 Identities=14% Similarity=0.039 Sum_probs=93.3
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHcc-CCCCCcchHHHHHHHHHcCCCh
Q 007530 39 TLQSCARERAPVRGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGARKVFDE-MPQRCIVSWNTIIGSYTTNGRE 115 (600)
Q Consensus 39 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 115 (600)
+..+.-+.+.+..|..-++.-..... .-....+-.+...|+.-+++|....+... ...|+ ...-|-.....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 34455566666666665555210000 11123344445588888888877776663 33332 23344455677999
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHHcCCHHHHHHHHc
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG-TALLDVYAKCGLISDASRVFE 194 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~ 194 (600)
..|...|+.+.+.+ ++...+++.++......+.+....-..+..... ..+....+ +.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999998874 555778888888877777777665544333332 22222222 233344467777777766655
Q ss_pred cCCCCCHHHHHHH
Q 007530 195 SMPERNEVTWSSM 207 (600)
Q Consensus 195 ~m~~~d~~~~~~l 207 (600)
.++..+|.+.
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4556666655
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.44 E-value=26 Score=25.94 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=23.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHH
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDL 395 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 395 (600)
+....++|+..|...+++..-.|+ -.+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556655555543322222 12445555555555555555443
No 368
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.11 E-value=71 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 369
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.99 E-value=19 Score=32.98 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=45.3
Q ss_pred CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 400 PFDATA-SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 400 ~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+.|.. .-|..=+-.+.+.++++.+..--.+++++.|+.......|+........+++|..++.+..
T Consensus 38 ~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 38 CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 345554 3334444455556777777777777777777777777777777777777777777777664
No 370
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.73 E-value=15 Score=28.23 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..+++.++.+|+|......++..+...|++++|.+.+-.+.+++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555566777777777788888888888888887776666543
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.34 E-value=1.5e+02 Score=28.40 Aligned_cols=71 Identities=7% Similarity=0.065 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----HhcCCCccHHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV----KQHNVLPNVFHY 376 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~~ 376 (600)
.+.....|..+|.+.+|.++-++..... +.+...+..++..+...|+--.+.+.++.+. +..|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444556777888888888877776642 3355566677777777777655555555443 234666554443
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.14 E-value=1.3e+02 Score=30.77 Aligned_cols=140 Identities=9% Similarity=0.032 Sum_probs=66.3
Q ss_pred ccCCchhHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHccCCCCCcc--hHHHHHHHHHcCCChhHHHH
Q 007530 45 RERAPVRGKVCHAKIIGMGLNNDTLT--SNILINFYSKCGLISGARKVFDEMPQRCIV--SWNTIIGSYTTNGREQEAVA 120 (600)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~ 120 (600)
..|+.+. ...+++.|..++... ....+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..
T Consensus 11 ~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 11 LFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 3455444 345555676655422 334445556677777666666543333221 11233445556677665444
Q ss_pred HHHHHHHcCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHHcCCHHHHHHHHcc
Q 007530 121 LFINMLREGKTPYS---EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV--GTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 121 ~~~~m~~~g~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
++ +.|....+ ..-. +.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 87 Ll----~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 87 LL----DLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HH----HcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 43 33311111 1111 2233333445543 4444556665554321 22344555667777766666654
Q ss_pred CC
Q 007530 196 MP 197 (600)
Q Consensus 196 m~ 197 (600)
-.
T Consensus 158 g~ 159 (413)
T PHA02875 158 KA 159 (413)
T ss_pred CC
Confidence 33
No 373
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.88 E-value=76 Score=33.47 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 007530 70 TSNILINFYSKCGLISGARKV 90 (600)
Q Consensus 70 ~~~~li~~y~~~g~~~~A~~~ 90 (600)
..+.+...+.+.|..++|+.+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc
Confidence 344555555555555555544
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.47 E-value=88 Score=24.83 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=55.1
Q ss_pred CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 47 RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 47 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
...++|.-|.+++...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-.. +.|-.+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 356788888888887763 3444444445667789999999666666777999999887664 7788888888888787
Q ss_pred HcC
Q 007530 127 REG 129 (600)
Q Consensus 127 ~~g 129 (600)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 766
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.69 E-value=66 Score=25.68 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=24.9
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHH
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLR 127 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 127 (600)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3589999999999999999999998877
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.19 E-value=60 Score=26.55 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 320 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
+..+-+.......+.|+.......++||.+.+++..|..+|+-+..+. .+....|..+++ +-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH---------HHHHHHHHh
Confidence 444555566666789999999999999999999999999999985433 344445666653 445555555
Q ss_pred C
Q 007530 400 P 400 (600)
Q Consensus 400 ~ 400 (600)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.98 E-value=65 Score=24.44 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHH
Q 007530 51 RGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119 (600)
Q Consensus 51 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 119 (600)
.+.++++.+...|+- +....+.+-..-...|+.+.|+++++.++ +....|..+++++-..|.-+-|-
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 456677788777742 22233333333335688888999998888 88888888888888887765553
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.84 E-value=26 Score=22.62 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=14.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 207 MVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.64 E-value=74 Score=28.99 Aligned_cols=60 Identities=12% Similarity=0.038 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK 163 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 163 (600)
.+..|+.+.+.++..+|+...++-++. -|.|..+-..++..++-.|++++|..-++..-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344556666667777777766666655 355555666666666666666666655544444
No 380
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=57.24 E-value=32 Score=32.77 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
.|+.++|..+|+.++.+.|.++....-++...
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~ 160 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFR 160 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH
Confidence 44444555555555555554444444444333
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.14 E-value=65 Score=24.45 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 007530 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEAL 221 (600)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 221 (600)
.++++..++.|+- +......+-.+-...|+.+.|+++++.++ +.+..|..++.++-+.|.-.-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455555555532 22222222222224577788888888877 77777778888777777655543
No 382
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=70 Score=29.66 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=47.1
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
..+...|++-++++....++...|.+..+|..-+.+.+..=+.++|..-|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 44456789999999999999999999999999888888888888888888777654
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.01 E-value=41 Score=30.15 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
|++.++..++.++...|+.++|.+...++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444444444444444
No 384
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.36 E-value=18 Score=20.70 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877777766665543
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.65 E-value=1.4e+02 Score=28.40 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=46.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 007530 208 VAGFVQNELYEEALILFRRAQVL--GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK-- 283 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~-- 283 (600)
|.+++..++|.+++...-+--+. .++|.. .-..|-.|.+.+....+.++-..-++..-.-+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67778888888877755443322 233333 333344566777776666666665554322333335555555543
Q ss_pred ---hCCHHHHHHHH
Q 007530 284 ---CGCVVDAYFVF 294 (600)
Q Consensus 284 ---~g~~~~A~~~~ 294 (600)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 386
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.57 E-value=7.7 Score=37.46 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 386 AGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 386 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
.|.+++|.+.|... +..| ....+.-=.+++.+.++...|++=+..+++++|+...-|-.-..+....|.|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555554433 2222 233333334445555566666666666666666666666666666666666666666666
Q ss_pred HhhhCCCc
Q 007530 464 LIRDSEVK 471 (600)
Q Consensus 464 ~m~~~~~~ 471 (600)
...+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 66555544
No 387
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.31 E-value=3.4e+02 Score=30.38 Aligned_cols=310 Identities=12% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007530 156 QLHVFALKAAMDRN-VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234 (600)
Q Consensus 156 ~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 234 (600)
+++..-...++.++ ......-...+...|..++|++- ....|+++.|-.++++....
T Consensus 332 eFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~h------------------AlaA~d~~~aa~lle~~~~~---- 389 (894)
T COG2909 332 EFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDH------------------ALAAGDPEMAADLLEQLEWQ---- 389 (894)
T ss_pred HHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHH------------------HHhCCCHHHHHHHHHhhhhh----
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHh-----------
Q 007530 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV----------- 303 (600)
Q Consensus 235 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~----------- 303 (600)
....+++..-....+.+-..-+..++...-.-+-......++.+|..+..+....=..
T Consensus 390 -----------L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a 458 (894)
T COG2909 390 -----------LFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA 458 (894)
T ss_pred -----------hhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH
Q ss_pred HHHHHHHHHH-hcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHH
Q 007530 304 LWNTMISGFS-RHARSVEVMILFEKMQQA----GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378 (600)
Q Consensus 304 ~~~~li~~~~-~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 378 (600)
.|+++-.... ..|++++|+++-+..... -..+..+.+..+..+..-.|++++|..+.+.. ++..-.-+..++..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a-~~~a~~~~~~~l~~ 537 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA-EQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH-HHHHHHcccHHHHH
Q ss_pred HHHH-----HHhcC--CHHHHHHHHHcC------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc------CCCCCc
Q 007530 379 MIDI-----LGRAG--LIHEAYDLILNM------PFDATASMWGSLLASCRNYRNLELAEIAAKQLFG------MEPDNA 439 (600)
Q Consensus 379 li~~-----~~~~g--~~~~A~~~~~~m------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~p~~~ 439 (600)
.+.. +...| ..++.+..|... ...-.......-+..+...-+++.+..-....++ ..|.++
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Q ss_pred chHH-HHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc------ccCcchHHHHHHHHH
Q 007530 440 GNHL-LLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK------RNHPRIAEIYSKLEK 499 (600)
Q Consensus 440 ~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~l~~ 499 (600)
..-. .|+.++...|+.++|....+++..-.....+...|...... ...|+..++-..+.+
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
No 388
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.22 E-value=59 Score=34.11 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHH
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPN--VFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~ 425 (600)
.|+...|...+.... ...|. ......|...+.+.|...+|-.++.+. .+ ...+.++..+.+++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 456666666655543 22331 112334455556666666666665443 11 234456667777777777888888
Q ss_pred HHHHHHhcCCCCCcchHHHHHH
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
+.++.+++++|+++..-..|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 8888888888777766555443
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.19 E-value=15 Score=30.30 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=25.1
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 007530 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145 (600)
Q Consensus 111 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~ 145 (600)
..|.-.+|-.+|++|++.| -|||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G-~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERG-NPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCC-CCCcc--HHHHHHHh
Confidence 3467778999999999999 88874 67777654
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.04 E-value=1.2e+02 Score=28.89 Aligned_cols=87 Identities=11% Similarity=0.112 Sum_probs=44.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH-
Q 007530 105 IIGSYTTNGREQEAVALFINMLREG-KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK- 182 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~- 182 (600)
=|.+++..++|.+++...-+--+.- .+||. ....-|-.|++.+....+.++-..-++.--..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 4677777788887776543332211 13333 2333333456666666665555544443222233335555555544
Q ss_pred ----cCCHHHHHHHH
Q 007530 183 ----CGLISDASRVF 193 (600)
Q Consensus 183 ----~g~~~~A~~~f 193 (600)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 36666666554
No 391
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.83 E-value=4e+02 Score=30.71 Aligned_cols=123 Identities=10% Similarity=-0.071 Sum_probs=54.2
Q ss_pred CchhHHHHHHHHHHhhCCHHH-HHH-HHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVD-AYF-VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~-A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
++..+-.....++...+..+. +.. +..-+..+|...-.+.+.++.+.|....+...+..+.+ .+|...=...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHH
Confidence 344444444444444443221 112 22223345555555556666666654444333433332 2344444445555
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
+...+. +++...+..+.+ .|+..+-...+.++++.+....+...+...
T Consensus 831 L~~l~~-~~a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHhccc-cchHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 555554 233344433332 344445555555555543233344444333
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.34 E-value=34 Score=22.12 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=10.3
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 007530 310 SGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~ 330 (600)
.+|...|+.+.|.+++++...
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 344444555555555554443
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.58 E-value=54 Score=27.65 Aligned_cols=64 Identities=14% Similarity=-0.008 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 390 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
+.|.++.+-|+ ...............|++..|.++.+.++..+|++.......+++|.+.|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 55666667664 23333344555667899999999999999999999888888888887665433
No 394
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=51.19 E-value=15 Score=25.95 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=19.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChh
Q 007530 112 NGREQEAVALFINMLREGKTPYSEF 136 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~ 136 (600)
+-+++.|+..|.++...|.+||+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3478899999999988876887765
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.12 E-value=43 Score=24.83 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=34.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPN--EQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
..++.++|+..|....+.-..|. -.++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999988887643332 246778888999999888877654
No 396
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=49.68 E-value=3e+02 Score=28.10 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
...|+.-|...|++.||...++++ |+-...+++.+++.+.-+.++-+.-..+++....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 345777888899999999999987 5555788899999988888877655555555543
No 397
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.52 E-value=1.1e+02 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 408 WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 408 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
..-|.-++.+.++++.+++..+.+++.+|+|..
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 334566788889999999999999999998764
No 398
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.78 E-value=2.9e+02 Score=27.68 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHH-hcCCHHHHHHHHHc
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILG-RAGLIHEAYDLILN 398 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~ 398 (600)
.+.+.|-+..|.++.+-+. .+.| |+.....+|+.|+ ++++++--.++++.
T Consensus 112 ~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4455566666666655554 2233 3334444455554 45555555555544
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.53 E-value=36 Score=32.59 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=34.7
Q ss_pred CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007530 200 NEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVI 243 (600)
Q Consensus 200 d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 243 (600)
|.. -||..|....+.||+++|+.++++.++.|+.--..||...+
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 444 46799999999999999999999999999776666655443
No 400
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.38 E-value=3.9e+02 Score=29.36 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHccCchHHHHHHHHHHHHhC--CCC
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT----------ISSVICACAGLAALIQGKQVHAVLCKTG--FGS 269 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~ 269 (600)
.+-..|+-.|-...+++..+++.+.++. -||..- |.-.++-=-+.|+-++|..+.-.+++.. +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455666778888888888888888876 343322 2223333345567777777766666543 233
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT---YISVLSA 346 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a 346 (600)
++||-||++-+ .|- +-+.|...+..+.|++.|++..+ +.|+... +..|+.+
T Consensus 279 ---------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 45666776422 110 11234555666778888888766 5676543 4444444
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 426 (600)
-.+ .++.-.++ + . .--.|-..++|.|.+++-.++++-. ..+.+..-.+|+.+|.+
T Consensus 333 aG~--~Fens~El-q----~--------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL-Q----Q--------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH-H----H--------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 322 11111111 0 1 1122345567888888777666532 34455566788999999
Q ss_pred HHHHHhcCCCC
Q 007530 427 AAKQLFGMEPD 437 (600)
Q Consensus 427 ~~~~~~~~~p~ 437 (600)
+.+.|.+++|.
T Consensus 388 Aae~mfKLk~P 398 (1226)
T KOG4279|consen 388 AAEMMFKLKPP 398 (1226)
T ss_pred HHHHHhccCCc
Confidence 99999998875
No 401
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.32 E-value=88 Score=28.64 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCC-------hHHHHHHHHHHhcCC--CC----CcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 408 WGSLLASCRNYRN-------LELAEIAAKQLFGME--PD----NAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 408 ~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+.-+...|+..++ +..|.+.++++.+.+ |. .......++.++.+.|+.++|.+.|..+...+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3334444555555 334555555555432 21 23466688999999999999999999887654
No 402
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.29 E-value=2.2e+02 Score=27.15 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-------hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEF-------TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
+.+-..+.+++++|+..+.+....| +..|.. +...+...|...|+...-.+......+.-......--.-++
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg-~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKG-VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCC-CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Q ss_pred HHHHHc-----CCHHHHHHHHccCCCC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 178 DVYAKC-----GLISDASRVFESMPER---------NEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 178 ~~y~~~-----g~~~~A~~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
...... ..++.-+++.....+- ....-..+|..+.+.|.+.+|+.+...+..+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 403
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.13 E-value=1.3e+02 Score=24.80 Aligned_cols=42 Identities=10% Similarity=-0.013 Sum_probs=32.8
Q ss_pred HHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 423 LAEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 423 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
.+..+|+.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777775 5566677888888899999999999988864
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.64 E-value=78 Score=20.83 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=21.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777776666666665553
No 405
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.83 E-value=3.7e+02 Score=28.51 Aligned_cols=123 Identities=21% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHHHHhcCC----------CccHHHHHHHHHHHHhcCCHHHHHHHHHcC----------CCCCCHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNV----------LPNVFHYSCMIDILGRAGLIHEAYDLILNM----------PFDATAS 406 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~p~~~ 406 (600)
+.+...++++..-|...++.+.. +-.+.+.-.+.+++...|+.+.|.+++++. .+.|...
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ----------------HHHHHHHHHHHcCChHHHHHHHHHHhcCCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHhhhC
Q 007530 407 ----------------MWGSLLASCRNYRNLELAEIAAKQLFGMEPD-NAGNHLLLSNIYA-ANRRWEEVARARKLIRDS 468 (600)
Q Consensus 407 ----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 468 (600)
+.-..+....+.|-...|.+..+-++.++|. ||.....+++.|+ ++..+.--+++++..+..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 007530 469 E 469 (600)
Q Consensus 469 ~ 469 (600)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.62 E-value=81 Score=20.74 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=22.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVIC 244 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 244 (600)
..+.|...++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666777777777777777766666665553
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.20 E-value=62 Score=32.77 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 439 AGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 439 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
.+++..++-+|.-.+|+.+|.++|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666554
No 408
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.11 E-value=2.4e+02 Score=30.39 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
.....-++..|.+.|..+.+..+...+-..-.. ..-|..-+..+.++|+......+-+
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444455555555555555544443332111 1123333444455555544444433
No 409
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.91 E-value=52 Score=20.12 Aligned_cols=19 Identities=11% Similarity=-0.193 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCChHHHHHH
Q 007530 409 GSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~ 427 (600)
-++...+...|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444555555555555
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.70 E-value=23 Score=29.28 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=25.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
...|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999984 55666554
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.05 E-value=35 Score=31.20 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 383 LGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
..+.|+.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.+++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566777777777665 3333 46778777777788888888888888888888875
No 412
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.88 E-value=3.2e+02 Score=26.64 Aligned_cols=84 Identities=13% Similarity=-0.070 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007530 351 GMVEKGKSYFDLMVKQHNV---LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 427 (600)
+-.+.+.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467788888887653111 3355566667777778887666666666555456788888899999889999998999
Q ss_pred HHHHhcC
Q 007530 428 AKQLFGM 434 (600)
Q Consensus 428 ~~~~~~~ 434 (600)
++.++.-
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9999883
No 413
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.85 E-value=4.9e+02 Score=28.80 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 302 (600)
.+...|+..|...+++.+|.+.+-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3344588999999999999999988876644
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.17 E-value=71 Score=24.60 Aligned_cols=52 Identities=19% Similarity=0.072 Sum_probs=33.9
Q ss_pred HHcCChHHHHHHHHHHhcCCCC--C-------cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 416 RNYRNLELAEIAAKQLFGMEPD--N-------AGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~--~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
...||+..|.+.+.+....... + ......++.++...|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466777776666666552211 1 12334577788889999999999887764
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.95 E-value=87 Score=28.02 Aligned_cols=52 Identities=15% Similarity=0.019 Sum_probs=36.9
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
....+.+......+.+.+.....|+..+|..++..+...|+.++|.+..+++
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666555555555544456788888888888888888888888887776
No 416
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.44 E-value=2.8e+02 Score=25.71 Aligned_cols=148 Identities=13% Similarity=0.169 Sum_probs=80.5
Q ss_pred HHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
.+..|++.-++.-|-..++++.+| ..+-.+ |--|.+..+..--.++.+-...++++-+...+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 344555555555555555555544 111111 222334443333333444444455555554444443 3456666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007530 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 335 (600)
...++.-... -| +-.+..+|.-..+|.+.....|+..+. .+++++|.+.+.++-+.|+.|
T Consensus 212 lNnLQst~~g------------------~g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVNG------------------FG-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhcc------------------cc-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 5554433321 01 223456677667788877777777654 467889999999998888887
Q ss_pred CHHHHHHHHHHHH
Q 007530 336 NEQTYISVLSACS 348 (600)
Q Consensus 336 ~~~t~~~ll~a~~ 348 (600)
.... +.+.+.+-
T Consensus 272 ~Dii-~~~FRv~K 283 (333)
T KOG0991|consen 272 EDII-TTLFRVVK 283 (333)
T ss_pred HHHH-HHHHHHHH
Confidence 6542 33444443
No 417
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.12 E-value=51 Score=31.57 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 344 (600)
.-||..|..-.+.|+.++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788888899999999999999999988876666665544
No 418
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.76 E-value=3.4e+02 Score=26.34 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH----------hcCCHHH
Q 007530 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG----------RAGLIHE 391 (600)
Q Consensus 322 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----------~~g~~~~ 391 (600)
.++++.|.+.++.|.-..|..+.-.+++.=.+...+.+|+.+..+ ..-|..|+..++ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888889999999999988888888888899999999988632 222333333332 2578888
Q ss_pred HHHHHHcCC
Q 007530 392 AYDLILNMP 400 (600)
Q Consensus 392 A~~~~~~m~ 400 (600)
-.++++..|
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 888888765
No 419
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=41.75 E-value=28 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHHHHHHHCCCccCCcc
Q 007530 488 PRIAEIYSKLEKLVEEMKKLGYKPETEH 515 (600)
Q Consensus 488 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~ 515 (600)
+...++++.+++..++++..|+.||...
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4456788889999999999999999653
No 420
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=41.68 E-value=1.4e+02 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc
Q 007530 320 EVMILFEKMQQAGLHPNE-QTYISVLSACSHI 350 (600)
Q Consensus 320 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 350 (600)
+|+.-|++... +.|+. .++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 44444444444 56764 5666676666543
No 421
>PF15469 Sec5: Exocyst complex component Sec5
Probab=40.09 E-value=2.6e+02 Score=24.64 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=16.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
.-|.-|.+.|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445666777888888887777653
No 422
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.50 E-value=93 Score=23.51 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHH
Q 007530 52 GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118 (600)
Q Consensus 52 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
...+++.+++.|+-.. ...-..-+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4557778877774322 22223334556788888999888888888888888888877765544
No 423
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.48 E-value=1.7e+02 Score=24.12 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007530 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164 (600)
Q Consensus 117 ~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 164 (600)
+..+-++.....+ +.|++......++||.+.+|+..|..+++-+...
T Consensus 67 EvrkglN~l~~yD-lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYD-LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccc-cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455555666 7788888888888888888888888888776543
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.41 E-value=48 Score=23.27 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=22.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
|..-.-.+|.||.+.|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445578899999999999999888765
No 425
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=42 Score=36.91 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=55.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 007530 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422 (600)
Q Consensus 343 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 422 (600)
+|..+.+.|-.+-|+.+.+.=... .++...+|+++.|++.-+++. |..+|..|......+|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 455556677777676665432211 233457899999998888864 7788999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007530 423 LAEIAAKQLFGME 435 (600)
Q Consensus 423 ~a~~~~~~~~~~~ 435 (600)
.|+..+++....+
T Consensus 690 IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFE 702 (1202)
T ss_pred HHHHHHHHhhhhh
Confidence 9999988876544
No 426
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.90 E-value=3.7e+02 Score=26.02 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC
Q 007530 85 SGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149 (600)
Q Consensus 85 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~ 149 (600)
.-|.++|..-. +...-|.+|+.+-+.+.-+.-+++ +|||..+.......+...|
T Consensus 184 ~F~~~lFk~~~--~Ek~i~~lis~Lrkg~md~rLmef---------fPpnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 184 SFAVKLFKEWL--VEKDINDLISSLRKGKMDDRLMEF---------FPPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred HHHHHHHHHHH--hhccHHHHHHHHHhcChHhHHHHh---------cCCcchhHHHHHHHHhHhh
Confidence 34555555432 122345566665444433333322 6777777666655555444
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.82 E-value=51 Score=23.15 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
-.-.+|.||.+.|++++|.+++.++..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344578889999999999988888754
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.69 E-value=4.3e+02 Score=26.73 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE------RNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3466788899999999999999998553 1344566777777778888888877777655
No 429
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.25 E-value=3e+02 Score=24.75 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=42.2
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhH--HHHHHHHHHhcCChHHH
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSN--MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVL--WNTMISGFSRHARSVEV 321 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A 321 (600)
+...++++.|...+...+...-+.+ ..+---|.......|.+++|...++....++-.+ ...-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 3444555555555544443211111 1111123445555666666666666665554333 22222346666666666
Q ss_pred HHHHHHHHHcC
Q 007530 322 MILFEKMQQAG 332 (600)
Q Consensus 322 ~~l~~~m~~~g 332 (600)
..-|.+....+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 66666666553
No 430
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=37.74 E-value=13 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCChh
Q 007530 113 GREQEAVALFINMLREGKTPYSEF 136 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~ 136 (600)
-+++.|+..|..+...|.+||+.+
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCHHHHHHHHHHHHHcCCCChHhc
Confidence 467888888888888877887754
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.20 E-value=6.7e+02 Score=28.53 Aligned_cols=209 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHccCch--HHHHHHHHHHHHhCCCCchhHHHHHH
Q 007530 204 WSSMVAGFVQNELYEEALILFRRAQV---LGLEYNQFTISSVICACAGLAAL--IQGKQVHAVLCKTGFGSNMFAASSLV 278 (600)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~a~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~ 278 (600)
|..|+..|...|+.++|++++.+... ..-.--..-+--++.-..+.+.. +...++-....+..-.....+++..-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred HHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------
Q 007530 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM------ 352 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 352 (600)
.--+.+=..++.. .|......+-++.+++.+....-.++..-.+.++..|...=+
T Consensus 587 ~~~~~sis~~~Vl-------------------~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 587 KQEAESISRDDVL-------------------NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCCHHHHH-------------------HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Q ss_pred ------HHHH-HHHHHHHHHhcCC---------CccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 007530 353 ------VEKG-KSYFDLMVKQHNV---------LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416 (600)
Q Consensus 353 ------~~~a-~~~~~~~~~~~~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 416 (600)
.+.. .+-+..+.+.... .|....|.-..-.++|.|+-++|..++-.
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~------------------ 709 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVH------------------ 709 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHH------------------
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
..+|++.|........+.++.+...|..+...|
T Consensus 710 ~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 710 ELDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred HhcchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 432
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.98 E-value=68 Score=32.81 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=46.9
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.....++++.|...+.++++++|+....|..-+.++.+.+.+..|..=.....+..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 34456789999999999999999998888888889999999999988776666544
No 433
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.92 E-value=1.9e+02 Score=21.98 Aligned_cols=63 Identities=8% Similarity=-0.050 Sum_probs=45.2
Q ss_pred CCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 007530 31 TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95 (600)
Q Consensus 31 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 95 (600)
|....|...++.--... . +=.++|+.....|+..|+.+|..+++...-+=..+...+++..|.
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~-eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-A-EEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccC-H-HHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555665554433222 1 223899999999999999999999998877767777778877764
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.75 E-value=1.4e+02 Score=22.59 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007530 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 220 (600)
.++..+.+.|+- +....-...+..-+.++|.++++.++.+...+|..+..++-..|...-|
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 455555555532 2222222334455678888888888888888888888888777765444
No 435
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.78 E-value=2.5e+02 Score=27.58 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh------hHHHHHHHHhcCCChHHHHHHHHHHHH-----hCCCCChhH
Q 007530 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEF------TVSSVLCACAAKRDVFECKQLHVFALK-----AAMDRNVFV 172 (600)
Q Consensus 104 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 172 (600)
.++...-+.++.++|++.++++.+. +..... .-....+.+...||+..++++++...+ .++++++.+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~--~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEK--LKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH--HHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Q ss_pred -HHHHHHHHHHc-CCHHHHHH
Q 007530 173 -GTALLDVYAKC-GLISDASR 191 (600)
Q Consensus 173 -~~~li~~y~~~-g~~~~A~~ 191 (600)
|..+-.-|.++ |++....+
T Consensus 158 ~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHHH
No 436
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.98 E-value=1.1e+02 Score=24.25 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=9.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 007530 207 MVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m 227 (600)
++..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555554444443
No 437
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.90 E-value=2.1e+02 Score=21.91 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChH-HHHHHHHHh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNIYAANRRWE-EVARARKLI 465 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 465 (600)
|......+...+...|+++.|...+-.+++.+|+ +...-..|+.++...|.-+ -+.+.+.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566677777888888888888888888887654 3556677777777777633 444444443
No 438
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.82 E-value=5.2e+02 Score=26.50 Aligned_cols=91 Identities=8% Similarity=0.007 Sum_probs=43.1
Q ss_pred CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHH
Q 007530 299 EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSC 378 (600)
Q Consensus 299 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 378 (600)
..|...-..-+.+....|. .+|...+...... |+..+...+.......|. +++...+..+.++ +. +-..
T Consensus 189 d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~~--vr~~ 257 (410)
T TIGR02270 189 DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----AA--TRRE 257 (410)
T ss_pred CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----hh--hHHH
Confidence 3444444445555555555 4555544442221 222222222222222222 3555555555432 22 4445
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC
Q 007530 379 MIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~ 400 (600)
.+.++++.|+...+.-+++.|.
T Consensus 258 a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 258 ALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHHcCCcchHHHHHHHhc
Confidence 6666777777777766666664
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.72 E-value=1.8e+02 Score=24.67 Aligned_cols=42 Identities=7% Similarity=-0.048 Sum_probs=16.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 007530 143 CACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 184 (600)
......++.-.|..+++.+.+.++..+..|--.-++.+...|
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 28 ELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333333333444444444444444333332222234444444
No 440
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=33.85 E-value=5.7e+02 Score=26.72 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH-HhcCCChHHHHHHHHHHHHhC
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA-CAAKRDVFECKQLHVFALKAA 165 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g 165 (600)
|+..|...|.-+-+.+.+.+.-.+|.+|.... |.++..|.....- +....+++.|+.++...++..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 66677777766666666777777777777652 3333333332222 222233666666666666654
No 441
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.84 E-value=2.2e+02 Score=27.94 Aligned_cols=84 Identities=11% Similarity=-0.000 Sum_probs=62.0
Q ss_pred HHHHhcCCHHHHHHHHHcC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 381 DILGRAGLIHEAYDLILNM----PFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
.-|.+..++..|...|.+- .-.|| .+.|+.=..+-...|++..++.=..+++.++|.+...|..-+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 4466777788888777654 11233 56666666666678999999999999999999998888888888888888
Q ss_pred hHHHHHHHHH
Q 007530 455 WEEVARARKL 464 (600)
Q Consensus 455 ~~~a~~~~~~ 464 (600)
+++|....+.
T Consensus 169 ~~~a~nw~ee 178 (390)
T KOG0551|consen 169 FAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHhh
Confidence 6666655443
No 442
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.82 E-value=5.2e+02 Score=26.21 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCC------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 007530 68 TLTSNILINFYSKCGLISGARKVFDEMPQ------RCIVSWNTIIGSYTTNGREQEAVALFINMLRE 128 (600)
Q Consensus 68 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 128 (600)
...+.-+.+.|..||+++.|.+.+.+... .-+..|-.+|..-.-.|+|........+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34567788899999999999999988543 23445777777777778887777766666543
No 443
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.75 E-value=1e+02 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=29.9
Q ss_pred HHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 396 ILNMPFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 396 ~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
|....++|. ..+..+-+..+.+++|+..|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333344553 3567777888889999999999999999998864
No 444
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.41 E-value=2.7e+02 Score=22.78 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHh-------cCCCCCcchHH----HHHHHHHhcCChHHHHHHHHHh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLF-------GMEPDNAGNHL----LLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 465 (600)
..+..|-.++...|++++++...++.+ ++..+....|. .-+.++...|+.++|...|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 344445555556666665555555544 35555444443 3345567778888888887643
No 445
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.94 E-value=2.9e+02 Score=22.75 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHH-HHHHHHHHcCChHHHHHH
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWG-SLLASCRNYRNLELAEIA 427 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~~~~~~a~~~ 427 (600)
.+..++..++.-.|..++|.++++...--++....| .++..|....+.++...+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344555555566666666666666654333333222 344455444444444433
No 446
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=31.19 E-value=1.7e+02 Score=30.94 Aligned_cols=134 Identities=15% Similarity=0.041 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHcC-CCCCC--HH
Q 007530 333 LHPNEQTYISVLSACSHI--GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR-AGLIHEAYDLILNM-PFDAT--AS 406 (600)
Q Consensus 333 ~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p~--~~ 406 (600)
-.|+..|...++.-...- ..-+-|-.++..|. ..+.|--...| +...|.| .|+..-|...+... ...|. .+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346777666665444332 22344555555553 23344322222 2334444 57888887776654 22332 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
....|.......|-...|-.++.+.+.+....|-++..++++|....+.+.|++.|+...+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 444566666667777888889999888877778899999999999999999999998876654
No 447
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.17 E-value=5.5e+02 Score=25.73 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH------hcCCHHHHHHHHHcCC--CCCCHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG------RAGLIHEAYDLILNMP--FDATASMW 408 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~------~~g~~~~A~~~~~~m~--~~p~~~~~ 408 (600)
..|+..+-..|.+.|+.+.|.+++++..-..+ .++...+. ..|. .+++ ..-|...|
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~--------~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN--------CRLDYRRPENRQFF 103 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc--------cccCCccccchHHH
Confidence 44666666777778888877777776642111 00111110 0000 0111 11244444
Q ss_pred HH---HHHHHHHcCChHHHHHHHHHHhcCCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHhhh
Q 007530 409 GS---LLASCRNYRNLELAEIAAKQLFGMEPD-NAGNHLLLSNIYA-ANRRWEEVARARKLIRD 467 (600)
Q Consensus 409 ~~---ll~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 467 (600)
.+ .+..+.+.|-+..|.+..+-++.++|. ||-.-...++.|+ ++++++--.++.+....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44 445667789999999999999999998 8777777777775 77888888887776554
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=5.2e+02 Score=25.37 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHH-----hcCCHHHHHHHHHcCCC---CCCHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQ---HNVLPNVFHYSCMIDILG-----RAGLIHEAYDLILNMPF---DATAS 406 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~---~p~~~ 406 (600)
.........|++.|+-+.|.+.++...++ .|.+.|+..+..=+..+. -...++.|..++++-+. +.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555666778888888887777654332 255555544433222211 12345666677766541 11123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+|..+- |....++.+|-.+|-..+.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333322 2334567777766666554
No 449
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.01 E-value=3.5e+02 Score=28.53 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHccCCCC--CHH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 174 TALLDVYAKCGLISDASRVFESMPER--NEV---TWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 174 ~~li~~y~~~g~~~~A~~~f~~m~~~--d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..|+.-|.+.+++++|..++..|.=. ... +.+.+.+...+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45778899999999999999888521 122 334445555555544555555555543
No 450
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.96 E-value=8.8e+02 Score=28.00 Aligned_cols=254 Identities=11% Similarity=0.011 Sum_probs=143.8
Q ss_pred HHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 007530 89 KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168 (600)
Q Consensus 89 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 168 (600)
.+...+..+|...-...+..+.+.+. ++++..+..++.. +|...-...+.++...+........+..+++. +
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 44444456677666666777766664 3455555555543 24444445555554432211112233333332 4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 169 NVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248 (600)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 248 (600)
|..+-.+.+..+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHH
Confidence 666666666666654321 123445556667776666667777666554322 2222 24555555666667766
Q ss_pred cCchHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH-HHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007530 249 LAALIQ-GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326 (600)
Q Consensus 249 ~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 326 (600)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 665432 2333334433 456778888888888888765542 34455556676666667777777765 45666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 327 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
.+.+ .|+...=...+.++.+...-..+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6664 56766666777777776444566777766654
No 451
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.78 E-value=2.8e+02 Score=24.63 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHcC
Q 007530 382 ILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m 399 (600)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 455555555555555554
No 452
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=30.39 E-value=18 Score=25.59 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=16.9
Q ss_pred CcEEEecCCcccccccccccCC
Q 007530 576 RETIVRDLNRFHHFTNGSCSCW 597 (600)
Q Consensus 576 ~~~~~~d~~~~h~~~~g~csc~ 597 (600)
+.|=+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4567889999999999987643
No 453
>PRK10941 hypothetical protein; Provisional
Probab=30.39 E-value=4.9e+02 Score=24.85 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
.+.+-.+|.+.++++.|+...+.+..- .|+. .-+.--.-.|.+.|.+..|..=++..++...-.|+.......+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 344445566666666666666666652 3432 22333333455666666666655555554444444444444333
No 454
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.13 E-value=2.8e+02 Score=21.97 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=11.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 007530 207 MVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m 227 (600)
++..|...+++++|.+-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 444455555555555555544
No 455
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.73 E-value=7.9e+02 Score=27.82 Aligned_cols=176 Identities=12% Similarity=0.095 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 007530 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293 (600)
Q Consensus 214 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 293 (600)
+.++++.+.+.+.-.--| .++|..+.+.|-.+-|..+.+ |..+ -......||+++.|.+.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVk---------D~~t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVK---------DERT---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeec---------Ccch---heeeehhcCCHHHHHHH
Confidence 456777766655433222 123333445555555544422 1111 22345678999999888
Q ss_pred HhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 007530 294 FSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV 373 (600)
Q Consensus 294 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 373 (600)
-..+- |...|..|...-..+|+.+-|...|++.+. |..|--.|.-.|+.++-.++-..+.. .-|.
T Consensus 666 akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r~D~ 730 (1202)
T KOG0292|consen 666 AKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----RNDA 730 (1202)
T ss_pred HHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----hhhh
Confidence 76654 566899999999999999999988887654 33333345667888887766655532 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
.. ....-.-.|+.++-.++++..+..|- .|. ....+|.-+.|+++.++.-.
T Consensus 731 ~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 731 TG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 11 11111236888888888887763332 121 12357888888888888765
No 456
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=29.50 E-value=5.7e+02 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 335 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
||..+...++++.+...........++.+.
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L 257 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALL 257 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHh
Confidence 788888888888777666665555455554
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.94 E-value=2.2e+02 Score=24.90 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 184 (600)
.-.|.++++.+.+.++..+..|----++.+.+.|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444444444443333333222334444444
No 458
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.83 E-value=1e+03 Score=28.01 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCHHHH----HHHHHcCCCCCC-HHHHHHHHHHHHHcC
Q 007530 378 CMIDILGRAGLIHEA----YDLILNMPFDAT-ASMWGSLLASCRNYR 419 (600)
Q Consensus 378 ~li~~~~~~g~~~~A----~~~~~~m~~~p~-~~~~~~ll~~~~~~~ 419 (600)
-|+..+++.|-++.| .++.+...+..| ..++..+...|....
T Consensus 1240 ELv~llaqagLyd~a~~~~lkl~rgfsl~~~l~piFE~la~kc~~a~ 1286 (1480)
T KOG4521|consen 1240 ELVLLLAQAGLYDSAQFKPLKLNRGFSLLVDLDPIFEILAQKCLDAH 1286 (1480)
T ss_pred HHHHHHHHccccccccccccchhhcccchhhHHHHHHHHHHhhhhcc
Confidence 477788888888888 666665544433 356777777776654
No 459
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.74 E-value=5.5e+02 Score=24.91 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=13.1
Q ss_pred HHHHHHHHccC-C-CCCHHHHHHHHHH
Q 007530 186 ISDASRVFESM-P-ERNEVTWSSMVAG 210 (600)
Q Consensus 186 ~~~A~~~f~~m-~-~~d~~~~~~li~~ 210 (600)
++.+.++...+ + +.+...|..++..
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~ 82 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSN 82 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 45566666665 2 3555666655543
No 460
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.12 E-value=2.1e+02 Score=21.94 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCh
Q 007530 52 GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115 (600)
Q Consensus 52 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 115 (600)
...+++.++..|+-.+. ..-...+...+.+.+.++++.++.+...+|..+..++-..|..
T Consensus 22 ~~~v~~~L~~~gvlt~~----~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILTDS----MAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 44567777776643221 1122223445678888888888888888888888888665543
No 461
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.00 E-value=7.2e+02 Score=26.06 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=16.0
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHcc
Q 007530 62 MGLNNDTLTSNILINFYSKCGLISGARKVFDE 93 (600)
Q Consensus 62 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 93 (600)
.|+.-+..+...++... .|++..|...++.
T Consensus 192 egi~i~~eal~~Ia~~s--~GdlR~aln~Le~ 221 (472)
T PRK14962 192 EGIEIDREALSFIAKRA--SGGLRDALTMLEQ 221 (472)
T ss_pred cCCCCCHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 35555555555555432 3566666665554
No 462
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=27.60 E-value=2e+02 Score=22.79 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=40.3
Q ss_pred HhhHHHHHHHHHHccccC--CCCCcEEEEecccccCCchhHHHHHhhhcCCcEEEecC
Q 007530 528 LLIHHSEKLALTFGLMCL--CPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583 (600)
Q Consensus 528 ~l~~h~~~~a~~~~~~~~--~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~~~d~ 583 (600)
.|.-|.|.-++ -.++. .+|..+-|.--|+-|..|.-+++-++.-.+-.|+-++.
T Consensus 46 slaTHTE~ri~--~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~ 101 (118)
T PF14427_consen 46 SLATHTEARIT--RDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWP 101 (118)
T ss_pred hhhhhhHhHHH--hhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecC
Confidence 45678876655 23322 23777777788999999999999999988888877663
No 463
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=27.45 E-value=3e+02 Score=28.73 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--------CcchHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--------NAGNHL 443 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~ 443 (600)
++..|-..+.-|...++++.|.++.+-.+ +...|.+|......+.+...++.++..+.+.+.- -+..-.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456666777888889999998887754 6678888888888888888888877777664421 111222
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 007530 444 LLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 444 ~l~~~~~~~g~~~~a~~~~~ 463 (600)
-++....-.|+..+|.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 33444445567777766653
No 464
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.14 E-value=2.3e+02 Score=30.44 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCh
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGMG--LNNDTLTSNILINFYSKCGLI 84 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~ 84 (600)
+++.+|...|++-.+.+++..++... -..=...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 67777777777777777777666442 112234456666666666654
No 465
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.10 E-value=1.2e+02 Score=27.99 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=49.4
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
....+|.+.+.+++.+++++-|+....|..++..-.++|+.+.|.+.+++..+-+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3457889999999999999999999999999999999999999999998887654
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.07 E-value=2.4e+02 Score=26.42 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=10.3
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 007530 344 LSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 344 l~a~~~~g~~~~a~~~~~~~~ 364 (600)
..-|.+.|++++|.++|+.+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555555443
No 467
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.76 E-value=6e+02 Score=24.67 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=45.5
Q ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----hHHHHHHHHHHHHhCC
Q 007530 203 TWSSMVAGFVQ---NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA-----LIQGKQVHAVLCKTGF 267 (600)
Q Consensus 203 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~ 267 (600)
.+.-+|+++.+ -.+++.|+-.+.+|.+.|-.|....-..++.|+...|. +..|...++.....|+
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34445666544 57899999999999999999988888888888777663 3344444444444554
No 468
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.65 E-value=1.5e+02 Score=28.67 Aligned_cols=31 Identities=10% Similarity=-0.013 Sum_probs=22.3
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+..+++++.+..++.+.++++|++|..|...
T Consensus 152 ~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 152 LFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred hhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4456777778888888888888877766543
No 469
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.49 E-value=3e+02 Score=21.07 Aligned_cols=53 Identities=8% Similarity=0.120 Sum_probs=27.1
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 313 SRHARSVEVMILFEKMQQ----AGLHPN----EQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~----~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
.+.|++.+|++.+.+..+ .+..+. ......+.......|..++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777555554433 222111 12222233445556777777777776654
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.16 E-value=2.4e+02 Score=24.68 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=32.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 007530 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390 (600)
Q Consensus 328 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 390 (600)
+...|++++..-. .++......+..-.|.++++.+.+ .+..++..|.---++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445665554433 333344444555667777777743 344444444334456677777654
No 471
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.89 E-value=7.3e+02 Score=25.40 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC---CCcCHhHHHHHH
Q 007530 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVVLWNTMI 309 (600)
Q Consensus 233 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li 309 (600)
..+......++..+ .|+...+..+++.+...+...+. +...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444444444432 67777777777766543211111 1111222111 112223344455
Q ss_pred HHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 310 SGFSR---HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351 (600)
Q Consensus 310 ~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 351 (600)
+++.+ .++.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 4789999999999999998887665555555544433
No 472
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.78 E-value=5.8e+02 Score=24.17 Aligned_cols=159 Identities=14% Similarity=0.038 Sum_probs=75.9
Q ss_pred HcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHccCchH-HHH
Q 007530 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA----QVLGLEYNQFTISSVICACAGLAALI-QGK 256 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~ 256 (600)
+.+++++|.+++.+ =...+.+.|+...|-++-.-| .+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45566666665432 123345555555554444333 23455666655555555444333211 122
Q ss_pred HHHHHHHH---hCC--CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007530 257 QVHAVLCK---TGF--GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331 (600)
Q Consensus 257 ~~~~~~~~---~~~--~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 331 (600)
.+...+++ .+- .-++.....+...|.+.|++.+|+.-|-.-..++...+-.++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 33333332 222 236778888889999999999998887665544444432233222223332222
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 007530 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 332 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 366 (600)
|...-..++ -|.-.+++..|...++...+.
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222333 344567888888887776654
No 473
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.52 E-value=3.2e+02 Score=23.10 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=29.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 007530 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389 (600)
Q Consensus 325 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 389 (600)
...+.+.|++++..=. .++......+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 9 ~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 9 IERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 3344455555443221 2444445555556667777766432 3222333322234566666654
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.15 E-value=2.7e+02 Score=26.10 Aligned_cols=55 Identities=15% Similarity=-0.080 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHh----C-CCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 007530 139 SSVLCACAAKRDVFECKQLHVFALKA----A-MDRNVFVGTALLDVYAKCGLISDASRVF 193 (600)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~~~~A~~~f 193 (600)
..+..-+...|+++.|.++++.+... | ..+...+...+..++.+.|+.++...+-
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34555566677777777777666432 2 2334455666777777777777666543
No 475
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=24.47 E-value=6.8e+02 Score=24.56 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007530 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281 (600)
Q Consensus 218 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y 281 (600)
+.-+.++++..+.+ +-+.......|..+.+....+...+-++.++... +.+..+|...++..
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 44556666655552 2344445556666666666666666666666653 33455555555443
No 476
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=24.40 E-value=1.5e+02 Score=21.61 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=27.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 351 (600)
...|+.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346888889999999988888888777666665554433
No 477
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.36 E-value=6.5e+02 Score=24.28 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
.++..+-+.+++....+.+..+. .+..-...+......|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45555666666666555555552 344455667778889999999999888765
No 478
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.09 E-value=1.8e+02 Score=23.23 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=28.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCCh
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~ 151 (600)
++..+...+..-.|-++++.+.+.+ ...+..|....|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~-~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKG-PSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhCCCE
Confidence 4455555555566777777777666 555666666666666555543
No 479
>PRK05414 urocanate hydratase; Provisional
Probab=23.59 E-value=67 Score=33.11 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHHcC-CH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV----GTALLDVYAKCG-LI 186 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~y~~~g-~~ 186 (600)
..+.++|++..++.++.+ -+.+ .|-+..+..++.++++.|+.||..+ ....++.|.=.| .+
T Consensus 216 ~~~Ldeal~~~~~a~~~~-~~~S-------------Ig~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ 281 (556)
T PRK05414 216 ADDLDEALALAEEAKAAG-EPLS-------------IGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTL 281 (556)
T ss_pred cCCHHHHHHHHHHHHHcC-CceE-------------EEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCH
Confidence 357789999998888886 3322 2334457788999999999888764 223344777777 57
Q ss_pred HHHHHHHc
Q 007530 187 SDASRVFE 194 (600)
Q Consensus 187 ~~A~~~f~ 194 (600)
+++.++..
T Consensus 282 ee~~~lr~ 289 (556)
T PRK05414 282 EEAAELRA 289 (556)
T ss_pred HHHHHHHH
Confidence 77776644
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.51 E-value=2.6e+02 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=25.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 410 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
..+..|.+.|.+++|.+++++..+ +|++...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 355678999999999999999998 7776544
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.51 E-value=1.9e+02 Score=23.09 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 353 (600)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444455555566777777777766666666666666666665543
No 482
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.11 E-value=1.7e+02 Score=21.31 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=28.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 250 (600)
....|+.+.+.+++++....|..|.......+..+....|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456888888899988888888887777666666655544
No 483
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.00 E-value=6.6e+02 Score=23.91 Aligned_cols=203 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred cCCchhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCC-----ChhHHH
Q 007530 46 ERAPVRGKVCHAKIIGMGLN-NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG-----REQEAV 119 (600)
Q Consensus 46 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~ 119 (600)
.+++..+...+......+.. .................+...|.+.|....+.+...--..+..+...| +..+|.
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~ 133 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKAL 133 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHH
Q ss_pred HHHHHHHHcCCCCCC---hhhHHHHHHH----HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cCCHHH
Q 007530 120 ALFINMLREGKTPYS---EFTVSSVLCA----CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----CGLISD 188 (600)
Q Consensus 120 ~~~~~m~~~g~~~p~---~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~ 188 (600)
..|+...+.| .++. .......-.. .....+...|...+..+-..+ +......|..+|.. ..+.++
T Consensus 134 ~~~~~Aa~~g-~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 134 KYYEKAAKLG-NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHcC-ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHH
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHhCC---------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 189 ASRVFESMPERNEVTWSSMVAGFVQNE---------------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 189 A~~~f~~m~~~d~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
|...|....+.+...-...+..+...| +...|...+......|..........+-......+..
T Consensus 210 A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (292)
T COG0790 210 AFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGLSARGSG 288 (292)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhCcCCC
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.91 E-value=2.7e+02 Score=26.93 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEAL 221 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~ 221 (600)
|+..|..++.+|.-.|+...+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH
Confidence 5556666666666666554444
No 485
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.82 E-value=6.2e+02 Score=23.53 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=77.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH-IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 386 (600)
++..+-+.|+++++...++++...+...+..--+.+-.+|-. .|....+++++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455667788889999999888887666665444444444422 23444555555554332211111 1222233222211
Q ss_pred ------CCHHHHHHHHHcC--CC--CCCHHH-HHHHHHHH----HH-------cCChHHHHHHHHHHhc-----CCCCCc
Q 007530 387 ------GLIHEAYDLILNM--PF--DATASM-WGSLLASC----RN-------YRNLELAEIAAKQLFG-----MEPDNA 439 (600)
Q Consensus 387 ------g~~~~A~~~~~~m--~~--~p~~~~-~~~ll~~~----~~-------~~~~~~a~~~~~~~~~-----~~p~~~ 439 (600)
..-.+..++++.. |. .+...+ |.-+-+=| +. ..-.+.|.+.++++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123444455443 11 111222 11111111 11 1124667777777664 678777
Q ss_pred chHHHHHH----HHHhcCChHHHHHHHHHhhhCC
Q 007530 440 GNHLLLSN----IYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 440 ~~~~~l~~----~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.......+ .|.-.|+.++|.++-+...+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 54332222 2456899999998877765543
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.65 E-value=4.4e+02 Score=21.71 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=29.6
Q ss_pred HHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 424 AEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 424 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
...+|..+.. +....+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665 444556677888888889999999988875
No 487
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.62 E-value=9.1e+02 Score=25.34 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=24.1
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 246 (600)
...++++.|+.++.+|...|..|....-..+..++
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~ 288 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLV 288 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45688888888888888888777665444444333
No 488
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=22.47 E-value=1.4e+02 Score=28.79 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 385 RAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
+.|+.++|..+|+.. ...|+ +.....+......++++-+|.+.+-+++.+.|.+...
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 456666666666543 33332 3344444444445666777777777777777765543
No 489
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.75 E-value=4.5e+02 Score=21.54 Aligned_cols=42 Identities=5% Similarity=0.000 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHH
Q 007530 219 EALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 219 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
.+.++|..|...|+--. ..-|..-...+...|++++|..++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666554332 2233444444444555555555544
No 490
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=3.4e+02 Score=26.01 Aligned_cols=129 Identities=9% Similarity=0.035 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCH
Q 007530 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-------PFDATA 405 (600)
Q Consensus 333 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~ 405 (600)
++.|..-++.++.- +....++--+-.++..+..|-.-..+.+..+.+-|++.++.+.+.++.++. +.+-|.
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 44555566666532 111222222223333333444445677888899999999999998887654 333333
Q ss_pred HHHHHHHH---HHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHH-HHhcCChHHHHHHHHHh
Q 007530 406 SMWGSLLA---SCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNI-YAANRRWEEVARARKLI 465 (600)
Q Consensus 406 ~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~-~~~~g~~~~a~~~~~~m 465 (600)
+-+-+. .|....-+++.++..+.+++..-+ .-.-|-..-.+ +....++.+|..++-..
T Consensus 155 --~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 155 --FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred --HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 323232 233333355556666666664322 11122222222 33445666666665444
No 491
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.70 E-value=3.7e+02 Score=20.53 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCH
Q 007530 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~ 217 (600)
..-+.+++.++++.++.+...+|..+..++-..+..
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 445678888888888888888888888887665543
No 492
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.46 E-value=6e+02 Score=22.84 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=54.3
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC------
Q 007530 194 ESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF------ 267 (600)
Q Consensus 194 ~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~------ 267 (600)
++-.++-.+.|.....+-++.-..+++-+.|- ...=.+++..|.+.-++.+++++++.+.+..+
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33333444555555555555544444333221 11224566778888889999998888876432
Q ss_pred --------CCchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 268 --------GSNMFAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 268 --------~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
.+--.+-|.....+.++|.++.|..++++
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22334556666677777777777777663
No 493
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.40 E-value=1.6e+02 Score=23.81 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 007530 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352 (600)
Q Consensus 306 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 352 (600)
.+++..+...+.+-.|.++++.|.+.+...+..|.-..|..+...|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34566666666677788888888887777777776666666666554
No 494
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=21.32 E-value=57 Score=16.97 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=7.1
Q ss_pred CchhHHHHHh
Q 007530 562 DCHSFMKFAS 571 (600)
Q Consensus 562 ~~~~a~~~~~ 571 (600)
..|+++|+++
T Consensus 11 glhe~ikli~ 20 (23)
T PF08225_consen 11 GLHEVIKLIN 20 (23)
T ss_pred HHHHHHHHHh
Confidence 4677777776
No 495
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.22 E-value=1.2e+02 Score=31.00 Aligned_cols=204 Identities=11% Similarity=0.058 Sum_probs=102.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 007530 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSH-----------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-----------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 385 (600)
++++|.++.+.+ |....|...+.-..+ .+.+++-+++++.+.+. | .+| ....-|+.|.|
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~-g-~ad--~lp~TIDSyTR 98 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEE-G-GAD--FLPSTIDAYTR 98 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHc-c-CCC--ccceeeecccc
Confidence 577777776654 343444444443332 24577778888877543 2 233 34445788888
Q ss_pred cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 386 AGLIHEAYDLILNMPFDATASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 386 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
.+++++|..-+++-. + +=.++|++|=. +--++...++.+.. -.|-. .+.|. .++..+++.
T Consensus 99 ~n~y~~A~~~l~~s~-~----~~~s~LNGfP~VnhGv~~~R~l~~~v--~~PvQ-----------vRHGt-pDarlL~e~ 159 (480)
T TIGR01503 99 QNRYDEAAVGIKESI-K----AGRSLLNGFPGVNHGVKGCRKVLEAV--NLPLQ-----------IRHGT-PDARLLAEI 159 (480)
T ss_pred cccHHHHHHHHHhhh-h----cCcccccCCCcccccHHHHHHHHHhC--CCCee-----------ccCCC-CcHHHHHHH
Confidence 888888888877541 0 00123333211 11233334443332 11211 12222 235555666
Q ss_pred hhhCCCccCCc--eEEEEEcC-cccCcchHHHHHHHHHHHHHHHHCCCccCCccccc---ccchhHHhhHhhHHHHHHHH
Q 007530 465 IRDSEVKKEKS--KSWVEIKG-KRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLH---DVEDSRKQELLIHHSEKLAL 538 (600)
Q Consensus 465 m~~~~~~~~~~--~~~~~i~~-~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~---~~~~~~~~~~l~~h~~~~a~ 538 (600)
+...|+....+ +||..=.+ ...-.+.-+-|+...++.....+.|...+...+-- .+-+......+..---.+|.
T Consensus 160 ~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvPPsisiav~ilE~Lla~ 239 (480)
T TIGR01503 160 ILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPSISNAIGIIEGLLAA 239 (480)
T ss_pred HHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccChHHHHHHHHHHHHHHH
Confidence 66666654443 55533222 22223344556666678777788888878666532 12122222222333334455
Q ss_pred HHccccCCCCC
Q 007530 539 TFGLMCLCPGV 549 (600)
Q Consensus 539 ~~~~~~~~~~~ 549 (600)
..|+.+...++
T Consensus 240 eqGVksisvgy 250 (480)
T TIGR01503 240 EQGVKNITVGY 250 (480)
T ss_pred HcCCeEEEecc
Confidence 55665544433
No 496
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.22 E-value=2.5e+02 Score=26.68 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=44.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 410 SLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 410 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.+=+++...++.+.|....++.+.++|+++.-..--+-+|.+.|...-|.+-+....+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3445566778888888888888888888876666777788888888888887766543
No 497
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.15 E-value=4e+02 Score=27.16 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHccCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 172 VGTALLDVYAKCGLISDASRVFESMPE-----------RNEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 172 ~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
..-.|++.++-.||+..|.++++.+.- -.+.++.-+.-+|.-.+++.+|++.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888776642 245567777788888888888888887764
No 498
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.15 E-value=8.7e+02 Score=24.56 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=17.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
.+.+.+++..|.++|+++......|+..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~ 166 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNH 166 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhh
Confidence 4556677777777777777664444433
No 499
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.12 E-value=5e+02 Score=28.13 Aligned_cols=72 Identities=7% Similarity=0.046 Sum_probs=42.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHHHhcCCCccHHHHHH
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAG--LHPNEQTYISVLSACSHIGMVE------KGKSYFDLMVKQHNVLPNVFHYSC 378 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~~~~~~~~~p~~~~~~~ 378 (600)
+++.+|..+|++..+.++++...... -+.=...|+..|+...+.|.++ .+.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 67777888888888888877776542 1122335666667777766543 233333332 34456666666
Q ss_pred HHHH
Q 007530 379 MIDI 382 (600)
Q Consensus 379 li~~ 382 (600)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 6543
No 500
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=20.81 E-value=49 Score=25.51 Aligned_cols=35 Identities=9% Similarity=0.171 Sum_probs=28.0
Q ss_pred cccCCchhHHHHHhhhcCCcEEEecCCccccccccc
Q 007530 558 RICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGS 593 (600)
Q Consensus 558 ~~c~~~~~a~~~~~~~~~~~~~~~d~~~~h~~~~g~ 593 (600)
.-|.+=.+|..+-..+....|+--.+++ |+|+||.
T Consensus 51 g~~~tR~eAv~~gq~Ll~~gii~HV~~~-h~F~D~~ 85 (93)
T cd04440 51 GDCRTREEAVILGVGLCNNGFMHHVLEK-SEFKDEP 85 (93)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEecCCC-cCcCCcC
Confidence 4455667899999999999998887655 7999985
Done!