Query 007530
Match_columns 600
No_of_seqs 722 out of 4253
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.8E-39 9.6E-44 348.9 40.3 430 31-469 82-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-36 9E-41 325.6 36.8 414 29-451 113-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.8E-33 254.7 23.4 183 202-385 27-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.9E-26 1.7E-30 231.4 41.3 372 43-454 9-388 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-25 7.7E-30 226.6 42.5 353 106-468 6-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 3.9E-28 1.3E-32 252.0 20.9 184 100-284 27-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 2.3E-22 7.8E-27 208.5 35.4 325 98-451 25-375 (450)
8 2gw1_A Mitochondrial precursor 99.9 2.4E-22 8.3E-27 211.9 33.6 427 34-469 7-479 (514)
9 2gw1_A Mitochondrial precursor 99.9 2.2E-22 7.7E-27 212.2 31.4 409 31-445 37-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1E-20 3.5E-25 196.1 35.0 346 65-438 23-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.6E-20 5.4E-25 199.3 33.6 423 33-469 25-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 4.4E-18 1.5E-22 170.0 36.3 312 99-451 3-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 6.6E-18 2.2E-22 168.8 34.4 307 134-469 2-336 (359)
14 3fp2_A TPR repeat-containing p 99.8 1.3E-18 4.6E-23 184.4 28.3 402 30-443 56-500 (537)
15 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.8E-23 172.8 21.5 346 80-464 15-368 (449)
16 3hym_B Cell division cycle pro 99.8 1.5E-17 5.1E-22 164.2 27.9 287 132-456 19-322 (330)
17 2xm6_A Protein corresponding t 99.8 6.5E-16 2.2E-20 161.8 39.4 365 66-450 37-451 (490)
18 2ooe_A Cleavage stimulation fa 99.8 6.6E-16 2.3E-20 163.4 39.3 391 67-467 12-491 (530)
19 2ooe_A Cleavage stimulation fa 99.8 2E-15 6.9E-20 159.7 38.0 401 30-437 10-495 (530)
20 3hym_B Cell division cycle pro 99.8 5.3E-16 1.8E-20 153.0 31.4 287 97-421 20-321 (330)
21 2xm6_A Protein corresponding t 99.8 7E-15 2.4E-19 153.9 41.4 352 96-469 36-433 (490)
22 1fch_A Peroxisomal targeting s 99.8 5.9E-17 2E-21 162.8 23.0 277 184-464 39-355 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 2.2E-14 7.6E-19 157.8 43.3 382 32-460 984-1376(1630)
24 1fch_A Peroxisomal targeting s 99.8 1.5E-16 5E-21 159.9 24.7 229 99-364 64-312 (368)
25 1b89_A Protein (clathrin heavy 99.8 2.8E-18 9.4E-23 170.0 11.4 258 182-472 15-274 (449)
26 3mkr_A Coatomer subunit epsilo 99.7 2.7E-15 9.1E-20 145.2 31.1 270 179-462 8-288 (291)
27 4eqf_A PEX5-related protein; a 99.7 1.7E-16 5.9E-21 159.3 22.4 261 200-464 64-352 (365)
28 4eqf_A PEX5-related protein; a 99.7 2.8E-16 9.5E-21 157.8 20.8 231 98-365 64-309 (365)
29 4g1t_A Interferon-induced prot 99.7 3.3E-15 1.1E-19 155.5 29.7 385 68-478 51-469 (472)
30 1xi4_A Clathrin heavy chain; a 99.7 2.6E-13 8.9E-18 149.5 43.4 365 51-463 966-1340(1630)
31 3cv0_A Peroxisome targeting si 99.7 7.5E-16 2.6E-20 151.7 20.6 273 170-465 21-312 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 2.2E-15 7.4E-20 145.8 21.9 247 208-469 6-265 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.7 3.9E-17 1.3E-21 174.1 9.7 151 166-316 123-286 (1134)
34 4g1t_A Interferon-induced prot 99.7 2.1E-14 7E-19 149.5 28.8 385 29-446 47-471 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3.7E-17 1.3E-21 174.3 7.5 133 64-197 123-263 (1134)
36 3cv0_A Peroxisome targeting si 99.7 1.3E-14 4.5E-19 142.7 24.4 262 32-298 20-313 (327)
37 3uq3_A Heat shock protein STI1 99.6 1.7E-13 5.8E-18 129.7 22.3 228 201-468 5-236 (258)
38 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4.2E-18 130.7 19.9 233 170-446 5-254 (258)
39 2pl2_A Hypothetical conserved 99.6 1.8E-13 6E-18 126.3 19.3 195 268-466 2-212 (217)
40 3e4b_A ALGK; tetratricopeptide 99.6 5E-13 1.7E-17 137.9 23.9 183 39-231 9-209 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.5E-13 1.2E-17 128.9 19.9 241 213-462 17-269 (275)
42 2pl2_A Hypothetical conserved 99.5 8.5E-13 2.9E-17 121.7 19.5 195 97-297 3-211 (217)
43 3u4t_A TPR repeat-containing p 99.5 8.7E-13 3E-17 126.1 19.8 254 171-452 4-268 (272)
44 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5.1E-17 124.6 20.4 241 111-360 17-269 (275)
45 2ho1_A Type 4 fimbrial biogene 99.5 4.3E-12 1.5E-16 119.7 22.3 197 271-469 37-239 (252)
46 2ho1_A Type 4 fimbrial biogene 99.5 8.7E-12 3E-16 117.6 23.7 207 201-442 37-246 (252)
47 2vq2_A PILW, putative fimbrial 99.5 6E-12 2E-16 116.2 22.0 197 270-468 7-211 (225)
48 2h6f_A Protein farnesyltransfe 99.5 6.7E-12 2.3E-16 125.6 23.8 246 200-451 96-365 (382)
49 3e4b_A ALGK; tetratricopeptide 99.5 2.8E-12 9.5E-17 132.2 21.1 342 105-469 9-388 (452)
50 1ouv_A Conserved hypothetical 99.5 2E-11 6.9E-16 116.8 25.7 225 200-437 5-254 (273)
51 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-12 5.5E-17 121.8 17.2 212 201-448 23-236 (243)
52 3u4t_A TPR repeat-containing p 99.5 1.6E-11 5.3E-16 117.3 24.0 229 134-366 2-250 (272)
53 2vq2_A PILW, putative fimbrial 99.4 1.5E-11 5.2E-16 113.4 23.0 211 200-445 7-222 (225)
54 1ouv_A Conserved hypothetical 99.4 3.3E-11 1.1E-15 115.3 25.9 223 235-469 5-252 (273)
55 3sf4_A G-protein-signaling mod 99.4 3.7E-12 1.3E-16 129.2 20.1 195 273-467 89-335 (406)
56 4a1s_A PINS, partner of inscut 99.4 3.1E-12 1.1E-16 130.3 19.2 197 272-468 127-372 (411)
57 2q7f_A YRRB protein; TPR, prot 99.4 3E-12 1E-16 119.9 17.4 197 270-469 22-223 (243)
58 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4E-14 116.7 39.1 78 66-143 64-147 (679)
59 3ro2_A PINS homolog, G-protein 99.4 3.6E-12 1.2E-16 125.3 18.0 260 208-468 12-332 (338)
60 2h6f_A Protein farnesyltransfe 99.4 2.4E-11 8.3E-16 121.5 24.0 228 237-469 98-349 (382)
61 3sf4_A G-protein-signaling mod 99.4 9.9E-12 3.4E-16 126.1 21.6 291 138-456 12-364 (406)
62 4e6h_A MRNA 3'-END-processing 99.4 8.3E-10 2.9E-14 117.8 35.1 404 29-439 62-575 (679)
63 4a1s_A PINS, partner of inscut 99.4 1.2E-11 4E-16 126.0 18.8 134 304-437 225-375 (411)
64 3vtx_A MAMA; tetratricopeptide 99.4 5.3E-11 1.8E-15 106.3 20.9 166 301-469 4-171 (184)
65 4abn_A Tetratricopeptide repea 99.4 5.3E-12 1.8E-16 131.0 15.6 193 269-465 100-318 (474)
66 3ro2_A PINS homolog, G-protein 99.4 2.1E-11 7.1E-16 119.9 19.0 134 304-437 185-335 (338)
67 2ond_A Cleavage stimulation fa 99.3 6.2E-10 2.1E-14 108.5 26.4 218 218-439 33-275 (308)
68 3nf1_A KLC 1, kinesin light ch 99.3 1.1E-11 3.6E-16 120.8 13.6 242 201-467 27-306 (311)
69 2ond_A Cleavage stimulation fa 99.3 4.8E-10 1.6E-14 109.3 24.0 214 116-367 33-271 (308)
70 3vtx_A MAMA; tetratricopeptide 99.3 1.4E-10 4.6E-15 103.6 18.3 168 269-439 3-175 (184)
71 3ulq_A Response regulator aspa 99.3 2.1E-10 7E-15 115.7 21.3 158 207-364 109-291 (383)
72 3ulq_A Response regulator aspa 99.2 3.2E-10 1.1E-14 114.3 19.6 222 43-264 22-292 (383)
73 4gyw_A UDP-N-acetylglucosamine 99.2 1.9E-10 6.5E-15 124.3 18.7 162 301-467 8-173 (723)
74 3as5_A MAMA; tetratricopeptide 99.2 4.3E-10 1.5E-14 99.9 17.7 161 272-467 9-172 (186)
75 1hz4_A MALT regulatory protein 99.2 7.6E-09 2.6E-13 103.7 28.6 258 210-467 23-321 (373)
76 4i17_A Hypothetical protein; T 99.2 8E-10 2.7E-14 102.4 18.8 151 302-455 7-169 (228)
77 4abn_A Tetratricopeptide repea 99.2 4.4E-10 1.5E-14 116.5 18.5 210 115-364 84-319 (474)
78 3nf1_A KLC 1, kinesin light ch 99.2 9E-11 3.1E-15 114.1 12.4 129 99-228 27-180 (311)
79 3as5_A MAMA; tetratricopeptide 99.2 1.6E-09 5.5E-14 96.1 18.9 159 236-398 8-169 (186)
80 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.8E-14 101.4 18.2 204 234-449 5-224 (228)
81 3q15_A PSP28, response regulat 99.2 4.9E-10 1.7E-14 112.7 16.6 163 303-466 183-363 (378)
82 3q15_A PSP28, response regulat 99.1 1.6E-08 5.4E-13 101.6 26.4 226 209-434 109-365 (378)
83 1hz4_A MALT regulatory protein 99.1 2.3E-08 7.9E-13 100.1 27.4 256 107-364 22-320 (373)
84 3edt_B KLC 2, kinesin light ch 99.1 2.7E-09 9.2E-14 101.8 16.2 33 435-467 248-280 (283)
85 1qqe_A Vesicular transport pro 99.0 6.6E-09 2.3E-13 100.3 18.2 217 185-438 32-273 (292)
86 3qky_A Outer membrane assembly 99.0 2.3E-08 7.9E-13 94.6 20.8 205 270-506 14-247 (261)
87 4gyw_A UDP-N-acetylglucosamine 99.0 9.6E-09 3.3E-13 111.0 18.2 157 68-227 9-171 (723)
88 1qqe_A Vesicular transport pro 99.0 9.7E-09 3.3E-13 99.1 16.1 201 251-466 32-267 (292)
89 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.7E-12 90.4 20.3 237 182-440 25-288 (310)
90 3edt_B KLC 2, kinesin light ch 98.9 1.4E-08 4.9E-13 96.7 14.5 130 135-264 43-197 (283)
91 2uy1_A Cleavage stimulation fa 98.9 2.3E-06 7.8E-11 88.6 31.1 219 200-432 171-411 (493)
92 3qky_A Outer membrane assembly 98.9 4.5E-08 1.5E-12 92.6 16.6 200 234-455 13-248 (261)
93 3mv2_B Coatomer subunit epsilo 98.9 2.3E-07 7.8E-12 88.1 21.0 239 209-469 21-283 (310)
94 2fo7_A Synthetic consensus TPR 98.9 5.4E-08 1.8E-12 80.9 15.0 129 304-467 3-131 (136)
95 2fo7_A Synthetic consensus TPR 98.9 8.3E-08 2.8E-12 79.7 16.0 124 273-399 3-129 (136)
96 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.8E-07 6.1E-12 86.3 19.5 180 272-470 5-215 (225)
97 4ga2_A E3 SUMO-protein ligase 98.8 6E-09 2E-13 89.4 7.4 138 313-454 8-149 (150)
98 2pzi_A Probable serine/threoni 98.8 2.4E-08 8E-13 108.3 13.5 169 282-454 402-583 (681)
99 3qou_A Protein YBBN; thioredox 98.8 9.9E-08 3.4E-12 91.6 15.7 174 289-466 104-282 (287)
100 4ga2_A E3 SUMO-protein ligase 98.7 3.3E-08 1.1E-12 84.7 9.2 122 343-467 3-128 (150)
101 2ifu_A Gamma-SNAP; membrane fu 98.7 5.7E-07 1.9E-11 87.3 18.9 221 213-461 3-254 (307)
102 3rjv_A Putative SEL1 repeat pr 98.7 8.9E-07 3E-11 80.7 18.7 161 300-469 16-198 (212)
103 2vgx_A Chaperone SYCD; alterna 98.7 8.2E-08 2.8E-12 82.0 10.5 102 368-469 15-119 (148)
104 2pzi_A Probable serine/threoni 98.7 4.7E-07 1.6E-11 98.1 19.1 189 247-441 402-609 (681)
105 2vsy_A XCC0866; transferase, g 98.7 1.8E-07 6.2E-12 99.4 15.3 160 284-446 2-169 (568)
106 2r5s_A Uncharacterized protein 98.7 2.4E-07 8.4E-12 81.6 13.7 63 404-466 107-171 (176)
107 3gyz_A Chaperone protein IPGC; 98.7 1.3E-07 4.5E-12 80.7 11.3 102 368-469 30-134 (151)
108 2uy1_A Cleavage stimulation fa 98.7 2.5E-06 8.7E-11 88.2 23.2 193 301-508 212-418 (493)
109 3qou_A Protein YBBN; thioredox 98.7 1.5E-06 5E-11 83.4 19.6 162 235-398 116-280 (287)
110 3urz_A Uncharacterized protein 98.7 9.7E-07 3.3E-11 80.1 17.2 129 277-410 60-195 (208)
111 2vsy_A XCC0866; transferase, g 98.7 4.7E-07 1.6E-11 96.2 17.2 147 249-399 2-154 (568)
112 4gco_A Protein STI-1; structur 98.6 1.9E-07 6.6E-12 77.1 11.1 93 375-467 15-109 (126)
113 3urz_A Uncharacterized protein 98.6 7.7E-07 2.6E-11 80.8 15.7 129 306-438 58-190 (208)
114 3u3w_A Transcriptional activat 98.6 2.7E-06 9.4E-11 81.7 19.9 160 307-466 80-264 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 9.3E-07 3.2E-11 80.3 15.4 123 342-469 11-151 (213)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 6.9E-07 2.3E-11 86.7 15.2 25 239-263 79-103 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.9E-06 9.9E-11 77.0 18.2 144 275-438 10-154 (213)
118 2r5s_A Uncharacterized protein 98.6 8.8E-07 3E-11 78.0 14.1 153 172-327 8-169 (176)
119 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-06 5.8E-11 78.8 16.4 159 98-266 17-198 (212)
120 4gco_A Protein STI-1; structur 98.6 8.6E-07 2.9E-11 73.1 12.9 109 338-448 14-124 (126)
121 2xcb_A PCRH, regulatory protei 98.6 9.3E-07 3.2E-11 74.7 13.2 97 372-468 17-115 (142)
122 3dra_A Protein farnesyltransfe 98.6 1.6E-05 5.3E-10 76.2 23.2 220 214-467 46-286 (306)
123 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-06 4.9E-11 83.8 16.2 164 303-466 76-264 (293)
124 3dra_A Protein farnesyltransfe 98.5 6.5E-05 2.2E-09 71.9 27.0 215 111-330 45-286 (306)
125 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.7E-06 5.9E-11 79.5 15.1 183 236-439 4-218 (225)
126 1a17_A Serine/threonine protei 98.5 2E-06 6.8E-11 74.4 14.4 126 339-466 15-144 (166)
127 1na0_A Designed protein CTPR3; 98.5 2.1E-06 7.2E-11 69.9 13.6 114 338-453 10-125 (125)
128 2c2l_A CHIP, carboxy terminus 98.5 5E-07 1.7E-11 86.4 11.1 191 271-468 4-199 (281)
129 3u3w_A Transcriptional activat 98.5 7.6E-06 2.6E-10 78.6 19.1 62 203-264 198-265 (293)
130 2vyi_A SGTA protein; chaperone 98.5 2E-06 6.7E-11 70.8 12.3 115 339-455 14-130 (131)
131 1p5q_A FKBP52, FK506-binding p 98.4 1.9E-06 6.7E-11 84.6 13.3 159 286-466 128-292 (336)
132 2lni_A Stress-induced-phosphop 98.4 2.2E-06 7.6E-11 70.8 11.5 113 340-454 19-133 (133)
133 2e2e_A Formate-dependent nitri 98.4 3.1E-06 1.1E-10 74.4 12.6 118 350-469 23-145 (177)
134 3upv_A Heat shock protein STI1 98.4 2.8E-06 9.6E-11 69.8 10.8 95 374-468 5-101 (126)
135 1wao_1 Serine/threonine protei 98.3 2.7E-06 9.1E-11 87.9 12.6 117 346-464 15-135 (477)
136 3gw4_A Uncharacterized protein 98.3 2.1E-06 7.2E-11 77.1 10.4 149 80-228 4-174 (203)
137 2qfc_A PLCR protein; TPR, HTH, 98.3 1.4E-05 4.7E-10 76.8 16.8 158 102-261 78-262 (293)
138 4f3v_A ESX-1 secretion system 98.3 1.3E-06 4.5E-11 81.7 9.1 134 307-445 107-247 (282)
139 3sz7_A HSC70 cochaperone (SGT) 98.3 8.1E-06 2.8E-10 70.7 13.5 97 372-468 10-108 (164)
140 3gw4_A Uncharacterized protein 98.3 7.8E-06 2.7E-10 73.3 13.4 81 284-364 5-93 (203)
141 2e2e_A Formate-dependent nitri 98.3 8.4E-06 2.9E-10 71.5 13.3 127 313-442 21-152 (177)
142 1a17_A Serine/threonine protei 98.3 9.9E-06 3.4E-10 69.9 13.3 124 101-227 15-143 (166)
143 1elw_A TPR1-domain of HOP; HOP 98.3 1.4E-05 4.7E-10 64.2 13.2 104 339-444 6-111 (118)
144 1hxi_A PEX5, peroxisome target 98.3 2.7E-06 9.3E-11 69.5 8.9 94 376-469 20-115 (121)
145 1elw_A TPR1-domain of HOP; HOP 98.3 1.7E-05 5.7E-10 63.7 13.7 92 375-466 6-99 (118)
146 3q49_B STIP1 homology and U bo 98.3 6.9E-06 2.4E-10 68.4 11.5 97 372-468 8-106 (137)
147 1na0_A Designed protein CTPR3; 98.3 1.5E-05 5E-10 64.7 13.1 97 373-469 9-107 (125)
148 3gyz_A Chaperone protein IPGC; 98.3 7.6E-06 2.6E-10 69.7 11.5 91 100-193 37-127 (151)
149 2kck_A TPR repeat; tetratricop 98.3 4.4E-06 1.5E-10 66.5 9.6 96 374-469 7-107 (112)
150 2lni_A Stress-induced-phosphop 98.3 1.3E-05 4.5E-10 66.0 12.7 100 370-469 13-114 (133)
151 4f3v_A ESX-1 secretion system 98.2 1.9E-05 6.6E-10 73.9 14.9 182 283-469 18-238 (282)
152 2fbn_A 70 kDa peptidylprolyl i 98.2 7.5E-06 2.6E-10 73.5 11.8 170 279-469 12-187 (198)
153 3q7a_A Farnesyltransferase alp 98.2 0.00056 1.9E-08 66.2 25.4 180 102-286 57-257 (349)
154 2c2l_A CHIP, carboxy terminus 98.2 7.8E-06 2.7E-10 78.0 12.1 95 134-229 3-100 (281)
155 2dba_A Smooth muscle cell asso 98.2 2.2E-05 7.4E-10 66.2 13.5 109 338-449 29-143 (148)
156 2dba_A Smooth muscle cell asso 98.2 2E-05 6.8E-10 66.4 13.2 99 371-469 26-129 (148)
157 2vyi_A SGTA protein; chaperone 98.2 1.4E-05 4.7E-10 65.5 11.8 98 372-469 11-110 (131)
158 2vgx_A Chaperone SYCD; alterna 98.2 3.6E-06 1.2E-10 71.6 8.2 103 338-442 22-126 (148)
159 3q7a_A Farnesyltransferase alp 98.2 0.0018 6E-08 62.7 27.4 179 204-388 57-257 (349)
160 2xcb_A PCRH, regulatory protei 98.2 1.3E-05 4.4E-10 67.5 10.9 105 340-446 21-127 (142)
161 3upv_A Heat shock protein STI1 98.2 2.1E-05 7E-10 64.5 11.7 108 340-449 7-122 (126)
162 3sz7_A HSC70 cochaperone (SGT) 98.2 2.4E-05 8.1E-10 67.7 12.6 108 337-446 11-120 (164)
163 3rkv_A Putative peptidylprolyl 98.1 2E-05 6.7E-10 68.0 11.4 64 405-468 63-126 (162)
164 4gcn_A Protein STI-1; structur 98.1 1.4E-05 4.7E-10 65.9 9.5 93 375-467 10-111 (127)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.8E-05 1.3E-09 78.8 14.6 160 286-467 249-414 (457)
166 3q49_B STIP1 homology and U bo 98.1 3.5E-05 1.2E-09 64.0 11.4 100 336-437 8-109 (137)
167 2xev_A YBGF; tetratricopeptide 98.1 1.7E-05 5.8E-10 65.2 9.3 89 380-468 9-105 (129)
168 2fbn_A 70 kDa peptidylprolyl i 98.1 4.4E-06 1.5E-10 75.0 6.0 120 73-195 9-147 (198)
169 1elr_A TPR2A-domain of HOP; HO 98.0 3.9E-05 1.3E-09 62.8 11.3 95 374-468 5-108 (131)
170 2hr2_A Hypothetical protein; a 98.0 1.6E-05 5.5E-10 67.2 8.7 62 406-467 58-130 (159)
171 3dss_A Geranylgeranyl transfer 98.0 0.001 3.5E-08 64.1 21.8 189 252-445 90-315 (331)
172 1p5q_A FKBP52, FK506-binding p 98.0 4.8E-05 1.6E-09 74.6 12.7 95 98-195 146-255 (336)
173 3k9i_A BH0479 protein; putativ 98.0 5.9E-06 2E-10 67.0 4.6 81 387-467 4-89 (117)
174 2kck_A TPR repeat; tetratricop 98.0 6.5E-05 2.2E-09 59.5 10.8 98 340-439 9-111 (112)
175 3ro3_A PINS homolog, G-protein 97.9 5.7E-05 1.9E-09 64.4 10.8 136 303-467 10-157 (164)
176 1elr_A TPR2A-domain of HOP; HO 97.9 0.0001 3.6E-09 60.1 12.0 113 303-448 5-121 (131)
177 1ihg_A Cyclophilin 40; ppiase 97.9 7E-05 2.4E-09 74.4 12.5 137 303-461 224-363 (370)
178 3dss_A Geranylgeranyl transfer 97.9 0.0016 5.5E-08 62.7 21.5 180 287-469 90-305 (331)
179 4b4t_Q 26S proteasome regulato 97.9 0.00013 4.5E-09 74.1 14.9 162 305-466 58-243 (434)
180 4gcn_A Protein STI-1; structur 97.9 0.00017 5.9E-09 59.1 12.6 60 304-364 10-69 (127)
181 3n71_A Histone lysine methyltr 97.9 0.0001 3.5E-09 75.6 13.2 124 346-469 318-465 (490)
182 4b4t_Q 26S proteasome regulato 97.9 0.00023 7.7E-09 72.3 15.6 97 303-399 136-242 (434)
183 2if4_A ATFKBP42; FKBP-like, al 97.8 3.2E-05 1.1E-09 75.9 8.4 147 302-468 179-328 (338)
184 3ro3_A PINS homolog, G-protein 97.8 9.3E-05 3.2E-09 63.0 10.4 95 271-365 9-117 (164)
185 2xev_A YBGF; tetratricopeptide 97.8 0.00022 7.6E-09 58.2 12.3 99 345-443 10-114 (129)
186 1hxi_A PEX5, peroxisome target 97.8 7.9E-05 2.7E-09 60.6 9.3 94 101-197 19-112 (121)
187 2l6j_A TPR repeat-containing p 97.8 1.2E-05 4.1E-10 64.0 3.9 92 372-463 3-102 (111)
188 3rkv_A Putative peptidylprolyl 97.8 8.9E-05 3E-09 63.8 9.5 76 373-448 63-141 (162)
189 2hr2_A Hypothetical protein; a 97.8 8E-05 2.7E-09 62.9 8.6 70 375-444 59-141 (159)
190 1ihg_A Cyclophilin 40; ppiase 97.7 0.0002 6.8E-09 71.0 12.3 114 337-469 223-337 (370)
191 3k9i_A BH0479 protein; putativ 97.7 4.1E-05 1.4E-09 61.9 6.0 92 350-441 3-97 (117)
192 3ma5_A Tetratricopeptide repea 97.7 0.00013 4.3E-09 57.0 8.4 66 403-468 5-70 (100)
193 1dce_A Protein (RAB geranylger 97.7 0.0014 4.7E-08 68.8 18.8 168 287-457 45-244 (567)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00032 1.1E-08 71.9 13.6 65 405-469 317-381 (457)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00014 4.7E-09 71.3 10.2 152 271-439 179-333 (338)
196 1na3_A Designed protein CTPR2; 97.7 0.0002 7E-09 54.2 8.6 81 373-453 9-91 (91)
197 1wao_1 Serine/threonine protei 97.6 0.00019 6.6E-09 73.9 9.7 114 313-429 17-134 (477)
198 2kat_A Uncharacterized protein 97.5 0.00017 5.8E-09 57.8 7.1 77 392-468 4-82 (115)
199 3bee_A Putative YFRE protein; 97.5 0.00051 1.8E-08 52.5 8.6 69 402-470 3-74 (93)
200 2l6j_A TPR repeat-containing p 97.4 0.00016 5.4E-09 57.3 5.3 98 98-197 3-105 (111)
201 1zu2_A Mitochondrial import re 97.4 0.00011 3.6E-09 62.0 4.2 85 385-469 14-121 (158)
202 3qwp_A SET and MYND domain-con 97.3 0.00083 2.9E-08 67.7 10.4 115 381-505 295-427 (429)
203 3n71_A Histone lysine methyltr 97.3 0.0013 4.4E-08 67.4 11.9 127 211-365 319-463 (490)
204 1klx_A Cysteine rich protein B 97.1 0.0059 2E-07 50.6 12.0 110 113-231 9-127 (138)
205 1zu2_A Mitochondrial import re 97.1 0.0005 1.7E-08 57.9 5.0 51 390-440 63-126 (158)
206 1klx_A Cysteine rich protein B 97.1 0.0052 1.8E-07 50.9 11.1 115 316-469 9-127 (138)
207 1na3_A Designed protein CTPR2; 97.0 0.0047 1.6E-07 46.3 9.9 81 99-182 9-89 (91)
208 1dce_A Protein (RAB geranylger 97.0 0.014 4.9E-07 61.1 16.6 150 315-468 42-221 (567)
209 1wy6_A Hypothetical protein ST 97.0 0.058 2E-06 43.1 15.6 140 313-471 18-157 (172)
210 3mkq_A Coatomer beta'-subunit; 97.0 0.053 1.8E-06 59.7 21.4 166 108-327 608-774 (814)
211 3qww_A SET and MYND domain-con 96.9 0.0052 1.8E-07 61.8 11.3 92 350-441 311-423 (433)
212 3ma5_A Tetratricopeptide repea 96.8 0.005 1.7E-07 47.6 8.6 64 301-365 6-69 (100)
213 3qwp_A SET and MYND domain-con 96.8 0.0096 3.3E-07 59.9 12.8 101 344-444 294-415 (429)
214 3qww_A SET and MYND domain-con 96.8 0.0016 5.5E-08 65.5 6.8 83 385-467 310-410 (433)
215 2kat_A Uncharacterized protein 96.8 0.0061 2.1E-07 48.4 9.0 73 118-193 4-76 (115)
216 3mkq_A Coatomer beta'-subunit; 96.7 0.081 2.8E-06 58.2 20.5 102 280-399 661-762 (814)
217 1pc2_A Mitochondria fission pr 96.7 0.0085 2.9E-07 49.8 9.1 91 403-511 30-125 (152)
218 3ly7_A Transcriptional activat 96.6 0.031 1.1E-06 54.0 13.7 63 404-467 276-338 (372)
219 2kc7_A BFR218_protein; tetratr 96.6 0.0085 2.9E-07 45.9 8.0 63 380-442 7-72 (99)
220 2kc7_A BFR218_protein; tetratr 96.5 0.0047 1.6E-07 47.4 6.2 59 411-469 6-65 (99)
221 3ly7_A Transcriptional activat 95.7 0.23 7.9E-06 48.0 14.8 63 300-364 275-337 (372)
222 2v5f_A Prolyl 4-hydroxylase su 95.6 0.063 2.2E-06 41.6 8.7 69 377-445 9-86 (104)
223 3mkq_B Coatomer subunit alpha; 95.5 1 3.5E-05 38.3 16.3 103 178-297 13-115 (177)
224 3mkq_B Coatomer subunit alpha; 95.4 0.61 2.1E-05 39.7 14.6 129 279-431 13-141 (177)
225 3u64_A Protein TP_0956; tetrat 95.4 0.047 1.6E-06 50.6 8.1 86 389-474 179-275 (301)
226 1qsa_A Protein (soluble lytic 95.2 3.7 0.00013 43.0 28.5 250 173-433 75-347 (618)
227 3bee_A Putative YFRE protein; 94.9 0.23 7.7E-06 37.5 9.6 69 371-439 4-77 (93)
228 1pc2_A Mitochondria fission pr 94.6 0.11 3.7E-06 43.1 7.6 38 405-442 71-108 (152)
229 3lvg_A Clathrin heavy chain 1; 94.6 0.0015 5E-08 64.5 -4.2 238 67-323 53-325 (624)
230 1nzn_A CGI-135 protein, fissio 94.3 0.26 9E-06 39.3 9.0 43 424-466 57-101 (126)
231 1wy6_A Hypothetical protein ST 93.4 2.5 8.5E-05 33.9 13.6 140 110-268 18-157 (172)
232 1y8m_A FIS1; mitochondria, unk 93.2 2.3 7.9E-05 34.5 12.6 91 402-510 36-130 (144)
233 2v5f_A Prolyl 4-hydroxylase su 93.1 0.67 2.3E-05 35.6 9.5 65 404-468 4-75 (104)
234 3u64_A Protein TP_0956; tetrat 92.6 0.22 7.4E-06 46.2 6.6 63 375-437 201-272 (301)
235 4gns_B Protein CSD3, chitin bi 92.2 0.6 2.1E-05 49.9 10.4 54 413-466 345-398 (754)
236 4h7y_A Dual specificity protei 92.1 1.3 4.4E-05 36.3 9.7 38 96-135 10-53 (161)
237 2wpv_A GET4, UPF0363 protein Y 91.6 9.1 0.00031 36.0 19.1 169 69-264 34-216 (312)
238 4ady_A RPN2, 26S proteasome re 91.0 14 0.00049 40.4 19.3 299 80-387 386-720 (963)
239 1nzn_A CGI-135 protein, fissio 90.5 1.7 5.7E-05 34.6 8.9 37 407-443 76-112 (126)
240 4h7y_A Dual specificity protei 90.4 1.3 4.4E-05 36.3 8.1 53 387-439 74-128 (161)
241 4b4t_P 26S proteasome regulato 89.8 9.6 0.00033 38.1 16.2 252 47-299 30-323 (445)
242 3lvg_A Clathrin heavy chain 1; 89.0 0.1 3.5E-06 51.8 0.9 378 32-461 82-534 (624)
243 3lpz_A GET4 (YOR164C homolog); 88.2 18 0.00061 34.3 21.2 168 70-264 37-215 (336)
244 3o48_A Mitochondria fission 1 87.3 3.6 0.00012 32.9 8.6 33 407-439 80-112 (134)
245 3ffl_A Anaphase-promoting comp 86.9 3.8 0.00013 34.2 9.0 23 378-400 127-149 (167)
246 2uwj_G Type III export protein 86.8 8.2 0.00028 28.9 9.9 86 150-240 21-106 (115)
247 2p58_C Putative type III secre 86.3 8.7 0.0003 28.8 9.9 86 150-240 22-107 (116)
248 4ady_A RPN2, 26S proteasome re 86.1 44 0.0015 36.6 20.0 157 246-408 500-664 (963)
249 4gns_B Protein CSD3, chitin bi 85.6 21 0.00071 38.2 16.1 127 69-197 249-398 (754)
250 2ff4_A Probable regulatory pro 85.5 1.6 5.5E-05 43.0 7.3 67 409-475 175-246 (388)
251 1v54_E Cytochrome C oxidase po 84.2 5.1 0.00017 30.2 7.5 63 317-381 25-87 (109)
252 2p58_C Putative type III secre 83.1 11 0.00036 28.3 8.7 79 47-129 21-99 (116)
253 2uwj_G Type III export protein 82.9 10 0.00035 28.4 8.5 79 47-129 20-98 (115)
254 4fhn_B Nucleoporin NUP120; pro 80.5 38 0.0013 38.5 17.0 165 173-355 815-989 (1139)
255 1y8m_A FIS1; mitochondria, unk 79.7 22 0.00076 28.8 10.4 35 407-441 79-113 (144)
256 2ff4_A Probable regulatory pro 79.6 7.3 0.00025 38.2 9.4 67 104-172 176-247 (388)
257 3o48_A Mitochondria fission 1 79.3 16 0.00053 29.3 9.2 84 320-404 21-110 (134)
258 2wpv_A GET4, UPF0363 protein Y 79.3 42 0.0014 31.5 23.3 169 172-366 35-217 (312)
259 1v54_E Cytochrome C oxidase po 75.7 15 0.00052 27.7 7.6 62 217-279 26-87 (109)
260 2y69_E Cytochrome C oxidase su 75.5 14 0.00049 29.4 7.9 63 317-381 68-130 (152)
261 4fhn_B Nucleoporin NUP120; pro 74.8 59 0.002 37.0 16.3 22 276-297 847-868 (1139)
262 3ffl_A Anaphase-promoting comp 74.5 35 0.0012 28.5 10.5 111 75-198 27-150 (167)
263 3lpz_A GET4 (YOR164C homolog); 74.4 59 0.002 30.7 24.0 167 173-365 38-215 (336)
264 1qsa_A Protein (soluble lytic 68.0 1.2E+02 0.0041 31.6 35.0 393 54-472 57-483 (618)
265 4b4t_P 26S proteasome regulato 67.6 1E+02 0.0035 30.6 24.8 96 304-399 139-244 (445)
266 1zbp_A Hypothetical protein VP 66.0 66 0.0023 29.3 11.2 119 311-440 6-135 (273)
267 3esl_A Checkpoint serine/threo 66.0 65 0.0022 27.8 13.7 105 390-512 61-171 (202)
268 1zbp_A Hypothetical protein VP 65.9 12 0.0004 34.1 6.4 55 383-437 7-63 (273)
269 2y69_E Cytochrome C oxidase su 63.9 48 0.0017 26.5 8.5 60 117-178 71-130 (152)
270 2qx5_A Nucleoporin NIC96; mRNA 63.6 99 0.0034 32.4 13.7 80 141-227 300-382 (661)
271 3mv2_A Coatomer subunit alpha; 62.8 69 0.0024 30.0 11.0 58 397-468 197-256 (325)
272 1wdy_A 2-5A-dependent ribonucl 62.3 55 0.0019 29.4 10.9 46 250-295 193-240 (285)
273 3txn_A 26S proteasome regulato 61.5 1.2E+02 0.0042 29.4 22.8 277 71-366 22-343 (394)
274 3ltm_A Alpha-REP4; protein eng 59.7 83 0.0028 26.9 18.8 153 66-228 31-183 (211)
275 4a1g_A Mitotic checkpoint seri 55.7 84 0.0029 25.7 9.4 49 423-471 83-133 (152)
276 3ltj_A Alpharep-4; protein eng 55.3 95 0.0033 26.2 19.4 78 134-215 89-166 (201)
277 4b4t_R RPN7, 26S proteasome re 54.9 58 0.002 32.2 10.0 96 273-368 133-239 (429)
278 4b4t_R RPN7, 26S proteasome re 53.0 1.3E+02 0.0045 29.5 12.2 96 304-399 133-234 (429)
279 2ion_A PDCD4, programmed cell 52.8 87 0.003 25.6 9.0 65 173-237 12-81 (152)
280 1wdy_A 2-5A-dependent ribonucl 52.1 62 0.0021 29.1 9.3 204 39-258 8-238 (285)
281 3ltj_A Alpharep-4; protein eng 51.1 1.1E+02 0.0038 25.8 20.6 18 335-352 150-167 (201)
282 2nsz_A Programmed cell death p 51.0 90 0.0031 24.7 10.4 65 173-237 10-79 (129)
283 1oai_A Nuclear RNA export fact 50.5 11 0.00038 25.2 2.6 25 112-136 33-57 (59)
284 2wvi_A Mitotic checkpoint seri 49.8 1.1E+02 0.0038 25.4 9.2 47 424-470 79-127 (164)
285 2qx5_A Nucleoporin NIC96; mRNA 48.6 1.9E+02 0.0063 30.4 12.8 44 101-147 155-198 (661)
286 1ug3_A EIF4GI, eukaryotic prot 47.6 1.2E+02 0.0041 28.7 10.5 63 173-235 14-80 (339)
287 1k1a_A B-cell lymphoma 3-encod 47.3 1.1E+02 0.0036 26.7 9.8 54 41-94 14-69 (241)
288 2nsz_A Programmed cell death p 44.7 83 0.0028 24.9 7.5 62 274-335 10-76 (129)
289 2pk8_A Uncharacterized protein 44.4 18 0.00061 26.4 3.0 48 488-543 13-60 (103)
290 1k1a_A B-cell lymphoma 3-encod 43.9 1.3E+02 0.0044 26.1 9.9 19 178-196 84-102 (241)
291 3ltm_A Alpha-REP4; protein eng 42.0 1.6E+02 0.0055 25.0 20.3 18 198-215 61-78 (211)
292 2lo3_A SAGA-associated factor 41.4 10 0.00035 22.9 1.1 17 545-565 9-25 (44)
293 2l0z_A Glycoprotein G2; zinc-b 39.8 9 0.00031 23.0 0.7 17 583-599 12-29 (42)
294 2d2s_A Exocyst complex compone 39.6 1.6E+02 0.0056 26.0 9.4 23 207-229 24-46 (235)
295 3kea_A K1L; tropism, ANK repea 39.3 1.3E+02 0.0045 27.3 9.3 21 176-196 132-152 (285)
296 3eiq_C Programmed cell death p 37.2 2.8E+02 0.0096 26.4 15.2 80 304-385 219-300 (358)
297 2d2s_A Exocyst complex compone 36.4 1.1E+02 0.0037 27.2 7.7 87 308-398 24-116 (235)
298 2ion_A PDCD4, programmed cell 36.4 75 0.0026 26.0 6.1 62 274-335 12-78 (152)
299 4gq2_M Nucleoporin NUP120; bet 36.1 3.1E+02 0.011 30.3 12.9 85 343-433 816-925 (950)
300 2zu6_B Programmed cell death p 35.9 2.7E+02 0.0092 25.8 14.8 70 304-375 168-239 (307)
301 3ljn_A Hypothetical protein; a 35.5 1.4E+02 0.0047 28.2 9.1 96 29-129 14-111 (364)
302 1oyz_A Hypothetical protein YI 33.5 2.6E+02 0.0089 25.0 21.4 243 89-349 27-279 (280)
303 3hra_A Ankyrin repeat family p 33.0 1.5E+02 0.005 24.8 8.1 16 79-94 13-28 (201)
304 3jxi_A Vanilloid receptor-rela 32.4 58 0.002 29.0 5.5 88 108-196 11-116 (260)
305 3eu9_A Huntingtin-interacting 30.8 1.3E+02 0.0044 26.0 7.5 20 75-94 46-65 (240)
306 4b4t_S RPN3, 26S proteasome re 30.8 1.4E+02 0.0048 30.1 8.1 60 337-398 231-295 (523)
307 3bqo_A Telomeric repeat-bindin 30.7 2.5E+02 0.0087 24.0 8.3 59 389-447 94-159 (211)
308 2zu6_B Programmed cell death p 30.1 1.5E+02 0.0051 27.6 7.8 66 173-238 169-239 (307)
309 3e3v_A Regulatory protein RECX 28.7 2.6E+02 0.0088 23.4 9.3 28 373-400 136-164 (177)
310 3hra_A Ankyrin repeat family p 28.4 1.7E+02 0.0059 24.3 7.7 151 109-270 12-172 (201)
311 1n11_A Ankyrin; clathrin, BAND 27.3 3.7E+02 0.013 25.9 11.0 52 383-435 252-305 (437)
312 4gq2_M Nucleoporin NUP120; bet 27.2 6.1E+02 0.021 27.9 13.4 52 176-228 816-867 (950)
313 3txn_A 26S proteasome regulato 26.9 4.4E+02 0.015 25.5 27.7 87 370-469 253-344 (394)
314 3ygs_P Procaspase 9; apoptosis 26.9 63 0.0021 24.0 3.8 39 184-222 51-89 (97)
315 3ygs_P Procaspase 9; apoptosis 26.7 66 0.0023 23.9 3.9 62 54-119 25-88 (97)
316 2r9g_A AAA ATPase, central reg 26.3 3.1E+02 0.011 23.5 10.0 56 212-268 25-85 (204)
317 3esl_A Checkpoint serine/threo 25.1 3.3E+02 0.011 23.4 11.0 83 186-269 60-148 (202)
318 2k0q_A Putative uncharacterize 25.0 17 0.00059 24.9 0.2 23 576-598 8-30 (74)
319 3qye_A TBC1 domain family memb 24.9 4.2E+02 0.014 24.6 11.2 130 113-249 163-307 (331)
320 3eu9_A Huntingtin-interacting 24.0 97 0.0033 26.8 5.3 203 79-299 17-235 (240)
321 1ug3_A EIF4GI, eukaryotic prot 23.6 4.6E+02 0.016 24.6 10.4 60 275-334 15-78 (339)
322 2r9g_A AAA ATPase, central reg 23.5 3.5E+02 0.012 23.2 9.4 44 308-352 17-63 (204)
323 2fe3_A Peroxide operon regulat 23.4 1.7E+02 0.0059 23.4 6.2 34 151-184 37-70 (145)
324 2p1h_A APAF-1, apoptotic prote 23.3 2.2E+02 0.0074 20.7 6.7 37 284-320 49-85 (94)
325 3eiq_C Programmed cell death p 22.9 4.9E+02 0.017 24.7 16.8 26 72-97 58-83 (358)
326 2hgo_A CASSIICOLIN; toxin, dis 22.5 18 0.00062 18.7 -0.0 13 588-600 8-22 (27)
327 3b7b_A Euchromatic histone-lys 22.3 2E+02 0.0068 24.7 7.1 141 42-196 17-167 (237)
328 2p1h_A APAF-1, apoptotic prote 22.1 2.3E+02 0.0078 20.5 6.9 62 155-220 25-86 (94)
329 3l6a_A Eukaryotic translation 22.1 3.7E+02 0.013 25.6 9.1 65 173-237 15-84 (364)
330 1bpo_A Protein (clathrin); cla 22.1 5.9E+02 0.02 25.2 12.0 128 263-400 353-483 (494)
331 4b4t_S RPN3, 26S proteasome re 21.9 1.7E+02 0.006 29.4 6.9 63 405-467 231-298 (523)
332 1qc6_A EVH1 domain from ENA/VA 21.9 35 0.0012 27.2 1.6 41 547-595 43-87 (130)
333 3mkr_B Coatomer subunit alpha; 21.2 2.2E+02 0.0076 26.5 7.0 59 396-468 187-247 (320)
334 1n11_A Ankyrin; clathrin, BAND 20.9 2.3E+02 0.0077 27.5 7.8 110 75-195 18-135 (437)
335 2xig_A Ferric uptake regulatio 20.8 2.7E+02 0.0091 22.5 6.9 62 327-390 17-78 (150)
336 3b7b_A Euchromatic histone-lys 20.7 1.7E+02 0.0059 25.2 6.3 19 177-195 81-99 (237)
337 3ljn_A Hypothetical protein; a 20.5 1.6E+02 0.0054 27.8 6.4 48 179-227 59-107 (364)
338 3bge_A Predicted ATPase; struc 20.5 4E+02 0.014 22.8 8.3 90 308-398 10-107 (201)
339 3bu8_A Telomeric repeat-bindin 20.3 3.9E+02 0.013 23.3 7.6 47 353-399 88-140 (235)
340 3aji_A 26S proteasome non-ATPa 20.2 2.6E+02 0.0089 23.8 7.4 17 77-93 12-28 (231)
341 2fe3_A Peroxide operon regulat 20.2 2E+02 0.0068 23.0 5.9 63 326-390 11-73 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-39 Score=348.86 Aligned_cols=430 Identities=10% Similarity=-0.003 Sum_probs=385.7
Q ss_pred CCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccC--CCCCcchHHHHHHH
Q 007530 31 TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM--PQRCIVSWNTIIGS 108 (600)
Q Consensus 31 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~ 108 (600)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 57788999999999999999999999999854 578889999999999999999999999998 46789999999999
Q ss_pred HHcCCChhHHHHHHHHHHHc---------------CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH
Q 007530 109 YTTNGREQEAVALFINMLRE---------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~---------------g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 173 (600)
|.+.|++++|+++|+++... | .+++..+|+.++.++.+.|++++|.++|+.+.+.++. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG-IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSS-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccc-cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 99999999999999853222 2 3446889999999999999999999999999998643 33333
Q ss_pred --------------------------------------HHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHHHHHHHHh
Q 007530 174 --------------------------------------TALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQ 213 (600)
Q Consensus 174 --------------------------------------~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~ 213 (600)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 3336677789999999999999988 799999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 007530 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293 (600)
Q Consensus 214 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 293 (600)
.|++++|+++|++|...+ +.+..++..++.++.+.|++++|..++..+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999765 3477889999999999999999999999999764 66889999999999999999999999
Q ss_pred HhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 007530 294 FSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370 (600)
Q Consensus 294 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 370 (600)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+.+.+.. +
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--Q 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 99875 3568899999999999999999999999999863 4578899999999999999999999999997543 3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 371 PNVFHYSCMIDILGRAGLIHEAYDLILNM-------PFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 46789999999999999999999999987 45777 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 442 HLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 442 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
|..++.+|.+.|++++|.+.++++.+..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-36 Score=325.61 Aligned_cols=414 Identities=8% Similarity=-0.067 Sum_probs=365.2
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC-----------
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR----------- 97 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----------- 97 (600)
..|+..++..+..+|.+.|+++.|..+++.+... ++++.+++.++.+|.++|++++|+++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4567789999999999999999999999987643 788999999999999999999999999965433
Q ss_pred --------CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH----------------------------
Q 007530 98 --------CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV---------------------------- 141 (600)
Q Consensus 98 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l---------------------------- 141 (600)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |.+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 47899999999999999999999999999874 3333333333
Q ss_pred ----------HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHH
Q 007530 142 ----------LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMV 208 (600)
Q Consensus 142 ----------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li 208 (600)
+..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence 44556778899999999998776 57899999999999999999999999999863 4778999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 007530 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288 (600)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 288 (600)
.+|.+.|++++|.++|+++.... +.+..++..++..|.+.|++++|.+++..+.+.. +.+..+++.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998653 5578899999999999999999999999999865 557889999999999999999
Q ss_pred HHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 289 DAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 289 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..|.+.|++++|.++|+.+.+
T Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999875 3578999999999999999999999999999863 44788999999999999999999999999975
Q ss_pred hc---CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 366 QH---NVLPN--VFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 366 ~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.. +..|+ ..+|..++.+|.+.|++++|.++++++ ... .+..+|..+..+|...|++++|...++++++++|++
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 42 66787 789999999999999999999999987 233 478999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHh
Q 007530 439 AGNHLLLSNIYAA 451 (600)
Q Consensus 439 ~~~~~~l~~~~~~ 451 (600)
+..+..++++|..
T Consensus 584 ~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 584 IMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHhc
Confidence 9999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=254.74 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------chHHHHHHHHHHHHhCCCCchh
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA---------ALIQGKQVHAVLCKTGFGSNMF 272 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~~~~~~~~~~~~~~~~ 272 (600)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4577778888888888888888888888888888888888888887554 3677888888888888888888
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 348 (600)
+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888776 36888888888888888888888888888888888888888888888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 385 (600)
+.|++++|.++|++|. +.+..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888884 56888888888888887765
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.9e-26 Score=231.44 Aligned_cols=372 Identities=13% Similarity=0.068 Sum_probs=234.1
Q ss_pred HhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHcCCChhHHH
Q 007530 43 CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTIIGSYTTNGREQEAV 119 (600)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 119 (600)
+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++... ..+..+|+.+...|.+.|++++|+
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555555555442 2333444444455555555555555554332 123445555555555555555555
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC
Q 007530 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199 (600)
Q Consensus 120 ~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 199 (600)
..|+++.+. .|.+..++..+..++...|++++|...+..+++..+. +..++..+...|...|++++|.+.
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~------- 157 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC------- 157 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH-------
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH-------
Confidence 555555543 2333344555555555555555555555555544322 233344444444444444444444
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
|+++.... +.+..++..+...+...|++++|...+..+++.+ +.+...+..+..
T Consensus 158 ------------------------~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 158 ------------------------YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp ------------------------HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ------------------------HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44444321 1123344444444444444444444444444433 334445555666
Q ss_pred HHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 356 (600)
.+...|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666443 2356778888888888888999999998888752 22467788888889999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 357 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
...|+.+.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++
T Consensus 291 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 291 EDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999887542 456778888999999999999999999886 3344 4788999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCC
Q 007530 435 EPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~ 454 (600)
+|+++..+..++.++...|+
T Consensus 369 ~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHhHHHHHHHccC
Confidence 99999999999988877653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.2e-25 Score=226.58 Aligned_cols=353 Identities=14% Similarity=0.052 Sum_probs=308.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...+.+.|++++|++.+.++.+. .|.+...+..+...+...|++++|...+..+++..+ .+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 45567789999999999998886 455667777788888899999999999999888753 478899999999999999
Q ss_pred HHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 186 ISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 186 ~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+++|.+.|+++.+ | +..+|..+...+.+.|++++|++.|+++... .|+ ...+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 5668999999999999999999999999875 454 44566777888899999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NE 337 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~ 337 (600)
+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 55688999999999999999999999998763 45778999999999999999999999999885 44 57
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 415 (600)
.++..+...+...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|.+.++++ ..+++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 888999999999999999999999997532 235678999999999999999999999987 2345788999999999
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++++++..|+++..+..++.+|.+.|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.9e-28 Score=252.01 Aligned_cols=184 Identities=9% Similarity=0.013 Sum_probs=164.6
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCCh
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD---------VFECKQLHVFALKAAMDRNV 170 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 170 (600)
..++.+|++|++.|++++|+++|++|.+.| ++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 457888899999999999999999999998 99999999999999987654 57788999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 246 (600)
.+||+||++|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998864 789999999999999999999999999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 007530 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 284 (600)
++.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998888764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.3e-22 Score=208.52 Aligned_cols=325 Identities=8% Similarity=-0.012 Sum_probs=229.3
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
+...|..+...+.+.|++++|+.+|+++.+. .|.+..++..+..++...|++++|...+..+++.++. +..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 4456666777777777777777777777665 3556666777777777777777777777777766533 456666677
Q ss_pred HHHHHcCCHHHHHHHHccCCCC---CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 007530 178 DVYAKCGLISDASRVFESMPER---NE---VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~---d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 251 (600)
.+|.+.|++++|.+.|+++.+. +. ..|..++..+...+ +......+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 7777777777777777666442 22 44555444321111 1112223444555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007530 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKM 328 (600)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 328 (600)
+++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|+.+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555543 34556666777777777777777777776642 46778888888888888999999999888
Q ss_pred HHcCCCCCH-HHHHHH------------HHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHH
Q 007530 329 QQAGLHPNE-QTYISV------------LSACSHIGMVEKGKSYFDLMVKQHNVLPN--VFHYSCMIDILGRAGLIHEAY 393 (600)
Q Consensus 329 ~~~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 393 (600)
... .|+. ..+..+ ...|.+.|++++|...|+.+.+..+-.|. ..++..+..++.+.|++++|.
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 864 4443 333333 78899999999999999999864322222 458899999999999999999
Q ss_pred HHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 394 DLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 394 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
..++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++.+...
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 999986 3334 689999999999999999999999999999999999888888865443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-22 Score=211.93 Aligned_cols=427 Identities=10% Similarity=-0.038 Sum_probs=306.1
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHH
Q 007530 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYT 110 (600)
Q Consensus 34 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 110 (600)
..+...-..+...|+++.|...+..+++.. |++.++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345555666777778888888888777765 5777777777888888888888887776542 34567777777788
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH---HHHHHHcCCHH
Q 007530 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL---LDVYAKCGLIS 187 (600)
Q Consensus 111 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~ 187 (600)
+.|++++|+..|+++...+ +++......++..+........+.+.+..+.+.+..|+....+.- ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 8888888888888777764 445455555554444333333333333222222111111111100 00001111111
Q ss_pred HHHHHHccCC---------CC-CHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----cCCC--------CCHHHHHH
Q 007530 188 DASRVFESMP---------ER-NEVTWSSMVAGFVQ---NELYEEALILFRRAQV-----LGLE--------YNQFTISS 241 (600)
Q Consensus 188 ~A~~~f~~m~---------~~-d~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ 241 (600)
.+...+.... .+ +...|......+.. .|++++|+..|+++.. ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1222222211 11 24455555555554 8999999999999987 3112 23456777
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCCh
Q 007530 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARS 318 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 318 (600)
+...+...|++++|...+..+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999988643 88899999999999999999999987653 4677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (600)
++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998863 3356788888999999999999999999997653 23566888999999999999999999987
Q ss_pred C----CCCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 399 M----PFDAT----ASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 399 m----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+ +..++ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|...|++++|...++...+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6 22233 4489999999999 99999999999999999999999999999999999999999999999886
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
.+
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 54
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-22 Score=212.17 Aligned_cols=409 Identities=8% Similarity=-0.089 Sum_probs=301.0
Q ss_pred CCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHH
Q 007530 31 TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIG 107 (600)
Q Consensus 31 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 107 (600)
|+..++..+..++...|+++.|...+..+++.. +.+..++..+..+|.+.|++++|...|+.+.. ++......++.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 688999999999999999999999999999876 56778999999999999999999999997643 34555566666
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC---------CCChhHHHHHHH
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM---------DRNVFVGTALLD 178 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~ 178 (600)
.+........+.+.+..+...+ ..|+...+..-...............+...+..... +.+...+..+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTAT-ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHTTC----------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 5555444445544444444443 222222222111111111122222222111111111 112444445555
Q ss_pred HHHH---cCCHHHHHHHHccCCC----------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007530 179 VYAK---CGLISDASRVFESMPE----------------R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238 (600)
Q Consensus 179 ~y~~---~g~~~~A~~~f~~m~~----------------~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 238 (600)
.+.. .|++++|...|+++.+ + +..+|..+...+...|++++|+..|+++.... |+...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 5554 8899999998887644 1 35678888999999999999999999998764 44778
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhc
Q 007530 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRH 315 (600)
Q Consensus 239 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 315 (600)
+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++.. ..+...|..+...|...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 8888899999999999999999998765 5567788999999999999999999998764 34677899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHh---cCC
Q 007530 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGR---AGL 388 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~ 388 (600)
|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...|.+ .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998863 335678888899999999999999999998764333333 4488899999999 999
Q ss_pred HHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 389 IHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 389 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+++|...++++ .. +.+..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999886 22 34578899999999999999999999999999999987766555
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1e-20 Score=196.07 Aligned_cols=346 Identities=10% Similarity=0.005 Sum_probs=218.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 141 (600)
+.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+..+|.+.|++++|+..|+++.+.+ |.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence 45667778888888888888888888887642 467788888888888888888888888888863 5567788888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCh---hHHHHHHHH------------HHHcCCHHHHHHHHccCCC---CCHHH
Q 007530 142 LCACAAKRDVFECKQLHVFALKAAMDRNV---FVGTALLDV------------YAKCGLISDASRVFESMPE---RNEVT 203 (600)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~------------y~~~g~~~~A~~~f~~m~~---~d~~~ 203 (600)
..++...|++++|...+..+.+..+. +. .++..++.. |.+.|++++|...|+++.+ .+..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 88888888888888888888776432 33 455555443 6666666666666666542 35556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007530 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283 (600)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 283 (600)
|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+...+..+...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~--- 254 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV--- 254 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH---
Confidence 6666666666666666666666665532 2345556666666666666666666666665543 2222222222000
Q ss_pred hCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHH
Q 007530 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-----EQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
.....+..+...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|..
T Consensus 255 ----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 255 ----------------KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 00011122355666667777777777776663 343 2355566666667777777777
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH------------HHHcC-----
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLAS------------CRNYR----- 419 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~~----- 419 (600)
.++.+.+.. +.+...|..+..+|...|++++|...++++ ...|+ ...+..+..+ |...|
T Consensus 317 ~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 777665431 224566666777777777777777776665 33443 4444444422 22223
Q ss_pred ChHHHHHHHHH-HhcCCCCC
Q 007530 420 NLELAEIAAKQ-LFGMEPDN 438 (600)
Q Consensus 420 ~~~~a~~~~~~-~~~~~p~~ 438 (600)
+.+++.+.+++ +++..|++
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGG
T ss_pred CHHHHHHHHHHHHHHhCCCC
Confidence 56677888876 66777764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.6e-20 Score=199.29 Aligned_cols=423 Identities=7% Similarity=-0.059 Sum_probs=323.0
Q ss_pred HhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHH
Q 007530 33 LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTIIGSY 109 (600)
Q Consensus 33 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 109 (600)
...+...-..+.+.|+++.|...+..+++.. +.++.++..+...|.+.|++++|.+.|+++. ..+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567777788889999999999999999876 5678899999999999999999999999865 34677899999999
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHHcCCHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM--DRNVFVGTALLDVYAKCGLIS 187 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~ 187 (600)
...|++++|+..|+.+... |+.. ...+..+...+....+...+..+++..+ .+........+..|....+.+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN----GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcCCHHHHHHHHHHHhcC----CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999644222 2211 1112233334445677777777755421 111122344556677788888
Q ss_pred HHHHHHccCCCCCHH---HHHHHHHHHHhC--------CCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHc
Q 007530 188 DASRVFESMPERNEV---TWSSMVAGFVQN--------ELYEEALILFRRAQVLGLEYN--------QFTISSVICACAG 248 (600)
Q Consensus 188 ~A~~~f~~m~~~d~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~ 248 (600)
.+...+......+.. .+..+...+... |++++|+.+|+++... .|+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 888888877765433 444444433332 4789999999998864 343 2246666677888
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
.|++++|...+..+++.. |+..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999875 4478888999999999999999999997763 46788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC----CC
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM----PF 401 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 401 (600)
+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ |.
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9998863 2346788889999999999999999999997653 335668888999999999999999999876 11
Q ss_pred C----CCHHHHHHHHHHHHHc----------CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 402 D----ATASMWGSLLASCRNY----------RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 402 ~----p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
. .....+..+...+... |++++|...++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1233345556677777 9999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=4.4e-18 Score=170.01 Aligned_cols=312 Identities=8% Similarity=-0.001 Sum_probs=208.2
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
+..|..+...+.+.|++++|+..|+++.+. .|.+..++..+...+...|++++|...+..+++..+. +..++..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 445667777777788888888888877776 3556667777777777777777777777777776433 5566777777
Q ss_pred HHHHcCCHHHHHHHHccCCC--C----CHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 179 VYAKCGLISDASRVFESMPE--R----NEVTWSSM------------VAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~--~----d~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 240 (600)
.|.+.|++++|...|++..+ | +...+..+ ...+...|++++|+..|+++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------ 147 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL------------ 147 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH------------
Confidence 77777777777777776644 2 22233333 344445555555555555444
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC
Q 007530 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR 317 (600)
Q Consensus 241 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 317 (600)
+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|+
T Consensus 148 -----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 148 -----------------------EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp -----------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred -----------------------HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 432 23344455555555555555555555554432 345566666667777777
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHccCCHHHHHHHHHHHHHhcCCCccH--HHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPN-EQTYI------------SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV--FHYSCMIDI 382 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~ 382 (600)
+++|+..|++..+. .|+ ...+. .+...+...|++++|...++.+.+...-.+.. ..+..+...
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 77777777777664 232 22221 23556778899999999998887543222221 335567788
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 383 LGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++..
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88999999999988876 2234 678899999999999999999999999999999988887777776554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=6.6e-18 Score=168.76 Aligned_cols=307 Identities=12% Similarity=0.011 Sum_probs=236.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAG 210 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~ 210 (600)
|...+..+...+...|++++|...+..+++..+. +..++..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3456677777788888888888888888877543 567777788888888888888888877643 356677777888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC---CH-HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 211 FVQNELYEEALILFRRAQVLGLEY---NQ-FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
|.+.|++++|+..|++.... .| +. ..+..+... .. ...+..+...|...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccC
Confidence 88888888888888877654 34 22 122111111 00 1123335678899999
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
+++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 567889999999999999999999999998863 446788889999999999999999999999
Q ss_pred HHhcCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHcC-CCCCC-H----HHHHHHHHHHHHcCChHHHH
Q 007530 364 VKQHNVLPNVFHYS------------CMIDILGRAGLIHEAYDLILNM-PFDAT-A----SMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 364 ~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~a~ 425 (600)
.+...- +...+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|.
T Consensus 215 ~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 765322 222222 3366789999999999999886 22333 3 23556778899999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..++++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988653
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.3e-18 Score=184.36 Aligned_cols=402 Identities=9% Similarity=-0.024 Sum_probs=298.2
Q ss_pred CCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHH
Q 007530 30 ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109 (600)
Q Consensus 30 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 109 (600)
|.+..++..+..++...|+++.|...+..+++.. +.+..++..+...|.+.|++++|.+.|+.+ ..+....+..+..+
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~ 133 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPM 133 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHH
Confidence 3467888889999999999999999999999876 567889999999999999999999999744 33333334445566
Q ss_pred HcCCChhHHHHHHHHHHHcC-----CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHH-
Q 007530 110 TTNGREQEAVALFINMLREG-----KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAK- 182 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~- 182 (600)
...+...+|+..++++.... ...|+...+. .+....+.+.+...+..... ..+. ......+...+..
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhh
Confidence 66677789999999986541 0223333333 33334444433322211111 1111 1133334433332
Q ss_pred -------cCCHHHHHHHHccCCC--CC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 183 -------CGLISDASRVFESMPE--RN--------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245 (600)
Q Consensus 183 -------~g~~~~A~~~f~~m~~--~d--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 245 (600)
.|++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++.... .|+...+..+...
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 2578999999988765 22 235777778899999999999999999885 4667888889999
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHH
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999876 55788899999999999999999999998763 45678999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhc----------CC
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP----NVFHYSCMIDILGRA----------GL 388 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~ 388 (600)
..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |+
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 9999998863 34567888899999999999999999999875432111 222344556677777 99
Q ss_pred HHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 389 IHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
+++|...|++. ... .+...|..+...+...|++++|...+++++++.|+++....
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999987 223 45789999999999999999999999999999998765433
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.1e-18 Score=172.78 Aligned_cols=346 Identities=12% Similarity=0.081 Sum_probs=162.6
Q ss_pred hcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 007530 80 KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 159 (600)
+.|++++|.+++++++.|+ +|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996664 999999999999999999999964 2477799999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007530 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239 (600)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 239 (600)
.+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 44578899999999999999999988864 67789999999999999999999999977 368
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChH
Q 007530 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319 (600)
Q Consensus 240 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 319 (600)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 89999999999999999999988 378999999999999999999988887765 44444556889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHHhcCCHHH
Q 007530 320 EVMILFEKMQQAGLHPNEQTYISVLSACSH--IGMVEKGKSYFDLMVKQHNVLP------NVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 320 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 391 (600)
+|+.+++...... +-....|+-+.-++++ .+++.+..+.|. +.-+++| +...|.-++-.|...+.++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987543 2234455555545554 455555555554 3345555 45678999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 392 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
|...+-+-+ |+.---..+.....+..+.+.--++..-.++-.| ...+-|..++...=+.+.+.++++.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 988766553 2211112222333344444444444433333333 3444555555544455555555443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.5e-17 Score=164.23 Aligned_cols=287 Identities=11% Similarity=-0.023 Sum_probs=174.9
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHH
Q 007530 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMV 208 (600)
Q Consensus 132 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li 208 (600)
+.+...+..+...+...|++++|..+++.+++..+. +...+..++..+.+.|++++|..+|+++.+ .+...|..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344445555555555555555555555555554322 333444444555555555555555544432 2344445555
Q ss_pred HHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 007530 209 AGFVQNE-LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 209 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 287 (600)
..+...| ++++|+..|++.. +.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKAT-----------------------------------TLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHH-----------------------------------TTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHH-----------------------------------HhC-CccHHHHHHHHHHHHHccCH
Confidence 5555555 4555555555444 332 22344445555555555555
Q ss_pred HHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 288 VDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 288 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555555554432 234555556667777777777777777776642 3345667777777777788888877777776
Q ss_pred HhcC-------CCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 365 KQHN-------VLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 365 ~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
+... .+.....+..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 4321 1234567778888888888888888888776 22 2356788888888888999999999999999999
Q ss_pred CCCcchHHHHHHHH-HhcCChH
Q 007530 436 PDNAGNHLLLSNIY-AANRRWE 456 (600)
Q Consensus 436 p~~~~~~~~l~~~~-~~~g~~~ 456 (600)
|+++..+..++.++ ...|+.+
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC--
T ss_pred CCchHHHHHHHHHHHHHhCchh
Confidence 99888888888887 4555443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=6.5e-16 Score=161.78 Aligned_cols=365 Identities=10% Similarity=-0.005 Sum_probs=274.5
Q ss_pred CchhHHHHHHHHHHh----cCChHHHHHHHccCCC-CCcchHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCChh
Q 007530 66 NDTLTSNILINFYSK----CGLISGARKVFDEMPQ-RCIVSWNTIIGSYTT----NGREQEAVALFINMLREGKTPYSEF 136 (600)
Q Consensus 66 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~ 136 (600)
.++.....|-.+|.. .+++++|...|+...+ .+..++..|...|.. .+++++|++.|++..+.| +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 356677777777777 7889999988886543 467778888888888 888999999999888876 566
Q ss_pred hHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHccCCC-CCHHHHHHH
Q 007530 137 TVSSVLCACAA----KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----CGLISDASRVFESMPE-RNEVTWSSM 207 (600)
Q Consensus 137 t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~l 207 (600)
.+..+...+.. .++.++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777 788999999999888875 56777888888887 7888999988887654 467788888
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 208 VAGFVQ----NELYEEALILFRRAQVLGLEYNQFTISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 208 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
...|.+ .+++++|++.|++..+.| +...+..+...+.. .+++++|...+....+.| +...+..|..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888887 888999999998887764 45566666666664 678888888888887765 3456666777
Q ss_pred HHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 280 MYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRH-----ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 280 ~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
+|.. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 7777 7888888888887654 4566777777777776 78888888888888765 34555666666665
Q ss_pred cC---CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----c
Q 007530 350 IG---MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN----Y 418 (600)
Q Consensus 350 ~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 418 (600)
.| +.++|.++|+...+. .+...+..|..+|.. .+++++|.++|++.-...+...+..|...+.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 45 778888888888643 355677777788877 78888888888876323467777778877777 7
Q ss_pred CChHHHHHHHHHHhcCCCC---CcchHHHHHHHHH
Q 007530 419 RNLELAEIAAKQLFGMEPD---NAGNHLLLSNIYA 450 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 450 (600)
++.++|...++++.+.+|+ ++.....|+.++.
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 8888888888888887743 5555555555544
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=6.6e-16 Score=163.42 Aligned_cols=391 Identities=11% Similarity=0.009 Sum_probs=231.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 007530 67 DTLTSNILINFYSKCGLISGARKVFDEMPQ--R-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143 (600)
Q Consensus 67 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~ 143 (600)
|...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++++.. .|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4445555554 2445555555555555432 2 3334555555555555555555555555543 134444444433
Q ss_pred HH-hcCCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHH---------cCCHHHHHHHHccCCC-CC---HHH
Q 007530 144 AC-AAKRDVFECKQ----LHVFALKA-AMDR-NVFVGTALLDVYAK---------CGLISDASRVFESMPE-RN---EVT 203 (600)
Q Consensus 144 ~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~m~~-~d---~~~ 203 (600)
.. ...|+.+.|++ +++.+++. |..| +..+|...+....+ .|+++.|.++|++..+ |+ ...
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 21 23344444433 44444332 3222 23444444444433 4556666666655433 21 122
Q ss_pred HHHHHHHH-------------HhCCCHHHHHHHHHHHH------HcC---CCCCH--------HHHHHHHHHHHcc----
Q 007530 204 WSSMVAGF-------------VQNELYEEALILFRRAQ------VLG---LEYNQ--------FTISSVICACAGL---- 249 (600)
Q Consensus 204 ~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~a~~~~---- 249 (600)
|....... .+.+++++|..++.++. +.. ++|+. ..|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22211100 12345666776666532 111 23431 2333333222211
Q ss_pred Cch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------hCCHH-------HHHHHHhcCCC---c-CHhHHHH
Q 007530 250 AAL----IQGKQVHAVLCKTGFGSNMFAASSLVDMYAK-------CGCVV-------DAYFVFSGIEE---K-NVVLWNT 307 (600)
Q Consensus 250 g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~ 307 (600)
++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 35667788877763 5567788888887775 68876 88888887653 3 5778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHH-H
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDI-L 383 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~ 383 (600)
++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.++|+...+. .| +...|...... +
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHH
Confidence 888888889999999999988874 5542 46777777777888899999999888643 23 23333322222 3
Q ss_pred HhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHH
Q 007530 384 GRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG----NHLLLSNIYAANRRWEE 457 (600)
Q Consensus 384 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~ 457 (600)
...|+.++|..+|++. ...| +...|..++......|+.+.|..++++++...|.++. .+...+......|+.+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3578888888888865 2223 5778888888888888899999999988887766554 66666777778888888
Q ss_pred HHHHHHHhhh
Q 007530 458 VARARKLIRD 467 (600)
Q Consensus 458 a~~~~~~m~~ 467 (600)
+..+.+++.+
T Consensus 482 ~~~~~~r~~~ 491 (530)
T 2ooe_A 482 ILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2e-15 Score=159.68 Aligned_cols=401 Identities=10% Similarity=0.045 Sum_probs=295.2
Q ss_pred CCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcchHHHHHH
Q 007530 30 ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIG 107 (600)
Q Consensus 30 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 107 (600)
|-|...|..++.. ...|+++.|+.+++.+++. .+.+...|..++..+.+.|++++|+++|++... |++..|...+.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3466788888874 6789999999999999875 366788999999999999999999999998764 77778888775
Q ss_pred HH-HcCCChhHHHH----HHHHHHHc-CCCCCChhhHHHHHHHHhc---------CCChHHHHHHHHHHHHhCCCCChhH
Q 007530 108 SY-TTNGREQEAVA----LFINMLRE-GKTPYSEFTVSSVLCACAA---------KRDVFECKQLHVFALKAAMDRNVFV 172 (600)
Q Consensus 108 ~~-~~~g~~~~A~~----~~~~m~~~-g~~~p~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~ 172 (600)
.. ...|+.++|.+ +|+..+.. |..+++...|...+..... .|+++.|+.+|+.+++........+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45677777665 77777654 4123455667776666544 6789999999999988311111233
Q ss_pred HHHHHHHH-------------HHcCCHHHHHHHHcc-------CC------CCC--------HHHHHHHHHHHHhC----
Q 007530 173 GTALLDVY-------------AKCGLISDASRVFES-------MP------ERN--------EVTWSSMVAGFVQN---- 214 (600)
Q Consensus 173 ~~~li~~y-------------~~~g~~~~A~~~f~~-------m~------~~d--------~~~~~~li~~~~~~---- 214 (600)
|....... .+.++++.|..++.. +. .|+ ...|...+.....+
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 123556777766553 11 111 35677666544333
Q ss_pred CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCchH-------HHHHHHHHHHHhCCCCchhHHHH
Q 007530 215 ELY----EEALILFRRAQVLGLEYNQFTISSVICACAG-------LAALI-------QGKQVHAVLCKTGFGSNMFAASS 276 (600)
Q Consensus 215 g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 276 (600)
++. ++++.+|++..... +-+...|......+.+ .|+++ +|..++...++.-.+.+..++..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 47888999888752 3356677777776664 78887 89999999987434567889999
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCC--c-CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHcc
Q 007530 277 LVDMYAKCGCVVDAYFVFSGIEE--K-NV-VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSA-CSHI 350 (600)
Q Consensus 277 l~~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~ 350 (600)
++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .|+ ...|...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 99999999999999999998753 3 33 58999999999999999999999999875 333 2333322222 3358
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC--HHHHHHHHHHHHHcCChHHH
Q 007530 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM----PFDAT--ASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a 424 (600)
|+.++|..+|+..++.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998654 235778999999999999999999999886 33343 56899999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 007530 425 EIAAKQLFGMEPD 437 (600)
Q Consensus 425 ~~~~~~~~~~~p~ 437 (600)
..+..++.+..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999998874
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=5.3e-16 Score=152.99 Aligned_cols=287 Identities=10% Similarity=-0.021 Sum_probs=214.8
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007530 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (600)
.+...+..+...+...|++++|+++|+++.+. .|.+...+..++.++...|+.++|..++..+++..+. +..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 57778889999999999999999999999987 4667778888889999999999999999999998644 77889999
Q ss_pred HHHHHHcC-CHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 177 LDVYAKCG-LISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 177 i~~y~~~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
...|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|++..... +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998654 357789999999999999999999999988753 22334454555556666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007530 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332 (600)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 332 (600)
++|...+..+.+.. + .+...|..+...+...|++++|+..|++..+..
T Consensus 176 ~~A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALSIA-P-------------------------------EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHTTC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-C-------------------------------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 66666666555432 2 244556666666666777777777776666531
Q ss_pred --------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC
Q 007530 333 --------LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA 403 (600)
Q Consensus 333 --------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 403 (600)
.+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ...|
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 12334677777888888888888888888876542 235667778888888888888888888876 4445
Q ss_pred -CHHHHHHHHHHH-HHcCCh
Q 007530 404 -TASMWGSLLASC-RNYRNL 421 (600)
Q Consensus 404 -~~~~~~~ll~~~-~~~~~~ 421 (600)
+...+..+..++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 466666666666 344443
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=7e-15 Score=153.90 Aligned_cols=352 Identities=13% Similarity=0.032 Sum_probs=298.3
Q ss_pred CCCcchHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCC
Q 007530 96 QRCIVSWNTIIGSYTT----NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA----KRDVFECKQLHVFALKAAMD 167 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~ 167 (600)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 3577788888888887 899999999999999876 66788888888888 899999999999999876
Q ss_pred CChhHHHHHHHHHHH----cCCHHHHHHHHccCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHH
Q 007530 168 RNVFVGTALLDVYAK----CGLISDASRVFESMPE-RNEVTWSSMVAGFVQ----NELYEEALILFRRAQVLGLEYNQFT 238 (600)
Q Consensus 168 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 238 (600)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 67788889999998 8999999999998765 467788889988988 889999999999998865 5677
Q ss_pred HHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHH
Q 007530 239 ISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMI 309 (600)
Q Consensus 239 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 309 (600)
+..+...+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777877 889999999999999876 56677888888887 7899999999998664 5677777888
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 007530 310 SGFSR----HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI-----GMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 310 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 380 (600)
..|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|+...+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 88887 899999999999998765 455666777777776 8999999999998753 3 445777788
Q ss_pred HHHHhcC---CHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--
Q 007530 381 DILGRAG---LIHEAYDLILNMPFDATASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA-- 451 (600)
Q Consensus 381 ~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 451 (600)
..|.+.| +.++|.++|++.-...++..+..|...+.. .+++++|...++++.+.. ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 789999999887334678899999999988 899999999999999864 56789999999998
Q ss_pred --cCChHHHHHHHHHhhhCC
Q 007530 452 --NRRWEEVARARKLIRDSE 469 (600)
Q Consensus 452 --~g~~~~a~~~~~~m~~~~ 469 (600)
.+++++|...++...+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999998766
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.9e-17 Score=162.79 Aligned_cols=277 Identities=11% Similarity=-0.021 Sum_probs=189.8
Q ss_pred CCHHHHHH-HHccCCC--C-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 184 GLISDASR-VFESMPE--R-----NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 184 g~~~~A~~-~f~~m~~--~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5543322 1 23345555556666666666666666655542 23444555555556666666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHH---------------HHHHHHhcCC
Q 007530 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNT---------------MISGFSRHAR 317 (600)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g~ 317 (600)
...+..+++.. +.+..++..+...|...|++++|...|+++.+ | +...+.. .+..+...|+
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 66666665554 33455556666666666666666666654432 1 1111110 2333348899
Q ss_pred hHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLH-PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (600)
+++|+..|+++.+.... ++..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999885322 147888899999999999999999999987542 335778999999999999999999999
Q ss_pred HcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-----------cchHHHHHHHHHhcCChHHHHHHHH
Q 007530 397 LNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-----------AGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 397 ~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
+++ ... .+..+|..+...+...|++++|...+++++++.|++ +..+..++.+|...|++++|..+++
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 886 223 457899999999999999999999999999988876 7889999999999999999998875
Q ss_pred H
Q 007530 464 L 464 (600)
Q Consensus 464 ~ 464 (600)
+
T Consensus 355 ~ 355 (368)
T 1fch_A 355 R 355 (368)
T ss_dssp T
T ss_pred H
Confidence 3
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=2.2e-14 Score=157.82 Aligned_cols=382 Identities=12% Similarity=0.063 Sum_probs=299.1
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 109 (600)
|+.-.+..++++...|.+.++.+++++++-.+ +..+....+.|+.+..+. +..+..+..+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 33345667889999999999999999998432 224557777788777766 4455555555554322 55578888
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
...|.+++|..+|++... .....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|
T Consensus 1060 i~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999998521 1222333333 667899998887754 2578899999999999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC
Q 007530 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269 (600)
Q Consensus 190 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 269 (600)
...|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 9999764 678889999999999999999999998776654 33333345888999999888644442 2 44
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
+...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 5566777999999999999999999985 58999999999999999999999976 366899999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH--cCChHHHH
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRN--YRNLELAE 425 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~--~~~~~~a~ 425 (600)
.|++..|......+ ..+...+..++..|.+.|.+++|..+++.. +.+| +...|..|...+.+ .++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999998876543 345667889999999999999999999766 4444 35677666666666 46777888
Q ss_pred HHHHHHhcCCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 007530 426 IAAKQLFGMEP-----DNAGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 426 ~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
+.|..-..+.| .+...|.-+...|.+.|.|+.|..
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88887777766 677789999999999999999984
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.5e-16 Score=159.87 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
...|..+...+.+.|++++|+..|+++.+. .|.+..++..+..++...|++++|...+..+++..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------ 129 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP------------ 129 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC------------
Confidence 344555555555555555555555555554 233444455555555555555555555555544432
Q ss_pred HHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHH---------------H
Q 007530 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF-TISS---------------V 242 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------l 242 (600)
.+..+|..+...|...|++++|+..|+++.... |+.. .+.. .
T Consensus 130 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 130 --------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CT
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHH
Confidence 234455555555555555555555555555432 2111 1100 1
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCCh
Q 007530 243 ICACAGLAALIQGKQVHAVLCKTGFGS-NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARS 318 (600)
Q Consensus 243 l~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 318 (600)
+..+...|++++|...+..+++..... +..++..+...|.+.|++++|...|+++.+ .+..+|+.+...|...|++
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 222225566666666666665543111 344555555555555555555555554331 2344555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
++|+..|+++.+.. +.+...+..+..++...|++++|...|+.+.
T Consensus 268 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 268 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555431 2234445555555555555555555555554
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.8e-18 Score=169.97 Aligned_cols=258 Identities=13% Similarity=0.085 Sum_probs=118.9
Q ss_pred HcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 4899999999999999999999965 35777999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 341 (600)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45578889999999999999999888864 77789999999999999999999999976 3788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 421 (600)
.+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.+
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence 8999999999999999999877 26779999999999999999997776665544544 44688889999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--CChHHHHHHHHHhhhCCCcc
Q 007530 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN--RRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~ 472 (600)
++|..+++..+.+++.....+..|+.+|++- ++..+..+.|. ..-+++|
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k 274 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPK 274 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcH
Confidence 9999999999999998888999998888755 44555555443 2234544
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.7e-15 Score=145.19 Aligned_cols=270 Identities=8% Similarity=-0.054 Sum_probs=210.1
Q ss_pred HHHHcCCHHHHHHHHccCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHH
Q 007530 179 VYAKCGLISDASRVFESMPERNE----VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 254 (600)
-....|++..|+..++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888877655332 2445567888888888888876644 135566777777788888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007530 255 GKQVHAVLCKTGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333 (600)
Q Consensus 255 a~~~~~~~~~~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 333 (600)
|.+.++.++..+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|+..|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888887764 44566777788999999999999999998 567889999999999999999999999999986
Q ss_pred CCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHH
Q 007530 334 HPNEQTY---ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMW 408 (600)
Q Consensus 334 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 408 (600)
.|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|+..+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664321 123344456699999999999998653 457889999999999999999999999986 3344 67889
Q ss_pred HHHHHHHHHcCChHH-HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 409 GSLLASCRNYRNLEL-AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
..++..+...|+.++ +.+.++++++++|+++. +.+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 999999999999876 67899999999999874 345566666666665443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.7e-16 Score=159.34 Aligned_cols=261 Identities=10% Similarity=-0.066 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557777777777777888887777777653 3356677777777777777888877777777764 445677777788
Q ss_pred HHHhhCCHHHHHHHHhcCCCcC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKN-------------VVLWNTMISGFSRHARSVEVMILFEKMQQAGLH-PNEQTYISVLS 345 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 345 (600)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888877765321 223344577888999999999999999886322 15788999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
.+...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|...|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999997643 346778999999999999999999999887 3334 58899999999999999999
Q ss_pred HHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 424 AEIAAKQLFGMEPD------------NAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 424 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
|...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997766 356788999999999999999887654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=2.8e-16 Score=157.82 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=125.6
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
+...|..+...+.+.|++++|+..|+++.+. .|.+..++..+..++...|++++|...++.+++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------- 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP----------- 130 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------
Confidence 3444666666666666666666666666554 233444555555555555555555555555544422
Q ss_pred HHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN-----------QFTISSVICAC 246 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~a~ 246 (600)
.+..+|..+...|.+.|++++|+..|+++.... |+ ...+..+...+
T Consensus 131 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 131 ---------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------------
T ss_pred ---------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHH
Confidence 234455555555555555555555555554421 21 11223345556
Q ss_pred HccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHH
Q 007530 247 AGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
...|++++|...+..+++.... .+..++..+...|.+.|++++|...|++.. ..+..+|+.+...|...|++++|+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666776666666665421 145556666666666666666666665543 234556666666666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
..|+++.+.. +.+..++..+..+|...|++++|...|+.+.+
T Consensus 268 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 268 EAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7776666642 22355666666666666777777766666653
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=3.3e-15 Score=155.51 Aligned_cols=385 Identities=11% Similarity=-0.013 Sum_probs=199.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCC-----------C-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHc-----CC
Q 007530 68 TLTSNILINFYSKCGLISGARKVFDEMP-----------Q-RCIVSWNTIIGSYTTNGREQEAVALFINMLRE-----GK 130 (600)
Q Consensus 68 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 130 (600)
...||.|...|...|+.++|++.|++.. . ....+|+.+...|...|++++|...|++..+. +.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4566667677777777777776665432 1 13356666666677777777777666665432 00
Q ss_pred CCC-ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH---HHcCCHHHHHHHHccCC---CCCH
Q 007530 131 TPY-SEFTVSSVLCACAA--KRDVFECKQLHVFALKAAMDRNVFVGTALLDVY---AKCGLISDASRVFESMP---ERNE 201 (600)
Q Consensus 131 ~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~g~~~~A~~~f~~m~---~~d~ 201 (600)
..+ ...++.....++.. .+++++|...|+.+++..+. +...+..+..++ ...++.++|.+.|++.. ..+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 011 12334333333322 34566666666666665432 344444444332 23344445555444332 1234
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 007530 202 VTWSSMVAGFVQ----NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277 (600)
Q Consensus 202 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (600)
.++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 444444433333 344555666665554432 2334455555556666666666666666665543 3344444445
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 357 (600)
...|...+....+... ..........+..++|+..|++..+.. +.+..++..+...+...|++++|+
T Consensus 288 g~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 4444322111110000 000000111233577888888887753 234456777888899999999999
Q ss_pred HHHHHHHHhcCCCccH--HHHHHHHH-HHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 358 SYFDLMVKQHNVLPNV--FHYSCMID-ILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
..|++..+. ...|.. ..+..+.. .+...|+.++|...|++. .+.|+...+... .+.+..++++.++
T Consensus 355 ~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHH
Confidence 999988743 222221 12223322 234678999999998875 455665433322 3445677888888
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEE
Q 007530 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478 (600)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 478 (600)
.+|+++.++..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999999999999999988766433333444
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=2.6e-13 Score=149.49 Aligned_cols=365 Identities=11% Similarity=0.055 Sum_probs=284.9
Q ss_pred hHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHccCC-CC-----CcchHHHHHHHHHcCCChhHHHHHH
Q 007530 51 RGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGARKVFDEMP-QR-----CIVSWNTIIGSYTTNGREQEAVALF 122 (600)
Q Consensus 51 ~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~ 122 (600)
.=+++.++.+...+ ..|+.--...+..|...|.+.+|.++++++. +| +...-|.++.+..+. +..+..+..
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 34456666555443 2345555777888999999999999999875 22 234566788777777 556666666
Q ss_pred HHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHH
Q 007530 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202 (600)
Q Consensus 123 ~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~ 202 (600)
.+... .....+...|...|.+++|..+|++.. ......+.++ -..|++++|.++.++.. +..
T Consensus 1045 ~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~ 1106 (1630)
T 1xi4_A 1045 NRLDN--------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPA 1106 (1630)
T ss_pred HHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHH
Confidence 55532 224447788889999999999998852 1222223332 37889999999998774 467
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++..|+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 8999999999999999999999663 467788899999999999999999999988865 44444556999999
Q ss_pred hhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
+.+++++..... ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++
T Consensus 1179 Kl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1179 KTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred hhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999655443 4567778888999999999999999999985 4899999999999999999999987
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
.. +..+|..+..++...|.+..|......+ ..++..+..++..|...|.+++|..+++..++++|.+...+
T Consensus 1247 A~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1247 AN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred hC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 62 4578888889999999999999887754 34566677899999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CChHHHHHHHH
Q 007530 443 LLLSNIYAAN--RRWEEVARARK 463 (600)
Q Consensus 443 ~~l~~~~~~~--g~~~~a~~~~~ 463 (600)
.-|+.+|++- ++..++.+.|.
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 8888888764 45555555544
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=7.5e-16 Score=151.70 Aligned_cols=273 Identities=12% Similarity=0.001 Sum_probs=190.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 246 (600)
...+..+...+.+.|++++|..+|+++.+ .+..+|..+...+.+.|++++|+..|+++.... +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34455666667777777777777766542 355566666677777777777777777666542 23455566666666
Q ss_pred HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHH--HHHhcCChHHHHHH
Q 007530 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS--GFSRHARSVEVMIL 324 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l 324 (600)
...|++++|...+..+.+.. +.+...+..+.... ++......+.. .+...|++++|+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 66666666666666666543 11222221111000 00111111212 26677888999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-
Q 007530 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD- 402 (600)
Q Consensus 325 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~- 402 (600)
++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99988763 3367788888889999999999999999987542 335678889999999999999999999876 223
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD------------NAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
.+..+|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++++|..+++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45788999999999999999999999999998888 6788999999999999999999988644
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2.2e-15 Score=145.83 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=202.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQ--FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g 285 (600)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999887643 34543 3556678899999999999876544 24667888899999999999
Q ss_pred CHHHHHHHHhcCC----Cc-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 286 CVVDAYFVFSGIE----EK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 286 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23 566777788899999999999999987 457788888999999999999999999
Q ss_pred HHHHHhcCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 361 DLMVKQHNVLPNVF---HYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 361 ~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
+.+.+. .|+.. ...+++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999754 35432 2233445555669999999999988 234578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHH-HHHHHHHhhhCC
Q 007530 436 PDNAGNHLLLSNIYAANRRWEE-VARARKLIRDSE 469 (600)
Q Consensus 436 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 469 (600)
|+++.++..++.++...|++++ +.++++++.+.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 568888887644
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=174.11 Aligned_cols=151 Identities=7% Similarity=0.027 Sum_probs=126.8
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHccCC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007530 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMP-------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238 (600)
Q Consensus 166 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 238 (600)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34345689999999999999999999997753 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc-----CHhHHHHHHHHH
Q 007530 239 ISSVICACAGLAAL-IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-----NVVLWNTMISGF 312 (600)
Q Consensus 239 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 312 (600)
|+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 789999999999999999999999999988887777777666555431 123333444555
Q ss_pred HhcC
Q 007530 313 SRHA 316 (600)
Q Consensus 313 ~~~g 316 (600)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.1e-14 Score=149.52 Aligned_cols=385 Identities=11% Similarity=-0.018 Sum_probs=237.5
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhcCChHHHHHHHccCCC----
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGM-----G---LNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---- 96 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 96 (600)
.......|+.+-..+...|+.++|.+.+...++. + .+....+|+.+...|...|++++|...|++..+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3334567888888889999999999999887653 1 123356789999999999999999998876531
Q ss_pred ------C-CcchHHHHHHHHHc--CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH---HhcCCChHHHHHHHHHHHHh
Q 007530 97 ------R-CIVSWNTIIGSYTT--NGREQEAVALFINMLREGKTPYSEFTVSSVLCA---CAAKRDVFECKQLHVFALKA 164 (600)
Q Consensus 97 ------~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~ 164 (600)
+ ...+++.+..++.. .+++++|++.|++..+.. |.+...+..+..+ +...++.++|.+.+..+++.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 23456655555544 457999999999999863 4455555555444 45567888999999999988
Q ss_pred CCCCChhHHHHHHHHHHHc----CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CH
Q 007530 165 AMDRNVFVGTALLDVYAKC----GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY-NQ 236 (600)
Q Consensus 165 g~~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 236 (600)
.+. +..++..+...+.+. |++++|.+.|++... .+..+|..+...|.+.|++++|+..|++..+. .| +.
T Consensus 205 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 281 (472)
T 4g1t_A 205 NPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA 281 (472)
T ss_dssp CSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred CCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH
Confidence 644 566666666555554 677889999987543 46788999999999999999999999998875 34 44
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHH
Q 007530 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFS 313 (600)
Q Consensus 237 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 313 (600)
.++..+...+...+....+ .. ...........+..+.|...|+... ..+..+|..+...|.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 5555555444322111100 00 0001111112233556666666544 235567888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQ--TYISVLS-ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 390 (600)
..|++++|++.|++..+....|... .+..+.. .....|+.++|+..|.+.++ +.|+........ .
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------D 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------H
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------H
Confidence 9999999999999998864333221 2222222 24577999999999998874 355533322222 2
Q ss_pred HHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 391 EAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 391 ~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
.+.+++++. . .+.+..+|..|...+...|++++|...+++++++.|.+|.+...++
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 233333332 1 1345778999999999999999999999999999998887665544
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=174.31 Aligned_cols=133 Identities=8% Similarity=0.063 Sum_probs=120.9
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHccCC-------CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh
Q 007530 64 LNNDTLTSNILINFYSKCGLISGARKVFDEMP-------QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136 (600)
Q Consensus 64 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~ 136 (600)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.| +.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH
Confidence 33446789999999999999999999997753 5899999999999999999999999999999999 999999
Q ss_pred hHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 137 TVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 137 t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
||+++|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++.+.+++..+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999999999985 7899999999999999999999999999888877777777766554
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=1.3e-14 Score=142.73 Aligned_cols=262 Identities=12% Similarity=-0.011 Sum_probs=197.9
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGS 108 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 108 (600)
+...+......+...|+++.|..+++.+++.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44456667778888999999999999998875 55778888889999999999999999987643 467788899999
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHHhCCCCChhHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSV--------------LC-ACAAKRDVFECKQLHVFALKAAMDRNVFVG 173 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 173 (600)
+...|++++|++.|+++.+.. +.+...+..+ .. .+...|++++|...+..+++..+. +..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999998863 3344444333 22 366677888888888888887544 67788
Q ss_pred HHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 174 TALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250 (600)
Q Consensus 174 ~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 250 (600)
..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 8888888888888888888887643 356778888888888888888888888877653 335667777777888888
Q ss_pred chHHHHHHHHHHHHhCCCC-----------chhHHHHHHHHHHhhCCHHHHHHHHhcCC
Q 007530 251 ALIQGKQVHAVLCKTGFGS-----------NMFAASSLVDMYAKCGCVVDAYFVFSGIE 298 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 298 (600)
++++|...+..+.+..... +..++..+...|.+.|+.++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888777654221 45666777777777777777777776544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.7e-13 Score=129.67 Aligned_cols=228 Identities=8% Similarity=-0.018 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC--CCchhHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLV 278 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 278 (600)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++... .++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------- 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY------- 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-------
Confidence 3456666677777777777777777766655 5555666666666666666666666665554310 0000
Q ss_pred HHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
......|..+...|...|++++|+..|++.... .|+. ..+...|++++|..
T Consensus 76 --------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 76 --------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 001456777777888888888888888888874 4553 33556678899999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
.++.+.+. .+.+...+..+...+...|++++|...+++. .. +.+..+|..+...+...|++++|...++++++..|
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 99888642 1235667888888899999999999998876 22 34578899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+++..+..++.+|...|++++|...++...+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.2e-13 Score=130.67 Aligned_cols=233 Identities=11% Similarity=-0.023 Sum_probs=151.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLG--LEYN----QFTISS 241 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 241 (600)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..... ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999987533 678899999999999999999999999987642 1222 467777
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHH
Q 007530 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 321 (600)
+...+...|++++|...+..+.+.. |+ ...+.+.|++ ++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~-------------------------------~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNA-------------------------------EKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHH-------------------------------HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHH-------------------------------HHH
Confidence 7788888888888888888887754 22 1233344444 445
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-
Q 007530 322 MILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM- 399 (600)
Q Consensus 322 ~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 399 (600)
+..++++... .| +...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++.
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555544442 22 22344444455555555555555555554322 223445555555555666666665555544
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC------CCCcchHHHHH
Q 007530 400 PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGME------PDNAGNHLLLS 446 (600)
Q Consensus 400 ~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 446 (600)
.. +.+...|..+...+...|++++|...+++++++. |++...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 11 2235666667777777777777777777777766 66555444443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1.8e-13 Score=126.33 Aligned_cols=195 Identities=12% Similarity=-0.006 Sum_probs=151.6
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 344 (600)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777788888888888888888886543 467788888888999999999999999988853 23466778888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHH
Q 007530 345 SACSHI-----------GMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSL 411 (600)
Q Consensus 345 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 411 (600)
..+... |++++|+..++..++. .| +...+..+..+|...|++++|...|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999754 34 5678888999999999999999999886 212778899999
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 412 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
...+...|++++|...++++++++|+++..+..++.++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=5e-13 Score=137.86 Aligned_cols=183 Identities=11% Similarity=0.092 Sum_probs=105.6
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHccCCCCCcchHHHHHHHHHcCC--
Q 007530 39 TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI---SGARKVFDEMPQRCIVSWNTIIGSYTTNG-- 113 (600)
Q Consensus 39 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 113 (600)
+.....+.|+++.|.+++....+.| ++..+..|-.+|...|+. ++|.+.|+...+.+...+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566788999999999998877 233445566667777877 89999999887777778888888666655
Q ss_pred ---ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC---
Q 007530 114 ---REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF---ECKQLHVFALKAAMDRNVFVGTALLDVYAKCG--- 184 (600)
Q Consensus 114 ---~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--- 184 (600)
++++|+..|++..+.| . ...+..+...+...+... .+.+.+....+.| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g-~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANG-E---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT-C---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7789999999998877 2 236666666666655433 3444444444444 4556667777777777
Q ss_pred -CHHHHHHHHccCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcC
Q 007530 185 -LISDASRVFESMPERNEVTWSSMVAGFVQNE---LYEEALILFRRAQVLG 231 (600)
Q Consensus 185 -~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g 231 (600)
..+.+..+++.....++.++..|...|.+.| +.++|++.|++..+.|
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 4455555666666656667777777777777 7777777777766655
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=3.5e-13 Score=128.93 Aligned_cols=241 Identities=8% Similarity=-0.119 Sum_probs=174.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH
Q 007530 213 QNELYEEALILFRRAQVLGLE--Y-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 289 (600)
..|++++|+..|+++...... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777654211 1 34556666667777777777777777777664 4456677777778888888888
Q ss_pred HHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 007530 290 AYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 290 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 366 (600)
|...|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888776653 35678888888899999999999999999875 455555555555667779999999999887654
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 367 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
. +++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 3 3333334 3667777888889999888876 32232 578889999999999999999999999999997654
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 007530 441 NHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
..+.++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999987765
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=8.5e-13 Score=121.70 Aligned_cols=195 Identities=12% Similarity=-0.049 Sum_probs=127.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007530 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (600)
++...|..+...+.+.|++++|+..|++.++. -|.+...+..+..++...|++++|...++.+++..+. +...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 45567777777888888888888888888776 3556777777778888888888888888888877543 56677777
Q ss_pred HHHHHHc-----------CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007530 177 LDVYAKC-----------GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242 (600)
Q Consensus 177 i~~y~~~-----------g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 242 (600)
...|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 7777777 777777777766543 245667777777777777777777777776655 556666666
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 243 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
..++...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666777777777777777766654 345555666666666666666666665543
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=8.7e-13 Score=126.06 Aligned_cols=254 Identities=10% Similarity=-0.029 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN--QFTISSVICA 245 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a 245 (600)
.+.......|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++....+..|+ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566777777888888877776543 2455677777777778888888888777776332222 2236666677
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHH
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777654 33455666666677777777777776666553 23445555552222334666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGM---VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
+.|+++.+.. +.+...+..+...+...|+ .++|...++.+.+...-.|+.. -.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~---------------------- 218 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD---------------------- 218 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH----------------------
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH----------------------
Confidence 6666665531 1223444444444444444 4445555544433211112110 00
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 400 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
....+|..+...+...|++++|...++++++++|+++.....+..+....
T Consensus 219 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 219 ---ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 01245667777888889999999999999999999887776666554433
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.5e-12 Score=124.55 Aligned_cols=241 Identities=10% Similarity=-0.076 Sum_probs=160.8
Q ss_pred cCCChhHHHHHHHHHHHcCCC--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 111 TNGREQEAVALFINMLREGKT--PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 111 ~~g~~~~A~~~~~~m~~~g~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
..|++++|+..|+++.+.... +.+..++..+...+...|++++|...+..+++..+. +..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875311 124566777888888888888888888888887543 67788888888888888888
Q ss_pred HHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 189 ASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 189 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887654 35778888888999999999999999888874 455444444555556678888888888777765
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN-------VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
. +++...+. ++..+...++.++|...+....+.+ ...|..+...|...|++++|+..|++.... .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 4 33333333 5666666667777777776655422 345566666666666666666666666653 3322
Q ss_pred HHHHHHHHHHccCCHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 111123344445555554443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=4.3e-12 Score=119.73 Aligned_cols=197 Identities=10% Similarity=-0.077 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566666777777777777777776542 356677778888888888888888888887753 33566777788888
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a 424 (600)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888864 23344 5567777888888888888888888776 222 3577888888888888999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999888888888888888888889999999998888887643
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=8.7e-12 Score=117.59 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (600)
...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 5677888888888888888888888877653 2345556666666666666666666666665543 1
Q ss_pred HHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 007530 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
.+...|..+...|...|++++|+++|+++...+..|+ ...+..+...+...|++++|...
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2344555555566666666666666666655333343 44556666667777777777777
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 360 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
++.+.+.. +.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.++|...++++++..|+
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 77766432 224566777777777778888887777765 222 35667777777888888888888888888888888
Q ss_pred CcchH
Q 007530 438 NAGNH 442 (600)
Q Consensus 438 ~~~~~ 442 (600)
++...
T Consensus 242 ~~~~~ 246 (252)
T 2ho1_A 242 SLEYQ 246 (252)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 76543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=6e-12 Score=116.16 Aligned_cols=197 Identities=11% Similarity=-0.040 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555666666666666666655432 345566667777777777777777777776642 3355666677777
Q ss_pred HHcc-CCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChH
Q 007530 347 CSHI-GMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLE 422 (600)
Q Consensus 347 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~ 422 (600)
+... |++++|...++.+.+ .+..| +...+..+...+...|++++|.+.++++ ... .+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777764 22333 3556677777777777777777777665 222 34667777777777788888
Q ss_pred HHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 423 LAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 423 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887777 77777777777777888888888777776543
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=6.7e-12 Score=125.55 Aligned_cols=246 Identities=13% Similarity=0.044 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA-LIQGKQVHAVLCKTGFGSNMFAASSLV 278 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 278 (600)
+...|+.+...+.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...+..+++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567778888888888888888888887642 2245667777777888886 888888888888875 55677888888
Q ss_pred HHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH-IGMVE 354 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 354 (600)
..|.+.|++++|+..|+++.+ .+...|..+...+...|++++|+..|+++++.. +-+...|..+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888887763 567888888888999999999999999998863 2356778888888887 56656
Q ss_pred HH-----HHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcC--CHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcC------
Q 007530 355 KG-----KSYFDLMVKQHNVLP-NVFHYSCMIDILGRAG--LIHEAYDLILNMPFDAT-ASMWGSLLASCRNYR------ 419 (600)
Q Consensus 355 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~------ 419 (600)
+| +..++..++. .| +...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4778877643 34 5667888888888877 58888888887744454 677788888887763
Q ss_pred ---ChHHHHHHHHHH-hcCCCCCcchHHHHHHHHHh
Q 007530 420 ---NLELAEIAAKQL-FGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 420 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 451 (600)
.+++|..+++++ ++++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999988888877776643
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=2.8e-12 Score=132.24 Aligned_cols=342 Identities=11% Similarity=-0.005 Sum_probs=190.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV---FECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...+....+. +...+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 4556667788888888888887776 233344444445556666 7777777777654 4455566666454
Q ss_pred HcC-----CHHHHHHHHccCCCC-CHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 182 KCG-----LISDASRVFESMPER-NEVTWSSMVAGFVQNELYEE---ALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 182 ~~g-----~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
..| +.++|.+.|++..++ +...+..|...|...+..++ +.+.+.+....|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 444 667777777765543 44466667777766654333 3444444444332 33444455555555544
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC---CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhc----CChHHHH
Q 007530 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG---CVVDAYFVFSGIEE---KNVVLWNTMISGFSRH----ARSVEVM 322 (600)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 322 (600)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 443333333333222333446677777777777 77777777776543 3334445555555443 5777788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-----CHHHHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSA-C--SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG-----LIHEAYD 394 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 394 (600)
..|++.. .| +...+..+... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8777766 33 33344444443 3 456777888888877753 23 4455566666665 44 7778888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhh
Q 007530 395 LILNMPFDATASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA----NRRWEEVARARKLIR 466 (600)
Q Consensus 395 ~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 466 (600)
+|++.- ..++..+..|...|.. ..+.++|...++++.+.. ++.....|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 887776 5566666666666655 337777888777776643 45567777777764 347777777777776
Q ss_pred hCC
Q 007530 467 DSE 469 (600)
Q Consensus 467 ~~~ 469 (600)
+.|
T Consensus 386 ~~g 388 (452)
T 3e4b_A 386 AQD 388 (452)
T ss_dssp TTC
T ss_pred HCC
Confidence 665
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=2e-11 Score=116.79 Aligned_cols=225 Identities=12% Similarity=-0.036 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAAS 275 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (600)
+..++..+...|.+.|++++|+..|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666665552 233444445555555 555555555555555543 344444
Q ss_pred HHHHHHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 276 SLVDMYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMISGFSR----HARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 276 ~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44455544 4555555444443322 234444445555555 555555555555555543 33344444444
Q ss_pred HHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-
Q 007530 347 CSH----IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN- 417 (600)
Q Consensus 347 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~- 417 (600)
+.. .+++++|...|+...+. + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 444 55555565555555432 1 23344444455555 55555555555443111123444444444444
Q ss_pred ---cCChHHHHHHHHHHhcCCCC
Q 007530 418 ---YRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 418 ---~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+++++|...++++.++.|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 45555555555555554443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=1.6e-12 Score=121.77 Aligned_cols=212 Identities=12% Similarity=0.032 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (600)
..+|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3445555566666666666666666655431 2233444444444444444444444444444332
Q ss_pred HHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
..+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1234445555555555666666666666655542 234455555566666666666666666
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 361 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
+.+.+.. +.+...+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|...++++++++|++
T Consensus 149 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 6665332 224445556666666666666666666554 11 2345566666667777777777777777777777766
Q ss_pred cchHHHHHHH
Q 007530 439 AGNHLLLSNI 448 (600)
Q Consensus 439 ~~~~~~l~~~ 448 (600)
+..+..+..+
T Consensus 227 ~~~~~~~~~l 236 (243)
T 2q7f_A 227 MLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 6555544433
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=1.6e-11 Score=117.26 Aligned_cols=229 Identities=7% Similarity=-0.106 Sum_probs=185.3
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--CC----HHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RN----EVTWSSM 207 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d----~~~~~~l 207 (600)
|...+......+...|++++|...+..+++..+. +..++..+...|.+.|++++|...|++..+ ++ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3445667788899999999999999999998643 666889999999999999999999987654 22 3358999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhhCC
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV-DMYAKCGC 286 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~y~~~g~ 286 (600)
...|...|++++|+..|++..... +.+...+..+...+...|++++|...+..+++.. +.+..++..+. ..|. .++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 999999999999999999998753 3356788899999999999999999999998873 55677787787 5554 569
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR---SVEVMILFEKMQQAG-LHPN------EQTYISVLSACSHIGMV 353 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~ 353 (600)
+++|.+.|+++.+ .+...|..+...+...|+ .++|+..+++..+.. -.|+ ...|..+...|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998763 356788888888888888 888999999987742 1243 24677788888889999
Q ss_pred HHHHHHHHHHHHh
Q 007530 354 EKGKSYFDLMVKQ 366 (600)
Q Consensus 354 ~~a~~~~~~~~~~ 366 (600)
++|.+.|+++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.5e-11 Score=113.39 Aligned_cols=211 Identities=11% Similarity=-0.009 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
+...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 45567777777777777777777777776542 2234455555555566666666666655555432
Q ss_pred HHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 357 (600)
..+...|..+...|... |++++|+..++++.+.+..|+ ...+..+...+...|++++|.
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 12344556666666677 777777777777766333343 455666777777777888887
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-D-ATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
..++.+.+.. +.+...+..+...+.+.|++++|.+.+++. .. + .+...+..+...+...|+.+.+...++.+.+.
T Consensus 134 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777776432 224566777777788888888888777765 22 2 35666777777777888888888888888888
Q ss_pred CCCCcchHHHH
Q 007530 435 EPDNAGNHLLL 445 (600)
Q Consensus 435 ~p~~~~~~~~l 445 (600)
.|+++.....+
T Consensus 212 ~p~~~~~~~~l 222 (225)
T 2vq2_A 212 FPYSEELQTVL 222 (225)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHh
Confidence 88877654443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=3.3e-11 Score=115.31 Aligned_cols=223 Identities=9% Similarity=-0.028 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHH
Q 007530 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMI 309 (600)
Q Consensus 235 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 309 (600)
+..++..+...+...|++++|...+....+. .+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566777888889999999999999999983 356778889999999 9999999999997754 4778899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 310 SGFSR----HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH----IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 310 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999753 3 5567778888
Q ss_pred HHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--
Q 007530 382 ILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA-- 451 (600)
Q Consensus 382 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 451 (600)
.|.. .+++++|...+++.-...+...+..+...+.. .+++++|...++++++.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999887323467888889999999 9999999999999999876 5688899999999
Q ss_pred --cCChHHHHHHHHHhhhCC
Q 007530 452 --NRRWEEVARARKLIRDSE 469 (600)
Q Consensus 452 --~g~~~~a~~~~~~m~~~~ 469 (600)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999988765
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=3.7e-12 Score=129.24 Aligned_cols=195 Identities=10% Similarity=0.010 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHAR--------------------SVEVMI 323 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 323 (600)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444555555555555555444332 11 2355556666666666 677777
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHH
Q 007530 324 LFEKMQQA----GLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 324 l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 394 (600)
.+++.... +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 76665432 11111 235666777777888888888888777543221122 3367777788888888888888
Q ss_pred HHHcC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHH
Q 007530 395 LILNM----PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 395 ~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87765 11112 4567778888888899999999888888754332 4577788999999999999999
Q ss_pred HHHHhhh
Q 007530 461 ARKLIRD 467 (600)
Q Consensus 461 ~~~~m~~ 467 (600)
.++...+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=3.1e-12 Score=130.29 Aligned_cols=197 Identities=9% Similarity=-0.042 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCC---------cCHhHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE---------KNVVLWNTMISGFSRHAR-----------------SVEVMILF 325 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~l~ 325 (600)
.++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3344444555555555555555444321 123355555666666666 66666666
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHH
Q 007530 326 EKMQQA----GLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYDLI 396 (600)
Q Consensus 326 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 396 (600)
++..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 655432 1111 1235666667777778888888777776543211111 235667777788888888887777
Q ss_pred HcC----CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChHHHHHHH
Q 007530 397 LNM----PFDA----TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD------NAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 397 ~~m----~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
++. +... ...++..+...+...|++++|...+++++++.+. ....+..++.+|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 655 1111 1456777888888888899998888888875433 2347788999999999999999999
Q ss_pred HHhhhC
Q 007530 463 KLIRDS 468 (600)
Q Consensus 463 ~~m~~~ 468 (600)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=3e-12 Score=119.93 Aligned_cols=197 Identities=11% Similarity=0.062 Sum_probs=154.3
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677778888888888888877643 467788889999999999999999999998863 3467888889999
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a 424 (600)
+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999997643 346778889999999999999999999887 22 34678899999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++++++..|+++..+..++.+|...|++++|...++.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987643
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=1.2e-09 Score=116.73 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=35.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCC---hhHHHHHHHHHHHcCCCCCChhhHH
Q 007530 66 NDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGR---EQEAVALFINMLREGKTPYSEFTVS 139 (600)
Q Consensus 66 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~p~~~t~~ 139 (600)
.|...|..++..+.+.+.++.++.+|+.+.. .....|..-+..-.+.|. ++.+..+|++.+.....+|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4455555555555555555555555554432 233344444444444444 5555555555544310124444444
Q ss_pred HHHH
Q 007530 140 SVLC 143 (600)
Q Consensus 140 ~ll~ 143 (600)
.-+.
T Consensus 144 ~Yl~ 147 (679)
T 4e6h_A 144 SYIT 147 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=3.6e-12 Score=125.33 Aligned_cols=260 Identities=11% Similarity=0.007 Sum_probs=153.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYN----QFTISSVICACAGLAALIQGKQVHAVLCKT----GFG-SNMFAASSLV 278 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 278 (600)
...+...|++++|+..|++..... +.+ ...+..+...+...|++++|...+..+++. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444444444444444444331 111 123334444444444444444444443321 111 1233445555
Q ss_pred HHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHAR--------------------SVEVMILFEKMQ 329 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 329 (600)
..|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555666655555554331 11 2355566666666666 677777766654
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHcC-
Q 007530 330 QA----GLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP----NVFHYSCMIDILGRAGLIHEAYDLILNM- 399 (600)
Q Consensus 330 ~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m- 399 (600)
.. +..| ...++..+...+...|++++|...++...+...-.+ ....+..+...|...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1111 123566667777788888888888877654321111 1336777778888888888888887765
Q ss_pred ---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 400 ---PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 400 ---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11112 4567778888888999999999998888754432 3477789999999999999999998876
Q ss_pred hC
Q 007530 467 DS 468 (600)
Q Consensus 467 ~~ 468 (600)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=2.4e-11 Score=121.50 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC-HHHHHHHHhcCCC---cCHhHHHHHHHHH
Q 007530 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC-VVDAYFVFSGIEE---KNVVLWNTMISGF 312 (600)
Q Consensus 237 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 312 (600)
..|..+..++...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778889999999999999999986 5678899999999999997 9999999998864 5778999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh-cCCHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR-AGLIHE 391 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~ 391 (600)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999863 3367789999999999999999999999998643 2367789999999999 666577
Q ss_pred H-----HHHHHcC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---------
Q 007530 392 A-----YDLILNM-PFDA-TASMWGSLLASCRNYR--NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR--------- 453 (600)
Q Consensus 392 A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 453 (600)
| ++.+++. ...| +...|..+...+...| ++++|...+.++ +.+|+++..+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667665 3344 5789999999988887 689999999998 999999999999999999875
Q ss_pred ChHHHHHHHHHh-hhCC
Q 007530 454 RWEEVARARKLI-RDSE 469 (600)
Q Consensus 454 ~~~~a~~~~~~m-~~~~ 469 (600)
..++|.++++.+ .+.+
T Consensus 333 ~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 333 ILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=9.9e-12 Score=126.06 Aligned_cols=291 Identities=10% Similarity=-0.020 Sum_probs=165.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHccCCC---------CCHHHHH
Q 007530 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRN---VFVGTALLDVYAKCGLISDASRVFESMPE---------RNEVTWS 205 (600)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------~d~~~~~ 205 (600)
+......+...|++++|...++.+++..+... ..++..+...|...|++++|...|++... ....+|.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33344444444445555544444444422110 13444555555555555555555544321 1234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCc--------------------hHHHHHHHH
Q 007530 206 SMVAGFVQNELYEEALILFRRAQVLGL-EYN----QFTISSVICACAGLAA--------------------LIQGKQVHA 260 (600)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~--------------------~~~a~~~~~ 260 (600)
.+...|...|++++|+..+++...... .++ ..++..+...+...|+ ++.|...+.
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 677777777777777777776654210 011 2345555556666666 555555554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPN- 336 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~- 336 (600)
..++. +..... ....+|..+...|...|++++|+..+++..+.. -.++
T Consensus 172 ~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 172 ENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp HHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 44331 111111 112345556666666677777777666655421 0112
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC-
Q 007530 337 ---EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYDLILNM----PFDAT- 404 (600)
Q Consensus 337 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~- 404 (600)
..++..+...+...|++++|...++...+...-.++ ..++..+...|...|++++|...+++. +..++
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 235666677777778888887777776532211111 456677777788888888887777665 11122
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChH
Q 007530 405 ---ASMWGSLLASCRNYRNLELAEIAAKQLFGMEP------DNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 405 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 456 (600)
..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 45777888888889999999999999887432 23456677888887777654
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=8.3e-10 Score=117.85 Aligned_cols=404 Identities=9% Similarity=-0.019 Sum_probs=234.0
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHccCCC-----CCcc
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKVFDEMPQ-----RCIV 100 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~~~~-----~~~~ 100 (600)
.+-|..+|..++..+...+.+..++.+++.++.. ++.....|...+..-.+.|. ++.+..+|++... |++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 3457788999999999999999999999999976 57788889999999888898 9999999997652 7888
Q ss_pred hHHHHHHHHHcCCCh--------hHHHHHHHHHHHc-CCC-CC-ChhhHHHHHHHHhc---------CCChHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGRE--------QEAVALFINMLRE-GKT-PY-SEFTVSSVLCACAA---------KRDVFECKQLHVF 160 (600)
Q Consensus 101 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~~-~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~ 160 (600)
.|..-+.-..+.++. +...++|+..+.. | . .| +...|...+..... .++++.++.+|..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG-~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA-IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT-TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 899888776665543 2344788776654 5 4 34 34567666665432 2346778888888
Q ss_pred HHHhCCCCChhHHHHHHHHHHH-------------cCCHHHHHHHHcc-------CCC--CC------------------
Q 007530 161 ALKAAMDRNVFVGTALLDVYAK-------------CGLISDASRVFES-------MPE--RN------------------ 200 (600)
Q Consensus 161 ~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~-------m~~--~d------------------ 200 (600)
++......-..+|......-.. ..+++.|...+.+ +.. |.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8853222122344322221111 0112233333332 111 00
Q ss_pred --HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH-HHHHHHHHhCCCCc
Q 007530 201 --EVTWSSMVAGFVQNE-------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK-QVHAVLCKTGFGSN 270 (600)
Q Consensus 201 --~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~-~~~~~~~~~~~~~~ 270 (600)
...|...+.---.++ ..+.+..+|++.... .+-+...|.....-+...|+.+.|. .++...+.. .+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 123444444322222 122344556555543 2234455555555555566666664 677666653 2445
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC-------------c------------CHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-------------K------------NVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
..++-.++...-+.|+++.|.++|+++.+ | ....|-..+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55566666666667777777766665542 1 1124656666555666666777777
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC
Q 007530 326 EKMQQA-GLHPNEQTYISVLSACSH-IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD 402 (600)
Q Consensus 326 ~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 402 (600)
.+..+. +. +....|......-.+ .++.+.|.++|+..++.++ -+...+...++.....|+.+.|..+|++. ...
T Consensus 458 ~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 458 GKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 666654 21 112222221111112 2346667777766665432 23445556666666666677777776654 112
Q ss_pred C----CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 403 A----TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 403 p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
| ....|..++..-..+|+.+.+..+.+++.+..|+++
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 2 235666666666666777777777777766666654
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=1.2e-11 Score=125.98 Aligned_cols=134 Identities=8% Similarity=-0.056 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC----ccHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN----EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL----PNVF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----p~~~ 374 (600)
+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555556666666666655544210 011 1255566666667777777777766654322111 1144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-------PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 5666777777777777777777654 1111 1346677778888888888888888888876553
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=5.3e-11 Score=106.27 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=127.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 380 (600)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45667777777777888888888888877742 2245667777777888888888888888776432 23455666677
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 007530 381 DILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 458 (600)
..+...+++++|.+.+.+. ... .+...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888887765 222 35678888888888899999999999999999999888899999999999999999
Q ss_pred HHHHHHhhhCC
Q 007530 459 ARARKLIRDSE 469 (600)
Q Consensus 459 ~~~~~~m~~~~ 469 (600)
.+.+++..+.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99988877643
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=5.3e-12 Score=130.99 Aligned_cols=193 Identities=9% Similarity=-0.014 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhhCCH-HHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCV-VDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 344 (600)
.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3455555566666666666 66666666543 235677888888888889999999999988874 57778888888
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------CCHHHHHHHHHcC-CCCC---
Q 007530 345 SACSHI---------GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA--------GLIHEAYDLILNM-PFDA--- 403 (600)
Q Consensus 345 ~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p--- 403 (600)
..+... |++++|.+.|+++.+.. +.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 888888 99999999999987543 23567888888888888 8899999999887 3345
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 404 -TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 404 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
+...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+..+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68899999999999999999999999999999999999999999999999999998765443
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=2.1e-11 Score=119.87 Aligned_cols=134 Identities=12% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN----EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP----NVF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 374 (600)
.+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444444555555555555554433200 011 12455555556666666666666665543211111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-------PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5566666666777777776666554 1111 1346667777788888888888888888876654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=6.2e-10 Score=108.47 Aligned_cols=218 Identities=10% Similarity=0.044 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007530 218 EEALILFRRAQVLGLEYNQFTISSVICACA-------GLAAL-------IQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283 (600)
Q Consensus 218 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 283 (600)
++|+.+|++..... +-+...|......+. ..|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777666531 234445555544443 24554 6777777777763224455677777777777
Q ss_pred hCCHHHHHHHHhcCCC--c-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHH
Q 007530 284 CGCVVDAYFVFSGIEE--K-NVV-LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC-SHIGMVEKGKS 358 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 358 (600)
.|++++|.++|++..+ | +.. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776553 2 233 67777777777888888888888877643 22333443333222 23578888888
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P---FDA--TASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
+|+..++..+ -+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8887765432 25567777777788888888888888765 1 244 35677777777777888888888888888
Q ss_pred cCCCCCc
Q 007530 433 GMEPDNA 439 (600)
Q Consensus 433 ~~~p~~~ 439 (600)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777654
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=120.81 Aligned_cols=242 Identities=12% Similarity=0.019 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh------CC
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVL-------GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT------GF 267 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~ 267 (600)
..+|..+...|...|++++|+.+|+++... ..+.....+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666777777777777777777776542 11223345555666666667777776666666543 11
Q ss_pred -CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----------cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 007530 268 -GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-----------KNVVLWNTMISGFSRHARSVEVMILFEKMQQA---- 331 (600)
Q Consensus 268 -~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 331 (600)
+....++..+...|...|++++|...|++..+ .....|..+...|...|++++|+++|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12344455555666666666666655554321 01233444444555555555555555554432
Q ss_pred --CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 007530 332 --GLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQH------NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402 (600)
Q Consensus 332 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (600)
+..|+ ..++..+...+...|++++|...++.+.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11121 2234444444445555555555554443210 00000000000
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
....+..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222223333445556666666666666777777778888888888888888888776653
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=4.8e-10 Score=109.27 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-------cCCCh-------HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACA-------AKRDV-------FECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
++|+.+|++.+.. .|.+...|......+. ..|++ ++|..+++++++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4666677776665 3445555655555543 23554 566666666655211224445556666666
Q ss_pred HcCCHHHHHHHHccCCC--C-CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 182 KCGLISDASRVFESMPE--R-NEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~------------------ 171 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY------------------ 171 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHH------------------
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHH------------------
Confidence 66666666666655433 2 222 55555555555566666666665555432 1122222
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHH-hhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYA-KCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG- 332 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~-~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 332 (600)
........ ..|+.++|.++|++..+ .+...|..++..+.+.|+.++|..+|++.....
T Consensus 172 -----------------~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 172 -----------------VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp -----------------HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred -----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 22222211 13555555555554432 245666666666777777777777777777652
Q ss_pred CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 007530 333 LHP--NEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367 (600)
Q Consensus 333 ~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 367 (600)
+.| ....|..++......|+.+.|..+++.+.+..
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 344 34556666666677777777777777776543
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=1.4e-10 Score=103.59 Aligned_cols=168 Identities=11% Similarity=-0.012 Sum_probs=138.4
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3566788888888888888888888887653 467788888899999999999999999988753 335666777778
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999999887543 335678888999999999999999999876 3334 57899999999999999999
Q ss_pred HHHHHHHHhcCCCCCc
Q 007530 424 AEIAAKQLFGMEPDNA 439 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~ 439 (600)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999754
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=2.1e-10 Score=115.69 Aligned_cols=158 Identities=10% Similarity=0.022 Sum_probs=77.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHhC--CC----CchhHHH
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLG-LEYN----QFTISSVICACAGLAALIQGKQVHAVLCKTG--FG----SNMFAAS 275 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~ 275 (600)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+...++.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3444556666666666666655420 0111 2344555555556666666666655554421 00 0123344
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 007530 276 SLVDMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHARSVEVMILFEKMQQA----GLHP-NEQTYI 341 (600)
Q Consensus 276 ~l~~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~ 341 (600)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 445555555555555555443321 01 124455555555555555555555555441 1212 233455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555566666655555544
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=3.2e-10 Score=114.30 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=122.9
Q ss_pred HhccCCchhHHHHHHHHHHh--CC--CCchhHHHHHHHHH--HhcCChHHHH-----------HHHccCCC-C-Ccc---
Q 007530 43 CARERAPVRGKVCHAKIIGM--GL--NNDTLTSNILINFY--SKCGLISGAR-----------KVFDEMPQ-R-CIV--- 100 (600)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y--~~~g~~~~A~-----------~~~~~~~~-~-~~~--- 100 (600)
+.+.++++.|..+.+.+.+. .. .++...|-.++..- .-.+.++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34678899999999888664 22 23333334443221 1112222333 44444321 1 111
Q ss_pred ---hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-----
Q 007530 101 ---SWNTIIGSYTTNGREQEAVALFINMLREGKTPY----SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR----- 168 (600)
Q Consensus 101 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----- 168 (600)
.|......+...|++++|+..|++..+.-.-.+ ...++..+...+...|+.+.|...+..+++.....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112244556778888888888888776410112 23466777777778888888888777776642111
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-C
Q 007530 169 -NVFVGTALLDVYAKCGLISDASRVFESMPE-----RN----EVTWSSMVAGFVQNELYEEALILFRRAQVL----GL-E 233 (600)
Q Consensus 169 -~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 233 (600)
...+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++.... +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 123566666777777777777666655432 11 135566666666666666666666665541 22 2
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
....++..+...+...|++++|...+...++
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234455555555556666666655555543
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=1.9e-10 Score=124.27 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=138.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSC 378 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 378 (600)
+..+|+.+...|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.|++.++. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4567888888888888888888888888874 454 677888888888999999999999888753 34 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 379 MIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888999999999999988876 3345 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 007530 457 EVARARKLIRD 467 (600)
Q Consensus 457 ~a~~~~~~m~~ 467 (600)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=4.3e-10 Score=99.88 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 348 (600)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444555555566666666666655543 234445555555555555555555555554431 223344444444444
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 428 (600)
..|++++|.+.++.+.+. .+.+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555555544444322 1234555666666666677777777777
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+++++..|+++..+..++.+|...|++++|...++...+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776654
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=7.6e-09 Score=103.66 Aligned_cols=258 Identities=12% Similarity=-0.016 Sum_probs=157.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHhC--C-CC--chhHHHHHHHH
Q 007530 210 GFVQNELYEEALILFRRAQVLGLEYNQF----TISSVICACAGLAALIQGKQVHAVLCKTG--F-GS--NMFAASSLVDM 280 (600)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~ 280 (600)
.+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+.. . .+ ...+...+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666655554432111111 23333444555566666666555554421 0 00 11234455666
Q ss_pred HHhhCCHHHHHHHHhcCCC----------c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHH
Q 007530 281 YAKCGCVVDAYFVFSGIEE----------K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH--P--NEQTYISVLS 345 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~ 345 (600)
|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 6667777777666654431 1 1234555667778888888888888887664221 1 2346667777
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHH-----HHHHHHHhcCCHHHHHHHHHcCC-CCCC-----HHHHHHHHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-----CMIDILGRAGLIHEAYDLILNMP-FDAT-----ASMWGSLLAS 414 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~ 414 (600)
.+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 78888999999988888754321111111111 23345778899999999988762 1121 3356677788
Q ss_pred HHHcCChHHHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPD------NAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+...|++++|...++++++..+. ....+..++.+|...|+.++|...++...+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88899999999999988764322 123667788899999999999999887764
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=8e-10 Score=102.37 Aligned_cols=151 Identities=11% Similarity=-0.023 Sum_probs=78.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMI 380 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 380 (600)
+..|......+...|++++|+..|++..+....++...+..+..++...|++++|+..++...+. .| +...+..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHH
Confidence 34444445555555555555555555555432244444444555555555555555555555422 22 334455555
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CH-------HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHHH
Q 007530 381 DILGRAGLIHEAYDLILNM-PFDA-TA-------SMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNIY 449 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m-~~~p-~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 449 (600)
..|...|++++|.+.+++. ...| +. ..|..+...+...|++++|...++++++++|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5555555555555555544 1112 22 33455555555556666666666666666665 555555666665
Q ss_pred HhcCCh
Q 007530 450 AANRRW 455 (600)
Q Consensus 450 ~~~g~~ 455 (600)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=4.4e-10 Score=116.54 Aligned_cols=210 Identities=13% Similarity=-0.012 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 007530 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193 (600)
Q Consensus 115 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 193 (600)
+++++..+++.... .+.+...+..+..++...|++ ++|...+..+++..+. +..++..+...|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55667777765554 345667777777788888888 8888888887776533 4566666666666666666666666
Q ss_pred ccCCC--CCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 194 ESMPE--RNEVTWSSMVAGFVQN---------ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 194 ~~m~~--~d~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
++..+ |+...|..+...|.+. |++++|+..|++..+.
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------------------------------- 208 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------------------------------- 208 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------------------------------
Confidence 65433 4445555555555555 5555555555555543
Q ss_pred HHhCCCCchhHHHHHHHHHHhh--------CCHHHHHHHHhcCCC------cCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007530 263 CKTGFGSNMFAASSLVDMYAKC--------GCVVDAYFVFSGIEE------KNVVLWNTMISGFSRHARSVEVMILFEKM 328 (600)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~y~~~--------g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m 328 (600)
. +.+...+..+...|... |++++|...|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 209 ---~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 209 ---D-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ---C-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---C-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 22333444444444444 455555555554431 35667777888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 329 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+.. +-+...+..+..++...|++++|.+.+..+.
T Consensus 285 l~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 285 AALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7752 2345567777888888888888888777663
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=9e-11 Score=114.14 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHc-------CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC------
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLRE-------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA------ 165 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 165 (600)
..+|..+...+...|++++|+.+|+++.+. . .+....++..+...+...|++++|...+..+++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456777888888888888888888887763 1 23344556666677777777777777777666541
Q ss_pred C-CCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 166 M-DRNVFVGTALLDVYAKCGLISDASRVFESMPE-----------RNEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 166 ~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
- +....++..+...|...|++++|.+.|++..+ ....+|..+...|...|++++|++.|++..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11234455555566666666666655554321 012334444555555555555555555544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.6e-09 Score=96.14 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHH
Q 007530 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGF 312 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 312 (600)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677888899999999999999887654 45678899999999999999999999998753 4678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 4467778888888888999999999988886432 22334444444445445544444
Q ss_pred HHHHHc
Q 007530 393 YDLILN 398 (600)
Q Consensus 393 ~~~~~~ 398 (600)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=1.1e-09 Score=101.39 Aligned_cols=204 Identities=9% Similarity=-0.009 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMIS 310 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 310 (600)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356778888888899999999999999999887446777777789999999999999999987653 35678888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc---HHHHHHH
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHPN-E-------QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN---VFHYSCM 379 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 379 (600)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|+..|+.+++ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999998875 343 3 4567777788889999999999998863 3554 5667777
Q ss_pred HHHHHhcCCH--HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 380 IDILGRAGLI--HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 380 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
...|...|+. ++|..+ . ..+...+.... ....+.+++|...++++++++|+++.....+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777666543 222222 1 12334443333 33456689999999999999999987777766554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=4.9e-10 Score=112.73 Aligned_cols=163 Identities=8% Similarity=-0.013 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc---CCCccHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQA----GLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQH---NVLPNVF 374 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~ 374 (600)
.+++.+...|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++..+.. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 34555555666666666666666655442 1111 12345556666666677777777666665310 1122345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC----CC--CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHhcCCCCCcchHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM----PF--DAT-ASMWGSLLASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
++..+...|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++. ...|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 5666666677777777776666654 11 122 2233444444444555 55555555552 122333445667
Q ss_pred HHHHHHhcCChHHHHHHHHHhh
Q 007530 445 LSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
++..|...|++++|...++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888888888877664
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=1.6e-08 Score=101.59 Aligned_cols=226 Identities=10% Similarity=-0.018 Sum_probs=146.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHhC--C---C-CchhHHHHH
Q 007530 209 AGFVQNELYEEALILFRRAQVLG-LEYN----QFTISSVICACAGLAALIQGKQVHAVLCKTG--F---G-SNMFAASSL 277 (600)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~---~-~~~~~~~~l 277 (600)
..+...|++++|+..|++....- -.++ ..++..+...+...|+++.|...+..+.+.. . . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34455666666666666654321 0111 2344455555666666666666666555421 0 1 123455666
Q ss_pred HHHHHhhCCHHHHHHHHhcCCC-----c----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEE-----K----NVVLWNTMISGFSRHARSVEVMILFEKMQQA----GLHPNEQTYISVL 344 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 344 (600)
...|...|++++|.+.|++..+ + ...+++.+...|...|++++|+..|++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 6777777777777766665432 1 1346777778888888888888888887761 2222356777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCC---HHHHHHHHHcCCCCCC-HHHHHHHHHHHHH
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNV---LPNVFHYSCMIDILGRAGL---IHEAYDLILNMPFDAT-ASMWGSLLASCRN 417 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~ 417 (600)
..+.+.|++++|...+++..+...- +.....+..+...|...|+ +++|..++++.+..|+ ...+..+...+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 8888999999999999888754322 2223456666667777788 8889998888754444 3466678888889
Q ss_pred cCChHHHHHHHHHHhcC
Q 007530 418 YRNLELAEIAAKQLFGM 434 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~ 434 (600)
.|++++|...++++++.
T Consensus 349 ~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999888753
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=2.3e-08 Score=100.10 Aligned_cols=256 Identities=11% Similarity=-0.020 Sum_probs=130.6
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCC-hh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CC----hhHHHHH
Q 007530 107 GSYTTNGREQEAVALFINMLREGKTPYS-EF----TVSSVLCACAAKRDVFECKQLHVFALKAAMD-RN----VFVGTAL 176 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 176 (600)
..+...|++++|...+++..... +++ .. ++..+...+...|+++.|...+.+.++.... .+ ..+++.+
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455666777777666666542 222 11 2344445555566666666666665543211 11 1224455
Q ss_pred HHHHHHcCCHHHHHHHHccCCC-------C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 007530 177 LDVYAKCGLISDASRVFESMPE-------R----NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE--Y--NQFTISS 241 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 241 (600)
...|...|++++|...+++..+ + ...++..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5666666666666666554321 1 1234455566666777777777777666543211 1 1234555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCc-hhHHH-----HHHHHHHhhCCHHHHHHHHhcCCCcC-------HhHHHHH
Q 007530 242 VICACAGLAALIQGKQVHAVLCKTGFGSN-MFAAS-----SLVDMYAKCGCVVDAYFVFSGIEEKN-------VVLWNTM 308 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~l 308 (600)
+...+...|++++|...+.......-.++ ...+. ..+..+...|++++|...+++...++ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55566666777777666666654311111 01111 22333556666666666666554321 1234455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 309 ISGFSRHARSVEVMILFEKMQQA----GLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55566666666666666655432 111111 133344445555566666665555543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=2.7e-09 Score=101.83 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=23.2
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.|..+..+..++.+|...|++++|...+++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455677778888888888888887776653
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=6.6e-09 Score=100.27 Aligned_cols=217 Identities=8% Similarity=-0.059 Sum_probs=122.7
Q ss_pred CHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 007530 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL----GLEYN-QFTISSVICACAGLAALIQGKQVH 259 (600)
Q Consensus 185 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 259 (600)
++++|...|++ ....|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47777776554 366777888888888888776542 21111 345556666666666666666666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC-
Q 007530 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAGLH-PN- 336 (600)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~- 336 (600)
...++. +.+.|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 555442 1112222111 23455666666664 7777777777766552100 01
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHH-
Q 007530 337 ---EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-----FHYSCMIDILGRAGLIHEAYDLILNM-PFDATAS- 406 (600)
Q Consensus 337 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 406 (600)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2356666777777777777777777776432111111 14555666677777777777777765 3333321
Q ss_pred -----HHHHHHHHHH--HcCChHHHHHHHHHHhcCCCCC
Q 007530 407 -----MWGSLLASCR--NYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 407 -----~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.+..++.++. ..+++++|...++++.+++|..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2334445543 2456777777777776666654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=2.3e-08 Score=94.62 Aligned_cols=205 Identities=11% Similarity=0.021 Sum_probs=120.8
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-N---VVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN-EQTYI 341 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 341 (600)
+...+-.+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555555666666666666655543 1 2 34455555556666666666666666555311 111 23344
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007530 342 SVLSACSH--------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413 (600)
Q Consensus 342 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 413 (600)
.+..++.. .|++++|...|+.+++.+.-.+. ...++.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 44444544 55666666666655543321111 111111000000000 112456778
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCccCCceEEEE
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSNIYAAN----------RRWEEVARARKLIRDSEVKKEKSKSWVE 480 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 480 (600)
.+...|+++.|...++++++..|++ +..+..++.+|... |++++|...++.+.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----------- 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----------- 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----------
Confidence 8899999999999999999998884 44788899999877 99999999999987654
Q ss_pred EcCcccCcchHHHHHHHHHHHHHHHH
Q 007530 481 IKGKRNHPRIAEIYSKLEKLVEEMKK 506 (600)
Q Consensus 481 i~~~~~~~~~~~~~~~l~~l~~~m~~ 506 (600)
..++...++...+.++..++.+
T Consensus 226 ----p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ----PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHHHHHHH
Confidence 2345667777777777776654
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.99 E-value=9.6e-09 Score=110.99 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 007530 68 TLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144 (600)
Q Consensus 68 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~ 144 (600)
...++.|-..|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++.. |-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 44555555555555555555555554331 234455555555555555555555555555542 3334455555555
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHH
Q 007530 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEAL 221 (600)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~ 221 (600)
+...|++++|.+.++++++..+. +...++.+..+|.+.|++++|++.|++..+ .+...|..+...|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555555554322 344455555555555555555555544332 23444444555555555555555
Q ss_pred HHHHHH
Q 007530 222 ILFRRA 227 (600)
Q Consensus 222 ~~~~~m 227 (600)
+.+++.
T Consensus 166 ~~~~ka 171 (723)
T 4gyw_A 166 ERMKKL 171 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=9.7e-09 Score=99.09 Aligned_cols=201 Identities=10% Similarity=-0.046 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-------c--CHhHHHHHHHHHHhcCChHHH
Q 007530 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-------K--NVVLWNTMISGFSRHARSVEV 321 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 321 (600)
++++|...+..+ ...|...|++++|...|.+..+ + ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3457778888888888776542 1 146788899999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHH
Q 007530 322 MILFEKMQQAGL---HPN--EQTYISVLSACSHI-GMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 322 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 391 (600)
+..|++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988766311 111 35788888899996 9999999999998753211111 3568889999999999999
Q ss_pred HHHHHHcC-CCCC---CH-----HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch-----HHHHHHHHH--hcCCh
Q 007530 392 AYDLILNM-PFDA---TA-----SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN-----HLLLSNIYA--ANRRW 455 (600)
Q Consensus 392 A~~~~~~m-~~~p---~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 455 (600)
|...|++. ...| .. ..|..+..++...|+++.|...+++.++++|+.+.. +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876 2222 21 257778888899999999999999999999976543 334566664 55778
Q ss_pred HHHHHHHHHhh
Q 007530 456 EEVARARKLIR 466 (600)
Q Consensus 456 ~~a~~~~~~m~ 466 (600)
++|...++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888875553
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=1.1e-07 Score=90.36 Aligned_cols=237 Identities=9% Similarity=-0.003 Sum_probs=147.5
Q ss_pred HcCCHHHHHHHHccCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 182 KCGLISDASRVFESMPER-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
-.|.+..++.-...+... +...-.-+.++|...|++... ..-.|....+..+. .|...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHHH
Confidence 346666666544444322 222233344666666665531 01123322222222 222222 455555
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-----KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 335 (600)
..+..+ .++......+...|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 555544 34444445777788888888888888877632 24567777788888999999999999998774 66
Q ss_pred -----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC----
Q 007530 336 -----NEQTYISVLSAC--SH--IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF---- 401 (600)
Q Consensus 336 -----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---- 401 (600)
+..+...+..++ .. .+++.+|..+|+++.+. .|+......+..++.+.|++++|++.++.+ ..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 356666666552 22 33889999999998643 344333334444788899999999888754 11
Q ss_pred -------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 402 -------DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 402 -------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
+.|+.+...++......|+ .|.++++++.+..|++|.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2346666667666666776 889999999999999874
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=1.4e-08 Score=96.74 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHh------CC-CCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---------
Q 007530 135 EFTVSSVLCACAAKRDVFECKQLHVFALKA------AM-DRNVFVGTALLDVYAKCGLISDASRVFESMPE--------- 198 (600)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------- 198 (600)
..++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++..+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555566666666655555543 11 11233455555666666666666655554321
Q ss_pred -C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 199 -R-NEVTWSSMVAGFVQNELYEEALILFRRAQVL------GLEY-NQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 199 -~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
+ ...+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 2345566666666667777776666666543 1122 234555666666666777777666666655
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=2.3e-06 Score=88.55 Aligned_cols=219 Identities=12% Similarity=0.006 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchh
Q 007530 200 NEVTWSSMVAGFVQNEL-------YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 272 (600)
+...|...+.--..++. .+.+..+|+++.... +-+...|...+.-+...|+.+.|..++...++. +.+..
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 34466655554332211 345667888877642 344666666667777788888888888888887 44443
Q ss_pred HHHHHHHHHHhhCCHHHH-HHHHhcCC------------CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 007530 273 AASSLVDMYAKCGCVVDA-YFVFSGIE------------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 339 (600)
.+.. |+.....++. ..+.+... ......|-..+..+.+.+..+.|..+|++. .. ..++...
T Consensus 248 l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp HHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred HHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 3332 2222111111 01111100 001234444454444555566666666655 21 1112222
Q ss_pred HHH--HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 007530 340 YIS--VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 417 (600)
|.. .+... ..++.+.|..+|+...+.++-. ...+...++...+.|+.+.|..+|+++. .....|...+..-..
T Consensus 322 ~i~~A~lE~~-~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 322 FIYCAFIEYY-ATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHH-HHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 221 11111 1224566666666655443222 2234445555555566666666666552 234455555554445
Q ss_pred cCChHHHHHHHHHHh
Q 007530 418 YRNLELAEIAAKQLF 432 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~ 432 (600)
+|+.+.+..++++..
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555444443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=4.5e-08 Score=92.56 Aligned_cols=200 Identities=9% Similarity=-0.037 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c----CHhH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN---MFAASSLVDMYAKCGCVVDAYFVFSGIEE--K----NVVL 304 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 304 (600)
.+...+-.....+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667777888899999999999999999864 223 67788899999999999999999998764 2 2456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 007530 305 WNTMISGFSR--------HARSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 305 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
+..+..++.. .|++++|+..|++..+. .|+. ..... ...+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999885 3442 11111 1111111100 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHc----------CChHHHHHHHHHHhcCCCCCcc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNY----------RNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
+..+...|.+.|++++|...|+++ |..+ ....+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 445667778888888888888765 3222 245666777777655 8889999999999999998764
Q ss_pred h---HHHHHHHHHhcCCh
Q 007530 441 N---HLLLSNIYAANRRW 455 (600)
Q Consensus 441 ~---~~~l~~~~~~~g~~ 455 (600)
. ...+..++...+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 231 LRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3 33444444444433
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=2.3e-07 Score=88.10 Aligned_cols=239 Identities=5% Similarity=-0.113 Sum_probs=163.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 007530 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288 (600)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 288 (600)
+-..-.|.+..++.-..++. ...+.....-+.+++...|++..+ ..-.|....+..+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc---
Confidence 34455788888887333221 122223444456777777776532 11123332333333 333333
Q ss_pred HHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 289 DAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 289 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
|...|++.. .++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777654 2456666788888999999999999999987655322 45567778889999999999999999996
Q ss_pred HhcCCCc-----cHHHHHHHHHH--HHh--cCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 365 KQHNVLP-----NVFHYSCMIDI--LGR--AGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 365 ~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
+. .| +..+...|..+ ... .++.++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 56 34555555555 333 34999999999998 33455334444555888899999999999988875
Q ss_pred ----------CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 435 ----------EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 435 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58888888777777777887 8889999888654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=5.4e-08 Score=80.88 Aligned_cols=129 Identities=12% Similarity=0.213 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 383 (600)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 45555566666666666666666665542 2234455555555555566666666655554321
Q ss_pred HhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
+.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344455555555556666666666666666666666666666666666677777766666
Q ss_pred Hhhh
Q 007530 464 LIRD 467 (600)
Q Consensus 464 ~m~~ 467 (600)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6554
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=8.3e-08 Score=79.70 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998753 467889999999999999999999999998864 3456778888888999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999887532 224555666666666666666666666543
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=1.8e-07 Score=86.25 Aligned_cols=180 Identities=9% Similarity=0.004 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE--KN----VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE----QTYI 341 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 341 (600)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444456667777777777777776653 22 245666667777777777777777777664 2321 1233
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC
Q 007530 342 SVLSACSH------------------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403 (600)
Q Consensus 342 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 403 (600)
.+..++.. .|+.++|...|+.+++.++-.+. .+.+... .+......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~----l~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKR----LVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHH----HHHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHH----HHHHHHHH----------
Confidence 33333332 34556666666655533211111 1111100 00000000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA---GNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456677889999999999999999999875 4688999999999999999999998887653
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=6e-09 Score=89.40 Aligned_cols=138 Identities=4% Similarity=-0.085 Sum_probs=92.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
...|+.++|++.+++.... .|+ ...+..+...|...|++++|++.|++.++.. +-+...|..+..+|.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHH
Confidence 3445566666666655432 222 2344456666667777777777777665432 2245566677777777777777
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHH-HHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 392 AYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIA-AKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 392 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
|...|++. .+.| +...|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777665 3334 467788888888888888766554 588999999999998888888877774
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=2.4e-08 Score=108.34 Aligned_cols=169 Identities=8% Similarity=-0.079 Sum_probs=123.0
Q ss_pred HhhCCHHHHHHHHhcCC-----------CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 282 AKCGCVVDAYFVFSGIE-----------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350 (600)
Q Consensus 282 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 350 (600)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777877777654 2355677777778888888888888888887742 22456777777778888
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 007530 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAA 428 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 428 (600)
|++++|.+.|+++.+.. +-+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888876542 2245677778888888888888 7777765 2233 4677888888888888888888888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
+++++++|++...+..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888766555
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=9.9e-08 Score=91.64 Aligned_cols=174 Identities=9% Similarity=-0.037 Sum_probs=132.5
Q ss_pred HHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 007530 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368 (600)
Q Consensus 289 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 368 (600)
...+.+......+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33444444444455667777788888999999999999988852 235667788888899999999999999988633
Q ss_pred CCccHHHHHHHH-HHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC--cchHH
Q 007530 369 VLPNVFHYSCMI-DILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN--AGNHL 443 (600)
Q Consensus 369 ~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 443 (600)
.|+........ ..+.+.++.++|...+++. ... .+...+..+...+...|++++|...+.++++.+|++ +..+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 45544333222 2356677777788777765 223 457889999999999999999999999999999987 77899
Q ss_pred HHHHHHHhcCChHHHHHHHHHhh
Q 007530 444 LLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 444 ~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988876643
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=3.3e-08 Score=84.66 Aligned_cols=122 Identities=11% Similarity=-0.057 Sum_probs=100.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC
Q 007530 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYR 419 (600)
Q Consensus 343 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 419 (600)
|...+...|++++|+..+.... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445567789999999998875 33453 445567889999999999999999987 3344 6889999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH-HHHhhh
Q 007530 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA-RKLIRD 467 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 467 (600)
++++|...++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=5.7e-07 Score=87.26 Aligned_cols=221 Identities=10% Similarity=-0.048 Sum_probs=149.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHH
Q 007530 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 292 (600)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577888999888776531 111 0 11135666666665543 345677788887777
Q ss_pred HHhcCCCc---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCCHHHHHH
Q 007530 293 VFSGIEEK---------NVVLWNTMISGFSRHARSVEVMILFEKMQQAG---LHPN--EQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 293 ~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
.|.+..+- -..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77655421 13577888888899999999999998876531 1122 3567778888888 99999999
Q ss_pred HHHHHHHhcCCC---c-cHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCChHHHHH
Q 007530 359 YFDLMVKQHNVL---P-NVFHYSCMIDILGRAGLIHEAYDLILNM----PFDAT----ASMWGSLLASCRNYRNLELAEI 426 (600)
Q Consensus 359 ~~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~ 426 (600)
.|++.++...-. + ...++..+...|.+.|++++|...|++. +..++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999886532111 1 1457888899999999999999999876 11122 2356667777778899999999
Q ss_pred HHHHHhcCCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 007530 427 AAKQLFGMEPDNAGN-----HLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 427 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 461 (600)
.+++++ ++|..... ...++.+| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99875433 33445545 56676665553
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=8.9e-07 Score=80.65 Aligned_cols=161 Identities=6% Similarity=-0.073 Sum_probs=120.3
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHHhcCCCccHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG----MVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
.+..++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|+...+ .| +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHH
Confidence 355666666677777778888888888877765 45566666666666 5 78888888888753 22 4556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHcCC-CCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 376 YSCMIDILGR----AGLIHEAYDLILNMP-FDAT---ASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 376 ~~~li~~~~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
+..|..+|.. .+++++|.++|++.- ..|. +..+..|...+.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6667777766 778888888888763 2332 6788888888887 78899999999999988 55677888
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHhhhCC
Q 007530 444 LLSNIYAAN-R-----RWEEVARARKLIRDSE 469 (600)
Q Consensus 444 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 469 (600)
.|+.+|... | ++++|...++...+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999765 3 8999999999888766
No 103
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=8.2e-08 Score=81.98 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=86.7
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 368 NVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 368 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
.+.| +...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3345 4556777788888999999999998876 223 468889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++.+|...|++++|...++...+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999998887543
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=4.7e-07 Score=98.08 Aligned_cols=189 Identities=11% Similarity=0.004 Sum_probs=144.8
Q ss_pred HccCchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhc
Q 007530 247 AGLAALIQGKQVHAVLC--------KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRH 315 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 315 (600)
...|++++|...+..++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 32 245667788888889999999999999987764 4678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 316 ARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
|++++|++.|++..+. .| +...+..+..++...|++++ ++.|+++++.. +.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 34 46778888889999999999 99999987542 2356788899999999999999999
Q ss_pred HHHcC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHhcCCCCCcch
Q 007530 395 LILNM-PFDAT-ASMWGSLLASCRNYRN-----LELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 395 ~~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99987 56676 5677777777766554 344555555555565555543
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=1.8e-07 Score=99.38 Aligned_cols=160 Identities=8% Similarity=-0.027 Sum_probs=124.1
Q ss_pred hCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 284 CGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998764 357889999999999999999999999998852 335778888999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHhcCC
Q 007530 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNY---RNLELAEIAAKQLFGME 435 (600)
Q Consensus 361 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~ 435 (600)
++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9997643 335778899999999999999999999886 2334 578899999999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 007530 436 PDNAGNHLLLS 446 (600)
Q Consensus 436 p~~~~~~~~l~ 446 (600)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887766
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=2.4e-07 Score=81.61 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN--AGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 47788888888888899999999999999988864 4588889999999999999988887654
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=1.3e-07 Score=80.74 Aligned_cols=102 Identities=10% Similarity=-0.039 Sum_probs=88.1
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 368 NVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 368 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4455 4556777778888899999999998877 3334 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++.+|...|++++|...++...+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988654
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=2.5e-06 Score=88.21 Aligned_cols=193 Identities=5% Similarity=-0.107 Sum_probs=113.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC--------C---
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN--------V--- 369 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~--- 369 (600)
+...|-..+.-+.+.|+.++|..++++.... |+...+.. +|......++ +++.+.+.+- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcc
Confidence 4566777777777778888888888887776 44332221 1221111111 1222221110 0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CCHHHHHHHHHHHHH-cCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
......|...+..+.+.|..+.|..+|++...+ .+..+|......-.. .++.+.|..+++.+++..|+++..+...++
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 112345667777777788899999999887211 234455433322222 346999999999999877887777777788
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEc-CcccCcchHHHHHHHHHHHHHHHHCC
Q 007530 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-GKRNHPRIAEIYSKLEKLVEEMKKLG 508 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~l~~~m~~~g 508 (600)
...+.|+.+.|+.+++...+ ....|.... --..+|..+.+.+.+++....++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 78888999999999988621 011121111 11556777666666666666665443
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=1.5e-06 Score=83.39 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHH-HHH
Q 007530 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTM-ISG 311 (600)
Q Consensus 235 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~ 311 (600)
+...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|+++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445556666667777777777777777664 44667777888888899999999999988874 443332222 233
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 312 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
+.+.++.++|+..+++..... +.+...+..+...+...|++++|...|..+++...-..+...+..+...|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 666777888888888887752 3356677788888888889999998888887653222235677777777877787777
Q ss_pred HHHHHHc
Q 007530 392 AYDLILN 398 (600)
Q Consensus 392 A~~~~~~ 398 (600)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.66 E-value=9.7e-07 Score=80.14 Aligned_cols=129 Identities=11% Similarity=-0.020 Sum_probs=55.9
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 007530 277 LVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGM 352 (600)
Q Consensus 277 l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 352 (600)
+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 44445555555555555544431 23445555555555555555555555555553 22 23444444444433322
Q ss_pred --HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 007530 353 --VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGS 410 (600)
Q Consensus 353 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 410 (600)
.+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 222333333321 11122112222333344455555555555543 34455443333
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=4.7e-07 Score=96.17 Aligned_cols=147 Identities=9% Similarity=-0.040 Sum_probs=102.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
.|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887754 44677888888888899999999988887653 45678888888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHcC
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA---GLIHEAYDLILNM 399 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 399 (600)
++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888752 3356778888888888999999999998887542 23566778888888888 8889888888776
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=1.9e-07 Score=77.10 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+......|.+.|++++|.+.|++. ... .+...|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3344444455555555555555443 112 23455555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHhhh
Q 007530 453 RRWEEVARARKLIRD 467 (600)
Q Consensus 453 g~~~~a~~~~~~m~~ 467 (600)
|++++|.+.++...+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=7.7e-07 Score=80.82 Aligned_cols=129 Identities=7% Similarity=-0.022 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 007530 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385 (600)
Q Consensus 306 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 385 (600)
+.+...|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|+++++.. +.+...+..+...|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 447888999999999999999998853 2356788888899999999999999999997543 2356778888888766
Q ss_pred cCC--HHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 386 AGL--IHEAYDLILNMPFDATA--SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 386 ~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 553 455666676663 3443 345555666777899999999999999999973
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=2.7e-06 Score=81.74 Aligned_cols=160 Identities=10% Similarity=-0.028 Sum_probs=117.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHH
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ----TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYS 377 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 377 (600)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...|+.+.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887642 223321 2334666677778999999999988753222223 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-------C-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchH
Q 007530 378 CMIDILGRAGLIHEAYDLILNMP-------F-DAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNH 442 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 442 (600)
.+...|...|++++|...++++- . .+. ..++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999888887651 1 122 3478889999999999999999999998754322 5678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHhh
Q 007530 443 LLLSNIYAANRR-WEEVARARKLIR 466 (600)
Q Consensus 443 ~~l~~~~~~~g~-~~~a~~~~~~m~ 466 (600)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 699999887765
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=9.3e-07 Score=80.35 Aligned_cols=123 Identities=11% Similarity=-0.041 Sum_probs=89.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcC
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYR 419 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~ 419 (600)
.+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445555666666666665442 345556666666666666666666666554 11 235677888888888888
Q ss_pred ChHHHHHHHHHHhcCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 420 NLELAEIAAKQLFGMEPDNA----------------GNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++++|...++++++..|.+. ..+..++.+|...|++++|...++...+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88889889999888888766 789999999999999999999999988654
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=6.9e-07 Score=86.67 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHH
Q 007530 239 ISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 239 ~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
|..+...+...|++++|...+...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344444444455555555444443
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=2.9e-06 Score=77.02 Aligned_cols=144 Identities=9% Similarity=-0.054 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 007530 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354 (600)
Q Consensus 275 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 354 (600)
..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455666777777777777777776677777777777777777777777777776642 334556666667777777777
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 355 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+|.+.|+.+.+...-.+... +...| +...|+ ...|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777654321111000 00000 012232 46778888888889999999999999999
Q ss_pred CCCCC
Q 007530 434 MEPDN 438 (600)
Q Consensus 434 ~~p~~ 438 (600)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98875
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=8.8e-07 Score=77.97 Aligned_cols=153 Identities=12% Similarity=0.009 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 007530 172 VGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA-CA 247 (600)
Q Consensus 172 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 247 (600)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 345566677788888888888888765 35677888888888888888888888876554 2333222111111 11
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c---CHhHHHHHHHHHHhcCChHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K---NVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~ 322 (600)
..+....+...+..+++.. +.+...+..+...|...|++++|...|+++.+ | +...|..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1111222344455544432 22344444444444444444444444444332 1 1224444444444444444444
Q ss_pred HHHHH
Q 007530 323 ILFEK 327 (600)
Q Consensus 323 ~l~~~ 327 (600)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=1.7e-06 Score=78.78 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCChhHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----DVFECKQLHVFALKAAMDRNVFVG 173 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~ 173 (600)
+..++..+-..|...+++++|+..|++..+.| +...+..+...+.. + +.++|...+....+.| +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44445555555555555555555555555544 34444444444444 4 5555555555555543 44455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHccCCCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 174 TALLDVYAK----CGLISDASRVFESMPERN-----EVTWSSMVAGFVQ----NELYEEALILFRRAQVLGLEYNQFTIS 240 (600)
Q Consensus 174 ~~li~~y~~----~g~~~~A~~~f~~m~~~d-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 240 (600)
..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|+..|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 555555555 556666666666655432 4566666666666 56677777777666654 12333444
Q ss_pred HHHHHHHcc-C-----chHHHHHHHHHHHHhC
Q 007530 241 SVICACAGL-A-----ALIQGKQVHAVLCKTG 266 (600)
Q Consensus 241 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~~ 266 (600)
.+...|... | +.++|...+....+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444322 2 5666666666666665
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=8.6e-07 Score=73.15 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 415 (600)
..+......+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.+++. .+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345556666777777777777777766432 224566667777777777777777777665 223 3577888999999
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 448 (600)
...|++++|...++++++++|+++..+..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998887777654
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=9.3e-07 Score=74.69 Aligned_cols=97 Identities=11% Similarity=-0.075 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445566677788888888888888876 223 46788889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 007530 450 AANRRWEEVARARKLIRDS 468 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888754
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.56 E-value=1.6e-05 Score=76.21 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhhCC
Q 007530 214 NELYEEALILFRRAQVLGLEYNQF-TISSVICACAGLA--ALIQGKQVHAVLCKTGFGSNMFAASSLVDMY----AKCGC 286 (600)
Q Consensus 214 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y----~~~g~ 286 (600)
....++|++++.++... .|+.. .++.--.++...+ .++++...+..++... +.+..+|+.-...+ .+.+
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~- 121 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN- 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc-
Confidence 33445677777776653 34333 3444444444555 5666666666665543 22333333322222 2220
Q ss_pred HHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE--KGKSYFDLMV 364 (600)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~ 364 (600)
..+++++++++++++.+.. +-|...+..-...+.+.|.++ ++.++++.++
T Consensus 122 ---------------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 122 ---------------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp ---------------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 0044555555555555432 223444444444444444444 5555555554
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCC------HHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHhcCC
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGL------IHEAYDLILNM-P-FDATASMWGSLLASCRNYRN-LELAEIAAKQLFGME 435 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~ 435 (600)
+.. .-+...|+.-..++.+.|. ++++++.++++ . .+.|...|+.+...+...|+ .+....+..++++++
T Consensus 174 ~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 174 DTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 332 1233344433333444443 55555555544 1 12355666666666655554 233444555555544
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 436 ---PDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 436 ---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
|.++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55566666666666666777777776666654
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.4e-06 Score=83.77 Aligned_cols=164 Identities=9% Similarity=-0.078 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--Ccc--H
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-E----QTYISVLSACSHIGMVEKGKSYFDLMVKQHNV--LPN--V 373 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 373 (600)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999999988777532211 1 22334555667788999999999887642211 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC------C
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-------PFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD------N 438 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~ 438 (600)
..|+.+...|...|++++|...+++. +..+. ..++..+...|...|++++|...+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888889999999999998888765 21221 258888999999999999999999999875432 1
Q ss_pred cchHHHHHHHHHhcCChHHH-HHHHHHhh
Q 007530 439 AGNHLLLSNIYAANRRWEEV-ARARKLIR 466 (600)
Q Consensus 439 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 466 (600)
...|..++.+|.+.|++++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788999999999999999 77676654
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=6.5e-05 Score=71.88 Aligned_cols=215 Identities=7% Similarity=-0.083 Sum_probs=140.5
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----HHc-
Q 007530 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR--DVFECKQLHVFALKAAMDRNVFVGTALLDVY----AKC- 183 (600)
Q Consensus 111 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 183 (600)
+....++|++++..++... |-+...|+.--..+...+ +++++...++.+++..+. +..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3344468888888888763 445556677777777777 888888888888887654 556666544444 444
Q ss_pred --CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----
Q 007530 184 --GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYE--EALILFRRAQVLGLEYNQFTISSVICACAGLAA----- 251 (600)
Q Consensus 184 --g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 251 (600)
++++++..+++.+.+ +|-.+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.......+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 678888888887764 46777877777777778877 8888888888764 3355566655555555555
Q ss_pred -hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH-HHHHHhcCCC------cCHhHHHHHHHHHHhcCChHHHHH
Q 007530 252 -LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD-AYFVFSGIEE------KNVVLWNTMISGFSRHARSVEVMI 323 (600)
Q Consensus 252 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 323 (600)
++++.+....++... +.|...|+-+...+.+.|+... +..+..++.+ ++...+..+...|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 667777777777665 5566677766666666665333 3334444332 244555555566666666666666
Q ss_pred HHHHHHH
Q 007530 324 LFEKMQQ 330 (600)
Q Consensus 324 l~~~m~~ 330 (600)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=1.7e-06 Score=79.53 Aligned_cols=183 Identities=11% Similarity=-0.083 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC-H---hHHHH
Q 007530 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGS--NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KN-V---VLWNT 307 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 307 (600)
...+-.....+...|++++|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566777889999999999999999864221 245777889999999999999999998763 32 2 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 007530 308 MISGFSR------------------HARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHN 368 (600)
Q Consensus 308 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 368 (600)
+..++.. .|+.++|+..|+++.+. .|+.. ...... + ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHHH----
Confidence 5555544 57899999999999885 45532 211111 0 001111110
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 369 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++++....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12234567788899999999888876 22233 25688888999999999999999999998888754
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=2e-06 Score=74.38 Aligned_cols=126 Identities=9% Similarity=0.018 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCR 416 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 416 (600)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444455555666666666666554321 224455556666666666666666666554 11 235677888888888
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHH--HHHhcCChHHHHHHHHHhh
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSN--IYAANRRWEEVARARKLIR 466 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 466 (600)
..|++++|...+++++++.|.++..+..+.. .+...|++++|...++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8999999999999999999988777744444 4778899999999887664
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=2.1e-06 Score=69.92 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~ 415 (600)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|..+++++ . .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344445555555556666666555554321 223445555566666666666666666554 1 123566777778888
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888877777776543
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=5e-07 Score=86.36 Aligned_cols=191 Identities=5% Similarity=-0.066 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3344455556666666666666665543 2355666777777777777777777777776542 22455666777777
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 426 (600)
...|++++|...|+...+.. |+. ..+...+....+......... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 77778888877777765422 210 001111111111111111111 1222223344333333 222 2688999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhhC
Q 007530 427 AAKQLFGMEPDNAGNHLLLSNIYAAN-RRWEEVARARKLIRDS 468 (600)
Q Consensus 427 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 468 (600)
.++++++++|++......+...+.+. +++++|.++|....+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998877777777777766 7899999999888653
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=7.6e-06 Score=78.62 Aligned_cols=62 Identities=10% Similarity=-0.112 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCc-hHHHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVL----GLEYN-QFTISSVICACAGLAA-LIQGKQVHAVLCK 264 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~ 264 (600)
+|+.+...|.+.|++++|+..+++.... +..+. ..+|..+..++...|+ .++|...+..++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4555555555555555555555554321 11111 3455555555566663 4666665555544
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=2e-06 Score=70.77 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=75.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCR 416 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 416 (600)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44444455555555555555555554321 223445555555666666666666665554 11 234667777778888
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
..|+++.|...++++++..|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888877765
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=1.9e-06 Score=84.57 Aligned_cols=159 Identities=9% Similarity=0.013 Sum_probs=106.2
Q ss_pred CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 286 CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 286 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
++++|...|+...+ .+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+.+.-.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~- 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA- 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH-
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH-
Confidence 33444444444332 134566666667777777777777777766542 221000 0011110000
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.....|..+..+|.+.|++++|...+++. ... .+...|..+..++...|++++|...++++++++|+++.
T Consensus 194 --------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred --------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 01346677777778888888888777765 223 35788889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHH-HHHHHHhh
Q 007530 441 NHLLLSNIYAANRRWEEV-ARARKLIR 466 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a-~~~~~~m~ 466 (600)
.+..++.++...|++++| ...++.|.
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 44555554
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=2.2e-06 Score=70.83 Aligned_cols=113 Identities=8% Similarity=-0.029 Sum_probs=64.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~ 417 (600)
+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3334444444444444444444443211 113334444444444444444444444433 11 2245667777777777
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
.|++++|...++++++.+|.+...+..++.++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888877788888887776653
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=3.1e-06 Score=74.37 Aligned_cols=118 Identities=6% Similarity=0.024 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHH-HHHcCCh--HHH
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLAS-CRNYRNL--ELA 424 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~-~~~~~~~--~~a 424 (600)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++. .. +.+...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344445555555444321 123344555555555555555555555543 11 1245555556666 5566666 777
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777777777777777777777777777777777766543
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.8e-06 Score=69.84 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
..+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45556666777778888887777765 222 3577888888888889999999999999999999988899999999999
Q ss_pred cCChHHHHHHHHHhhhC
Q 007530 452 NRRWEEVARARKLIRDS 468 (600)
Q Consensus 452 ~g~~~~a~~~~~~m~~~ 468 (600)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999998887653
No 135
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.7e-06 Score=87.86 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=86.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
.+...|++++|.+.+++.++.. +.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3455677777777777776432 224667777777777777777777777765 2334 57788899999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHH
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNI--YAANRRWEEVARARKL 464 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 464 (600)
|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999899888888 8889999999999874
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=2.1e-06 Score=77.14 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=80.4
Q ss_pred hcCChHHHHH---HHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHc----CCCCCChhhHHHHHHHHhcCCChH
Q 007530 80 KCGLISGARK---VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE----GKTPYSEFTVSSVLCACAAKRDVF 152 (600)
Q Consensus 80 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~p~~~t~~~ll~~~~~~~~~~ 152 (600)
..|++++|.+ ++..-+.....+++.+...+...|++++|+..|++.... +..+....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 554433334556666777777777777777777666552 101122344555566666666777
Q ss_pred HHHHHHHHHHHh---CC-C--CChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----CC----HHHHHHHHHHHHhCCCH
Q 007530 153 ECKQLHVFALKA---AM-D--RNVFVGTALLDVYAKCGLISDASRVFESMPE-----RN----EVTWSSMVAGFVQNELY 217 (600)
Q Consensus 153 ~a~~~~~~~~~~---g~-~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~ 217 (600)
+|...+...++. .. . ....++..+...|...|++++|...|++..+ .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666665544 11 1 1123455566666666666666666554321 11 12344555556666666
Q ss_pred HHHHHHHHHHH
Q 007530 218 EEALILFRRAQ 228 (600)
Q Consensus 218 ~~A~~~~~~m~ 228 (600)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=1.4e-05 Score=76.78 Aligned_cols=158 Identities=14% Similarity=0.077 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh------hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC---CC--h
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSE------FTVSSVLCACAAKRDVFECKQLHVFALKAAMD---RN--V 170 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~--~ 170 (600)
+...+..+...|++++|++.+.+..+.. +.+. ..+..+...+...|++++|...+..+++.... +. .
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3344555566666666666666655542 1111 11222333344445555555555555432111 11 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC-----CC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-C
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE-----RN-----EVTWSSMVAGFVQNELYEEALILFRRAQVLG----LEY-N 235 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~ 235 (600)
.+++.+...|...|++++|...|++..+ ++ ..+|+.+...|.+.|++++|+..+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 2455555555555555555555544320 11 1355555556666666666666665544321 000 0
Q ss_pred HHHHHHHHHHHHccCchHHH-HHHHHH
Q 007530 236 QFTISSVICACAGLAALIQG-KQVHAV 261 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a-~~~~~~ 261 (600)
..+|..+...+...|+.++| ...+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 23444444445555555555 443333
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=1.3e-06 Score=81.75 Aligned_cols=134 Identities=11% Similarity=-0.092 Sum_probs=76.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHH
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN--VFHYSCMIDILG 384 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 384 (600)
.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHH
Confidence 3445556666666666666665543 24433333444456666677777766664431 11 111 224555566666
Q ss_pred hcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 385 RAGLIHEAYDLILNM---PFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+.|++++|+..|++. +..|. ...+.....++...|+.++|...++++...+|+ +.....|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777777777776655 11132 235566666777777777777777777777776 5444333
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=8.1e-06 Score=70.68 Aligned_cols=97 Identities=10% Similarity=-0.059 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666666666666666654 2223 4666777777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 007530 450 AANRRWEEVARARKLIRDS 468 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777776653
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=7.8e-06 Score=73.32 Aligned_cols=81 Identities=14% Similarity=-0.045 Sum_probs=40.7
Q ss_pred hCCHHHHHH---HHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHH
Q 007530 284 CGCVVDAYF---VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA----GLHP-NEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 284 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~ 355 (600)
.|++++|.+ .+..-+......++.+...+...|++++|+..+++.... +..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 443322234455555555666666666666666655441 1111 12344455555556666666
Q ss_pred HHHHHHHHH
Q 007530 356 GKSYFDLMV 364 (600)
Q Consensus 356 a~~~~~~~~ 364 (600)
|...+++..
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=8.4e-06 Score=71.53 Aligned_cols=127 Identities=8% Similarity=0.017 Sum_probs=96.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhcCCH--
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI-LGRAGLI-- 389 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 389 (600)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 3456778888888888999999999999887543 2356677777777 7788888
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 390 HEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
++|...+++. ...| +...|..+...+...|+++.|...+++++++.|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999888876 2234 577888899999999999999999999999999886544
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=9.9e-06 Score=69.87 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=66.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
.|..+...+...|++++|...|++..+. .+.+..++..+...+...|++++|...+..+++..+. +..++..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4555666666667777777776666665 2445555666666666666666666666666655322 444555555555
Q ss_pred HHcCCHHHHHHHHccCCC---CCHHHHHH--HHHHHHhCCCHHHHHHHHHHH
Q 007530 181 AKCGLISDASRVFESMPE---RNEVTWSS--MVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~---~d~~~~~~--li~~~~~~g~~~~A~~~~~~m 227 (600)
.+.|++++|.+.|++..+ .+...+.. ++..+.+.|++++|+..+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555555555555554432 12233322 222244445555555555443
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=1.4e-05 Score=64.20 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=47.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCR 416 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 416 (600)
.+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444455555555555555555554321 113334444444455555555555444443 1111 2344444444444
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
..|++++|...++++++.+|+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4555555555555555544444443333
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=2.7e-06 Score=69.52 Aligned_cols=94 Identities=14% Similarity=-0.006 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445566777888888888888876 2334 67888888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhCC
Q 007530 454 RWEEVARARKLIRDSE 469 (600)
Q Consensus 454 ~~~~a~~~~~~m~~~~ 469 (600)
++++|...++...+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998887543
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=1.7e-05 Score=63.66 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444444455555555544443 11 123444444444444455555555555555555554444444555555555
Q ss_pred CChHHHHHHHHHhh
Q 007530 453 RRWEEVARARKLIR 466 (600)
Q Consensus 453 g~~~~a~~~~~~m~ 466 (600)
|++++|...++...
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555544444
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=6.9e-06 Score=68.43 Aligned_cols=97 Identities=9% Similarity=-0.012 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+...|++++|...|++. ... .+...|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666677777777777777777664 222 34677888888888888899999999999998898888889999999
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 007530 450 AANRRWEEVARARKLIRDS 468 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988887654
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.26 E-value=1.5e-05 Score=64.74 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888889999999999999999887 2 23467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCC
Q 007530 451 ANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~ 469 (600)
..|++++|...++.+.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.26 E-value=7.6e-06 Score=69.66 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (600)
..|..+...+.+.|++++|+..|++..... |.+...|..+..++...|++++|...++.+++..+. +...+..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 344444445555555555555555554442 333444444444444444444444444444443322 23333333333
Q ss_pred HHHcCCHHHHHHHH
Q 007530 180 YAKCGLISDASRVF 193 (600)
Q Consensus 180 y~~~g~~~~A~~~f 193 (600)
|.+.|++++|...|
T Consensus 114 ~~~lg~~~eA~~~~ 127 (151)
T 3gyz_A 114 QLRLKAPLKAKECF 127 (151)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33333333333333
No 149
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=4.4e-06 Score=66.49 Aligned_cols=96 Identities=15% Similarity=0.002 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHHH
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNIY 449 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 449 (600)
..+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|. ++..+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34455566666677777777766654 11 235667778888888888888888888888888888 888888888889
Q ss_pred Hhc-CChHHHHHHHHHhhhCC
Q 007530 450 AAN-RRWEEVARARKLIRDSE 469 (600)
Q Consensus 450 ~~~-g~~~~a~~~~~~m~~~~ 469 (600)
... |++++|.+.++...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 899 99999998888887654
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.25 E-value=1.3e-05 Score=66.04 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=89.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678888999999999999999999886 4444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhhhCC
Q 007530 448 IYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+|...|++++|.+.++...+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999887643
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.25 E-value=1.9e-05 Score=73.88 Aligned_cols=182 Identities=8% Similarity=-0.078 Sum_probs=132.9
Q ss_pred hhCCHHHHHHHHhcCCC---cCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---------------
Q 007530 283 KCGCVVDAYFVFSGIEE---KNVVLWNTM-------ISGFSRHARSVEVMILFEKMQQAGLHPNE--------------- 337 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 337 (600)
..++...|.+.|.+..+ .....|+.+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777788888877663 345677777 3555555555566655555443 23321
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH----H
Q 007530 338 -------QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA----S 406 (600)
Q Consensus 338 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 406 (600)
.....+...+...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223456677889999999999998852 2464435566667889999999999999977434433 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGME--PD-NAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999998633 54 44577889999999999999999999998654
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=7.5e-06 Score=73.46 Aligned_cols=170 Identities=7% Similarity=-0.057 Sum_probs=98.2
Q ss_pred HHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 355 (600)
......|+++.|.+.++.-.+ .....|..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 334445666666666654332 13455666777777788888888888877763 2211000000 0000
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
- ... .....+..+..+|.+.|++++|...+++. .. +.+...|..+..++...|+++.|...++++++
T Consensus 82 ~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 K---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 000 01245666667777777777777777665 22 23577888888899999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHH-HHHHHhhhCC
Q 007530 434 MEPDNAGNHLLLSNIYAANRRWEEVA-RARKLIRDSE 469 (600)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 469 (600)
++|+++..+..+..++...++.+++. ..++.|..++
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888887776 4455554433
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.24 E-value=0.00056 Score=66.18 Aligned_cols=180 Identities=9% Similarity=-0.086 Sum_probs=123.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
|+.+-....+.+..++|++++.+++... |-+..+|+.--..+...+ +++++..+++.+++..++ +..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 4444444455566678999999998863 445566777777777777 588888998888887655 777787777777
Q ss_pred HHc-C-CHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 181 AKC-G-LISDASRVFESMPE---RNEVTWSSMVAGFVQNELYE--------EALILFRRAQVLGLEYNQFTISSVICACA 247 (600)
Q Consensus 181 ~~~-g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 247 (600)
.+. + +.+++.++++.+.+ +|-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 78888888888876 35667776555555545555 8888888888764 336666666666666
Q ss_pred ccCc-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 248 GLAA-------LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 248 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
+.+. ++++.+....++... +.|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6654 566666666666654 5566667666666665554
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.22 E-value=7.8e-06 Score=77.99 Aligned_cols=95 Identities=16% Similarity=-0.056 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAG 210 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~ 210 (600)
+...+..+...+...|++++|...+..+++..+. +...+..+...|.+.|++++|...|++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555566666666666666666666665433 566677777777777777777777776554 356677777788
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQV 229 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~ 229 (600)
|.+.|++++|+..|++...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888877654
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2.2e-05 Score=66.17 Aligned_cols=109 Identities=10% Similarity=-0.047 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSL 411 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 411 (600)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444444444444444444444431 1232 334444555555555555555555443 1122 45666677
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 412 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
..++...|++++|...++++++++|+++..+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777778888888888888888887766665555543
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2e-05 Score=66.39 Aligned_cols=99 Identities=15% Similarity=0.030 Sum_probs=89.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 371 PNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35678888899999999999999999886 55676 67888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC
Q 007530 446 SNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 446 ~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+.+|...|++++|...++...+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=1.4e-05 Score=65.54 Aligned_cols=98 Identities=9% Similarity=-0.028 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788888999999999999999886 22 346788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhCC
Q 007530 450 AANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~~ 469 (600)
...|++++|...++...+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 158
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=3.6e-06 Score=71.62 Aligned_cols=103 Identities=10% Similarity=-0.083 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 415 (600)
..+..+...+...|++++|...|+.+++.. +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344555566666777777777777665432 225556666677777777777777777665 2223 466777888888
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
...|++++|...+++++++.|+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888999999999999998888877553
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.18 E-value=0.0018 Score=62.71 Aligned_cols=179 Identities=12% Similarity=-0.024 Sum_probs=104.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007530 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ-FTISSVICACAGLA-ALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281 (600)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y 281 (600)
++.+-....+.+..++|++++.++... .|+. ..++.--..+...| .++++..++..++... +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 334334444555667788888887764 3433 34454444555566 4777777777777654 44566666655555
Q ss_pred Hhh-C-CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 282 AKC-G-CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSV--------EVMILFEKMQQAGLHPNEQTYISVLSACS 348 (600)
Q Consensus 282 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 348 (600)
.+. + ++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555 5 66777777777664 35556665444444444444 7777777777753 225556666555555
Q ss_pred ccCC-------HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 007530 349 HIGM-------VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388 (600)
Q Consensus 349 ~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 388 (600)
+.+. +++++++++.++... +-|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 5554 566666666665432 2245555555555555543
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=1.3e-05 Score=67.51 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=63.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~ 417 (600)
+..+...+...|++++|...|+.+++.. +.+...|..+..+|.+.|++++|...|++. ... .+...|..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3334445555566666666666554322 124445555556666666666666666554 112 245567777777888
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
.|++++|...+++++++.|+++.......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88888888888888888887776544433
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.1e-05 Score=64.52 Aligned_cols=108 Identities=9% Similarity=-0.112 Sum_probs=62.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 417 (600)
+......+...|++++|...|+..++.. +.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444444555555555555555554321 123445555555555556666665555544 1222 45667777777777
Q ss_pred cCChHHHHHHHHHHhcCC------CCCcchHHHHHHHH
Q 007530 418 YRNLELAEIAAKQLFGME------PDNAGNHLLLSNIY 449 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 449 (600)
.|++++|...++++++++ |+++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 777778888888877777 66665555554443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=2.4e-05 Score=67.66 Aligned_cols=108 Identities=12% Similarity=0.010 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLAS 414 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 414 (600)
...+..+...+...|++++|+..|+..++.. +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555556666666666666666665432 224556666666777777777777776655 2233 47788888899
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
+...|++++|...++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999887654443
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=2e-05 Score=68.05 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888888999999999999999999999999999999999999999999999999887754
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.10 E-value=1.4e-05 Score=65.90 Aligned_cols=93 Identities=4% Similarity=-0.085 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc-------hHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG-------NHLLL 445 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 445 (600)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555666777777777777777665 2233 4778888888889999999999999999988876543 56778
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 007530 446 SNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 446 ~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8899999999999999987764
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=3.8e-05 Score=78.76 Aligned_cols=160 Identities=10% Similarity=0.000 Sum_probs=103.5
Q ss_pred CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 286 CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 286 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
++++|...|+...+ .....|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ...
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~ 314 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES 314 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH
Confidence 34444444443332 23456666777777777777777777777653 1221000 0 000000 000
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
-....|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|...++++++++|++..
T Consensus 315 --------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 315 --------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred --------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 01346777777888888888888888776 222 35788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHH-HHHHhhh
Q 007530 441 NHLLLSNIYAANRRWEEVAR-ARKLIRD 467 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 467 (600)
.+..++.++...|+++++.+ .++.|..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875 3555543
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=3.5e-05 Score=63.99 Aligned_cols=100 Identities=6% Similarity=-0.078 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHH
Q 007530 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLA 413 (600)
Q Consensus 336 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~ 413 (600)
+...+..+...+...|++++|...|+..++.. +.+...+..+...|...|++++|...+++. ... .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34555555555666666666666666655332 223455566666666666666666666554 112 24667777777
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCC
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+...|+++.|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777778888888888888777665
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=1.7e-05 Score=65.19 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHHHHHh
Q 007530 380 IDILGRAGLIHEAYDLILNM-PFDAT-A---SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSNIYAA 451 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 451 (600)
...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34455556666665555544 11122 1 355566666677777777777777777777776 5557777777777
Q ss_pred cCChHHHHHHHHHhhhC
Q 007530 452 NRRWEEVARARKLIRDS 468 (600)
Q Consensus 452 ~g~~~~a~~~~~~m~~~ 468 (600)
.|++++|...++...+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766653
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=4.4e-06 Score=75.02 Aligned_cols=120 Identities=11% Similarity=-0.006 Sum_probs=58.5
Q ss_pred HHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh--------------
Q 007530 73 ILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE-------------- 135 (600)
Q Consensus 73 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~-------------- 135 (600)
..+......|.++.+.+.++.... .....|..+...+.+.|++++|+..|++.+... +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHH
Confidence 334444455666666666654332 234567777888888999999999999888752 2222
Q ss_pred --hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 136 --FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 136 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
..+..+..++...|++++|...+..+++..+ .+..++..+..+|...|++++|.+.|++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444444444444555555554444444422 1333444444444444444444444433
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=3.9e-05 Score=62.82 Aligned_cols=95 Identities=6% Similarity=-0.051 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-------cchHHH
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-------AGNHLL 444 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 444 (600)
..+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666667777777777777655 1 12356677777788888888888888888888877665 667888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999888764
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=1.6e-05 Score=67.16 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcC-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGM-------EPDNAGNH----LLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
..|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888887 99998899 9999999999999999999988864
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.00 E-value=0.001 Score=64.07 Aligned_cols=189 Identities=8% Similarity=-0.014 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC--CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 007530 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG--CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR-SVEVMILF 325 (600)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 325 (600)
++++..++..++... +-+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 334555554444444555 25566666655543 355566655555555565 46666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHI--------------GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA----- 386 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 386 (600)
+++.+.. +-|...|+.....+.+. +.++++.+++...+... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 6666643 22444444433333322 33556666666555332 22444454443344333
Q ss_pred ------CCHHHHHHHHHcC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 387 ------GLIHEAYDLILNM-PFDATASMWGSLLASC-----RNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 387 ------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+.++++.+.++++ ...||. .|..+..+. ...+..++....+.++.+++|...+.|.-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 2345555555554 233443 233211111 123455556666666666666554444433
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.99 E-value=4.8e-05 Score=74.57 Aligned_cols=95 Identities=9% Similarity=-0.075 Sum_probs=53.7
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC---------------hhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS---------------EFTVSSVLCACAAKRDVFECKQLHVFAL 162 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~---------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 162 (600)
+...|..+...|.+.|++++|+..|++.+... +.+ ...+..+..++...|++++|...+..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45578888888999999999999999988863 222 2344444444444444444444444444
Q ss_pred HhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 163 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
+..+. +...+..+..+|...|++++|...|++
T Consensus 224 ~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 224 ELDSN-NEKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44322 333444444444444444444444443
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.96 E-value=5.9e-06 Score=66.95 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHcC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007530 387 GLIHEAYDLILNM-PF---DA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 387 g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 461 (600)
|++++|+..|++. .. .| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444555555443 22 12 2345666666666667777777777777777777766777777777777777777776
Q ss_pred HHHhhh
Q 007530 462 RKLIRD 467 (600)
Q Consensus 462 ~~~m~~ 467 (600)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=6.5e-05 Score=59.48 Aligned_cols=98 Identities=13% Similarity=-0.000 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC---CHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA---TASMWGSLLASC 415 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 415 (600)
+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3444445555556666666665554322 223445555566666666666666666554 1222 466777777777
Q ss_pred HHc-CChHHHHHHHHHHhcCCCCCc
Q 007530 416 RNY-RNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 416 ~~~-~~~~~a~~~~~~~~~~~p~~~ 439 (600)
... |++++|.+.++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 778888888888777777653
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=5.7e-05 Score=64.38 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLH-PNE----QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 377 (600)
.++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 34555666666667777777776665543100 111 24444555555556666666555554321100000
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC------CCcchHHHHHHHHH
Q 007530 378 CMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEP------DNAGNHLLLSNIYA 450 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~ 450 (600)
.+ ...++..+...+...|++++|...+++++++.+ .....+..++.+|.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00 123445555556666666666666666654321 12346677888888
Q ss_pred hcCChHHHHHHHHHhhh
Q 007530 451 ANRRWEEVARARKLIRD 467 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~ 467 (600)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888877653
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=0.0001 Score=60.12 Aligned_cols=113 Identities=6% Similarity=-0.057 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 382 (600)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555566666666666666666665542 2244455555555566666666666665554321 10
Q ss_pred HHhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 007530 383 LGRAGLIHEAYDLILNMPFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 448 (600)
..++ ..+|..+...+...|+++.|...++++++..| ++.....+..+
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 0111 34555566666666666666666666666666 34444444443
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=7e-05 Score=74.36 Aligned_cols=137 Identities=9% Similarity=-0.006 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMID 381 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 381 (600)
..|..+...+.+.|++++|+..|++..+. .|+.. ..... .... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 34666666667777777777777666542 01000 00001 1110 1122 4567888888
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998876 4445 57889999999999999999999999999999999999999999999888888776
Q ss_pred HH
Q 007530 460 RA 461 (600)
Q Consensus 460 ~~ 461 (600)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.92 E-value=0.0016 Score=62.66 Aligned_cols=180 Identities=13% Similarity=0.064 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 007530 287 VVDAYFVFSGIE---EKNVVLWNTMISGFSRHAR--SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM-VEKGKSYF 360 (600)
Q Consensus 287 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 360 (600)
++++..+++.+. .++..+|+.-.-.+...|+ +++++++++++.+.. +-|...|+.-...+...|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666655 3577888887777777774 789999999999864 3366777766666677777 58999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhc--------------CCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHc------
Q 007530 361 DLMVKQHNVLPNVFHYSCMIDILGRA--------------GLIHEAYDLILNM-P-FDATASMWGSLLASCRNY------ 418 (600)
Q Consensus 361 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~------ 418 (600)
+.+++.. +-+...|+....++.+. +.++++++.+.+. . .+.|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9988653 33566666666555554 4577888888766 2 234678887666655554
Q ss_pred -----CChHHHHHHHHHHhcCCCCCcchHHHHHHH---HHhcCChHHHHHHHHHhhhCC
Q 007530 419 -----RNLELAEIAAKQLFGMEPDNAGNHLLLSNI---YAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 419 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+.++++++.++++++++|++.-.+..++.. ....|..+++...+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457888999999999999874433333221 123455666666666665433
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00013 Score=74.06 Aligned_cols=162 Identities=4% Similarity=-0.113 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHh---cCCCc-cHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQA-GLHPNEQ----TYISVLSACSHIGMVEKGKSYFDLMVKQ---HNVLP-NVFH 375 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~ 375 (600)
+..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|+.+++..++...... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555556666666666665554431 0111111 1112222233455666666666554321 11111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC---CC----cc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEP---DN----AG 440 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~ 440 (600)
+..+...|...|++++|..++++. ..+|. ..++..++..|...|++++|...+++++...+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666667776666666543 11121 34566666667777777777777766665321 11 22
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556666667777777766655443
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.90 E-value=0.00017 Score=59.13 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
+|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455555666666666666666665531 1234455556666666666666666666554
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=0.0001 Score=75.58 Aligned_cols=124 Identities=9% Similarity=-0.003 Sum_probs=93.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhcC--C---Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHN--V---LP-NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASMWG 409 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 409 (600)
.+...|++++|+.++++..+... + .| ...+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888887777654321 1 12 2456788888888888888888877664 34455 46788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhc-----CCCCCcchH---HHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 410 SLLASCRNYRNLELAEIAAKQLFG-----MEPDNAGNH---LLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 410 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.|...|...|++++|+.+++++++ +.|+.|.+- ..|..++...|++++|..++..++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 677765543 478888899999999999999998754
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00023 Score=72.30 Aligned_cols=97 Identities=7% Similarity=-0.008 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhc---CCCcc--
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQA--GL--HPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQH---NVLPN-- 372 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-- 372 (600)
.++..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++...... +.+|.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 45666777777788888888887776543 11 121 3467777888888899999988888765422 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
...+..+...+...|++++|...|.+.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345666677777888888887766544
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=3.2e-05 Score=75.89 Aligned_cols=147 Identities=9% Similarity=-0.070 Sum_probs=74.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 455666777777888888888888887763 454332 222333333332211 125666777
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHH
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY-AANRRWEEV 458 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 458 (600)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++..+..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888877765 2233 5677888888888888888888888888888888877777777763 344566667
Q ss_pred HHHHHHhhhC
Q 007530 459 ARARKLIRDS 468 (600)
Q Consensus 459 ~~~~~~m~~~ 468 (600)
...++.|.+.
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777666543
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=9.3e-05 Score=63.00 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN---- 336 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 336 (600)
..++..+...|...|++++|...|++..+ .+ ..++..+...+...|++++|+..+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678889999999999999999987653 11 24788888899999999999999999876311 112
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
...+..+...+...|++++|...++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566677777888888888888877653
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.84 E-value=0.00022 Score=58.24 Aligned_cols=99 Identities=10% Similarity=-0.109 Sum_probs=55.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHc
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNY 418 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~ 418 (600)
..+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|...+++. ...|+ ...+..+..++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444455555555555555433211110 124444555555566666665555544 11122 45566667777777
Q ss_pred CChHHHHHHHHHHhcCCCCCcchHH
Q 007530 419 RNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
|++++|...++++++..|+++....
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHH
Confidence 8888888888888887777654433
No 186
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.83 E-value=7.9e-05 Score=60.62 Aligned_cols=94 Identities=14% Similarity=-0.126 Sum_probs=63.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
.+..+...+.+.|++++|+..|++.++. -|.+...+..+..++...|+.++|...++.+++..+. +...+..+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4555666677777777777777777775 3456666666777777777777777777777776543 455666666666
Q ss_pred HHcCCHHHHHHHHccCC
Q 007530 181 AKCGLISDASRVFESMP 197 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~ 197 (600)
.+.|++++|...|++..
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66676666666666543
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=1.2e-05 Score=64.05 Aligned_cols=92 Identities=10% Similarity=-0.076 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNHL 443 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 443 (600)
+...+..+...+.+.|++++|.+.|++. ... .+...|..+..++...|++++|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456666777777888888888877765 222 357788889999999999999999999999999988 66777
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 007530 444 LLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 444 ~l~~~~~~~g~~~~a~~~~~ 463 (600)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888887777776655443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=8.9e-05 Score=63.80 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc-chHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA-GNHLLLSNI 448 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 448 (600)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777777888888888888887765 2233 577888899999999999999999999999999877 444444433
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=8e-05 Score=62.92 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM--------PFDAT-ASMW----GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4444455555555555554444433 33676 5688 899999999999999999999999999988765
Q ss_pred HHH
Q 007530 442 HLL 444 (600)
Q Consensus 442 ~~~ 444 (600)
+.-
T Consensus 139 ~~~ 141 (159)
T 2hr2_A 139 TPG 141 (159)
T ss_dssp CTT
T ss_pred HHH
Confidence 443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.74 E-value=0.0002 Score=71.02 Aligned_cols=114 Identities=7% Similarity=-0.009 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLASC 415 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~ 415 (600)
...+..+...+.+.|++++|+..|++.++.. +... .....+++.+ ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4456777777888888888888888776421 1100 0011111111 122 457888999999
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999887643
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.73 E-value=4.1e-05 Score=61.87 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHH
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEI 426 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 426 (600)
.|++++|+..|++.++...-.| +...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555666666666542100012 3445566666666667777776666655 2223 46677777777778888888888
Q ss_pred HHHHHhcCCCCCcch
Q 007530 427 AAKQLFGMEPDNAGN 441 (600)
Q Consensus 427 ~~~~~~~~~p~~~~~ 441 (600)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888877776643
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.00013 Score=56.99 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999999999999999999999999999999999887653
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=0.0014 Score=68.84 Aligned_cols=168 Identities=10% Similarity=0.007 Sum_probs=129.1
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR----------SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG-- 351 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 351 (600)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3456666666553 345667766556655565 889999999998863 235667777777778888
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc----------
Q 007530 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG-LIHEAYDLILNM-PFDA-TASMWGSLLASCRNY---------- 418 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---------- 418 (600)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999998643 336777777777788888 899999998887 3344 688998888777663
Q ss_pred ----CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 007530 419 ----RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 419 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
+.++++.+.+.++++++|++..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999888655
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00032 Score=71.87 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57888899999999999999999999999999999999999999999999999999999988654
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.69 E-value=0.00014 Score=71.31 Aligned_cols=152 Identities=7% Similarity=-0.037 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 350 (600)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888899999999999999997653221111 1223333444433221 13677788888899
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH-HHHcCChHHHHHH
Q 007530 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLAS-CRNYRNLELAEIA 427 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~ 427 (600)
|++++|+..++..++.. +.+...|..+..+|...|++++|...|++. .+.|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887542 236778888888999999999999999887 44554 4455555544 2345677888899
Q ss_pred HHHHhcCCCCCc
Q 007530 428 AKQLFGMEPDNA 439 (600)
Q Consensus 428 ~~~~~~~~p~~~ 439 (600)
+.++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888765
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.0002 Score=54.21 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666666777777777777777665 22 2356778888888888899999999999999999988888888888876
Q ss_pred hcC
Q 007530 451 ANR 453 (600)
Q Consensus 451 ~~g 453 (600)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 197
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.58 E-value=0.00019 Score=73.87 Aligned_cols=114 Identities=7% Similarity=-0.086 Sum_probs=49.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555554431 1124444555555555555555555555554221 12344455555555555555555
Q ss_pred HHHHHcC-CCCC-CHHHHHHHHHH--HHHcCChHHHHHHHH
Q 007530 393 YDLILNM-PFDA-TASMWGSLLAS--CRNYRNLELAEIAAK 429 (600)
Q Consensus 393 ~~~~~~m-~~~p-~~~~~~~ll~~--~~~~~~~~~a~~~~~ 429 (600)
.+.+++. ...| +...+..+..+ +...|++++|...++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555443 1111 12223333332 444555555555555
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00017 Score=57.81 Aligned_cols=77 Identities=8% Similarity=-0.006 Sum_probs=62.5
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 392 AYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 392 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...++...+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444443 2233 57788888888999999999999999999999999889999999999999999999999887653
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.00051 Score=52.54 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 402 DATASMWGSLLASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 402 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
++|+..|..+..++...++ .++|..+++++++++|+++.....++..+.+.|++++|...|+.+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888866555 79999999999999999999999999999999999999999999987653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00016 Score=57.26 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=69.1
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-C----hhH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR-N----VFV 172 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~----~~~ 172 (600)
+...|..+...+.+.|++++|++.|++.++. .|.+...+..+..++...|++++|...+..+++..+.. + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3456777777888888888888888888776 35567777778888888888888888888887754331 1 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 173 GTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
+..+..++...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5566666666676666666666554
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.41 E-value=0.00011 Score=62.01 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 385 RAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRN----------LELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
+.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555544 1222 45555555555555444 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHhhhCC
Q 007530 453 R-----------RWEEVARARKLIRDSE 469 (600)
Q Consensus 453 g-----------~~~~a~~~~~~m~~~~ 469 (600)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988654
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.00083 Score=67.73 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=79.8
Q ss_pred HHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc-----CCCCC---cchH
Q 007530 381 DILGRAGLIHEAYDLILNM---------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG-----MEPDN---AGNH 442 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~ 442 (600)
.-+.+.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455667777777776543 12222 35777888888888888888888888875 44544 4467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHH
Q 007530 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMK 505 (600)
Q Consensus 443 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~ 505 (600)
..|+.+|...|++++|..++++..+--. ..-=..||...++...|.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~----------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR----------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH----------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH----------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999887754110 0000468988888888888777765
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.32 E-value=0.0013 Score=67.45 Aligned_cols=127 Identities=12% Similarity=-0.015 Sum_probs=66.5
Q ss_pred HHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHh---CCCCchhHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQVL---GLEYN----QFTISSVICACAGLAALIQGKQVHAVLCKT---GFGSNMFAASSLVDM 280 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~ 280 (600)
+..+|++++|+.++++.... -+.|+ ..+++.+..+|...|++++|..++.++++. -+.++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---------- 388 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN---------- 388 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT----------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC----------
Confidence 44567777777777665432 11121 234555555555666666666555554431 00000
Q ss_pred HHhhCCHHHHHHHHhcCCCcC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHccCC
Q 007530 281 YAKCGCVVDAYFVFSGIEEKN-VVLWNTMISGFSRHARSVEVMILFEKMQQA-----G-LHPNE-QTYISVLSACSHIGM 352 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~~~ll~a~~~~g~ 352 (600)
.|+ ..+++.|...|...|++++|+.++++..+- | -.|+. .+...+-.++...+.
T Consensus 389 ------------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 389 ------------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 011 234555666666666666666666554431 2 12322 234445556667777
Q ss_pred HHHHHHHHHHHHH
Q 007530 353 VEKGKSYFDLMVK 365 (600)
Q Consensus 353 ~~~a~~~~~~~~~ 365 (600)
+++|+..+..+.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877754
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.12 E-value=0.0059 Score=50.59 Aligned_cols=110 Identities=11% Similarity=-0.007 Sum_probs=75.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cCCHHH
Q 007530 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----CGLISD 188 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~ 188 (600)
+++++|++.|++..+.| .|+. . +...+...+..+.|.+.+....+.| +...+..|..+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45678888888887776 2222 2 5556666667777888887777765 56677777777777 677777
Q ss_pred HHHHHccCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 007530 189 ASRVFESMPE-RNEVTWSSMVAGFVQ----NELYEEALILFRRAQVLG 231 (600)
Q Consensus 189 A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 231 (600)
|.+.|++..+ .+..++..|...|.. .++.++|+..|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776543 456667777777776 677777777777766655
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.0005 Score=57.88 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc-----------CChHHHHHHHHHHhcCCCCCcc
Q 007530 390 HEAYDLILNM-PFDA-TASMWGSLLASCRNY-----------RNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
++|+..|++. .+.| +...|..+..+|... |++++|...|+++++++|++..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 3555555544 2333 345566666666554 5899999999999999999753
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.06 E-value=0.0052 Score=50.94 Aligned_cols=115 Identities=9% Similarity=-0.032 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 007530 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 395 (600)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|..-.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~-------- 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGK-------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCS--------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCC--------
Confidence 35666667776666665 33333 444455555666666666666432 23334444444444400
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 007530 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA----NRRWEEVARARKLIRDSE 469 (600)
Q Consensus 396 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 469 (600)
...+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 72 --------------------g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 --------------------YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp --------------------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --------------------CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 0034445555555555443 234455555555555 556666666665555544
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.04 E-value=0.0047 Score=46.32 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
...|..+...+.+.|++++|+..|++..+. .+.+..++..+..++...|++++|...+..+++..+. +..++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 345666666677777777777777777665 2445566666677777777777777777777666432 4555555555
Q ss_pred HHHH
Q 007530 179 VYAK 182 (600)
Q Consensus 179 ~y~~ 182 (600)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.03 E-value=0.014 Score=61.07 Aligned_cols=150 Identities=9% Similarity=-0.021 Sum_probs=118.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC----------HHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 007530 315 HARSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGM----------VEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 383 (600)
....++|++.++++.+. .|+. ..|+.--.++...|+ ++++.++++.+.+.. +-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34456889999999985 5654 445544445555555 899999999998653 33666777777778
Q ss_pred HhcC--CHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc------
Q 007530 384 GRAG--LIHEAYDLILNM-P-FDATASMWGSLLASCRNYR-NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN------ 452 (600)
Q Consensus 384 ~~~g--~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 452 (600)
.+.| +++++.++++++ . ...+...|+.-.......| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999988 2 2357899999888888888 899999999999999999999999999888774
Q ss_pred --------CChHHHHHHHHHhhhC
Q 007530 453 --------RRWEEVARARKLIRDS 468 (600)
Q Consensus 453 --------g~~~~a~~~~~~m~~~ 468 (600)
++++++.+.++.....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678888888776643
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.03 E-value=0.058 Score=43.08 Aligned_cols=140 Identities=6% Similarity=-0.097 Sum_probs=104.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3467788888888887764 356667777766666777777788888775544433 35555555
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 393 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
..-+-.++ .+......-+......|+-+.-.++...++.-+|.+|....-++++|.+.|...+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555553 334455566778888999999999999987777767889999999999999999999999999999974
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.96 E-value=0.053 Score=59.67 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=108.7
Q ss_pred HHHcCCChhHHHH-HHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 007530 108 SYTTNGREQEAVA-LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186 (600)
Q Consensus 108 ~~~~~g~~~~A~~-~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 186 (600)
.....+++++|.+ ++.. ++ +......++..+...|..+.|.++.+ +. ..-......+|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VE-GKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CC-CHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhc------CC-chHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCH
Confidence 3345677777765 4311 22 12233666677777777777776542 11 1123456778999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 187 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-......|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987774 568899999999999999999999998754 3445555556777777666666655554
Q ss_pred CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007530 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327 (600)
Q Consensus 267 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 327 (600)
. ++.....|.++|++++|.+++.+ .+++++|+.+-+.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~------------------~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK------------------SQRFSEAAFLGST 774 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH------------------cCChHHHHHHHHH
Confidence 2 34445556777887777766554 4566666665554
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.0052 Score=61.83 Aligned_cols=92 Identities=13% Similarity=-0.011 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHHHhcC--CC---c-cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHH
Q 007530 350 IGMVEKGKSYFDLMVKQHN--VL---P-NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASMWGSLLA 413 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~ 413 (600)
.|++++|+.++++..+... +. | ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777776666543211 11 2 2345666777777777777777766654 33454 356777888
Q ss_pred HHHHcCChHHHHHHHHHHhc-----CCCCCcch
Q 007530 414 SCRNYRNLELAEIAAKQLFG-----MEPDNAGN 441 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 441 (600)
.|...|++++|+.+++++++ +.|+.|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 88888888888888888775 56776644
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.84 E-value=0.005 Score=47.63 Aligned_cols=64 Identities=9% Similarity=0.169 Sum_probs=42.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666677777777777777777776642 22345666666777777777777777776653
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.84 E-value=0.0096 Score=59.93 Aligned_cols=101 Identities=10% Similarity=-0.036 Sum_probs=66.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC--CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHH
Q 007530 344 LSACSHIGMVEKGKSYFDLMVKQHN--VLP----NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASM 407 (600)
Q Consensus 344 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 407 (600)
+..+.+.|++++|+.++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3344456677777777766653211 111 2346667777777777777777776654 34455 357
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhc-----CCCCCcchHHH
Q 007530 408 WGSLLASCRNYRNLELAEIAAKQLFG-----MEPDNAGNHLL 444 (600)
Q Consensus 408 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 444 (600)
++.|...|...|++++|+.+++++++ +.|+.|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888889999999999999988876 67887755443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.81 E-value=0.0016 Score=65.53 Aligned_cols=83 Identities=13% Similarity=0.016 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc-----CCCCC---cchHHHHH
Q 007530 385 RAGLIHEAYDLILNM---------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG-----MEPDN---AGNHLLLS 446 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~ 446 (600)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888887654 33444 46889999999999999999999999986 45554 44677899
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 007530 447 NIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 447 ~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 215
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.80 E-value=0.0061 Score=48.42 Aligned_cols=73 Identities=11% Similarity=-0.088 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 007530 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193 (600)
Q Consensus 118 A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 193 (600)
|+..|++..+. .|.+...+..+...+...|++++|...+..+++..+. +..++..+..+|.+.|++++|...|
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444443 2334444444444444555555555555544444321 2333444444444444444444443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.081 Score=58.17 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=58.8
Q ss_pred HHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
.+..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455677777777766553 456777777777777777777777776632 22333334445555555444
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 360 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
-+.... .| -++....+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444322 12 1233344455666666666666554
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.69 E-value=0.0085 Score=49.82 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceE
Q 007530 403 ATASMWGSLLASCRNYR---NLELAEIAAKQLFGME-P-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 477 (600)
++..+.-.+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 56667777777777766 5668888888888876 6 345677788888888899999988888887543
Q ss_pred EEEEcCcccCcchHHHHHHHHHHHHHHHHCCCcc
Q 007530 478 WVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511 (600)
Q Consensus 478 ~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 511 (600)
|...++....+.+.+.+++.|++-
T Consensus 102 ----------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 ----------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ----------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 556666666666677777777753
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.59 E-value=0.031 Score=53.98 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
++.+|..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555544444455666666666666655543 33445555556666666666665555443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.0085 Score=45.91 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 380 IDILGRAGLIHEAYDLILNM-PFDA-TAS-MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
...+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44566777777777777765 2233 456 788888888888999999999999999888887655
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.0047 Score=47.43 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAG-NHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.++...+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677889999999999999999999999 99999999999999999999999988654
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.72 E-value=0.23 Score=47.95 Aligned_cols=63 Identities=6% Similarity=-0.005 Sum_probs=40.1
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+...|.++...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++..
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566665555555677777777777776653 666666555566666677777777776665
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.59 E-value=0.063 Score=41.63 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC---------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM---------PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
-.|...+.+.|+++.|...|+.. +-.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34444445555555555544432 0123467788888999999999999999999999999987654443
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.47 E-value=1 Score=38.29 Aligned_cols=103 Identities=8% Similarity=0.070 Sum_probs=63.3
Q ss_pred HHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
+...++|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777665 4567788888888888888888888877643 3344444555666666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
+-......|- ++.....+.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5554444441 233333444556666666555443
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.61 Score=39.69 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=78.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
+...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456677888887776655 4567788888888888888888888877532 3334444555677666555
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 431 (600)
+-+... ..| -++.....+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 544432 222 23444455666788888888887765322211 1123356666666666554
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.35 E-value=0.047 Score=50.57 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=65.6
Q ss_pred HHHHHHHHHcC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CChHH
Q 007530 389 IHEAYDLILNM-PFDAT---ASMWGSLLASCRN-----YRNLELAEIAAKQLFGMEPDN-AGNHLLLSNIYAAN-RRWEE 457 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 457 (600)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555544 34555 4577777777777 489999999999999999974 88999999999884 99999
Q ss_pred HHHHHHHhhhCCCccCC
Q 007530 458 VARARKLIRDSEVKKEK 474 (600)
Q Consensus 458 a~~~~~~m~~~~~~~~~ 474 (600)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999998876655334
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.19 E-value=3.7 Score=43.00 Aligned_cols=250 Identities=9% Similarity=-0.004 Sum_probs=127.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
-+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|......+-..| .........++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34455566667777777776665 33355555556666777777777777666665554 22333455556555544432
Q ss_pred HH--HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHh---HHHHHHHHHHhc
Q 007530 253 IQ--GKQVHAVLCKTG-----------FGSNM-FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV---LWNTMISGFSRH 315 (600)
Q Consensus 253 ~~--a~~~~~~~~~~~-----------~~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~ 315 (600)
.. ..+=+..+...| ++++. .....++..+.+ ...+........ ++.. ....-+.-+.+
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-
Confidence 21 111112222211 11111 122223332222 222222222211 1111 11112223333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 316 ARSVEVMILFEKMQQAGLHPNEQTYI----SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
.+.+.|..+|......+ ..+..... .+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788999998886543 22332222 2222333444345666666655322 2333333334444557799999
Q ss_pred HHHHHHcCCCCC-CHHHH-HHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 392 AYDLILNMPFDA-TASMW-GSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 392 A~~~~~~m~~~p-~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
|...|+.|+..+ +..-| -=+..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996443 22222 2244466778999999999999875
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.90 E-value=0.23 Score=37.53 Aligned_cols=69 Identities=9% Similarity=-0.084 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 371 PNVFHYSCMIDILGRAGL---IHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|...++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 455666677776654443 67888888776 3334 467777788888889999999999999999888844
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.61 E-value=0.11 Score=43.14 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
...+-.|.-++.+.|++++|.+.++.+++++|++....
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34555677788899999999999999999999876443
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.59 E-value=0.0015 Score=64.52 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=167.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 007530 67 DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146 (600)
Q Consensus 67 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~ 146 (600)
.+.+|+.|..++.+.+++.+|++-| +...|...|..+|.+..++|++++-++.+...++. . -++..=+.++-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~-ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A-RESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--C-CSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--h-cccccHHHHHHHHH
Confidence 4568888999998889888888777 44467778899999999999999988887766654 2 25566678899999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC------------------------CCHH
Q 007530 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE------------------------RNEV 202 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~d~~ 202 (600)
+.+++.+-++++ -.||..-...+.+=+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 998877665543 245666667788888889999999888887752 3677
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
||-.+-.+|...+++.-|.-.--.+.- .|| ....++..|...|.+++-..+++..+... .....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 898888889888888766544333331 222 12334555677787877777777665322 346778888888888
Q ss_pred hhCCHHHHHHHHhcCC----Cc-------CHhHHHHHHHHHHhcCChHHHHH
Q 007530 283 KCGCVVDAYFVFSGIE----EK-------NVVLWNTMISGFSRHARSVEVMI 323 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 323 (600)
|- ++++-.+-++... -| ....|.-++-.|.+..+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 3344444333222 12 45578888888888888887654
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.35 E-value=0.26 Score=39.26 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 424 AEIAAKQLFGME-P-DNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 424 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+..+++.+++.+ | ..-.....|+-++.+.|++++|.+..+.+.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444454444433 2 122233345555555555555555555554
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.43 E-value=2.5 Score=33.92 Aligned_cols=140 Identities=11% Similarity=0.029 Sum_probs=88.2
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
.-.|..++..++..+..... +..-++.++.-....-+-+-..++++.+ |--.|. ..||++...
T Consensus 18 ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------HhhhcHHHH
Confidence 34566666666666665543 3344444444333333333333333222 211121 245666666
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 190 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
...+-.+.. +....+.-+.....+|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++.+.|++
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666555543 334556677888899999999999888643 35788888889999999999999999999999998854
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.20 E-value=2.3 Score=34.49 Aligned_cols=91 Identities=9% Similarity=-0.039 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceE
Q 007530 402 DATASMWGSLLASCRNYR---NLELAEIAAKQLFGMEPDN-AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477 (600)
Q Consensus 402 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 477 (600)
.|+..+--.+..++.+.. +..++..+++.+....|.. -.....|+-+|.+.|++++|++..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 355555555555555543 3456777777777766642 2344567777888888888888877776543
Q ss_pred EEEEcCcccCcchHHHHHHHHHHHHHHHHCCCc
Q 007530 478 WVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYK 510 (600)
Q Consensus 478 ~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 510 (600)
|...++...-..+.++|.+.|++
T Consensus 108 ----------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ----------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------CCcHHHHHHHHHHHHHHHHhchh
Confidence 55556665555666677777764
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.14 E-value=0.67 Score=35.61 Aligned_cols=65 Identities=14% Similarity=-0.067 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGME-------PDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+..-+..+...+...++++.|..-++++++.. +..+..+..|+.+|.+.|++++|...++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678889999999999999999998732 334567889999999999999999999988754
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.61 E-value=0.22 Score=46.22 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHcC-CCCC--CHHHHHHHHHHHHH-cCChHHHHHHHHHHhcCCCC
Q 007530 375 HYSCMIDILGR-----AGLIHEAYDLILNM-PFDA--TASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 375 ~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~ 437 (600)
.|..|...|.+ -|+.++|.+.|++. .+.| +..++..+...++. .|+.+++.+.+++++..+|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 44444444444 25555555555544 2333 24455555555555 36677777777777776665
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.19 E-value=0.6 Score=49.88 Aligned_cols=54 Identities=15% Similarity=0.024 Sum_probs=50.5
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..|...|+++.|+.+.++++..-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999999885
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.08 E-value=1.3 Score=36.31 Aligned_cols=38 Identities=8% Similarity=0.208 Sum_probs=27.7
Q ss_pred CCCcchHHHHHHHHHcCCCh------hHHHHHHHHHHHcCCCCCCh
Q 007530 96 QRCIVSWNTIIGSYTTNGRE------QEAVALFINMLREGKTPYSE 135 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~p~~ 135 (600)
..|..+|=..+...-+.|++ ++..++|++.... +||+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccc
Confidence 34667777777777777887 7777888877776 67763
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.58 E-value=9.1 Score=35.97 Aligned_cols=169 Identities=8% Similarity=0.030 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHH----HHHHHHcCCCCCChhhHHHHHHH
Q 007530 69 LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL----FINMLREGKTPYSEFTVSSVLCA 144 (600)
Q Consensus 69 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~p~~~t~~~ll~~ 144 (600)
..|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+...+.+ +++|......++..
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 35666777888899999999887542 2345566777666664 44445556 88888888888887
Q ss_pred HhcCCChH-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhC---
Q 007530 145 CAAKRDVF-ECKQLHVFALK----AA--MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN--- 214 (600)
Q Consensus 145 ~~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~--- 214 (600)
+.....-+ .-..+...+++ .| ..-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+.+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 76643222 22344444443 22 2237788899999999999999999988633323566666665554444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 215 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
|...++--+. -..++ -|...+++..|..++....+
T Consensus 182 ~~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 4444432221 12222 23456777788777776543
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.98 E-value=14 Score=40.38 Aligned_cols=299 Identities=12% Similarity=0.027 Sum_probs=137.7
Q ss_pred hcCChHHHHHHHccCCCC----Cc--chHHHHHHHHHcCCChhHHHHHHHHHHHcCC-CCCC---hhh--HHHHHHHHhc
Q 007530 80 KCGLISGARKVFDEMPQR----CI--VSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYS---EFT--VSSVLCACAA 147 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~p~---~~t--~~~ll~~~~~ 147 (600)
..|+.++++.+++.-... +. ..-..+.-|.+..|..+++++++...+.... +.-+ ... -..+.-+.+-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 456667777777765431 11 1222333445666666677777766554320 0000 111 1112122222
Q ss_pred CCC-hHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHH
Q 007530 148 KRD-VFECKQLHVFALKAAMDRNVFV----GTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEE 219 (600)
Q Consensus 148 ~~~-~~~a~~~~~~~~~~g~~~~~~~----~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~ 219 (600)
.|. -+++...+..++... +..+ .-+|...|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.+.
T Consensus 466 ~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred cCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 232 223444444444321 2111 12333344455666665655554322 1 22223334445556778777
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 220 ALILFRRAQVLGLEYNQFTIS---SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 220 A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
+..+.+.+.... .| ..-|. ++..+|+..|+.....+++..+.... ..++.-...+.-+....|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 777777776531 12 12222 23345667777777777777776542 22222222222233345666666666664
Q ss_pred CCC---cCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------CHHHHHHHHHHH
Q 007530 297 IEE---KNVVLWNTMISGFSRHARS-VEVMILFEKMQQAGLHPNEQTYISVLSACSHIG---------MVEKGKSYFDLM 363 (600)
Q Consensus 297 ~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~~~~~~ 363 (600)
+.+ +.+..--++.-|....|.. .+|++++..+.. .+|..+=...+.+....| ++...++.+...
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 442 2233233333344444443 467777777764 345444333333333222 233333333333
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcC
Q 007530 364 VKQHNVLPNVFHYSCMIDILGRAG 387 (600)
Q Consensus 364 ~~~~~~~p~~~~~~~li~~~~~~g 387 (600)
..+..-.++......+..++...|
T Consensus 697 ~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HhcccccHHHHHHHHHHHHHHhcC
Confidence 222222344555555555555555
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.54 E-value=1.7 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
..-.|.-++.+.|+++.|.+.++.+++.+|++..+..
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3445667888899999999999999999998865433
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.37 E-value=1.3 Score=36.32 Aligned_cols=53 Identities=9% Similarity=-0.128 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 387 GLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 387 g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
++.++|.++|+.+ .. +.=...|......-.++|+++.|.+++.+++.+.|.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5555666665554 00 11167777777777888999999999999999888754
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.76 E-value=9.6 Score=38.11 Aligned_cols=252 Identities=6% Similarity=-0.030 Sum_probs=124.6
Q ss_pred CCchhHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC---CcchHHHHHHH----HHcCCC
Q 007530 47 RAPVRGKVCHAKIIGM-----GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR---CIVSWNTIIGS----YTTNGR 114 (600)
Q Consensus 47 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~----~~~~g~ 114 (600)
+++..|.+.+-.+.+. .......+...++..|.+.|+++...+.+..+..+ -..+-..+++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 4555555555444432 13344566777778888888887775555443321 11122222222 212222
Q ss_pred hhHH--HHHHHHHHH--cCCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCC---hhHHHHHHHHHHH
Q 007530 115 EQEA--VALFINMLR--EGKTPY---SEFTVSSVLCACAAKRDVFECKQLHVFALKA--AMDRN---VFVGTALLDVYAK 182 (600)
Q Consensus 115 ~~~A--~~~~~~m~~--~g~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~ 182 (600)
.+.. +.+.+.... .|.+-. .......+...+-..|++.+|..++..+... |.... +.++...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2211 111111110 110111 1112244566677778888888777776543 21111 3456667778888
Q ss_pred cCCHHHHHHHHccCCC--------CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH-----HHHH
Q 007530 183 CGLISDASRVFESMPE--------RN--EVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTISSV-----ICAC 246 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~--------~d--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l-----l~a~ 246 (600)
.+++..|..++.++.. ++ ..-+..++..+...+++.+|-+.|.+.... ....|...+..+ +...
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 8888888777665421 11 234566677777788888888777776432 111122222111 1111
Q ss_pred HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh--CCHHHHHHHHhcCCC
Q 007530 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC--GCVVDAYFVFSGIEE 299 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~--g~~~~A~~~~~~~~~ 299 (600)
......+ -..+.....+....++...+..|+.+|... .+++.+.+.|.....
T Consensus 270 La~~~~~-~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 270 LSPYGNL-QNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HSSCSST-THHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred hCCCCch-HHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 1111111 222222333333345666777788887654 356667777766544
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.02 E-value=0.1 Score=51.77 Aligned_cols=378 Identities=12% Similarity=0.038 Sum_probs=191.0
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHc
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 111 (600)
|...|..++.++.+.|.+++-...+....+. ..++.+=+.|+-+|++.+++.+-.+++.. ||+.--..+.+-|..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD 156 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHH
Confidence 5566889999999999999888777544443 45566778999999999987654443322 344333344444444
Q ss_pred CCChhHHHHHHHHHHHcC-------------------CCCCChhhHHHHHHHHhcCCChHHHH-----------------
Q 007530 112 NGREQEAVALFINMLREG-------------------KTPYSEFTVSSVLCACAAKRDVFECK----------------- 155 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g-------------------~~~p~~~t~~~ll~~~~~~~~~~~a~----------------- 155 (600)
.|.++.|.-+|..+..-. .--.+..||..+-.+|...+.+..|.
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv 236 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 236 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGG
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHH
Confidence 444443333332221100 01124556666666666666555543
Q ss_pred -------------HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccC----CCC-------CHHHHHHHHHHH
Q 007530 156 -------------QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM----PER-------NEVTWSSMVAGF 211 (600)
Q Consensus 156 -------------~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m----~~~-------d~~~~~~li~~~ 211 (600)
.+++..+.. -......++-|.-.|+|-. .++-.+.++.. --| ....|.-++-.|
T Consensus 237 ~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY 314 (624)
T 3lvg_A 237 NYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 314 (624)
T ss_dssp SSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHH
Confidence 333322210 1224456666666666652 22222222221 112 334567777777
Q ss_pred HhCCCHHHHHHHHHHHHHc-----------C---CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 007530 212 VQNELYEEALILFRRAQVL-----------G---LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~-----------g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (600)
.+-.+++.|... |.+. . -.+|...|-..|.-|.... +..--.++..+ ...+.+ +-.
T Consensus 315 ~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL-~prlDh-----~Rv 384 (624)
T 3lvg_A 315 DKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVL-SPRLDH-----TRA 384 (624)
T ss_dssp HHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHH-CTTCCS-----TTT
T ss_pred hcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhc-cccCCh-----HHH
Confidence 776666665432 2111 0 0122233333333332211 00000111110 001111 123
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNT-MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 356 (600)
++++.+.|++.-....+..+...|...-|- +-..|....++ .+...-+..|-+-..+..|
T Consensus 385 V~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy-------------------~~LR~SId~ydNFD~i~LA 445 (624)
T 3lvg_A 385 VNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY-------------------QALRTSIDAYDNFDNISLA 445 (624)
T ss_dssp HHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCC-------------------HHHHHTTSSCCCSCTTHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhH-------------------HHHHHHHHHhccccHHHHH
Confidence 445555555555555555555545444333 22333333333 2333333344444444444
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 357 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
.++ +++ +-.+.-..-...|.+.++++++..+.++=..-.| .+...+..|+.+.++.+++-.++.+-
T Consensus 446 ~rL-----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~ 511 (624)
T 3lvg_A 446 QRL-----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEK 511 (624)
T ss_dssp HHH-----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCS
T ss_pred HHH-----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 332 222 2333444455678889999998887665332222 23344567788888888887776443
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHH
Q 007530 437 DNAGNHLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~a~~~ 461 (600)
...+......|...=+.|-+.++
T Consensus 512 --~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 512 --RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --THHHHHHHHHTSSSSSCHHHHHH
T ss_pred --hHHHHHHHHHHhhccChHHHHHH
Confidence 34677777777777788877765
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.20 E-value=18 Score=34.28 Aligned_cols=168 Identities=10% Similarity=0.052 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHH----HHHHHcCCCCCChhhHHHHHHHH
Q 007530 70 TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF----INMLREGKTPYSEFTVSSVLCAC 145 (600)
Q Consensus 70 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~p~~~t~~~ll~~~ 145 (600)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +...+.+ +++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 4455667788899999999886432 33455667776665554 4555567 888888888888887
Q ss_pred hcCCChH-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHH
Q 007530 146 AAKRDVF-ECKQLHVFALK----AA--MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218 (600)
Q Consensus 146 ~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~ 218 (600)
.....-+ .-..+...+++ .| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+.+.+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 7665422 12233444433 33 34467788889999999999999999885322223356655555554444322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 219 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
++ |.+.-..++. |...+++..|..++....+
T Consensus 185 e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TA--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred cH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 22 2222223332 3446677777776655443
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.26 E-value=3.6 Score=32.92 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+--|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344444555555555555555555555555543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.90 E-value=3.8 Score=34.25 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC
Q 007530 378 CMIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~ 400 (600)
-+..+|.+.|++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35556666666666666666664
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.75 E-value=8.2 Score=28.87 Aligned_cols=86 Identities=8% Similarity=-0.087 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..++|..|-+.+...+- ...+--.-+......|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45556666555555442 333333444567788999999999999999999999888764 78888888888878877
Q ss_pred cCCCCCHHHHH
Q 007530 230 LGLEYNQFTIS 240 (600)
Q Consensus 230 ~g~~p~~~t~~ 240 (600)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45444443
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.35 E-value=8.7 Score=28.78 Aligned_cols=86 Identities=10% Similarity=-0.061 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..++|..|-+.+...+- ...+--.-+......|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45556666555555442 333333444566788999999999999999999999888764 67788888877777776
Q ss_pred cCCCCCHHHHH
Q 007530 230 LGLEYNQFTIS 240 (600)
Q Consensus 230 ~g~~p~~~t~~ 240 (600)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.13 E-value=44 Score=36.64 Aligned_cols=157 Identities=10% Similarity=-0.019 Sum_probs=73.6
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHhhCCHHHHHHHHhcCCC-cC-HhHHHH---HHHHHHhcCCh
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM--YAKCGCVVDAYFVFSGIEE-KN-VVLWNT---MISGFSRHARS 318 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--y~~~g~~~~A~~~~~~~~~-~~-~~~~~~---li~~~~~~g~~ 318 (600)
+...|+-+....++..+.+.. +..+...+.-+ ..-.|+.+.+..+.+.+.. .+ ..-|.+ +.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345566666666666655432 22222223222 3345666666655555432 22 222322 23345566676
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI-HEAYDLIL 397 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 397 (600)
.....++..+... ...+......+.-+....|+.+.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++.
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 5555577776653 122222222222233344555555566655532 2245554444444444444443 45666666
Q ss_pred cCCCCCCHHHH
Q 007530 398 NMPFDATASMW 408 (600)
Q Consensus 398 ~m~~~p~~~~~ 408 (600)
.+...+|..+-
T Consensus 654 ~L~~D~d~~Vr 664 (963)
T 4ady_A 654 PLTKDPVDFVR 664 (963)
T ss_dssp HHHTCSSHHHH
T ss_pred HHccCCCHHHH
Confidence 66434454433
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.60 E-value=21 Score=38.22 Aligned_cols=127 Identities=12% Similarity=-0.002 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhcCC-hHHHHHHHccCCCCCc--ch--HHHHHHHHHcCCC-hhHHHHHHHHHHHc------CCCCCChh
Q 007530 69 LTSNILINFYSKCGL-ISGARKVFDEMPQRCI--VS--WNTIIGSYTTNGR-EQEAVALFINMLRE------GKTPYSEF 136 (600)
Q Consensus 69 ~~~~~li~~y~~~g~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~~p~~~ 136 (600)
.....|+..+.-.|+ .+.|..+|+++...+. .+ ..++|..+.+.+. --+|++++.+.++. . .++...
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~-l~~~~~ 327 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND-LPPRDA 327 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT-CSSCCH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh-hccccc
Confidence 344555555555566 4778888887654322 22 2233443333332 23566666555431 1 222211
Q ss_pred -----------hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 137 -----------TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 137 -----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
....-...|...|+++.|..+-.+++...+. +-.+|..|...|.+.|+++.|.-.+..+|
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 2222345577789999999999999888543 77889999999999999999999999987
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.50 E-value=1.6 Score=42.97 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCccCCc
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD-----SEVKKEKS 475 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 475 (600)
..++.++...|+.+++...+..++..+|-+...+..|..+|.+.|+..+|.+.|+...+ .|+.|.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556667778888888888888888888888888888888888888888888877653 46665543
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.23 E-value=5.1 Score=30.19 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
+.-+...-++.+....+.|+.....+.+.||.+..++..|.++|+.+..+.|-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 444666677777777889999999999999999999999999999996555433 446777664
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.12 E-value=11 Score=28.32 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=60.4
Q ss_pred CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 47 RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 47 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
..-++|.-|-+++...|- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345788888888877663 333333344567789999999999999999999999988775 5677777777777777
Q ss_pred HcC
Q 007530 127 REG 129 (600)
Q Consensus 127 ~~g 129 (600)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 776
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.92 E-value=10 Score=28.40 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=61.1
Q ss_pred CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 47 RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 47 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
..-++|.-|-+++...|- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345778888888877663 333333344567789999999999999999999999988774 6788888888887887
Q ss_pred HcC
Q 007530 127 REG 129 (600)
Q Consensus 127 ~~g 129 (600)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 776
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.50 E-value=38 Score=38.51 Aligned_cols=165 Identities=8% Similarity=0.027 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
...++..+.+.|..+.|.++..-.+. +...--.+...|...|++++|.+.|++.. .|+..+..... ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hh
Confidence 34566667777888888776655544 44444566778899999999999998752 12222111000 00
Q ss_pred HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHHHHHHHhc----CCCcC----HhHHHHHHHHHHhcCChHHHH
Q 007530 253 IQGKQVHAVLCKTG--FGSNMFAASSLVDMYAKCGCVVDAYFVFSG----IEEKN----VVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 253 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~g~~~~A~ 322 (600)
.. ...+.... ...-..-|.-++..+.+.|.++.+.++-.. ....+ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00011100 011122344455555555555554443321 11111 125888888888999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 355 (600)
..+-.+.....+ ...+..++...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 888887765433 4556667666666665443
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.69 E-value=22 Score=28.75 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
..-.|.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 34456678889999999999999999999998643
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.59 E-value=7.3 Score=38.18 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=46.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH-----hCCCCChhH
Q 007530 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK-----AAMDRNVFV 172 (600)
Q Consensus 104 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 172 (600)
.++..+...|++++|+..+..+... .|.+...+..++.++...|+..+|.+.|+...+ .|++|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455566677777777777777665 466777777777777777777777777766543 366666554
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.28 E-value=16 Score=29.26 Aligned_cols=84 Identities=7% Similarity=-0.064 Sum_probs=49.7
Q ss_pred HHHHHHHHHH-Hc-CCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 320 EVMILFEKMQ-QA-GLHPNEQTYISVLSACSHIG---MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 320 ~A~~l~~~m~-~~-g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
+-+..|++.- +. +-.|+..|--.+..++.++. +..+|+.+++.+.+. +-.-.....--|.-++.+.|++++|.+
T Consensus 21 eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 21 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444433 22 33456655555555666554 445688888887654 211124444556667888888888888
Q ss_pred HHHcC-CCCCC
Q 007530 395 LILNM-PFDAT 404 (600)
Q Consensus 395 ~~~~m-~~~p~ 404 (600)
..+.+ ..+|+
T Consensus 100 y~d~lL~~eP~ 110 (134)
T 3o48_A 100 YVDTLFEHERN 110 (134)
T ss_dssp HHHHHHTTCTT
T ss_pred HHHHHHhhCCC
Confidence 88776 55665
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.27 E-value=42 Score=31.45 Aligned_cols=169 Identities=9% Similarity=0.044 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALIL----FRRAQVLGLEYNQFTISSVICACA 247 (600)
Q Consensus 172 ~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 247 (600)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566667888888888877433 23345667777666665 344455678888888777777765
Q ss_pred ccCchH-HHHHHHHHHHH----hCC--CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhc---CC
Q 007530 248 GLAALI-QGKQVHAVLCK----TGF--GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH---AR 317 (600)
Q Consensus 248 ~~g~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 317 (600)
....-+ .-.++...+++ .|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533111 12333444443 332 237788889999999999999999888744333555555555444443 44
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 007530 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 366 (600)
..++-- ..-..++ -|.-.+++..|..+|+...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 433221 1122233 234568899999888877543
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.71 E-value=15 Score=27.67 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 217 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
.=+..+-++.+....+.|++....+.+.||.+.+++..|.++++-+...- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33455555666666788888888888888888888888888888776543 222345555543
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.48 E-value=14 Score=29.42 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
+.-+...-++.+....+.|+.......+.+|.+.+++..|.++|+-+..+.| +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666667777778899999999999999999999999999999965544 33456777764
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.81 E-value=59 Score=36.98 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=12.7
Q ss_pred HHHHHHHhhCCHHHHHHHHhcC
Q 007530 276 SLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 276 ~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
.+..+|..+|++++|.+.|.+.
T Consensus 847 l~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3445556666666666666544
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.52 E-value=35 Score=28.47 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHHHHhcCChHHHHHHHccCC-----CCCc-------chHHHHHHHHHcCCChhHHHHHHHHHHHcCC-CCCChhhHHHH
Q 007530 75 INFYSKCGLISGARKVFDEMP-----QRCI-------VSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYSEFTVSSV 141 (600)
Q Consensus 75 i~~y~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~p~~~t~~~l 141 (600)
+..+...|.++.|+-+.+.+. .|++ .+...+.+++...|++..|...|++.++... ++-+..+..++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 455556667776666655432 2332 1345555666677777777777766544321 11111111111
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC
Q 007530 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE 198 (600)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 198 (600)
-. ...... ......+..+---+..+|.+.++.++|+.+++.++.
T Consensus 107 ~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 107 GN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00 000000 001122334444566777777777777777777764
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.36 E-value=59 Score=30.71 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILF----RRAQVLGLEYNQFTISSVICACAG 248 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 248 (600)
|.++..=|.+.+++++|.+++-+ -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555567888888888877432 233455667766665554 444556788888877777777665
Q ss_pred cCchH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHH
Q 007530 249 LAALI-QGKQVHAVLCK----TG--FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321 (600)
Q Consensus 249 ~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 321 (600)
...-+ .-..+...+++ .| -.-|+.....+...|.+.+++.+|+.-|-.-.++....+..|+.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 54311 11233333333 33 234677888899999999999999988853333333566555444443333222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 322 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+|...-..++. |.-.+++..|..+++...+
T Consensus 186 -------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 22222233333 4445788888887776654
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.98 E-value=1.2e+02 Score=31.58 Aligned_cols=393 Identities=11% Similarity=-0.026 Sum_probs=192.6
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 007530 54 VCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132 (600)
Q Consensus 54 ~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 132 (600)
++-..+.+.. .+.....-+.-+..+++.+++.....++.. +..+...--....+....|+..+|....+.+-..|..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~- 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS- 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-
Confidence 5666666543 222334456667778888999999997776 3233333334566677788888888888777776623
Q ss_pred CChhhHHHHHHHHhcCCChHHH--HHHHHHHHHhC-----------CCCCh-hHHHHHHHHHHHcCCHHHHHHHHccCCC
Q 007530 133 YSEFTVSSVLCACAAKRDVFEC--KQLHVFALKAA-----------MDRNV-FVGTALLDVYAKCGLISDASRVFESMPE 198 (600)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~ 198 (600)
.+..+..++..+...|.+... .+=+..+...| +.++. .....++..+.+-..+ ........
T Consensus 135 -~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~~- 209 (618)
T 1qsa_A 135 -QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG- 209 (618)
T ss_dssp -CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-
T ss_pred -CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhccC-
Confidence 344566777777655544332 12222222222 11111 1122222222222222 22222111
Q ss_pred CCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHccCchHHHHHHHHHHHHhCCCCch
Q 007530 199 RNEV---TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC----ACAGLAALIQGKQVHAVLCKTGFGSNM 271 (600)
Q Consensus 199 ~d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~~~~~~~~~~~ 271 (600)
++.. ....-+.-+++ .+.+.|..+|......+ ..+......+-. .....+...++...+....... .+.
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~ 285 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QST 285 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCH
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CCh
Confidence 1111 11112333333 37788888888876543 223322222222 2233342444455555444332 233
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCCcC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKN---VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 348 (600)
....-.+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|..+... . +|-.++.+ .
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~ 358 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-Q 358 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-H
Confidence 334444555567789999999998887532 222222444667788888888888887642 1 34444422 2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCc---cH-H--HHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLP---NV-F--HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p---~~-~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 422 (600)
+.|..-.. ......+ .. . .--.-+..+...|...+|...+..+....+......+.......|..+
T Consensus 359 ~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~ 430 (618)
T 1qsa_A 359 RIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWD 430 (618)
T ss_dssp HTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCCCCC--------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChH
Confidence 22321000 0000000 00 0 111224456678888888777665522234333344444455677777
Q ss_pred HHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 007530 423 LAEIAAKQLFGMEP---DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 423 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 472 (600)
.+.....+....+. .-|..|..++.-+++.-.++...-.--...|.+..+
T Consensus 431 ~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 431 LSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 77766654433220 112344455555555444444433222223444443
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.62 E-value=1e+02 Score=30.59 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHh-cCC--Ccc--H
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-----EQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNV--LPN--V 373 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~--~p~--~ 373 (600)
....|...|...|++.+|..++.++...-...+ ...+...+..|...+++.+|..++.++... ... .|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345577788899999999999999875422222 235566778899999999999999887321 111 222 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
..|.+++..+...+++.+|...|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46788888888999999998777665
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.01 E-value=66 Score=29.26 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=69.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhc
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV----FHYSCMIDILGRA 386 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~ 386 (600)
.+.+.|..++|++....-++.. +-|...=..++..++-.|+++.|.+-++...+. .|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556788888888887777752 335555556677778888888888888777532 4443 234433332
Q ss_pred CCHHHH-HHHHHcC--C--CCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHhcCCCCCcc
Q 007530 387 GLIHEA-YDLILNM--P--FDATASMWGSLLASCRN--YRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 387 g~~~~A-~~~~~~m--~--~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
+.. .++|..- | +.....-...|+.+... .|+.+.|..+-.++++.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 1233221 1 11122222344444443 58888888888888877666544
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.00 E-value=65 Score=27.80 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=70.4
Q ss_pred HHHHHHHHcC-CCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 390 HEAYDLILNM-PFDATA---SMWGSLLASCRNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
+.+...|... ..+.|+ ..|-.++..| ..++...+..+|..+.. +.-.-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444443 233454 3555555544 23446688888888876 666677889999999999999999999998
Q ss_pred HhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCCccC
Q 007530 464 LIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512 (600)
Q Consensus 464 ~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 512 (600)
.-.+++-.| .+...+...+...+|.+.+++.|
T Consensus 140 ~GI~~~A~P-----------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCRP-----------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCBS-----------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCcc-----------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 888766432 33444555577788888887433
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.94 E-value=12 Score=34.11 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 383 LGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
+.+.|.+++|+.....- ...| |...-..|...++..|++++|.+-++.+.+++|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34556666665554432 2222 4455555666666666666666666666666665
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.87 E-value=48 Score=26.49 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 117 ~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
+..+-++.+...+ +.|++......+++|.+.+|+..|.++++-+...- .+...+|..+++
T Consensus 71 ElrrglN~l~~~D-lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 4555566666667 78899999999999999999999999988876542 333455666654
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.57 E-value=99 Score=32.45 Aligned_cols=80 Identities=8% Similarity=-0.075 Sum_probs=37.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHh---CCCH
Q 007530 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ---NELY 217 (600)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~---~g~~ 217 (600)
...++.-.|.++.|.+++... ...+.+.+...+. ..|-+.....++..=+..-..-+..||..|.+ ..+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~---~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~ 372 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLA---SLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDP 372 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHH---HTTC-----------------CHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHH---HcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCH
Confidence 444555678899888876543 1222222222222 23333321111111001012236677777765 5788
Q ss_pred HHHHHHHHHH
Q 007530 218 EEALILFRRA 227 (600)
Q Consensus 218 ~~A~~~~~~m 227 (600)
.+|++.|--+
T Consensus 373 ~~Al~Y~~li 382 (661)
T 2qx5_A 373 RVAVEYLVLI 382 (661)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHHHH
Confidence 8888887766
No 271
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.84 E-value=69 Score=29.96 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=42.7
Q ss_pred HcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 397 LNMPFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 397 ~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...+.+|. ..+..+-+..+.+++|+..|..+.++++++.|... ..++|.++...-...
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 33355554 45778888889999999999999999999998632 345577777666543
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.29 E-value=55 Score=29.44 Aligned_cols=46 Identities=7% Similarity=-0.046 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhhCCHHHHHHHHh
Q 007530 250 AALIQGKQVHAVLCKTGFGSNMF--AASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
+.......+...+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333344555555555444321 11223334444555555555554
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.54 E-value=1.2e+02 Score=29.41 Aligned_cols=277 Identities=11% Similarity=0.042 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCC--------CCcchHHHHHHHHHcC-CChhHHHHHHHHHHHcCCCCCChhhH---
Q 007530 71 SNILINFYSKCGLISGARKVFDEMPQ--------RCIVSWNTIIGSYTTN-GREQEAVALFINMLREGKTPYSEFTV--- 138 (600)
Q Consensus 71 ~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~p~~~t~--- 138 (600)
...|...|.+.|+.++..+++..... +....-..||..+... +..+.-.++..+.++.. .-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~r~flr~ 99 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--HHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34555666666666666666655432 1222344555555443 22233333333333221 1111233
Q ss_pred ---HHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHccCCC------CCHHHH
Q 007530 139 ---SSVLCACAAKRDVFECKQLHVFALKAAMDRN-----VFVGTALLDVYAKCGLISDASRVFESMPE------RNEVTW 204 (600)
Q Consensus 139 ---~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~~g~~~~A~~~f~~m~~------~d~~~~ 204 (600)
..+...+...|++.+|..++..+.+.--..| ..++-.-+.+|...+++.++...+..... +++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1355566666666666666666655311111 23455556666677777666665543311 122111
Q ss_pred H----HHHHHHH-hCCCHHHHHHHHHHHHHc-C--CCC---CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhH
Q 007530 205 S----SMVAGFV-QNELYEEALILFRRAQVL-G--LEY---NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273 (600)
Q Consensus 205 ~----~li~~~~-~~g~~~~A~~~~~~m~~~-g--~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 273 (600)
. .-...+. ..++|++|...|-+.... . ..| +...|. ++.+.......+...-+-......-..|....
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIMLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHcCCHHHHHHHhccccccccCCccHHH
Confidence 1 1112344 677777777776655321 0 011 112232 22222222222222111112111113455555
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-CHHHHHHHHH
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG----LHP-NEQTYISVLS 345 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~ll~ 345 (600)
+..|+.+|. .+++.....++.... ..|...... ...+.+.+...+ +.| ..+++..+..
T Consensus 259 l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 259 MKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeHHHHHH
Confidence 666666554 456655555554432 234432110 112222222211 123 3455666665
Q ss_pred HHHccCCHHHHHHHHHHHHHh
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~ 366 (600)
.+.- ..++++..+..|+..
T Consensus 325 ~l~l--s~~evE~~L~~lI~d 343 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILD 343 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHT
T ss_pred HHCc--CHHHHHHHHHHHHHC
Confidence 5543 678888888888754
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.70 E-value=83 Score=26.91 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 007530 66 NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145 (600)
Q Consensus 66 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~ 145 (600)
+|..+-...+..+++.|..+....+.+.+..+|...-...+.++.+.|.. ++...+..+... +|...-...+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~aL 105 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD----EDGWVRQSAAVAL 105 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC----CCHHHHHHHHHHH
Confidence 44444445555555555543334444444445544444455555555543 233333333322 3444555555555
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007530 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFR 225 (600)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 225 (600)
...++.+....+. .++ -.++..+-...+.+..+.|+-+....+.+.+..+|...-...+.++.+.+. .++...+.
T Consensus 106 ~~~~~~~~~~~L~-~~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 106 GQIGDERAVEPLI-KAL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HHHCCGGGHHHHH-HHT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHH-HHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 5555433222222 121 234555555555555555543333333333334444444444444444443 23334444
Q ss_pred HHH
Q 007530 226 RAQ 228 (600)
Q Consensus 226 ~m~ 228 (600)
++.
T Consensus 181 ~~l 183 (211)
T 3ltm_A 181 KLA 183 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.71 E-value=84 Score=25.72 Aligned_cols=49 Identities=4% Similarity=-0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 423 LAEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 423 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
.+..+|..+.. +.-..+..|...+..+...|++.+|.++++.-.+++-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 37777877776 55566778888899999999999999999887776543
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.33 E-value=95 Score=26.25 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=32.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHh
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 213 (600)
+...-...+.++...++.+....+.. ++ -.++..+-...+.+..+.|+-+....+.+.+..++...-...+.++.+
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444455555554444322222211 11 133444545555555555543333333333333444444444444444
Q ss_pred CC
Q 007530 214 NE 215 (600)
Q Consensus 214 ~g 215 (600)
.|
T Consensus 165 ~~ 166 (201)
T 3ltj_A 165 IG 166 (201)
T ss_dssp HC
T ss_pred hC
Confidence 44
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.90 E-value=58 Score=32.18 Aligned_cols=96 Identities=11% Similarity=-0.037 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCC------cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHH--
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIEE------KNVVLWNTMISGFSRHARSVEVMILFEKMQQA---GLHPNEQTYI-- 341 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~-- 341 (600)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-.+|..+...+++..+...+.+.... +-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777888888888877776653 22445666777777788888888887776542 2233322111
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcC
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHN 368 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~ 368 (600)
.-...+...+++..|-+.|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111223456788888887777655444
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.99 E-value=1.3e+02 Score=29.55 Aligned_cols=96 Identities=6% Similarity=-0.084 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH--
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPN--EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM-- 379 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-- 379 (600)
++..+..-|.+.|+.++|.+.+.++......+. ...+..+++.+...+++..+.....++.....-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556678889999999999999999988644443 3467778889999999999999999885433223332222211
Q ss_pred --HHHHHhcCCHHHHHHHHHcC
Q 007530 380 --IDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 380 --i~~~~~~g~~~~A~~~~~~m 399 (600)
.-.+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 12234578899988877654
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.85 E-value=87 Score=25.62 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCC---CHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHH
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNEL--YEEALILFRRAQVLGLEYNQF 237 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 237 (600)
.+.++.-|...|+.++|.+.++++..| ..+...++..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 466888899999999999999998765 23455556666665432 456778888888777555443
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.10 E-value=62 Score=29.09 Aligned_cols=204 Identities=10% Similarity=-0.001 Sum_probs=105.1
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhCCCCchh---HHHHHHHHHHhcCChHHHHHHHccCCCC---CcchHHHHHHHHHcC
Q 007530 39 TLQSCARERAPVRGKVCHAKIIGMGLNNDTL---TSNILINFYSKCGLISGARKVFDEMPQR---CIVSWNTIIGSYTTN 112 (600)
Q Consensus 39 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 112 (600)
.|...++.|+++..+ .+++.|..++.. .....+...+..|+.+-+..+++.-..+ |...++.+ ...+..
T Consensus 8 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAAIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHH
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHc
Confidence 444555667765444 555556544322 2224455556788888888787754433 22223333 333445
Q ss_pred CChhHHHHHHHHHHHcCCCCCChh---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh------------HHHHHH
Q 007530 113 GREQEAVALFINMLREGKTPYSEF---TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF------------VGTALL 177 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------~~~~li 177 (600)
|+.+ +++.+.+.| ..++.. -.+.+ ...+..|+.+ +.+.+++.|..++.. ...+.+
T Consensus 83 ~~~~----~v~~Ll~~g-~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 83 GSVK----LLKLFLSKG-ADVNECDFYGFTAF-MEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp TCHH----HHHHHHHTT-CCTTCBCTTCCBHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred CCHH----HHHHHHHcC-CCCCccCcccCCHH-HHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 5543 445555566 444322 22333 3334556654 444555666554432 112345
Q ss_pred HHHHHcCCHHHHHHHHccCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCc
Q 007530 178 DVYAKCGLISDASRVFESMPE----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT--ISSVICACAGLAA 251 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~ 251 (600)
...++.|+.+-+..+++.... .|...++.+..+ +..++.....++++.+.+.|..++... -.+.+...+..|.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 566778999888888876321 233333333333 445665555667777777777665321 1122333345566
Q ss_pred hHHHHHH
Q 007530 252 LIQGKQV 258 (600)
Q Consensus 252 ~~~a~~~ 258 (600)
.+.+..+
T Consensus 232 ~~~v~~L 238 (285)
T 1wdy_A 232 LGLVQRL 238 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.07 E-value=1.1e+02 Score=25.78 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHccCC
Q 007530 335 PNEQTYISVLSACSHIGM 352 (600)
Q Consensus 335 p~~~t~~~ll~a~~~~g~ 352 (600)
++...-...+.++...|.
T Consensus 150 ~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444444
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.99 E-value=90 Score=24.65 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCC---CHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHH
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNEL--YEEALILFRRAQVLGLEYNQF 237 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 237 (600)
.+.++.-|...|+.++|.+.++++..| ..+...++..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456888899999999999999998765 23445556666666542 466788888888777555443
No 283
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=50.53 E-value=11 Score=25.19 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChh
Q 007530 112 NGREQEAVALFINMLREGKTPYSEF 136 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~ 136 (600)
.-+++.|+..|.++...|.+||+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578999999999988877888765
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.78 E-value=1.1e+02 Score=25.37 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=36.9
Q ss_pred HHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 424 AEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 424 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
...+|..+.. +.-.-+..|...+..+...|++.+|.++++.-.+++-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5567777765 5556677888889999999999999999988877664
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.60 E-value=1.9e+02 Score=30.39 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~ 147 (600)
.| ++|--+.+.|.+++|.++.++.... +.--...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~--~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN--IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG--C-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh--HhhhhHHHHHHHHHHHh
Confidence 45 3555566788888888877665432 21112355666666653
No 286
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.63 E-value=1.2e+02 Score=28.74 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCCC---HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCC
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPERN---EVTWSSMVAGFVQNE-LYEEALILFRRAQVLGLEYN 235 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~ 235 (600)
...++.-|...|+.++|.+.++++..|. .+....+..++-+.. .-+.+..++..+.+.|+-+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 4568888999999999999999998763 223333333333322 23556667777776665433
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.27 E-value=1.1e+02 Score=26.67 Aligned_cols=54 Identities=9% Similarity=-0.115 Sum_probs=30.5
Q ss_pred HHHhccCCchhHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHccC
Q 007530 41 QSCARERAPVRGKVCHAKIIGMGLNNDTL--TSNILINFYSKCGLISGARKVFDEM 94 (600)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~ 94 (600)
...+..|+.+..+.+.+.+.+.|..++.. .....+...+..|+.+-+..+++.-
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 33445677777777777666666544322 1122344445567777666666543
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.74 E-value=83 Score=24.87 Aligned_cols=62 Identities=10% Similarity=0.189 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCcC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKN---VVLWNTMISGFSRHAR--SVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 335 (600)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3457778888888888888888887552 2344445555555432 356677777777666543
No 289
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=44.36 E-value=18 Score=26.37 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHHHHHHHCCCccCCcccccccchhHHhhHhhHHHHHHHHHHccc
Q 007530 488 PRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLM 543 (600)
Q Consensus 488 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l~~h~~~~a~~~~~~ 543 (600)
++..+++..+++..++++..|+.||...+-. ....+-++.+...||-.
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~e 60 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEEE 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhccc
Confidence 5677889999999999999999999654311 12345566677777754
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.95 E-value=1.3e+02 Score=26.05 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=9.5
Q ss_pred HHHHHcCCHHHHHHHHccC
Q 007530 178 DVYAKCGLISDASRVFESM 196 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m 196 (600)
...+..|+.+-+..+++..
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHcC
Confidence 3334555555555555443
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.01 E-value=1.6e+02 Score=24.99 Aligned_cols=18 Identities=6% Similarity=-0.008 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 007530 198 ERNEVTWSSMVAGFVQNE 215 (600)
Q Consensus 198 ~~d~~~~~~li~~~~~~g 215 (600)
.+|...-...+.++.+.+
T Consensus 61 ~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIG 78 (211)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhC
Confidence 333333333333333333
No 292
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=41.41 E-value=10 Score=22.91 Aligned_cols=17 Identities=29% Similarity=0.598 Sum_probs=12.1
Q ss_pred CCCCCcEEEEecccccCCchh
Q 007530 545 LCPGVPIRIMKNLRICGDCHS 565 (600)
Q Consensus 545 ~~~~~~~~~~~~~~~c~~~~~ 565 (600)
.|.+.++ +||+|.+|+.
T Consensus 9 ~ple~~~----~YRvC~~Cgk 25 (44)
T 2lo3_A 9 DPLDKPI----QYRVCEKCGK 25 (44)
T ss_dssp CCCCCCC----CEEECTTTCC
T ss_pred cccCccc----cchhhcccCC
Confidence 3444554 8999999984
No 293
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=39.79 E-value=9 Score=22.95 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=12.0
Q ss_pred CCccccc-ccccccCCCC
Q 007530 583 LNRFHHF-TNGSCSCWDF 599 (600)
Q Consensus 583 ~~~~h~~-~~g~csc~~~ 599 (600)
|-.-|.. .+|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4444555 6899999976
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.61 E-value=1.6e+02 Score=26.04 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=16.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 007530 207 MVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
-+..+....++++|++++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35567777788888877776643
No 295
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.26 E-value=1.3e+02 Score=27.28 Aligned_cols=21 Identities=10% Similarity=-0.100 Sum_probs=10.3
Q ss_pred HHHHHHHcCCHHHHHHHHccC
Q 007530 176 LLDVYAKCGLISDASRVFESM 196 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m 196 (600)
.+...+..|+.+-+..+++.-
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHhCC
Confidence 334444555555555555443
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.16 E-value=2.8e+02 Score=26.40 Aligned_cols=80 Identities=9% Similarity=0.067 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG--MVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
..+.++.-|...|+.++|...++++..-.+.+ .+....+..+.-+.+ ..+...+++..+.+ .|+-+.......+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~-~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHH
Confidence 45677888888888888888888875321111 334445555555543 34557777777754 355554444444444
Q ss_pred HHHh
Q 007530 382 ILGR 385 (600)
Q Consensus 382 ~~~~ 385 (600)
.+..
T Consensus 297 vl~~ 300 (358)
T 3eiq_C 297 IYNE 300 (358)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.44 E-value=1.1e+02 Score=27.25 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=47.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 308 MISGFSRHARSVEVMILFEKMQQA--GLHP----NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
-+..+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHH
Confidence 355666777888888887766542 2222 1111222232222222233334444444 22 445556667778
Q ss_pred HHHhcCCHHHHHHHHHc
Q 007530 382 ILGRAGLIHEAYDLILN 398 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~ 398 (600)
.+.+.|+.++|.++|-+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 88899999999888754
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.39 E-value=75 Score=26.01 Aligned_cols=62 Identities=10% Similarity=0.189 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCcC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKN---VVLWNTMISGFSRHAR--SVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 335 (600)
.+.++.-|...|+.++|...++++..|. .....++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3457777888888888888888876552 2344444555554322 345667777777666443
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.05 E-value=3.1e+02 Score=30.28 Aligned_cols=85 Identities=6% Similarity=-0.157 Sum_probs=48.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCC----------------
Q 007530 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDAT---------------- 404 (600)
Q Consensus 343 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 404 (600)
++..|...|..+-+.++...+ . .+...--.+..+|...|++++|.+.|++. ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~----~--~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL----N--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC----C--SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc----C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 566677777777665544322 1 12222224566777888888888888876 21110
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 405 -------ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 405 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
..-|.-++..+..++-++-+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11334445555556666666666666664
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.87 E-value=2.7e+02 Score=25.83 Aligned_cols=70 Identities=9% Similarity=0.093 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHhcCCCccHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM--VEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
..+.++.-|...|+.++|...++++..-.+.| .+....+..+.-+.++ .+...+++..+.+. |+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHH
Confidence 35567777888888888888888874211111 2334444555554332 45566777777543 54444333
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.49 E-value=1.4e+02 Score=28.20 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=46.3
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHH
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLT--SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 106 (600)
...|..-.+.+..|+ ..|+.+..+ .+++.|..++... ....+...+..|+.+-+.-+++.-...+...-.+.+
T Consensus 14 ~~~d~~g~t~L~~Aa-~~g~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L 88 (364)
T 3ljn_A 14 IKSDDENMEKIHVAA-RKGQTDEVR----RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPI 88 (364)
T ss_dssp --CCHHHHHHHHHHH-HHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred cccCCCCCCHHHHHH-HcCCHHHHH----HHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence 344555555554444 456654444 4445565443211 122344445667777777777655443332222233
Q ss_pred HHHHcCCChhHHHHHHHHHHHcC
Q 007530 107 GSYTTNGREQEAVALFINMLREG 129 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g 129 (600)
...+..|+.+-+..+++.-...|
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhccccC
Confidence 33445666665555555433334
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.50 E-value=2.6e+02 Score=24.95 Aligned_cols=243 Identities=8% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHH-HhCC
Q 007530 89 KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFAL-KAAM 166 (600)
Q Consensus 89 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~-~~g~ 166 (600)
.++..+..+|...-...+.++.+.| ..+++..+..+.... +...-...+.++...+ .......++..+. ..--
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Q ss_pred CCChhHHHHHHHHHHHcC------CHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 167 DRNVFVGTALLDVYAKCG------LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240 (600)
Q Consensus 167 ~~~~~~~~~li~~y~~~g------~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 240 (600)
.++..+-...+.+..+.| ..+-...+...+..+|...-...+.+..+.|+ .+++..+.++.. .++...-.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~ 177 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRN 177 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHH
Q ss_pred HHHHHHHccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCCh
Q 007530 241 SVICACAGLA--ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318 (600)
Q Consensus 241 ~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 318 (600)
..+.+....+ ..+....+...+ -.++..+-...+.++.+.|+......+...+..++ .-...+.++.+.|.
T Consensus 178 ~a~~aL~~~~~~~~~~~~~L~~~l----~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~- 250 (280)
T 1oyz_A 178 WAAFAININKYDNSDIRDCFVEML----QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD- 250 (280)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHT----TCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-
T ss_pred HHHHHHHhhccCcHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
.+++..+.++... .++.......+.+..+
T Consensus 251 ~~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 251 KTLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp GGGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.96 E-value=1.5e+02 Score=24.82 Aligned_cols=16 Identities=0% Similarity=0.106 Sum_probs=9.3
Q ss_pred HhcCChHHHHHHHccC
Q 007530 79 SKCGLISGARKVFDEM 94 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~~ 94 (600)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3456666666666543
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.42 E-value=58 Score=29.02 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=44.3
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChh-------hHHHHHHHHh--cCCChHHHHHHHHHHHHhC---------CCCC
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEF-------TVSSVLCACA--AKRDVFECKQLHVFALKAA---------MDRN 169 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~ 169 (600)
..++.|+.+....+++.+.+.| ..++.. -.+.+..|+. ..|+.+-++.+++.-...+ +...
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 3456677777766777666665 444422 2233444432 4566666666655543311 0000
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccC
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESM 196 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m 196 (600)
.....+.+...+..|+.+-+.-+++.-
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 001122344445667777776666643
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.84 E-value=1.3e+02 Score=25.98 Aligned_cols=20 Identities=5% Similarity=-0.003 Sum_probs=9.5
Q ss_pred HHHHHhcCChHHHHHHHccC
Q 007530 75 INFYSKCGLISGARKVFDEM 94 (600)
Q Consensus 75 i~~y~~~g~~~~A~~~~~~~ 94 (600)
+...++.|+.+-+..+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33344455555555555443
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.83 E-value=1.4e+02 Score=30.11 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHH--HH-HHHHHHHHhcCCHHHHHHHHHc
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV--LPNVF--HY-SCMIDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~--~~-~~li~~~~~~g~~~~A~~~~~~ 398 (600)
...++.+++.|.+.+.++.|..+..+.. +.. .++.. .| -.+...+.-.+++.+|.+.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3456667777777777777777777652 211 11111 11 1233445556777777666654
No 307
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.73 E-value=2.5e+02 Score=24.01 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 389 IHEAYDLILNMPFDATAS-------MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 389 ~~~A~~~~~~m~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
++.|..+++.+...-|.. .--..+..|.+.|.+++|.+++++...-.+.+...-.-|..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 456666666664332211 11234456778888888888888887766555444333333
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.08 E-value=1.5e+02 Score=27.57 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCC---CHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHHH
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNEL--YEEALILFRRAQVLGLEYNQFT 238 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 238 (600)
.+.++.-|...|+.++|.+.++++..| ..+...++..++-+.++ .+....++..+...|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456788888888999999888888765 23344555555555433 4556677888777765544433
No 309
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.68 E-value=2.6e+02 Score=23.39 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHcCC
Q 007530 373 VFHYSCMIDILGRAG-LIHEAYDLILNMP 400 (600)
Q Consensus 373 ~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 400 (600)
.....-++..+.+.| .++.+..+++.+.
T Consensus 136 ~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 136 RNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 344455566666666 3444555555543
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.39 E-value=1.7e+02 Score=24.31 Aligned_cols=151 Identities=9% Similarity=0.049 Sum_probs=69.2
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHHcCCH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFV--GTALLDVYAKCGLI 186 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~ 186 (600)
.+..|+.+....++..-...- -..|..-.+.+..+ +..|+.+ +.+.+++.|..++... ..+.+...+..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 355677766665554221000 11222223333333 3445544 4445556666554321 22344555677888
Q ss_pred HHHHHHHccCC-C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHHHccCchHHHHHH
Q 007530 187 SDASRVFESMP-E---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEY---NQFTISSVICACAGLAALIQGKQV 258 (600)
Q Consensus 187 ~~A~~~f~~m~-~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p---~~~t~~~ll~a~~~~g~~~~a~~~ 258 (600)
+-+..+++.-. . +|...++.+ ...+..|+.+-+..+++ .| ..+ |..-.+.+..++........-.++
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 88888875432 1 222222222 23445666654444433 33 222 222233343343322223333556
Q ss_pred HHHHHHhCCCCc
Q 007530 259 HAVLCKTGFGSN 270 (600)
Q Consensus 259 ~~~~~~~~~~~~ 270 (600)
.+.+++.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 666677776554
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.33 E-value=3.7e+02 Score=25.86 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 383 LGRAGLIHEAYDLILNMP--FDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
.++.|..+-...+++.-. ...+...++.| ......|+.+....+++.-...+
T Consensus 252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGVMVD 305 (437)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTT
T ss_pred HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCccCC
Confidence 345666665555554421 01111112222 23335667776666666544443
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.21 E-value=6.1e+02 Score=27.88 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
++..+...|..+-|.++..-.+. +...--.+..+|...|++++|.+.|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66777788999988887777765 44444567788999999999999998753
No 313
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=26.93 E-value=4.4e+02 Score=25.46 Aligned_cols=87 Identities=7% Similarity=0.032 Sum_probs=41.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMP--FDATASM---WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
.|....+..++.+| +.+++.+...+++... +..|... +..|..... +..+.++ ..|-..-....
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 45555555555554 4556666666665542 3334432 111111111 1111222 23444445555
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++..+.- ..+++....-.|...|
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCC
Confidence 5554432 5667777777776655
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.91 E-value=63 Score=24.03 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=31.9
Q ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007530 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALI 222 (600)
Q Consensus 184 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~ 222 (600)
...+.|.++++.++.+...+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468889999999999988999999999987777665543
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.66 E-value=66 Score=23.92 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHh-c-CChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHH
Q 007530 54 VCHAKIIGMGLNNDTLTSNILINFYSK-C-GLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAV 119 (600)
Q Consensus 54 ~~~~~~~~~g~~~~~~~~~~li~~y~~-~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 119 (600)
.+++.++..|+-. ..-...+- .. . .+.+.|+++++.++.+...+|..++.++...|+..-|-
T Consensus 25 ~vld~L~~~~vlt-~~~~e~I~---~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELFR-PHMIEDIQ---RAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSSC-HHHHHHHH---TSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCCC-HHHHHHHH---hccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 3566666666432 22222211 12 2 46889999999999999999999999998777766553
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.26 E-value=3.1e+02 Score=23.52 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=40.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----hHHHHHHHHHHHHhCCC
Q 007530 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA-----LIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~~ 268 (600)
.+..+.+.|+-.+-+|.+.| .|....-..++.|....|. +..+...++.....|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45789999999999999999 8877777777777766663 33444555555555543
No 317
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.07 E-value=3.3e+02 Score=23.41 Aligned_cols=83 Identities=8% Similarity=0.093 Sum_probs=50.9
Q ss_pred HHHHHHHHccCCC--CCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 007530 186 ISDASRVFESMPE--RNEV---TWSSMVAGFVQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVH 259 (600)
Q Consensus 186 ~~~A~~~f~~m~~--~d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 259 (600)
++.+.+.|...+. .|+. .|-..+..+ ..+...++.++|..|...|+--. ..-|......+...|++.+|..++
T Consensus 60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455556665543 3433 344444333 23446688888888887776543 344556666667777888888887
Q ss_pred HHHHHhCCCC
Q 007530 260 AVLCKTGFGS 269 (600)
Q Consensus 260 ~~~~~~~~~~ 269 (600)
..-++.+-.|
T Consensus 139 ~~GI~~~A~P 148 (202)
T 3esl_A 139 ELGAENNCRP 148 (202)
T ss_dssp HHHHHTTCBS
T ss_pred HHHHHcCCcc
Confidence 7777776665
No 318
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=25.00 E-value=17 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=18.3
Q ss_pred CcEEEecCCcccccccccccCCC
Q 007530 576 RETIVRDLNRFHHFTNGSCSCWD 598 (600)
Q Consensus 576 ~~~~~~d~~~~h~~~~g~csc~~ 598 (600)
+.|=+.|.+..|+|+||+-+-.|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 45678899999999999976443
No 319
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.95 E-value=4.2e+02 Score=24.61 Aligned_cols=130 Identities=11% Similarity=0.091 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHHcC----CCCCChhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 113 GREQEAVALFINMLREG----KTPYSEFTVSSV---LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g----~~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
-.-++|..+|..+...- ...|+....... +..+.+.- --+++..+.+.|+.|..++..-++..|++.=.
T Consensus 163 ~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 163 MSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY----HRDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp SCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHH----CHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 34567888887776431 123333222111 11121111 13577777888888888888888888888878
Q ss_pred HHHHHHHHccCCC--CCHHHHHH--HHH----HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 186 ISDASRVFESMPE--RNEVTWSS--MVA----GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249 (600)
Q Consensus 186 ~~~A~~~f~~m~~--~d~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 249 (600)
++.+.++||.+.. .....+-+ ++. ...+..+.++.+.+++.... ..+......++.-....
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhC
Confidence 8888888886643 22222221 111 12334577777777765322 12334445555433333
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.00 E-value=97 Score=26.81 Aligned_cols=203 Identities=11% Similarity=0.065 Sum_probs=96.2
Q ss_pred HhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh---HHHHHHHHhcCCChH
Q 007530 79 SKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT---VSSVLCACAAKRDVF 152 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t---~~~ll~~~~~~~~~~ 152 (600)
++.|+++....+++.-.. ++..-+ +.+...++.|+.+ +++.+.+.| ..++... -.+.+...+..|+.+
T Consensus 17 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~-~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 17 TQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKG-AIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTT-CCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcC-CcchhhcCCcCCChhHHHHHcCCHH
Confidence 456666666666654332 222222 2344455667664 344444555 3222111 112333334455554
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007530 153 ECKQLHVFALKAAMDRNVF--VGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (600)
- .+.+++.|..++.. ...+.+...+..|+.+-+..+++.-.. .|...++.+..+....+ ..+..+++
T Consensus 91 ~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~~L--- 162 (240)
T 3eu9_A 91 M----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-SVDPTRLL--- 162 (240)
T ss_dssp H----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC-SSTTHHHH---
T ss_pred H----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC-hHHHHHHH---
Confidence 3 44455666554432 122345556677888877777765333 23333344444443433 33333333
Q ss_pred HHcCCCCCHHH---HHHHHHHHHccCchHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhhCCHHHHHHHHhcCCC
Q 007530 228 QVLGLEYNQFT---ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF--AASSLVDMYAKCGCVVDAYFVFSGIEE 299 (600)
Q Consensus 228 ~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~y~~~g~~~~A~~~~~~~~~ 299 (600)
.+.|..++... -.+.+...+..|..+.++ .+++.|..++.. ...+-+....+.|+.+-+..+++...+
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS----LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH----HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 33443333211 112334445566665444 444556555422 122345666777888877777665443
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.64 E-value=4.6e+02 Score=24.57 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCcCH---hHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCC
Q 007530 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNV---VLWNTMISGFSRHA-RSVEVMILFEKMQQAGLH 334 (600)
Q Consensus 275 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~ 334 (600)
..++.-|...|+.++|...++++..|.. ....++..++-+.. ..+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4578888999999999999999986642 22333333332211 234566677777766643
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.48 E-value=3.5e+02 Score=23.19 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 007530 308 MISGFS---RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352 (600)
Q Consensus 308 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 352 (600)
+|++|. +..+++.|+-.+-+|.+.| .|..+.=..++.+.-..|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 455554 4688999999999999999 7766666666666655553
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.38 E-value=1.7e+02 Score=23.42 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 184 (600)
.-.|.++++.+.+.++..+..|----++.+.+.|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444443333333333334444444
No 324
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.31 E-value=2.2e+02 Score=20.68 Aligned_cols=37 Identities=8% Similarity=-0.073 Sum_probs=27.8
Q ss_pred hCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHH
Q 007530 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVE 320 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 320 (600)
....+.|.++++.+..++..++..++.++.+.+...-
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 4567778888888888888888888888877775443
No 325
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.86 E-value=4.9e+02 Score=24.67 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCC
Q 007530 72 NILINFYSKCGLISGARKVFDEMPQR 97 (600)
Q Consensus 72 ~~li~~y~~~g~~~~A~~~~~~~~~~ 97 (600)
..+|.=|-..++.++|...++++..|
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p 83 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLG 83 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCc
Confidence 34444444555555555555555433
No 326
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=22.45 E-value=18 Score=18.66 Aligned_cols=13 Identities=46% Similarity=1.234 Sum_probs=8.7
Q ss_pred ccccccc--cCCCCC
Q 007530 588 HFTNGSC--SCWDFW 600 (600)
Q Consensus 588 ~~~~g~c--sc~~~w 600 (600)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 6777777 466655
No 327
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.29 E-value=2e+02 Score=24.74 Aligned_cols=141 Identities=12% Similarity=0.050 Sum_probs=65.2
Q ss_pred HHhccCCchhHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCChh
Q 007530 42 SCARERAPVRGKVCHAKIIGMGLNNDTL--TSNILINFYSKCGLISGARKVFDEMPQR---CIVSWNTIIGSYTTNGREQ 116 (600)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 116 (600)
..+..|+.+ +...+++.|..++.. .....+...++.|+.+-+..+++.-..+ +...++.+ ...+..|+.+
T Consensus 17 ~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~ 91 (237)
T 3b7b_A 17 AAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL-HLAAKKGHYE 91 (237)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH-HHHHHTTCHH
T ss_pred HHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHH
Confidence 334456654 445566666554321 1123344455678888777777654322 32223333 3334556554
Q ss_pred HHHHHHHHHHHcCCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHcCCHHHHHH
Q 007530 117 EAVALFINMLREGKTPY---SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF--VGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 117 ~A~~~~~~m~~~g~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~ 191 (600)
+++.+.+.|...+ +..-.+.+. ..+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+.-
T Consensus 92 ----~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 92 ----VVQYLLSNGQMDVNCQDDGGWTPMI-WATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp ----HHHHHHTTTCCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred ----HHHHHHhCCCCCcccCCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 3334444431221 222222232 333445544 344445556544322 12223444455677666666
Q ss_pred HHccC
Q 007530 192 VFESM 196 (600)
Q Consensus 192 ~f~~m 196 (600)
+++.-
T Consensus 163 Ll~~g 167 (237)
T 3b7b_A 163 LLAAK 167 (237)
T ss_dssp HHTTT
T ss_pred HHHcC
Confidence 66543
No 328
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.10 E-value=2.3e+02 Score=20.53 Aligned_cols=62 Identities=5% Similarity=0.063 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007530 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 220 (600)
..+++.+.+.|+- +..-+..+-. .....++|.++++.++.+...++..++.++.+.+...-|
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 3455556655543 2222222221 356778899999999888888999999888887765443
No 329
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.09 E-value=3.7e+02 Score=25.62 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCCC----HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHH
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPERN----EVTWSSMVAGFVQNEL-YEEALILFRRAQVLGLEYNQF 237 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~d----~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ 237 (600)
..+++.=|...|++++|.+.++++..|+ .+.+..+..++-+... -+.+-.++..+...|+-+...
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4567888888888888888888887764 2333333333333211 244556666666666544333
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.07 E-value=5.9e+02 Score=25.25 Aligned_cols=128 Identities=9% Similarity=0.007 Sum_probs=67.5
Q ss_pred HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 007530 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339 (600)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 339 (600)
.+.|++--...|.--.+.+...|++++|.++--.-+. ++..+.+.+-..=.+.|+..--+.+|..+.+.| +.|..-
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~E 431 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYE 431 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHH
Confidence 3445555555555556677777888877777665543 344454444443344566666677777777665 344433
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (600)
-.-+.+.-...|+.+..++.+ ++..+..+.+.-..+ +..+..-|..+|.+..
T Consensus 432 SlEl~r~vL~q~r~~llekWl----~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 432 SLELCRPVLQQGRKQLLEKWL----KEDKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH----HHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred hhHHhHHHHhccHHHHHHHHH----hcCCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 333444444455554444443 334555554332211 3345555666655553
No 331
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.95 E-value=1.7e+02 Score=29.45 Aligned_cols=63 Identities=17% Similarity=0.056 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--C---cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--N---AGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
...++.+++.|...+.++.|..+..+..-..+. + ...+..++.++.-.++|.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456666667777777777777776666421111 0 22444567777888888888777766543
No 332
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=21.91 E-value=35 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=27.7
Q ss_pred CCCcEEEEec----ccccCCchhHHHHHhhhcCCcEEEecCCccccccccccc
Q 007530 547 PGVPIRIMKN----LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCS 595 (600)
Q Consensus 547 ~~~~~~~~~~----~~~c~~~~~a~~~~~~~~~~~~~~~d~~~~h~~~~g~cs 595 (600)
....+||++- .++|-+| .+...-..-.++..||+|+++.|-
T Consensus 43 ~~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 43 ASSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CCcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 3666787753 5565554 344444455788999999999874
No 333
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.24 E-value=2.2e+02 Score=26.51 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=42.2
Q ss_pred HHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 396 ILNMPFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 396 ~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
|.....+|. ..+..+-+..+.+++|+..|..+.++++++.|... ..++|.++...-...
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 333345553 45777888889999999999999999999987622 235577776666544
No 334
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.87 E-value=2.3e+02 Score=27.50 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHhcCChHHHHHHHccCCCCCc---chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh---hhHHHHHHHHhcC
Q 007530 75 INFYSKCGLISGARKVFDEMPQRCI---VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE---FTVSSVLCACAAK 148 (600)
Q Consensus 75 i~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~---~t~~~ll~~~~~~ 148 (600)
+..-+..|+++-+..+++.-..++. ... +.+...+..|+.+-+. .+.+.| ..++. .-.+ .+...+..
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~----~Ll~~g-~~~~~~~~~g~t-~L~~A~~~ 90 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAK----YLLQNK-AKVNAKAKDDQT-PLHCAARI 90 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHH----HHHHHT-CCSSCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHH----HHHhCC-CCCCCCCCCCCC-HHHHHHHC
Confidence 4444567888877777776444433 223 3344445556654333 333334 33322 1222 23333344
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHHcCCHHHHHHHHcc
Q 007530 149 RDVFECKQLHVFALKAAMDRNVFV--GTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
|+.+- .+.+++.|..++... ..+.+...++.|+.+.+..+++.
T Consensus 91 g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 91 GHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 55443 333444454433211 12233444555666666666554
No 335
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.84 E-value=2.7e+02 Score=22.46 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=32.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 007530 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390 (600)
Q Consensus 327 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 390 (600)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 35556666544322 3344444445566777777777543 33334444444456777777654
No 336
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.74 E-value=1.7e+02 Score=25.20 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=9.9
Q ss_pred HHHHHHcCCHHHHHHHHcc
Q 007530 177 LDVYAKCGLISDASRVFES 195 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~ 195 (600)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455666655555554
No 337
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.53 E-value=1.6e+02 Score=27.78 Aligned_cols=48 Identities=13% Similarity=-0.020 Sum_probs=19.5
Q ss_pred HHHHcCCHHHHHHHHccCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007530 179 VYAKCGLISDASRVFESMPERNE-VTWSSMVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~m 227 (600)
..+..|+.+-+.-+++.-...+. .-++ .+...+..|+.+-+..+++.-
T Consensus 59 ~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 59 LACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCCHHHHHHHHHhc
Confidence 33444555555544444332221 1112 222233455555544444443
No 338
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.47 E-value=4e+02 Score=22.76 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHhcCCCccHHHHHHH
Q 007530 308 MISGFSRH---ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM-----VEKGKSYFDLMVKQHNVLPNVFHYSCM 379 (600)
Q Consensus 308 li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~~~p~~~~~~~l 379 (600)
+|++|.+. .+++.|+-.+-+|++.|-.|..+.=..++.+.-..|. +..|...++.. +..|.+--.....-.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~-~~iG~PE~~i~Laqa 88 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF-TRVGAYEGERAIAQA 88 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-HHHCCcHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHc
Q 007530 380 IDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~ 398 (600)
+-.++.+-+...+...++.
T Consensus 89 viyLA~aPKSNs~y~A~~~ 107 (201)
T 3bge_A 89 IIYLSVAPKSNAVYTAFNT 107 (201)
T ss_dssp HHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHH
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.26 E-value=3.9e+02 Score=23.26 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCCCccH-HHH-----HHHHHHHHhcCCHHHHHHHHHcC
Q 007530 353 VEKGKSYFDLMVKQHNVLPNV-FHY-----SCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~p~~-~~~-----~~li~~~~~~g~~~~A~~~~~~m 399 (600)
++.|..+|+.+.+...+..+. ... -..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 455666666665443322211 111 12233455666666666666654
No 340
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.19 E-value=2.6e+02 Score=23.81 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=8.9
Q ss_pred HHHhcCChHHHHHHHcc
Q 007530 77 FYSKCGLISGARKVFDE 93 (600)
Q Consensus 77 ~y~~~g~~~~A~~~~~~ 93 (600)
..++.|+++....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33445566555555543
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.17 E-value=2e+02 Score=23.04 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 390 (600)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345667777665433 2344444456666788888888543 43445555555567888888754
Done!