BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007532
(599 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/599 (85%), Positives = 551/599 (91%), Gaps = 1/599 (0%)
Query: 1 MAVDSALSSPLGPPACEKDAKALRFIEEMTRNAEAVQEKVLAEILSRNADVEYLKRYKLG 60
MAVD LSSPLGP A EKDAKAL+FIEEMTRNA++VQE+VLAEILSRN + EYLKR+KL
Sbjct: 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLE 60
Query: 61 GATDRETFKSKLPIIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT 120
G+T RETFKSK+P+IKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT
Sbjct: 61 GSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT 120
Query: 121 IQEELDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKSETRTPGGLLARPVLTSYYKSE 180
IQEELDRRQ+LYSLLMPVMNLYVPGLDKGK LYFLFVKSETRTPGGLLARPVLTSYYKSE
Sbjct: 121 IQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSE 180
Query: 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRF 240
HFKTRPYDPYNVYTSPNEAILCADSFQSMY QMLCG+ ER+QVLRLGAVFASGLLRAIRF
Sbjct: 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240
Query: 241 LQLHWQALASDIESGTLNQKITDPSIKDCLGKTLKPNTELAEFIRMECSKENWERIITRI 300
LQL+W L DI +GTL+ KITDPS+++C+ LKP+ ELA+ + ECSK+NWE IITRI
Sbjct: 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRI 300
Query: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYT 360
WPNTKYLDVIVTGAMAQYIPTLDYYSGG LP+ACTMYASSECYFGLNLNP+ +PSEVSYT
Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSGG-LPLACTMYASSECYFGLNLNPMSKPSEVSYT 359
Query: 361 IMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITTYAGLYRYRVGDILR 420
IMPNMAYFEFLP E S S P+ VDL VE+GKEYELVITTYAGLYRYRVGDILR
Sbjct: 360 IMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILR 419
Query: 421 VIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANT 480
V GFHNSAPQFHFVRRKNVLLSI+SDKTDEAELQ A+DNAS+LLRE NTSV EYTS+A+T
Sbjct: 420 VTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT 479
Query: 481 KTIPGHYVIYWELLIKDSANSPTNEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVV 540
KTIPGHYVIYWELL+KDSANSP++E+L QCCLAMEE LNSVYRQGRVADNSIGPLEIRVV
Sbjct: 480 KTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVV 539
Query: 541 RNGTFEELMDYAISRGASINQYKVPRCVNFTPIVELLDSRTVSAHFSPALPHWTPERRR 599
++GTFEELMDYAISRGASINQYKVPRCVNFTPI+ELLDSR VS+HFSPALPHWTP RRR
Sbjct: 540 KSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 546 bits (1408), Expect = e-156, Method: Compositional matrix adjust.
Identities = 264/569 (46%), Positives = 386/569 (67%), Gaps = 16/569 (2%)
Query: 26 IEEMTRNAEAVQEKVLAEILSRNADVEYLKRYKLGGATDRETFKSKLPIIKYEDLQPEIQ 85
++++T N +++Q+ +L EI++ N EYL+R+ L D+E FK +PI+ YED++P +
Sbjct: 21 LKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLD 79
Query: 86 RIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPG 145
R+ NG+ S ++SA I+ FL SSGTS G +K+MP + LD +Y L M V+ +V G
Sbjct: 80 RVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKG 139
Query: 146 LDKGKALYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADS 205
+++GK + FLF K E+ TP GL AR +SY+KS++FK RP + Y YTSP+E ILC ++
Sbjct: 140 VEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 206 FQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIESGTLNQKITDPS 265
+S+Y +LCGL++R++V+R G++FAS ++RAI L+ W+ L S+I SG L+ +TD
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 266 IKDCLGKTL-KPNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAMAQYIPTLDY 324
++ + L P ELA+ I C++ +W+ I+ R+WPNTKY++ +VTG+M QY+P L+Y
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNY 319
Query: 325 YSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSS 384
Y LP+ T Y SSE FG+NL+P+C+P +VSYT MPNM+YFEF+P + D +
Sbjct: 320 YC-NDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDV--- 375
Query: 385 DPQPVDLVDVEMGKEYELVITTYAGLYRYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIE 444
VDL DV++G YE V+T +AGLYR RVGDI+ V GF+N+APQF FVRR+NV+LSI+
Sbjct: 376 ----VDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431
Query: 445 SDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELLIKDSANSPT- 503
SDKT+E +L A+ A +L + ++TSYA+T T PGHYV+Y E+ K+ T
Sbjct: 432 SDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETA 491
Query: 504 -----NEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVRNGTFEELMDYAISRGAS 558
E L+ CCL MEE L++VY++ R D SIGPLEIRVVR GTF+ LMD+ IS+GAS
Sbjct: 492 QFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGAS 551
Query: 559 INQYKVPRCVNFTPIVELLDSRTVSAHFS 587
QYK PRC+ +++L++ V+ FS
Sbjct: 552 TGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 524 bits (1350), Expect = e-149, Method: Compositional matrix adjust.
Identities = 257/569 (45%), Positives = 376/569 (66%), Gaps = 16/569 (2%)
Query: 26 IEEMTRNAEAVQEKVLAEILSRNADVEYLKRYKLGGATDRETFKSKLPIIKYEDLQPEIQ 85
++++T N +++Q+ +L EI++ N EYL+R+ L D+E FK +PI+ YED++P +
Sbjct: 21 LKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLD 79
Query: 86 RIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPG 145
R+ NG+ S ++SA I+ FL SSGTS G +K P + LD +Y L V+ +V G
Sbjct: 80 RVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDLRXQVITKHVKG 139
Query: 146 LDKGKALYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADS 205
+++GK FLF K E+ TP GL AR +SY+KS++FK RP + Y YTSP+E ILC ++
Sbjct: 140 VEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 206 FQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIESGTLNQKITDPS 265
+S+Y +LCGL++R++V+R G++FAS +RAI L+ W+ L S+I SG L+ +TD
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 266 IKDCLGKTL-KPNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAMAQYIPTLDY 324
++ + L P ELA+ I C++ +W+ I+ R+WPNTKY++ +VTG+ QY+P L+Y
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSXGQYVPXLNY 319
Query: 325 YSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSS 384
Y LP+ T Y SSE FG+NL+P+C+P +VSYT PN +YFEF+P + D +
Sbjct: 320 YC-NDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDGGDKNDV--- 375
Query: 385 DPQPVDLVDVEMGKEYELVITTYAGLYRYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIE 444
VDL DV++G YE V+T +AGLYR RVGDI+ V GF+N+APQF FVRR+NV+LSI+
Sbjct: 376 ----VDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431
Query: 445 SDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELLIKDSANSPT- 503
SDKT+E +L A+ A +L + ++TSYA+T T PGHYV+Y E+ K+ T
Sbjct: 432 SDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETA 491
Query: 504 -----NEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVRNGTFEELMDYAISRGAS 558
E L+ CCL EE L++VY++ R D SIGPLEIRVVR GTF+ L D+ IS+GAS
Sbjct: 492 QFELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLXDFFISQGAS 551
Query: 559 INQYKVPRCVNFTPIVELLDSRTVSAHFS 587
QYK PRC+ +++L++ V+ FS
Sbjct: 552 TGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/572 (38%), Positives = 340/572 (59%), Gaps = 20/572 (3%)
Query: 26 IEEMTRNAEAVQEKVLAEILSRNADVEYLKRYKLGG-ATD-RETFKSKLPIIKYEDLQPE 83
+EMTRNA VQ++ L EIL +N YL+ L G ATD E FKS +P++ +L+P
Sbjct: 23 FDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPY 82
Query: 84 IQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYV 143
I+R+ +GD S IL+ HP+ SSGTS G K +P E ++ L+ N
Sbjct: 83 IKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDF 142
Query: 144 PGLDKGKALYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCA 203
P D GKAL F+F + + GG+ T+ Y++ +FK + SP+E I
Sbjct: 143 PIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSP 202
Query: 204 DSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIESGTLNQKITD 263
D Q++Y +L G+L R+QV + AVFA GL+ A R + W+ + +DI+ G L+ +IT
Sbjct: 203 DVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITV 262
Query: 264 PSIKDCLGKTLKPNTELAEFIRMEC-SKENWERIITRIWPNTKYLDVIVTGAMAQYIPTL 322
PS++ + K L PN ELAE IR +C S NW +I ++PN KY+ I+TG+M Y+P L
Sbjct: 263 PSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKL 322
Query: 323 DYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLT 382
+Y+ G LP+ Y SSE + N+ P P E ++ ++PN+ YFEFLP +
Sbjct: 323 RHYA-GDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETG----- 376
Query: 383 SSDPQPVDLVDVEMGKEYELVITTYAGLYRYRVGDILRVIGFHNSAPQFHFVRRKNVLLS 442
+ +PV L V++G+EYE+VIT YAGLYRYR+GD+++VIGF+N+ PQ F+ R+N++LS
Sbjct: 377 EGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILS 436
Query: 443 IESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELLIKDSANSP 502
I DK E +LQ ++++A++ L E V +++SY + T PGHY I+WE+ +
Sbjct: 437 INIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEI------SGE 490
Query: 503 TNE-VLNQCCLAMEEC-LNSVYRQGRVADNSIGPLEIRVVRNGTFEELMDYAISRGASIN 560
TNE VL CC ++ +++ Y R +IG LE+RVV GTF ++ ++ + G+S
Sbjct: 491 TNEDVLQDCCNCLDRAFIDAGYVSSRKC-KTIGALELRVVAKGTFRKIQEHFLGLGSSAG 549
Query: 561 QYKVPRCV--NFTPIVELLDSRTVSAHFSPAL 590
Q+K+PRCV + ++++L VS++FS A
Sbjct: 550 QFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581
>pdb|2V31|A Chain A, Structure Of First Catalytic Cysteine Half-Domain Of Mouse
Ubiquitin-Activating Enzyme
Length = 112
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 524 QGRVADNSIGPLEIRVVRNGTFE-----ELMDYAISRGASINQYKVPRCVNFTPI 573
QG + N P+EI+V+ TF DY RG ++Q KVP+ ++F +
Sbjct: 54 QGMIQLNGCQPMEIKVLGPYTFSICDTSNFSDYI--RGGIVSQVKVPKKISFKSL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,643,340
Number of Sequences: 62578
Number of extensions: 736551
Number of successful extensions: 1467
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 6
length of query: 599
length of database: 14,973,337
effective HSP length: 104
effective length of query: 495
effective length of database: 8,465,225
effective search space: 4190286375
effective search space used: 4190286375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)