Query 007532
Match_columns 599
No_of_seqs 181 out of 901
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b2g_A GH3-1 auxin conjugating 100.0 4E-137 1E-141 1146.3 49.8 598 1-599 1-598 (609)
2 4epl_A Jasmonic acid-amido syn 100.0 6E-132 2E-136 1100.5 51.7 571 7-590 3-581 (581)
3 4eql_A 4-substituted benzoates 100.0 2E-132 7E-137 1106.8 42.9 565 14-587 9-580 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 3.6E-23 1.2E-27 223.9 24.5 389 25-547 10-421 (436)
5 2y4o_A Phenylacetate-coenzyme 99.9 4.8E-22 1.7E-26 215.5 27.7 386 31-547 23-427 (443)
6 2y27_A Phenylacetate-coenzyme 99.9 2.8E-22 9.6E-27 217.0 25.3 383 31-546 21-422 (437)
7 3hgu_A EHPF; phenazine, antibi 99.6 1.1E-15 3.8E-20 161.4 14.4 307 35-445 21-367 (369)
8 2d1s_A Luciferase, luciferin 4 99.5 1.8E-12 6.3E-17 144.3 26.1 151 277-459 290-462 (548)
9 3etc_A AMP-binding protein; ad 99.5 1.6E-12 5.4E-17 146.0 25.5 128 307-459 343-496 (580)
10 4fuq_A Malonyl COA synthetase; 99.5 2.5E-12 8.5E-17 141.6 25.1 129 307-459 270-420 (503)
11 3e7w_A D-alanine--poly(phospho 99.5 6.3E-12 2.2E-16 138.5 26.1 149 277-459 241-419 (511)
12 3ni2_A 4-coumarate:COA ligase; 99.5 2.4E-12 8.1E-17 142.8 22.3 151 277-459 278-455 (536)
13 1t5h_X 4-chlorobenzoyl COA lig 99.5 5.3E-12 1.8E-16 138.8 24.0 152 277-459 251-423 (504)
14 3fce_A D-alanine--poly(phospho 99.5 2.6E-12 8.9E-17 141.5 21.4 149 277-459 242-420 (512)
15 3rix_A Luciferase, luciferin 4 99.5 5.5E-13 1.9E-17 148.4 15.7 153 277-460 288-461 (550)
16 1mdb_A 2,3-dihydroxybenzoate-A 99.4 7.8E-12 2.7E-16 138.8 22.6 149 277-459 279-451 (539)
17 3ivr_A Putative long-chain-fat 99.4 4.4E-13 1.5E-17 147.5 11.7 130 307-460 274-422 (509)
18 2v7b_A Benzoate-coenzyme A lig 99.4 1.2E-11 4.1E-16 136.7 23.3 128 307-459 302-450 (529)
19 1pg4_A Acetyl-COA synthetase; 99.4 2.9E-11 1E-15 137.5 27.0 253 277-581 357-645 (652)
20 3c5e_A Acyl-coenzyme A synthet 99.4 2.4E-11 8.1E-16 136.0 25.5 128 307-459 324-477 (570)
21 3g7s_A Long-chain-fatty-acid-- 99.4 9.9E-12 3.4E-16 138.2 22.1 154 277-459 275-460 (549)
22 3l8c_A D-alanine--poly(phospho 99.4 1.2E-12 4.1E-17 144.4 14.4 129 307-459 266-424 (521)
23 3kxw_A Saframycin MX1 syntheta 99.4 4E-12 1.4E-16 142.2 18.4 62 393-459 393-479 (590)
24 3nyq_A Malonyl-COA ligase; A/B 99.4 1.5E-11 5.3E-16 135.4 22.3 155 277-459 250-427 (505)
25 3ite_A SIDN siderophore synthe 99.4 3E-12 1E-16 142.6 16.3 130 307-460 296-449 (562)
26 3gqw_A Fatty acid AMP ligase; 99.4 1.8E-11 6.2E-16 136.2 22.6 62 393-459 405-482 (576)
27 3o83_A Peptide arylation enzym 99.4 1.1E-12 3.7E-17 145.9 12.5 151 277-460 288-461 (544)
28 3rg2_A Enterobactin synthase c 99.4 4.6E-12 1.6E-16 143.1 16.4 152 277-459 281-455 (617)
29 3r44_A Fatty acyl COA syntheta 99.4 1.7E-11 5.7E-16 135.5 19.8 147 277-459 265-434 (517)
30 4gr5_A Non-ribosomal peptide s 99.3 4.7E-12 1.6E-16 141.6 14.3 148 277-460 310-491 (570)
31 1ry2_A Acetyl-coenzyme A synth 99.3 6E-11 2E-15 135.3 22.9 229 305-579 384-659 (663)
32 3tsy_A Fusion protein 4-coumar 99.3 2.4E-11 8.4E-16 144.3 19.0 152 277-460 325-503 (979)
33 1amu_A GRSA, gramicidin synthe 99.3 1.8E-10 6.1E-15 128.8 23.3 129 307-459 295-451 (563)
34 3ipl_A 2-succinylbenzoate--COA 99.3 2.4E-10 8.2E-15 125.3 23.6 140 277-459 258-419 (501)
35 4dg8_A PA1221; ANL superfamily 99.3 3.7E-11 1.2E-15 136.0 16.6 148 277-459 260-440 (620)
36 4gs5_A Acyl-COA synthetase (AM 99.2 3.1E-11 1.1E-15 127.4 12.0 118 307-461 150-273 (358)
37 1v25_A Long-chain-fatty-acid-C 99.2 1.1E-10 3.7E-15 129.7 14.4 149 277-460 274-457 (541)
38 2vsq_A Surfactin synthetase su 99.1 5.6E-10 1.9E-14 136.5 17.5 129 307-459 722-882 (1304)
39 3t5a_A Long-chain-fatty-acid-- 98.3 5.2E-06 1.8E-10 89.8 13.6 28 99-127 183-210 (480)
40 3lax_A Phenylacetate-coenzyme 97.3 0.00066 2.3E-08 58.5 8.0 93 436-547 2-94 (109)
41 3gxs_A Phenylacetate-coenzyme 97.0 0.0022 7.5E-08 55.3 8.5 94 435-547 1-94 (109)
42 2cc6_A VNG1446H, dodecin; flav 28.5 1.3E+02 0.0046 23.3 6.0 48 447-495 14-62 (68)
43 3onr_A Protein transport prote 27.8 1.6E+02 0.0053 23.2 6.3 48 447-495 16-64 (72)
44 4he6_A Peptidase family U32; u 25.4 66 0.0022 25.9 4.0 33 412-448 29-61 (89)
45 1lbj_A Motilin; A-helix, B-tur 23.0 38 0.0013 20.9 1.5 17 72-88 2-18 (26)
No 1
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=3.5e-137 Score=1146.33 Aligned_cols=598 Identities=85% Similarity=1.328 Sum_probs=533.1
Q ss_pred CccccccCCCCCCCcccchHHHHHHHHHHhHcHHHHHHHHHHHHHHhcCCChHHHhcCCCCCCCHHHHhhcCCCCCccch
Q 007532 1 MAVDSALSSPLGPPACEKDAKALRFIEEMTRNAEAVQEKVLAEILSRNADVEYLKRYKLGGATDRETFKSKLPIIKYEDL 80 (599)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edF~~~vPl~~Yed~ 80 (599)
|+++..++|++.-+..+++++.++.||++++|+.++|+++|++||++|++|+|||+|||++|++++||+++|||++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl 80 (609)
T 4b2g_A 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDL 80 (609)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHH
T ss_pred CCccccccCchhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCcccccccccceeecccccCCCCccccccChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccC
Q 007532 81 QPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKSE 160 (599)
Q Consensus 81 ~p~ier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~ 160 (599)
+||||||++||.++|||++||.+|+.|||||+|++|+||+|+++++.+..++.+|+.++++.+|.++.||.|++++++.+
T Consensus 81 ~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~ 160 (609)
T 4b2g_A 81 QPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSE 160 (609)
T ss_dssp HHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCC
T ss_pred HHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCc
Confidence 99999999999878999999999999999999999999999999999888899999999998998888999999878888
Q ss_pred ccCCCCceeecccccccccccccCCCCCCCCccCCchhhhhccChhhhHHHHHHhhhccccceeEEeeccHHHHHHHHHH
Q 007532 161 TRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRF 240 (599)
Q Consensus 161 ~~t~~Gip~g~~s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~i~~~~~~~ll~~~~~ 240 (599)
..|++|+|+|++|+.++++.+|+++|.+|...|++|.+++.++|..+++||||||||.++++|+.|+++|+++++++++.
T Consensus 161 ~~t~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~ 240 (609)
T 4b2g_A 161 TRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240 (609)
T ss_dssp EECTTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHH
T ss_pred ccCCCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCchhhhhhcccCCCCHHHHHHHHHHhccccccccccccCCCCceeEEEEecchhhhHH
Q 007532 241 LQLHWQALASDIESGTLNQKITDPSIKDCLGKTLKPNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAMAQYIP 320 (599)
Q Consensus 241 le~~w~~l~~dI~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~ 320 (599)
|+++|++||+||++|+++++++++++|+++++.++|+|++|++|+++|.+.+|.|++++|||||++|.||++|||++|++
T Consensus 241 L~~~Weel~~dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~ 320 (609)
T 4b2g_A 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIP 320 (609)
T ss_dssp HHHHHHHHHHHHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHH
T ss_pred HHHHHHHHHHHHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHH
Confidence 99999999999999999999999999999999999999999999999998779999999999999999999999999999
Q ss_pred HHHHHhCCCCCccccccccccccccccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeE
Q 007532 321 TLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEY 400 (599)
Q Consensus 321 ~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~Y 400 (599)
+|++++|+ +|+++.+|+||||+||+|++|.|+++..+|+|+|+.+||||||+++.+...+++..+++|+++|||+|++|
T Consensus 321 ~l~~~~g~-~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~Y 399 (609)
T 4b2g_A 321 TLDYYSGG-LPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEY 399 (609)
T ss_dssp HHHHHHTS-CCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEE
T ss_pred HHHHHcCC-CccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeE
Confidence 99999988 99999999999999999999999988889999999999999998764100001234569999999999999
Q ss_pred EEEEeeccceeccccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecC
Q 007532 401 ELVITTYAGLYRYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANT 480 (599)
Q Consensus 401 elviTt~~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~ 480 (599)
||||||++||||||+||+|+|+||++++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|++|.|||+++|.
T Consensus 400 elViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~ 479 (609)
T 4b2g_A 400 ELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT 479 (609)
T ss_dssp EEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC
T ss_pred EEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999998777899999999999988
Q ss_pred CCCCceEEEEEEEeecCCCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCccHHHHHHHHHhcCCCCC
Q 007532 481 KTIPGHYVIYWELLIKDSANSPTNEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVRNGTFEELMDYAISRGASIN 560 (599)
Q Consensus 481 ~~~p~hY~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~LN~~Y~~~R~~~g~l~p~~v~iv~~gtF~~~~~~~~~~G~~~~ 560 (599)
++.||||+||||+++.+....++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+++|
T Consensus 480 ~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~g 559 (609)
T 4b2g_A 480 KTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASIN 559 (609)
T ss_dssp SSSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC-------------
T ss_pred CCCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCC
Confidence 88899999999997421112456789999999999999999999997777999999999999999999999999999999
Q ss_pred CCCCCcccCCHhHHHHHhccccceeccCCCCCCCCCCCC
Q 007532 561 QYKVPRCVNFTPIVELLDSRTVSAHFSPALPHWTPERRR 599 (599)
Q Consensus 561 Q~K~Pr~~~~~~~~~~L~~~~~~~~~s~~~~~~~~~~~~ 599 (599)
|||+|||+|+++++|+|+++|+++|+|+++|+|+|++++
T Consensus 560 Q~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~ 598 (609)
T 4b2g_A 560 QYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598 (609)
T ss_dssp ---CCSSCC--CCHHHHHTTEEEEEECCSCCCCCSCCC-
T ss_pred CcCCCcccCCHHHHHHHHhcccccccCCCCCCCCcccch
Confidence 999999999999999999999999999999999998764
No 2
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=6.1e-132 Score=1100.48 Aligned_cols=571 Identities=38% Similarity=0.686 Sum_probs=521.4
Q ss_pred cCCCCCC-CcccchHHHHHHHHHHhHcHHHHHHHHHHHHHHhcCCChHHHhcCCCCC-CCHH-HHhhcCCCCCccchhHH
Q 007532 7 LSSPLGP-PACEKDAKALRFIEEMTRNAEAVQEKVLAEILSRNADVEYLKRYKLGGA-TDRE-TFKSKLPIIKYEDLQPE 83 (599)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i-~s~e-dF~~~vPl~~Yed~~p~ 83 (599)
||..+.+ ...+++++.++.||++++|+.++|+++|++||+.|++|+|||+|||++| ++++ ||+++|||++|||++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~py 82 (581)
T 4epl_A 3 HMARMLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPY 82 (581)
T ss_dssp ----------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHH
T ss_pred hHhhhhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHH
Confidence 4444444 4556788889999999999999999999999999999999999999999 9999 99999999999999999
Q ss_pred HHHHHcCCCcccccccccceeecccccCCCCccccccChHHHHHHHHHHHHHHHHHhhcCCCCC-CCceEEEEecccCcc
Q 007532 84 IQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPGLD-KGKALYFLFVKSETR 162 (599)
Q Consensus 84 ier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~-~gk~l~~~~~~~~~~ 162 (599)
||||++||.++|||++||.+|++|||||+|++|+||+|+++++.+..++.++..++++ +|.++ .||.|++.+++.+..
T Consensus 83 IeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~ 161 (581)
T 4epl_A 83 IKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYI 161 (581)
T ss_dssp HHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEE
T ss_pred HHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCccc
Confidence 9999999977999999999999999999999999999999999987778888887776 68888 899999888888999
Q ss_pred CCCCceeecccccccccccccCCCCCCCCccCCchhhhhccChhhhHHHHHHhhhccccceeEEeeccHHHHHHHHHHHH
Q 007532 163 TPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQ 242 (599)
Q Consensus 163 t~~Gip~g~~s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~i~~~~~~~ll~~~~~le 242 (599)
|++|+|+|++|+.+++|.+|+++|..+...+++|.+++.++|..+++||||||||.++++|..|+++|+++|+++++.|+
T Consensus 162 t~~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~ 241 (581)
T 4epl_A 162 STGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFE 241 (581)
T ss_dssp CTTSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHH
T ss_pred CCCCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHH
Confidence 99999999999999999999998877778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCchhhhhhcccCCCCHHHHHHHHHHhccc-cccccccccCCCCceeEEEEecchhhhHHH
Q 007532 243 LHWQALASDIESGTLNQKITDPSIKDCLGKTLKPNTELAEFIRMECSKE-NWERIITRIWPNTKYLDVIVTGAMAQYIPT 321 (599)
Q Consensus 243 ~~w~~l~~dI~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~-~~~g~~~~lWP~l~~l~~~~~g~~~~y~~~ 321 (599)
++|+++|+||++|+++++++++++|.++++.++|+|++|++|+++|.+. +|.|++++|||||++|.||++|+|++|+++
T Consensus 242 ~~We~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~ 321 (581)
T 4epl_A 242 QVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPK 321 (581)
T ss_dssp HHHHHHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHH
T ss_pred HHHHHHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 699999999999999999999999999999
Q ss_pred HHHHhCCCCCccccccccccccccccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEE
Q 007532 322 LDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYE 401 (599)
Q Consensus 322 l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~Ye 401 (599)
|++++|+ +|+++.+|+||||+||+|++|.|+++..+|+|+|+.+||||||+++.+. ..+++|+++||++|++||
T Consensus 322 l~~~~g~-~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~-----~~~~~v~l~eve~G~~Ye 395 (581)
T 4epl_A 322 LRHYAGD-LPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE-----GEEKPVGLTQVKIGEEYE 395 (581)
T ss_dssp HHHHHTT-SCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC------------CCCEEGGGCCTTCEEE
T ss_pred HHHHcCC-CccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC-----CCCceeeHHHcCCCCeEE
Confidence 9999988 9999999999999999999999998889999999999999999886532 244699999999999999
Q ss_pred EEEeeccceeccccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCC
Q 007532 402 LVITTYAGLYRYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTK 481 (599)
Q Consensus 402 lviTt~~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~ 481 (599)
|||||++||||||+||+|+|+||++++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|+.|.|||+++|.+
T Consensus 396 lviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~ 475 (581)
T 4epl_A 396 VVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS 475 (581)
T ss_dssp EEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS
T ss_pred EEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988878999999999999888
Q ss_pred CCCceEEEEEEEeecCCCCCCChHHHHHHHHHHHHHh-ChhhHhccccCCccCCeEEEEeCCccHHHHHHHHHhcCCCCC
Q 007532 482 TIPGHYVIYWELLIKDSANSPTNEVLNQCCLAMEECL-NSVYRQGRVADNSIGPLEIRVVRNGTFEELMDYAISRGASIN 560 (599)
Q Consensus 482 ~~p~hY~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~L-N~~Y~~~R~~~g~l~p~~v~iv~~gtF~~~~~~~~~~G~~~~ 560 (599)
+.||||+||||++ + .++.+.+++||..||++| |++|+.+| +.|+|+||+|++|++|+|++|+++++++|++++
T Consensus 476 ~~p~hyv~~wE~~--~---~~~~~~l~~~~~~Ld~~L~n~~Y~~~R-~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~ 549 (581)
T 4epl_A 476 TDPGHYAIFWEIS--G---ETNEDVLQDCCNCLDRAFIDAGYVSSR-KCKTIGALELRVVAKGTFRKIQEHFLGLGSSAG 549 (581)
T ss_dssp SSSCEEEEEEEES--S---CCCHHHHHHHHHHHHHHCCCHHHHHHH-HHTSSCCCEEEEECTTHHHHHHHHHHTTC----
T ss_pred CCCCcEEEEEeec--C---CCCHHHHHHHHHHHHHHhCChhHHHHH-hcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCC
Confidence 8899999999985 3 356678999999999999 99999999 567999999999999999999999999999999
Q ss_pred CCCCCccc--CCHhHHHHHhccccceeccCCC
Q 007532 561 QYKVPRCV--NFTPIVELLDSRTVSAHFSPAL 590 (599)
Q Consensus 561 Q~K~Pr~~--~~~~~~~~L~~~~~~~~~s~~~ 590 (599)
|||+|||+ |+++++++|+++|+++|+|+++
T Consensus 550 Q~K~PR~~~~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 550 QFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp --CCCSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred CcCCCeeecCCCHHHHHHHHhcccccccCCCC
Confidence 99999999 9999999999999999999975
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=2.2e-132 Score=1106.81 Aligned_cols=565 Identities=47% Similarity=0.856 Sum_probs=473.6
Q ss_pred CcccchHHHHHHHHHHhHcHHHHHHHHHHHHHHhcCCChHHHhcCCCCCCCHHHHhhcCCCCCccchhHHHHHHHcCCCc
Q 007532 14 PACEKDAKALRFIEEMTRNAEAVQEKVLAEILSRNADVEYLKRYKLGGATDRETFKSKLPIIKYEDLQPEIQRIANGDRS 93 (599)
Q Consensus 14 ~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~ 93 (599)
+..+++++.++.||++++|+.++|+++|++||++|++|+|||+| |++|++++||+++|||++|||++||||||++||.+
T Consensus 9 ~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~~Ge~~ 87 (581)
T 4eql_A 9 PIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDRVVNGESS 87 (581)
T ss_dssp -----CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHHHHTTCCG
T ss_pred cccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHHHHcCCCC
Confidence 45567788889999999999999999999999999999999999 99999999999999999999999999999999987
Q ss_pred ccccccccceeecccccCCCCccccccChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccCccCCCCceeeccc
Q 007532 94 AILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKSETRTPGGLLARPVL 173 (599)
Q Consensus 94 ~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s 173 (599)
+|||++||.+|++|||||||++|+||+|+++++.+..++.+|+.++++.+|.++.||.|++++...+..|++|+|+|++|
T Consensus 88 ~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~g~~s 167 (581)
T 4eql_A 88 DVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVAT 167 (581)
T ss_dssp GGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEEECHH
T ss_pred cccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeeecccc
Confidence 99999999999999999999999999999999998888999999999989988889999998877788899999999999
Q ss_pred ccccccccccCCCCCCCCccCCchhhhhccChhhhHHHHHHhhhccccceeEEeeccHHHHHHHHHHHHHHHHHHHHHHH
Q 007532 174 TSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIE 253 (599)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~i~~~~~~~ll~~~~~le~~w~~l~~dI~ 253 (599)
+.++++.+|+++|.+|...|++|.+++.++|..+++||||||||.++++|+.|+++|+++++++++.|+++|+++|+||+
T Consensus 168 ~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~dI~ 247 (581)
T 4eql_A 168 SSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIR 247 (581)
T ss_dssp HHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCchhhhhhcccCC-CCHHHHHHHHHHhccccccccccccCCCCceeEEEEecchhhhHHHHHHHhCCCCCc
Q 007532 254 SGTLNQKITDPSIKDCLGKTLK-PNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPM 332 (599)
Q Consensus 254 ~gt~~~~i~~~~~r~~l~~~l~-~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~~l~~~~g~~~~~ 332 (599)
+|+++++++++++|++|.+.|+ |||++|++|+++|.+.+|.|++++|||||++|+||++|||++|+++|++++|+ +|+
T Consensus 248 ~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~-~p~ 326 (581)
T 4eql_A 248 SGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCND-LPL 326 (581)
T ss_dssp HTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTT-CCE
T ss_pred hCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCC-Ccc
Confidence 9999999999999999999998 99999999999999877899999999999999999999999999999999988 999
Q ss_pred cccccccccccccccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEeeccceec
Q 007532 333 ACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITTYAGLYR 412 (599)
Q Consensus 333 ~~~~Y~asEg~i~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt~~GLyR 412 (599)
++++|+||||+||+|+++.|+++..+|+|+|+.+||||||.++.+ .+++++++|||+|++|||||||++||||
T Consensus 327 ~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~-------~~~~v~l~eVe~G~~YelViTt~~GL~R 399 (581)
T 4eql_A 327 VSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD-------KNDVVDLEDVKLGCTYEPVVTNFAGLYR 399 (581)
T ss_dssp ECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTC-------CSSCEEGGGCCTTCEEEEEEECSSSCCS
T ss_pred ccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccC-------CCcEeCHHHcCCCceEEEEEeeccceee
Confidence 999999999999999999999877899999999999999987642 3469999999999999999999999999
Q ss_pred cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCCCCCceEEEEEE
Q 007532 413 YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWE 492 (599)
Q Consensus 413 Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~hY~l~~E 492 (599)
||+||+|+|+||++++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|++|.|||+++|.++.||||+||||
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~we 479 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLE 479 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSSSBEEEEECC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999987777789999999999988888999999999
Q ss_pred EeecC------CCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCccHHHHHHHHHhcCCCCCCCCCCc
Q 007532 493 LLIKD------SANSPTNEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVRNGTFEELMDYAISRGASINQYKVPR 566 (599)
Q Consensus 493 ~e~~~------~~~~~~~~~l~~~~~~ld~~LN~~Y~~~R~~~g~l~p~~v~iv~~gtF~~~~~~~~~~G~~~~Q~K~Pr 566 (599)
+++.+ ...+++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+++||||+||
T Consensus 480 l~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR 559 (581)
T 4eql_A 480 VDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPR 559 (581)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC---------------------------
T ss_pred EecccccccccccCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCc
Confidence 97511 012355689999999999999999999997778999999999999999999999999999999999999
Q ss_pred ccCCHhHHHHHhccccceecc
Q 007532 567 CVNFTPIVELLDSRTVSAHFS 587 (599)
Q Consensus 567 ~~~~~~~~~~L~~~~~~~~~s 587 (599)
|+|+++++|+|+++|+++|+|
T Consensus 560 ~~~~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 560 CIKSGKALQVLETCVVAKFFS 580 (581)
T ss_dssp -----------------CEEC
T ss_pred ccCCHHHHHHHHhcchheeec
Confidence 999999999999999999998
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.91 E-value=3.6e-23 Score=223.93 Aligned_cols=389 Identities=16% Similarity=0.167 Sum_probs=232.1
Q ss_pred HHHHHh-HcHHHHHHHHHHHHHHhcCCChHHHhc----CCC--CCCCHHHHhhcCCCCCccchhHHHHHHHcCCCccccc
Q 007532 25 FIEEMT-RNAEAVQEKVLAEILSRNADVEYLKRY----KLG--GATDRETFKSKLPIIKYEDLQPEIQRIANGDRSAILS 97 (599)
Q Consensus 25 ~~e~~~-~~~~~~Q~~~L~~iL~~~~~T~ygr~~----gf~--~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~~ll~ 97 (599)
.+|.++ ++.++.|.+.|+++++...+++|||++ |+. +|.+.+|+. ++|++++++++.... .+.. . ..
T Consensus 10 ~~e~~~~~~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~~-~-~~ 83 (436)
T 3qov_A 10 EIEIMSREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP---FGLV-A-GD 83 (436)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT---TTTC-C-SC
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Cccc-c-CC
Confidence 456655 678999999999999977999999964 654 788999995 899999999975321 1110 1 12
Q ss_pred c-cccceeecccccCCCCccccccChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccCccCCCCceeecccccc
Q 007532 98 A-HPISEFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKSETRTPGGLLARPVLTSY 176 (599)
Q Consensus 98 ~-~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~ 176 (599)
. +.+.++..||||| |+||.++.|+..+........ ..+.. -++..+..+... .+... ..|..
T Consensus 84 ~~~~~a~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~---~~~~~--~~~~~~d~~~~~--~~~~~-----~~~~~---- 146 (436)
T 3qov_A 84 MKRDGVRIHSSSGTT-GNPTVIVHSQHDLDSWANLVA---RCLYM--VGIRKTDVFQNS--SGYGM-----FTGGL---- 146 (436)
T ss_dssp HHHHEEEEEECSCSS-SCCCEEEEEHHHHHHHHHHHH---HHHHH--TTCCTTSEEEEC--SCCTT-----CHHHH----
T ss_pred CcCCeEEEEECCCcC-CCCeEEEECHHHHHHHHHHHH---HHHHH--cCCCCCCEEEEC--ccccc-----chhHH----
Confidence 2 4455788999999 899999999997654322111 11111 122233332211 11000 00000
Q ss_pred cccccccCCCCCCCCccCCchhhhhccChhhhHHHHHHhhhccccceeEEeeccHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007532 177 YKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIESGT 256 (599)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~i~~~~~~~ll~~~~~le~~w~~l~~dI~~gt 256 (599)
...+..+..|.. +.... .+ +-+.+++.|++.
T Consensus 147 ------------------------------~~~~~~l~~G~~----~~~~~-~~-------------~~~~~~~~i~~~- 177 (436)
T 3qov_A 147 ------------------------------GFQYGAERLGCL----TVPAA-AG-------------NSKRQIKFISDF- 177 (436)
T ss_dssp ------------------------------HHHHHHHHHTCE----EECCC-SC-------------CHHHHHHHHHHH-
T ss_pred ------------------------------HHHHHHHHcCCE----EEeCC-CC-------------CHHHHHHHHHHH-
Confidence 001111211110 00000 11 113344444543
Q ss_pred CCCCCCCchhhhhhcccCCCCHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCcc
Q 007532 257 LNQKITDPSIKDCLGKTLKPNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMA 333 (599)
Q Consensus 257 ~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~ 333 (599)
+++.. ...|..+..|.+...+.+. ..-.++ ++.+++||. ...++.+++.+| ++++
T Consensus 178 ---~~t~~----------~~~P~~~~~l~~~~~~~~~----~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~g--~~v~ 235 (436)
T 3qov_A 178 ---KTTAL----------HAIPSYAIRLAEVFQEEGI----DPRETT---LKTLVIGAEPHTDEQRRKIERMLN--VKAY 235 (436)
T ss_dssp ---TCCEE----------ECCHHHHHHHHHHHHHTTC----CTTSSS---CCEEEEESSCCCHHHHHHHHHHHT--SEEE
T ss_pred ---CCCEE----------EECHHHHHHHHHHHHHcCC----CcccCC---ccEEEEeCCcCCHHHHHHHHHHhC--ccEE
Confidence 23322 3378888888776655321 111334 677777774 467788888885 8888
Q ss_pred ccccccccc-cccccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEeecc----
Q 007532 334 CTMYASSEC-YFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITTYA---- 408 (599)
Q Consensus 334 ~~~Y~asEg-~i~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt~~---- 408 (599)
+.||+||+ ..++... |+ ...++++......+|.+++++. .+|.+|+.|||+||+..
T Consensus 236 -~~YG~TE~~~~~~~~~--~~-~~~g~~~~~~~~~v~i~d~~~g---------------~~~~~g~~Gel~v~~~~~~~~ 296 (436)
T 3qov_A 236 -NSFGMTEMNGPGVAFE--CQ-EQNGMHFWEDCYLVEIIDPETG---------------EPVPEGEIGELVLTTLDREMM 296 (436)
T ss_dssp -EEEEEGGGTEEEEEEE--CT-TCSSEEECTTTEEEEEECTTTC---------------SBCSTTCCEEEEEEESSCCSS
T ss_pred -ecCcchhhcCCeeEEe--cC-CCCeeEEccCceEEEEEECCCC---------------CCCCCCCceEEEEeccCcCCc
Confidence 99999997 3223222 22 2356766556678899886543 14679999999999742
Q ss_pred ceeccccCCEEEEeeccCC------CCEE-EEEeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCC
Q 007532 409 GLYRYRVGDILRVIGFHNS------APQF-HFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTK 481 (599)
Q Consensus 409 GLyRYr~GDvV~v~gf~~~------~P~i-~f~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~ 481 (599)
...||+|||++++.. ++ .|++ .|+||.+|+++++|+++++.+|+++|.+. .++. ..+.+.....
T Consensus 297 ~~~~y~TGDl~~~~~--~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~-~~~vv~~~~~ 367 (436)
T 3qov_A 297 PLIRYRTRDLTRILP--GKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELG-SNYLITLETV 367 (436)
T ss_dssp CCCSEEEEEEECEEC--SCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEE-EEEEEEEEEE
T ss_pred eEEEEEcCCEEEEcC--CCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcC-CcEEEEEEcC
Confidence 267899999999985 34 4556 99999999999999999999999999652 2322 1233322221
Q ss_pred CCCceEEEEEEEeecCCCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCccHHH
Q 007532 482 TIPGHYVIYWELLIKDSANSPTNEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVRNGTFEE 547 (599)
Q Consensus 482 ~~p~hY~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~LN~~Y~~~R~~~g~l~p~~v~iv~~gtF~~ 547 (599)
.....-++++++. .. ...+....+.+.+.+.+.| .... .+ |..|.+|+.+.+.+
T Consensus 368 ~~~~~l~a~v~~~-~~--~~~~~~~~~~l~~~l~~~l-------~~~~-~~-p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 368 NNQDEMIVEVELS-DL--STDNYIELEKIRRDIIRQL-------KDEI-LV-TPKVKLVKKGSLPQ 421 (436)
T ss_dssp TTEEEEEEEEEEC-TT--CCCCHHHHHHHHHHHHHHH-------HHHH-SS-CCEEEEECTTCCC-
T ss_pred CCCcEEEEEEEEc-Cc--cccchhhHHHHHHHHHHHH-------HHhc-CC-ceEEEEeCCCcccC
Confidence 1223455777775 21 1122223444555565666 2111 23 66899999888875
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.90 E-value=4.8e-22 Score=215.51 Aligned_cols=386 Identities=15% Similarity=0.138 Sum_probs=225.2
Q ss_pred HcHHHHHHHHHHHHHHhc-CCChHHHhc----CC--CCCCCHHHHhhcCCCCCccchhHHHHHHHcCCCcccccccccce
Q 007532 31 RNAEAVQEKVLAEILSRN-ADVEYLKRY----KL--GGATDRETFKSKLPIIKYEDLQPEIQRIANGDRSAILSAHPISE 103 (599)
Q Consensus 31 ~~~~~~Q~~~L~~iL~~~-~~T~ygr~~----gf--~~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~~ 103 (599)
++.++.|.+.|+++|+.. +++.||+++ |+ .+|.+++||+ ++|+++|++++.... .+. .-...+.+.+
T Consensus 23 ~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~~~~~~ 96 (443)
T 2y4o_A 23 DELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FGL--FAVPREQVVR 96 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TTT--CSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Ccc--cCCChhheEE
Confidence 568899999999999975 899999975 54 4689999996 899999999964321 111 1123455567
Q ss_pred eecccccCCCCccccccChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccCccCCCCceeeccccccccccccc
Q 007532 104 FLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKSETRTPGGLLARPVLTSYYKSEHFK 183 (599)
Q Consensus 104 f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~~~ 183 (599)
+..||||| |+||.+++|+..+......... ... .+ ++..+..+... .+.....+++
T Consensus 97 i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~---~~~-~~-~~~~~d~~l~~--~~~~~~~~~~---------------- 152 (443)
T 2y4o_A 97 VHASSGTT-GKPTVVGYTARDIDTWANVTAR---SIR-AA-GGRPGDTLHNA--FGYGLFTGGL---------------- 152 (443)
T ss_dssp EEEECCSS-SSCEEEEECHHHHHHHHHHHHH---HHH-HT-TCCTTCEEEEC--SCCSSSHHHH----------------
T ss_pred EEECCCCC-CCceEEecCHHHHHHHHHHHHH---HHH-Hc-CCCCCCEEEEe--ccCcccccHH----------------
Confidence 88999999 8999999999976543221111 111 11 12233332211 1100000000
Q ss_pred CCCCCCCCccCCchhhhhccChhhhHHHHHHhhhccccceeEEeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007532 184 TRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIESGTLNQKITD 263 (599)
Q Consensus 184 ~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~i~~~~~~~ll~~~~~le~~w~~l~~dI~~gt~~~~i~~ 263 (599)
...+..+++|-. +..+. .+ +-+++++.|++. +++.
T Consensus 153 -----------------------~~~~~~~~~G~~----~~~~~-~~-------------~~~~~~~~i~~~----~~t~ 187 (443)
T 2y4o_A 153 -----------------------GIHYGAERLGCM----VVPMS-GG-------------QTEKQVQLIRDF----EPKI 187 (443)
T ss_dssp -----------------------HHHHHHHHHTCE----EECCC-SC-------------CHHHHHHHHHHH----CCSE
T ss_pred -----------------------HHHHHHHHcCCE----EEECC-CC-------------CHHHHHHHHHHh----CCcE
Confidence 001111111110 00000 01 123344445543 2333
Q ss_pred chhhhhhcccCCCCHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccc
Q 007532 264 PSIKDCLGKTLKPNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASS 340 (599)
Q Consensus 264 ~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~as 340 (599)
.. ..|..+..|.+...+.+. ..-+++ ++.+++||. ...++.+++.+| ++++ +.||+|
T Consensus 188 l~----------~~Ps~~~~l~~~~~~~~~----~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~g--~~v~-~~YG~T 247 (443)
T 2y4o_A 188 IL----------VTPSYMLNLIDEMVRQGM----DPAESS---LKIGIFGAEPWTQALRNEVETRVG--IDAL-DIYGLS 247 (443)
T ss_dssp EE----------ECHHHHHHHHHHHHHTTC----CGGGSS---CCEEEEESSCCCHHHHHHHHHHHT--CEEE-EEEEET
T ss_pred EE----------ECHHHHHHHHHHHHHcCC----CcccCC---ceEEEECCCcCCHHHHHHHHHHhC--cCEE-eccCch
Confidence 33 378888887776554322 111345 566777763 467788888885 7888 999999
Q ss_pred cc-c--ccccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEeeccc----eecc
Q 007532 341 EC-Y--FGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITTYAG----LYRY 413 (599)
Q Consensus 341 Eg-~--i~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt~~G----LyRY 413 (599)
|+ . ++.. |+....++++.....++|++++++.. +|.+|+.|||+||+... +.||
T Consensus 248 E~~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g~---------------~~~~G~~Gel~v~~~t~~~~p~~~y 308 (443)
T 2y4o_A 248 EVMGPGVACE----CVETKDGPVIWEDHFYPEIIDPVTGE---------------VLPDGSQGELVFTSLTKEAMPVIRY 308 (443)
T ss_dssp TTTEEEEEEE----CTTTCCSEEECTTTEEEEEECTTTCC---------------BCCTTCCEEEEEEESSCSSSCCSSE
T ss_pred hhcCCeEEec----cCCCCCceEEccCCeEEEEEcCCCCC---------------CCCCCCceEEEEeCCCcccChhhee
Confidence 95 2 3432 22222367665566788999865431 35789999999997532 5789
Q ss_pred ccCCEEEEeec-cCCCCEE-EEEeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCCCCCceEEEEE
Q 007532 414 RVGDILRVIGF-HNSAPQF-HFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYW 491 (599)
Q Consensus 414 r~GDvV~v~gf-~~~~P~i-~f~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~hY~l~~ 491 (599)
+|||++++..- ....|+| .|+||.+|+++++|++|++.+|+++|.+. .++. ..+.+..........-++++
T Consensus 309 ~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~~~a~v 381 (443)
T 2y4o_A 309 RTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLSRDGHMDRLDLAV 381 (443)
T ss_dssp EEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEEEETTEEEEEEEE
T ss_pred ecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEecCCCCceEEEEE
Confidence 99999999861 1124677 89999999999999999999999999652 2321 12333222111223445666
Q ss_pred EEeecCCCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCccHHH
Q 007532 492 ELLIKDSANSPTNEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVRNGTFEE 547 (599)
Q Consensus 492 E~e~~~~~~~~~~~~l~~~~~~ld~~LN~~Y~~~R~~~g~l~p~~v~iv~~gtF~~ 547 (599)
++..... ........+.+.+.+.+.| .... .+ |.+|.+|+.+.+.+
T Consensus 382 ~~~~~~~-~~~~~~~~~~l~~~l~~~l-------~~~~-~~-p~~v~~v~~~~lP~ 427 (443)
T 2y4o_A 382 ELRSEAA-ASVTDGERAALARELQHRI-------KTMV-GV-SSGVTVLAAGGIPA 427 (443)
T ss_dssp EECHHHH-TTCCHHHHHHHHHHHHHHH-------HHHT-CC-CCEEEEECTTCSCC
T ss_pred EECCccc-ccchhhHHHHHHHHHHHHH-------HHHh-CC-ceEEEEeCCCcccC
Confidence 6641000 0011223344455555555 2111 23 56788998777763
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.90 E-value=2.8e-22 Score=216.99 Aligned_cols=383 Identities=16% Similarity=0.163 Sum_probs=224.6
Q ss_pred HcHHHHHHHHHHHHHHhc-CCChHHHhc----CC--CCCCCHHHHhhcCCCCCccchhHHHHHHHcCCCcccccccccce
Q 007532 31 RNAEAVQEKVLAEILSRN-ADVEYLKRY----KL--GGATDRETFKSKLPIIKYEDLQPEIQRIANGDRSAILSAHPISE 103 (599)
Q Consensus 31 ~~~~~~Q~~~L~~iL~~~-~~T~ygr~~----gf--~~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~~ 103 (599)
++.++.|.+.|+++|++. +++.|++++ |+ .+|.+++||+ ++|+++|++++.... .+- .-...+.+.+
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~~--~~~~~~~~~~ 94 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FGM--FAVPQDRISR 94 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TTT--CSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Ccc--ccCChhHeEE
Confidence 568899999999999975 899999975 44 3688999996 899999999875321 111 1123445567
Q ss_pred eecccccCCCCccccccChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccCccCCCCceeeccccccccccccc
Q 007532 104 FLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVPGLDKGKALYFLFVKSETRTPGGLLARPVLTSYYKSEHFK 183 (599)
Q Consensus 104 f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~~~~ 183 (599)
+..||||| |+||.+++|+..+......... ... .+ ++..+..+... .+ .....+|+
T Consensus 95 i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~---~~~-~~-~~~~~d~~~~~-~~-~~~~~~~~---------------- 150 (437)
T 2y27_A 95 IHASSGTT-GKPTVVGYTAADIDTWANLVAR---SIR-AA-GARRGDKVHVS-YG-YGLFTGGL---------------- 150 (437)
T ss_dssp EEECCCTT-SSCCEEEECHHHHHHHHHHHHH---HHH-HT-TCCTTCEEEEC-SC-CSSSHHHH----------------
T ss_pred EEECCCCC-CCceEEecCHHHHHHHHHHHHH---HHH-Hc-CCCCCCEEEEc-cc-ccccccch----------------
Confidence 88999999 8999999999976543221111 111 11 12233332221 11 00000000
Q ss_pred CCCCCCCCccCCchhhhhccChhhhHHHHHHhhhccccceeEEeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007532 184 TRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASGLLRAIRFLQLHWQALASDIESGTLNQKITD 263 (599)
Q Consensus 184 ~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~i~~~~~~~ll~~~~~le~~w~~l~~dI~~gt~~~~i~~ 263 (599)
...+..++.|.. +..+ ..+ +.+.+++.|++. +++.
T Consensus 151 -----------------------~~~~~~~~~G~~----~~~~-~~~-------------~~~~~~~~i~~~----~~t~ 185 (437)
T 2y27_A 151 -----------------------GAHYGAERAGLT----VIPF-GGG-------------QTEKQVQLIQDF----RPDI 185 (437)
T ss_dssp -----------------------HHHHHHHHTTCE----EECC-CSC-------------CHHHHHHHHHHH----CCSE
T ss_pred -----------------------HHHHHHHHcCCE----EEeC-CCC-------------CHHHHHHHHHHh----CCCE
Confidence 000111111110 0000 001 123444555554 2333
Q ss_pred chhhhhhcccCCCCHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccc
Q 007532 264 PSIKDCLGKTLKPNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASS 340 (599)
Q Consensus 264 ~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~as 340 (599)
.. ..|..+..|.+...+.+. ..-+++ ++.+++||. ...++.+++.+| ++++ +.||+|
T Consensus 186 l~----------~~Ps~~~~l~~~~~~~~~----~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~g--~~v~-~~YG~T 245 (437)
T 2y27_A 186 IM----------VTPSYMLSIADEIERQGL----DPVQSS---LRIGIFGAEPWTNDMRVAIEQRMG--IDAV-DIYGLS 245 (437)
T ss_dssp EE----------ECHHHHHHHHHHHHHTTC----CGGGSS---CCEEEEESSCCCHHHHHHHHHHHT--SEEE-EEEEET
T ss_pred EE----------ECHHHHHHHHHHHHHcCC----CcccCC---eeEEEEcCccCCHHHHHHHHHHHC--cCEE-ecCCch
Confidence 33 378888887776554321 111345 566777763 467788888785 7888 999999
Q ss_pred cc--c-ccccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEeeccc----eecc
Q 007532 341 EC--Y-FGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITTYAG----LYRY 413 (599)
Q Consensus 341 Eg--~-i~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt~~G----LyRY 413 (599)
|+ . ++++ |+....++++.....++|++++++. .+|.+|+.|||+||+... +.||
T Consensus 246 E~~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g---------------~~~~~g~~Gel~v~~~t~~~~~~~~y 306 (437)
T 2y27_A 246 EVMGPGVASE----CVETKDGPTIWEDHFYPEIIDPETG---------------EVLPDGELGELVFTSLTKEALPIIRY 306 (437)
T ss_dssp TTTEEEEEEC----CTTTCSSCEECTTTEEEEEECTTTC---------------CBCCTTCCEEEEEEESSCSSSCCCSE
T ss_pred hhcCCeeEEe----cCCCCCceeEccCceEEEEEcCCCC---------------CCCCCCCccEEEEecCCcCCchhhee
Confidence 95 2 4432 2222225666556678999986543 135789999999997533 6789
Q ss_pred ccCCEEEEeec-cCCCCEE-EEEeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCCCCCceEEEEE
Q 007532 414 RVGDILRVIGF-HNSAPQF-HFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYW 491 (599)
Q Consensus 414 r~GDvV~v~gf-~~~~P~i-~f~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~hY~l~~ 491 (599)
+|||++++... -...|+| .|+||.+|+++++|+++++.+|+++|.+. .++. ..+.+...........++++
T Consensus 307 ~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~l~a~v 379 (437)
T 2y27_A 307 RTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ------RALA-PHYQIVLTKEGPLDVLTLNV 379 (437)
T ss_dssp EEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC------TTBC-SCCEEEEEEETTEEEEEEEE
T ss_pred ecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC------cCcC-ccEEEEEeecCCCceEEEEE
Confidence 99999999852 2246778 89999999999999999999999999652 2221 12322222111223445666
Q ss_pred EEeecCCCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCccHH
Q 007532 492 ELLIKDSANSPTNEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVRNGTFE 546 (599)
Q Consensus 492 E~e~~~~~~~~~~~~l~~~~~~ld~~LN~~Y~~~R~~~g~l~p~~v~iv~~gtF~ 546 (599)
++.. + ...+....+.+.+.+.+.| .... .+ |..|.+++.+.|.
T Consensus 380 ~~~~-~--~~~~~~~~~~l~~~l~~~l-------~~~~-~~-p~~v~~v~~~~lP 422 (437)
T 2y27_A 380 EPCP-E--TAPDTAAIQVAKQALAYDI-------KSLI-GV-TAVINVLPVNGIE 422 (437)
T ss_dssp CBCT-T--TTTCHHHHHHHHHHHHHHH-------HHHH-CC-CEEEEECCTTCSC
T ss_pred EECC-C--ccchhhhHHHHHHHHHHHH-------HHhc-CC-ceEEEEeCCCCcc
Confidence 6531 1 1111123344445555555 2111 13 5678888877776
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.64 E-value=1.1e-15 Score=161.42 Aligned_cols=307 Identities=9% Similarity=0.031 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhc-C---CChHHHhc----CCC---CCCCHHHHhhcCCCCCccchhH-HHHHHHcCCCcccccccccc
Q 007532 35 AVQEKVLAEILSRN-A---DVEYLKRY----KLG---GATDRETFKSKLPIIKYEDLQP-EIQRIANGDRSAILSAHPIS 102 (599)
Q Consensus 35 ~~Q~~~L~~iL~~~-~---~T~ygr~~----gf~---~i~s~edF~~~vPl~~Yed~~p-~ier~~~Ge~~~ll~~~pi~ 102 (599)
..+++.|+++++++ . +++|||++ |++ +|++++|++ ++|+++ ++++. +.+.+..- . +..+.+.
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p~---~-~~~~~~a 94 (369)
T 3hgu_A 21 NDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVPQ---G-LPADSHP 94 (369)
T ss_dssp TCHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSCT---T-SCTTCCC
T ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCCc---c-CCccccE
Confidence 35788999999975 7 89999964 553 688999995 899999 99875 33222210 1 1345566
Q ss_pred eeecccccCCCCccccccChHHHHHHHHHHHHHHHHHhhcCC--CCCCCceEEEEecccCccCCCCceeecccccccccc
Q 007532 103 EFLTSSGTSAGERKLMPTIQEELDRRQLLYSLLMPVMNLYVP--GLDKGKALYFLFVKSETRTPGGLLARPVLTSYYKSE 180 (599)
Q Consensus 103 ~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p--~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~ 180 (599)
+...||||| |+||-+.+|+..+....... .+... ++..+..+... .+...+. .|+..
T Consensus 95 ~i~~TSGTT-G~PKgv~~t~~~~~~~~~~~-------~~~~~~~~~~~~d~~l~~-~p~g~~~-~g~~~----------- 153 (369)
T 3hgu_A 95 QVYESGGTT-GAPKYVVAYDAWIEALISWR-------MSGYQHRPGRPSGNTLAA-IPTGPHI-VGAIN----------- 153 (369)
T ss_dssp EEEEECC----CCEEEEECHHHHHHHHHHH-------TTTTTTSTTCCCCEEEEC-SCCTTCH-HHHHH-----------
T ss_pred EEEECCCCC-CCCCEEEECHHHHHHHHHHH-------HhhHHhhCCCCcceEEEe-cCCCchh-hhHHH-----------
Confidence 889999999 89999999998764432211 11111 22223222211 1110000 00000
Q ss_pred cccCCCCCCCCccCCchhhhhccChhhhHHHHHHhhhccccceeEEeeccHHH----H------HHHHHHHHHHHHHHHH
Q 007532 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYVQMLCGLLEREQVLRLGAVFASG----L------LRAIRFLQLHWQALAS 250 (599)
Q Consensus 181 ~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~i~~~~~~~----l------l~~~~~le~~w~~l~~ 250 (599)
.+..++.|- ..+...+.+. + ...-...+...+++++
T Consensus 154 ----------------------------~~~~~~~G~------~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (369)
T 3hgu_A 154 ----------------------------KERALRLGG------MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQN 199 (369)
T ss_dssp ----------------------------HHHHHHTTS------CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHcCC------EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence 000010000 0000001111 0 0111123334455666
Q ss_pred HHHhccCCCCCCCchhhhhhcccCCCCHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHH-HHh
Q 007532 251 DIESGTLNQKITDPSIKDCLGKTLKPNTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLD-YYS 326 (599)
Q Consensus 251 dI~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~-~~~ 326 (599)
.|++. +++...+ .|..+..|.+..... ....++ ++.+++||. ...+++++ +.+
T Consensus 200 ~i~~~----~~t~l~~----------~Ps~~~~l~~~~~~~------~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~~ 256 (369)
T 3hgu_A 200 TLMNQ----DIRFLVT----------TPPVLRELLKRPEVV------LQMKQS---LAQITLGGTELNLDEIKFIASEIL 256 (369)
T ss_dssp HHHHS----CEEEEEE----------CHHHHHHHTTCHHHH------HHHHHH---CSEEEEESSCCCHHHHHHHHHHTC
T ss_pred HHHhC----CCCEEEe----------CHHHHHHHHhhhhhh------ccccCC---eeEEEECCccCCHHHHHHHHHHhC
Confidence 77765 3333333 677666665432110 011123 567777774 46678888 788
Q ss_pred CCCCCccccccccccccccccCCCCCCCCCCceeee----cCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEE
Q 007532 327 GGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIM----PNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYEL 402 (599)
Q Consensus 327 g~~~~~~~~~Y~asEg~i~i~~~~~~~~~~~~~~l~----~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~Yel 402 (599)
++ ++++ +.||+||+.... ..|+....|.++. .....++.+++++. ..|.+|+.|||
T Consensus 257 p~-~~v~-~~YG~TE~~~~~---~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g---------------~~vp~G~~GEl 316 (369)
T 3hgu_A 257 PD-CEFS-ASYGSTSALGVS---RSLLITSESQQVIYDSFSPFITYDVVDSITA---------------QTVEYGERGNV 316 (369)
T ss_dssp TT-SEEE-EEEEEGGGTEEE---EECCBCTTCSSCEEECCTTTEEEEEECTTTC---------------SBCCTTCEEEE
T ss_pred CC-cEEE-cccCchhhhcce---eccccccCCCcccccCCCCCeEEEEECCCCC---------------cCCCCCCceEE
Confidence 66 8998 999999974322 2232211344322 12246677765332 24679999999
Q ss_pred EEeecc---ceeccccCCEEEEeeccCCC-----CEEEEEeecCceeeccc
Q 007532 403 VITTYA---GLYRYRVGDILRVIGFHNSA-----PQFHFVRRKNVLLSIES 445 (599)
Q Consensus 403 viTt~~---GLyRYr~GDvV~v~gf~~~~-----P~i~f~gR~~~~l~~~G 445 (599)
+||++. -+.||++||+.+.......- --++.++|.++...|.|
T Consensus 317 ~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 317 IVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred EEEEcCcccccccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 999853 29999999999877543221 14566666665555554
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.51 E-value=1.8e-12 Score=144.26 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCC-
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPIC- 352 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~- 352 (599)
.|..+..|.+..... ..-+++ ++.+++||. ...++++++.+++ ++++ +.||+||+...+...+..
T Consensus 290 ~P~~~~~l~~~~~~~------~~~l~~---lr~i~~gG~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~ 358 (548)
T 2d1s_A 290 VPTLFAILNKSELLN------KYDLSN---LVEIASGGAPLSKEVGEAVARRFNL-PGVR-QGYGLTETTSAIIITPEGD 358 (548)
T ss_dssp CHHHHHHHHHCSCGG------GSCCTT---CCEEEECSSCCCHHHHHHHHHHTTC-SCCE-EEEECGGGSSEEEECCTTC
T ss_pred cHHHHHHHHhCcccc------cccccc---eeEEEEcCccCCHHHHHHHHHHcCC-Ccee-eccccccccceeeecCccc
Confidence 677777665432111 112344 667777774 4566788888866 7888 999999984322111111
Q ss_pred -CCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec--------------cc
Q 007532 353 -RPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR--------------YR 414 (599)
Q Consensus 353 -~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR--------------Yr 414 (599)
.....+. ..|+. -.+.+++++. .+|.+|+.|||+|+. ..|+|+ |+
T Consensus 359 ~~~~~~G~-~~~~~-~~~i~d~~~~---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~ 421 (548)
T 2d1s_A 359 DKPGASGK-VVPLF-KAKVIDLDTK---------------KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLH 421 (548)
T ss_dssp CCTTCCBE-ECTTC-EEEEECTTTC---------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred CCCCCCCc-cCCCc-eEEEEeCCcC---------------ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEE
Confidence 1112222 23332 3555654322 246789999999986 355553 99
Q ss_pred cCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 415 VGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 415 ~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
|||++++.. ...+.|+||.+|+++++|+++++.+||++|.+
T Consensus 422 TGDl~~~~~----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 422 TGDIGYYDE----EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp EEEEEEECT----TCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHT
T ss_pred ccCEEEEcC----CCeEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 999999973 45799999999999999999999999999965
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.51 E-value=1.6e-12 Score=146.00 Aligned_cols=128 Identities=19% Similarity=0.300 Sum_probs=90.7
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCC--CCCCCceeeecCceEEEEeeCCCCCCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPIC--RPSEVSYTIMPNMAYFEFLPQEPSDSFGL 381 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~--~~~~~~~~l~~~~~ffEFip~~~~~~~~~ 381 (599)
++.+++||. ...++++++.+| ++++ +.||.||+.+.+...+.. .+...+. ..|+. -++.++++.
T Consensus 343 lr~i~~gGe~l~~~~~~~~~~~~g--~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~v~ivd~~g------ 411 (580)
T 3etc_A 343 LKYAVVAGEPLNPEVFNRFLEFTG--IKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPGY-KIELMDRDG------ 411 (580)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHHS--CCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTTC-EEEEECTTS------
T ss_pred ceEEEEccCCCCHHHHHHHHHHhC--CeEe-cccccccccceeecCCCCCCCCCcccc-CCCCC-EEEEECCCC------
Confidence 667778874 355677777775 7888 999999985433222211 1112233 23333 345555431
Q ss_pred CCCCCCCcccccCCCCCeEEEEEeec--------cceec-------------cccCCEEEEeeccCCCCEEEEEeecCce
Q 007532 382 TSSDPQPVDLVDVEMGKEYELVITTY--------AGLYR-------------YRVGDILRVIGFHNSAPQFHFVRRKNVL 440 (599)
Q Consensus 382 ~~~~~~~l~~~ev~~G~~YelviTt~--------~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~ 440 (599)
.+|.+|+.|||+|++. .|+|+ |+|||++++. ....+.|+||.+|+
T Consensus 412 ----------~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d----~dG~l~~~GR~dd~ 477 (580)
T 3etc_A 412 ----------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMD----EDGYLWFVGRADDI 477 (580)
T ss_dssp ----------CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEEC----TTSCEEEEEESSSC
T ss_pred ----------CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEEC----CCCcEEEEecCCCE
Confidence 2467999999999852 35555 9999999997 35689999999999
Q ss_pred eeccccccCHHHHHHHHHH
Q 007532 441 LSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 441 l~~~GEk~~e~~v~~av~~ 459 (599)
+++.|++|.+.+||++|.+
T Consensus 478 Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 478 IKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp EEETTEEECHHHHHHHHTT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999999965
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.50 E-value=2.5e-12 Score=141.61 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=90.0
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCC--CCCCCceeeecCceEEEEeeCCCCCCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPIC--RPSEVSYTIMPNMAYFEFLPQEPSDSFGL 381 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~--~~~~~~~~l~~~~~ffEFip~~~~~~~~~ 381 (599)
++.+++||. ...++.+++.+| ++++ +.||+||+.+........ .+...+. .+|+. -.+.+++++.
T Consensus 270 lr~~~~gg~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~~g----- 339 (503)
T 4fuq_A 270 MRLFISGSAPLLADTHREWSAKTG--HAVL-ERYGMTETNMNTSNPYDGDRVPGAVGP-ALPGV-SARVTDPETG----- 339 (503)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHHS--CCEE-ECCEETTTEECBCCCSSSCCCTTEEEE-BCTTC-EEEEECTTTC-----
T ss_pred cEEEEECCCCCCHHHHHHHHHHhC--CCcc-ceEcccccCcccccCCCCCCcCCcccc-CCCCe-EEEEEECCCC-----
Confidence 667778874 355567777776 6888 999999985432211111 0111111 22332 3455553322
Q ss_pred CCCCCCCcccccCCCCCeEEEEEee---ccceec--------------cccCCEEEEeeccCCCCEEEEEeecCceeecc
Q 007532 382 TSSDPQPVDLVDVEMGKEYELVITT---YAGLYR--------------YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIE 444 (599)
Q Consensus 382 ~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~ 444 (599)
.+|.+|+.|||+|+. ..|+|+ |+|||++++. ....+.|+||.+|+++++
T Consensus 340 ----------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~dd~ik~~ 405 (503)
T 4fuq_A 340 ----------KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID----ERGYVHILGRGKDLVITG 405 (503)
T ss_dssp ----------CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC----TTCEEEECCSSTTCEEET
T ss_pred ----------CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc----CCCcEEEEecCCCEEEEC
Confidence 246899999999985 467765 9999999997 356999999999999999
Q ss_pred ccccCHHHHHHHHHH
Q 007532 445 SDKTDEAELQNAIDN 459 (599)
Q Consensus 445 GEk~~e~~v~~av~~ 459 (599)
|+++.+.+||++|.+
T Consensus 406 G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 406 GFNVYPKEIESEIDA 420 (503)
T ss_dssp TEEECHHHHHHHHHT
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999999965
No 11
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.47 E-value=6.3e-12 Score=138.46 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccC---CC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNL---NP 350 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~---~~ 350 (599)
.|..+..|..... ......+. ++.+++||. ....+++++.+++ ++++ +.||+||+...+.. ..
T Consensus 241 ~P~~~~~l~~~~~------~~~~~~~~---l~~~~~~G~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~ 309 (511)
T 3e7w_A 241 TPSFVQMCLMDPG------FSQDLLPH---ADTFMFCGEVLPVSVAKALLERFPK-AKIF-NTYGPTEATVAVTSVEITN 309 (511)
T ss_dssp CHHHHHHHHTSTT------CSTTTCTT---CCEEEECSSCCCHHHHHHHHHHCTT-CEEE-ECCCCGGGSSCSEEEEECH
T ss_pred cHHHHHHHHhccc------cccccCCc---ccEEEEecCCCCHHHHHHHHHHCCC-cEEE-eCcccchheeeeeEEeccc
Confidence 6666666543221 11234455 556677763 4566778888866 8898 99999998432210 00
Q ss_pred ----CCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---cccee------------
Q 007532 351 ----ICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLY------------ 411 (599)
Q Consensus 351 ----~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLy------------ 411 (599)
.......+. ..|+. -++.++++. .+|.+|+.|||+|+. ..|+|
T Consensus 310 ~~~~~~~~~~~G~-~~~~~-~~~i~d~~g----------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 371 (511)
T 3e7w_A 310 DVISRSESLPVGF-AKPDM-NIFIMDEEG----------------QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS 371 (511)
T ss_dssp HHHTTCSSCCCBE-ECTTC-EEEEECTTS----------------CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE
T ss_pred cccccCCcCCCcc-eeCCC-EEEEECCCC----------------CCCCCCCceEEEEecCccChhhCCCcccchhhhcC
Confidence 000111222 22332 244454321 246799999999984 34554
Q ss_pred -----ccccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 412 -----RYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 412 -----RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
.|+|||++++. ...+.|+||.+|+++++|+++++.+||++|.+
T Consensus 372 ~~g~~~~~TGDlg~~~-----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 372 HEGQWAYRTGDAGFIQ-----DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp SSSSEEEEEEEEEEEE-----TTEEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred CCCCEEEeCCCeEEcc-----CCeEEEEccccCEEEECCEEeCHHHHHHHHHh
Confidence 59999999884 36899999999999999999999999999976
No 12
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.47 E-value=2.4e-12 Score=142.84 Aligned_cols=151 Identities=16% Similarity=0.171 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccc--cccC---
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYF--GLNL--- 348 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i--~i~~--- 348 (599)
.|..+..|.+..... ..-.++ ++.+++||. ....+.+++.+++ ++++ +.||+||+.. +.+.
T Consensus 278 ~P~~~~~l~~~~~~~------~~~l~~---lr~i~~gGe~l~~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~ 346 (536)
T 3ni2_A 278 VPPVMMSIAKSPDLD------KHDLSS---LRMIKSGGAPLGKELEDTVRAKFPQ-ARLG-QGYGMTEAGPVLAMCLAFA 346 (536)
T ss_dssp CHHHHHHHHTCSCGG------GSCCTT---CCEEEEESSCCCHHHHHHHHHHCTT-SEEE-EEEECGGGSSEEEECGGGS
T ss_pred cHHHHHHHHhCcccc------cCCCcc---ceEEEECCCCCCHHHHHHHHHHCCC-CCcc-ccccccccchhhhcccccC
Confidence 666666665432211 122344 667777774 3566778888866 8888 9999999843 2221
Q ss_pred -CC-CCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec-----------
Q 007532 349 -NP-ICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR----------- 412 (599)
Q Consensus 349 -~~-~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR----------- 412 (599)
.+ ...+...+. .+|+. -.+.+++++. .+|.+|+.|||+|+. ..|+|+
T Consensus 347 ~~~~~~~~~~~G~-~~~~~-~~~i~d~~~~---------------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 347 KEPFDIKPGACGT-VVRNA-EMKIVDPETG---------------ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp SSCCCCCTTCCCE-ECSSC-EEEEECTTTC---------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred CccccCCCCCeeE-eCCCc-EEEEEeCCCC---------------cCCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 00 001111222 23333 3555654332 246799999999985 356664
Q ss_pred ---cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 413 ---YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 413 ---Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
|||||++++. ....+.|+||.+|+++++|+++++.+||++|.+
T Consensus 410 ~g~~~TGDl~~~~----~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 410 EGWLHTGDIGYID----DDDELFIVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp TSCEEEEEEEEEC----TTSCEEEEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred CCceEcccEEEEc----CCceEEEEecccceEEECCEEECHHHHHHHHHh
Confidence 9999999997 356899999999999999999999999999865
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.46 E-value=5.3e-12 Score=138.81 Aligned_cols=152 Identities=12% Similarity=0.175 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCCC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICR 353 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~ 353 (599)
.|..+..|.+...+. . -..-+++ ++.+++||. ...++++++.++ ++++ +.||+||+.+.+... .
T Consensus 251 ~P~~~~~l~~~~~~~-~---~~~~l~~---lr~~~~gG~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~-~-- 317 (504)
T 1t5h_X 251 TPTHLDALAAAAAHA-G---SSLKLDS---LRHVTFAGATMPDAVLETVHQHLP--GEKV-NIYGTTEAMNSLYMR-Q-- 317 (504)
T ss_dssp CHHHHHHHHHHHCCT-T---CCCCCTT---CCEEEECCTTCCHHHHHHHHHHCC--SEEE-EEEEETTTEEEEEEE-S--
T ss_pred ChHHHHHHHhhhccc-c---ccccCcc---ccEEEEcCCcCCHHHHHHHHHhcC--ccee-eeecccccccccccc-C--
Confidence 787777776654221 0 0111244 667777874 356677777776 6788 999999984433211 1
Q ss_pred CCCCceeeecC-ceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEe-e---ccceec-------------ccc
Q 007532 354 PSEVSYTIMPN-MAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVIT-T---YAGLYR-------------YRV 415 (599)
Q Consensus 354 ~~~~~~~l~~~-~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviT-t---~~GLyR-------------Yr~ 415 (599)
. ..+..-.|. ..-...++.+... ...|.+|+.|||+|+ . ..|+|+ |+|
T Consensus 318 ~-~~~~~g~p~~~~~~~i~~~~~~~-------------~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~T 383 (504)
T 1t5h_X 318 P-KTGTEMAPGFFSEVRIVRIGGGV-------------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383 (504)
T ss_dssp C-SSSSEEBCCTTCCEEEECTTSCT-------------TCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEE
T ss_pred C-CCCccccCCCCCceeEEeccCCC-------------CCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCcccc
Confidence 1 111111221 1112333322110 135689999999998 3 367887 999
Q ss_pred CCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 416 GDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 416 GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
||++++.. ...+.|+||.+|+++++|+++++.+||++|.+
T Consensus 384 GDlg~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 384 SDVAVWTP----EGTVRILGRVDDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEEEEECT----TSCEEEEEEGGGCEEETTEEECHHHHHHHHTT
T ss_pred CcEEEECC----CceEEEeCcccCEEEECCEEECHHHHHHHHHh
Confidence 99999973 46899999999999999999999999999964
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.46 E-value=2.6e-12 Score=141.49 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCC-
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPIC- 352 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~- 352 (599)
.|..+..|...... -....|+ ++.+++||. ....+++.+.+++ ++++ +.||+||+...+...+..
T Consensus 242 ~P~~~~~l~~~~~~------~~~~~~~---lr~~~~~G~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~ 310 (512)
T 3fce_A 242 TPSFAEMCLMEASF------SESMLPN---MKTFLFCGEVLPNEVARKLIERFPK-ATIM-NTYGPTEATVAVTGIHVTE 310 (512)
T ss_dssp CHHHHHHHTTSTTC------STTTSTT---CCEEEECSSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGSSCSEEEECCH
T ss_pred cHHHHHHHHhhccc------cchhCcc---ccEEEEecCcCCHHHHHHHHHHCCC-CEEE-eCcccChhhhheeeEEecc
Confidence 67666655432221 1123445 667777774 4566778787866 8898 999999985422110000
Q ss_pred ------CCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec-----------
Q 007532 353 ------RPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR----------- 412 (599)
Q Consensus 353 ------~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR----------- 412 (599)
.....+.. .++. -...++.+. .++.+|+.|||+|+. ..|+|+
T Consensus 311 ~~~~~~~~~~~G~~-~~~~-~~~i~d~~g----------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 372 (512)
T 3fce_A 311 EVLDQYKSLPVGYC-KSDC-RLLIMKEDG----------------TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTM 372 (512)
T ss_dssp HHHHHCSSCCCEEE-CTTC-EEEEECSSS----------------CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEE
T ss_pred ccccccCCCccccc-cCCc-EEEEECCCC----------------CCCCCCCeEEEEEeccccChhhcCCchhhhhcccc
Confidence 00112221 2222 233343221 246789999999985 366663
Q ss_pred ------cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 413 ------YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 413 ------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
|+|||++++. ...+.|+||.+|+++++|+++++.+||++|.+
T Consensus 373 ~~~~~~~~TGDlg~~~-----dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~ 420 (512)
T 3fce_A 373 IDGERAYKTGDAGYVE-----NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRA 420 (512)
T ss_dssp ETTEEEEEEEEEEEEE-----TTEEEEEEEGGGCEEETTEEECHHHHHHHHHH
T ss_pred CCCCEEEeCCceEEec-----CCEEEEecccCCEEEECCEEECHHHHHHHHHh
Confidence 9999999873 35899999999999999999999999999975
No 15
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.45 E-value=5.5e-13 Score=148.39 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCCC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICR 353 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~ 353 (599)
.|.....|.+..... ..-+++ ++.+++||. ...++++++.++. ..++ +.||+||+...+...+...
T Consensus 288 ~P~~~~~l~~~~~~~------~~~l~~---lr~i~~gG~~l~~~~~~~~~~~~~~-~~v~-~~YG~TE~~~~~~~~~~~~ 356 (550)
T 3rix_A 288 VPTLFSFFAKSTLID------KYDLSN---LHEIASGGAPLSKEVGEAVAKRFHL-PGIR-QGYGLTETTSAILITPEGD 356 (550)
T ss_dssp CHHHHHHHHHCCGGG------GSCCTT---CCEEEECSSCCCHHHHHHHHHHTTC-SCCE-EEEECGGGSSEEEECCTTC
T ss_pred CcHHHHHHHhCcccc------ccCccc---ccEEEEecCCCCHHHHHHHHHHcCC-Cccc-cccCcCccccceecCCCCC
Confidence 677777765543221 112344 667777874 3566778787864 3366 9999999854332222211
Q ss_pred CCCCce-eeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec--------------ccc
Q 007532 354 PSEVSY-TIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR--------------YRV 415 (599)
Q Consensus 354 ~~~~~~-~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR--------------Yr~ 415 (599)
...... ..+|+. -.+.+++++. .+|.+|+.|||+|+. ..|+|+ |+|
T Consensus 357 ~~~~~vG~~~~~~-~~~i~d~~~~---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~T 420 (550)
T 3rix_A 357 DKPGAVGKVVPFF-EAKVVDLDTG---------------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420 (550)
T ss_dssp CCTTEEEEECTTC-EEEEECTTTC---------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred CCCCCcccccCCc-EEEEEeCCCC---------------cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeec
Confidence 111111 122332 3555654432 246799999999985 356664 999
Q ss_pred CCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHH
Q 007532 416 GDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNA 460 (599)
Q Consensus 416 GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a 460 (599)
||++++. ....+.|+||.+|+++++|+++++.+||++|.+.
T Consensus 421 GDl~~~~----~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 421 GDIAYWD----EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp EEEEEEC----TTCCEEEC--------------------------
T ss_pred CcEEEEe----CCceEEEEecchheeEECCEEECHHHHHHHHHhC
Confidence 9999997 3568999999999999999999999999999763
No 16
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.43 E-value=7.8e-12 Score=138.84 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCCC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICR 353 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~ 353 (599)
.|..+..|.+...... .-.++ ++.+++||. ...++++++.+| ++++ +.||.||+.+.+.. ...+
T Consensus 279 ~P~~~~~l~~~~~~~~------~~l~~---lr~~~~gG~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~-~~~~ 345 (539)
T 1mdb_A 279 VPPLAMVWMDAASSRR------DDLSS---LQVLQVGGAKFSAEAARRVKAVFG--CTLQ-QVFGMAEGLVNYTR-LDDP 345 (539)
T ss_dssp CHHHHHHHHHHHHHCC------CCCTT---CCEEEEESSCCCHHHHTTHHHHTC--SEEE-EEEECTTSCEEECC-TTSC
T ss_pred cHHHHHHHHhCccccC------CCccc---eeEEEEcCCCCCHHHHHHHHHHhC--CcEE-EEEcCCCCcccccC-CCCc
Confidence 6776776655443221 12244 667777774 345566777775 7888 99999998655431 1110
Q ss_pred C----CCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec--------------
Q 007532 354 P----SEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR-------------- 412 (599)
Q Consensus 354 ~----~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR-------------- 412 (599)
. ...|.. +++..-...++.+ ..+|.+|+.|||+|+. ..|+|+
T Consensus 346 ~~~~~~~~G~p-~~~~~~~~i~d~~----------------~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 408 (539)
T 1mdb_A 346 EEIIVNTQGKP-MSPYDESRVWDDH----------------DRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408 (539)
T ss_dssp HHHHHHCCCEE-SSTTCEEEEECTT----------------SCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSC
T ss_pred HHhcCCCCCcc-cCCCceEEEECCC----------------CCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCC
Confidence 0 012222 2222223444422 1246799999999985 356653
Q ss_pred cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 413 YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 413 Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
|+|||++++.. ...+.|+||.+|+++++|+++++.+||++|.+
T Consensus 409 ~~TGDlg~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 409 YRTGDIVRLTR----DGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp EEEEEEEEECT----TSCEEEEEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred eecCceEEECC----CCcEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 99999999973 46799999999999999999999999999964
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.42 E-value=4.4e-13 Score=147.55 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=71.8
Q ss_pred eEEEEecchhhhHHHHHHHhCCCCCccccccccccccc-cccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCC
Q 007532 307 LDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYF-GLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSD 385 (599)
Q Consensus 307 l~~~~~g~~~~y~~~l~~~~g~~~~~~~~~Y~asEg~i-~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~ 385 (599)
++.+.+||....++++++.+++ ++++ +.||+||+.. +........+...+.. .|+. -++.++++.
T Consensus 274 lr~~~~~g~~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~p-~~~~-~~~i~d~~~---------- 339 (509)
T 3ivr_A 274 LRAVTGLDTPETIERFEATCPN-ATFW-ATFGQSETSGLSTFAPYRDRPKSAGRP-LFWR-TVAVVDAED---------- 339 (509)
T ss_dssp CCEEEEECCHHHHHHHHHHCTT-CEEE-EEEEEGGGTEEEEEEEGGGSTTSCCEE-CTTC-EEEEECTTS----------
T ss_pred hheecccCChHHHHHHHHhcCC-CeEE-cccCccccccccccCccccCCCccccc-CCCc-EEEEECCCC----------
Confidence 5667777766677888888866 8888 9999999843 2111111111122332 3332 345555331
Q ss_pred CCCcccccCCCCCeEEEEEee---ccceec-------------cccCCEEEEeeccCCCCEEEEEeec--Cceeeccccc
Q 007532 386 PQPVDLVDVEMGKEYELVITT---YAGLYR-------------YRVGDILRVIGFHNSAPQFHFVRRK--NVLLSIESDK 447 (599)
Q Consensus 386 ~~~l~~~ev~~G~~YelviTt---~~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~--~~~l~~~GEk 447 (599)
.+|.+|+.|||+|+. ..|+|+ |+|||++++. ....+.|+||. +|+++++|++
T Consensus 340 ------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~----~dG~l~~~GR~d~~d~ik~~G~~ 409 (509)
T 3ivr_A 340 ------RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD----ADGYLFYAGRAPEKELIKTGGEN 409 (509)
T ss_dssp ------CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC----TTSCEEEEEEC------------
T ss_pred ------CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC----CCceEEEeCCCCcceeEEECCEE
Confidence 246899999999986 467887 9999999997 35689999999 9999999999
Q ss_pred cCHHHHHHHHHHH
Q 007532 448 TDEAELQNAIDNA 460 (599)
Q Consensus 448 ~~e~~v~~av~~a 460 (599)
+++.+||++|.+.
T Consensus 410 v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 410 VYPAEVEGALKQH 422 (509)
T ss_dssp -------------
T ss_pred ECHHHHHHHHHhC
Confidence 9999999999764
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.42 E-value=1.2e-11 Score=136.69 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=86.9
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccc-cccccCCC-CCCCCCCceeeecCceEEEEeeCCCCCCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSEC-YFGLNLNP-ICRPSEVSYTIMPNMAYFEFLPQEPSDSFGL 381 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg-~i~i~~~~-~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~ 381 (599)
++.+++||. ...++++++.+| ++++ +.||+||+ .+.+...+ .+.....+. ..|+. -++.++.+.
T Consensus 302 lr~~~~gGe~l~~~~~~~~~~~~g--~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~g------ 370 (529)
T 2v7b_A 302 IRICTSAGEALPREIGERFTAHFG--CEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPGY-EIELRDEAG------ 370 (529)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHHS--CCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTTC-EEEEECTTS------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhC--Ccee-eeEchhhcCceeeccccCCCccCCccc-CCCCC-EEEEECCCC------
Confidence 667777774 456677888775 7888 99999997 33322111 111112222 23332 355565321
Q ss_pred CCCCCCCcccccCCCCCeEEEEEee---ccceec-------------cccCCEEEEeeccCCCCEEEEEeecCceeeccc
Q 007532 382 TSSDPQPVDLVDVEMGKEYELVITT---YAGLYR-------------YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIES 445 (599)
Q Consensus 382 ~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~G 445 (599)
.+|.+|+.|||+|+. ..|+|+ |+|||++++.. ...+.|+||.+|+++++|
T Consensus 371 ----------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G 436 (529)
T 2v7b_A 371 ----------HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDMLKVSG 436 (529)
T ss_dssp ----------CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCBC---
T ss_pred ----------CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeEEECC
Confidence 246799999999986 467775 89999999873 568999999999999999
Q ss_pred cccCHHHHHHHHHH
Q 007532 446 DKTDEAELQNAIDN 459 (599)
Q Consensus 446 Ek~~e~~v~~av~~ 459 (599)
+++++.+||++|.+
T Consensus 437 ~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 437 QYVSPVEVEMVLVQ 450 (529)
T ss_dssp -CBCHHHHHHHHTT
T ss_pred EEECHHHHHHHHHh
Confidence 99999999999965
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.41 E-value=2.9e-11 Score=137.52 Aligned_cols=253 Identities=16% Similarity=0.112 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhC-CCCCccccccccccccccccCC-CC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSG-GKLPMACTMYASSECYFGLNLN-PI 351 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g-~~~~~~~~~Y~asEg~i~i~~~-~~ 351 (599)
.|..+..|.+...+. .... ++..++.+++||. ....+.+.+.+| .+++++ +.||.||+...+... +.
T Consensus 357 ~P~~~~~l~~~~~~~-----~~~~--~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~ 428 (652)
T 1pg4_A 357 APTAIRALMAEGDKA-----IEGT--DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPG 428 (652)
T ss_dssp CHHHHHHHHTTGGGG-----TTTC--CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTT
T ss_pred CHHHHHHHHhcCccc-----cccC--CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCC
Confidence 666666665433211 1111 2333677777774 345566766665 237888 999999984322111 11
Q ss_pred C---CCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEeec-----cceec-----------
Q 007532 352 C---RPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITTY-----AGLYR----------- 412 (599)
Q Consensus 352 ~---~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt~-----~GLyR----------- 412 (599)
. .+...+. .+|+.. ...++.+ ..+|..|+.|||+|+.. .|+|+
T Consensus 429 ~~~~~~~s~G~-p~~g~~-v~i~d~~----------------g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~ 490 (652)
T 1pg4_A 429 AIELKAGSATR-PFFGVQ-PALVDNE----------------GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS 490 (652)
T ss_dssp TCCBCTTCCBS-BCTTCC-EEEECTT----------------CCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS
T ss_pred CcCccCCcccc-CcCCCe-EEEECCC----------------CCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhh
Confidence 0 0111121 122221 2233321 12467899999999862 34442
Q ss_pred -----cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCCCCCc-e
Q 007532 413 -----YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPG-H 486 (599)
Q Consensus 413 -----Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~-h 486 (599)
|+|||++++.. ...+.|+||.+|+++++|++|.+.+||++|.+. .+ |.+-.|..-.....+ .
T Consensus 491 ~~~g~y~TGDlg~~d~----dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~ 558 (652)
T 1pg4_A 491 TFKNMYFSGDGARRDE----DGYYWITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAIKGQA 558 (652)
T ss_dssp SSTTSEEEEEEEEECT----TSCEEEEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETTTEEE
T ss_pred cCCCEEECCcEEEEcC----CCcEEEEecCCCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcCCCCeE
Confidence 99999999973 468999999999999999999999999999652 22 445554431111122 2
Q ss_pred EEEEEEEeecCCCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeC------CccHHHHHHHHHhcCCCCC
Q 007532 487 YVIYWELLIKDSANSPTNEVLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVR------NGTFEELMDYAISRGASIN 560 (599)
Q Consensus 487 Y~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~LN~~Y~~~R~~~g~l~p~~v~iv~------~gtF~~~~~~~~~~G~~~~ 560 (599)
-+.|+.+.. + ...+++..+++.+.+.+.| +.|.. |-.+.+|+ .|-..+-.=..+..+.. .
T Consensus 559 l~a~Vv~~~-~--~~~~~~~~~~l~~~l~~~l-~~~~~---------P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~-~ 624 (652)
T 1pg4_A 559 IYAYVTLNH-G--EEPSPELYAEVRNWVRKEI-GPLAT---------PDVLHWTDSLPKTRSGKIMRRILRKIAAGDT-S 624 (652)
T ss_dssp EEEEEEECT-T--CCCCHHHHHHHHHHHHHHT-CGGGC---------CSEEEECSCCCBCTTSCBCHHHHHHHHHTC---
T ss_pred EEEEEEECC-C--CCCCHHHHHHHHHHHHHhC-CCCcC---------CeEEEEcCCCCCCCCccchHHHHHHHHhCCC-C
Confidence 345666642 2 1233333444555555555 22222 33344433 34433321111122321 3
Q ss_pred CCCCCcccCCHhHHHHHhccc
Q 007532 561 QYKVPRCVNFTPIVELLDSRT 581 (599)
Q Consensus 561 Q~K~Pr~~~~~~~~~~L~~~~ 581 (599)
+.+.+--+.|++.++.+.+.+
T Consensus 625 ~~~~~~~l~~p~~~~~~~~~~ 645 (652)
T 1pg4_A 625 NLGDTSTLADPGVVEKLLEEK 645 (652)
T ss_dssp --------CCTTHHHHHHHHH
T ss_pred CCCCccccCCHHHHHHHHHHh
Confidence 566777788999999887644
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.41 E-value=2.4e-11 Score=136.05 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=87.5
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCC--CCCCCCceeeecCceEEEEeeCCCCCCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPI--CRPSEVSYTIMPNMAYFEFLPQEPSDSFGL 381 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~~~~~ 381 (599)
++.+++||. ...++++++.+| ++++ +.||+||+.+.+...+. ..+...+. ..|+. -.+.++++.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~g--~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~i~d~~g------ 392 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQTG--LDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASCY-DVQIIDDKG------ 392 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHHS--CCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-CEEEECTTS------
T ss_pred ceEEEEcCCcCCHHHHHHHHHHhC--Cchh-hccchhhcccceecCcccccCCCcccc-cCCCc-eEEEECCCC------
Confidence 556666663 355677777775 7888 99999998543221111 11112222 22322 244454321
Q ss_pred CCCCCCCcccccCCCCCeEEEEEe-----e---ccceec-------------cccCCEEEEeeccCCCCEEEEEeecCce
Q 007532 382 TSSDPQPVDLVDVEMGKEYELVIT-----T---YAGLYR-------------YRVGDILRVIGFHNSAPQFHFVRRKNVL 440 (599)
Q Consensus 382 ~~~~~~~l~~~ev~~G~~YelviT-----t---~~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~ 440 (599)
.+|.+|+.|||+|+ . ..|+|. |+|||++++.. ...+.|+||.+|+
T Consensus 393 ----------~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~GR~dd~ 458 (570)
T 3c5e_A 393 ----------NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFMGRADDI 458 (570)
T ss_dssp ----------CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEEEGGGC
T ss_pred ----------CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEEecCCCE
Confidence 24679999999997 2 356664 99999999873 4589999999999
Q ss_pred eeccccccCHHHHHHHHHH
Q 007532 441 LSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 441 l~~~GEk~~e~~v~~av~~ 459 (599)
++++|++|++.+||++|.+
T Consensus 459 Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 459 INSSGYRIGPSEVENALME 477 (570)
T ss_dssp EEETTEEECHHHHHHHHHT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999999965
No 21
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.41 E-value=9.9e-12 Score=138.22 Aligned_cols=154 Identities=18% Similarity=0.267 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHH----hC-CCCCccccccccccccccccC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYY----SG-GKLPMACTMYASSECYFGLNL 348 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~----~g-~~~~~~~~~Y~asEg~i~i~~ 348 (599)
.|.....|........ ...-++. ++.+++||. ...++++.+. ++ .+++++ +.||+||+...+..
T Consensus 275 ~P~~~~~l~~~~~~~~----~~~~~~~---lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~ 346 (549)
T 3g7s_A 275 VPPALNVLVNTLESSN----KTYDWSY---LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTT 346 (549)
T ss_dssp CHHHHHHHHHHHHHSC----CCCCCTT---CCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEE
T ss_pred CCHHHHHHHhhhhhhc----ccCCccc---eeEEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhc
Confidence 6777777666544321 1122344 667777774 3445666655 43 226777 89999998432211
Q ss_pred CCC---CCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---cccee-----------
Q 007532 349 NPI---CRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLY----------- 411 (599)
Q Consensus 349 ~~~---~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLy----------- 411 (599)
.+. ......+.. +|+. -++.+++++. .+|.+|+.|||+|+. ..|+|
T Consensus 347 ~~~~~~~~~~~~G~p-~~~~-~~~i~d~~~g---------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 409 (549)
T 3g7s_A 347 NPPLRLDKSTTQGVP-MSDI-ELKVISLEDG---------------RELGVGESGEIVIRGPNIFKGYWKREKENQECWW 409 (549)
T ss_dssp CCGGGGGGTTSCCEE-CTTC-EEEEECSSSC---------------CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEE
T ss_pred CCccccCcCCCcccc-CCCC-EEEEEeCCCC---------------cCCCCCCceEEEEECcchhhhhCCChhhhhhhhh
Confidence 111 111122332 3333 3555654332 246799999999985 35554
Q ss_pred -------ccccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 412 -------RYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 412 -------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
.|||||++++. ....+.|+||.+|+++++|++|.+.+||++|.+
T Consensus 410 ~~~~g~~~~~TGDl~~~~----~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 410 YDEKGRKFFRTGDVGFID----EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp ECTTCCEEEEEEEEEEEC----TTSCEEEEEEC------------CHHHHHHHTT
T ss_pred ccCCCCceEccCcEEEEc----CCceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 59999999997 356899999999999999999999999999965
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.41 E-value=1.2e-12 Score=144.36 Aligned_cols=129 Identities=13% Similarity=0.180 Sum_probs=83.2
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCC-------CCCCCceeeecCceEEEEeeCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPIC-------RPSEVSYTIMPNMAYFEFLPQEPS 376 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~-------~~~~~~~~l~~~~~ffEFip~~~~ 376 (599)
++.+++||. ...++++.+.+++ ++++ +.||+||+...+.....+ .....|. ..|+. -.+.++++
T Consensus 266 lr~~~~gG~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~d~~-- 339 (521)
T 3l8c_A 266 LTHFYFDGEELTVSTARKLFERFPS-AKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDS-PTYIIDED-- 339 (521)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTS-CEEEECTT--
T ss_pred ceEEEEecccCCHHHHHHHHHHCCC-ceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCCC-EEEEECCC--
Confidence 566777774 3556777777766 8898 999999985432110000 0001122 12322 23344422
Q ss_pred CCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec-----------------cccCCEEEEeeccCCCCEEEEEee
Q 007532 377 DSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR-----------------YRVGDILRVIGFHNSAPQFHFVRR 436 (599)
Q Consensus 377 ~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR-----------------Yr~GDvV~v~gf~~~~P~i~f~gR 436 (599)
..+|.+|+.|||+|+. ..|+|+ |+|||++++.. ...+.|+||
T Consensus 340 --------------g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG~l~~~GR 401 (521)
T 3l8c_A 340 --------------GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DNILLYGGR 401 (521)
T ss_dssp --------------SCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SSCEEEEEE
T ss_pred --------------cCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CCeEEEeCc
Confidence 1256899999999986 366664 99999999973 467999999
Q ss_pred cCceeeccccccCHHHHHHHHHH
Q 007532 437 KNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 437 ~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
.+|+++++|+++++.+||++|.+
T Consensus 402 ~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 402 LDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp GGGBCC-----CBHHHHHHHHHT
T ss_pred ccceEeECCEEeCHHHHHHHHHc
Confidence 99999999999999999999965
No 23
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.40 E-value=4e-12 Score=142.18 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=53.7
Q ss_pred cCCCCCeEEEEEee---cccee----------------------ccccCCEEEEeeccCCCCEEEEEeecCceeeccccc
Q 007532 393 DVEMGKEYELVITT---YAGLY----------------------RYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDK 447 (599)
Q Consensus 393 ev~~G~~YelviTt---~~GLy----------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk 447 (599)
+|.+|+.|||+|+. ..|+| .|+|||++++.. ..+.|+||.+|+++++|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----G~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----NELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----TEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----CEEEEEcCccceEEECCEe
Confidence 57899999999986 35554 599999998872 4699999999999999999
Q ss_pred cCHHHHHHHHHH
Q 007532 448 TDEAELQNAIDN 459 (599)
Q Consensus 448 ~~e~~v~~av~~ 459 (599)
|++.+||++|..
T Consensus 468 v~p~eIE~~l~~ 479 (590)
T 3kxw_A 468 HYPQDIEFSLMH 479 (590)
T ss_dssp THHHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 999999999955
No 24
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.39 E-value=1.5e-11 Score=135.42 Aligned_cols=155 Identities=14% Similarity=0.218 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCC--
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPI-- 351 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~-- 351 (599)
.|.....|.+...... .....+++ ++.+++||. ....+++++.++ ++++ +.||+||+.+.....+.
T Consensus 250 ~P~~~~~l~~~~~~~~---~~~~~l~~---lr~i~~gg~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~~~~ 320 (505)
T 3nyq_A 250 VPTMYHRIAETLPADP---ELAKALAG---ARLLVSGSAALPVHDHERIAAATG--RRVI-ERYGMTETLMNTSVRADGE 320 (505)
T ss_dssp CHHHHHHHHHHGGGCH---HHHHHHHH---CSEEEECSSCCCHHHHHHHHHHHS--CCCE-EEEEETTTEEEEECCTTSC
T ss_pred hHHHHHHHHHhhhcCc---hhhccccc---ceEEEECCCCCCHHHHHHHHHhcC--Ceee-cccchhhcccccccCCCCC
Confidence 5666666555443220 11122223 567777774 345577777775 7888 99999998553322111
Q ss_pred CCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec--------------cc
Q 007532 352 CRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR--------------YR 414 (599)
Q Consensus 352 ~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR--------------Yr 414 (599)
..+...+. .+|+. -++.++++.. .+. .+..|+.|||+|+. ..|+|. ||
T Consensus 321 ~~~~~vG~-p~~~~-~~~i~d~~g~-----------~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~ 385 (505)
T 3nyq_A 321 PRAGTVGV-PLPGV-ELRLVEEDGT-----------PIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFR 385 (505)
T ss_dssp CCTTCCCE-ECTTC-EEEEC----------------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEE
T ss_pred CCCCCccc-CCCCC-EEEEECCCCC-----------Ccc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCc
Confidence 11111222 22332 2445543211 111 12458999999985 366664 99
Q ss_pred cCCEEEEeeccCCCCEEEEEeec-CceeeccccccCHHHHHHHHHH
Q 007532 415 VGDILRVIGFHNSAPQFHFVRRK-NVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 415 ~GDvV~v~gf~~~~P~i~f~gR~-~~~l~~~GEk~~e~~v~~av~~ 459 (599)
|||++++.. ...+.|+||. +++++++|+++.+.+||++|.+
T Consensus 386 TGDl~~~~~----dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 386 TGDMAVRDP----DGYVRIVGRKATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp EEEEEEECT----TSCEEEEEESSCCCEEETTEEECHHHHHHHHTT
T ss_pred cCCeEEECC----CccEEEeCCccCceEEeCCEEECHHHHHHHHHH
Confidence 999999973 4689999998 5999999999999999999964
No 25
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.39 E-value=3e-12 Score=142.63 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=65.5
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccC---CCCCCCCCCceeeecCceEEEEeeCCCCCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNL---NPICRPSEVSYTIMPNMAYFEFLPQEPSDSFG 380 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~---~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~ 380 (599)
++.+++||. ....+.+++.++ ++++ +.||+||+.+.... .+.......+. ..++. -...++++..
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~~~---- 366 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDR--VALV-NVYGPTEVTIGCSAGRILPDSDTRCIGH-PLGDS-VAHVLAPGSN---- 366 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSS--CEEE-EEECCGGGCSCSEEEECCTTSCTTEEEE-ECTTC-EEEEECTTSS----
T ss_pred eEEEEEecCCCCHHHHHHHhhCCC--cEEE-EeeccchheeeeeeeeecCCCCCccccc-cCCCC-eEEEEeCCCC----
Confidence 566777774 234455555444 7888 99999997442211 11111111111 12222 3444443322
Q ss_pred CCCCCCCCcccccCCCCCeEEEEEee---cccee---------------ccccCCEEEEeeccCCCCEEEEEeecCceee
Q 007532 381 LTSSDPQPVDLVDVEMGKEYELVITT---YAGLY---------------RYRVGDILRVIGFHNSAPQFHFVRRKNVLLS 442 (599)
Q Consensus 381 ~~~~~~~~l~~~ev~~G~~YelviTt---~~GLy---------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~ 442 (599)
.+|.+|+.|||+|+. ..|+| -|+|||++++.. ...+.|+||.+|+++
T Consensus 367 -----------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~dd~Ik 431 (562)
T 3ite_A 367 -----------EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGRKDEQVK 431 (562)
T ss_dssp -----------CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEEC-----
T ss_pred -----------CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEccccCEEe
Confidence 246899999999975 36666 399999999973 568999999999999
Q ss_pred ccccccCHHHHHHHHHHH
Q 007532 443 IESDKTDEAELQNAIDNA 460 (599)
Q Consensus 443 ~~GEk~~e~~v~~av~~a 460 (599)
++|++|++.+||++|.+.
T Consensus 432 ~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 432 VRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp ------------------
T ss_pred ECcEEECHHHHHHHHHhc
Confidence 999999999999999764
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.39 E-value=1.8e-11 Score=136.18 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=54.8
Q ss_pred cCCCCCeEEEEEee---ccceec-------------cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHH
Q 007532 393 DVEMGKEYELVITT---YAGLYR-------------YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNA 456 (599)
Q Consensus 393 ev~~G~~YelviTt---~~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~a 456 (599)
+|.+|+.|||+|+. ..|+|+ |+|||++++. ...+.|+||.+|+++++|+++++.+||++
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~-----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLL-----DGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEE-----TTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEEE-----CCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 46789999999985 367776 9999999883 36899999999999999999999999999
Q ss_pred HHH
Q 007532 457 IDN 459 (599)
Q Consensus 457 v~~ 459 (599)
|.+
T Consensus 480 l~~ 482 (576)
T 3gqw_A 480 AEQ 482 (576)
T ss_dssp HTT
T ss_pred HHh
Confidence 965
No 27
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.39 E-value=1.1e-12 Score=145.95 Aligned_cols=151 Identities=11% Similarity=0.114 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCCC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICR 353 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~ 353 (599)
.|..+..|.+..... ..-.+. ++.+++||. ...++++++.++ ++++ +.||+||+.+.+.......
T Consensus 288 ~P~~~~~l~~~~~~~------~~~~~~---lr~i~~gG~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~~~~ 355 (544)
T 3o83_A 288 VPSAVIMWLEKAAQY------KDQIQS---LKLLQVGGASFPESLARQVPEVLN--CKLQ-QVFGMAEGLVNYTRLDDSD 355 (544)
T ss_dssp CHHHHHHHHHHHTTT------HHHHTT---CCEEEEESSCCCHHHHTHHHHHHC--SEEE-EEEECTTSCEEECCTTSCH
T ss_pred chHHHHHHHhchhhc------cccCCc---ceEEEEcCCCCCHHHHHHHHHHhC--CcEE-eeeccccccceeecCCCch
Confidence 677777766554332 112234 566777774 355677777775 7888 9999999865432111000
Q ss_pred ---CCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec--------------c
Q 007532 354 ---PSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR--------------Y 413 (599)
Q Consensus 354 ---~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR--------------Y 413 (599)
....+..+.++. -++.++.+. .+|.+|+.|||+|+. ..|+|+ |
T Consensus 356 ~~~~~~~G~p~~~~~-~~~i~d~~~----------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~ 418 (544)
T 3o83_A 356 EQIFTTQGRPISSDD-EIKIVDEQY----------------REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYY 418 (544)
T ss_dssp HHHHHCCCEESCTTC-EEEEECTTS----------------CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCE
T ss_pred hhccCCCceecCCCc-EEEEECCCC----------------CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCe
Confidence 001233222322 344454221 246899999999986 356664 9
Q ss_pred ccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHH
Q 007532 414 RVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNA 460 (599)
Q Consensus 414 r~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a 460 (599)
+|||++++.. ...+.|+||.+|+++++|+++++.+||++|.+.
T Consensus 419 ~TGDlg~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 419 YSGDLVQRTP----DGNLRVVGRIKDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp EEEEEEEECT----TSCEEEEEEEC----------------------
T ss_pred EcCCEEEEcC----CCCEEEEeecCCEEEeCCEEECHHHHHHHHHhC
Confidence 9999999973 568999999999999999999999999999764
No 28
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.37 E-value=4.6e-12 Score=143.06 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCCC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICR 353 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~ 353 (599)
.|.....|.+..... ..+.-.+. ++.+++||. ....+++...++ ++++ +.||.||+.+.........
T Consensus 281 ~P~~~~~l~~~~~~~----~~~~~l~~---lr~i~~gGe~l~~~~~~~~~~~~~--~~~~-~~YG~tE~~~~~~~~~~~~ 350 (617)
T 3rg2_A 281 VPPAVSLWLQALIEG----ESRAQLAS---LKLLQVGGARLSATLAARIPAEIG--CQLQ-QVFGMAEGLVNYTRLDDSA 350 (617)
T ss_dssp CHHHHHHHHHHHHTT----CCTTTTTT---CCEEEEESSCCCHHHHHHHHHHTC--SEEE-EEEEETTEEEEECCTTSCH
T ss_pred chHHHHHHHHhhhcc----cccccCCC---ccEEEEcCCcCCHHHHHHHHHHhC--CcEE-EEeccCcceeecccCCCcc
Confidence 677677666554332 11122344 667777774 355667777775 7888 9999999865432111000
Q ss_pred ---CCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec--------------c
Q 007532 354 ---PSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR--------------Y 413 (599)
Q Consensus 354 ---~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR--------------Y 413 (599)
....+..+.++. -...++.+ ...|.+|+.|||+|+. ..|+|. |
T Consensus 351 ~~~~~~~G~p~~~~~-~~~i~d~~----------------~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~y 413 (617)
T 3rg2_A 351 EKIIHTQGYPMCPDD-EVWVADAE----------------GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 413 (617)
T ss_dssp HHHHHCCCEESCTTC-EEEEECTT----------------SCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCE
T ss_pred cccccCCCccCCCCc-eEEEECCC----------------CCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCce
Confidence 001222222222 23334321 1246899999999975 366664 9
Q ss_pred ccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 414 RVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 414 r~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
||||++++.. ...++|+||.+++++++|+++.+.+||++|.+
T Consensus 414 rTGDl~~~~~----dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 414 CSGDLISIDP----EGYITVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp EEEEEEEECT----TSCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred ecCceEEEcC----CceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 9999999973 46899999999999999999999999999965
No 29
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.36 E-value=1.7e-11 Score=135.49 Aligned_cols=147 Identities=18% Similarity=0.186 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccC----C
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNL----N 349 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~----~ 349 (599)
.|.....|.+..... ..-.|+ ++.+++||. ....+.++.. + ++++ +.||+||+...... +
T Consensus 265 ~P~~~~~l~~~~~~~------~~~~~~---lr~i~~gGe~l~~~~~~~~~~~--~-~~~~-~~YG~TE~~~~~~~~~~~~ 331 (517)
T 3r44_A 265 VPAILNFMRQVPEFA------ELDAPD---FRYFITGGAPMPEALIKIYAAK--N-IEVV-QGYALTESCGGGTLLLSED 331 (517)
T ss_dssp CHHHHHHHHHSHHHH------HCCCTT---CCEEEECSSCCCHHHHHHHHHT--T-CEEE-EEEECGGGTTCEEEECGGG
T ss_pred HHHHHHHHHhCcccc------cCCCCc---ccEEEECCCCCCHHHHHHHHhc--C-CcEE-EeecccccccceeecCCcc
Confidence 676666665432211 112344 667788884 3444555554 3 7888 99999998442211 1
Q ss_pred CCCCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec-------------c
Q 007532 350 PICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR-------------Y 413 (599)
Q Consensus 350 ~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR-------------Y 413 (599)
........+.. .++. -.+.++.+. ..+..| .|||+|+. ..|+|+ |
T Consensus 332 ~~~~~~~~G~~-~~~~-~~~i~d~~~----------------~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~ 392 (517)
T 3r44_A 332 ALRKAGSAGRA-TMFT-DVAVRGDDG----------------VIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWF 392 (517)
T ss_dssp TTTTTTCCBEE-CTTE-EEEEECTTS----------------CEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEE
T ss_pred ccccCCCCCcC-CCCe-EEEEECCCC----------------CCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCE
Confidence 01111122221 2221 233333211 124567 89999986 467776 9
Q ss_pred ccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 414 RVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 414 r~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
||||++++.. ...+.|+||.+|+++++|+++.+.+||++|.+
T Consensus 393 ~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 393 RTGDIGEIDD----EGYLYIKDRLKDMIISGGENVYPAEIESVIIG 434 (517)
T ss_dssp EEEEEEEECT----TSCEEEEECGGGCEEETTEEECHHHHHHHHTT
T ss_pred ecceeEEEcC----CeeEEEecCCcCEEEECCEEECHHHHHHHHHh
Confidence 9999999973 46899999999999999999999999999964
No 30
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.34 E-value=4.7e-12 Score=141.55 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccc--c-CCC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGL--N-LNP 350 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i--~-~~~ 350 (599)
.|..+..|.+...+ -.+. ++.+++||. .....++.+.+++ ++++ +.||+||+.... + ...
T Consensus 310 ~P~~~~~l~~~~~~---------~~~~---lr~~~~gG~~l~~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~ 375 (570)
T 4gr5_A 310 SASLFNFLVDEVPE---------AFEG---VRYAITGGEPASVPHVAKARRDHPA-LRLG-NGYGPAESMGFTTHHAVVA 375 (570)
T ss_dssp EHHHHHHHHHHCGG---------GGTT---CSEEEEESSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGCSCSEEEECCG
T ss_pred cHHHHHHHHhhchh---------hCCC---ceEEEEecccCCHHHHHHHHHhCCC-cEEE-Eeechhhheeeeeeeeecc
Confidence 67777776654322 2344 566777774 2455667677766 8888 999999974311 1 000
Q ss_pred CCC---CCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec------------
Q 007532 351 ICR---PSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR------------ 412 (599)
Q Consensus 351 ~~~---~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR------------ 412 (599)
... ....+.. +|+. -...++.+ ..+|.+|+.|||+|+. ..|+|+
T Consensus 376 ~~~~~~~~~iG~p-~~~~-~v~i~d~~----------------~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 437 (570)
T 4gr5_A 376 GDLSGTALPIGVP-LAGK-RAYVLDDD----------------LKPAANGALGELYVAGAGLAHGYVSRPALTAERFVAD 437 (570)
T ss_dssp GGTTSSSCCCBEE-CTTE-EEEEECTT----------------SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEEC
T ss_pred cccCCCcccccee-eCCC-EEEEECCC----------------CCCCCCCCcEEEEEeecccchhcCCCchhhhcccccC
Confidence 000 0012222 2322 23344322 1246799999999975 366664
Q ss_pred ----------cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHH
Q 007532 413 ----------YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNA 460 (599)
Q Consensus 413 ----------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a 460 (599)
|||||++++.. ...+.|+||.+|+++++|+++++.+||++|.+.
T Consensus 438 ~~~~~~~~~w~~TGDlg~~d~----dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 438 PFAGPGGERMYRTGDLARRRA----DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp TTCCSSCCEEEEEEEEEEECT----TSCEEEEEC------------------------
T ss_pred CCCCCCCCEEEeCCCeEEECC----CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 99999999973 568999999999999999999999999999763
No 31
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.33 E-value=6e-11 Score=135.28 Aligned_cols=229 Identities=15% Similarity=0.162 Sum_probs=120.4
Q ss_pred ceeEEEEecch---hhhHHHHHHHhC-CCCCccccccccccccc--cccCC-CC--CCCCCCceeeecCceEEEEeeCCC
Q 007532 305 KYLDVIVTGAM---AQYIPTLDYYSG-GKLPMACTMYASSECYF--GLNLN-PI--CRPSEVSYTIMPNMAYFEFLPQEP 375 (599)
Q Consensus 305 ~~l~~~~~g~~---~~y~~~l~~~~g-~~~~~~~~~Y~asEg~i--~i~~~-~~--~~~~~~~~~l~~~~~ffEFip~~~ 375 (599)
..++++++||. ...++.+.+.+| .+++++ +.||.||+.. ..+.. .. ..+...+.. +|+.. .+.+++++
T Consensus 384 ~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p-~~g~~-v~i~d~~~ 460 (663)
T 1ry2_A 384 KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASFP-FFGID-AVVLDPNT 460 (663)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCEE-CTTCC-EEEECSSS
T ss_pred CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCccccC-cCCCe-EEEEcCCC
Confidence 34778888884 345566766665 237888 9999999743 22211 00 011122222 23222 33444312
Q ss_pred CCCCCCCCCCCCCcccccCCC-CCeEEEEEeec-----cceec----------------cccCCEEEEeeccCCCCEEEE
Q 007532 376 SDSFGLTSSDPQPVDLVDVEM-GKEYELVITTY-----AGLYR----------------YRVGDILRVIGFHNSAPQFHF 433 (599)
Q Consensus 376 ~~~~~~~~~~~~~l~~~ev~~-G~~YelviTt~-----~GLyR----------------Yr~GDvV~v~gf~~~~P~i~f 433 (599)
. .+|.. |+.|||+|+.. .|+|+ |+|||++++.. ...+.|
T Consensus 461 g---------------~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~i 521 (663)
T 1ry2_A 461 G---------------EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----DGYIWI 521 (663)
T ss_dssp T---------------TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----TCCEEE
T ss_pred C---------------CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----CCCEEE
Confidence 1 13445 89999999862 34442 99999999973 467999
Q ss_pred EeecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCCCCCc-eEEEEEEEeecCCCCC---C-Ch---H
Q 007532 434 VRRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPG-HYVIYWELLIKDSANS---P-TN---E 505 (599)
Q Consensus 434 ~gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~-hY~l~~E~e~~~~~~~---~-~~---~ 505 (599)
+||.+|+|++.|++|.+.+||++|.+. . .|.+.+|........+ .-+.|+.+.. +. . . +. +
T Consensus 522 ~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p--~V~ea~Vvg~~~~~~g~~~~a~Vv~~~-~~--~~~~~~~~~~~~ 590 (663)
T 1ry2_A 522 LGRVDDVVNVSGHRLSTAEIEAAIIED------P--IVAECAVVGFNDDLTGQAVAAFVVLKN-KS--SWSTATDDELQD 590 (663)
T ss_dssp CSCTTSCBCSSSCCBCHHHHHHHHHSS------T--TEEEEEEECCCCCTTSCCCEEEEEEC---------------CCS
T ss_pred EeecCCEEEECCEEcCHHHHHHHHHhC------C--CcceEEEEEEecCCCCeEEEEEEEEcC-CC--ccccccchhHHH
Confidence 999999999999999999999999641 2 2556655432111112 2345666542 11 1 1 11 1
Q ss_pred HHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeC------CccHHHHHHHHHhcCCCCC--CCCCCcccCCHhHHHHH
Q 007532 506 VLNQCCLAMEECLNSVYRQGRVADNSIGPLEIRVVR------NGTFEELMDYAISRGASIN--QYKVPRCVNFTPIVELL 577 (599)
Q Consensus 506 ~l~~~~~~ld~~LN~~Y~~~R~~~g~l~p~~v~iv~------~gtF~~~~~~~~~~G~~~~--Q~K~Pr~~~~~~~~~~L 577 (599)
..+++.+.+.+.| +.| .-|-+|.+|+ .|-..+- .+.+=.... +.+.+-.+.|++.++.+
T Consensus 591 l~~~l~~~l~~~L-~~~---------~~P~~i~~v~~lP~T~sGKi~R~---~L~~~~~~~~~~~~~~~~l~~p~~~~~~ 657 (663)
T 1ry2_A 591 IKKHLVFTVRKDI-GPF---------AAPKLIILVDDLPKTRSGKIMRR---ILRKILAGESDQLGDVSTLSNPGIVRHL 657 (663)
T ss_dssp HHHHHHHHHHHHT-CTT---------TSCSEEEECSCCCBCTTSCBCHH---HHHHSCC-------------CCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCC---------cCCeEEEEcCCCCCCCccCchHH---HHHHHHcCCCCCCCCcccccCHHHHHHH
Confidence 2333344444444 111 1244455543 3443332 222111122 67888889999999998
Q ss_pred hc
Q 007532 578 DS 579 (599)
Q Consensus 578 ~~ 579 (599)
.+
T Consensus 658 ~~ 659 (663)
T 1ry2_A 658 ID 659 (663)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 32
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.32 E-value=2.4e-11 Score=144.28 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccc--cccC---
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYF--GLNL--- 348 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i--~i~~--- 348 (599)
.|..+..|.+...... .-.+. ++.+++||. ....+.+++.+++ ++++ +.||.||+.. +.+.
T Consensus 325 ~P~~~~~l~~~~~~~~------~~l~~---lr~~~~gg~~l~~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~ 393 (979)
T 3tsy_A 325 VPPIVLAIAKSSETEK------YDLSS---IRVVKSGAAPLGKELEDAVNAKFPN-AKLG-QGYGMTEAGPVLAMSLGFA 393 (979)
T ss_dssp CHHHHHHHHHCGGGGT------SCCTT---CCEEEESSCCCCSSHHHHHHHHCTT-CEEE-ECEECGGGCSEEEECGGGS
T ss_pred HHHHHHHHHhCccccC------CCccc---eEEEEEcCCCCCHHHHHHHHHHCCC-CeEE-eeechhhhhHHHHhCCCCC
Confidence 6777777665433221 11234 677888884 3566788888866 8888 9999999853 2211
Q ss_pred -CCC-CCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec-----------
Q 007532 349 -NPI-CRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR----------- 412 (599)
Q Consensus 349 -~~~-~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR----------- 412 (599)
.+. ......+. .+|+. -++.+++++. .+|.+|+.|||+|+. ..|+|+
T Consensus 394 ~~~~~~~~~~~G~-p~~~~-~~~i~d~~~~---------------~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~ 456 (979)
T 3tsy_A 394 KEPFPVKSGACGT-VVRNA-EMKIVDPDTG---------------DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDK 456 (979)
T ss_dssp SSCCCCCTTCCCE-ECSSC-EEEEECTTSC---------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred CCccccCCCCcCc-ccCCc-EEEEEeCCCC---------------CCCCCCCccEEEEECCCccccccCChhhhhhhccC
Confidence 110 00111122 23333 3455654432 246789999999985 366765
Q ss_pred ---cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHH
Q 007532 413 ---YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNA 460 (599)
Q Consensus 413 ---Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a 460 (599)
|||||++++.. ...+.|+||.+|+++++|++|.+.+||++|.+.
T Consensus 457 ~g~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 457 DGWLHTGDIGLIDD----DDELFIVDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp TSCEEEEEEEEECT----TSCEEEEEESCC---------------------
T ss_pred CCcEEcCCEEEEcC----CceEEEecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 99999999973 468999999999999999999999999999763
No 33
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.29 E-value=1.8e-10 Score=128.75 Aligned_cols=129 Identities=13% Similarity=0.230 Sum_probs=83.8
Q ss_pred eEEEEecchhhhHHHHHHHhCCCCCcccccccccccccccc--C-CCCC--CCCCCceeeecCceEEEEeeCCCCCCCCC
Q 007532 307 LDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLN--L-NPIC--RPSEVSYTIMPNMAYFEFLPQEPSDSFGL 381 (599)
Q Consensus 307 l~~~~~g~~~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~--~-~~~~--~~~~~~~~l~~~~~ffEFip~~~~~~~~~ 381 (599)
++.+++||.....+.++.+... ++++ +.||+||+.+... . .... .....|.. +|+. -.+.++++.
T Consensus 295 lr~~~~gG~~l~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p-~~~~-~v~i~d~~~------ 364 (563)
T 1amu_A 295 IQTLITAGSATSPSLVNKWKEK-VTYI-NAYGPTETTICATTWVATKETIGHSVPIGAP-IQNT-QIYIVDENL------ 364 (563)
T ss_dssp CSEEEEESSCCCHHHHHHHTTT-SEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEE-CTTE-EEEEECTTS------
T ss_pred ccEEEEEEecCCHHHHHHHHhC-CeEE-EEECcCHHhHhheeeecccccCCCCCcccce-eCCC-EEEEECCCc------
Confidence 5566777753222334443334 7788 9999999843211 1 1100 00112322 2332 234444221
Q ss_pred CCCCCCCcccccCCCCCeEEEEEee---cccee--------------------ccccCCEEEEeeccCCCCEEEEEeecC
Q 007532 382 TSSDPQPVDLVDVEMGKEYELVITT---YAGLY--------------------RYRVGDILRVIGFHNSAPQFHFVRRKN 438 (599)
Q Consensus 382 ~~~~~~~l~~~ev~~G~~YelviTt---~~GLy--------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~ 438 (599)
.++.+|+.|||+|+. ..|+| .|+|||++++.. ...+.|+||.+
T Consensus 365 ----------~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~~ 430 (563)
T 1amu_A 365 ----------QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRID 430 (563)
T ss_dssp ----------CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEGG
T ss_pred ----------CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEecccc
Confidence 246789999999986 35655 599999999873 46799999999
Q ss_pred ceeeccccccCHHHHHHHHHH
Q 007532 439 VLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 439 ~~l~~~GEk~~e~~v~~av~~ 459 (599)
|+++++|+++++.+||++|.+
T Consensus 431 d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 431 NQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp GEEEETTEEEEHHHHHHHHTT
T ss_pred CEEEECCEEeCHHHHHHHHHh
Confidence 999999999999999999965
No 34
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.29 E-value=2.4e-10 Score=125.30 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccc-cccCCCC-
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYF-GLNLNPI- 351 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i-~i~~~~~- 351 (599)
.|..+..|.+..... .. + ++.+++||. ...++.+++ + + ++++ +.||+||+.. .....+.
T Consensus 258 ~P~~~~~l~~~~~~~-------~~--~---lr~i~~gG~~l~~~~~~~~~~-~-~-~~~~-~~YG~TE~~~~~~~~~~~~ 321 (501)
T 3ipl_A 258 VPQTLNWLMQQGLHE-------PY--N---LQKILLGGAKLSATMIETALQ-Y-N-LPIY-NSFGMTETCSQFLTATPEM 321 (501)
T ss_dssp CHHHHHHHHHHTCCS-------CT--T---CCEEEECSSCCCHHHHHHHHH-T-T-CCEE-EEEEEGGGTEEEEEECHHH
T ss_pred hHHHHHHHHhcCCCC-------cC--c---ccEEEEeCCCCCHHHHHHHHH-h-C-CCEe-ccccccccccceeecCccc
Confidence 777777776654321 11 3 567777774 344455555 3 3 7888 9999999743 2111110
Q ss_pred --CCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec------------cc
Q 007532 352 --CRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR------------YR 414 (599)
Q Consensus 352 --~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR------------Yr 414 (599)
..+...+.. .|+. -.+.++ ..+|+.|||+|+. ..|+|+ |+
T Consensus 322 ~~~~~~~~G~p-~~~~-~~~i~d---------------------~~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~ 378 (501)
T 3ipl_A 322 LHARPDTVGMP-SANV-DVKIKN---------------------PNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFN 378 (501)
T ss_dssp HHHCTTCCBEE-CTTC-EEEEES---------------------CCSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEE
T ss_pred cccCCCCCCCC-CCCc-EEEEec---------------------CCCCCccEEEEeccchhhhhCcChhhcchhcCCcee
Confidence 001111221 1111 111221 1367789999975 366665 99
Q ss_pred cCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 415 VGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 415 ~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
|||++++. ....+.|+||.+|+++++|+++++.+||++|.+
T Consensus 379 TGDl~~~~----~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 379 TGDIAEID----HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp EEEEEEEC----TTSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred cCCEEEEc----CCCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 99999997 356899999999999999999999999999864
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.28 E-value=3.7e-11 Score=136.03 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecchh---hhHHHHHHHhCCCCCcccccccccccccccc---CCC
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAMA---QYIPTLDYYSGGKLPMACTMYASSECYFGLN---LNP 350 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~---~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~---~~~ 350 (599)
.|..+..|..... .-.+. ++.+++||.. ....++.+.+++ ++++ +.||.||+.+... ..+
T Consensus 260 ~Ps~~~~l~~~~~---------~~l~~---lr~v~~gGe~l~~~~~~~~~~~~~~-~~l~-n~YG~TE~~~~~~~~~~~~ 325 (620)
T 4dg8_A 260 TASLFNTLVDLDP---------DCLGG---LRQLLTGGDILSVPHVRRALLRHPR-LHLV-NGYGPTENTTFTCCHVVTD 325 (620)
T ss_dssp EHHHHHHHHHHCG---------GGGTT---CSEEEEESSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGCSCSEEEECCT
T ss_pred cHHHHHHHHhcCh---------hhCCC---ccEEEEEeCcCCHHHHHHHHHhCCC-eEEE-eeEchhhhhhheEEEeccc
Confidence 6666666654321 12344 5667777742 334455455555 8898 9999999854221 111
Q ss_pred C---CCCCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCCCCeEEEEEee---ccceec------------
Q 007532 351 I---CRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLYR------------ 412 (599)
Q Consensus 351 ~---~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLyR------------ 412 (599)
. ......|. .+|+. -...++.+.. . -+.+|+.|||+|.. ..|+|+
T Consensus 326 ~~~~~~~~~iG~-p~~~~-~~~i~d~~~~-----------~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~ 388 (620)
T 4dg8_A 326 DDLEEDDIPIGK-AIAGT-AVLLLDEHGQ-----------E----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVEL 388 (620)
T ss_dssp GGGGSSSCCCBE-ECTTE-EEEEECTTSC-----------B----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEE
T ss_pred cccCCCCCCcee-cccCc-EEEEECccCC-----------C----CCCCCCceEEEEeccccccccCCChhhhhhhhccC
Confidence 0 00011222 12322 2344443221 1 14689999999964 355543
Q ss_pred ---------cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHH
Q 007532 413 ---------YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 413 ---------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
|||||++++. ....++|+||.+++++++|+++.+.+||++|.+
T Consensus 389 p~~~~~~~~yrTGDl~~~~----~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 389 PYRGRLLRAYRTGDRARYD----EQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp EETTEEEEEEEEEEEEEEC----TTSCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred CCCCCCceEEeCCCEEEEC----CCCeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 9999999997 356899999999999999999999999999975
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.23 E-value=3.1e-11 Score=127.36 Aligned_cols=118 Identities=14% Similarity=0.226 Sum_probs=76.6
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCCCCCCCceeeecCceEEEEeeCCCCCCCCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPSDSFGLTS 383 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~ 383 (599)
++.+++||. ....+++++. + ++++ +.||+||+...+...+...+.. .... ++
T Consensus 150 lr~v~~gG~~l~~~~~~~~~~~--~-~~~~-~~YG~TEt~~~~~~~~~~~~~~-------g~~~---~~----------- 204 (358)
T 4gs5_A 150 LGKVLLGGAPVNHALAMQISDL--A-MPVY-QSYGMTETVSHVALKALNGPEA-------SELY---VF----------- 204 (358)
T ss_dssp GCSEEECSSCCCHHHHHHHHTC--S-SCEE-EEEECGGGSSEEEEEECSSTTC-------CSCE---EE-----------
T ss_pred ceEEEEcccCCCchheeccccc--C-ceEE-eccccccccceeeccccccccc-------ceee---cc-----------
Confidence 556677774 2344555543 3 7888 9999999754332221111100 0000 11
Q ss_pred CCCCCcccccCCCCCeEEEEEeec---cceeccccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHH
Q 007532 384 SDPQPVDLVDVEMGKEYELVITTY---AGLYRYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNA 460 (599)
Q Consensus 384 ~~~~~l~~~ev~~G~~YelviTt~---~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a 460 (599)
.+..++..++.+|+++... .|. |+|||++++.. . .+.|+||.+|+++++|++|++.+||++|...
T Consensus 205 -----~pgv~~~~~~~Gel~~~g~~~~~g~--~~TGDlg~~d~---~--g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 205 -----LPGIQYGVDERGCLHISGAVTNGQT--VQTNDLVEIHG---N--AFQWIGRADNVINSGGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp -----CTTCEEEECTTSEEEEESGGGTTCC--EEEEEEEEECS---S--EEEEEEEGGGEEEETTEEEEHHHHHHHHHHH
T ss_pred -----CCCeEEEecCcCceEEecccccCcc--eecCCcccccc---C--ceEEcccccCeEEECCEEECHHHHHHHHHHh
Confidence 1122445677889998742 333 78999999984 2 3789999999999999999999999998764
Q ss_pred H
Q 007532 461 S 461 (599)
Q Consensus 461 ~ 461 (599)
.
T Consensus 273 ~ 273 (358)
T 4gs5_A 273 F 273 (358)
T ss_dssp H
T ss_pred c
Confidence 3
No 37
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.19 E-value=1.1e-10 Score=129.69 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHhccccccccccccCCCCceeEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCCC-
Q 007532 277 NTELAEFIRMECSKENWERIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPIC- 352 (599)
Q Consensus 277 ~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~~- 352 (599)
.|.....|.+.....+ .-.+. ++.+++||. ...++++ +.+| ++++ +.||+||+...+......
T Consensus 274 ~P~~~~~l~~~~~~~~------~~l~~---lr~i~~gG~~l~~~~~~~~-~~~g--~~~~-~~YG~TE~~~~~~~~~~~~ 340 (541)
T 1v25_A 274 VPTVWLALADYLESTG------HRLKT---LRRLVVGGSAAPRSLIARF-ERMG--VEVR-QGYGLTETSPVVVQNFVKS 340 (541)
T ss_dssp CHHHHHHHHHHHHHHT------CCCSS---CCEEEECSSCCCHHHHHHH-HHTT--CEEE-EEEECGGGSSEEEECCCCG
T ss_pred chHHHHHHHhhhhccC------Ccchh---ccEEEECCCCCCHHHHHHH-HHhC--Ccee-ecccccccccceecccccc
Confidence 6776776665443221 11234 667777774 3445666 4454 7888 999999984322111100
Q ss_pred ------C------CCCCceeeecCceEEEEeeCCCCCCCCCCCCCCCCcccccCCC--CCeEEEEEee---ccceec---
Q 007532 353 ------R------PSEVSYTIMPNMAYFEFLPQEPSDSFGLTSSDPQPVDLVDVEM--GKEYELVITT---YAGLYR--- 412 (599)
Q Consensus 353 ------~------~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~l~~~ev~~--G~~YelviTt---~~GLyR--- 412 (599)
+ ....|.. +|+. -++.++++. . +|.. |+.|||+|+. ..|+|+
T Consensus 341 ~~~~~~~~~~~~~~~~~G~p-~~~~-~~~i~d~~g-----------~-----~~~~~~~~~GEl~v~g~~v~~GY~~~p~ 402 (541)
T 1v25_A 341 HLESLSEEEKLTLKAKTGLP-IPLV-RLRVADEEG-----------R-----PVPKDGKALGEVQLKGPWITGGYYGNEE 402 (541)
T ss_dssp GGTTSCHHHHHHHHTSCBEE-CTTC-EEEEECTTS-----------C-----BCCSSSCCCEEEEEESTTSBSSCBTCHH
T ss_pred cccccCccccccccCCCCCc-CCCc-EEEEECCCC-----------C-----CCCCCCCcceEEEEeCcchhccccCChh
Confidence 0 0112222 2332 244454321 1 2332 3689999985 366664
Q ss_pred -----------cccCCEEEEeeccCCCCEEEEEeecCceeeccccccCHHHHHHHHHHH
Q 007532 413 -----------YRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKTDEAELQNAIDNA 460 (599)
Q Consensus 413 -----------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~~e~~v~~av~~a 460 (599)
|+|||++++.. ...+.|+||.+|+++++|+++++.+||++|.+.
T Consensus 403 ~t~~~f~~~g~~~TGDlg~~d~----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 403 ATRSALTPDGFFRTGDIAVWDE----EGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp HHHTTBCTTSCEEEEEEEEECT----TCCEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred hhhhhccCCCCeEcCCEEEEcC----CceEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 99999999973 468999999999999999999999999999763
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.12 E-value=5.6e-10 Score=136.49 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=86.3
Q ss_pred eEEEEecch---hhhHHHHHHHhCCCCCccccccccccccccccCCCC-C-----CCCCCceeeecCceEEEEeeCCCCC
Q 007532 307 LDVIVTGAM---AQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPI-C-----RPSEVSYTIMPNMAYFEFLPQEPSD 377 (599)
Q Consensus 307 l~~~~~g~~---~~y~~~l~~~~g~~~~~~~~~Y~asEg~i~i~~~~~-~-----~~~~~~~~l~~~~~ffEFip~~~~~ 377 (599)
++++++||. ....+++.+.+++ ++++ +.||.||+.+....... . .....|.. +++.. +..++.+
T Consensus 722 lr~~~~gGe~l~~~~~~~~~~~~~~-~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~~~~-~~i~d~~--- 794 (1304)
T 2vsq_A 722 LRCILFGGERASVPHVRKALRIMGP-GKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKP-ISNAS-VYILNEQ--- 794 (1304)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHCT-TCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEE-CTTEE-EEEECTT---
T ss_pred ccEEEEecCCCCHHHHHHHHHhCCC-CEEE-EeEChhHHhHHheeeeccCccccCCCCCCcee-eCCCE-EEEECCC---
Confidence 556777774 3455666666766 7888 99999998543211100 0 00011221 23322 2223221
Q ss_pred CCCCCCCCCCCcccccCCCCCeEEEEEee---cccee--------------------ccccCCEEEEeeccCCCCEEEEE
Q 007532 378 SFGLTSSDPQPVDLVDVEMGKEYELVITT---YAGLY--------------------RYRVGDILRVIGFHNSAPQFHFV 434 (599)
Q Consensus 378 ~~~~~~~~~~~l~~~ev~~G~~YelviTt---~~GLy--------------------RYr~GDvV~v~gf~~~~P~i~f~ 434 (599)
...|.+|+.|||+|.. ..|+| .|||||+++... ...++|+
T Consensus 795 -------------~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~ 857 (1304)
T 2vsq_A 795 -------------SQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DGTIEYA 857 (1304)
T ss_dssp -------------SCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TSCEEEE
T ss_pred -------------cCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CCeEEEE
Confidence 1246799999999975 24544 399999999973 5689999
Q ss_pred eecCceeeccccccCHHHHHHHHHH
Q 007532 435 RRKNVLLSIESDKTDEAELQNAIDN 459 (599)
Q Consensus 435 gR~~~~l~~~GEk~~e~~v~~av~~ 459 (599)
||.+++++++|++|.+.+||.+|.+
T Consensus 858 GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 858 GRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp EEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred cCCCCEEEECCEeeCHHHHHHHHHh
Confidence 9999999999999999999999975
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.28 E-value=5.2e-06 Score=89.84 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=17.3
Q ss_pred cccceeecccccCCCCccccccChHHHHH
Q 007532 99 HPISEFLTSSGTSAGERKLMPTIQEELDR 127 (599)
Q Consensus 99 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 127 (599)
+.+.+...||||| |+||-+..|+..+..
T Consensus 183 ~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 183 PSTAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp CSEEEEECC-------CCCEEEEHHHHHH
T ss_pred CceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 3455888999999 899999999997643
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.29 E-value=0.00066 Score=58.50 Aligned_cols=93 Identities=9% Similarity=0.058 Sum_probs=59.1
Q ss_pred ecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCCCCCceEEEEEEEeecCCCCCCChHHHHHHHHHHH
Q 007532 436 RKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELLIKDSANSPTNEVLNQCCLAME 515 (599)
Q Consensus 436 R~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~hY~l~~E~e~~~~~~~~~~~~l~~~~~~ld 515 (599)
|.+|||+++|.|++|.+||++|.+. .++. ..+++..+.......-.+++++.. + ...+...++.+++.+-
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~-~--~~~~~~~~~~l~~~i~ 71 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVELSQ-L--FTDDYGRLQALTREIT 71 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEECT-T--CCCCHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCcc-cceEEEEeccccceeEEEEEEEee-c--cccccchhhhhHHHHH
Confidence 8999999999999999999999652 2321 123333322112223446676642 2 2345566677777777
Q ss_pred HHhChhhHhccccCCccCCeEEEEeCCccHHH
Q 007532 516 ECLNSVYRQGRVADNSIGPLEIRVVRNGTFEE 547 (599)
Q Consensus 516 ~~LN~~Y~~~R~~~g~l~p~~v~iv~~gtF~~ 547 (599)
+.+ +... .+ +++|.+|++|++.+
T Consensus 72 ~~l-------~~~~-gv-~~~v~~v~~~~lPr 94 (109)
T 3lax_A 72 RQL-------KDEI-LV-TPRVKLVPKGALPK 94 (109)
T ss_dssp HHH-------HHHH-SS-CCEEEEECTTCSCC
T ss_pred HHH-------HHHh-CC-ccceEEEcCCeecC
Confidence 766 3233 25 56899999999873
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.00 E-value=0.0022 Score=55.33 Aligned_cols=94 Identities=9% Similarity=0.074 Sum_probs=57.6
Q ss_pred eecCceeeccccccCHHHHHHHHHHHHHHhhhcCCeEEeeEEeecCCCCCceEEEEEEEeecCCCCCCChHHHHHHHHHH
Q 007532 435 RRKNVLLSIESDKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELLIKDSANSPTNEVLNQCCLAM 514 (599)
Q Consensus 435 gR~~~~l~~~GEk~~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~p~hY~l~~E~e~~~~~~~~~~~~l~~~~~~l 514 (599)
||.+|||+++|.++++.+|+++|.+. .++. ..|++..+.....-.-++++|+ . +. ...+....+.+.+.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~------p~v~-~~~~v~v~~~~~~e~l~~~ve~-~-~~-~~~~~~~~~~l~~~i 70 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVEL-S-QL-FTDDYGRLQALTREI 70 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEE-C-TT-CCCCHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC------CCcC-CcEEEEEEcCCCceEEEEEEEE-c-Cc-cccchhHHHHHHHHH
Confidence 79999999999999999999999762 2221 1454433221111234577777 2 21 111123444555666
Q ss_pred HHHhChhhHhccccCCccCCeEEEEeCCccHHH
Q 007532 515 EECLNSVYRQGRVADNSIGPLEIRVVRNGTFEE 547 (599)
Q Consensus 515 d~~LN~~Y~~~R~~~g~l~p~~v~iv~~gtF~~ 547 (599)
.+.+ +... .+ +++|.+|++|++.+
T Consensus 71 ~~~l-------~~~~-~~-~~~v~~v~~~~lPr 94 (109)
T 3gxs_A 71 TRQL-------KDEI-LV-TPRVKLVPKGALPK 94 (109)
T ss_dssp HHHH-------HHHH-SS-CCEEEEECTTCSCC
T ss_pred HHHH-------HHhh-CC-ceEEEEECCCCccC
Confidence 6666 3233 35 45999999999774
No 42
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=28.52 E-value=1.3e+02 Score=23.26 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHHHHHHHhhh-cCCeEEeeEEeecCCCCCceEEEEEEEee
Q 007532 447 KTDEAELQNAIDNASRLLRE-FNTSVGEYTSYANTKTIPGHYVIYWELLI 495 (599)
Q Consensus 447 k~~e~~v~~av~~a~~~l~~-~g~~l~~f~~~~~~~~~p~hY~l~~E~e~ 495 (599)
+=.++.+++||.+|++.++. .++++.+..+..+. +.-.||.+-+.+.|
T Consensus 14 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 62 (68)
T 2cc6_A 14 ESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGA-VEERTYQTEVQVAF 62 (68)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTT-SSSCEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 44588999999999987742 13567777766543 34569998888876
No 43
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=27.84 E-value=1.6e+02 Score=23.15 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHHHHHhhhc-CCeEEeeEEeecCCCCCceEEEEEEEee
Q 007532 447 KTDEAELQNAIDNASRLLREF-NTSVGEYTSYANTKTIPGHYVIYWELLI 495 (599)
Q Consensus 447 k~~e~~v~~av~~a~~~l~~~-g~~l~~f~~~~~~~~~p~hY~l~~E~e~ 495 (599)
+=.++.+++||.+|++.++.. +++|.+..+..+. +.-.||.+-+.+.|
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 64 (72)
T 3onr_A 16 TSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEVSF 64 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 445889999999999877422 3677788776653 35569998888877
No 44
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=25.45 E-value=66 Score=25.86 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=24.1
Q ss_pred ccccCCEEEEeeccCCCCEEEEEeecCceeecccccc
Q 007532 412 RYRVGDILRVIGFHNSAPQFHFVRRKNVLLSIESDKT 448 (599)
Q Consensus 412 RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEk~ 448 (599)
|+..||.|++.+ ...+.+.|. ...|.|..|+.+
T Consensus 29 ~f~~GD~iEi~~--P~g~~~~~~--v~~m~d~~G~~i 61 (89)
T 4he6_A 29 HFRPGDEVEFFG--PEIENFTQV--IEKIWDEDGNEL 61 (89)
T ss_dssp CBCTTCEEEEES--TTSCCEEEE--CCCEEETTSCEE
T ss_pred CcCCCCEEEEEc--CCCCcEEEE--eHHeEcCCCCEe
Confidence 588999999986 334445444 577888889876
No 45
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=23.03 E-value=38 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.8
Q ss_pred CCCCCccchhHHHHHHH
Q 007532 72 LPIIKYEDLQPEIQRIA 88 (599)
Q Consensus 72 vPl~~Yed~~p~ier~~ 88 (599)
||+.+|.|++.-.|+-.
T Consensus 2 vPiFt~selqr~qEkEr 18 (26)
T 1lbj_A 2 VPIFTYGELQRMQEKER 18 (26)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred CceeeHHHHHHHHHHHh
Confidence 89999999988888766
Done!